Query 000999
Match_columns 1193
No_of_seqs 538 out of 3437
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 8E-176 3E-180 1660.6 71.1 800 9-958 6-820 (862)
2 1ile_A Ilers, isoleucyl-tRNA s 100.0 2E-173 6E-178 1650.1 57.8 805 8-879 6-821 (821)
3 1ffy_A Isoleucyl-tRNA syntheta 100.0 9E-171 3E-175 1627.9 43.9 822 9-922 17-862 (917)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 2E-152 7E-157 1473.3 50.2 831 8-952 2-912 (967)
5 1wkb_A Leucyl-tRNA synthetase; 100.0 3E-134 1E-138 1290.2 51.5 728 8-830 2-810 (810)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-128 5E-133 1233.6 45.1 696 9-882 3-836 (878)
7 4arc_A Leucine--tRNA ligase; l 100.0 3E-127 1E-131 1210.1 48.2 664 8-850 23-812 (880)
8 3u1f_A Methionyl-tRNA syntheta 100.0 3.7E-86 1.3E-90 813.7 36.0 481 37-831 6-499 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 6.5E-86 2.2E-90 828.9 38.7 498 40-831 2-521 (722)
10 2x1l_A Methionyl-tRNA syntheta 100.0 1.6E-81 5.5E-86 768.9 37.7 473 37-831 9-491 (524)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 2.2E-80 7.6E-85 759.5 37.0 467 38-831 23-498 (536)
12 3h99_A Methionyl-tRNA syntheta 100.0 7.7E-81 2.6E-85 767.4 32.9 489 35-830 13-520 (560)
13 2d5b_A Methionyl-tRNA syntheta 100.0 2.5E-80 8.4E-85 754.8 31.4 457 39-831 2-469 (500)
14 3kfl_A Methionyl-tRNA syntheta 100.0 1.8E-79 6.1E-84 753.6 36.0 481 26-831 14-515 (564)
15 2csx_A Methionyl-tRNA syntheta 100.0 1.1E-78 3.9E-83 739.0 31.4 453 39-831 4-468 (497)
16 1wny_A Isoleucyl-tRNA syntheta 100.0 6.5E-40 2.2E-44 345.2 17.5 182 202-438 1-186 (186)
17 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.8E-39 6.3E-44 383.3 19.4 128 40-187 24-152 (462)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.4E-38 8.3E-43 374.4 25.9 144 597-777 244-390 (414)
19 3sp1_A Cysteinyl-tRNA syntheta 100.0 1E-37 3.5E-42 369.5 22.6 126 41-186 42-177 (501)
20 1li5_A Cysrs, cysteinyl-tRNA s 100.0 7.7E-35 2.6E-39 347.9 24.2 150 597-781 220-371 (461)
21 3pz6_A Leurs, leucyl-tRNA synt 100.0 9.6E-36 3.3E-40 325.6 11.3 207 183-436 47-308 (311)
22 1wka_A Valyl-tRNA synthetase; 100.0 8.9E-34 3E-38 286.6 15.0 141 202-435 2-146 (147)
23 3o0a_A Leucyl-tRNA synthetase 100.0 7.5E-34 2.6E-38 305.1 5.8 179 205-435 4-217 (219)
24 2wfg_A Cytosolic leucyl-tRNA s 100.0 1.6E-32 5.4E-37 302.7 13.5 180 220-441 33-258 (261)
25 2ajg_A Leucyl-tRNA synthetase; 100.0 8.3E-33 2.8E-37 293.5 9.1 172 203-431 9-194 (196)
26 2wfd_A Leucyl-tRNA synthetase, 100.0 1.6E-31 5.4E-36 293.8 15.7 181 207-433 8-251 (252)
27 3fnr_A Arginyl-tRNA synthetase 99.9 5E-23 1.7E-27 244.6 33.2 204 600-819 239-451 (464)
28 1iq0_A Arginyl-tRNA synthetase 99.9 1.1E-23 3.9E-28 259.3 27.4 177 630-819 381-589 (592)
29 2zue_A Arginyl-tRNA synthetase 99.9 5.9E-23 2E-27 253.6 28.2 180 630-819 411-626 (629)
30 1irx_A Lysyl-tRNA synthetase; 99.9 7.9E-23 2.7E-27 248.9 3.8 126 40-176 20-153 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.6 1.6E-14 5.6E-19 177.2 28.2 134 39-176 142-318 (607)
32 1nzj_A Hypothetical protein YA 97.8 2E-05 6.7E-10 88.5 6.1 92 46-176 9-101 (298)
33 2o5r_A Glutamyl-tRNA synthetas 97.7 8.2E-05 2.8E-09 88.9 10.1 96 42-176 13-117 (481)
34 3al0_C Glutamyl-tRNA(Gln) amid 97.5 0.00015 5E-09 88.6 9.0 93 45-176 132-233 (592)
35 2cyb_A Tyrosyl-tRNA synthetase 97.5 0.00012 4.1E-09 83.4 7.6 70 595-674 168-239 (323)
36 3aii_A Glutamyl-tRNA synthetas 97.5 0.0002 6.8E-09 85.9 9.2 94 43-175 97-190 (553)
37 1qtq_A GLNRS, protein (glutami 97.5 0.00019 6.4E-09 86.1 8.7 94 43-175 27-121 (553)
38 4g6z_A Glutamate-tRNA ligase; 97.4 0.00015 5.3E-09 86.1 7.7 93 45-176 28-121 (490)
39 2hz7_A Glutaminyl-tRNA synthet 97.2 0.00062 2.1E-08 85.2 9.3 94 43-175 67-161 (851)
40 2cfo_A Glutamyl-tRNA synthetas 97.1 0.00072 2.4E-08 80.9 8.9 89 48-175 7-96 (492)
41 1j09_A Glutamyl-tRNA synthetas 96.9 0.0017 5.8E-08 77.2 9.3 90 48-176 7-105 (468)
42 3afh_A Glutamyl-tRNA synthetas 96.7 0.0029 1E-07 75.5 9.6 94 44-176 27-129 (488)
43 2ja2_A Glutamyl-tRNA synthetas 96.7 0.0026 8.8E-08 76.0 8.6 92 46-176 10-110 (498)
44 3aii_A Glutamyl-tRNA synthetas 96.5 0.00054 1.8E-08 82.2 1.0 68 628-697 314-397 (553)
45 4gri_A Glutamate--tRNA ligase; 96.3 0.0071 2.4E-07 72.9 9.1 92 48-176 30-128 (512)
46 2yxn_A Tyrosyl-tRNA synthetase 95.7 0.0063 2.1E-07 69.0 4.5 73 596-673 190-262 (322)
47 2cfo_A Glutamyl-tRNA synthetas 95.7 0.028 9.5E-07 67.2 10.2 74 598-675 204-278 (492)
48 1jil_A Tyrrs, tyrosyl-tRNA syn 95.6 0.0079 2.7E-07 70.5 4.9 71 596-673 185-258 (420)
49 4arc_A Leucine--tRNA ligase; l 95.6 0.0084 2.9E-07 76.5 5.4 78 414-492 154-245 (880)
50 2ts1_A Tyrosyl-tRNA synthetase 95.6 0.0073 2.5E-07 70.6 4.4 71 596-673 184-257 (419)
51 2jan_A Tyrosyl-tRNA synthetase 95.4 0.0095 3.2E-07 69.9 4.6 71 596-673 186-259 (432)
52 2pid_A Tyrosyl-tRNA synthetase 95.3 0.0099 3.4E-07 68.2 4.5 71 596-673 209-281 (356)
53 1h3f_A Tyrosyl-tRNA synthetase 95.2 0.014 4.7E-07 68.7 5.1 70 596-674 186-257 (432)
54 2o5r_A Glutamyl-tRNA synthetas 95.0 0.05 1.7E-06 64.9 9.5 74 598-675 219-293 (481)
55 1qtq_A GLNRS, protein (glutami 95.0 0.0082 2.8E-07 72.0 2.7 61 629-691 253-329 (553)
56 2g36_A Tryptophanyl-tRNA synth 94.8 0.11 3.7E-06 59.3 11.1 73 596-674 152-230 (340)
57 1y42_X Tyrosyl-tRNA synthetase 94.7 0.0076 2.6E-07 70.0 1.3 92 577-673 209-320 (392)
58 2el7_A Tryptophanyl-tRNA synth 94.5 0.23 7.7E-06 56.6 12.7 72 596-674 140-220 (337)
59 1j09_A Glutamyl-tRNA synthetas 93.9 0.1 3.6E-06 61.9 8.7 74 598-675 200-274 (468)
60 1n3l_A Tyrosyl-tRNA synthetase 93.8 0.04 1.4E-06 63.7 4.8 68 596-673 177-247 (372)
61 2v0c_A Aminoacyl-tRNA syntheta 93.6 0.075 2.6E-06 68.2 7.1 77 414-492 134-225 (878)
62 2ja2_A Glutamyl-tRNA synthetas 93.5 0.19 6.3E-06 60.1 9.8 75 598-675 209-288 (498)
63 3afh_A Glutamyl-tRNA synthetas 93.5 0.18 6.3E-06 60.0 9.8 73 599-675 213-286 (488)
64 2dlc_X Tyrosyl-tRNA synthetase 92.9 0.051 1.7E-06 63.3 3.7 68 596-673 181-252 (394)
65 2zp1_A Tyrosyl-tRNA synthetase 92.5 0.083 2.8E-06 59.6 4.6 54 597-657 163-217 (314)
66 3tzl_A Tryptophanyl-tRNA synth 92.0 0.061 2.1E-06 60.9 2.8 73 596-673 138-216 (322)
67 3i05_A Tryptophanyl-tRNA synth 91.9 0.07 2.4E-06 61.9 3.1 55 598-657 225-283 (395)
68 2ip1_A Tryptophanyl-tRNA synth 91.7 0.098 3.4E-06 61.4 4.1 57 596-657 248-309 (432)
69 2dlc_X Tyrosyl-tRNA synthetase 91.6 0.27 9.4E-06 57.1 7.7 83 39-148 37-119 (394)
70 3vgj_A Tyrosyl-tRNA synthetase 91.5 0.11 3.6E-06 60.0 4.0 57 596-656 199-260 (373)
71 2hz7_A Glutaminyl-tRNA synthet 91.4 0.29 1E-05 61.5 8.0 60 630-691 294-369 (851)
72 1yi8_B Tryptophanyl-tRNA synth 91.2 0.061 2.1E-06 61.6 1.7 73 596-674 161-240 (351)
73 3jxe_A Tryptophanyl-tRNA synth 91.0 0.16 5.4E-06 58.8 4.9 54 598-656 208-266 (392)
74 1r6u_A Tryptophanyl-tRNA synth 91.0 0.17 5.7E-06 59.4 5.1 57 596-657 255-316 (437)
75 3al0_C Glutamyl-tRNA(Gln) amid 90.7 0.17 5.9E-06 61.7 5.1 71 601-675 319-390 (592)
76 3hv0_A Tryptophanyl-tRNA synth 90.7 0.14 4.9E-06 59.3 4.1 53 599-656 222-279 (393)
77 2cya_A Tyrosyl-tRNA synthetase 90.6 0.13 4.6E-06 59.1 3.7 68 596-673 176-263 (364)
78 3tze_A Tryptophanyl-tRNA synth 90.5 0.17 5.7E-06 58.9 4.4 57 596-657 242-303 (406)
79 3hzr_A Tryptophanyl-tRNA synth 90.3 0.22 7.5E-06 57.5 5.2 55 598-657 225-283 (386)
80 1r6t_A Tryptophanyl-tRNA synth 90.0 0.22 7.7E-06 59.1 5.0 57 596-657 302-363 (477)
81 2j5b_A Tyrosyl-tRNA synthetase 89.9 0.18 6.2E-06 57.6 4.0 55 597-656 186-245 (348)
82 1i6k_A TRPRS, tryptophanyl-tRN 86.6 0.25 8.6E-06 56.0 2.3 60 596-656 136-207 (328)
83 3p0j_A Tyrosyl-tRNA synthetase 86.6 0.39 1.3E-05 59.6 4.2 57 596-656 182-243 (690)
84 2cya_A Tyrosyl-tRNA synthetase 85.8 1 3.5E-05 51.7 7.0 46 40-91 34-79 (364)
85 2yy5_A Tryptophanyl-tRNA synth 85.5 0.34 1.2E-05 55.3 2.7 61 596-657 146-218 (348)
86 4g6z_A Glutamate-tRNA ligase; 85.2 2.6 8.9E-05 50.1 10.1 87 599-689 222-309 (490)
87 2cyb_A Tyrosyl-tRNA synthetase 85.1 1.2 4.2E-05 50.2 7.1 76 40-148 31-107 (323)
88 2cyc_A Tyrosyl-tRNA synthetase 84.9 0.41 1.4E-05 55.2 3.0 68 596-673 179-276 (375)
89 3foc_A Tryptophanyl-tRNA synth 84.3 0.51 1.7E-05 55.4 3.5 52 600-655 290-345 (451)
90 1nzj_A Hypothetical protein YA 84.2 0.55 1.9E-05 52.4 3.6 52 598-652 185-236 (298)
91 3jxe_A Tryptophanyl-tRNA synth 80.8 1.8 6.3E-05 49.9 6.3 49 38-91 70-118 (392)
92 1n3l_A Tyrosyl-tRNA synthetase 78.0 3.3 0.00011 47.6 7.4 41 40-85 34-74 (372)
93 3tzl_A Tryptophanyl-tRNA synth 75.3 0.9 3.1E-05 51.3 1.5 42 44-91 6-47 (322)
94 3sz3_A Tryptophanyl-tRNA synth 73.0 0.94 3.2E-05 51.5 1.0 61 596-656 142-216 (341)
95 2zp1_A Tyrosyl-tRNA synthetase 71.2 2.1 7.3E-05 48.0 3.3 41 39-85 26-67 (314)
96 3n9i_A Tryptophanyl-tRNA synth 69.3 2.2 7.6E-05 48.4 2.9 60 596-656 151-222 (346)
97 3a04_A Tryptophanyl-tRNA synth 68.9 3.5 0.00012 47.4 4.5 58 596-655 207-268 (372)
98 3hzr_A Tryptophanyl-tRNA synth 68.7 9.1 0.00031 44.1 7.9 45 38-86 79-123 (386)
99 1i6k_A TRPRS, tryptophanyl-tRN 67.1 5.9 0.0002 44.7 5.9 41 44-90 4-44 (328)
100 3a04_A Tryptophanyl-tRNA synth 66.2 2 6.8E-05 49.4 1.7 48 38-91 67-114 (372)
101 3prh_A Tryptophanyl-tRNA synth 65.4 3.1 0.00011 48.0 3.1 60 596-656 170-241 (388)
102 3vgj_A Tyrosyl-tRNA synthetase 62.8 4.3 0.00015 46.6 3.7 45 41-91 56-101 (373)
103 1yi8_B Tryptophanyl-tRNA synth 62.3 8.6 0.00029 43.7 6.1 46 41-92 22-67 (351)
104 2j5b_A Tyrosyl-tRNA synthetase 61.1 5 0.00017 45.6 3.8 44 39-86 38-81 (348)
105 3p0j_A Tyrosyl-tRNA synthetase 52.7 8.7 0.0003 47.6 4.2 46 40-91 39-85 (690)
106 3prh_A Tryptophanyl-tRNA synth 52.3 4.5 0.00015 46.6 1.5 46 40-91 30-79 (388)
107 4gri_A Glutamate--tRNA ligase; 52.2 24 0.00083 42.1 7.9 88 598-690 230-320 (512)
108 3tze_A Tryptophanyl-tRNA synth 50.1 18 0.00062 41.9 6.1 44 38-85 98-142 (406)
109 3hv0_A Tryptophanyl-tRNA synth 49.8 21 0.0007 41.2 6.5 46 38-87 71-117 (393)
110 3i05_A Tryptophanyl-tRNA synth 48.1 28 0.00094 40.2 7.2 48 38-89 75-123 (395)
111 2el7_A Tryptophanyl-tRNA synth 47.4 9.4 0.00032 43.2 3.1 32 51-85 10-42 (337)
112 2g36_A Tryptophanyl-tRNA synth 46.5 12 0.0004 42.5 3.7 44 44-92 15-58 (340)
113 2ip1_A Tryptophanyl-tRNA synth 46.5 12 0.00042 43.7 4.0 47 39-90 100-147 (432)
114 1h3f_A Tyrosyl-tRNA synthetase 42.4 15 0.00052 42.9 3.9 29 958-986 383-411 (432)
115 2cyc_A Tyrosyl-tRNA synthetase 41.5 15 0.0005 42.2 3.5 83 41-148 33-116 (375)
116 1y42_X Tyrosyl-tRNA synthetase 41.3 15 0.00051 42.4 3.6 41 40-85 63-104 (392)
117 2yxn_A Tyrosyl-tRNA synthetase 40.1 16 0.00053 41.1 3.4 45 41-91 33-78 (322)
118 2yy5_A Tryptophanyl-tRNA synth 39.5 9.4 0.00032 43.4 1.5 39 42-85 5-43 (348)
119 3sz3_A Tryptophanyl-tRNA synth 38.3 8.9 0.0003 43.4 1.0 43 43-91 8-50 (341)
120 2pid_A Tyrosyl-tRNA synthetase 37.0 20 0.00067 40.9 3.6 40 41-85 46-86 (356)
121 1jil_A Tyrrs, tyrosyl-tRNA syn 35.9 21 0.00071 41.6 3.7 63 19-86 5-73 (420)
122 2jan_A Tyrosyl-tRNA synthetase 35.4 19 0.00066 42.0 3.3 45 41-91 32-77 (432)
123 1r6u_A Tryptophanyl-tRNA synth 34.0 30 0.001 40.5 4.5 46 38-86 105-150 (437)
124 3foc_A Tryptophanyl-tRNA synth 32.7 67 0.0023 37.6 7.2 45 38-85 88-132 (451)
125 3n9i_A Tryptophanyl-tRNA synth 32.0 13 0.00043 42.2 1.0 43 43-91 17-59 (346)
126 1r6t_A Tryptophanyl-tRNA synth 31.4 33 0.0011 40.6 4.4 45 39-86 153-197 (477)
127 2ts1_A Tyrosyl-tRNA synthetase 27.4 37 0.0013 39.5 3.8 41 41-86 30-71 (419)
128 3kp1_E D-ornithine aminomutase 20.2 35 0.0012 32.2 1.4 74 109-196 14-100 (121)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=8e-176 Score=1660.58 Aligned_cols=800 Identities=25% Similarity=0.427 Sum_probs=725.0
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
.|||+++|++|+++|++ ++|++.. ++++++|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++||||
T Consensus 6 ~y~~~~~E~~~~~~W~~-~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 6 AYDPKSVEPKWAEKWAK-NPFVANP--KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp SCCGGGTHHHHHHHHHH-SCCCCCT--TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred CCChHHHHHHHHHHHHh-CCCccCc--CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 79999999999999999 9999875 35789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||||+|.+|+|+++..+. ...++|+++|+++|++|+++|.+.|++|+++||+|+||+|+|+||||.|+++|||+|.+|+
T Consensus 83 ~Glp~e~~vek~l~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 161 (862)
T 1gax_A 83 AGIATQVVVERLLLKEGK-TRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY 161 (862)
T ss_dssp CTHHHHHHHHTTTTTTTS-CCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCC-ChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999987754432 2456999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEE
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVK 248 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~ 248 (1193)
++||||+|.++|+|||+|+|+|||+|| +|++..++++||+||+.+. .+|+||||||||||||+||||||+++
T Consensus 162 ~kGliYrg~~~v~wcp~~~T~Lsd~EV--~~~e~~g~~~~v~f~~~~~---~~l~v~TTrPeTl~g~~avav~P~~~--- 233 (862)
T 1gax_A 162 HEGLAYRAPRLVNWCPRCETTLSDLEV--ETEPTPGKLYTLRYEVEGG---GFIEIATVRPETVFADQAIAVHPEDE--- 233 (862)
T ss_dssp TTSSEEEECCEEEEETTTTEEECGGGE--EECCEEEEEEEEECCCSSS---CCCEEEESCSGGGTTCCCEEECSSCC---
T ss_pred HCCCEEecccccccCCCcCcccccccc--ccccccceEEEEEEEecCC---CEEEEEeCCccccccceEEEECCCcc---
Confidence 999999999999999999999999999 6999999999999999764 59999999999999999999999953
Q ss_pred EEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeeccccc
Q 000999 249 VRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLV 328 (1193)
Q Consensus 249 v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~ 328 (1193)
+ |+ +|+
T Consensus 234 --------------------------------------------r---------------------y~---------~l~ 239 (862)
T 1gax_A 234 --------------------------------------------R---------------------YR---------HLL 239 (862)
T ss_dssp --------------------------------------------T---------------------TC---------SCT
T ss_pred --------------------------------------------H---------------------HH---------HHc
Confidence 1 32 578
Q ss_pred ccccc-cCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCC--C
Q 000999 329 GKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKI--T 405 (1193)
Q Consensus 329 G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~--~ 405 (1193)
|++|. |+. ++.+||++++||++++|||+||+|||||++||++|++||| ++++++|++|+|++++ |
T Consensus 240 G~~~~~P~~-------~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~id~~G~~~~~~~~g 307 (862)
T 1gax_A 240 GKRARIPLT-------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL-----KPVSVINLEGRMEGERVPE 307 (862)
T ss_dssp TCCCBCTTC-------CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTC-----CCCCSBCTTSBBCSSSSCT
T ss_pred CCEEECCCC-------CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCC-----CccceeCCCCccccccCCc
Confidence 88885 653 7899999999999999999999999999999999999999 9999999999999999 9
Q ss_pred CCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhc--CCccccchhh
Q 000999 406 DFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK--QTYWVPDYVK 483 (1193)
Q Consensus 406 ~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~--~~~~~P~~~~ 483 (1193)
+|.||++++||+.|+++|++.|+|++.+++.|+||||||||+||++++++||||++++++++++++++ +++|+|++.+
T Consensus 308 ~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~ 387 (862)
T 1gax_A 308 ALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWK 387 (862)
T ss_dssp TTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHH
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999974 7999999865
Q ss_pred hHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccc
Q 000999 484 EKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRR 563 (1193)
Q Consensus 484 ~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r 563 (1193)
++|.+||++++|||||||||||||||+|+|++|+.+ +|++.+++. . +...||. +|+ ..++|
T Consensus 388 -~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i-~v~~~~~l~---~-----------~~~~~~~-~g~--~~~~r 448 (862)
T 1gax_A 388 -KVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAV-NVPRPERYL---E-----------DPTSCEA-CGS--PRLKR 448 (862)
T ss_dssp -HHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCE-ECCCGGGTT---C-----------CCCSCTT-TCC--SCEEE
T ss_pred -HHHHHHHhcccceeEecccCCCcccCceecCCCCEE-EEecccccc---c-----------cchhhhh-cCc--hheec
Confidence 899999999999999999999999999999988764 567654421 0 1113332 343 37999
Q ss_pred cccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCc
Q 000999 564 IEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGK 643 (1193)
Q Consensus 564 ~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~ 643 (1193)
++||||||||||+|||++++|| ++.+.|+++||+|++++|+||+||||++|++++++++|+.||++|++||+|+|.+|+
T Consensus 449 ~~DvlDtWfdS~~~~~~~~~~p-~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~ 527 (862)
T 1gax_A 449 DEDVFDTWFSSALWPLSTLGWP-EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQ 527 (862)
T ss_dssp CCCCBCHHHHHTSCTTGGGTTT-SCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSC
T ss_pred CCcccceeeccCCcchhhccCC-CchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCC
Confidence 9999999999999999999999 456789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 000999 644 KMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFI 723 (1193)
Q Consensus 644 KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~ 723 (1193)
|||||+||+|+|.++|++||||+|||||+++++ .++|++|+++.+.+. +++++++||+++|+.+++. ++.
T Consensus 528 KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~-~~~D~~fs~~~l~~~-~~f~nkl~N~~rf~~~~~~--------~~~ 597 (862)
T 1gax_A 528 KMSKSKGNVIDPLEMVERYGADALRFALIYLAT-GGQDIRLDLRWLEMA-RNFANKLYNAARFVLLSRE--------GFQ 597 (862)
T ss_dssp BCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCC-TTCCEECCHHHHHHH-HHHHHHHHHHHHHHHHHSS--------SCC
T ss_pred CccccCCCCCCHHHHHHHcChHHHHHHHHhcCC-CCCCCccCHHHHHHH-HHHHHHHHHHHHHHHhccc--------CCC
Confidence 999999999999999999999999999998644 478999999999875 7899999999999987643 222
Q ss_pred CchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHHH
Q 000999 724 PLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALST 802 (1193)
Q Consensus 724 p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~t 802 (1193)
+.. ...+.+|+||+++++.+++.++++|++|+|++|++.+++|+ +++||||++++|+|++++ +.+++.+
T Consensus 598 ~~~-----~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~-----~~~~~~~ 667 (862)
T 1gax_A 598 AKE-----DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG-----NAHTLRT 667 (862)
T ss_dssp CCB-----CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT-----BHHHHHH
T ss_pred Ccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc-----HHHHHHH
Confidence 211 13578899999999999999999999999999999999999 689999999999999864 4678899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCCccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 000999 803 LYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLK 882 (1193)
Q Consensus 803 L~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k 882 (1193)
|+++|+.+++||||||||+||+||++|+. .+|||+++||+++. +|+.++..|+.+++++.++|++|++.+++.+
T Consensus 668 l~~~l~~~~~lL~P~~P~~aEeiw~~L~~-----~~sv~~~~wP~~~~-~d~~~~~~~~~~~~v~~~~r~~r~~~~i~~~ 741 (862)
T 1gax_A 668 LEEVLAVLLKLLHPMMPFLTSELYQALTG-----KEELALEAWPEPGG-RDEEAERAFEALKQAVTAVRALKAEAGLPPA 741 (862)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHHHC-----CSCGGGSCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhcCC-----CCeEEecCCCCCCc-CCHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 99999999999999999999999999973 47999999999874 6899999999999999999999999999999
Q ss_pred CCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCccee---------ecCCcceEEEEeeccChHHHhhHHhhhHHHHHHH
Q 000999 883 SPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLV---------PCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKE 953 (1193)
Q Consensus 883 ~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~---------~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~ 953 (1193)
+|+.. +|. . +. +.++. +..+|++++|+++|. +..+.+.|+++++.+|++++|+||+|+++++.++
T Consensus 742 ~~~~~-~v~-~--~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~ 815 (862)
T 1gax_A 742 QEVRV-YLE-G--ET-APVEE-NLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLKELLAL 815 (862)
T ss_dssp CCEEE-EEE-E--SC-HHHHH-THHHHHHHHCEEECSSCCSSEEEEECSSEEEEEECCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeeEE-EEe-C--hH-HHHHH-HHHHHHHHhCccccccccccceEEecCCcEEEEEeccccCHHHHHHHHHHHHHHHHHH
Confidence 99974 443 2 22 45666 889999999999874 4455677899999999999999999999999999
Q ss_pred HHhcC
Q 000999 954 VKAMS 958 (1193)
Q Consensus 954 l~~~~ 958 (1193)
|+++.
T Consensus 816 ~~~~~ 820 (862)
T 1gax_A 816 AERSQ 820 (862)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 2
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.9e-173 Score=1650.14 Aligned_cols=805 Identities=38% Similarity=0.759 Sum_probs=736.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
++|||+++|++||++|+++++|++..+.++++|+|+|++|||||||.|||||++|+|++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 58999999999999999999999887655688999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||||.+|+|++|+++++++.++|+++|++.|++++.+|.+.|++++++||+|+||+++|+||||.|+++|||+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 99999999999989999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCC----CcceEEEeecCCCccCCCceEEEccC
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNAN 243 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~----~~~~l~vwTTtPwTl~~n~al~V~p~ 243 (1193)
+++||||+|.++|+|||.|+|+|||+||..+|+++.++++||+|++.+.. .+.+|+||||||||||||+||||||+
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~ 245 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPE 245 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTT
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCC
Confidence 99999999999999999999999999997679999999999999997631 13799999999999999999999999
Q ss_pred ccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeee
Q 000999 244 FTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFS 323 (1193)
Q Consensus 244 ~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (1193)
++|+.++. ++++||+|+++++++.++ .++++ ++++
T Consensus 246 ~~y~~~~~--~~~~~i~a~~~~~~~~~~------------------------------------------~~~~~-~~~~ 280 (821)
T 1ile_A 246 YTYAAFQV--GDEALILEEGLGRKLLGE------------------------------------------GTQVL-KTFP 280 (821)
T ss_dssp SCEEEEEE--TTEEEEEETTHHHHHTCT------------------------------------------TSCEE-EEEC
T ss_pred CceeEEEc--CCcEEEehHHHHHHHHhh------------------------------------------CcEEE-EEec
Confidence 99999985 589999999999988651 17788 9999
Q ss_pred cccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccC
Q 000999 324 GAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGK 403 (1193)
Q Consensus 324 G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~ 403 (1193)
|++|+|++|.|+|+++ .++.+||++++||++++|||+||+|||||++||++|++||| +++++||++|+|++.
T Consensus 281 G~~l~g~~~~~p~~~~---~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~id~~G~~~~~ 352 (821)
T 1ile_A 281 GKALEGLPYTPPYPQA---LEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL-----PLLKTVDEEGKLLVE 352 (821)
T ss_dssp HHHHTTCBBCCSSCCC---CSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTC-----CCCCCBCTTSBBCSG
T ss_pred hHHhcCCEEEcCCccc---CCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCC-----CcceeECCCCcCccc
Confidence 9999999998877653 26789999999999999999999999999999999999999 999999999999998
Q ss_pred CCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhh
Q 000999 404 ITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK 483 (1193)
Q Consensus 404 ~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~ 483 (1193)
| |+|++++||++.|+++|+++|++++.++++|+||||||||+|+|+++++||||+++++++++++++++++|+|++.+
T Consensus 353 -~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~ 430 (821)
T 1ile_A 353 -P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIK 430 (821)
T ss_dssp -G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGT
T ss_pred -C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhh
Confidence 7 99999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCc-c--cccccCCCccccccCCCCCCccc
Q 000999 484 EKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEK-I--FDLHRHNIDHITIPSSRGPEFGL 560 (1193)
Q Consensus 484 ~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~-~--~dlh~~~id~~~~~~~~g~~~~~ 560 (1193)
.+++.+||++++||||||||+||||||+|+|++|+++.++++++++.+..+.. . .++|++++|.+.++|++| +.
T Consensus 431 ~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g---~~ 507 (821)
T 1ile_A 431 EGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACG---GT 507 (821)
T ss_dssp TTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTS---SE
T ss_pred HhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCC---Cc
Confidence 78999999999999999999999999999999999999999999987644321 1 478999999987777655 48
Q ss_pred ccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEcc
Q 000999 561 LRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAE 640 (1193)
Q Consensus 561 ~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~ 640 (1193)
++|++||||||||||++|+++++||+++++.|+++||+|++++|+||+||||++++++|.++++++||++|++||++++.
T Consensus 508 ~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~ 587 (821)
T 1ile_A 508 MRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDE 587 (821)
T ss_dssp EEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECT
T ss_pred hhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECC
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCC
Q 000999 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGA 720 (1193)
Q Consensus 641 ~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~ 720 (1193)
+|+|||||+||+|+|.++|++||||++||||+++.+ .++|++|+++.+.+..++++++|||+++|+..... +.
