RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 000999
(1193 letters)
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 2335 bits (6052), Expect = 0.0
Identities = 933/1187 (78%), Positives = 1028/1187 (86%), Gaps = 32/1187 (2%)
Query: 3 EVSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILA 62
EV EGKDFSF ++EEKIL W+ IDAFKTQL RT PEY+FYDGPPFATGLPHYGHILA
Sbjct: 1 EVCEGKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILA 60
Query: 63 GTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122
GTIKDIVTRYQSM G HVTRRFGWDCHGLPVE EIDK LGIKRRDDV +MGIDKYNE CR
Sbjct: 61 GTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECR 120
Query: 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPY 182
SIVTRY +EWE+ +TRTGRWIDF NDYKTMD KFMESVWWVF QL+EKGLVYKGFKVMPY
Sbjct: 121 SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPY 180
Query: 183 STGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNA 242
ST CKTPLSNFEAG NYKDV DP +MVSFPIVGDP+ A+FVAWTTTPWTLPSNLALCVN
Sbjct: 181 STACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNP 240
Query: 243 NFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQD 302
NFTYVKVRNKYTGK+Y+VAESRLSALP+ KPKS KK S +
Sbjct: 241 NFTYVKVRNKYTGKVYIVAESRLSALPTAKPKS----------KKGSKPENAA------- 283
Query: 303 GELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTG 362
E YE L G+ LVGKKYEPLFDYF EFSD AFRV+AD+YVT DSGTG
Sbjct: 284 ----------EGYEVL-AKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTG 332
Query: 363 IVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEA 422
+VHCAPAFGEDDYRVC+ N II KG NL V VDDDGCFT K+TDFSGRYVKDADKDII A
Sbjct: 333 VVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAA 392
Query: 423 LKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYV 482
+KAKGRLVK+GS+THSYPFCWRSDTPLIYRAVPSWFV+VE +K++LL+NNKQTYWVPDYV
Sbjct: 393 IKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYV 452
Query: 483 KEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHR 542
KEKRFHNWLENARDWAVSRSRFWGTPLP+W S+DGEE++V+ S+ +LEKLSG K+ DLHR
Sbjct: 453 KEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHR 512
Query: 543 HNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIA 602
H IDHITIPSSRGPEFG+LRR++DVFDCWFESGSMPYAYIHYPFEN E FE NFP F+A
Sbjct: 513 HFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVA 572
Query: 603 EGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDY 662
EGLDQTRGWFYTLMVLSTALF KPAF+NLICNGLVLAEDGKKMSK LKNYP P EVI+ Y
Sbjct: 573 EGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKY 632
Query: 663 GADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPF 722
GADALRLYLINSPVVRAE LRFK++GVF VVKDVFLPWYNAYRFLVQNAKRLE+EGGAPF
Sbjct: 633 GADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPF 692
Query: 723 IPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRF 782
+PLDLA LQ S+NVLD+WINSATQSLV FVR+EM YRLYTVVPYL+KF+DNLTNIYVRF
Sbjct: 693 VPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRF 752
Query: 783 NRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHF 842
NRKRLKGR+GE+DCR ALSTLYNVLLTSCKVMAPFTPFFTE LYQN+RKV GSEESIH+
Sbjct: 753 NRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHY 812
Query: 843 CSFPKE-EGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADFLDDI 901
CSFP+ EG+ DERIEQSV RM T+I+LARNIRERHNKPLK+PL+EM+VVHPDA+FLDDI
Sbjct: 813 CSFPQVDEGELDERIEQSVSRMQTVIELARNIRERHNKPLKTPLKEMVVVHPDAEFLDDI 872
Query: 902 AGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQED 961
GKLKEYVLEELNVRSLVPCND LKYASLRAEP+FSVLGKRLG+SMG+VAKEVKAMSQ+D