T Consensus 588 ~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~-~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~-~~----- 660 (821)
T 1ile_A 588 KGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAP-PEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYAN-LD----- 660 (821)
T ss_dssp TSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSC-SSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHH-HH-----
T ss_pred CCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCC-CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-----
Confidence 999999999999999999999999999999998654 36899999999988558899999999998764321 11
Q ss_pred CCCC-chhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHH
Q 000999 721 PFIP-LDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRI 798 (1193)
Q Consensus 721 ~~~p-~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~ 798 (1193)
++.| .... ......+|+|++++++.+++.+.++|++|+|++|+..|++|+ ++++|||++.+|+|+|......++++
T Consensus 661 ~~~~~~~~~--~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~ 738 (821)
T 1ile_A 661 RPDLKNPPP--PEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREA 738 (821)
T ss_dssp CCCTTSCCC--STTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTH
T ss_pred cCCcccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHH
Confidence 1222 1000 113467899999999999999999999999999999999999 88999999999999987543334567
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCC-CeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHH
Q 000999 799 ALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEE-SIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRER 876 (1193)
Q Consensus 799 a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~-SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~ 876 (1193)
++.+|+++|+.+++||+|||||+||+||++|+...+...+ |||++.||++++. +|+++++.|+.++++++.+|++|++
T Consensus 739 ~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r~~r~~ 818 (821)
T 1ile_A 739 AYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARAK 818 (821)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999742111135 9999999999887 8999999999999999999999988
Q ss_pred cCC
Q 000999 877 HNK 879 (1193)
Q Consensus 877 ~~i 879 (1193)
.++
T Consensus 819 ~~~ 821 (821)
T 1ile_A 819 SGV 821 (821)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 3
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=9.2e-171 Score=1627.92 Aligned_cols=822 Identities=28% Similarity=0.522 Sum_probs=717.0
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
++|++++|++||++|+++++|++..+.++++|+|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++||||
T Consensus 17 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~ 96 (917)
T 1ffy_A 17 RGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDT 96 (917)
T ss_dssp SCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBC
T ss_pred CCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCch
Confidence 79999999999999999999998765567899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||||||.+|+|+ |++++ ++|+++|+++|++|+.+|.+.|+++|+|||+|+||+++|+||||.|+++++|+|.+|+
T Consensus 97 hGlpiE~~a~k~-G~~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~ 171 (917)
T 1ffy_A 97 HGLPIEQALTKK-GVDRK----KMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA 171 (917)
T ss_dssp CSHHHHHHHHHH-TCCST----TTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHc-CCCch----hCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHH
Confidence 999999999987 98764 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCC----CcceEEEeecCCCccCCCceEEEccCc
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNANF 244 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~----~~~~l~vwTTtPwTl~~n~al~V~p~~ 244 (1193)
++||||||.++|+|||.|+|+|||+|| +|++..++++||+|++.++. ++.+++||||||||||||+||||||++
T Consensus 172 ~kGliYr~~~~v~wcp~~~T~Lae~eV--ey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~ 249 (917)
T 1ffy_A 172 DKGLIYKGKKPVYWSPSSESSLAEAEI--EYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPEL 249 (917)
T ss_dssp HTTCEEEEEEEEEEETTTTEECCGGGE--EEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTC
T ss_pred HcCCeEecccceeccCCCCcCcchhhh--hcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCC
Confidence 999999999999999999999999999 79999999999999997631 137999999999999999999999999
Q ss_pred cEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccce--Eeeeee
Q 000999 245 TYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYE--KLGEVF 322 (1193)
Q Consensus 245 ~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--i~~~~~ 322 (1193)
+|+.++. +++.||+|+++++.+.+.. | .+.|+ ++ .++
T Consensus 250 ~Y~~v~~--~~~~~i~a~~~~~~~~~~~------------------------~--------------~~~~~~~~~-~~~ 288 (917)
T 1ffy_A 250 KYGQYNV--NGEKYIIAEALSDAVAEAL------------------------D--------------WDKASIKLE-KEY 288 (917)
T ss_dssp CCCCCCT--TTTCCCCCHHHHHHHHTTT------------------------T--------------CCSSCCCCC-CCC
T ss_pred ceEEEEe--CCceeehHHHHHHHHHHhc------------------------C--------------cccceeeee-eee
Confidence 9999874 4678999999999886520 0 11266 77 899
Q ss_pred ecccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCcccc
Q 000999 323 SGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTG 402 (1193)
Q Consensus 323 ~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~ 402 (1193)
+|++|.|++|.+|| .++.+||++++||++++|||+||+|||||++||++|++||| +++++||++|+|++
T Consensus 289 ~G~~l~g~~~~~P~------~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L-----~~~~~vd~~G~~~~ 357 (917)
T 1ffy_A 289 TGKELEWVVAQHPF------LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL-----PVISPIDDKGVFTE 357 (917)
T ss_dssp CTTTCTTCCCBCCT------TCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSC-----CCCCCCCSSSCCCT
T ss_pred ecccccCCEEECCC------CCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCC-----CeeeeECCCceeCC
Confidence 99999999996443 26889999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchh
Q 000999 403 KITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYV 482 (1193)
Q Consensus 403 ~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~ 482 (1193)
++|+|+|+++++|++.|++.|+++|.|++.++++|+||||||||+|+|||+++||||+++++++++++++++++|+|++
T Consensus 358 ~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~- 436 (917)
T 1ffy_A 358 EGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW- 436 (917)
T ss_dssp TCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHH-
T ss_pred cccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEE----ecChHHHHHhhCCc------ccccccCCCccccccC
Q 000999 483 KEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIV----VDSVDKLEKLSGEK------IFDLHRHNIDHITIPS 552 (1193)
Q Consensus 483 ~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~----v~s~~el~~l~g~~------~~dlh~~~id~~~~~~ 552 (1193)
..+|+.+||++++||||||||+||+|||+|+|++ +++++ +.+++++.+..|.. ..+++. +..+||.
T Consensus 437 ~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~---~~~~~~~ 512 (917)
T 1ffy_A 437 GKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLP---EGFTHPG 512 (917)
T ss_dssp HHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSS---TTCCCSS
T ss_pred HHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcc---ccccccc
Confidence 4689999999999999999999999999999988 44432 12233333333432 112221 1234553
Q ss_pred CCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEE
Q 000999 553 SRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLI 632 (1193)
Q Consensus 553 ~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~ 632 (1193)
||+ ..++|++||||||||||++||+.++++ +.+ .||+|++++|+||+||||+++++.+++++++.||++|+
T Consensus 513 -~g~--~~~~~~~D~lD~WfdSg~~~~~~l~~~----~~~--~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~ 583 (917)
T 1ffy_A 513 -SPN--GTFTKETDIMDVWFDSGSSHRGVLETR----PEL--SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLL 583 (917)
T ss_dssp -CTT--SCCEECCCEECHHHHHHTHHHHTTTTS----TTC--CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEE
T ss_pred -CCc--ccccccCCCcCeecCCCCCHHHHcCCc----hhc--CCCceEEEEEecccccHHHHHHHHHHHhhCCCccccee
Confidence 333 379999999999999999999987653 223 39999999999999999999999999999999999999
Q ss_pred EEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000999 633 CNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAK 712 (1193)
Q Consensus 633 ~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~ 712 (1193)
+||||+|++|+|||||+||+|+|.++|++||||+|||||++++ .++|++|+++.+.+. ++++++|||+++|+..++.
T Consensus 584 ~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~--~~~D~~fs~~~l~~~-~~~~~kl~n~~r~~l~nl~ 660 (917)
T 1ffy_A 584 SHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTD--YLADVRISDEILKQT-SDDYRKIRNTLRFMLGNIN 660 (917)
T ss_dssp EECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSC--TTSCEECCHHHHHHH-HHHHHHHHHHHHHHHHTST
T ss_pred EeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccC--CCCCcccCHHHHHHH-HHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999854 478999999999875 7789999999999987654
Q ss_pred HhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH-HHHHHHHHhhhccccCCC
Q 000999 713 RLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLD-NLTNIYVRFNRKRLKGRS 791 (1193)
Q Consensus 713 ~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~-~lsnwYi~~~r~rl~~~~ 791 (1193)
. |.+.....+...+..+|+||+++++.+++.++++|++|+|++|++.|++|+. ++||||++.+|+|++++.
T Consensus 661 ~--------~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~ 732 (917)
T 1ffy_A 661 D--------FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQ 732 (917)
T ss_dssp T--------CCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSC
T ss_pred c--------cCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccC
Confidence 2 2211000001235788999999999999999999999999999999999996 899999999999998754
Q ss_pred C-hHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCCccHHHHHHHHHHHHH----
Q 000999 792 G-EDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTI---- 866 (1193)
Q Consensus 792 ~-~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~~D~~le~~~~~~~~v---- 866 (1193)
. +.++++++.+|+++|..+++||||||||+||+||++|+.. ..+|||++.||++++ .|+.++..|+.++++
T Consensus 733 ~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~---~~~sv~~~~wP~~~~-~~~~l~~~~~~~~~v~~~v 808 (917)
T 1ffy_A 733 RDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV---KEESVHLADMPKVVE-VDQALLDKWRTFMNLRDDV 808 (917)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC---SSSSGGGSCCCCCCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC---CCCCeEecCCCCCCc-chHHHHHHHHHHHHHHHHH
Confidence 2 4567788999999999999999999999999999999741 247999999999876 578888889888875
Q ss_pred HHHHHHHHHHcCCCCCCCcceeEEeCCChh--hHHHHHhHHHHHHHHhhcCcceeecC
Q 000999 867 IDLARNIRERHNKPLKSPLREMIVVHPDAD--FLDDIAGKLKEYVLEELNVRSLVPCN 922 (1193)
Q Consensus 867 i~~~R~~R~~~~i~~k~pl~~~vv~~~~~~--~~~~l~~~l~~~i~~elNv~~v~~~~ 922 (1193)
...+|++|++.++ +.||+..+++..+.+ ..+.++. + +.|+..++|++|++..
T Consensus 809 ~~~~~~~R~~~~i--~~~l~~~v~i~~~~~~~~~~~l~~-~-~~l~~~~~~s~~~~~~ 862 (917)
T 1ffy_A 809 NRALETARNEKVI--GKSLEAKVTIASNDKFNASEFLTS-F-DALHQLFIVSQVKVVD 862 (917)
T ss_dssp HHHHHHHHHTTSC--SSGGGEEEEEECCSSCCHHHHGGG-C-SCHHHHTTSSEEEECS
T ss_pred HHHHHHHHHhcCC--CCCCceEEEEEeCChhhHHHHHhh-H-HHHHHHhcccceEEec
Confidence 5567788887776 578876554443333 5555555 5 5688889999988853
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-152 Score=1473.27 Aligned_cols=831 Identities=20% Similarity=0.305 Sum_probs=676.2
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||+++|++||++|+++++|+++.+.++++|+|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++|||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD 81 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCC
Confidence 46999999999999999999999987533345899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhh----hcC-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCC--hhH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVF----QMG-----IDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMD--LKF 156 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~----~~g-----~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d--~~y 156 (1193)
|||||||..+++ ++...+..+. .+| +++|+ .|++|+.+|...|++||++||+|+||+|+|+||| |.|
T Consensus 82 ~~GlPie~~a~~-~~~~~~~~~~~~~~~~gi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y 159 (967)
T 1wz2_A 82 ITGSPIVGIAER-IKNRDPKTIWIYRDVYKVPEEILWTFE-DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPF 159 (967)
T ss_dssp CCSSHHHHHHHH-HHTTCHHHHHHHHTTSCCCHHHHHGGG-SHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHH
T ss_pred CCCcHHHHHHHH-hhccchhHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhH
Confidence 999999999885 3322222211 123 23444 6999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCc
Q 000999 157 MESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNL 236 (1193)
Q Consensus 157 ~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~ 236 (1193)
+++|||+|.+|+++||||+|.++|+|||+|+|+|||+||+.+.....+..++|+|++.+...+.+|+||||||||||||+
T Consensus 160 ~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~ 239 (967)
T 1wz2_A 160 SKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVT 239 (967)
T ss_dssp HHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhhe
Confidence 99999999999999999999999999999999999999965544334456899999976432379999999999999999
Q ss_pred eEEEccCccEEEEEecc--CCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhccccccc
Q 000999 237 ALCVNANFTYVKVRNKY--TGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNES 314 (1193)
Q Consensus 237 al~V~p~~~Yv~v~~~~--~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 314 (1193)
||||||+++|+.++... ++++||+|++++.++... . ..
T Consensus 240 avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~-------------------~---------------------~~ 279 (967)
T 1wz2_A 240 NMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQ-------------------D---------------------RE 279 (967)
T ss_dssp EEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHS-------------------S---------------------CE
T ss_pred EEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhh-------------------c---------------------cC
Confidence 99999999999987531 238999999998876431 0 12
Q ss_pred ceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHH----------HHHcCCC
Q 000999 315 YEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRV----------CIENQII 384 (1193)
Q Consensus 315 ~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~----------~~~~~l~ 384 (1193)
++++ ++++|++|+|++|.+|+ .++.+||++++||++++|||+||+|||||++||++ |++|||.
T Consensus 280 ~~~~-~~~~G~~l~G~~~~~P~------~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~ 352 (967)
T 1wz2_A 280 IEVI-EEFKGEKLIGKYVRNPV------SGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352 (967)
T ss_dssp EEEE-EECCSSTTSSCEEECSS------SSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCC
T ss_pred cEEE-EEEEchhhcCCEEECCC------CCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCc
Confidence 7888 99999999999997554 36889999999999999999999999999999986 4677862
Q ss_pred c---cCCCccee-----------------------ecC----------------CCccccCCCCCCCcchhhhhHHHHHH
Q 000999 385 N---KGENLIVA-----------------------VDD----------------DGCFTGKITDFSGRYVKDADKDIIEA 422 (1193)
Q Consensus 385 ~---~~~~~~~~-----------------------vd~----------------~G~~~~~~~~~~G~~v~ea~~~Ii~~ 422 (1193)
. .+.+++++ +|+ +|+|+ +|+|+|++|+||++.|+++
T Consensus 353 ~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~ 430 (967)
T 1wz2_A 353 PRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKE 430 (967)
T ss_dssp CCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHH
T ss_pred hhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHH
Confidence 1 00123333 343 78888 7899999999999999999
Q ss_pred HHHCCCeeeeccccccCCcccCCCCCeEEe-eeCccccccH--HHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceee
Q 000999 423 LKAKGRLVKTGSLTHSYPFCWRSDTPLIYR-AVPSWFVRVE--TLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAV 499 (1193)
Q Consensus 423 L~~~g~l~~~~~~~h~yp~c~R~~~pli~~-~~~qWFi~~~--~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~I 499 (1193)
|+++|+++...++.| ||+|||||+|++++ +++||||+++ ++++++++++++++|+|++.+ ++|.+||++++||||
T Consensus 431 L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~-~~~~~~l~~l~DW~I 508 (967)
T 1wz2_A 431 MLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR-AQFEAIIDWLDKKAC 508 (967)
T ss_dssp HHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTH-HHHHHHHHSCCEECC
T ss_pred HHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCcccc-chHHHhhhcccCeee
Confidence 999999998776655 89999999999999 5999999998 599999999999999999865 799999999999999
Q ss_pred ccccCCCCcccE---EEcCCC-CEEEEe------cChHHHHHhhCCcccccccCCCccccccCCCCCCccccccccccee
Q 000999 500 SRSRFWGTPLPV---WTSEDG-EEIIVV------DSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFD 569 (1193)
Q Consensus 500 SRqr~WG~pIPi---w~~~~~-~~~~~v------~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D 569 (1193)
||||+||||||+ |.|+.. +..+|+ .+++++.+..|.+..++|++.+|.+.+++. .. .+..|
T Consensus 509 SRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~--------~~-g~~~~ 579 (967)
T 1wz2_A 509 ARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEF--------SE-DKEKE 579 (967)
T ss_dssp CBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCC--------CH-HHHHH
T ss_pred ccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCcc--------cc-Ccccc
Confidence 999999999994 555421 011122 122233333444455666665555543210 00 13455
Q ss_pred eeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCc-cEEEEEeeEEccCCcccccc
Q 000999 570 CWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNGLVLAEDGKKMSKK 648 (1193)
Q Consensus 570 ~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS 648 (1193)
+|++|| ||+++.+ ++++.|++|||+|++++|+||+|+|...+++.+.++++..|| +++++||||++ +|+|||||
T Consensus 580 ~~~~sG-~~~~~~~---~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS 654 (967)
T 1wz2_A 580 LEKKTG-IPAEIIH---EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKS 654 (967)
T ss_dssp HHHHHT-CCHHHHH---HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTT
T ss_pred chhhcC-CCHHHHh---hhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEcccc
Confidence 666777 5665544 345789999999999999999999977778889999998887 99999999997 89999999
Q ss_pred CCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhh
Q 000999 649 LKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLA 728 (1193)
Q Consensus 649 ~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~ 728 (1193)
+||+|+|.++|++||||+|||||+++++ .++|++|+++.+.+. .++++++||+++++... . .+.
T Consensus 655 ~GNvv~p~d~i~~yGaDalR~~ll~~~~-~~~d~~fs~~~~~~~-~~~l~rl~n~~~~~~~~----------~-~~~--- 718 (967)
T 1wz2_A 655 KGNVLNFIDAIEENGADVVRLYIMSLAE-HDSDFDWRRKEVGKL-RKQIERFYELISQFAEY----------E-VKG--- 718 (967)
T ss_dssp TCCCCBHHHHHHTTCHHHHHHHHHHHCC-TTCCEEECHHHHHHH-HHHHHHHHHHHHHHHSS----------C-CCC---
T ss_pred ccCCCCHHHHHHHhChHHHHHHHHhCCC-CCCCcccCHHHHHHH-HHHHHHHHHHHHHHhcC----------C-CCC---
Confidence 9999999999999999999999985444 478999999999875 78899999988876421 0 111
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHH
Q 000999 729 TLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLL 808 (1193)
Q Consensus 729 ~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~ 808 (1193)
....+.+|+||+++++.+++.++++|++|+|++|+..++.++...+|||++.+|++. +.+++.+|+++|+
T Consensus 719 --~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~--------~~~~~~~l~~~l~ 788 (967)
T 1wz2_A 719 --NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRD--------DEAKRYVLRTLAD 788 (967)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCC--------CHHHHHHHHHHHH
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchh--------HHHHHHHHHHHHH
Confidence 013467899999999999999999999999999999886555446899999988531 1367889999999
Q ss_pred HHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcce
Q 000999 809 TSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLRE 887 (1193)
Q Consensus 809 ~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~ 887 (1193)
.+++||||||||+||+||++|+. .+|||++.||++++. +|+++++.|+.++++++.+|++|++.++ ++| +.
T Consensus 789 ~l~~LLaP~~P~~aEeiw~~L~~-----~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~~~--~~p-~~ 860 (967)
T 1wz2_A 789 VWVRLMAPFTPHICEELWEKLGG-----EGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAKI--ENA-KR 860 (967)
T ss_dssp HHHHHHTTTSHHHHHHHHHHSSC-----CSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTSCC--CCS-BE
T ss_pred HHHHHhccccchHHHHHHHhcCC-----CCceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCC--CCC-Ce
Confidence 99999999999999999999963 479999999999887 8999999999999999999999999987 778 66
Q ss_pred eEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHHHH
Q 000999 888 MIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAK 952 (1193)
Q Consensus 888 ~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~ 952 (1193)
++|...++...+. ++.++ ++.|++++.. .+...++++.+|+++++.++.+.+
T Consensus 861 ~~i~~~~~~~~~~----~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 912 (967)
T 1wz2_A 861 AYIYTAEDWKWKV----AEVVS-EKRDFKSSME--------ELMKDSEIRKHGKEVAKIVQKLIK 912 (967)
T ss_dssp EEECCCTTTTTTT----HHHHT-TTCSSSHHHH--------HHHTSTTTTTTGGGTTHHHHHHTT
T ss_pred EEEEECCHHHHHH----HHHHH-hccChHHHHH--------HHhcCHHHHHHHHHHHHHHHHHhh
Confidence 7776655443322 32223 3467776543 134578999999999888877754
No 5
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.4e-134 Score=1290.15 Aligned_cols=728 Identities=21% Similarity=0.334 Sum_probs=584.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||+++|++||++|+++++|++..+.++++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 36999999999999999999999987655678999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhh----hcC--HH---HHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCC--hhH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVF----QMG--ID---KYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMD--LKF 156 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~----~~g--~~---~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d--~~y 156 (1193)
|||+|||..+++. +......+. .+| .+ +| ..|++++++|.+.|++++++||+|+||+++|+|+| |.|
T Consensus 82 ~~G~pie~~a~~~-~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~ 159 (810)
T 1wkb_A 82 ITGSPIVGIAERI-KNRDPKTIWIYRDVYKVPEEILWTF-EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPF 159 (810)
T ss_dssp CCBSHHHHHHHHH-HTTCHHHHHHHHHTSCCCHHHHHGG-GSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHH
T ss_pred CCCChHHHHHHHh-cccCchHHHHHHHHhCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHH
Confidence 9999999988753 211111111 112 12 23 36999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCc
Q 000999 157 MESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNL 236 (1193)
Q Consensus 157 ~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~ 236 (1193)
.++++|+|.+|+++||||+|.++|+|||+|+|+|||+||+.+........++|+|++.+...+.+|+||||||||||||+
T Consensus 160 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~ 239 (810)
T 1wkb_A 160 SKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVT 239 (810)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhh
Confidence 99999999999999999999999999999999999999965443333445779999976533378999999999999999
Q ss_pred eEEEccCccEEEEEec--cCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhccccccc
Q 000999 237 ALCVNANFTYVKVRNK--YTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNES 314 (1193)
Q Consensus 237 al~V~p~~~Yv~v~~~--~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 314 (1193)
||||||+++|+.++.. .++++||++++++.++... . ..
T Consensus 240 av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------~---------------------~~ 279 (810)
T 1wkb_A 240 NMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQ-------------------D---------------------RE 279 (810)
T ss_dssp EEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTS-------------------S---------------------CE
T ss_pred EEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhh-------------------h---------------------cc
Confidence 9999999999998752 1238999999998877441 0 12
Q ss_pred ceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHH----------HHcCCC
Q 000999 315 YEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVC----------IENQII 384 (1193)
Q Consensus 315 ~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~----------~~~~l~ 384 (1193)
++++ ++++|++|+|++|.+|+ .++.+||++++||++++|||+||+|||||++||++| ++|||.
T Consensus 280 ~~~~-~~~~G~~l~g~~~~~P~------~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~ 352 (810)
T 1wkb_A 280 IEVI-EEFKGEKLIGKYVRNPV------SGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352 (810)
T ss_dssp EEEE-EECTTTTTTTCEEECSS------SCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCC
T ss_pred eEEE-EEEEchhhcCCEEECCC------CCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCC
Confidence 7888 99999999999996444 378999999999999999999999999999999875 677862
Q ss_pred c---cCCCcceee-----------------------cC----------------CCccccCCCCCCCcchhhhhHHHHHH
Q 000999 385 N---KGENLIVAV-----------------------DD----------------DGCFTGKITDFSGRYVKDADKDIIEA 422 (1193)
Q Consensus 385 ~---~~~~~~~~v-----------------------d~----------------~G~~~~~~~~~~G~~v~ea~~~Ii~~ 422 (1193)
. ...+++++| |+ +|+|+ +|+|+|+.++||++.|++.
T Consensus 353 ~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~ 430 (810)
T 1wkb_A 353 PRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKE 430 (810)
T ss_dssp CCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHH
T ss_pred hhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHH
Confidence 0 001244443 32 68887 7899999999999999999
Q ss_pred HHHCCCeeeeccccccCCcccCCCCCeEEe-eeCccccccHH--HHHHHHHhhcCCccccchhhhHhHHhhhhcCCceee
Q 000999 423 LKAKGRLVKTGSLTHSYPFCWRSDTPLIYR-AVPSWFVRVET--LKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAV 499 (1193)
Q Consensus 423 L~~~g~l~~~~~~~h~yp~c~R~~~pli~~-~~~qWFi~~~~--~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~I 499 (1193)
|+++|+++...++.| ||+|||||+|++++ +++||||++++ +++++++++++++|+|++.+ +++.+||++++||||
T Consensus 431 L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~-~~~~~~l~~l~Dw~I 508 (810)
T 1wkb_A 431 MLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR-AQFEAIIDWLDKKAC 508 (810)
T ss_dssp HHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGH-HHHHHHHHHCCCEEC
T ss_pred HHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchh-chHHHHhhcccCccc
Confidence 999999998888776 79999999999999 69999999984 99999999999999999865 799999999999999
Q ss_pred ccccCCCCccc---EEEcCCC-CEEEEec------ChHHHHHhhCCcccccccCCCccccccCCCCCCccccccccccee
Q 000999 500 SRSRFWGTPLP---VWTSEDG-EEIIVVD------SVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFD 569 (1193)
Q Consensus 500 SRqr~WG~pIP---iw~~~~~-~~~~~v~------s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D 569 (1193)
||||+||+||| .|.|+.. +..+|++ .++++.+..|.+..++|.+.+|.+.+.+ +.. .+..|
T Consensus 509 SRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~--------~~~-g~~~~ 579 (810)
T 1wkb_A 509 ARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEE--------FSE-DKEKE 579 (810)
T ss_dssp EESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSC--------CCH-HHHHH
T ss_pred cccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccc--------ccc-Ccccc
Confidence 99999999999 5666642 1222222 1122222223322333332222221100 000 12233
Q ss_pred eeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCc-cEEEEEeeEEccCCcccccc
Q 000999 570 CWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNGLVLAEDGKKMSKK 648 (1193)
Q Consensus 570 ~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS 648 (1193)
+||+|| +|+.+++ ++++.|++|||+|++++|+||+++|...+++.+.++++..|| +++++||||++ +|+|||||
T Consensus 580 ~~~~sg-~~~~~~~---~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS 654 (810)
T 1wkb_A 580 LEKKTG-IPAEIIH---EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKS 654 (810)
T ss_dssp HHHHHS-CCHHHHH---HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTT
T ss_pred chhhhC-CCHHHHH---hhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhc
Confidence 344455 2333222 124578899999999999999999977778889999988776 99999999997 89999999
Q ss_pred CCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhh
Q 000999 649 LKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLA 728 (1193)
Q Consensus 649 ~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~ 728 (1193)
+||+|+|.++|++||||++||||+++++ .++|++|+++.+.+. .++++++||+++++... . .+.
T Consensus 655 ~GNvv~p~dli~~yGaDalR~~ll~~~~-~~~d~~fs~~~~~~~-~~~l~rl~n~~~~~~~~--------~---~~~--- 718 (810)
T 1wkb_A 655 KGNVLNFIDAIEENGADVVRLYIMSLAE-HDSDFDWRRKEVGKL-RKQIERFYELISQFAEY--------E---VKG--- 718 (810)
T ss_dssp TTCCCBHHHHHHHHCHHHHHHHHHHHCC-TTCCEEECHHHHHHH-HHHHHHHHHHHHHHHTC--------C---CCS---
T ss_pred CCCcCCHHHHHHHcChHHHHHHHHhcCC-CCCCcccCHHHHHHH-HHHHHHHHHHHHHHHhc--------c---Ccc---
Confidence 9999999999999999999999985444 378999999999875 77899999988776421 0 111
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH-HHHHHHHHHHHHhhhccccCCCChHHHHHH-HHHHHHH
Q 000999 729 TLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLL-KFLDNLTNIYVRFNRKRLKGRSGEDDCRIA-LSTLYNV 806 (1193)
Q Consensus 729 ~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~-~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a-~~tL~~v 806 (1193)
......+|+||+++++.+++.+.++|++|+|++|+..++ .+++ .+|+|++.+|++ + + ++ +.+++++
T Consensus 719 --~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~-~~n~yi~~~k~~-----~---~-~~~~~~l~~~ 786 (810)
T 1wkb_A 719 --NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN-DLRWYLRRTEGR-----D---D-EAKRYVLRTL 786 (810)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-HHHHHHHHTTTC-----C---C-HHHHHHHHHH
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHHHHHHhcCc-----c---h-hHHHHHHHHH
Confidence 013467899999999999999999999999999999775 5555 579999988753 1 1 23 7899999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHhh
Q 000999 807 LLTSCKVMAPFTPFFTEALYQNMR 830 (1193)
Q Consensus 807 L~~l~~LLaPf~PfiaEei~~~L~ 830 (1193)
|+.+++||||||||+||+||++|+
T Consensus 787 l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 787 ADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcC
Confidence 999999999999999999999984
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.4e-128 Score=1233.55 Aligned_cols=696 Identities=21% Similarity=0.328 Sum_probs=539.8
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
+|||+++|++||++|+++++|++.. .++++++|++++|||||||.|||||+++++++|+++||+||+||+|++++||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~ 81 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDA 81 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCc
Confidence 6999999999999999999999876 245788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||+|||..++| .|++ +++|+.+|.+.+++++++||+++||+++|+|+||.|+++++|+|.+|+
T Consensus 82 ~Glpie~~a~k-~g~~----------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 144 (878)
T 2v0c_A 82 FGLPAENAALK-FGVH----------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW 144 (878)
T ss_dssp SSHHHHHHHHH-TTCC----------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHH-cCCC----------------HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHH
Confidence 99999999986 5654 356899999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCccccccccccc----------------------------------------------
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDV---------------------------------------------- 202 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~---------------------------------------------- 202 (1193)
++||||++.++|+|||.|+|+|||+||+.++...
T Consensus 145 ~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi 224 (878)
T 2v0c_A 145 EKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWI 224 (878)
T ss_dssp HTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHH
T ss_pred HCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 9999999999999999999999999996432111
Q ss_pred -CCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCC
Q 000999 203 -PDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGP 281 (1193)
Q Consensus 203 -~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 281 (1193)
.+.+++|+|++.+. + .+|+||||||||||||+||||||+++|+.... +++....+++.++++...
T Consensus 225 ~~s~g~~v~f~~~~~-~-~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~--~~~~~~~~~~~~~~~~~~---------- 290 (878)
T 2v0c_A 225 GRSEGAEILFPVEGK-E-VRIPVFTTRPDTLFGATFLVLAPEHPLTLELA--APEKREEVLAYVEAAKRK---------- 290 (878)
T ss_dssp CEEEEEEEEEEBTTS-S-CEEEEEESCGGGGGGCCEEEECTTSHHHHHHS--CGGGHHHHHHHHHHHHTS----------
T ss_pred ccccCceEEEEecCC-C-ceEEEEeCCchhhhCcEEEEEcCCCeeeehhc--cchhHHHHHHHHHHHhhh----------
Confidence 01367899999764 2 68999999999999999999999999986542 122111222222222110
Q ss_pred CCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccc-cCcccccccCCceEEEEecCccccCCC
Q 000999 282 GGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSG 360 (1193)
Q Consensus 282 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~G 360 (1193)
.. +.+ ... . .+++|. +.|+.+. |+ .++.+||+.++||++++|
T Consensus 291 ----------~~-----------~~~------~~~-~-~~~~G~-~~g~~~~~P~-------~~~~ipi~~~~~V~~~~G 333 (878)
T 2v0c_A 291 ----------TE-----------IER------QAE-G-REKTGV-FLGAYALNPA-------TGERIPIWTADYVLFGYG 333 (878)
T ss_dssp ----------CH-----------HHH------HCS-S-SCCCCE-EEEEEEECTT-------TCCEEEEEECTTSCTTST
T ss_pred ----------hh-----------hhh------hhc-c-ceeeeE-ecCcEEECCC-------CCCEeEEEEeCcccCCCC
Confidence 00 000 000 1 456777 8888885 65 378999999999999999
Q ss_pred CCceeecCCCChhhHHHHHHcCCCccCCCcceeecC---------CCccccC-----CCCCCCcchhhhhHHHHHHHHHC
Q 000999 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDD---------DGCFTGK-----ITDFSGRYVKDADKDIIEALKAK 426 (1193)
Q Consensus 361 TGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~---------~G~~~~~-----~~~~~G~~v~ea~~~Ii~~L~~~ 426 (1193)
||+||+|||||++||++|++||| +++++||. +|.|+++ .++|.|++++||++.|++.|+++
T Consensus 334 TG~V~~~PaHd~~D~~~~~k~~L-----~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~ 408 (878)
T 2v0c_A 334 TGAIMAVPAHDQRDYEFARKFGL-----PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEK 408 (878)
T ss_dssp TSEEEECTTTCHHHHHHHHHHTC-----CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCCHHHHHHHHHcCC-----CceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999 89999975 4567654 57899999999999999999999
Q ss_pred CCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCC
Q 000999 427 GRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWG 506 (1193)
Q Consensus 427 g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG 506 (1193)
|+..+ ++.| +++|||||||||||
T Consensus 409 g~~~~----------------~v~~-----------------------------------------rlrDW~ISRQR~WG 431 (878)
T 2v0c_A 409 GLGKG----------------RVTY-----------------------------------------RLRDWLISRQRYWG 431 (878)
T ss_dssp TSEEE----------------EEEE-----------------------------------------SCCCEECEESCSSS
T ss_pred CCCCC----------------ceEE-----------------------------------------ecccchhhcccccC
Confidence 98532 1111 47899999999999
Q ss_pred CcccEEEcCCCCEEEEecC--------hHHHHHhh--CCcccccccCCCccccccCCCCCCcccccccccceeeeccCCC
Q 000999 507 TPLPVWTSEDGEEIIVVDS--------VDKLEKLS--GEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGS 576 (1193)
Q Consensus 507 ~pIPiw~~~~~~~~~~v~s--------~~el~~l~--g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~ 576 (1193)
+|||+|+|++|+.+.+... ++++.... |....+.|++|++ .+||. || +.++|++||||||||||
T Consensus 432 ~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~-~~cp~-cg---~~~~retDtmDtwfdSs- 505 (878)
T 2v0c_A 432 TPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYE-TTCPK-CG---GPAKRDTDTMDTFFDSS- 505 (878)
T ss_dssp EECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHE-EECTT-TC---SEEEECCCEECHHHHHT-
T ss_pred CcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcC-CcCCC-CC---Ccceecccccccccccc-
Confidence 9999999999987654321 11111122 2234556777763 45553 24 37999999999999996
Q ss_pred CCcccccCCCC-----ChhhhhhcCCceeEEecccCccc-------hHHHHHHHHHHccCCCCccEEEEEeeEEcc----
Q 000999 577 MPYAYIHYPFE-----NAEHFENNFPGQFIAEGLDQTRG-------WFYTLMVLSTALFGKPAFRNLICNGLVLAE---- 640 (1193)
Q Consensus 577 ~p~a~~~~p~~-----~~~~f~~~~Pad~~~~G~D~~r~-------Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~---- 640 (1193)
|+|+...+|.+ +++.+++|||+|++++|+||.+. |+..|..++ .++++.||++|++||||+|+
T Consensus 506 w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g-~~~~~~Pfk~l~~~G~vl~~~~~~ 584 (878)
T 2v0c_A 506 WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLG-MVKVEEPFQGLFTQGMVLAWTDFG 584 (878)
T ss_dssp SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTT-SCSCSCSBSBEECCCCEEEEEEEE
T ss_pred chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhh-cccCCCchHhheecceEeccceec
Confidence 88887777754 24678899999999999998643 333222233 36789999999999999984
Q ss_pred ------------------------------------------CC-------ccccccCCCCCChhhhHhhcChhHHHHhH
Q 000999 641 ------------------------------------------DG-------KKMSKKLKNYPSPVEVINDYGADALRLYL 671 (1193)
Q Consensus 641 ------------------------------------------~G-------~KMSKS~GN~v~P~~li~~yGaDalR~yL 671 (1193)
+| +|||||+||+|+|.++|++||||++||||
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~l 664 (878)
T 2v0c_A 585 PVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITI 664 (878)
T ss_dssp EEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHH
T ss_pred cccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHH
Confidence 99 99999999999999999999999999999
Q ss_pred hhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHH
Q 000999 672 INSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHF 751 (1193)
Q Consensus 672 ~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~ 751 (1193)
+++.+ .++|++|+++.+.+. +++++++||+++++..... .. ..... ...++..|+|++++++++++.
T Consensus 665 l~~~~-~~~D~~fs~~~v~~~-~~~l~Rl~n~~~~~~~~~~---~~-~~~~~-------~~~l~~~D~~ll~~l~~~i~~ 731 (878)
T 2v0c_A 665 LFAAP-PENEMVWTEEGVQGA-WRFLNRIYRRVAEDREALL---ET-SGVFQ-------AEALEGKDRELYGKLHETLKK 731 (878)
T ss_dssp HHHSC-TTSCEEECHHHHHHH-HHHHHHHHHHHHHHHHHHH---TC-CCCCC-------GGGCCHHHHHHHHHHHHHHHH
T ss_pred hccCC-CCCCceeCHHHHHHH-HHHHHHHHHHHHHHHhccc---cc-ccccC-------cccCCHHHHHHHHHHHHHHHH
Confidence 98433 378999999999875 7899999998877655421 00 00110 123578899999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 000999 752 VRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRK 831 (1193)
Q Consensus 752 v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~ 831 (1193)
|+++|++|+|++|+..|++|+++++++ ... . . . ..+++++|+.+++||+|||||+||+||+.|+
T Consensus 732 v~~~~e~~~f~~Ai~~l~~f~~~l~k~-~~~------~--~-~-----~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg- 795 (878)
T 2v0c_A 732 VTEDLEALRFNTAIAALMEFLNALYEY-RKD------R--P-V-----TPVYRTAIRYYLQMLFPFAPHLAEELWHWFW- 795 (878)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH-HHH------C--C-S-----CHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHhhh-ccc------c--h-h-----HHHHHHHHHHHHHHHcccchHHHHHHHHHcC-
Confidence 999999999999999999999877654 321 1 1 0 1579999999999999999999999999996
Q ss_pred cCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 000999 832 VGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLK 882 (1193)
Q Consensus 832 ~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k 882 (1193)
.+|||++.||++++. .. +..++. +++...++|.+..++..
T Consensus 796 -----~~sv~~~~wP~~d~~~l~---~~~~~~---~vqvngkvR~~i~v~~~ 836 (878)
T 2v0c_A 796 -----PDSLFEAGWPELDEKALE---KDVVEV---AVQVNGAVAGTIHIPKD 836 (878)
T ss_dssp -----SSCGGGSCCCCCCGGGGC-----------------------------
T ss_pred -----CCceeecCCCCCCHHHHH---HHHHHH---HHhhHHHHHHHcccCcC
Confidence 369999999998765 22 223333 33333455656555554
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.3e-127 Score=1210.10 Aligned_cols=664 Identities=23% Similarity=0.361 Sum_probs=515.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
++|||+++|++||++|+++++|++..+ .++++|++++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 23 ~~y~~~~iE~kw~~~W~~~~~f~~~~~--~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D 100 (880)
T 4arc_A 23 EQYRPEEIESKVQLHWDEKRTFEVTED--ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWD 100 (880)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTTCCCCC--TTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEEC
T ss_pred ccCChHHHHHHHHHHHHhcCCcccCCc--CCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCcc
Confidence 479999999999999999999998653 578999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||+|||..+++ .|+++ ++|+.++.+.|++++++||+|+||+++|+|+||.|+++++|+|.+|
T Consensus 101 ~~Glpie~~a~~-~g~~p----------------~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L 163 (880)
T 4arc_A 101 AFGLPAEGAAVK-NNTAP----------------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTEL 163 (880)
T ss_dssp CCSTHHHHHHHH-TTSCH----------------HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHH-cCCCH----------------HHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHH
Confidence 999999999976 57643 4588899999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccc----------ccccc-----------------------------------
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQ----------NYKDV----------------------------------- 202 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~----------~y~~~----------------------------------- 202 (1193)
+++||||++.++|+|||.|+|+|||+||.. +|++.
T Consensus 164 ~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~w 243 (880)
T 4arc_A 164 YKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNW 243 (880)
T ss_dssp HHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHH
T ss_pred HHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhh
Confidence 999999999999999999999999988743 23321
Q ss_pred --CCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCC
Q 000999 203 --PDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANG 280 (1193)
Q Consensus 203 --~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 280 (1193)
.+.+++|+|++.+. + .+|+||||||||||||+||||||+++|+......+ .++..+..+.
T Consensus 244 ig~s~g~~v~f~~~~~-~-~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~--------~~~~~~~~~~-------- 305 (880)
T 4arc_A 244 IGRSEGVEITFNVNDY-D-NTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN--------PELAAFIDEC-------- 305 (880)
T ss_dssp HCEEEEEEEEEEETTC-S-SEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC--------HHHHHHHTC---------
T ss_pred hccccceEEEEEecCC-C-ceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh--------HHHHHHHHHH--------
Confidence 12468999999764 2 68999999999999999999999999986543211 1222222200
Q ss_pred CCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeeccccccccc-ccCcccccccCCceEEEEecCccccCC
Q 000999 281 PGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKY-EPLFDYFKEFSDVAFRVIADNYVTSDS 359 (1193)
Q Consensus 281 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y-~Pl~~~~~~~~~~~~~vi~~~~V~~~~ 359 (1193)
.. +.. .++.+...+.+|. +.|+.+ +|+ .++.+||+.++||++++
T Consensus 306 ----~~---~~~--------------------~~~~~~~~~~~g~-~~g~~~~~P~-------~~~~ipi~~~~yV~~~~ 350 (880)
T 4arc_A 306 ----RN---TKV--------------------AEAEMATMEKKGV-DTGFKAVHPL-------TGEEIPVWAANFVLMEY 350 (880)
T ss_dssp ------------------------------------------CEE-EEEEEEECTT-------TCCEEEEEEETTSCSSS
T ss_pred ----hc---cCc--------------------hhhhhccceeecc-ccCcEEecCC-------CCCEeEEEEeCccccCC
Confidence 00 000 0011110244565 578777 466 47899999999999999
Q ss_pred CCCceeecCCCChhhHHHHHHcCCCccCCCcceeecC---------CCcccc-----CCCCCCCcchhhhhHHHHHHHHH
Q 000999 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDD---------DGCFTG-----KITDFSGRYVKDADKDIIEALKA 425 (1193)
Q Consensus 360 GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~---------~G~~~~-----~~~~~~G~~v~ea~~~Ii~~L~~ 425 (1193)
|||+||+|||||++||++|++||| +++++|+. +|.|++ +.+.|.||+++||+++|++.|++
T Consensus 351 GTGaV~~~Pahd~~D~~~~~~~~L-----pi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~ 425 (880)
T 4arc_A 351 GTGAVMAVPGHDQRDYEFASKYGL-----NIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTA 425 (880)
T ss_dssp TTSEEEECTTTCHHHHHHHHHHTC-----CCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEccCCCHHHHHHHHHcCC-----CceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 77776642 233443 35789999999999999999999
Q ss_pred CCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCC
Q 000999 426 KGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFW 505 (1193)
Q Consensus 426 ~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~W 505 (1193)
+|++.+. ++| +++||||||||||
T Consensus 426 ~g~~~~~------------------------------------------v~y---------------rlrDW~iSRQRyW 448 (880)
T 4arc_A 426 MGVGERK------------------------------------------VNY---------------RLRDWGVSRQRYW 448 (880)
T ss_dssp TTSEEEE------------------------------------------EEE---------------SCCCEECEESCSS
T ss_pred cCCccee------------------------------------------EEE---------------Ecccceeeeeecc
Confidence 9986542 011 4799999999999
Q ss_pred CCcccEEEcCCCCEEEEecChHHHHHhhCCc--------ccccccCCCccccccCCCCCCcccccccccceeeeccCCCC
Q 000999 506 GTPLPVWTSEDGEEIIVVDSVDKLEKLSGEK--------IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSM 577 (1193)
Q Consensus 506 G~pIPiw~~~~~~~~~~v~s~~el~~l~g~~--------~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~ 577 (1193)
|+|||+|+|++|+.+.+.. ++|....... ....|.+|+ .+.|+ | +.++|++|||||||||| |
T Consensus 449 G~PIPi~~c~~cg~v~v~~--~~Lpv~lp~~~~~~~~g~pl~~~~~w~---~~~cp-g---~~~~retDtmDtw~dSs-w 518 (880)
T 4arc_A 449 GAPIPMVTLEDGTVMPTPD--DQLPVILPEDVVMDGITSPIKADPEWA---KTTVN-G---MPALRETDTFDTFMESS-W 518 (880)
T ss_dssp SCBCCEEEETTSCEEECCG--GGCSCCCCSSCCCCSSSCHHHHSTTTT---EEESS-S---SEEEECCCEECTTTGGG-T
T ss_pred CCcceEEEECCCCeEeCCh--HHCccccchhcccCCCCCchHhCccce---eeccC-C---CcceeCCCcCCCcccCc-H
Confidence 9999999999999876542 3332111000 111223332 12333 4 38999999999999997 9
Q ss_pred CcccccCCCCC-----hhhhhhcCCceeEEecccCc-------cchHHHHHHHHHHccCCCCccEEEEEeeEE-------
Q 000999 578 PYAYIHYPFEN-----AEHFENNFPGQFIAEGLDQT-------RGWFYTLMVLSTALFGKPAFRNLICNGLVL------- 638 (1193)
Q Consensus 578 p~a~~~~p~~~-----~~~f~~~~Pad~~~~G~D~~-------r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vl------- 638 (1193)
||+..++|.++ ++.+++|||+|++++|.||. |||...|..++. +.++.||++|++||||+
T Consensus 519 y~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~-~~~~ePFk~ll~qGmVl~~~~~~~ 597 (880)
T 4arc_A 519 YYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM-VNSDEPAKQLLCQGMVLADAFYYV 597 (880)
T ss_dssp HHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS-CCCSCSEEEEECCCCEEEEEEEEE
T ss_pred HHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc-ccCCCChHHeEEeceEeecceecc
Confidence 99999999743 45678899999999999973 333333444443 57789999999999997
Q ss_pred ccCCc------------------------------------cccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccc
Q 000999 639 AEDGK------------------------------------KMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETL 682 (1193)
Q Consensus 639 d~~G~------------------------------------KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~ 682 (1193)
|++|+ |||||+||+|+|.++|++||||++|||++++++ .++|+
T Consensus 598 d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~-~~~dl 676 (880)
T 4arc_A 598 GENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASP-ADMTL 676 (880)
T ss_dssp CTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSC-TTSCE
T ss_pred ccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCC-CCCCc
Confidence 88898 999999999999999999999999999998754 37899
Q ss_pred cccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHh-cCCh
Q 000999 683 RFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEME-GYRL 761 (1193)
Q Consensus 683 ~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e-~y~~ 761 (1193)
+|+++++.+. +++++++||+++++..... ..... ...++..|+|++++++++++.|+++|+ +|+|
T Consensus 677 ~~s~~~ie~a-~rfl~rlwn~~~~~~~~~~------~~~~~-------~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~f 742 (880)
T 4arc_A 677 EWQESGVEGA-NRFLKRVWKLVYEHTAKGD------VAALN-------VDALTENQKALRRDVHKTIAKVTDDIGRRQTF 742 (880)
T ss_dssp ECCHHHHHHH-HHHHHHHHHHHHHHHHTCC------CCCCC-------STTCCHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ccCHHHHHHH-HHHHHHHHHHHHHHHhccc------ccccc-------cccCCHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 9999999875 7899999998887654210 00010 113567899999999999999999998 8999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCee
Q 000999 762 YTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIH 841 (1193)
Q Consensus 762 ~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh 841 (1193)
++|+.++++|++++++ | .. .. ..+..+++++|+.+++||+|||||+|||||+.|+. .+|||
T Consensus 743 ntAi~~l~efvn~l~k-~--------~~-~~----~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~-----~~sv~ 803 (880)
T 4arc_A 743 NTAIAAIMELMNKLAK-A--------PT-DG----EQDRALMQEALLAVVRMLNPFTPHICFTLWQELKG-----EGDID 803 (880)
T ss_dssp HHHHHHHHHHHHHHHT-S--------CC-SS----HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC-----SSCGG
T ss_pred hHHHHHHHHHHHHHHh-h--------hc-cc----hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHcCC-----CCeEE
Confidence 9999999999987654 2 11 11 23567899999999999999999999999999973 47999
Q ss_pred eccCCCCcC
Q 000999 842 FCSFPKEEG 850 (1193)
Q Consensus 842 ~~~~P~~~~ 850 (1193)
.++||++++
T Consensus 804 ~~~wP~~d~ 812 (880)
T 4arc_A 804 NAPWPVADE 812 (880)
T ss_dssp GSCCCCCCH
T ss_pred eCCCCCCCH
Confidence 999999763
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=3.7e-86 Score=813.73 Aligned_cols=481 Identities=19% Similarity=0.233 Sum_probs=383.6
Q ss_pred CCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHH
Q 000999 37 RCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDK 116 (1193)
Q Consensus 37 ~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~ 116 (1193)
+..++|+|+.|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+++| .|+++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-~g~~~----------- 73 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-KQVSP----------- 73 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-TTSCH-----------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-cCCCH-----------
Confidence 345789999999999999999999999999999999999999999999999999999999986 57764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccc
Q 000999 117 YNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAG 196 (1193)
Q Consensus 117 f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~ 196 (1193)
++++++|++++++++++||++.|| +++||||.|++.|+++|.+|+++|+||++.++|+|||+|+|+|++.||.
T Consensus 74 -----~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~ 146 (542)
T 3u1f_A 74 -----YDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT 146 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhh
Confidence 358899999999999999966665 7899999999999999999999999999999999999999999977651
Q ss_pred ccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCC
Q 000999 197 QNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSS 276 (1193)
Q Consensus 197 ~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 276 (1193)
..
T Consensus 147 ~~------------------------------------------------------------------------------ 148 (542)
T 3u1f_A 147 DG------------------------------------------------------------------------------ 148 (542)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccc
Q 000999 277 AANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVT 356 (1193)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~ 356 (1193)
T Consensus 149 -------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 149 -------------------------------------------------------------------------------- 148 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccc
Q 000999 357 SDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLT 436 (1193)
Q Consensus 357 ~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~ 436 (1193)
+|. .|
T Consensus 149 ----------~~~---------------------------~g-------------------------------------- 153 (542)
T 3u1f_A 149 ----------VDK---------------------------DG-------------------------------------- 153 (542)
T ss_dssp ----------ECT---------------------------TS--------------------------------------
T ss_pred ----------ccc---------------------------cC--------------------------------------
Confidence 000 00
Q ss_pred ccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhc--CCccccchhhhHhHHhhhhc-CCceeeccccC----CCCcc
Q 000999 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK--QTYWVPDYVKEKRFHNWLEN-ARDWAVSRSRF----WGTPL 509 (1193)
Q Consensus 437 h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~--~~~~~P~~~~~~r~~~wl~~-l~DW~ISRqr~----WG~pI 509 (1193)
+.+|+|||||+|++++.++|||+++++++++++++++ ...|.|++.+ +.+.+|+++ ++||||||||+ ||+||
T Consensus 154 ~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~-~~~~~~~~~~l~Dw~ISRq~~~~~~WGipi 232 (542)
T 3u1f_A 154 NPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRR-REVIRAVEKGLPDLSVSRARATLHNWAIPV 232 (542)
T ss_dssp CEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHH-HHHHHHHHHCCCCEECEEEGGGGTTCSCEE
T ss_pred ccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhh-HhHhhhhhccccccCccccccCcCCCCCcc
Confidence 1247899999999999999999999999999999875 4678999854 677888875 89999999998 99999
Q ss_pred cEEEcCCCCEEEEecChHHHHHhhCCc-ccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCC
Q 000999 510 PVWTSEDGEEIIVVDSVDKLEKLSGEK-IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFEN 588 (1193)
Q Consensus 510 Piw~~~~~~~~~~v~s~~el~~l~g~~-~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~ 588 (1193)
|. +.+++++++..+ +.|+. ....+ . ...| ...+..|.|++
T Consensus 233 P~----~~~~~~~vw~da----~~~~~~~~~~~---~------~~~g-------~~~~~~d~~~~--------------- 273 (542)
T 3u1f_A 233 PG----NPDHXVYVWLDA----LTNYLTGSRLR---V------DESG-------KEVSLVDDFNE--------------- 273 (542)
T ss_dssp TT----EEEEEECHHHHH----HTHHHHHHTEE---E------CTTS-------CEEEECSSGGG---------------
T ss_pred CC----CcCeeeeeeecc----chhhhhhhhcc---c------cccC-------Ccccccchhhh---------------
Confidence 94 345666665322 11110 00000 0 0011 11122233322
Q ss_pred hhhhhhcCCceeEEecccCccch----HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcCh
Q 000999 589 AEHFENNFPGQFIAEGLDQTRGW----FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGA 664 (1193)
Q Consensus 589 ~~~f~~~~Pad~~~~G~D~~r~W----f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGa 664 (1193)
...||+|++++|+||++|| .+++++. +.+|++.|++|||+. .+|+|||||+||+|+|.+++++|||
T Consensus 274 ----~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~-----g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~yga 343 (542)
T 3u1f_A 274 ----LERFPADVHVIGKDILKFHAIYWPAFLLSA-----GLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGY 343 (542)
T ss_dssp ----TTCCSCSEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCH
T ss_pred ----hcCCcceEEEecccccccccchhHHHHHhh-----cccccceecccccee-cCCceeccccCCCCChhHHHhhcCc
Confidence 1358999999999999874 3333322 567889999999976 5899999999999999999999999
Q ss_pred hHHHHhHhhCCccccccccccHhHHHHHHHh-hhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHH
Q 000999 665 DALRLYLINSPVVRAETLRFKKDGVFAVVKD-VFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINS 743 (1193)
Q Consensus 665 DalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~-~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils 743 (1193)
|+|||||++..+ .++|++|+++.+.+.+++ ++++|||.++++..... .. .+..|. ....+.+|+||++
T Consensus 344 D~lR~~l~~~~~-~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~----~~-~~~~~~-----~~~~~~~d~~il~ 412 (542)
T 3u1f_A 344 DALKYFLLRESG-FSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKI----NV-NGEWPS-----PAAYTEEDESLIQ 412 (542)
T ss_dssp HHHHHHHHHHCC-TTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTT----ST-TSBCCC-----CCCCCHHHHHHHH
T ss_pred hHHHHHHHhcCc-ccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhh----cc-cCCCCc-----cchhhHHHHHHHH
Confidence 999999997544 478999999999876554 66788886655543211 11 111121 1246789999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 000999 744 ATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTE 823 (1193)
Q Consensus 744 ~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaE 823 (1193)
+++++++.++++|++|+|++|++.|++|++ ++|+|++..++|.....+.+++.+++++++++|+.+++||+|||||+||
T Consensus 413 ~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~-~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~ae 491 (542)
T 3u1f_A 413 LIKDLPGTADHYYLIPDIQKAIIAVFDVLR-AINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSV 491 (542)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 999999999999999999999999999995 7999999999863222345667788999999999999999999999999
Q ss_pred HHHHHhhc
Q 000999 824 ALYQNMRK 831 (1193)
Q Consensus 824 ei~~~L~~ 831 (1193)
+||++|+.
T Consensus 492 ei~~~Lg~ 499 (542)
T 3u1f_A 492 VIFDMLGV 499 (542)
T ss_dssp HHHHHHTC
T ss_pred HHHHHCCC
Confidence 99999974
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=6.5e-86 Score=828.90 Aligned_cols=498 Identities=19% Similarity=0.229 Sum_probs=386.6
Q ss_pred CcEEEEcCCCCCCCccchhHHHh-hHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILA-GTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYN 118 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~-~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~ 118 (1193)
++|+++.|||||||.|||||+++ ++++|+++||+||+||+|+|++||||||+|||.++++ .|++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k-~G~~-------------- 66 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-EGRS-------------- 66 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HTCC--------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-cCCC--------------
Confidence 46999999999999999999999 9999999999999999999999999999999999987 4775
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQN 198 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~ 198 (1193)
|++++++|.+.+++++++||+ +||++++|+||.|++.++|+|.+|+++|+||++.++++|||.|+|+|||.+|..
T Consensus 67 --p~e~~~~~~~~~~~~~~~lgi--s~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g- 141 (722)
T 1rqg_A 67 --PREIVDEFHEQIKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG- 141 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS-
T ss_pred --HHHHHHHHHHHHHHHHHHhCC--CCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc-
Confidence 456899999999999999995 566689999999999999999999999999999999999999999999865520
Q ss_pred ccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCC
Q 000999 199 YKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAA 278 (1193)
Q Consensus 199 y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (1193)
|.|. + -.++
T Consensus 142 ----------------------------tcP~----c----~~~~----------------------------------- 150 (722)
T 1rqg_A 142 ----------------------------TCPY----C----GAED----------------------------------- 150 (722)
T ss_dssp ----------------------------BCSS----S----CCSC-----------------------------------
T ss_pred ----------------------------ccCc----c----CCcc-----------------------------------
Confidence 1110 0 0000
Q ss_pred CCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccC
Q 000999 279 NGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSD 358 (1193)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~ 358 (1193)
T Consensus 151 -------------------------------------------------------------------------------- 150 (722)
T 1rqg_A 151 -------------------------------------------------------------------------------- 150 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccccc
Q 000999 359 SGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHS 438 (1193)
Q Consensus 359 ~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~ 438 (1193)
+.|. .| +..|++ + ....+.
T Consensus 151 ----------~~Gd----~c----------------~~~G~~-----------------------------l--~~~~l~ 169 (722)
T 1rqg_A 151 ----------QKGD----QC----------------EVCGRP-----------------------------L--TPEILI 169 (722)
T ss_dssp ----------CCTT----TC----------------SSSCCC-----------------------------C--CTTSSB
T ss_pred ----------CCcc----hh----------------hhcccc-----------------------------c--Chhhcc
Confidence 0000 00 000110 0 011234
Q ss_pred CCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhh-hcCCceeeccccCCCCcccEEEcCCC
Q 000999 439 YPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWL-ENARDWAVSRSRFWGTPLPVWTSEDG 517 (1193)
Q Consensus 439 yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl-~~l~DW~ISRqr~WG~pIPiw~~~~~ 517 (1193)
+|+|||||+|++++.++||||+++++++++++++++..| |+..+ +++.+|| ++++|||||||++||+|||+|++...
T Consensus 170 ~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~w-p~~~~-~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~ 247 (722)
T 1rqg_A 170 NPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPW-KPNVK-NMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMK 247 (722)
T ss_dssp SCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCC-CHHHH-HHHHHHHTTCCCCEECEECCSSSCBCSCCCSSST
T ss_pred CCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHCCCcccceeccccCccccCccccCCC
Confidence 699999999999999999999999999999999998887 76654 7899999 89999999999999999998653333
Q ss_pred CEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCccccc-CCCC--Chhhhhh
Q 000999 518 EEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIH-YPFE--NAEHFEN 594 (1193)
Q Consensus 518 ~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~-~p~~--~~~~f~~ 594 (1193)
++ ++++|||+.+-..+..+ |+.. ..+.|+.
T Consensus 248 ~~-----------------------------------------------~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~ 280 (722)
T 1rqg_A 248 GK-----------------------------------------------VLYVWFEAPIGYISITIEHFKRIGKPNEWKK 280 (722)
T ss_dssp TC-----------------------------------------------EECHHHHGGGHHHHHHHHHHHHTTCTTTTHH
T ss_pred CC-----------------------------------------------EEEEEeccccchhhhHHHHHhhcCCchHHHh
Confidence 33 45555553221111111 1110 1123555
Q ss_pred cCCc------eeEEecccCccc----hHHHHHHHHH-----HccC-CCCccEEEEEeeEEccCCccccccCCCCCChhhh
Q 000999 595 NFPG------QFIAEGLDQTRG----WFYTLMVLST-----ALFG-KPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEV 658 (1193)
Q Consensus 595 ~~Pa------d~~~~G~D~~r~----Wf~~l~~~~~-----~l~~-~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~l 658 (1193)
|||+ ++++.|+|+++| |.+.+++.+. .+.+ ..| ++|++||||++ +|+|||||+||+|+|.++
T Consensus 281 ~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~ 358 (722)
T 1rqg_A 281 YWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEF 358 (722)
T ss_dssp HHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHH
T ss_pred ccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHH
Confidence 5552 378999999987 4454332220 0112 455 99999999998 999999999999999999
Q ss_pred HhhcChhHHHHhHhhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchh
Q 000999 659 INDYGADALRLYLINSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVL 737 (1193)
Q Consensus 659 i~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 737 (1193)
|++||+|+|||||++..+ .++|++|+++.+.+.++ +++++++|.++.+...+.. ..+ +..|.. ......
T Consensus 359 i~~ygaDalR~~ll~~~~-~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k---~~~-~~~~~~-----~~~~~~ 428 (722)
T 1rqg_A 359 LDVFPADYLRYYLTTIMP-ETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNR---YFD-GVVPER-----GELDEL 428 (722)
T ss_dssp TTTSCHHHHHHHHHHTCC-SSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHH---HST-TBCCCC-----CCCCHH
T ss_pred HHhcCchHHHHHHHhcCC-CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC-CCCCCc-----ccCCHH
Confidence 999999999999998744 47899999999877544 3567777754443333221 111 222211 134678
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 000999 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPF 817 (1193)
Q Consensus 738 D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf 817 (1193)
|+|++++++.+++.+.++|++|+|++|++.+++|++ ++|||++.+++|.....+.++..+++++++++|+.+++||+||
T Consensus 429 d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~-~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~ 507 (722)
T 1rqg_A 429 DREALEEIEKAFKEVGELIMNYRFKDALKRVMSLAS-FGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPF 507 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999995 8999999999997654444556678899999999999999999
Q ss_pred chhHHHHHHHHhhc
Q 000999 818 TPFFTEALYQNMRK 831 (1193)
Q Consensus 818 ~PfiaEei~~~L~~ 831 (1193)
|||+||+||++|+.
T Consensus 508 ~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 508 LPDASEKIWHLLNL 521 (722)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHcCC
Confidence 99999999999974
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.6e-81 Score=768.85 Aligned_cols=473 Identities=19% Similarity=0.315 Sum_probs=393.7
Q ss_pred CCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHH
Q 000999 37 RCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDK 116 (1193)
Q Consensus 37 ~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~ 116 (1193)
.+++.|++++|||||||.|||||+++++++|+++||+||+||+|++++||||||+|||.++++ .|+++
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-~g~~~----------- 76 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK-EGIPA----------- 76 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-HTSCH-----------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-cCCCH-----------
Confidence 477889999999999999999999999999999999999999999999999999999999987 47654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccc
Q 000999 117 YNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAG 196 (1193)
Q Consensus 117 f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~ 196 (1193)
++++++|.+++++++++|| +++|++++|+++.|++.++++|.+|+++|+||++.++|+|||+|+|++++.|+.
T Consensus 77 -----~~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~ 149 (524)
T 2x1l_A 77 -----AELARRNSDVFQRLQEKLN--ISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETT 149 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcC--CcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhc
Confidence 2478889999999999999 567788999999999999999999999999999999999999999988755431
Q ss_pred ccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCC
Q 000999 197 QNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSS 276 (1193)
Q Consensus 197 ~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 276 (1193)
.