Sbjct: 873 TGKLKEYVLEELNVRSLVPCNDPLKYASLRAEPNFSVLGKRLGKSMGLVAKEVKAMSQDD 932
Query: 962 ILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESLF 1021
IL FEK+GEVTIA H L+ DIKVVR+FKRP+GV++++IDAAGDGDVLVILDLR DESL
Sbjct: 933 ILEFEKAGEVTIAGHTLKAGDIKVVRDFKRPEGVSKEDIDAAGDGDVLVILDLRVDESLL 992
Query: 1022 EAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDE-DKSVSQQVLNSQEHYIRDAIGSP 1080
EAGVAREVVNRIQKLRKK LEPTD VEV+FESLDE D+S QVL SQ YIR+++GSP
Sbjct: 993 EAGVAREVVNRIQKLRKKAGLEPTDKVEVFFESLDEVDESALSQVLKSQAQYIRESLGSP 1052
Query: 1081 LLPSSTLPSHAVIIGEESFDGISNLSFKISLTRPALVFNSDSILALYSGNTMFLQGLQMY 1140
LLPSS +PSHAV+I EESF G+S LSFKISL RPAL FN D++LAL SG+ +G++
Sbjct: 1053 LLPSSMMPSHAVVIAEESFHGVSGLSFKISLARPALAFNEDALLALCSGDEELAEGVEAV 1112
Query: 1141 LLSRDHSNLKSEFQLGNGKIMVDCIENQPPVNLVLGEHVFLSVGDYY 1187
LLSRDHSNLKSEFQ G K + C EN P V++VLG+H LSV D
Sbjct: 1113 LLSRDHSNLKSEFQAGKIK--LSCRENGPEVDVVLGKHFHLSVSDSV 1157
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 1229 bits (3183), Expect = 0.0
Identities = 439/1079 (40%), Positives = 611/1079 (56%), Gaps = 145/1079 (13%)
Query: 1 MEEVSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHI 60
EV DF EE++L+FW D F+ ++ PE+VFYDGPP A GLPHYGH+
Sbjct: 4 YPEVDSQPDFP--ALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHL 61
Query: 61 LAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120
L TIKD+V RY++M G+ V RR GWD HGLPVE E++K LGI + D+ + GI+K+NE
Sbjct: 62 LTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEK 121
Query: 121 CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVM 180
CR V RY +EWE+ R GRW+DF N YKT+D ++MESVWW QLY+KGL+YKG++V+
Sbjct: 122 CRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVV 181
Query: 181 PYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCV 240
PY C+TPLSN E Q YKDV DP + V F + G+ E +AWTTTPWTLPSNLAL V
Sbjct: 182 PYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGE-ENEYLLAWTTTPWTLPSNLALAV 240
Query: 241 NANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKA 300
+ + YVKV G++Y++AE+ L + E
Sbjct: 241 HPDIDYVKVEGG--GEVYILAEALLEKVLKED---------------------------- 270
Query: 301 QDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSG 360
YE + F G+ L G +YEP F YF + AFRV+ ++VT++ G
Sbjct: 271 --------------YEVVET-FKGSELEGLEYEPPFPYFADE-KNAFRVVLADFVTTEDG 314
Query: 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDII 420
TGIVH APAFGEDD+ V + + ++ VDDDG FT ++ D++G++VKDADK+II
Sbjct: 315 TGIVHIAPAFGEDDFEVGKKYGLP-----VVCPVDDDGRFTEEVPDYAGKFVKDADKEII 369
Query: 421 EALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPD 480
LK +G L K + HSYP CWR DTPLIY A SWF+RV +K+++L+ N++ W P+
Sbjct: 370 RDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPE 429
Query: 481 YVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGE--KIF 538
++K+ RF WLENARDW +SR+R+WGTPLP+W ED I V+ S+++LE+L GE +
Sbjct: 430 HIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPI 489
Query: 539 DLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPG 598
DLHR +D +T+P G RR+ DV D WF+SGSMPYA +HYPFEN E FE +FP
Sbjct: 490 DLHRPYVDEVTLPCPDGGTM---RRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPA 546
Query: 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEV 658
FI EG+DQTRGWFYTL+ LSTALF +P ++N++ +G VL EDG+KMSK L NY P EV
Sbjct: 547 DFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEV 606
Query: 659 INDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEG 718
+ YGADALR YL++S E LRF +DGV VV+ L +N Y F V A ++G
Sbjct: 607 FDKYGADALRWYLLSSSA-PWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYA---NLDG 662