T Consensus 150 ~------------------------------------------------------------------------------- 150 (524)
T 2x1l_A 150 E------------------------------------------------------------------------------- 150 (524)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccc
Q 000999 277 AANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVT 356 (1193)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~ 356 (1193)
T Consensus 151 -------------------------------------------------------------------------------- 150 (524)
T 2x1l_A 151 -------------------------------------------------------------------------------- 150 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccc
Q 000999 357 SDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLT 436 (1193)
Q Consensus 357 ~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~ 436 (1193)
|+ | |
T Consensus 151 ---g~------------~----------------------------------------------------G--------- 154 (524)
T 2x1l_A 151 ---QP------------D----------------------------------------------------G--------- 154 (524)
T ss_dssp ---CT------------T----------------------------------------------------S---------
T ss_pred ---CC------------C----------------------------------------------------C---------
Confidence 00 0 0
Q ss_pred ccCCccc-CCCCCeEEeeeCccccccHHHHHHHHHhhcC-C-ccccchhhhHhHHhhh-hcCCceeeccccC-CCCcccE
Q 000999 437 HSYPFCW-RSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ-T-YWVPDYVKEKRFHNWL-ENARDWAVSRSRF-WGTPLPV 511 (1193)
Q Consensus 437 h~yp~c~-R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~-~-~~~P~~~~~~r~~~wl-~~l~DW~ISRqr~-WG~pIPi 511 (1193)
+.|+ |||+|++++.++|||++++++++++++.+++ . .+.|+.. .+++.+|+ ++++||||||||+ ||+|||
T Consensus 155 ---~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~-~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP- 229 (524)
T 2x1l_A 155 ---TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDAR-RNEIVSFVSGGLKDLSISRTTFDWGVPVP- 229 (524)
T ss_dssp ---CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHH-HHHHHHHHTTCCCCEECEESSCCSSCEET-
T ss_pred ---CccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHH-HHHHHHHHHcCCcccceECCCCCcCccCC-
Confidence 2588 9999999999999999999999999999974 3 3568874 47889998 5799999999996 999999
Q ss_pred EEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhh
Q 000999 512 WTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEH 591 (1193)
Q Consensus 512 w~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~ 591 (1193)
| + ..+|+||||||++++++..+||.++...
T Consensus 230 ~---~-----------------------------------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~ 259 (524)
T 2x1l_A 230 D---H-----------------------------------------------PDHVMYVWVDALTNYLTGVGFPDTESES 259 (524)
T ss_dssp T---E-----------------------------------------------EEEEECHHHHHHTHHHHTTTTTCTTSHH
T ss_pred C---C-----------------------------------------------CCCEEEEecCCchHHHHHcCCCCCchHH
Confidence 2 0 0147899999999998899999876668
Q ss_pred hhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhH
Q 000999 592 FENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYL 671 (1193)
Q Consensus 592 f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL 671 (1193)
|+++||+|++++|+||++||.....+...+ .|.+||+++++||||++ +|+|||||+||+|+|.++|++||+|++||||
T Consensus 260 ~~~~~p~di~~~G~D~~~fh~~~~~a~l~~-~g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~l 337 (524)
T 2x1l_A 260 FRRYWPADLHMIGKDIIRFHTVYWPAFLMS-AGLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFL 337 (524)
T ss_dssp HHHHCSCSEEEEEGGGHHHHHTHHHHHHHH-HTCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHH
T ss_pred HHhhCCCeEEEEeechhHhHHHHHHHHHHH-CCCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHH
Confidence 999999999999999997642211112222 26688999999999998 8999999999999999999999999999999
Q ss_pred hhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHH
Q 000999 672 INSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVH 750 (1193)
Q Consensus 672 ~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~ 750 (1193)
++..+ .++|++|+++.+.+..+ ++.++|+|+++++...+... . ++..+.. ......|+|++++++.+++
T Consensus 338 l~~~~-~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~---~-~~~~~~~-----~~~~~~d~~l~~~l~~~~~ 407 (524)
T 2x1l_A 338 LREVP-FGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKN---L-GAAVPDP-----GEFTDEDTALLAAADALLE 407 (524)
T ss_dssp HHHSC-TTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---S-TTBCCCC-----CCCCHHHHHHHHHHHTHHH
T ss_pred HhcCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CCCCCCc-----cccchhHHHHHHHHHHHHH
Confidence 98333 37899999999987654 36677888766554433211 1 1111210 1346789999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhcc-ccCCC---ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000999 751 FVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKR-LKGRS---GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALY 826 (1193)
Q Consensus 751 ~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~r-l~~~~---~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~ 826 (1193)
.+.++|++|+|+.|+..|++|++ ++|+|++.+|+| +..+. +.+...+++++++++|+.+++||+|||||+||+||
T Consensus 408 ~v~~a~~~~~~~~a~~~l~~l~~-~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~ 486 (524)
T 2x1l_A 408 RVREHFDVPAMHLALEAIWSVLG-AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLL 486 (524)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999997 789999999985 44332 12334567889999999999999999999999999
Q ss_pred HHhhc
Q 000999 827 QNMRK 831 (1193)
Q Consensus 827 ~~L~~ 831 (1193)
++|+.
T Consensus 487 ~~L~~ 491 (524)
T 2x1l_A 487 DLLGQ 491 (524)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 99974
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2.2e-80 Score=759.53 Aligned_cols=467 Identities=20% Similarity=0.284 Sum_probs=385.7
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKY 117 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f 117 (1193)
++++|+++.|+|||||.|||||++++++.|+++||+||+||+|.+++|||+||+||+..+++ .|++++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~-~g~~~~----------- 90 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK-EGITPR----------- 90 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-HTSCHH-----------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHH-cCCCHH-----------
Confidence 46789999999999999999999999999999999999999999999999999999999875 677653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccc
Q 000999 118 NEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQ 197 (1193)
Q Consensus 118 ~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~ 197 (1193)
+++++|.+.+++++++|| |+||.+++|+++.|.+.++++|.+|+++|++|++...++||+.|++++++.|+..
T Consensus 91 -----~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~ 163 (536)
T 4dlp_A 91 -----DLADRNTSAFRRMAEVLN--SSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEV 163 (536)
T ss_dssp -----HHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEE
T ss_pred -----HHHHHHHHHHHHHHHHcC--CCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhc
Confidence 478889999999999999 6777889999999999999999999999999999999999999999887655410
Q ss_pred cccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCC
Q 000999 198 NYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSA 277 (1193)
Q Consensus 198 ~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (1193)
T Consensus 164 -------------------------------------------------------------------------------- 163 (536)
T 4dlp_A 164 -------------------------------------------------------------------------------- 163 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCcccc
Q 000999 278 ANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTS 357 (1193)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~ 357 (1193)
+
T Consensus 164 ------------------------------------------------------------------~------------- 164 (536)
T 4dlp_A 164 ------------------------------------------------------------------R------------- 164 (536)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred ------------------------------------------------------------------C-------------
Confidence 0
Q ss_pred CCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccc
Q 000999 358 DSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTH 437 (1193)
Q Consensus 358 ~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h 437 (1193)
++|
T Consensus 165 --------------------------------------~~g--------------------------------------- 167 (536)
T 4dlp_A 165 --------------------------------------ADG--------------------------------------- 167 (536)
T ss_dssp --------------------------------------TTS---------------------------------------
T ss_pred --------------------------------------CCC---------------------------------------
Confidence 000
Q ss_pred cCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCC-c-cccchhhhHhHHhhhh-cCCceeecccc-CCCCcccEEE
Q 000999 438 SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT-Y-WVPDYVKEKRFHNWLE-NARDWAVSRSR-FWGTPLPVWT 513 (1193)
Q Consensus 438 ~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~-~-~~P~~~~~~r~~~wl~-~l~DW~ISRqr-~WG~pIPiw~ 513 (1193)
-.|+|||+|++++.++|||++++++++++++++++. . +.|+.. .+++.+||+ +++|||||||| +||+|||.
T Consensus 168 --~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~-~~~~~~~l~~~l~D~~ISR~~~~WGipiP~-- 242 (536)
T 4dlp_A 168 --VRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAER-RNEIVSFVKSGLKDLSISRTTFDWGIPVPG-- 242 (536)
T ss_dssp --CEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHH-HHHHHHHHHTCCCCEECEEC--CCSCBCTT--
T ss_pred --CcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHH-HHHHHHHHhcCCCccCCccCCCcCCeeCCC--
Confidence 158899999999999999999999999999999764 4 468874 588999998 79999999997 59999992
Q ss_pred cCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhh
Q 000999 514 SEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFE 593 (1193)
Q Consensus 514 ~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~ 593 (1193)
+ ..+|+||||||++++++..+||.+ .+.|+
T Consensus 243 --~-----------------------------------------------~~~v~yvWfda~~~y~s~~~~~~~-~~~~~ 272 (536)
T 4dlp_A 243 --D-----------------------------------------------EKHVMYVWVDALTNYITALGYPDT-TDERW 272 (536)
T ss_dssp --C-----------------------------------------------TTSEECHHHHHHHHHHHTTTTTCT-TSGGG
T ss_pred --C-----------------------------------------------CCCceEEeeCCcHHHHHhcCCCCC-chHHH
Confidence 1 125899999999999999999964 45799
Q ss_pred hcCCceeEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHH
Q 000999 594 NNFPGQFIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRL 669 (1193)
Q Consensus 594 ~~~Pad~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~ 669 (1193)
++||+|++++|+||+|| |+++|+++ +.+||++|++||||++ +|+|||||+||+|+|.+++++||+|++||
T Consensus 273 ~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-----g~~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~~~GaDalR~ 346 (536)
T 4dlp_A 273 AYWPANAHIIGKDISRFHAVYWPAFLMSA-----QLPLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRY 346 (536)
T ss_dssp GGCSCSEEEEEGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCEEC-------------CCHHHHHHHHCHHHHHH
T ss_pred hhCCcceEEeechHHHHHHHHHHHHHHHC-----CCCCCcEEEeeeeEee-CCceecccCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999999998 45555432 5578999999999996 99999999999999999999999999999
Q ss_pred hHhhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHH
Q 000999 670 YLINSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSL 748 (1193)
Q Consensus 670 yL~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~l 748 (1193)
||++..+ .++|++|+++.+.+..+ +++++++|+++++...+.. . ..++.|.. ......|+||+++++++
T Consensus 347 ~ll~~~~-~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~---~-~~~~~p~~-----~~~~~~d~~ll~~l~~~ 416 (536)
T 4dlp_A 347 FLMREVP-FGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAK---N-CEGKVPQP-----GAFSEADKAILDQADAA 416 (536)
T ss_dssp HHHHHSC-TTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---H-STTBCCCC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHhcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-cCCCCCCc-----ccCCHHHHHHHHHHHHH
Confidence 9998433 47899999999877544 4678999987666554432 1 12333321 13578999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000999 749 VHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQN 828 (1193)
Q Consensus 749 i~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~ 828 (1193)
++.+.++|++|+|++|++.+++|+ +++|||++.+|+|.....+.+.+.+++.+++++|+.+++||+|||||+||+||++
T Consensus 417 ~~~v~~a~~~~~~~~a~~~l~~l~-~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~ 495 (536)
T 4dlp_A 417 LETARKAMDDQALHLALGAIFAVV-AEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDI 495 (536)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 999999999999999999999998 4899999999985322223445667899999999999999999999999999999
Q ss_pred hhc
Q 000999 829 MRK 831 (1193)
Q Consensus 829 L~~ 831 (1193)
|+.
T Consensus 496 L~~ 498 (536)
T 4dlp_A 496 LAV 498 (536)
T ss_dssp TTC
T ss_pred cCC
Confidence 974
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=7.7e-81 Score=767.42 Aligned_cols=489 Identities=19% Similarity=0.263 Sum_probs=392.5
Q ss_pred cCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCH
Q 000999 35 RTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGI 114 (1193)
Q Consensus 35 ~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~ 114 (1193)
.+.++++|++++|||||||.|||||+++++++|+++||+||+||+|.+++|||+||+||+..+++ .|++++
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~-~g~~~~-------- 83 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-LGITPE-------- 83 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HTSCHH--------
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHH-hCCCHH--------
Confidence 45688999999999999999999999999999999999999999999999999999999999986 577543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccc
Q 000999 115 DKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFE 194 (1193)
Q Consensus 115 ~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~E 194 (1193)
+++++|.+.+++++++|| |+||+++.|+++.|.+.++++|.+|+++|+||++.+.++|||.|+|+|++.+
T Consensus 84 --------~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~ 153 (560)
T 3h99_A 84 --------QMIGEMSQEHQTDFAGFN--ISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRF 153 (560)
T ss_dssp --------HHHHHHHHHHHHHHHHTT--CCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGG
T ss_pred --------HHHHHHHHHHHHHHHHcC--CCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchh
Confidence 377889999999999999 6788899999999999999999999999999999999999999999999876
Q ss_pred ccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCC
Q 000999 195 AGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPK 274 (1193)
Q Consensus 195 v~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~ 274 (1193)
|+. +.| .+ -.++
T Consensus 154 v~g-----------------------------~cp----~c----~~~~------------------------------- 165 (560)
T 3h99_A 154 VKG-----------------------------TCP----KC----KSPD------------------------------- 165 (560)
T ss_dssp EEE-----------------------------ECT----TT----CCSS-------------------------------
T ss_pred cCC-----------------------------CCC----CC----CCcc-------------------------------
Confidence 631 000 00 0000
Q ss_pred CCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecc--cccccccccCcccccccCCceEEEEec
Q 000999 275 SSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGA--YLVGKKYEPLFDYFKEFSDVAFRVIAD 352 (1193)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~--~L~G~~y~Pl~~~~~~~~~~~~~vi~~ 352 (1193)
. .|. +..|..|.|
T Consensus 166 -----------------~------------------------------~gd~ce~cg~~~~~------------------ 180 (560)
T 3h99_A 166 -----------------Q------------------------------YGDNCEVCGATYSP------------------ 180 (560)
T ss_dssp -----------------E------------------------------ETTBCTTTCCBCCG------------------
T ss_pred -----------------c------------------------------ccchhhhccccCCh------------------
Confidence 0 000 011111100
Q ss_pred CccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeee
Q 000999 353 NYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKT 432 (1193)
Q Consensus 353 ~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~ 432 (1193)
T Consensus 181 -------------------------------------------------------------------------------- 180 (560)
T 3h99_A 181 -------------------------------------------------------------------------------- 180 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhh-cCCceeecccc-CCCCccc
Q 000999 433 GSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLE-NARDWAVSRSR-FWGTPLP 510 (1193)
Q Consensus 433 ~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~-~l~DW~ISRqr-~WG~pIP 510 (1193)
.+ ...|+|+|||++++++.++|||++++++++++++++++..| |+.+ .+.+.+||+ +++|||||||+ +||+|||
T Consensus 181 ~~--l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~-~~~~-~~~~~~~l~~~l~D~~IsR~~~~WG~~iP 256 (560)
T 3h99_A 181 TE--LIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL-QEQV-ANKMQEWFESGLQQWDISRDAPYFGFEIP 256 (560)
T ss_dssp GG--CEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCS-CHHH-HHHHHHHHHHCCCCEECEEESSCSSCBCT
T ss_pred hh--hcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHhcCCCCCCccccCCcCCeeCC
Confidence 00 11389999999999999999999999999999999988555 5554 578999998 89999999999 8999999
Q ss_pred EEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccc-cCCCCC-
Q 000999 511 VWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYI-HYPFEN- 588 (1193)
Q Consensus 511 iw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~-~~p~~~- 588 (1193)
. ++ ..|++||||+...+++.. +|+.+.
T Consensus 257 ~----~~-----------------------------------------------~~viyvW~da~~~y~s~~~~~~~~~~ 285 (560)
T 3h99_A 257 N----AP-----------------------------------------------GKYFYVWLDAPIGLMGSFKNLCDKRG 285 (560)
T ss_dssp T----CT-----------------------------------------------TEEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred C----CC-----------------------------------------------CceEEeCcccchhHHHHHHHHhhccC
Confidence 3 21 137888998776555444 455321
Q ss_pred -hhhhhhcCCce-----eEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhh
Q 000999 589 -AEHFENNFPGQ-----FIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEV 658 (1193)
Q Consensus 589 -~~~f~~~~Pad-----~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~l 658 (1193)
...|+++||+| +++.|+||+++ |+..|++++ + ..| ++|++||||++ +|+|||||+||+|+|.++
T Consensus 286 ~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g--~--~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~ 359 (560)
T 3h99_A 286 DSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSN--F--RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTW 359 (560)
T ss_dssp CSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTT--B--CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHH
T ss_pred ChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCC--C--CCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHH
Confidence 25789999999 99999999994 444554433 2 445 99999999998 999999999999999999
Q ss_pred HhhcChhHHHHhHhhCCccccccccccHhHHHHH-HHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchh
Q 000999 659 INDYGADALRLYLINSPVVRAETLRFKKDGVFAV-VKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVL 737 (1193)
Q Consensus 659 i~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~-~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 737 (1193)
|++||+|++||||++..+...+|++|+++.+.+. .+++++++||++..+...+.. .. ++..+ ....
T Consensus 360 i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~---~~-~~~~~---------~~~~ 426 (560)
T 3h99_A 360 LNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RF-DGVLA---------SELA 426 (560)
T ss_dssp HHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHH---HS-TTBCC---------SSCS
T ss_pred HHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-CCCCC---------Cccc
Confidence 9999999999999986553337999999988653 356889999976544443321 11 11111 1357
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCC--CChHHHHHHHHHHHHHHHHHHHhcC
Q 000999 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGR--SGEDDCRIALSTLYNVLLTSCKVMA 815 (1193)
Q Consensus 738 D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~--~~~~~~~~a~~tL~~vL~~l~~LLa 815 (1193)
|+||+++++.+++.+.++|++|+|++|++.+++|+ +++|||++.+++|...+ ...+.+.+++.+++++|+.+++||+
T Consensus 427 d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~-~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~ 505 (560)
T 3h99_A 427 DPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA-DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLK 505 (560)
T ss_dssp CHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999 58999999999874332 2345566788899999999999999
Q ss_pred CCchhHHHHHHHHhh
Q 000999 816 PFTPFFTEALYQNMR 830 (1193)
Q Consensus 816 Pf~PfiaEei~~~L~ 830 (1193)
|||||+||+||++|+
T Consensus 506 P~~P~~aeei~~~L~ 520 (560)
T 3h99_A 506 PVLPKLTERAEAFLN 520 (560)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHcC
Confidence 999999999999997
No 13
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.5e-80 Score=754.78 Aligned_cols=457 Identities=21% Similarity=0.299 Sum_probs=383.9
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHH
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYN 118 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~ 118 (1193)
+++|+++.|||||||.|||||+++++++|+++||+||+||+|++++|||+||+||+..+++ .|+++.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-~g~~~~------------ 68 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA-AGEDPK------------ 68 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH-HTSCHH------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH-cCCCHH------------
Confidence 3579999999999999999999999999999999999999999999999999999999987 477542
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQN 198 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~ 198 (1193)
+++++|.+.+++++++||+ +||.+++|+++.|.+.++++|.+|+++|+||++.+.++|||.|+|++++.++
T Consensus 69 ----~~~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l--- 139 (500)
T 2d5b_A 69 ----AFVDRVSGRFKRAWDLLGI--AYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL--- 139 (500)
T ss_dssp ----HHHHHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS---
T ss_pred ----HHHHHHHHHHHHHHHHhCC--cCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhc---
Confidence 3788899999999999995 6667899999999999999999999999999999999999999987752211
Q ss_pred ccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCC
Q 000999 199 YKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAA 278 (1193)
Q Consensus 199 y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (1193)
T Consensus 140 -------------------------------------------------------------------------------- 139 (500)
T 2d5b_A 140 -------------------------------------------------------------------------------- 139 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccC
Q 000999 279 NGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSD 358 (1193)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~ 358 (1193)
+
T Consensus 140 ---------------------------------------~---------------------------------------- 140 (500)
T 2d5b_A 140 ---------------------------------------V---------------------------------------- 140 (500)
T ss_dssp ---------------------------------------B----------------------------------------
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccccc
Q 000999 359 SGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHS 438 (1193)
Q Consensus 359 ~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~ 438 (1193)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC-Ccc-ccchhhhHhHHhhhh-cCCceeecc--cc-CCCCcccEE
Q 000999 439 YPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ-TYW-VPDYVKEKRFHNWLE-NARDWAVSR--SR-FWGTPLPVW 512 (1193)
Q Consensus 439 yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~-~~~-~P~~~~~~r~~~wl~-~l~DW~ISR--qr-~WG~pIPiw 512 (1193)
.++|||||+|++++.++|||++++++++++++.+++ ..| .|+.. .+++.+|++ +++|||||| || .||+|||.
T Consensus 141 ~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~- 218 (500)
T 2d5b_A 141 EGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGY-RNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW- 218 (500)
T ss_dssp TTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHH-HHHHHHHHTSCCCCEECEEETTTCCSSCEETT-
T ss_pred CCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHH-HHHHHHHHhcCCCCeecccccccccCccccCC-
Confidence 025999999999999999999999999999999987 344 58874 478899995 689999999 88 59999993
Q ss_pred EcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhh
Q 000999 513 TSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHF 592 (1193)
Q Consensus 513 ~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f 592 (1193)
+ .++|+||||||++++++..+||.+ .+ |
T Consensus 219 ---~-----------------------------------------------~~~v~~vWfds~~~y~~~~g~~~~-~~-~ 246 (500)
T 2d5b_A 219 ---D-----------------------------------------------ENHVTFVWFDALLNYVSALDYPEG-EA-Y 246 (500)
T ss_dssp ---E-----------------------------------------------EEEEECHHHHHHTHHHHTTTTTTC-HH-H
T ss_pred ---C-----------------------------------------------CCCeeEEccccchhhHHHcCCCCC-ch-H
Confidence 1 024789999999999999999964 33 8
Q ss_pred hhcCCceeEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHH
Q 000999 593 ENNFPGQFIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALR 668 (1193)
Q Consensus 593 ~~~~Pad~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR 668 (1193)
+++||+|++++|+||+++ |++.++++ |..||+++++||||++++|+|||||+||+|+|.+++++||+|++|
T Consensus 247 ~~~~p~di~~~G~D~~~fh~~~~~a~~~~~-----g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR 321 (500)
T 2d5b_A 247 RTFWPHAWHLIGKDILKPHAVFWPTMLKAA-----GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALR 321 (500)
T ss_dssp HHHGGGEEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHH
T ss_pred HHcCCCeEEEEeechhhhHHHHHHHHHHHc-----CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHH
Confidence 889999999999999995 44444332 568899999999999989999999999999999999999999999
Q ss_pred HhHhhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHH
Q 000999 669 LYLINSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQS 747 (1193)
Q Consensus 669 ~yL~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~ 747 (1193)
|||+++.+ .++|++|+++.+.+..+ ++.++++|+...+...+.. ... +..+ . ..++|++++++.
T Consensus 322 ~~ll~~~~-~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~---~~~-~~~~--------~--~~~~~l~~~l~~ 386 (500)
T 2d5b_A 322 YYLLREIP-YGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FAE-GRIP--------E--PVAGEELAEGTG 386 (500)
T ss_dssp HHHHHHSC-TTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HST-TBCC--------C--CCCCGGGGGGGG
T ss_pred HHHHhcCC-cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC-CCCC--------c--hhHHHHHHHHHH
Confidence 99997433 37899999999877543 4567777765444332221 111 1111 0 114899999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000999 748 LVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQ 827 (1193)
Q Consensus 748 li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~ 827 (1193)
+++.+.++|++|+|+.|++.|++|++ ++|+|++.+|+|....+..++..+++.+++++|+.+++||+|||||+||+||+
T Consensus 387 ~~~~v~~a~~~~~~~~a~~~l~~l~~-~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~ 465 (500)
T 2d5b_A 387 LAGRLRPLVRELKFHVALEEAMAYVK-ALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRR 465 (500)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 99999999999999999999999996 78999999998743322223456788999999999999999999999999999
Q ss_pred Hhhc
Q 000999 828 NMRK 831 (1193)
Q Consensus 828 ~L~~ 831 (1193)
+|+.
T Consensus 466 ~l~~ 469 (500)
T 2d5b_A 466 ALGL 469 (500)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9974
No 14
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.8e-79 Score=753.63 Aligned_cols=481 Identities=19% Similarity=0.210 Sum_probs=397.9
Q ss_pred cCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCC
Q 000999 26 IDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKR 105 (1193)
Q Consensus 26 ~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~ 105 (1193)
...|.+... .++++|+++.|+|||||.|||||++++++.|+++||+||+||+|.+++|+|+||+||+..+++ .|+++
T Consensus 14 ~~~~~~~~~--~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-~g~~p 90 (564)
T 3kfl_A 14 AQTQGPGSM--KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-QGVSP 90 (564)
T ss_dssp ------------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-TTCCH
T ss_pred hhhcCCccc--cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-cCCCH
Confidence 345655432 456789999999999999999999999999999999999999999999999999999999975 68765
Q ss_pred cchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCC
Q 000999 106 RDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTG 185 (1193)
Q Consensus 106 ~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~ 185 (1193)
+ +++++|.+.+++++++|| |++|++++|+++.|.+.++++|.+|+++|+||++...++||+.
T Consensus 91 ~----------------~~~~~~~~~~~~~~~~lg--i~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 152 (564)
T 3kfl_A 91 M----------------DFTTSVSSEFKQCFQEMN--YDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVS 152 (564)
T ss_dssp H----------------HHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETT
T ss_pred H----------------HHHHHHHHHHHHHHHHcC--CCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCC
Confidence 3 488899999999999999 5566788999999999999999999999999999999999999
Q ss_pred CCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhh
Q 000999 186 CKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRL 265 (1193)
Q Consensus 186 ~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~ 265 (1193)
|+++|++.|+..+
T Consensus 153 ~~~~l~~~~~~~~------------------------------------------------------------------- 165 (564)
T 3kfl_A 153 DESFLTAQNVADG------------------------------------------------------------------- 165 (564)
T ss_dssp TTEEECGGGEEEE-------------------------------------------------------------------
T ss_pred cCCCCCHHHhccC-------------------------------------------------------------------
Confidence 9999987665100
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCc
Q 000999 266 SALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDV 345 (1193)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~ 345 (1193)
T Consensus 166 -------------------------------------------------------------------------------- 165 (564)
T 3kfl_A 166 -------------------------------------------------------------------------------- 165 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHH
Q 000999 346 AFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKA 425 (1193)
Q Consensus 346 ~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~ 425 (1193)
+|.. |- .|
T Consensus 166 ---------------------~~~~-----------g~-------~c--------------------------------- 173 (564)
T 3kfl_A 166 ---------------------VDRD-----------GK-------PC--------------------------------- 173 (564)
T ss_dssp ---------------------ECTT-----------SC-------EE---------------------------------
T ss_pred ---------------------cCCC-----------CC-------Ee---------------------------------
Confidence 0000 00 00
Q ss_pred CCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC--CccccchhhhHhHHhhhh-cCCceeecc-
Q 000999 426 KGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ--TYWVPDYVKEKRFHNWLE-NARDWAVSR- 501 (1193)
Q Consensus 426 ~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~--~~~~P~~~~~~r~~~wl~-~l~DW~ISR- 501 (1193)
..|.+||+|++++.++|||++++++++++++++++ ..|.|++. .+++.+||+ +++||||||
T Consensus 174 --------------~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~-~~~~~~wl~~gl~D~~ISR~ 238 (564)
T 3kfl_A 174 --------------KVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFR-RREVIKTVEKGLFDLSISRK 238 (564)
T ss_dssp --------------EEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHH-HHHHHHHHHHCCCCEECEEE
T ss_pred --------------ccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHH-HHHHHHHHhCCCCCccccCc
Confidence 01236899999999999999999999999999874 34689874 478999998 899999999
Q ss_pred ---ccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCC
Q 000999 502 ---SRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMP 578 (1193)
Q Consensus 502 ---qr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p 578 (1193)
+++||+|||. + ..+|+||||||++++
T Consensus 239 ~~~~~~WGipiP~----~-----------------------------------------------~~~v~yVWfDa~~~y 267 (564)
T 3kfl_A 239 RESVMNWSIPVPG----D-----------------------------------------------ERHCIYVWLDALFNY 267 (564)
T ss_dssp GGGGTTCSCEETT----E-----------------------------------------------EEEEECHHHHHHTHH
T ss_pred CCCCCCCCeecCC----C-----------------------------------------------CCCEEEEeccCcHHH
Confidence 7899999992 1 135899999999999
Q ss_pred cccccC-CCCChh-----hh--hhcCCceeEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCcccc
Q 000999 579 YAYIHY-PFENAE-----HF--ENNFPGQFIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMS 646 (1193)
Q Consensus 579 ~a~~~~-p~~~~~-----~f--~~~~Pad~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMS 646 (1193)
++.++| |.++.+ .| +++||+|++++|+||+|| |+++|+++ |.+||++|++|||| +.+|+|||
T Consensus 268 ~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~-----g~~~~~~v~~hg~v-~~~G~KMS 341 (564)
T 3kfl_A 268 YTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSA-----ELPLPERLVSHGWW-TKDHKKIS 341 (564)
T ss_dssp HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCE-EETTEECC
T ss_pred HHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhC-----CCCCCcEEEEcccE-eeCCcccc
Confidence 999998 865433 27 899999999999999998 56666543 45789999999999 58999999
Q ss_pred ccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCc
Q 000999 647 KKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPL 725 (1193)
Q Consensus 647 KS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~ 725 (1193)
||+||+|+|.+++++||+|++||||++..+ .++|++|+++.+.+..+ +++++++|+++++...+. ..+++.|.
T Consensus 342 KS~GNvV~p~d~i~~~G~DalR~~ll~~~~-~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~-----~~~g~~p~ 415 (564)
T 3kfl_A 342 KSLGNAFDPVEKAKEFGIDALKYFLMRESN-FQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI-----NVNGMWPE 415 (564)
T ss_dssp TTTTCCCCHHHHHHHHCHHHHHHHHHHHCC-SSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT-----STTSBCCC
T ss_pred ccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCcCCC
Confidence 999999999999999999999999998433 47899999999987544 577889997766554332 11233332
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCChHHHHHHHHHHH
Q 000999 726 DLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKR-LKGRSGEDDCRIALSTLY 804 (1193)
Q Consensus 726 ~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~r-l~~~~~~~~~~~a~~tL~ 804 (1193)
. ......|+|++++++.+++.+.++|++|+|++|++.+++|++ ++|+|++.+++| +.. .+.+.+.+++.+++
T Consensus 416 ~-----~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~-~~n~Y~~~~kpW~l~~-~~~~~~~~~~~~l~ 488 (564)
T 3kfl_A 416 P-----AEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLR-SLNAYVTENAPWKLVK-MDTARLGTVLYVTM 488 (564)
T ss_dssp C-----CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHCHHHHTT-TCHHHHHHHHHHHH
T ss_pred C-----CCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHHHHHHhcCChhhhc-CCHHHHHHHHHHHH
Confidence 1 235688999999999999999999999999999999999996 899999999984 443 34455678899999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHhhc
Q 000999 805 NVLLTSCKVMAPFTPFFTEALYQNMRK 831 (1193)
Q Consensus 805 ~vL~~l~~LLaPf~PfiaEei~~~L~~ 831 (1193)
++|+.+++||+|||||+||+||++|+.
T Consensus 489 ~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 489 EGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 999999999999999999999999974
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.1e-78 Score=738.98 Aligned_cols=453 Identities=24% Similarity=0.383 Sum_probs=354.7
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHH
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYN 118 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~ 118 (1193)
+++|+++.|||||||.|||||+++++++|+++||+||+||+|++++||||||+|||.++++ .|++++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-~g~~~~------------ 70 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-LGISPK------------ 70 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-SSSCHH------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-cCCCHH------------
Confidence 5789999999999999999999999999999999999999999999999999999999986 576542
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQN 198 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~ 198 (1193)
+++++|.+.+++++++|| ++||.+|+|+++.|++.++++|.+|+++|+||++.++++|||.|+|++++.|+
T Consensus 71 ----~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~--- 141 (497)
T 2csx_A 71 ----ELVDRNAERFKKLWEFLK--IEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAEL--- 141 (497)
T ss_dssp ----HHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------
T ss_pred ----HHHHHHHHHHHHHHHHhC--CcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHh---
Confidence 377889999999999999 57778999999999999999999999999999999999999999987763221
Q ss_pred ccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCC
Q 000999 199 YKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAA 278 (1193)
Q Consensus 199 y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (1193)
T Consensus 142 -------------------------------------------------------------------------------- 141 (497)
T 2csx_A 142 -------------------------------------------------------------------------------- 141 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccC
Q 000999 279 NGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSD 358 (1193)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~ 358 (1193)
.
T Consensus 142 ---------------------------------------~---------------------------------------- 142 (497)
T 2csx_A 142 ---------------------------------------A---------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccccc
Q 000999 359 SGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHS 438 (1193)
Q Consensus 359 ~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~ 438 (1193)
.
T Consensus 143 ------------------------------~------------------------------------------------- 143 (497)
T 2csx_A 143 ------------------------------E------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCC--ccccchhhhHhHHhhhh-cCCceeecc--cc-CCCCcccEE
Q 000999 439 YPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT--YWVPDYVKEKRFHNWLE-NARDWAVSR--SR-FWGTPLPVW 512 (1193)
Q Consensus 439 yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~--~~~P~~~~~~r~~~wl~-~l~DW~ISR--qr-~WG~pIPiw 512 (1193)
.++|||||+|++++.++|||++++++++++++++++. .+.|+. ..+++.+|++ +++|||||| || +||+|+|.+
T Consensus 144 ~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~-~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~ 222 (497)
T 2csx_A 144 DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDY-RRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD 222 (497)
T ss_dssp --------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHH-HHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE
T ss_pred CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHH-HHHHHHHHHhcCCccccccccCCCCCCceecCCC
Confidence 0469999999999999999999999999999999863 356776 4578899996 689999999 77 599999931
Q ss_pred EcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhh
Q 000999 513 TSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHF 592 (1193)
Q Consensus 513 ~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f 592 (1193)
+ .++++|||||++.+.+.+ + +.+.
T Consensus 223 ----~-----------------------------------------------~~~i~vW~ds~~~~~s~~--~--~~~~- 246 (497)
T 2csx_A 223 ----P-----------------------------------------------EHTIYVWFDALFNYISAL--E--DKVE- 246 (497)
T ss_dssp ----E-----------------------------------------------EEEECSHHHHHTHHHHTT--T--TTHH-
T ss_pred ----C-----------------------------------------------CceEEEecccchhhcccC--C--Ccch-
Confidence 0 146789999987654443 2 1111
Q ss_pred hhcCCceeEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHH
Q 000999 593 ENNFPGQFIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALR 668 (1193)
Q Consensus 593 ~~~~Pad~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR 668 (1193)
++||+|++++|+||+++ |++.++++ |..||+++++||||++ +|+|||||+||+|+|.+++++||+|++|
T Consensus 247 -~~~p~di~~~G~D~~~~H~~~~~a~l~~~-----g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR 319 (497)
T 2csx_A 247 -IYWPADLHLVGKDILRFHTVYWPAFLMSL-----GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVR 319 (497)
T ss_dssp -HHCSCSCEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHH
T ss_pred -hhCCceEEEeecchhHhHHHHHHHHHHHc-----CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHH
Confidence 56799999999999995 44444322 6689999999999997 9999999999999999999999999999
Q ss_pred HhHhhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHH
Q 000999 669 LYLINSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQS 747 (1193)
Q Consensus 669 ~yL~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~ 747 (1193)
|||+++.+ ..+|++|+++.+.+..+ ++.++++|++..+...+.... . +.. . ...|+|++++++.
T Consensus 320 ~~ll~~~~-~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~---~-~~~---------~-~~~d~~l~~~l~~ 384 (497)
T 2csx_A 320 YFLLREVP-FGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFL---G-GEV---------S-GARDEEYAKIAQE 384 (497)
T ss_dssp HHHHHSSC-TTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHS---T-TCB---------C-CCCCTTHHHHHHH
T ss_pred HHHHhcCC-cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-CCC---------C-chhHHHHHHHHHH
Confidence 99998443 47899999999987654 356788887766555443211 1 100 1 3468999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCC-CChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000999 748 LVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGR-SGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALY 826 (1193)
Q Consensus 748 li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~-~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~ 826 (1193)
+++.+.++|++|+|+.|+..+++|++ ++|+|++.+|+|.... ...++..+++.+++++|+.+++||+|||||+||+||
T Consensus 385 ~~~~v~~~~~~~~~~~a~~~l~~l~~-~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~ 463 (497)
T 2csx_A 385 SIKNYENYMEKVNFYKAIEEILKFTS-YLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEAL 463 (497)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHH
Confidence 99999999999999999999999996 7999999999874322 233455678999999999999999999999999999
Q ss_pred HHhhc
Q 000999 827 QNMRK 831 (1193)
Q Consensus 827 ~~L~~ 831 (1193)
+.|+.
T Consensus 464 ~~L~~ 468 (497)
T 2csx_A 464 QMLGE 468 (497)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 99974
No 16
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=6.5e-40 Score=345.21 Aligned_cols=182 Identities=35% Similarity=0.628 Sum_probs=159.3
Q ss_pred cCCCeEEEEeeecCCC----CcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCC
Q 000999 202 VPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSA 277 (1193)
Q Consensus 202 ~~~~~~~v~f~l~~~~----~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (1193)
++++++||+||+.+.. .+.+|+||||||||||||+||||||+++|+.++. +++.|++++++++++.+.
T Consensus 1 ~~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~--~~~~~i~a~~~~~~~~~~------ 72 (186)
T 1wny_A 1 MQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV--GDEALILEEGLGRKLLGE------ 72 (186)
T ss_dssp --CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEE--TTEEEEEEHHHHHHHHCT------
T ss_pred CccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEe--CCcchHHHHHHHHHHhhc------
Confidence 3689999999997631 1379999999999999999999999999999985 468999999999987651
Q ss_pred CCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCcccc
Q 000999 278 ANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTS 357 (1193)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~ 357 (1193)
.++++ .+++|++|.|++|.|||+++. ++.+||+.++||++
T Consensus 73 ------------------------------------~~~~~-~~~~G~~l~g~~~~~P~~~~~---~~~ipi~~~~~V~~ 112 (186)
T 1wny_A 73 ------------------------------------GTPVL-KTFPGKALEGLPYTPPYPQAL---EKGYFVVLADYVSQ 112 (186)
T ss_dssp ------------------------------------TSCEE-EEEEHHHHTTCBBCCSSCCCC---SSCCBEEECTTCCS
T ss_pred ------------------------------------CcEEE-EEEEcccccCcEEECCccccC---CCEEEEEEeCcCcC
Confidence 16777 899999999999987764321 57899999999999
Q ss_pred CCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccc
Q 000999 358 DSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTH 437 (1193)
Q Consensus 358 ~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h 437 (1193)
++|||+||+|||||++||++|++||| +++++||++|+|++. + |+||+++||++.|++.|+++|++++.+++.|
T Consensus 113 ~~GTG~V~~aPahg~~D~~~~~~~~L-----~i~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~H 185 (186)
T 1wny_A 113 EDGTGIVHQAPAFGAEDLETARVYGL-----PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLH 185 (186)
T ss_dssp SSSCSCEEECGGGCHHHHHHHHHHTC-----CCCCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC---
T ss_pred CCCcccEEEcCCCCHHHHHHHHHcCC-----ceEeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEc
Confidence 99999999999999999999999999 999999999999988 7 9999999999999999999999999999999
Q ss_pred c
Q 000999 438 S 438 (1193)
Q Consensus 438 ~ 438 (1193)
|
T Consensus 186 s 186 (186)
T 1wny_A 186 S 186 (186)
T ss_dssp -
T ss_pred C
Confidence 6
No 17
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.8e-39 Score=383.29 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=116.5
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNE 119 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~ 119 (1193)
.+..+|..+|+|+|.+||||++++++.|+++||+||+||+|.++.|||+||.||+..+++ .|++
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~-~g~~--------------- 87 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE-NKES--------------- 87 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH-TTSC---------------
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH-cCCC---------------
Confidence 356788889999999999999999999999999999999999999999999999999975 5654
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee-ceeccccCCCC
Q 000999 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG-FKVMPYSTGCK 187 (1193)
Q Consensus 120 ~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~-~~~v~wcp~~~ 187 (1193)
|++++++|.+.+++++++||++.|+..++.| .|++.++++|.+|+++|++|++ ...|+||++|-
T Consensus 88 -~~e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 88 -PAALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 6679999999999999999988877665555 8999999999999999999999 78999999876
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.4e-38 Score=374.42 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=111.1
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEE-eeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhC
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN-GLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINS 674 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~ 674 (1193)
|.|+++.|+|++++|+....+++.++++..||+++++| |||+. +|+|||||+||+|+|.+++++ ||+|++||||+++
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~ 322 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGW-DGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG 322 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEec-CCeEcccccCCcCCHHHHhhccCCcchheeEEEec
Confidence 89999999999999999999999999898899999999 78875 899999999999999999999 9999999999985
Q ss_pred CccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHH
Q 000999 675 PVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQ 754 (1193)
Q Consensus 675 ~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~ 754 (1193)
+ ..+|++|+++.+.+. ++.+++|||+++++ .+ + .++.+++.+.+
T Consensus 323 ~--~~~d~~fs~~~l~~~-~~~l~~l~n~~~~~------------~~--~-------------------~~~~~~~~v~~ 366 (414)
T 3c8z_A 323 H--YREDRFWSNEVLDEA-NARLARWRSATALP------------EA--P-------------------DATDVIARVRQ 366 (414)
T ss_dssp C--TTSCBCCCHHHHHHH-HHHHHHHHHHHTSS------------CB--S-------------------CCHHHHHHHHH
T ss_pred C--cCCCCCcCHHHHHHH-HHHHHHHHHHHHhc------------cc--h-------------------hHHHHHHHHHH
Confidence 4 378999999999886 55688888864321 00 0 12567888999
Q ss_pred HH-hcCChhHHHHHHHHHHHHHHH
Q 000999 755 EM-EGYRLYTVVPYLLKFLDNLTN 777 (1193)
Q Consensus 755 ~~-e~y~~~~a~~~l~~fi~~lsn 777 (1193)
+| ++|+|++|+..|++|++.+.+
T Consensus 367 a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 367 YLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHh
Confidence 99 799999999999999976543
No 19
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1e-37 Score=369.55 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=99.2
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceec---------cc-chhhHHHHHHHHHHcCCCCcchhh
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF---------GW-DCHGLPVENEIDKTLGIKRRDDVF 110 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~---------G~-D~hGlpie~~v~k~lg~~~~~~~~ 110 (1193)
+..+|..+|+++|.+||||++++++.|+++||+||+||+|.+++ || ||||.||+..+.+ .|++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~-~g~~------ 114 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTARE-KGLT------ 114 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC--------------------CC------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHH-cCCC------
Confidence 45688888999999999999999999999999999999999995 55 9999999999876 4764
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCC
Q 000999 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGC 186 (1193)
Q Consensus 111 ~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~ 186 (1193)
+++++++|.+.+++++++||++.|| +.|.++.|+..++++|.+|+++|++|++...|+||+++
T Consensus 115 ----------~~e~a~~~~~~f~~d~~~Lgi~~d~---~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 115 ----------VYEISEFFTEAFFNDCRKLNIVYPD---KVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHTTCCCCS---EEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCCCC---cccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 4569999999999999999987776 34568899999999999999999999999999999886
No 20
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=7.7e-35 Score=347.88 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=124.1
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEE-eeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCC
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN-GLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSP 675 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~ 675 (1193)
|.|+++.|+|++|+|.....+.+.+++|. ||.++++| |||+. +|+|||||+||+|+|.+++++||+|++||||++++
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~ 297 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSC
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEEE-CCeEccccCCCccChhHHhhhCCHHHHHHHHHcCC
Confidence 67999999999999998888888888887 66666555 99986 89999999999999999999999999999999864
Q ss_pred ccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Q 000999 676 VVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQE 755 (1193)
Q Consensus 676 ~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~ 755 (1193)
..+|++|+++.+.+. ++.+.+++|+++++ . + .. . . | .++.+.+.+.++
T Consensus 298 --~~~~~~fs~~~l~~~-~~~l~rl~n~~~~~----~------~-~~----------~--~-d-----~l~~~~~~~~~a 345 (461)
T 1li5_A 298 --YRSQLNYSEENLKQA-RAALERLYTALRGT----D------K-TV----------A--P-A-----GGEAFEARFIEA 345 (461)
T ss_dssp --TTSCEEECHHHHHHH-HHHHHHHHHHHTTC----C------T-TS----------C--C-C-----SCHHHHHHHHHH
T ss_pred --cCCCCCCCHHHHHHH-HHHHHHHHHHHHHh----h------c-CC----------C--H-H-----HHHHHHHHHHHH
Confidence 478999999999875 66678888866432 0 0 00 0 1 2 356788889999
Q ss_pred H-hcCChhHHHHHHHHHHHHHHHHHHH
Q 000999 756 M-EGYRLYTVVPYLLKFLDNLTNIYVR 781 (1193)
Q Consensus 756 ~-e~y~~~~a~~~l~~fi~~lsnwYi~ 781 (1193)
| ++|+++.|+..|++|+.. .|+|++
T Consensus 346 m~dd~n~~~Al~~l~~l~~~-~N~~~~ 371 (461)
T 1li5_A 346 MDDDFNTPEAYSVLFDMARE-VNRLKA 371 (461)
T ss_dssp HHBTSCHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH-HHHHHh
Confidence 9 899999999999999974 688885
No 21
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=100.00 E-value=9.6e-36 Score=325.57 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=162.9
Q ss_pred cCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEeh
Q 000999 183 STGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAE 262 (1193)
Q Consensus 183 cp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~ 262 (1193)
....+|+|||+|..|+||++.|+++ ..++.+. + .+|+||||||||||||+||||||+++|++++.. +++.||+|+
T Consensus 47 ~~~~~~~l~~f~~~~~~k~~~~~~~--~~~l~g~-~-v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~-~ge~~IvAe 121 (311)
T 3pz6_A 47 AEKLNIKLPRFYSNPKNKAIFDQLW--ENQVDNA-K-VYLLAATLRPETMVGQTNCWVLPTGRYGAYYIN-KDEVIIVSE 121 (311)
T ss_dssp CCTTSCCCCCCCCCHHHHHHHHHHH--TTTCCSC-E-EEEEEEESCGGGGGGCCEEEECTTCEEEEEEEE-TTEEEEEEH
T ss_pred HHHhCCCccccccCCCcccccchhe--eeecCCC-C-EEEEEEECCchhhhhheEEEECCCCcEEEEEEC-CCCEEEEeH
Confidence 3467999999999999999999988 4455442 3 899999999999999999999999999999874 578999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCccccccc
Q 000999 263 SRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEF 342 (1193)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~ 342 (1193)
++++.+..... .... ..+.|+++ .+++|++|+|++|.+||.
T Consensus 122 ~l~e~l~~q~~---------------~~~~------------------~~~~~~vl-~~~kG~eL~G~~~~hPl~----- 162 (311)
T 3pz6_A 122 HAAVNMAHQGL---------------NNNK------------------PFGELDFI-SEISGSDLLLATVRAPLS----- 162 (311)
T ss_dssp HHHHHHHTTTC---------------SSSC------------------CTTCCCEE-EEEEHHHHTTCEEECTTC-----
T ss_pred HHHHHHHHhcc---------------cccc------------------cCCCcEEE-EEEEhHHhcCCEEECCCC-----
Confidence 99988632100 0000 00238899 999999999999975542
Q ss_pred CCc-eEEEEecCccccCCCCCceeecCCCChhhHHHHHH-----------cCCCcc----CCCcceeec--C--------
Q 000999 343 SDV-AFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIE-----------NQIINK----GENLIVAVD--D-------- 396 (1193)
Q Consensus 343 ~~~-~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~-----------~~l~~~----~~~~~~~vd--~-------- 396 (1193)
++ .+||++++||++++|||+||+|||||++||++|++ +||..+ ..+++.+|+ .
T Consensus 163 -~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~ 241 (311)
T 3pz6_A 163 -PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVR 241 (311)
T ss_dssp -SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHH
T ss_pred -CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHH
Confidence 43 89999999999999999999999999999998877 675110 012222222 0
Q ss_pred -----------------------------CCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccc
Q 000999 397 -----------------------------DGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLT 436 (1193)
Q Consensus 397 -----------------------------~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~ 436 (1193)
+|.|. .|+|+|+.|.+|++.|+++|.++|..+...+.+
T Consensus 242 ~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyEpe 308 (311)
T 3pz6_A 242 LCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQCIVYSEPE 308 (311)
T ss_dssp HHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBHHHHHHHHHHHHHHTTCEEEEECC-
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEHHHHHHHHHHHHHHCCCceEEcccc
Confidence 35555 589999999999999999999999988776644
No 22
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=8.9e-34 Score=286.59 Aligned_cols=141 Identities=21% Similarity=0.324 Sum_probs=124.8
Q ss_pred cCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCC
Q 000999 202 VPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGP 281 (1193)
Q Consensus 202 ~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 281 (1193)
+++++++|+|++ +. + .+|+||||||||||||+||||||+++
T Consensus 2 ~~~~~~~v~F~~-~~-~-~~l~i~TTrP~Tl~g~~aiav~P~~~------------------------------------ 42 (147)
T 1wka_A 2 TPGKLYTLRYEV-EG-G-GFIEIATVRPETVFADQAIAVHPEDE------------------------------------ 42 (147)
T ss_dssp --CEEEEEEEEB-TT-S-CEEEEEESCGGGGGGCCEEEECTTCT------------------------------------
T ss_pred ccceEEEEEEEC-CC-C-cEEEEEECCceecccceEEEECCCCc------------------------------------
Confidence 468999999999 43 3 79999999999999999999999853
Q ss_pred CCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCC
Q 000999 282 GGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGT 361 (1193)
Q Consensus 282 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GT 361 (1193)
+ | ++|+|++|.+++ .++.+||+.++||++++||
T Consensus 43 -----------~---------------------~---------~~l~g~~~~~P~------~~~~ipI~~~~~V~~~~GT 75 (147)
T 1wka_A 43 -----------R---------------------Y---------RHLLGKRARIPL------TEVWIPILADPAVEKDFGT 75 (147)
T ss_dssp -----------T---------------------T---------GGGTTCEEECTT------SSCEEEEEECTTCCTTSTT
T ss_pred -----------h---------------------H---------HHhcCCEEECCC------CCCeeEEEEeCccccCCCC
Confidence 0 2 267888886444 3689999999999999999
Q ss_pred CceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCC----CCCcchhhhhHHHHHHHHHCCCeeeeccc
Q 000999 362 GIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD----FSGRYVKDADKDIIEALKAKGRLVKTGSL 435 (1193)
Q Consensus 362 GiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~----~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~ 435 (1193)
|+||+|||||++||++|++||| +++++||++|+| ++++ |+|++++|||+.|++.|+++|++++.+++
T Consensus 76 G~V~~~Pah~~~D~~~~~~~~L-----~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 76 GALKVTPAHDPLDYEIGERHGL-----KPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp SEEEECTTTCHHHHHHHHHHTC-----CCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CcEEEccCCCHHHHHHHHHcCC-----CcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999999999999999 999999999999 6666 99999999999999999999999987765
No 23
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.98 E-value=7.5e-34 Score=305.08 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=143.2
Q ss_pred CeEEEEeeecCCCC-------------------cceEEEeecCCCccCCCceEEEccCccEEEEEeccC----CeEEEEe
Q 000999 205 PEIMVSFPIVGDPE-------------------KAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYT----GKIYVVA 261 (1193)
Q Consensus 205 ~~~~v~f~l~~~~~-------------------~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~----~~~~i~a 261 (1193)
....|+|++.+... ..+|+||||||||||||+||||||+++|+.+....+ .+.|+++
T Consensus 4 ~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~ 83 (219)
T 3o0a_A 4 EGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDV 83 (219)
T ss_dssp CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHH
T ss_pred eEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHH
Confidence 35678999876431 158999999999999999999999999998764311 0123778
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccc
Q 000999 262 ESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKE 341 (1193)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~ 341 (1193)
+++++.+.+.. .. +..++ .+++|. |.|++|.+||
T Consensus 84 ~~~i~~~~~~~------------------~~---------------------~~~~~-~~~~G~-l~G~~~~~Pl----- 117 (219)
T 3o0a_A 84 ENFVEKMKKMS------------------TR---------------------ERTME-EDKEGV-FLGVYATNPA----- 117 (219)
T ss_dssp HHHHHHHHTCC------------------HH---------------------HHHSC-SSCCEE-EEEEEEECTT-----
T ss_pred HHHHHHHHhhc------------------cc---------------------cceeE-EEeeeE-EcCCEEECCC-----
Confidence 88888775510 00 02233 567898 9999996444
Q ss_pred cCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecC-------CCccccC-----CCCCCC
Q 000999 342 FSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDD-------DGCFTGK-----ITDFSG 409 (1193)
Q Consensus 342 ~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~-------~G~~~~~-----~~~~~G 409 (1193)
.++.+||+.++||++++|||+||+|||||++||++|++||| +++++||. +|+|+++ .++|.|
T Consensus 118 -~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L-----pi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~G 191 (219)
T 3o0a_A 118 -NGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL-----PIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDG 191 (219)
T ss_dssp -TCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC-----CCCCCEECSSCCCTTTCCCCSCCEECSCGGGTT
T ss_pred -CCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC-----CceeeeCCccccccccccccccceEecCCCCCC
Confidence 37899999999999999999999999999999999999999 89999987 6777765 488999
Q ss_pred cchhhhhHHHHHHHHHCCCeeeeccc
Q 000999 410 RYVKDADKDIIEALKAKGRLVKTGSL 435 (1193)
Q Consensus 410 ~~v~ea~~~Ii~~L~~~g~l~~~~~~ 435 (1193)
|+++||++.|++.|+++|++.+..+|
T Consensus 192 l~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 192 LDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp CBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred CCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 99999999999999999999886554
No 24
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.97 E-value=1.6e-32 Score=302.71 Aligned_cols=180 Identities=21% Similarity=0.297 Sum_probs=138.6
Q ss_pred ceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCc
Q 000999 220 AAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKK 299 (1193)
Q Consensus 220 ~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 299 (1193)
.+|+||||||||||||+||||||+++|+.++.. ++.++++++++..+.... . ..+
T Consensus 33 ~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~--~~~~~i~~~~~~~~~~~~-------------~----~~~------ 87 (261)
T 2wfg_A 33 VYLVAATLRPETMYGQTCCFVSPKIDYGVFDAG--NGDYFITTERAFKNMSFQ-------------N----LTP------ 87 (261)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCEEEEEECS--TTEEEEECHHHHHHHTTT-------------T----CSS------
T ss_pred CEEEEEECCchHHhhhheEEECCCCceEEEEec--CceEEEhHHHHHHHHHHH-------------h----hhh------
Confidence 789999999999999999999999999998852 345777777766654310 0 000
Q ss_pred ccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHH
Q 000999 300 AQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCI 379 (1193)
Q Consensus 300 ~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~ 379 (1193)
..++++++ .+++|.+|.|+.|.+|+. .++.+||++++||++++|||+||+|||||++||++|+
T Consensus 88 -----------~~~~~~~~-~~~~G~~L~G~~~~~Pl~-----~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~ 150 (261)
T 2wfg_A 88 -----------KRGYYKPL-FTINGKTLIGSRIDAPYA-----VNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTR 150 (261)
T ss_dssp -----------STTCCCCS-EEEEHHHHTTCEEECTTC-----SSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHH
T ss_pred -----------cccccEEE-EEEecccccCCEEECCCC-----CCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHH
Confidence 00126677 899999999999975552 1467999999999999999999999999999999999
Q ss_pred H-------cCCCcc--CCCcceeecC--C---------------------------------CccccC--CCCCCCcchh
Q 000999 380 E-------NQIINK--GENLIVAVDD--D---------------------------------GCFTGK--ITDFSGRYVK 413 (1193)
Q Consensus 380 ~-------~~l~~~--~~~~~~~vd~--~---------------------------------G~~~~~--~~~~~G~~v~ 413 (1193)
+ ||+..+ +.+++++||. + |+|+.. +++|+|++++
T Consensus 151 kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~ 230 (261)
T 2wfg_A 151 DLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVE 230 (261)
T ss_dssp HHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHH
T ss_pred HhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHH
Confidence 9 993110 0188888876 3 334433 7899999999
Q ss_pred hhhHHHHHHHHHCCCeeeeccccccCCc
Q 000999 414 DADKDIIEALKAKGRLVKTGSLTHSYPF 441 (1193)
Q Consensus 414 ea~~~Ii~~L~~~g~l~~~~~~~h~yp~ 441 (1193)
||++.|++.|+++|++++..+++|+--|
T Consensus 231 eA~~~Ii~~L~~~G~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 231 DAKPKVKQDLIDEGLAFVYNEPELEHHH 258 (261)
T ss_dssp HHHHHHHHHHHHTTSEEEECC-------
T ss_pred HHHHHHHHHHHHCCCeeeeeeeeecccc
Confidence 9999999999999999999999997543
No 25
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=8.3e-33 Score=293.48 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=135.4
Q ss_pred CCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCC
Q 000999 203 PDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPG 282 (1193)
Q Consensus 203 ~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~ 282 (1193)
-+++++|+|++.+. + .+|+||||||||||||+||||||+++|+.+... + +.++..+..+.
T Consensus 9 ~~~g~~v~F~~~~~-~-~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~--~------~~~~~~~~~~~---------- 68 (196)
T 2ajg_A 9 MGEGVEITFNVNDY-D-NTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE--N------NPELAAFIDEC---------- 68 (196)
T ss_dssp --CEEEEEEEBTTC-S-SEEEEEESCGGGGGGCCEEEECTTSHHHHHHHT--T------CHHHHHHHHHH----------
T ss_pred cCceEEEEEEeCCC-C-cEEEEEECChhhhcCccEEEECCCCcEEEEEcC--C------HHHHHHHHHHh----------
Confidence 46899999999653 3 799999999999999999999999999876421 1 12222221100
Q ss_pred CCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCCC
Q 000999 283 GDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTG 362 (1193)
Q Consensus 283 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTG 362 (1193)
+.+ ...+++++ .+.+|.+|.|++|.+|| .++.+||+.++||++++|||
T Consensus 69 --------~~~-----------------~~~~~~~~-~~~k~g~l~G~~~~~P~------~~~~ipV~~ad~V~~~~GTG 116 (196)
T 2ajg_A 69 --------RNT-----------------KVAEAEMA-TMEKKGVDTGFKAVHPL------TGEEIPVWAANFVLMEYGTG 116 (196)
T ss_dssp --------HHC-----------------CCCGGGGG-GSCCCEEEEEEEEECTT------TCCEEEEEEETTCCSSSSCS
T ss_pred --------hcc-----------------cccceEEE-eeeeCCEEcCCEEECCC------CCCeeEEEEeCCCccCCCCc
Confidence 000 00014554 55566699999997554 36899999999999999999
Q ss_pred ceeecCCCChhhHHHHHHcCCCccCCCcceeec---------CCCccccCC-----CCCCCcchhhhhHHHHHHHHHCCC
Q 000999 363 IVHCAPAFGEDDYRVCIENQIINKGENLIVAVD---------DDGCFTGKI-----TDFSGRYVKDADKDIIEALKAKGR 428 (1193)
Q Consensus 363 iVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd---------~~G~~~~~~-----~~~~G~~v~ea~~~Ii~~L~~~g~ 428 (1193)
+||+|||||++||++|++||| +++++|| ++|+|+++. ++|+|++++||++.|++.|+++|+
T Consensus 117 ~V~~aPah~~~D~~~~~k~~L-----~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~ 191 (196)
T 2ajg_A 117 AVMAVPGHDQRDYEFASKYGL-----NIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGV 191 (196)
T ss_dssp EEEECTTTCHHHHHHHHHHTC-----CCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTS
T ss_pred eEEECCCCCHHHHHHHHHcCC-----CceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999 8999996 588998764 679999999999999999999999
Q ss_pred eee
Q 000999 429 LVK 431 (1193)
Q Consensus 429 l~~ 431 (1193)
+.+
T Consensus 192 ~~~ 194 (196)
T 2ajg_A 192 GER 194 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 865
No 26
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=293.83 Aligned_cols=181 Identities=17% Similarity=0.275 Sum_probs=140.9
Q ss_pred EEEEeeecCC---------CCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhcc-CCCCCCCC
Q 000999 207 IMVSFPIVGD---------PEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSAL-PSEKPKSS 276 (1193)
Q Consensus 207 ~~v~f~l~~~---------~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~-~~~~~~~~ 276 (1193)
..|+|++.+. ..+.+|+||||||||||||+||||||+++|+.++.. +++.||+++.++..+ +....
T Consensus 8 ~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~-~~~~~i~a~~~~~~~~~~~~~--- 83 (252)
T 2wfd_A 8 TLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETV-NGDIFICTQKAARNMSYQGFT--- 83 (252)
T ss_dssp EEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECT-TSCEEEECHHHHHHHHTTTSS---
T ss_pred EEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEec-CCcEEEEhhhhHHHHHHHHhh---
Confidence 4578876431 123799999999999999999999999999998752 467999999987765 22100
Q ss_pred CCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCC-ceEEEEecCcc
Q 000999 277 AANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSD-VAFRVIADNYV 355 (1193)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~-~~~~vi~~~~V 355 (1193)
.+ .++++++ .+++|.+|.|++|.+|+ .+ +.+||+.++||
T Consensus 84 ---------------~~------------------~~~~~~~-~~~~G~~l~G~~~~~Pl------~~~~~ipV~~adyV 123 (252)
T 2wfd_A 84 ---------------KD------------------NGVVPVV-KELMGEEILGASLSAPL------TSYKVIYVLPMLTI 123 (252)
T ss_dssp ---------------SS------------------TTCCCEE-EECCHHHHTTCEEECSS------CSSSCEEEEECSCC
T ss_pred ---------------cc------------------CcccEEE-EEEEcccccCCEEEcCC------CCCceeEEEEeCcc
Confidence 00 0127777 99999999999997554 24 57999999999
Q ss_pred ccCCCCCceeecCCCChhhHHH----------HHHcCCCcc---CCCcceeec----------------------C----
Q 000999 356 TSDSGTGIVHCAPAFGEDDYRV----------CIENQIINK---GENLIVAVD----------------------D---- 396 (1193)
Q Consensus 356 ~~~~GTGiVh~aPahg~~D~~~----------~~~~~l~~~---~~~~~~~vd----------------------~---- 396 (1193)
++++|||+||+|||||++||++ |++|||..+ +.+++.+|+ +
T Consensus 124 ~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l 203 (252)
T 2wfd_A 124 KEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKL 203 (252)
T ss_dssp CSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHH
T ss_pred cCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhh
Confidence 9999999999999999999995 778898310 011333332 1
Q ss_pred -------------CCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeec
Q 000999 397 -------------DGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTG 433 (1193)
Q Consensus 397 -------------~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~ 433 (1193)
+|+|+ .++|+|+++++|++.|+++|+++|++....
T Consensus 204 ~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~~ 251 (252)
T 2wfd_A 204 AEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMIDAGDALIYM 251 (252)
T ss_dssp HHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHHHHHCCCCcccc
Confidence 58887 789999999999999999999999987653
No 27
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.92 E-value=5e-23 Score=244.64 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=137.8
Q ss_pred eEEecccCccchHHHHHHHHHHccCCCCcc-EEEEEeeE-EccCCc--cccccCCCCCChhhhHhhcChhHHHHhHhhCC
Q 000999 600 FIAEGLDQTRGWFYTLMVLSTALFGKPAFR-NLICNGLV-LAEDGK--KMSKKLKNYPSPVEVINDYGADALRLYLINSP 675 (1193)
Q Consensus 600 ~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk-~v~~hG~v-ld~~G~--KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~ 675 (1193)
+++.|.||. +||.++. ..+...|..|.+ .++.|||| ++++|+ |||||+||+|+|.++++++|+|++|||+++..
T Consensus 239 Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp EEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred EEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 467788888 7888755 344445666665 77899999 777886 99999999999999999999999999999875
Q ss_pred ccccccccccHhHHHHHHHhhhhhHHHH---HHHHHHHHHHhhhhcC-CCCCCchhhhhhcCCchhHHHHHHHHHHHHHH
Q 000999 676 VVRAETLRFKKDGVFAVVKDVFLPWYNA---YRFLVQNAKRLEIEGG-APFIPLDLATLQKSSNVLDQWINSATQSLVHF 751 (1193)
Q Consensus 676 ~~~~~d~~Fs~~~v~~~~~~~l~kl~N~---~~f~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~D~wils~l~~li~~ 751 (1193)
+ ..|++|+++.+.+..+ .|. ..|...++..+.+..+ .++.+.... ...+...|+|++..+..+.+.
T Consensus 317 ~--~~d~~Fd~~~~~~~~n------~npv~YlqYa~aRi~silrk~~~~~~~~~~~~--~~~L~~~e~~Ll~~L~~~~~~ 386 (464)
T 3fnr_A 317 C--DTHLEFDISDLQKEDS------SNPVYYINYAHARIHQVFAKAGKKIDDVMKAD--LQSLNQDGVNLLFEALNLKAV 386 (464)
T ss_dssp T--TSCEEEEGGGGGCCST------TSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCC--CTTCCHHHHHHHHHHHTHHHH
T ss_pred C--CCCCccCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHhhccCCCccccC--hhhCChHHHHHHHHHHHHHHH
Confidence 4 6899999998754311 122 1122223333222221 122221100 112344599999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCCh-HHHHHHHHHHHHHHHHHHHhcCCCch
Q 000999 752 VRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE-DDCRIALSTLYNVLLTSCKVMAPFTP 819 (1193)
Q Consensus 752 v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~-~~~~~a~~tL~~vL~~l~~LLaPf~P 819 (1193)
+.+++++|+++.+++.+++++..+++||-+ .++.+++.+ ...+-++.... +|...+.||.-=+|
T Consensus 387 v~~a~~~~ep~~i~~yL~~La~~~n~fY~~---~~vl~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 387 LNDAFEARALQKIPDYLKNLAANFHKFYNE---NKVVGSANENDLLKLFSLVAL-SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHHHHHHHH---CCCTTSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHh---CcCCCCCHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Confidence 999999999999999999999989998854 244443321 12233333333 78888888876666
No 28
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.92 E-value=1.1e-23 Score=259.33 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=118.9
Q ss_pred EEEEEeeEEccCCccccccCCCCCChhhhHhh-------------------------cChhHHHHhHhhCCccccccccc
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-------------------------YGADALRLYLINSPVVRAETLRF 684 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-------------------------yGaDalR~yL~~~~~~~~~d~~F 684 (1193)
.++.||||+. +|+|||||+||+|+|.+++++ +|+|++|||+++..+ ..|++|
T Consensus 381 ~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~--~~~~~F 457 (592)
T 1iq0_A 381 HHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP--KKQIDF 457 (592)
T ss_dssp EEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCT--TSCEEE
T ss_pred EEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCC--CCCCee
Confidence 4678899985 899999999999999999999 999999999998755 689999
Q ss_pred cHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHH
Q 000999 685 KKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTV 764 (1193)
Q Consensus 685 s~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a 764 (1193)
+++.+.+..++. .+-+.+...++..+-++......+. . ....+.++-++..+..+.+.+.+++++++++.+
T Consensus 458 d~d~~~~~~~~~----~~ylqya~aR~~sil~k~~~~~~~~-~----~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~ 528 (592)
T 1iq0_A 458 RYQEALSFEGDT----GPYVQYAHARAHSILRKAGEWGAPD-L----SQATPYERALALDLLDFEEAVLEAAEERTPHVL 528 (592)
T ss_dssp CHHHHHCSSSSS----HHHHHHHHHHHHHHHHHHCCCCCCC-G----GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHhccc----hHHHHHHHHHHHHHHHhhcccCCCc-c----CCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999887542221 2223334444433322222111111 0 112455677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-----cccCCCCh--HHHHHHHHHHHHHHHHHHHhcCCCch
Q 000999 765 VPYLLKFLDNLTNIYVRFNRK-----RLKGRSGE--DDCRIALSTLYNVLLTSCKVMAPFTP 819 (1193)
Q Consensus 765 ~~~l~~fi~~lsnwYi~~~r~-----rl~~~~~~--~~~~~a~~tL~~vL~~l~~LLaPf~P 819 (1193)
+..++++...++.+| +.+++ |+..++.. ..+...+..+..+|...+.||.-=+|
T Consensus 529 ~~yl~~La~~fn~fy-~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 529 AQYLLDLAASWNAYY-NARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHH-HCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHH-HhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999998766655 44433 54443221 22444446677888888888875444
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.91 E-value=5.9e-23 Score=253.63 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=122.9
Q ss_pred EEEEEeeEEccCCccccccCC--CCCChhhhHhh---------------------------cChhHHHHhHhhCCccccc
Q 000999 630 NLICNGLVLAEDGKKMSKKLK--NYPSPVEVIND---------------------------YGADALRLYLINSPVVRAE 680 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~G--N~v~P~~li~~---------------------------yGaDalR~yL~~~~~~~~~ 680 (1193)
.++.||||+. +|+|||||+| |+|+|.+++++ +|.||+||++++..+ ..
T Consensus 411 ~h~~~g~V~~-~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~--~~ 487 (629)
T 2zue_A 411 YHLAYEHVER-PEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSP--DK 487 (629)
T ss_dssp EEEEECCEEB-TTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCT--TS
T ss_pred EEEEeeeEEc-CCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCC--CC
Confidence 4788999995 7899999999 99999999999 999999999998755 68
Q ss_pred cccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcC-CCCCCc----hhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Q 000999 681 TLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGG-APFIPL----DLATLQKSSNVLDQWINSATQSLVHFVRQE 755 (1193)
Q Consensus 681 d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~-~~~~p~----~~~~~~~~~~~~D~wils~l~~li~~v~~~ 755 (1193)
|++|+++.+.+.-.+ .-+-+.|...++..+-++.+ .+..+. ..........+.++-++..+..+.+.+.++
T Consensus 488 ~~~Fd~d~~~~~~~~----t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a 563 (629)
T 2zue_A 488 KIIFRWEDVLNFEGE----SAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQA 563 (629)
T ss_dssp CEECCHHHHSCCSSS----SHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecHHHHHHHhcC----chHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999887643111 22223344444333222111 111000 000000112456777999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCCh--HHHHHHHHHHHHHHHHHHHhcCCCch
Q 000999 756 MEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE--DDCRIALSTLYNVLLTSCKVMAPFTP 819 (1193)
Q Consensus 756 ~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~--~~~~~a~~tL~~vL~~l~~LLaPf~P 819 (1193)
+++++++.++..++++...++.+|=+. |+..++.. ..|..-+.+...+|...+.||.-=+|
T Consensus 564 ~~~~~p~~l~~yl~~La~~fn~fy~~~---~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 564 GKDVKPHLIAWFANELASLFNKFYMDH---PVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHHHHHC---CSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhc---cccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999998888877432 44433221 23444446677888888888875444
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.85 E-value=7.9e-23 Score=248.90 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=95.4
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhh--HHH--H--HHHHHHcCCCCcchhhhcC
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG--LPV--E--NEIDKTLGIKRRDDVFQMG 113 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hG--lpi--e--~~v~k~lg~~~~~~~~~~g 113 (1193)
+.|++ .+.|+|||.|||||+++.++.|+++||.+++||+|.+..|+|.|| -.| . ...++.+|++..+.-..+|
T Consensus 20 ~~yv~-~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~ 98 (523)
T 1irx_A 20 EKYVV-ESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWG 98 (523)
T ss_dssp SEEEE-EEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTS
T ss_pred CeEEE-CCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchh
Confidence 34554 556999999999999999999999999999999999999999999 222 1 1122234654421111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHH-HHHHHHHHHHHcC-ceeee
Q 000999 114 IDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFME-SVWWVFAQLYEKG-LVYKG 176 (1193)
Q Consensus 114 ~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~-~v~~~f~~L~~kG-liy~~ 176 (1193)
.|++++++|.+.+++.++.||+ +||.. ++.+. |.+ .+..++.+|.++| .||+.
T Consensus 99 ------~~~~~~~~~~~~~~~~l~~Lgi--~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~ 153 (523)
T 1irx_A 99 ------CHESYAEHFMRKFEEEVEKLGI--EVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEI 153 (523)
T ss_dssp ------SSSSHHHHHHHHHHHHHHTTTC--CCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHcCC--CceEE-echhh-ccchHHHHHHHHHHHchHHHHHH
Confidence 3788999999999999999995 66654 55433 777 8899999999999 88753
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.65 E-value=1.6e-14 Score=177.20 Aligned_cols=134 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHH--HHcCCCC------c----
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEID--KTLGIKR------R---- 106 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~--k~lg~~~------~---- 106 (1193)
.++..++-.=|||||++|+||+++.++.|+++|+.+..||+|.+......+|.++-..+. +++|-.. -
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 345788888999999999999999999999999999999999999998888888654331 1122100 0
Q ss_pred --------------------chhh----h------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhH
Q 000999 107 --------------------DDVF----Q------MGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKF 156 (1193)
Q Consensus 107 --------------------~~~~----~------~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y 156 (1193)
+.+. + -|.++..+..+.+++.+.+.+++++.+|| |.+|....+. .|
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~--V~fD~~~~ES--~~ 297 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLN--IKYDVYSGES--QV 297 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCSEEEEGG--GC
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CcceeecCcc--hh
Confidence 0010 0 13333333456678888899999999999 5665544443 24
Q ss_pred H-HHHHHHHHHHHHcCceeee
Q 000999 157 M-ESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 157 ~-~~v~~~f~~L~~kGliy~~ 176 (1193)
. ..+..++..|.++|++|+.
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~ 318 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHED 318 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhHHHHHHHHHHhCCCEEEE
Confidence 4 6789999999999999975
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.76 E-value=2e-05 Score=88.49 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=65.6
Q ss_pred cCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHH
Q 000999 46 DGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIV 125 (1193)
Q Consensus 46 ~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~ 125 (1193)
==+|.|||.||+||+++.++...++|- ..|.-+++.-=+|.- . ..
T Consensus 9 RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~g~~ilRieDtD~~-----------------R----------------~~ 53 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALGSYLQARA--RQGRWLVRIEDIDPP-----------------R----------------EV 53 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHHHHHHHHH--TTCEEEEEECCSCGG-----------------G----------------SC
T ss_pred EECcCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEecCCch-----------------h----------------hH
Confidence 337999999999999999866665553 245444444433311 1 01
Q ss_pred HHHHHHHHHHHHHhCCcccccC-ccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 126 TRYVEEWEQIITRTGRWIDFRN-DYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 126 ~~~~~~~~~~~~~lG~~iD~~~-~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
..|.+.+.++++.|| ++||. .|+.. ++.+....+..+|.++|++|.-
T Consensus 54 ~~~~~~I~~dL~~LG--l~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 54 PGAAETILRQLEHYG--LHWDGDVLWQS--QRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp TTHHHHHHHHHHHTT--CCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHcC--CCCCCCCeeee--CCHHHHHHHHHHHHHcCCcccC
Confidence 237788999999999 89997 44443 4667788899999999999964
No 33
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.68 E-value=8.2e-05 Score=88.90 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=73.0
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHH
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEAC 121 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c 121 (1193)
+++.--+|+|||.||+||+++-++.|.++|. ..|+-+++.--+| ...
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD-----------------~~r-------------- 59 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD-----------------LER-------------- 59 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS-----------------CCS--------------
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC-----------------ccc--------------
Confidence 5566678999999999999999999999998 6898888865443 111
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccC---------ccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 122 RSIVTRYVEEWEQIITRTGRWIDFRN---------DYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lG~~iD~~~---------~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
.+..+.+.+.+.++.|| ++||. +|+. .++.+....+..+|.++|+.|..
T Consensus 60 --~~~~~~~~I~~~l~wlG--l~~de~p~~gg~~g~y~Q--S~r~~~y~~~a~~L~~~G~aY~c 117 (481)
T 2o5r_A 60 --SEREYEEKLMESLRWLG--LLWDEGPDVGGDHGPYRQ--SERVEIYREHAERLVKEGKAYYV 117 (481)
T ss_dssp --GGGHHHHHHHHHHHHHT--CCCSBBTTTBCTTCCCBG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred --cHHHHHHHHHHHHHHcC--CCCCCCcccCCCCCceee--eccHHHHHHHHHHHHHCCCeeEe
Confidence 11236667788999999 78985 2443 24566677788999999999854
No 34
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.51 E-value=0.00015 Score=88.63 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=71.5
Q ss_pred EcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHH
Q 000999 45 YDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSI 124 (1193)
Q Consensus 45 ~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~ 124 (1193)
+-=+|.|||.||+||+++-++.+.++|. ..|.-+++.-=+| +.. .
T Consensus 132 ~RFaPsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD-----------------~~r----------------~ 176 (592)
T 3al0_C 132 VRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTD-----------------TER----------------S 176 (592)
T ss_dssp EEECCCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-----------------SSS----------------C
T ss_pred EEECCCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcC-----------------hhh----------------c
Confidence 3445999999999999999999999986 5677777774443 111 1
Q ss_pred HHHHHHHHHHHHHHhCCcccccCc---------cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 125 VTRYVEEWEQIITRTGRWIDFRND---------YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 125 ~~~~~~~~~~~~~~lG~~iD~~~~---------y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
+..+.+.+.+.++.|| ++||.. |+.. ++......+..+|.++|++|..
T Consensus 177 ~~~~~~~I~~dL~wlG--l~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 177 SREYEQQILESLRWCG--LDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp CHHHHHHHHHHHHHTT--CCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEE
T ss_pred cHHHHHHHHHHHHHcC--CCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEe
Confidence 2346788999999999 899983 5544 3446778889999999999986
No 35
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.50 E-value=0.00012 Score=83.40 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=52.8
Q ss_pred cCCceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHh
Q 000999 595 NFPGQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~ 672 (1193)
.+.+|+...|.||.. +..+..-+ .+....| .++.+.++.+.+|+|||||.||+|++.+ .+|++|..+.
T Consensus 168 ~~~~~~v~~G~DQ~~---~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~ 237 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRK---IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIR 237 (323)
T ss_dssp HTTCSEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHH
T ss_pred hcCCCEEEechhhHH---HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHH
Confidence 368999999999965 33332222 2222333 3778899999999999999999999987 4999999998
Q ss_pred hC
Q 000999 673 NS 674 (1193)
Q Consensus 673 ~~ 674 (1193)
++
T Consensus 238 ~a 239 (323)
T 2cyb_A 238 KA 239 (323)
T ss_dssp TS
T ss_pred hc
Confidence 75
No 36
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.47 E-value=0.0002 Score=85.87 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=70.4
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||++.++...++|- ..|.-+++.-=+|.. +
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~--~~G~~iLRieDtD~~---------R----------------------- 142 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARK--YDGRLILRIEDTDPR---------R----------------------- 142 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG---------G-----------------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc---------c-----------------------
Confidence 345568999999999999999997777762 345555555444421 0
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
...+|.+.+.++++.|| ++|+..|+.. +|.+.-.....+|.++|+.|.
T Consensus 143 -~~~e~~~~I~edL~wLG--l~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 143 -VDPEAYDMIPADLEWLG--VEWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp -CCTTHHHHHHHHHHHHT--CCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred -ccHHHHHHHHHHHHHcC--CCCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 01247889999999999 8998665544 688888889999999999997
No 37
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.45 E-value=0.00019 Score=86.12 Aligned_cols=94 Identities=20% Similarity=0.207 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||||||++.++...++| ...|.-+++.-=+|.. +
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~~----------------R---------------- 72 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNPV----------------K---------------- 72 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG----------------G----------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCch----------------h----------------
Confidence 34455899999999999999999888887 3567667766666531 0
Q ss_pred HHHHHHHHHHHHHHHHhCCccccc-CccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFR-NDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~-~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
.+.+|.+.+.+.|+.|| ++|+ ..|+.. +|.........+|.++|+.|.
T Consensus 73 -~~~e~~~~I~edL~wLG--l~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 73 -EDIEYVESIKNDVEWLG--FHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp -CCHHHHHHHHHHHHHTT--CCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred -cCHHHHHHHHHHHHHcC--CCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 12357889999999999 8994 444443 455544555579999999997
No 38
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.44 E-value=0.00015 Score=86.06 Aligned_cols=93 Identities=29% Similarity=0.317 Sum_probs=72.3
Q ss_pred EcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHH
Q 000999 45 YDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSI 124 (1193)
Q Consensus 45 ~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~ 124 (1193)
+==+|.|||.+|+||+++.+....++|. ..|.-+++.=-+|.. + .
T Consensus 28 ~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-----R----------------------------~ 72 (490)
T 4g6z_A 28 TRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE-----R----------------------------S 72 (490)
T ss_dssp EEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG-----G----------------------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc-----c----------------------------c
Confidence 3447999999999999999999998885 478778777666531 0 1
Q ss_pred HHHHHHHHHHHHHHhCCcccccCc-cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 125 VTRYVEEWEQIITRTGRWIDFRND-YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 125 ~~~~~~~~~~~~~~lG~~iD~~~~-y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
+..|.+.+.++++.|| ++||.. |+.. ++.+.-..+..+|.++|++|.-
T Consensus 73 ~~~~~~~i~~dl~wlG--l~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 73 SQEAVDAILEGMAWLG--LDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHcC--CCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEeC
Confidence 1347888999999999 899973 4443 5667778888999999999976
No 39
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00062 Score=85.18 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=70.4
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||||||++.++...++|- ..|.-+++.-=+|.. +
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG~fiLRIEDTD~~----------------R---------------- 112 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGGQFNLRMDDTNPE----------------L---------------- 112 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCTT----------------T----------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc----------------c----------------
Confidence 334448999999999999999998777773 456666655544421 0
Q ss_pred HHHHHHHHHHHHHHHHhCCccccc-CccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFR-NDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~-~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
...+|.+.+.++|+.|| ++|+ ..|+.. +|...-.....+|.++|+.|.
T Consensus 113 -~~~e~~~~IledL~wLG--l~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 113 -ARQEYVDSIADDLKWLG--LDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp -CCHHHHHHHHHHHHHHT--CCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred -ccHHHHHHHHHHHHHcC--CCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 12358889999999999 8995 444443 677788888899999999997
No 40
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.13 E-value=0.00072 Score=80.88 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
+|.|||.||+||+++.+..-.++|- ..|.-+++.==+|. .+. ...
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~----------------~R~-----------------~~~ 51 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR----------------ERS-----------------RPE 51 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS----------------SSC-----------------CHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc----------------ccc-----------------chH
Confidence 7999999999999999997666663 45666666655552 111 134
Q ss_pred HHHHHHHHHHHhCCcccccC-ccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 128 YVEEWEQIITRTGRWIDFRN-DYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~~-~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
|.+.+.+.++.|| ++||. +|+.. ++.+.-..+..+|.++|+.|.
T Consensus 52 ~~~~i~~dL~wLG--l~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 52 YTENILEGLQWLG--LTWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHTT--CCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcC--CCCCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 7788999999999 89997 45443 455666777889999999997
No 41
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=96.92 E-value=0.0017 Score=77.16 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=67.9
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
+|.|||.||+||+++-++.-.++| ...|.-+++.==+|.. . ....
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~-----------------R----------------~~~~ 51 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRIEDTDRA-----------------R----------------YVPG 51 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCTT-----------------S----------------CCTT
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc-----------------c----------------cChH
Confidence 799999999999999999988887 3466666665544332 0 0123
Q ss_pred HHHHHHHHHHHhCCcccccCc---------cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 128 YVEEWEQIITRTGRWIDFRND---------YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~~~---------y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
|.+.+.+.++.|| ++||.. |+.. ++.+.-.....+|.++|++|.-
T Consensus 52 ~~~~I~~dl~wlG--l~wd~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 52 AEERILAALKWLG--LSYDEGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp HHHHHHHHHHHTT--CCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCCCCCCCCCCCCCeecc--CCHHHHHHHHHHHHHcCCeEEc
Confidence 6788899999999 899975 4443 4566667788899999999975
No 42
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=96.75 E-value=0.0029 Score=75.48 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=70.4
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHH
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRS 123 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~ 123 (1193)
.+==+|.|||.||+||+++-++.-.++|- ..|.-+++.==+|.. .
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-----------------R---------------- 71 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE-----------------R---------------- 71 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT-----------------T----------------
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCcc-----------------c----------------
Confidence 34557999999999999999988888774 466666665444332 1
Q ss_pred HHHHHHHHHHHHHHHhCCcccccCc---------cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 124 IVTRYVEEWEQIITRTGRWIDFRND---------YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 124 ~~~~~~~~~~~~~~~lG~~iD~~~~---------y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....+.+.+.++|+.|| ++||.. |+.. ++.+....+..+|.++|++|.-
T Consensus 72 ~~~~~~~~I~~dL~wlG--l~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 72 SSREYEQQILESLRWCG--LDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp CCHHHHHHHHHHHHHTT--CCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHcC--CCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEec
Confidence 11246778999999999 899983 4443 4556778889999999999986
No 43
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.70 E-value=0.0026 Score=76.00 Aligned_cols=92 Identities=22% Similarity=0.193 Sum_probs=69.4
Q ss_pred cCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHH
Q 000999 46 DGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIV 125 (1193)
Q Consensus 46 ~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~ 125 (1193)
==+|-|||.||+||+++-++.-.++|- ..|.-+++.==+|. .. ..
T Consensus 10 RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD~-----------------~R----------------~~ 54 (498)
T 2ja2_A 10 RFCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTDA-----------------QR----------------DS 54 (498)
T ss_dssp EECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCT-----------------TT----------------CC
T ss_pred EECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCC-----------------cc----------------cC
Confidence 347999999999999999999999884 46776666543321 11 11
Q ss_pred HHHHHHHHHHHHHhCCcccccC---------ccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 126 TRYVEEWEQIITRTGRWIDFRN---------DYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 126 ~~~~~~~~~~~~~lG~~iD~~~---------~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
..+.+.+.+.++.|| +|||. +|+.. ++.+.-..+..+|.++|++|.-
T Consensus 55 ~~~~~~I~~~L~wlG--l~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 55 EESYLALLDALRWLG--LDWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHHHHHHHT--CCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHcC--CCcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEEe
Confidence 247788999999999 89997 45543 4566667788999999999976
No 44
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.50 E-value=0.00054 Score=82.18 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=47.4
Q ss_pred ccEEEEEeeEEccCCccccccCCC---------------CCChhhhHhh-cChhHHHHhHhhCCccccccccccHhHHHH
Q 000999 628 FRNLICNGLVLAEDGKKMSKKLKN---------------YPSPVEVIND-YGADALRLYLINSPVVRAETLRFKKDGVFA 691 (1193)
Q Consensus 628 fk~v~~hG~vld~~G~KMSKS~GN---------------~v~P~~li~~-yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~ 691 (1193)
+-+..-+|++. .+|+|||||+|| .++..++.++ |.++++|.|+++.+. ...+..|+++.+..
T Consensus 314 ~P~y~H~~~L~-~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~-s~~~~~~s~~~L~~ 391 (553)
T 3aii_A 314 PPEFIHYGRLK-MDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGV-KIADSTMSWKKIYG 391 (553)
T ss_dssp CCEEECCCCBC--------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTT-CSSCBCCCHHHHHH
T ss_pred CCeEEEeeEEe-cCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCC-CCccccccHHHHHH
Confidence 33566888875 589999999998 6677888876 999999999997665 34578999998887
Q ss_pred HHHhhh
Q 000999 692 VVKDVF 697 (1193)
Q Consensus 692 ~~~~~l 697 (1193)
..++.+
T Consensus 392 ~~r~~l 397 (553)
T 3aii_A 392 LNRSIL 397 (553)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655544
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.31 E-value=0.0071 Score=72.93 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
||-|||.||+|||++-++.-.++|- ..|.-++|.==+|. .. ....
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD~-----------------~R----------------~~~~ 74 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTDQ-----------------SR----------------YSPE 74 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT-----------------TS----------------CCHH
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-----------------Cc----------------CCHH
Confidence 8999999999999999999888864 46766666543331 11 1124
Q ss_pred HHHHHHHHHHHhCCcccccCc------cccC-ChhHHHHHHHHHHHHHHcCceeee
Q 000999 128 YVEEWEQIITRTGRWIDFRND------YKTM-DLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~~~------y~T~-d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
|.+.+.++|+-|| ++||.. |..+ -.++.+.-..+..+|.++|++|.-
T Consensus 75 ~~~~I~~~L~wlG--l~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 75 AENDLYSSLKWLG--ISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHHHHHHHT--CCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 7778899999999 899852 1111 123344455678899999999975
No 46
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.70 E-value=0.0063 Score=69.01 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=50.8
Q ss_pred CCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
+++++.+.|.||.... -.-.-+.-.+....| -.+.+.++...+|+|||||.||+|+..+ ++..++.++=++.+
T Consensus 190 ~~~~v~~gG~DQ~~~i-~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNI-TSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHHHH-HHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHHHH-HHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 4899999999996432 111112222333334 3556778887899999999999999887 67778888877765
No 47
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.69 E-value=0.028 Score=67.19 Aligned_cols=74 Identities=26% Similarity=0.183 Sum_probs=49.6
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhCC
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINSP 675 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~~ 675 (1193)
.+.++-|.|++-.-.. .+.+.-++ |..++ ....++++++.+|+|||||.||+ ...++.++ |.++++|.||+..+
T Consensus 204 IthviRG~D~~~~t~~-q~~l~~al-g~~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 204 ITDVIRGEDHIGNTPK-QILLYEAL-GATPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp CSEEEEEGGGTTHHHH-HHHHHHHT-TCCCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred CCeEEEchhhhhCHHH-HHHHHHHc-CCCCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 3445556666543211 11122233 33333 66677899999999999999998 67777764 89999999998754
No 48
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.58 E-value=0.0079 Score=70.54 Aligned_cols=71 Identities=18% Similarity=0.058 Sum_probs=49.8
Q ss_pred CCceeEEecccCccchHHHHHHH--HHHc-cCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVL--STAL-FGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~--~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~ 672 (1193)
+.+++...|.||-. +..+.. .-.+ ....| -.+.+.++...+|+|||||.||+|+..+ ++-.++.++=++.
T Consensus 185 ~~~~i~~gG~DQ~~---ni~~grdla~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~ 257 (420)
T 1jil_A 185 LNCKIQVGGSDQWG---NITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWI 257 (420)
T ss_dssp HCEEEEEEEGGGHH---HHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHh
Confidence 58999999999964 333322 2223 33333 4667888888999999999999999775 3456677776666
Q ss_pred h
Q 000999 673 N 673 (1193)
Q Consensus 673 ~ 673 (1193)
+
T Consensus 258 ~ 258 (420)
T 1jil_A 258 N 258 (420)
T ss_dssp T
T ss_pred c
Confidence 5
No 49
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=95.56 E-value=0.0084 Score=76.51 Aligned_cols=78 Identities=27% Similarity=0.553 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHCCCeeeeccccc--------------cCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCcccc
Q 000999 414 DADKDIIEALKAKGRLVKTGSLTH--------------SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVP 479 (1193)
Q Consensus 414 ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P 479 (1193)
++-..+...|.++|++.......+ ..+.|||||.|++++..+|||+++++++++|++.++...-.|
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp 233 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWP 233 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhccccc
Confidence 466788889999999987553221 136799999999999999999999999999999998875448
Q ss_pred chhhhHhHHhhhh
Q 000999 480 DYVKEKRFHNWLE 492 (1193)
Q Consensus 480 ~~~~~~r~~~wl~ 492 (1193)
+.++ ..-.|||-
T Consensus 234 ~~v~-~~~~~wig 245 (880)
T 4arc_A 234 DTVK-TMQRNWIG 245 (880)
T ss_dssp HHHH-HHHHHHHC
T ss_pred HHHH-HHHHhhhc
Confidence 7765 45679985
No 50
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.55 E-value=0.0073 Score=70.64 Aligned_cols=71 Identities=18% Similarity=-0.006 Sum_probs=49.0
Q ss_pred CCceeEEecccCccchHHHHHHH--HHHc-cCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVL--STAL-FGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~--~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~ 672 (1193)
+.+++...|.||-. +..+.. .-.+ ....| -.+.+.++...+|+|||||.||+|+..+ ++-.++.++=++.
T Consensus 184 ~~~~i~~gG~DQ~~---ni~lgrdlarr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~ 256 (419)
T 2ts1_A 184 EGCRLQIGGSDQWG---NITAGLELIRKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWI 256 (419)
T ss_dssp HCEEEEEEEGGGHH---HHHHHHHHHHHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHh
Confidence 58999999999964 333322 2222 23333 4667888888999999999999999875 3456677776666
Q ss_pred h
Q 000999 673 N 673 (1193)
Q Consensus 673 ~ 673 (1193)
+
T Consensus 257 ~ 257 (419)
T 2ts1_A 257 N 257 (419)
T ss_dssp T
T ss_pred c
Confidence 5
No 51
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.37 E-value=0.0095 Score=69.86 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCceeEEecccCccchHHHHHHH--HHHccCCCCccEEEEEeeEEccCCccccccCCC-CCChhhhHhhcChhHHHHhHh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVL--STALFGKPAFRNLICNGLVLAEDGKKMSKKLKN-YPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~--~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-~v~P~~li~~yGaDalR~yL~ 672 (1193)
+.+++...|.||-. +..+.. .-.+....| -.+.+.++...+|+|||||.|| +|+..+ ++-.++.++=++.
T Consensus 186 ~~~~i~~gG~DQ~~---ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~ 258 (432)
T 2jan_A 186 HGCTLQIGGADQWG---NIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFV 258 (432)
T ss_dssp HCCCEEEECSTTHH---HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHh
Confidence 48999999999964 333222 222333444 4566788888899999999999 998775 3556777776666
Q ss_pred h
Q 000999 673 N 673 (1193)
Q Consensus 673 ~ 673 (1193)
+
T Consensus 259 ~ 259 (432)
T 2jan_A 259 N 259 (432)
T ss_dssp T
T ss_pred c
Confidence 5
No 52
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.34 E-value=0.0099 Score=68.23 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=37.7
Q ss_pred CCceeEEecccCccchHHHHHH--HHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMV--LSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~--~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
+.+++...|.||.. +..+. +.-.+....| -.+.+.++...+|+|||||.||+|+..+ ++-.++.++=++.+
T Consensus 209 ~~~~i~p~G~DQ~~---~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 209 YGCRVQLGGSDQLG---NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp HCCCEEEEEGGGHH---HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 48999999999964 32222 2222333344 3566788888899999999999999876 45677777777765
No 53
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.18 E-value=0.014 Score=68.69 Aligned_cols=70 Identities=27% Similarity=0.349 Sum_probs=50.1
Q ss_pred CCceeEEecccCccchHHHHHHHHHH-ccCCCCccEEEEEeeEEccCCc-cccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTA-LFGKPAFRNLICNGLVLAEDGK-KMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~~~pfk~v~~hG~vld~~G~-KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
+.+|+...|.||. ++..+..-++ -++..| .-++.+.++...+|. |||||.||+|+..+ .++.++=++.+
T Consensus 186 l~~~l~~gG~DQ~---~ni~l~rdlarr~~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~ 256 (432)
T 1h3f_A 186 IRADVEMGGTDQR---FNLLVGREVQRAYGQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMR 256 (432)
T ss_dssp HTCSEEEEEGGGH---HHHHHHHHHHHHTTCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred cCccEEEechHHH---HHHHHHHHHHHHhCCCC-ceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhC
Confidence 3489999999995 3333322221 123333 346778898889996 99999999999887 78888877776
Q ss_pred C
Q 000999 674 S 674 (1193)
Q Consensus 674 ~ 674 (1193)
.
T Consensus 257 ~ 257 (432)
T 1h3f_A 257 V 257 (432)
T ss_dssp S
T ss_pred C
Confidence 4
No 54
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=95.04 E-value=0.05 Score=64.89 Aligned_cols=74 Identities=24% Similarity=0.191 Sum_probs=53.4
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhCC
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINSP 675 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~~ 675 (1193)
.+-.+-|.|++- .......+.-++.-..| ....++++++.+|+||||++||+ ...++.++ |-++++|.|++..+
T Consensus 219 ithvirG~D~~~-~t~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 219 ITHVIRGDDHLS-NTLRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp CSEEEEEGGGHH-HHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CCeEEEChhHHH-hHHHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 355678888873 34444444444433333 56667888999999999999999 78888874 88999999998643
No 55
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.03 E-value=0.0082 Score=72.03 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=44.6
Q ss_pred cEEEEEeeEEccCCccccccCCC---------------CCChhhhHhh-cChhHHHHhHhhCCccccccccccHhHHHH
Q 000999 629 RNLICNGLVLAEDGKKMSKKLKN---------------YPSPVEVIND-YGADALRLYLINSPVVRAETLRFKKDGVFA 691 (1193)
Q Consensus 629 k~v~~hG~vld~~G~KMSKS~GN---------------~v~P~~li~~-yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~ 691 (1193)
-+.+.+|++ +.+|+|||||+|| .++..++.++ |.++|+|.||+..+... .+..++...+.+
T Consensus 253 P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~-~~~~~e~~~le~ 329 (553)
T 1qtq_A 253 PRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTK-QDNTIEMASLES 329 (553)
T ss_dssp CEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCS-SCCCBCHHHHHH
T ss_pred CCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCC-CccccchhhHHH
Confidence 355688886 5799999999997 6778888876 99999999998765522 233345544443
No 56
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.82 E-value=0.11 Score=59.28 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=48.3
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccC---CCCccEEEE-EeeEEccCCccccccCCCCCChhhhHhhcChhHHHH
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFG---KPAFRNLIC-NGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRL 669 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~---~~pfk~v~~-hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~ 669 (1193)
|-+++...|.||.... +.+-++.... .++ ..| .-++. +.++...+|+|||||.||.|+..+ .++.++=
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 5689999999997432 1122221111 123 122 33343 578888899999999999999887 7888888
Q ss_pred hHhhC
Q 000999 670 YLINS 674 (1193)
Q Consensus 670 yL~~~ 674 (1193)
.+.++
T Consensus 226 Ki~~a 230 (340)
T 2g36_A 226 TILRM 230 (340)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 77764
No 57
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=94.75 E-value=0.0076 Score=70.01 Aligned_cols=92 Identities=17% Similarity=0.075 Sum_probs=55.8
Q ss_pred CCcccccCCCCChhhhhhc---CCceeEEecccCccchHHHHHHHHHH--c-------------cCCCCc--cEEEEEee
Q 000999 577 MPYAYIHYPFENAEHFENN---FPGQFIAEGLDQTRGWFYTLMVLSTA--L-------------FGKPAF--RNLICNGL 636 (1193)
Q Consensus 577 ~p~a~~~~p~~~~~~f~~~---~Pad~~~~G~D~~r~Wf~~l~~~~~~--l-------------~~~~pf--k~v~~hG~ 636 (1193)
++++-+.||.-.--+|-.. +++++...|.||.. +..+..-++ + ..+.++ .-.+.+.+
T Consensus 209 is~gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~---ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pl 285 (392)
T 1y42_X 209 VSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYG---NIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPL 285 (392)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHH---HHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCC
T ss_pred cccHHHHHHHHHHHHHHHHhccCCccEEecCcchHh---HHHHHHHHHHHHhhhccccccccccccccccCCcccccccc
Confidence 4566666774222223222 48999999999942 222211111 0 111111 34567888
Q ss_pred EEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 637 VLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 637 vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
+...+|+|||||.||.|+..+= +-+++.++=++.+
T Consensus 286 l~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 320 (392)
T 1y42_X 286 LTDSSGAKFGKSAGNAIWLDPY--QTSVFDFYGYFVR 320 (392)
T ss_dssp CBCTTCCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred CcCCchhhccCCCCCeeeccCC--CCCHHHHHHHHHc
Confidence 8889999999999999987752 2456666666665
No 58
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=94.50 E-value=0.23 Score=56.57 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCceeEEecccCccch-HHHHHHHHH-HccC---CCCccEEEEE---eeEEccCC-ccccccCCCCCChhhhHhhcChhH
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLST-ALFG---KPAFRNLICN---GLVLAEDG-KKMSKKLKNYPSPVEVINDYGADA 666 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~-~l~~---~~pfk~v~~h---G~vld~~G-~KMSKS~GN~v~P~~li~~yGaDa 666 (1193)
|-+++...|.||.... +.+-++.-. ..+| ..| ..+++ .++...+| +|||||.||.|+..+= ++.
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~ 212 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EES 212 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHH
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccccCCCCccccCCCCCCeeeCcCC-----HHH
Confidence 6789999999997532 111111111 0123 122 33333 58888899 9999999999988763 777
Q ss_pred HHHhHhhC
Q 000999 667 LRLYLINS 674 (1193)
Q Consensus 667 lR~yL~~~ 674 (1193)
++=.+.++
T Consensus 213 i~~Ki~~a 220 (337)
T 2el7_A 213 IWQKIQHL 220 (337)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 77777664
No 59
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=93.94 E-value=0.1 Score=61.86 Aligned_cols=74 Identities=20% Similarity=0.065 Sum_probs=49.7
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhCC
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINSP 675 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~~ 675 (1193)
.+-.+-|.|++-.- .....+.-++ |-.++ ....++++++.+|+|||||+||. ...++.++ |-++++|-||+..+
T Consensus 200 ithvirG~D~~~~t-~~q~~l~~al-g~~~p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 274 (468)
T 1j09_A 200 VTDVIRAEEWLVST-PIHVLLYRAF-GWEAP-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG 274 (468)
T ss_dssp CCEEEEEGGGGGGH-HHHHHHHHHH-TCCCC-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS
T ss_pred CCeEEEChhhhhhH-HHHHHHHHHc-CCCCC-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc
Confidence 34456688886542 2222222233 22232 55566888999999999999999 67777764 78999999997643
No 60
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.84 E-value=0.04 Score=63.68 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=39.2
Q ss_pred CCceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEccCCccccccCCC-CCChhhhHhhcChhHHHHhHh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAEDGKKMSKKLKN-YPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-~v~P~~li~~yGaDalR~yL~ 672 (1193)
|-+++...|.||... ..+..-+ .+....| ..+.+.++...+|+|||||.|| +|+..|= ++.++=.+.
T Consensus 177 ~~a~~v~~G~DQ~~~---~~l~rdl~~r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~ 246 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKI---FTFAEKYLPALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLK 246 (372)
T ss_dssp TTCSEEEEEGGGHHH---HHHHHHHGGGGTCCCC--EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHH
T ss_pred hcCCEEEcChhHHHH---HHHHHHHHHHcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHH
Confidence 567899999999643 2222222 2212233 4567889989999999999999 7887653 666766665
Q ss_pred h
Q 000999 673 N 673 (1193)
Q Consensus 673 ~ 673 (1193)
+
T Consensus 247 ~ 247 (372)
T 1n3l_A 247 K 247 (372)
T ss_dssp T
T ss_pred H
Confidence 4
No 61
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=93.56 E-value=0.075 Score=68.18 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHCCCeeeeccc--------------cccCCcccC-CCCCeEEeeeCccccccHHHHHHHHHhhcCCccc
Q 000999 414 DADKDIIEALKAKGRLVKTGSL--------------THSYPFCWR-SDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWV 478 (1193)
Q Consensus 414 ea~~~Ii~~L~~~g~l~~~~~~--------------~h~yp~c~R-~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~ 478 (1193)
++-..++..|.++|++...... +-.++.||| ||++++.+..+|||+++++++++|++.++...|
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~- 212 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW- 212 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBS-
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCC-
Confidence 4567889999999999764221 112578999 999999999999999999999999999988775
Q ss_pred cchhhhHhHHhhhh
Q 000999 479 PDYVKEKRFHNWLE 492 (1193)
Q Consensus 479 P~~~~~~r~~~wl~ 492 (1193)
|+.++ ....||+.
T Consensus 213 p~~~~-~~~~~wi~ 225 (878)
T 2v0c_A 213 PEKVK-AMQRAWIG 225 (878)
T ss_dssp CHHHH-HHHHHHHC
T ss_pred CHHHH-HHHHHHhc
Confidence 87765 45678985
No 62
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=93.51 E-value=0.19 Score=60.09 Aligned_cols=75 Identities=20% Similarity=0.109 Sum_probs=50.9
Q ss_pred ceeEEecccCccchHHHHHHHHHHc----cCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHh
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTAL----FGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLI 672 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l----~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~ 672 (1193)
.+-.+-|.|++-.- .....+.-++ +|-.++ ....+.++++.+|+||||+.|++ ...++.+. |.++++|.||+
T Consensus 209 ithviRG~D~~~~t-~~q~~l~~aL~~~g~g~~~P-~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~ 285 (498)
T 2ja2_A 209 ITHVLRGEDLLPST-PRQLALHQALIRIGVAERIP-KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLA 285 (498)
T ss_dssp CCEEEEEGGGGGGH-HHHHHHHHHHHHTTSCCCCC-EEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHH
T ss_pred CCEEEEChhhhhcc-HHHHHHHHHHHhhcCCCCCC-eEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHH
Confidence 34566788887542 2222222222 133333 66677899999999999999994 67777764 88999999998
Q ss_pred hCC
Q 000999 673 NSP 675 (1193)
Q Consensus 673 ~~~ 675 (1193)
..+
T Consensus 286 ~lG 288 (498)
T 2ja2_A 286 LLG 288 (498)
T ss_dssp TSS
T ss_pred HhC
Confidence 644
No 63
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=93.50 E-value=0.18 Score=60.04 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=49.5
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
+-.+-|.|++-.= ...+.+--++ |-.++ ....++++++.+|+||||+.|+ +...++.+ .|-++++|-||+..+
T Consensus 213 ThViRG~D~l~~t-p~q~~l~~aL-G~~~P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG 286 (488)
T 3afh_A 213 SHVFRGEDHLSNT-PKQLMIYEAF-GWEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 286 (488)
T ss_dssp SEEEEEGGGGGGH-HHHHHHHHHH-TCCCC-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CEEEEchhhhhCH-HHHHHHHHHc-CCCCC-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 3455688886542 1222222223 32332 5666789999999999999999 57777776 478999999998654
No 64
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.051 Score=63.30 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCceeEEecccCccchHHHHHHHH--HHccCCCCccEEEEEeeEEccC-CccccccCCCC-CChhhhHhhcChhHHHHhH
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLS--TALFGKPAFRNLICNGLVLAED-GKKMSKKLKNY-PSPVEVINDYGADALRLYL 671 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~--~~l~~~~pfk~v~~hG~vld~~-G~KMSKS~GN~-v~P~~li~~yGaDalR~yL 671 (1193)
|.+++.+.|.||.. +..+..- -.+....| ..+.+.++...+ |+|||||.||. |+..|= ++.+|=.+
T Consensus 181 ~~~~~v~~G~DQ~~---~~~l~rdl~~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kKI 250 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK---IFVLAEENLPSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKKI 250 (394)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCCCCC----------CCSCBTTCC-----HHHHHHHH
T ss_pred hCCCEEecCccHHH---HHHHHHHHHHHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHHH
Confidence 67889999999964 3222222 22222233 456688888889 99999999996 886542 45555555
Q ss_pred hh
Q 000999 672 IN 673 (1193)
Q Consensus 672 ~~ 673 (1193)
.+
T Consensus 251 ~k 252 (394)
T 2dlc_X 251 NS 252 (394)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 65
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=92.50 E-value=0.083 Score=59.60 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=38.3
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCC-ccccccCCCCCChhh
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDG-KKMSKKLKNYPSPVE 657 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G-~KMSKS~GN~v~P~~ 657 (1193)
-+++...|.||.. +..+..- +....| -++.+.++...+| +|||||.||+|+..+
T Consensus 163 ~~~~v~~G~DQ~~---~~~l~R~--i~~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 163 GVDVAVGGMEQRK---IHMLARE--LLPKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp TCSEEEEEGGGHH---HHHHHHH--HSSSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred CCCEEEcChhHHH---HHHHHHH--hcCCCc--EEeeccccccCCcccccCCCCcceecCCC
Confidence 4788999999974 2233222 223333 4567888888999 799999999998654
No 66
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=92.03 E-value=0.061 Score=60.86 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=45.0
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccCC--CCccEEE--EEeeEEccCCccccccCCCCCChhhhHhhcChhHHHH
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGK--PAFRNLI--CNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRL 669 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~--~pfk~v~--~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~ 669 (1193)
|-+|+...|.||.... +.+-++.-.. .++. +.++.++ .+.++...+|+|||||.+|.|+..| .++.++=
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~~ 212 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLKK 212 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHHH
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHHH
Confidence 5689999999996422 1111211111 1111 1113444 3678888899999999999998765 5666666
Q ss_pred hHhh
Q 000999 670 YLIN 673 (1193)
Q Consensus 670 yL~~ 673 (1193)
.+.+
T Consensus 213 KI~~ 216 (322)
T 3tzl_A 213 QISS 216 (322)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6654
No 67
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=91.89 E-value=0.07 Score=61.91 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=27.6
Q ss_pred ceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEccCC--ccccccCCCCCChhh
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAEDG--KKMSKKLKNYPSPVE 657 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN~v~P~~ 657 (1193)
+++...|.||-. +..+..-+ .+....| .++.+.++...+| +|||||.||+|+..|
T Consensus 225 ~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDP---YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHH---HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHH---HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 789999999964 33332222 2323333 4567888888899 799999999997654
No 68
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=91.67 E-value=0.098 Score=61.43 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=33.5
Q ss_pred CCceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEccCC--ccccccCCC-CCChhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAEDG--KKMSKKLKN-YPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-~v~P~~ 657 (1193)
|-+++...|.||-. +..+..-+ .+....| .++.+.++...+| +|||||.+| +|+..+
T Consensus 248 ~~~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP---YFRVCRDVADKLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH---HHHHHHHHHHHHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH---HHHHHHHHHHHhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 45788999999964 33322221 2222345 3577889999999 999999999 888654
No 69
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.27 Score=57.11 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHH
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYN 118 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~ 118 (1193)
+.++.+|.|. -|||.||+||.++.+. ..++++ .|+++.+..| |-|++=.. .+...
T Consensus 37 ~~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~-D~ha~t~~--------~~~~~----------- 91 (394)
T 2dlc_X 37 KRHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA-DLHAFLDN--------MKAPL----------- 91 (394)
T ss_dssp CSCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC-HHHHHHTT--------TSSCT-----------
T ss_pred CCCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc-CCccccCC--------CCCcH-----------
Confidence 4567777776 3389999999876543 344444 7888877666 33333111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRND 148 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~ 148 (1193)
+.++..+..|...+...+..+| +||++.
T Consensus 92 e~~~~~~~~~~~~i~~~l~a~G--ldp~k~ 119 (394)
T 2dlc_X 92 EVVNYRAKYYELTIKAILRSIN--VPIEKL 119 (394)
T ss_dssp THHHHHHHHHHHHHHHHHHHTT--CCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CChhHc
Confidence 1234455667777788889999 888874
No 70
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=91.45 E-value=0.11 Score=60.04 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCceeEEecccCccchHHHHHHHHHH-ccCCCCcc-EEEEEeeEEcc-CCc-cccccC-CCCCChh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTA-LFGKPAFR-NLICNGLVLAE-DGK-KMSKKL-KNYPSPV 656 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~~~pfk-~v~~hG~vld~-~G~-KMSKS~-GN~v~P~ 656 (1193)
+-+|+...|.||-. +.++..-++ -++.. |+ .++.+.++... +|. |||||. +|+|+..
T Consensus 199 l~ad~vpgG~DQ~~---~l~l~Rdla~r~~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 199 LNVDICQLGIDQRK---VNMLAREYCDIKKIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHHTCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred cCCcEEEcchhhHH---HHHHHHHHHHHhCCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 45889999999964 333322221 12322 22 46678888874 895 999999 5898864
No 71
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=91.39 E-value=0.29 Score=61.48 Aligned_cols=60 Identities=13% Similarity=-0.059 Sum_probs=43.4
Q ss_pred EEEEEeeEEccCCccccccCCC---------------CCChhhhHhh-cChhHHHHhHhhCCccccccccccHhHHHH
Q 000999 630 NLICNGLVLAEDGKKMSKKLKN---------------YPSPVEVIND-YGADALRLYLINSPVVRAETLRFKKDGVFA 691 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN---------------~v~P~~li~~-yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~ 691 (1193)
+.+.+|++. .+|+|||||+|| .++..++.++ |.++++|.|++..+... .+..++...+..
T Consensus 294 ~~~~fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~-~~~~~e~~~le~ 369 (851)
T 2hz7_A 294 HQYEFGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSR-TNRTVDIAVYEN 369 (851)
T ss_dssp EEEEECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCS-SCEEECHHHHHH
T ss_pred CceEEEEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCC-CcccccHHHHHH
Confidence 455778865 599999999987 5667788866 99999999998876532 233445544443
No 72
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=91.24 E-value=0.061 Score=61.57 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=45.2
Q ss_pred CCceeEEecccCccch-HHHHHHHHH-HccC---CCCccEEEE-EeeEEccCCc-cccccCCCCCChhhhHhhcChhHHH
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLST-ALFG---KPAFRNLIC-NGLVLAEDGK-KMSKKLKNYPSPVEVINDYGADALR 668 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~-~l~~---~~pfk~v~~-hG~vld~~G~-KMSKS~GN~v~P~~li~~yGaDalR 668 (1193)
|-+++...|.||.... +.+-++.-. ..+| ..| .-++. +.++...+|+ |||||.||.|+..+= ++.++
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~ 234 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVA 234 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHH
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHH
Confidence 5689999999997422 111121111 1123 122 33443 5678888997 999999999987653 66677
Q ss_pred HhHhhC
Q 000999 669 LYLINS 674 (1193)
Q Consensus 669 ~yL~~~ 674 (1193)
=.+.++
T Consensus 235 ~Ki~~a 240 (351)
T 1yi8_B 235 RKVMGM 240 (351)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 666653
No 73
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=91.03 E-value=0.16 Score=58.82 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=36.8
Q ss_pred ceeEEecccCccchHHHHHHHHHH-ccC-CCCccEEEEEeeEEccCC--ccccccCCC-CCChh
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTA-LFG-KPAFRNLICNGLVLAEDG--KKMSKKLKN-YPSPV 656 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~-l~~-~~pfk~v~~hG~vld~~G--~KMSKS~GN-~v~P~ 656 (1193)
+++...|.||.. +..+..-++ -++ ..| ..+.+.++...+| +|||||.+| +|+..
T Consensus 208 a~~vpvG~DQ~~---hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 208 RCLIPAAIDQDP---YWRLQRDFAESLGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp CEEEEEEGGGHH---HHHHHHHHTGGGTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred CceeecccchHH---HHHHHHHHHHHcCCCCC--eeeecccccCCCCCccccccCCCCCeeeCC
Confidence 788899999964 333333222 123 333 4566888888899 599999999 88643
No 74
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=90.98 E-value=0.17 Score=59.44 Aligned_cols=57 Identities=25% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCceeEEecccCccchHHHHHHHHHH-ccC-CCCccEEEEEeeEEccCC--ccccccCCC-CCChhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTA-LFG-KPAFRNLICNGLVLAEDG--KKMSKKLKN-YPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~-~~pfk~v~~hG~vld~~G--~KMSKS~GN-~v~P~~ 657 (1193)
|-++++..|.||-. +..+..-++ -++ ..| .++.+.++...+| +|||||.+| +|+..+
T Consensus 255 ~~~~lVpvG~DQ~~---~i~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHH---HHHHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 55677778999963 333333322 123 344 3577889999999 899999999 888654
No 75
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=90.74 E-value=0.17 Score=61.71 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=47.5
Q ss_pred EEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 601 IAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 601 ~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
.+-|.|++-. -.....+--++ |-.++ ....++++++.+|+|||||.|| +...++.+ .|-++++|-||+..+
T Consensus 319 virG~D~~~~-t~~q~~l~~al-g~~~P-~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 319 VFRGEDHLSN-TPKQLMIYEAF-GWEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp CCEEGGGGGG-HHHHHHHHTTT-TCCCC-BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred EEEchhhHhC-HHHHHHHHHHh-CCCCC-eEEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 3456776543 22222222233 33332 4556678889999999999999 57788877 488999999998654
No 76
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=90.70 E-value=0.14 Score=59.25 Aligned_cols=53 Identities=25% Similarity=0.177 Sum_probs=25.0
Q ss_pred eeEEecccCccchHHHHHHHHHH--ccCCCCccEEEEEeeEEccCC--ccccccCCC-CCChh
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTA--LFGKPAFRNLICNGLVLAEDG--KKMSKKLKN-YPSPV 656 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-~v~P~ 656 (1193)
.++..|.||-. +..+..-++ +....| .++.+.++...+| +|||||.+| .|+..
T Consensus 222 ~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~ 279 (393)
T 3hv0_A 222 CLVPHAIDQDP---YFRMVRDVAPRLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVN 279 (393)
T ss_dssp EEEEEEGGGHH---HHHHHHHHTGGGTCCCC--EEEEECCCCC-------------CCCCBTT
T ss_pred eecccccchHH---HHHHHHHHHHHcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEecc
Confidence 46788999963 333332222 222233 4667888888899 799999998 78754
No 77
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=90.59 E-value=0.13 Score=59.09 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEccC-----------------Ccccccc-CCCCCCh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAED-----------------GKKMSKK-LKNYPSP 655 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~~-----------------G~KMSKS-~GN~v~P 655 (1193)
|-+|+...|.||.. +..+..-+ .+....| .++.+.++...+ |+||||| .+|+|+.
T Consensus 176 ~~~~~v~~G~DQ~~---~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L 250 (364)
T 2cya_A 176 MDLDIALGGMDQRK---AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFV 250 (364)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBT
T ss_pred cCCCEEeccchHHH---HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeec
Confidence 55789999999964 33332222 2222334 356778888888 7999999 7899987
Q ss_pred hhhHhhcChhHHHHhHhh
Q 000999 656 VEVINDYGADALRLYLIN 673 (1193)
Q Consensus 656 ~~li~~yGaDalR~yL~~ 673 (1193)
.+= ++.++=.+.+
T Consensus 251 ~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 251 VDS-----DDDIRRKIRK 263 (364)
T ss_dssp TCC-----HHHHHHHHHT
T ss_pred cCC-----HHHHHHHHHh
Confidence 653 6666666654
No 78
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=90.46 E-value=0.17 Score=58.88 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCceeEEecccCccchHHHHHHH--HHHccCCCCccEEEEEeeEEccCC--ccccccC-CCCCChhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVL--STALFGKPAFRNLICNGLVLAEDG--KKMSKKL-KNYPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~--~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~-GN~v~P~~ 657 (1193)
+-+++...|.||-. +..+.. .-.+....| .++.+.++...+| +|||||. +|+|+..|
T Consensus 242 ~~a~lvpvG~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 242 GAMCLVPAAVDQDP---FFRLARDKAKALGEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCCeEEeeccchHH---HHHHHHHHHHHcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 44788999999964 333322 222222333 4557888888899 6999999 78997543
No 79
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=90.33 E-value=0.22 Score=57.53 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=37.6
Q ss_pred ceeEEecccCccchHHHHHHH--HHHccCCCCccEEEEEeeEEccCCc-ccccc-CCCCCChhh
Q 000999 598 GQFIAEGLDQTRGWFYTLMVL--STALFGKPAFRNLICNGLVLAEDGK-KMSKK-LKNYPSPVE 657 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~--~~~l~~~~pfk~v~~hG~vld~~G~-KMSKS-~GN~v~P~~ 657 (1193)
++++.-|.||-. +..+.. +-.+....| .++.+.++...+|. ||||| .||+|+..|
T Consensus 225 a~~VpvG~DQ~~---hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQ---FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHH---HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 677777999964 333322 222333344 56788888888995 99999 899997654
No 80
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=89.96 E-value=0.22 Score=59.14 Aligned_cols=57 Identities=25% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCceeEEecccCccchHHHHHHHHHH-ccC-CCCccEEEEEeeEEccCC--ccccccCCC-CCChhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTA-LFG-KPAFRNLICNGLVLAEDG--KKMSKKLKN-YPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~-~~pfk~v~~hG~vld~~G--~KMSKS~GN-~v~P~~ 657 (1193)
|-++++..|.||.. +..+..-++ -++ ..|. ++.+.++...+| +|||||.|| +|+..+
T Consensus 302 ~~~~~VpvG~DQ~~---~i~l~Rdla~r~~~~~p~--~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 302 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKPA--LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCCE--EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred CCceeEeccccHHH---HHHHHHHHHHHhCCCCce--eeecccccCCCCCccccCCCCCCCceeecC
Confidence 45677778999964 333333222 122 3443 577889999999 899999999 888643
No 81
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=89.86 E-value=0.18 Score=57.63 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=35.4
Q ss_pred CceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEcc-CC-ccccccC-CCCCChh
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAE-DG-KKMSKKL-KNYPSPV 656 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~-~G-~KMSKS~-GN~v~P~ 656 (1193)
-+|+...|.||.. +..+..-. .+....| -++.+.++... +| +|||||. +|+|+..
T Consensus 186 ~~~~~~~G~DQ~~---~i~l~Rdia~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~ 245 (348)
T 2j5b_A 186 GIDICQLGIDQRK---VNMLAIEYANDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMD 245 (348)
T ss_dssp CCSEECCBGGGHH---HHHHHHHHHHHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTT
T ss_pred CCcEEEeccChHH---HHHHHHHHHHHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeec
Confidence 4788889999964 22332222 2222223 45667777777 67 7999999 6889754
No 82
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=86.60 E-value=0.25 Score=55.97 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCceeEEecccCccch-HHHHHHHHH-HccCC---CCccEEEE--EeeEEccCC--ccccccCCC-C--CChh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLST-ALFGK---PAFRNLIC--NGLVLAEDG--KKMSKKLKN-Y--PSPV 656 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~-~l~~~---~pfk~v~~--hG~vld~~G--~KMSKS~GN-~--v~P~ 656 (1193)
|-+|+...|.||.... +.+-++... ..++. .| .-++. +.++...+| +|||||.|| . |+..
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~ 207 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL 207 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeec
Confidence 5689999999997432 111111111 11121 12 23332 467777888 999999999 6 7654
No 83
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=86.59 E-value=0.39 Score=59.63 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=37.3
Q ss_pred CCceeEEecccCccchHHHHHHHHHH-ccCCCCcc-EEEEEeeEEcc-CCc-cccccCC-CCCChh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTA-LFGKPAFR-NLICNGLVLAE-DGK-KMSKKLK-NYPSPV 656 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~~~pfk-~v~~hG~vld~-~G~-KMSKS~G-N~v~P~ 656 (1193)
+-+|+...|.||-. +.++..-.+ -++.. |+ .++.+.++... +|. |||||.+ |+|+..
T Consensus 182 ~~ad~vpvG~DQ~~---~l~l~Rdla~r~n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 182 LKADICQLGLDQRK---VNMLAREYCDLIGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHTTCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred hCCCEEeccccHHH---HHHHHHHHHHHhCCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 56889999999964 333332222 12322 22 45678888887 884 9999998 788753
No 84
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=85.82 E-value=1 Score=51.69 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
+++.+|.|. -|||.||+|| +.-+.+ +.+++. .|+++.+..| |-|++
T Consensus 34 ~~~~iy~G~-~PTg~lHlG~-l~~l~~--~~~lQ~-~G~~~~~~ia-D~~a~ 79 (364)
T 2cya_A 34 ARIKGYIGY-EPSGVAHIGW-LVWMYK--VKDLVE-AGVDFSVLEA-TWHAY 79 (364)
T ss_dssp SCCEEEEEE-CCCSSCBTHH-HHHHHH--HHHHHH-TTCEEEEEEC-HHHHH
T ss_pred CCCEEEecc-CCCCCccHhH-HHHHHH--HHHHHH-CCCCEEEEEe-Ccchh
Confidence 346677775 4479999999 554433 444444 4999888777 55554
No 85
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=85.47 E-value=0.34 Score=55.34 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCceeEEecccCccch-HHHHHHHHH-HccCC---CCccEEEE--EeeEEccCC--ccccccCCC---CCChhh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLST-ALFGK---PAFRNLIC--NGLVLAEDG--KKMSKKLKN---YPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~-~l~~~---~pfk~v~~--hG~vld~~G--~KMSKS~GN---~v~P~~ 657 (1193)
|-+|+...|.||.... +.+-++... ..++. .| .-++. +.++...+| +|||||.+| +|+..|
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 5689999999997532 111121111 11231 22 22332 467777788 999999999 887654
No 86
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=85.20 E-value=2.6 Score=50.06 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=53.8
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCCcc
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSPVV 677 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~~~ 677 (1193)
+-++-|.|.+-.= ...+.+--++.-..| ....+.++++.+|+||||+.|. +...++.+ .|.+++++=||+..+..
T Consensus 222 ThViRG~D~l~~t-prq~~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s 297 (490)
T 4g6z_A 222 THVIRGDDHVNNT-PRQINILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWS 297 (490)
T ss_dssp CEEEEEGGGGGGH-HHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBC
T ss_pred CEEEeccccccCh-HHHHHHHHHcCCCCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 3455577776431 122222223322333 5667788999999999999986 56677665 48899999999875432
Q ss_pred ccccccccHhHH
Q 000999 678 RAETLRFKKDGV 689 (1193)
Q Consensus 678 ~~~d~~Fs~~~v 689 (1193)
.++.--|+.+.+
T Consensus 298 ~~~~e~~s~~el 309 (490)
T 4g6z_A 298 HGDAEIFTREQF 309 (490)
T ss_dssp CTTCCCCCHHHH
T ss_pred CCCccccCHHHH
Confidence 222223565544
No 87
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=85.13 E-value=1.2 Score=50.17 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=44.2
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCC-CcchhhhcCHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIK-RRDDVFQMGIDKYN 118 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~-~~~~~~~~g~~~f~ 118 (1193)
+++.+|.|. -|||.||+||+.. +. .+.+++. .|+++.+..|= -|++= +-+ ..+
T Consensus 31 ~~~~vy~G~-~PTg~lHlG~l~~-l~--~~~~lq~-~g~~~~~~i~D-~~a~~---------~d~~~~~----------- 84 (323)
T 2cyb_A 31 EKPRAYVGY-EPSGEIHLGHMMT-VQ--KLMDLQE-AGFEIIVLLAD-IHAYL---------NEKGTFE----------- 84 (323)
T ss_dssp SCCEEEEEE-CCCSCCBHHHHHH-HH--HHHHHHH-TTCEEEEEECH-HHHHH---------TTCCCHH-----------
T ss_pred CCCEEEECc-CCCCcchHHHHHH-HH--HHHHHHH-CCCcEEEEECC-ceeEc---------CCCCCHH-----------
Confidence 446778887 5789999999632 22 3444443 48887666643 23321 111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRND 148 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~ 148 (1193)
.++ ++...+..++..+| +||++.
T Consensus 85 -~i~----~~~~~~~~~~~a~G--ldp~k~ 107 (323)
T 2cyb_A 85 -EIA----EVADYNKKVFIALG--LDESRA 107 (323)
T ss_dssp -HHH----HHHHHHHHHHHHTT--CCTTTC
T ss_pred -HHH----HHHHHHHHHHHHhC--CCccce
Confidence 222 34456667888899 788874
No 88
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=84.85 E-value=0.41 Score=55.21 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=44.8
Q ss_pred CCceeEEecccCccchHHHHHHHHHH-ccCC----------CCccEEEEEeeEEccCC------------------cccc
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTA-LFGK----------PAFRNLICNGLVLAEDG------------------KKMS 646 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~~----------~pfk~v~~hG~vld~~G------------------~KMS 646 (1193)
|-+|+...|.||.. +..+..-++ -++. .| -++.+.++...+| +|||
T Consensus 179 ~~~~~vp~G~DQ~~---~i~l~rdla~r~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMS 253 (375)
T 2cyc_A 179 QGVTIAHAGMDQRK---AHVIAIEVAQKLRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMS 253 (375)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGCSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGG
T ss_pred hCCCeecccchHHH---HHHHHHHHHHHhCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhccc
Confidence 56889999999963 333333222 1222 22 2466788888888 8999
Q ss_pred ccC-CCCCChhhhHhhcChhHHHHhHhh
Q 000999 647 KKL-KNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 647 KS~-GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
||. +|+|+..|= ++.+|=.+.+
T Consensus 254 KS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 254 KSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp GSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred CCCCCCeeccCCC-----HHHHHHHHHH
Confidence 999 788987653 5666666554
No 89
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=84.35 E-value=0.51 Score=55.40 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=33.0
Q ss_pred eEEecccCccchHHHHHHHHHH-ccCCCCccEEEEEeeEEccCCc--cccccCCC-CCCh
Q 000999 600 FIAEGLDQTRGWFYTLMVLSTA-LFGKPAFRNLICNGLVLAEDGK--KMSKKLKN-YPSP 655 (1193)
Q Consensus 600 ~~~~G~D~~r~Wf~~l~~~~~~-l~~~~pfk~v~~hG~vld~~G~--KMSKS~GN-~v~P 655 (1193)
+..-|.||.. +.+++.-++ -++.++ ..++.+.++...+|. |||||.+| +|..
T Consensus 290 ~VPvG~DQ~~---hlel~Rdia~rfn~~~-p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP---YFRLARDLAPRMGHPK-NAYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH---HHHHHHHHTTTTTSCC-CEEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH---HHHHHHHHHHHhCCCC-CeeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 5667999975 223332222 133322 246678888888885 99999998 6653
No 90
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=84.18 E-value=0.55 Score=52.41 Aligned_cols=52 Identities=27% Similarity=0.231 Sum_probs=20.4
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCC
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNY 652 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~ 652 (1193)
.+..+-|.|++-.- .....+-- .+|..+ -.+..++++++.+|+|||||+||+
T Consensus 185 iThvIrG~D~l~~t-~~q~~l~~-alG~~~-p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 185 VTEIVRGADLIEPT-VRQISLYQ-LFGWKV-PDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp CCEEEEEGGGHHHH-HHHHHHHH-HHTCCC-CEEEEECBCCC-------------
T ss_pred CCEEEeCccccccH-HHHHHHHH-HcCCCC-CeEEEeeeeECCCCCcccccCCcc
Confidence 34455588987431 11111111 223333 467888998899999999999998
No 91
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=80.75 E-value=1.8 Score=49.94 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
.+.++.+|.|.= |||.||+||.+.... ..+++...|++|.+..| |-|++
T Consensus 70 ~~~p~~i~sG~~-PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~ 118 (392)
T 3jxe_A 70 EGRGFFLYTGRG-PSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKF 118 (392)
T ss_dssp TTCCCEEEEEEC-CSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHH
T ss_pred cCCCeEEEeccC-CCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHh
Confidence 345677888873 459999999987542 12234445998888877 55543
No 92
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=78.04 E-value=3.3 Score=47.58 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
++..+|.|.- |||.||+||.++.+. ..++++ .|+++.+..|
T Consensus 34 ~~~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 34 RELKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp SCCEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 3347778775 789999999876543 444444 6888777666
No 93
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=75.26 E-value=0.9 Score=51.25 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=27.9
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
+|.|. -|||.||+||.++-+.+ +.+++. |+++.+..| |-|++
T Consensus 6 vysG~-~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~ 47 (322)
T 3tzl_A 6 VLTGL-QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAM 47 (322)
T ss_dssp BEEEE-CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHT
T ss_pred EEEcc-CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeee
Confidence 34443 25689999999875544 445555 999887776 55653
No 94
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=73.01 E-value=0.94 Score=51.46 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccCC--CCc---cEEEE--EeeEEcc-CC-ccccccC---CCCCChh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGK--PAF---RNLIC--NGLVLAE-DG-KKMSKKL---KNYPSPV 656 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~--~pf---k~v~~--hG~vld~-~G-~KMSKS~---GN~v~P~ 656 (1193)
|-+|+...|.||.... +.+-++...- .++. .+| .-++. +.++... +| +|||||. +|+|...
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~ 216 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLL 216 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTT
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecC
Confidence 5688999999997532 2222222211 1232 222 22322 3445444 57 6999999 8999654
No 95
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=71.15 E-value=2.1 Score=48.03 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=27.5
Q ss_pred CCcEEEEcCC-CCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 39 QPEYVFYDGP-PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 39 ~~~f~~~~gP-P~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
++++.+|.|. | ||.||+|| +.-+.. +.+++. .|+++.+..|
T Consensus 26 ~~~~~vy~G~~P--Tg~lHlGh-l~~l~~--~~~lQ~-~g~~~~~~i~ 67 (314)
T 2zp1_A 26 KDEKSAYIGFEP--SGKIHLGH-YLQIKK--MIDLQN-AGFDIIILLA 67 (314)
T ss_dssp SSSEEEEEEECC--CSSCBHHH-HHHHHH--HHHHHH-TTEEEEEEEC
T ss_pred CCCCEEEEccCC--CCCcchhh-HHHHHH--HHHHHH-CCCCEEEEEe
Confidence 3456777775 5 68999999 554432 444444 4899877776
No 96
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=69.29 E-value=2.2 Score=48.44 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=32.5
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccCCCCc--cEEEEE---eeEEcc-CC-ccccccCC---CCCChh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGKPAF--RNLICN---GLVLAE-DG-KKMSKKLK---NYPSPV 656 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~~pf--k~v~~h---G~vld~-~G-~KMSKS~G---N~v~P~ 656 (1193)
|-+|+...|.||.... +.+-++...- .++ .+| ...+++ .++... +| +|||||.+ |.|+..
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~ 222 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYG-DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL 222 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHS-SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccC-CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCC
Confidence 5689999999997532 2222222211 122 122 132333 233443 67 59999997 688653
No 97
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=68.87 E-value=3.5 Score=47.36 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCceeEEecccCccch-HHHHHHHHHHccCC--CCccEEEEEeeEEccCCccccccCC-CCCCh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTALFGK--PAFRNLICNGLVLAEDGKKMSKKLK-NYPSP 655 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~l~~~--~pfk~v~~hG~vld~~G~KMSKS~G-N~v~P 655 (1193)
|-+.++.-|.||..-. +.+-+ +-.+... .|-...+.+-++-..+|+|||||.. |+|..
T Consensus 207 y~a~~VPVG~DQ~~hleltRdi--A~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 207 YRHVVVPVGADQDPHLRLTRDL--ADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHH--HHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred ccceecccchhhHHHHHHHHHH--HHHhcCcccccChhhhhhcccCCCCCCccCCCCCCccccc
Confidence 4567888899998521 22222 2222221 2334667777777789999999984 46643
No 98
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=68.68 E-value=9.1 Score=44.08 Aligned_cols=45 Identities=4% Similarity=-0.030 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
.+.++.+|.|. -|||.||+||..... +..+++..-|..|....|-
T Consensus 79 ~~~~~~vysG~-~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~D 123 (386)
T 3hzr_A 79 AKKPTFIFIQK-YPQKEVALEEYITLE---FARYLQDAFNIQVIIQILD 123 (386)
T ss_dssp TTCCEEEEEEE-CCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEECH
T ss_pred cCCCeEEEecc-CCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeCc
Confidence 35678888887 346889999987752 2333555558877777553
No 99
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=67.14 E-value=5.9 Score=44.67 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=25.3
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhh
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG 90 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hG 90 (1193)
+|.|. -|||.||+||.++.+.+ +.+++ .||++.+..| |-|+
T Consensus 4 vysG~-~PTG~lHlGn~vg~l~~--~~~lQ--~g~~~~~~Ia-D~ha 44 (328)
T 1i6k_A 4 IFSGI-QPSGVITIGNYIGALRQ--FVELQ--HEYNCYFCIV-DQHA 44 (328)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHHT--TTSEEEEEEC-HHHH
T ss_pred EEEee-CCCCcccHHHHHHHHHH--HHHHH--cCCcEEEEEe-Ccee
Confidence 44444 14589999999876632 22333 3999877666 4444
No 100
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=66.20 E-value=2 Score=49.43 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
.+++|.++.|- -|||.||+||.+. .++ .++....|++|.+..+ |-|.+
T Consensus 67 ~gk~~~v~sG~-~PTG~lHLGhyv~-~~~---~~~lq~~~~~~~~~Ia-D~ha~ 114 (372)
T 3a04_A 67 RGERVAVLTGF-MPSGKFHFGHKLT-VDQ---LIYLQKNGFKVFVAIA-DAEAF 114 (372)
T ss_dssp TTCCCEEEEEE-CCCSCCBHHHHHH-HHH---HHHHHHTTCEEEEEEC-HHHHH
T ss_pred cCCCCEEEeCc-CCCcHhHHHHHHH-HHH---HHHHHhCCCeEEEEEe-cchhh
Confidence 45567777875 4589999999884 332 4444456999977665 54543
No 101
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=65.41 E-value=3.1 Score=47.97 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccCCCCc--cEEEEE---eeEEcc-CC-ccccccC---CCCCChh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGKPAF--RNLICN---GLVLAE-DG-KKMSKKL---KNYPSPV 656 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~~pf--k~v~~h---G~vld~-~G-~KMSKS~---GN~v~P~ 656 (1193)
|-+|+...|.||.... +.+-++.-.- .++ .+| ..-+++ ..+... +| +|||||. ||+|...
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~ 241 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYN-DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLL 241 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTC-SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTT
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccC-CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecC
Confidence 5689999999997422 2222222111 112 122 122222 222322 44 7999999 8999754
No 102
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=62.84 E-value=4.3 Score=46.63 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=29.0
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHH-HHHHHHHcCCccceecccchhhH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDI-VTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi-~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
+..+|.|. -|||.||+|| .+++=+ +.+++ ..|++|.+..| |-|++
T Consensus 56 ~~~iy~G~-~PTg~lHlG~---gvl~~~~~~~lQ-~~G~~~~~lIa-D~ha~ 101 (373)
T 3vgj_A 56 KLICYDGF-EPSGRMHIAQ---GLLKSIIVNKLT-SNGCTFIFWIA-DWFAH 101 (373)
T ss_dssp SCEEEEEE-CCCSSCBHHH---HHHHHHHHHHHH-TTTCEEEEEEC-HHHHH
T ss_pred CceEEeCC-CCCCCceehh---hHHHHHHHHHHH-HCCCcEEEEEe-cceeE
Confidence 34677776 2347999999 333332 44444 35999888777 66665
No 103
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=62.28 E-value=8.6 Score=43.74 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLP 92 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlp 92 (1193)
++.+|.|. -|||.||+||.++-+. -+.+++. .|++.+..| |-|++=
T Consensus 22 ~~~vysG~-~PTG~lHLGn~~g~l~--~~~~lQ~--~~~~~~~Ia-D~ha~~ 67 (351)
T 1yi8_B 22 RPRVLTGD-RPTGALHLGHLAGSLQ--NRVRLQD--EAELFVLLA-DVQALT 67 (351)
T ss_dssp CSEEEEEE-CCSSCCBHHHHHHTHH--HHHHHTS--SSEEEEEEC-HHHHHH
T ss_pred CcEEEEee-CCCCCccHHHHHHHHH--HHHHHHH--hCCeEEEEe-cchhhc
Confidence 45667765 2279999999987542 1223332 367655543 455553
No 104
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=61.10 E-value=5 Score=45.64 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
++++.+|.|. -|||.||+||.+.-+. .+.++++ .|+++.+..|=
T Consensus 38 ~~~~~vy~G~-~PTg~lHlGhyl~~l~--~~~~lQ~-~G~~~~~~i~D 81 (348)
T 2j5b_A 38 GRIFTAYNGF-EPSGRIHIAQALITVM--NTNNMIE-CGGQMIIYIAD 81 (348)
T ss_dssp TCCEEEEEEE-CCCSSCBHHHHHHHHH--HHHHHHH-TTEEEEEEECH
T ss_pred CCCCEEEecc-CCCCCCchhHHHHHHH--HHHHHHH-cCCcEEEEecc
Confidence 3456778887 3449999999443332 2445555 48888776653
No 105
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=52.73 E-value=8.7 Score=47.64 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=30.2
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHH-HHHHHHHcCCccceecccchhhH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDI-VTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi-~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
+++.+|.|. -|||.||+|| ++++-+ +.+++. .|++|.+..| |-|++
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CCceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 457788887 3457999999 333322 445554 5999877766 66664
No 106
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=52.26 E-value=4.5 Score=46.58 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=27.4
Q ss_pred CcEE----EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 40 PEYV----FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 40 ~~f~----~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
.+|+ ++.|. -|||.||+||.++.+-+ ..+++ .|++|.+..+ |-|++
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAl 79 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAI 79 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHT
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceee
Confidence 4565 77776 35699999998875432 22222 4999877664 55554
No 107
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=52.17 E-value=24 Score=42.14 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=53.7
Q ss_pred ceeEEecccCccch-HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 598 GQFIAEGLDQTRGW-FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 598 ad~~~~G~D~~r~W-f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
..-++-|.|.+-.= .+.++.- ++ |-+| .....|.++++.+|+|+||+.|.. ...+..+ .|=++|+.=||+.-+
T Consensus 230 ITHViRG~D~l~sTp~q~~l~~--al-g~~~-P~y~H~pli~~~~g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 230 ITHVLRAQEWVSSGPLHVLLYK--AF-KWKP-PIYCHLPMVMGNDGQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp CSEEEEEGGGGGGHHHHHHHHH--HH-TCCC-CEEEEECCCBCTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHSS
T ss_pred CceeccccccccccHHHHHHHH--Hc-CCCC-CeEEecchhccccccccCcccccc-cHHHHHHcCCChHHHHHHHHHhC
Confidence 34566677776541 2222211 22 2233 268889999999999999998754 5666655 488999999987643
Q ss_pred ccccc-cccccHhHHH
Q 000999 676 VVRAE-TLRFKKDGVF 690 (1193)
Q Consensus 676 ~~~~~-d~~Fs~~~v~ 690 (1193)
-..++ .--|+.+.+.
T Consensus 305 ws~~~~~Eifs~~eli 320 (512)
T 4gri_A 305 WSYDDKREFFSKNDLE 320 (512)
T ss_dssp BCSSSSCCCCCHHHHH
T ss_pred CCCcccchhhhHHHHH
Confidence 21122 2346665543
No 108
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=50.09 E-value=18 Score=41.86 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCCCCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 38 CQPEYVFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
.+++|.+|.|. -||| .||+||..... ...+++..-|..+....|
T Consensus 98 ~~~p~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia 142 (406)
T 3tze_A 98 NNRPFYLYTGR-GPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT 142 (406)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred cCCCeEEEEee-CCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee
Confidence 35678888887 4567 89999987642 233355555877777655
No 109
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=49.84 E-value=21 Score=41.23 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCCCC-CccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 38 CQPEYVFYDGPPFAT-GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~n-G~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
.++++.+|.|.= || |.||+||..... ...++++.-|..|.+..|=+
T Consensus 71 ~g~~~~vy~G~~-PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~D~ 117 (393)
T 3hv0_A 71 KGELFYLYTGRG-PSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLTDD 117 (393)
T ss_dssp TTCCCEEEEEEC-CSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEECHH
T ss_pred cCCCeEEEeCCC-CCCCCccHHHHHHHH---HHHHHHHhcCCCeEeeccCh
Confidence 345678888872 34 789999976644 24446666577766655443
No 110
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=48.14 E-value=28 Score=40.19 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCCCCCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecccchh
Q 000999 38 CQPEYVFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCH 89 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~h 89 (1193)
.++++.+|.|. -||| .||+||.... ....+++..-|..|....|=++|
T Consensus 75 ~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~~ 123 (395)
T 3i05_A 75 SGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDEK 123 (395)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHHH
T ss_pred cCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchHH
Confidence 34568888887 4578 7999997654 23344666658878777665554
No 111
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=47.42 E-value=9.4 Score=43.19 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=20.8
Q ss_pred CCCccchhHHHhhHHHHHHHHHHHHcC-Cccceecc
Q 000999 51 ATGLPHYGHILAGTIKDIVTRYQSMMG-FHVTRRFG 85 (1193)
Q Consensus 51 ~nG~lH~GH~~~~~ikDi~~Ry~rm~G-~~V~~~~G 85 (1193)
|||.||+||.++.+.+ +.+++. .| |++.+..|
T Consensus 10 PTg~lHlGh~~g~l~~--~~~lQ~-~G~~~~~~~Ia 42 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQ--WVAIGE-KLGRDAFFCIV 42 (337)
T ss_dssp SCSCCBHHHHHTHHHH--HHHHHH-HHGGGEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHHHHh-cCCCCEEEEEe
Confidence 4588999999865422 334444 37 88766555
No 112
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=46.54 E-value=12 Score=42.49 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=27.4
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHH
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLP 92 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlp 92 (1193)
+|.|.+ |||.||+||.++.+. -+.+++ ..|++|.+..| |-|++=
T Consensus 15 v~~G~~-PTG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~Ia-D~ha~t 58 (340)
T 2g36_A 15 ILSGMR-PTGKLHIGHLVGALE--NWVKLQ-EEGNECFYFVA-DWHALT 58 (340)
T ss_dssp EEEEEC-CCSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEEC-HHHHHH
T ss_pred EEEeeC-CCCcccHHhHHHHHH--HHHHHH-HCCCCEEEEEe-cceeec
Confidence 344442 358999999987432 233343 35999888774 555653
No 113
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=46.50 E-value=12 Score=43.69 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCCCC-CccchhHHHhhHHHHHHHHHHHHcCCccceecccchhh
Q 000999 39 QPEYVFYDGPPFAT-GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG 90 (1193)
Q Consensus 39 ~~~f~~~~gPP~~n-G~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hG 90 (1193)
++++.+|.|.= || |.||+||.+.... ..|++..-|+++.+..| |-|+
T Consensus 100 g~~~~vy~G~d-PTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta 147 (432)
T 2ip1_A 100 GKPFFLYTGRG-PSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEK 147 (432)
T ss_dssp TCCCEEEEEEC-CCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHH
T ss_pred CCCeEEEEeec-CCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-cccc
Confidence 45678888872 34 8999999986542 23455546999888887 4444
No 114
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=42.41 E-value=15 Score=42.88 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=22.5
Q ss_pred CHHHHHHHHhCCcEEEceEEeeCCcEEEE
Q 000999 958 SQEDILAFEKSGEVTIATHCLQLADIKVV 986 (1193)
Q Consensus 958 ~~~~~~~~~~~g~~~~~g~~l~~~~v~i~ 986 (1193)
+..+.++++++|.+.|+|..++..+..+.
T Consensus 383 S~~earr~i~~ggv~vn~~~v~d~~~~~~ 411 (432)
T 1h3f_A 383 SNAEARRLIQNRGLRLDGEVLTDPMLQVD 411 (432)
T ss_dssp SHHHHHHHHHTTCEEETTEECCCTTCEEE
T ss_pred cHHHHHHHHHhCCEEECCEEecCccceec
Confidence 55678889999999999988876665443
No 115
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=41.48 E-value=15 Score=42.22 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=48.2
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~ 120 (1193)
++.+|.|. -|||.||+||.+.-+.+ +.+++. .|+++.+..|= -|++=.. ..|.+ .+.
T Consensus 33 ~~~vy~G~-~PTg~lHlG~yl~~l~~--~~~lQ~-~G~~~~~~iaD-~ha~~~~-----~~g~~-------------~e~ 89 (375)
T 2cyc_A 33 PLQHYIGF-EISGYIHLGTGLMAGAK--IADFQK-AGIKTRVFLAD-WHSWIND-----KLGGD-------------LEV 89 (375)
T ss_dssp CCBEEEEE-CCCSCCBHHHHHHHHHH--HHHHHH-TTCBCEEEECH-HHHHHTT-----GGGGC-------------HHH
T ss_pred CcEEEeCC-CCCCCcCchHHHHHHHH--HHHHHH-CCCcEEEEecC-cEEEcCC-----CCCCC-------------HHH
Confidence 45677775 34589999995553332 445555 48988776653 3333211 01111 124
Q ss_pred HHHHH-HHHHHHHHHHHHHhCCcccccCc
Q 000999 121 CRSIV-TRYVEEWEQIITRTGRWIDFRND 148 (1193)
Q Consensus 121 c~~~~-~~~~~~~~~~~~~lG~~iD~~~~ 148 (1193)
+++.+ .++...+..++..+| +|-++.
T Consensus 90 i~~~~~~~~~~~~~~~~la~G--~dp~k~ 116 (375)
T 2cyc_A 90 IQEVALKYFKVGMEKSIEVMG--GDPKKV 116 (375)
T ss_dssp HHHHHHHTHHHHHHHHHHHTT--CCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCccce
Confidence 55566 556666668889999 665543
No 116
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=41.30 E-value=15 Score=42.37 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 40 PEYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
++..+|.|. -|||. ||+||.+. +. .+.+++. .||++.+..|
T Consensus 63 ~~~~vy~G~-dPTg~sLHlGhlv~-l~--~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 63 RRIGAYVGI-DPTAPSLHVGHLLP-LM--PLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCCEEEEEE-CCCSSSCBGGGHHH-HH--HHHHHHH-HTCEEEEEEC
T ss_pred CCCEEEEee-cCCCCCccHHHHHH-HH--HHHHHHH-cCCcEEEEEc
Confidence 345677776 24588 99999883 32 2455554 4999877765
No 117
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=40.14 E-value=16 Score=41.07 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=28.0
Q ss_pred cEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 41 EYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
++.+|.|. -|||. ||+||.+. +. .+.+++. .|+++.+..| |-|++
T Consensus 33 ~~~vy~G~-~PTg~slHlGh~l~-l~--~~~~lQ~-~g~~~~~~i~-D~~a~ 78 (322)
T 2yxn_A 33 PIALVCGF-DPTADSLHLGHLVP-LL--CLKRFQQ-AGHKPVALVG-GATGL 78 (322)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH-HH--HHHHHHH-TTCEEEEEEC-TTGGG
T ss_pred CCEEEEee-cCCCCcccHHHHHH-HH--HHHHHHH-cCCcEEEEEc-cceee
Confidence 45667776 24588 99999873 22 2445553 4898877666 33443
No 118
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=39.51 E-value=9.4 Score=43.36 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
..+|.|.= |||.||+||.++.+.+ +.+++. |+++.+..|
T Consensus 5 ~~i~sG~~-PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia 43 (348)
T 2yy5_A 5 KRALTGIQ-ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA 43 (348)
T ss_dssp CEEEEEEC-CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC
T ss_pred eEEEEeeC-CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc
Confidence 35666651 3599999998865532 334554 788766555
No 119
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=38.29 E-value=8.9 Score=43.42 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=26.2
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
.+|.|. -|||.||+||.++.+-+ +.+++. |+++.+..+ |-|++
T Consensus 8 ~v~sG~-~PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia-D~ha~ 50 (341)
T 3sz3_A 8 IVLSGV-QPSGELSIGNYLGALRQ--WQQMQD--DYDCQYCVV-DLHAI 50 (341)
T ss_dssp EEEEEE-CSSSCCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHT
T ss_pred EEEeCc-CCCCcccHHHHHHHHHH--HHHHHh--cCeEEEEEe-cceeE
Confidence 455654 35699999999864422 234444 577766655 55553
No 120
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=36.99 E-value=20 Score=40.86 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 41 EYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
++.+|.|. -|||. ||+|| +.-+.+ +.+++. .|+++.+..|
T Consensus 46 ~~~vy~G~-~PTg~sLHLGh-l~~l~~--~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 46 PQTIYCGF-DPTADSLHVGH-LLALLG--LFHLQR-AGHNVIALVG 86 (356)
T ss_dssp CCEEEEEE-CCSSSSCBHHH-HHHHHH--HHHHHH-TTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHH-HHHHHH--HHHHHH-CCCcEEEEEc
Confidence 36677776 24586 99999 444433 555554 5999877766
No 121
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=35.93 E-value=21 Score=41.58 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=36.0
Q ss_pred HHHHHHhcCCccccccc---CC--CCCcEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 19 ILEFWNSIDAFKTQLDR---TR--CQPEYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 19 ~~~~W~~~~~f~~~~~~---~~--~~~~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
+++...+.++++..... ++ .+.++.+|.|. -|||. ||+||.+. +. .+.|++. .||++.+..|=
T Consensus 5 ~~~~l~~Rg~~~~~~~~~~L~~~L~~~~~~iy~G~-dPTg~sLHlGh~v~-l~--~~~~lQ~-~G~~~~~lIgd 73 (420)
T 1jil_A 5 LIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGA-DPTADSLHIGHLLP-FL--TLRRFQE-HGHRPIVLIGG 73 (420)
T ss_dssp HHHHHHHTTCCCCBSCHHHHHHHHHHSCCEEEEEE-CCSSSSCBHHHHHH-HH--HHHHHHH-TTCEEEEEECT
T ss_pred HHHHHHHcCchhhcCCHHHHHHHHcCCCCEEEEee-CCCCCCccHHHHHH-HH--HHHHHHH-CCCcEEEEEcC
Confidence 44455566666633210 00 12345677776 23577 99999873 22 2445554 59998887763
No 122
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=35.39 E-value=19 Score=41.98 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=28.4
Q ss_pred cEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 41 EYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
++.+|.|. -|||. ||+||. .-+.+ +.+++. .||++.+..| |-||+
T Consensus 32 ~~~iy~G~-dPTg~sLHLGhl-v~l~~--l~~lQ~-~G~~~i~lIg-D~ta~ 77 (432)
T 2jan_A 32 PMTVYAGF-DPTAPSLHAGHL-VPLLT--LRRFQR-AGHRPIVLAG-GATGM 77 (432)
T ss_dssp CCEEEEEE-CCSSSSCBGGGH-HHHHH--HHHHHH-TTCEEEEEEC-HHHHH
T ss_pred CCEEEEee-CCCCCCcCHHHH-HHHHH--HHHHHH-CCCcEEEEEc-CcEEE
Confidence 45677776 24584 999994 43332 555554 5999888776 34443
No 123
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=33.96 E-value=30 Score=40.48 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
.++++.+|.|.==..|.||+||.+.... ..+++..-|+++.+..|=
T Consensus 105 ~~~~~~vy~G~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD 150 (437)
T 1r6u_A 105 NKKPFYLYTGRGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 150 (437)
T ss_dssp TTCCEEEEEEECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred cCCCcEEEEcccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 3557888998732238999999997542 234555469887776664
No 124
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=32.69 E-value=67 Score=37.61 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
.+.+|.+|.|.=-..|.||+||..... ...|++..-|..|....|
T Consensus 88 ~g~p~~vytG~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig 132 (451)
T 3foc_A 88 KGHPIYIYTGRGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT 132 (451)
T ss_dssp TTCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC
T ss_pred cCCCeEEEecCCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee
Confidence 346788999983223899999977643 233456655777777655
No 125
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=31.99 E-value=13 Score=42.21 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=25.7
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
.+|.|. -|||.||+||.++.+-+ +.++ +.++++.+..+ |-|.+
T Consensus 17 ~i~sG~-~PTG~lHLGh~vg~l~~--~~~l--Q~~~~~~~~ia-D~hA~ 59 (346)
T 3n9i_A 17 IVFSGA-QPSGELTIGNYMGALRQ--WVQM--QDDYDCIYCIV-DLHAI 59 (346)
T ss_dssp EEEEEE-CSCSCCBHHHHHHTHHH--HHTT--TTTSEEEEEEC-HHHHT
T ss_pred EEEECc-CCCCcccHHHHHHHHHH--HHHH--HhhCcEEEEEe-cceee
Confidence 456664 34699999998865421 1222 24788766554 55553
No 126
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=31.39 E-value=33 Score=40.58 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
++++.+|.|.==..|.||+||.+.... ..+++..-|++|.+..|=
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D 197 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 197 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 457888998732238999999997552 224555469987776664
No 127
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=27.35 E-value=37 Score=39.48 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=26.9
Q ss_pred cEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 41 EYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
+..+|.|. -|||. ||+||.+. +. .+.|++. .||++.+..|=
T Consensus 30 ~~~iy~G~-dPTg~sLHlGh~v~-l~--~l~~lQ~-~G~~~i~lIgd 71 (419)
T 2ts1_A 30 RVTLYCGF-DPTADSLHIGHLAT-IL--TMRRFQQ-AGHRPIALVGG 71 (419)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHHH-HH--HHHHHHH-TTCEEEEEECT
T ss_pred CCEEEEee-CCCCCCccHHHHHH-HH--HHHHHHH-CCCcEEEEEcC
Confidence 35677776 23577 99999873 22 2445554 59998887763
No 128
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=20.19 E-value=35 Score=32.20 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=56.5
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHH-------------HHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 109 VFQMGIDKYNEACRSIVTRYVEEW-------------EQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 109 ~~~~g~~~f~~~c~~~~~~~~~~~-------------~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
+..+.-++..++||+++.+-.... +..+++||+ | ..++. .+--.+.++||+-+
T Consensus 14 l~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGi--d------gvda~------~iVd~~~e~gLLgk 79 (121)
T 3kp1_E 14 LANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGF--S------SLEAK------AIVDKTMDRGLMGK 79 (121)
T ss_dssp GTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTC--C------HHHHH------HHHHHHHHTTCGGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCC--C------ccchH------HHHHHHHHcccccc
Confidence 445777888888888888777655 346788994 2 23332 27888999999999
Q ss_pred eceeccccCCCCCccCccccc
Q 000999 176 GFKVMPYSTGCKTPLSNFEAG 196 (1193)
Q Consensus 176 ~~~~v~wcp~~~T~Ls~~Ev~ 196 (1193)
|--.+-|--.++|.+|-.|+.
T Consensus 80 GAa~~v~~a~~e~g~s~qeaa 100 (121)
T 3kp1_E 80 GAGHIVYKIAKEKNISVREAG 100 (121)
T ss_dssp CHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHH
Confidence 999888888899999988874
Done!