Query: 719 GAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNI 778
F S N LD+WI S SLV V + ++ Y + + F+D+L+N
Sbjct: 663 ---FDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNW 719
Query: 779 YVRFNRKRL-KGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSE 837
Y+R +R+R K D A +TLY VL T ++ APFTPF E +YQN+ +
Sbjct: 720 YIRRSRRRFWKEEDDPDK-LAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL--TREDAP 776
Query: 838 ESIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDAD 896
ES+H +P+ +E DE +E+++ + I+ L R+ R++ ++ PL ++ V +
Sbjct: 777 ESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSARKKAGIKVRQPLSKITVAEDEE- 835
Query: 897 FLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKA 956
+ + + ++ + +ELNV KEV
Sbjct: 836 -VAEALERYEDLIKDELNV------------------------------------KEVP- 857
Query: 957 MSQEDILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRP 1016
EV I + AA +G V LD
Sbjct: 858 ------------EEVEIEE-------------------EAPEGYAAAEEGGGTVALDTEL 886
Query: 1017 DESLFEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRD 1075
E L G+ARE++ RIQ++RK+ L+ +D + VY + +E + + E YI++
Sbjct: 887 TEELEAEGLARELIRRIQEMRKEAGLDVSDRIRVYISAPEEVA----EAVEKHEDYIKE 941
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 1061 bits (2746), Expect = 0.0
Identities = 493/1134 (43%), Positives = 691/1134 (60%), Gaps = 121/1134 (10%)
Query: 15 EEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQS 74
EEEK+L++W SIDAF T + + Y+FYDGPPFATGLPHYGH+LAG IKD VTRY
Sbjct: 77 EEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFY 136
Query: 75 MMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQ 134
GF V R+FGWDCHGLP+E EI+K I +++D+ +MGID YNE CR IV +Y EW +
Sbjct: 137 QCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVK 196
Query: 135 IITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFE 194
+ R GRWIDF+NDYKTMD FMESVWWVF++LY+ VYK FKVMPYS C TP+SNFE
Sbjct: 197 TVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFE 256
Query: 195 AGQNYKDVPDPEIMVSFPIVGD-------------------------------------- 216
NYKD PDP I++SF + D
Sbjct: 257 LNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNN 316
Query: 217 -------PEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALP 269
+ + +AWTTTPWTLPSNLALCVN +FTY+++ + + ++ +V E RL +
Sbjct: 317 STNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIM 376
Query: 270 SEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVG 329
E L + E+ K+ F G L G
Sbjct: 377 KE---------------------------------LKWNVED----LKIVNRFKGKELKG 399
Query: 330 KKYEPLFDYFKE---FSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINK 386
+Y+PLF F E F + A++++AD++VT D+GTGIVHCAP +GEDD+RVC +N +I+
Sbjct: 400 LRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDP 459
Query: 387 GENLIV-AVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRS 445
+N+ + +D +G FT ++ + Y+K+AD I + LK + RL+ ++ HSYPFCWRS
Sbjct: 460 EKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRS 519
Query: 446 DTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFW 505
DTPLIYRA+P+WF+RV +L+ NN+ TYW+P ++KEK+FHNW+++A+DW +SR+R+W
Sbjct: 520 DTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYW 579
Query: 506 GTPLPVWTSEDGEEIIVVDSVDKLEKLSGEK-IFDLHRHNIDHITIPSSRGPEFGLLRRI 564
GTP+P+W E E +I V+S+ LE+LSG K I DLHRH IDHI I + +G + L+RI
Sbjct: 580 GTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRI 639
Query: 565 EDVFDCWFESGSMPYAYIHYPFENA-EHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALF 623
+VFDCWFESGSMPYA +HYPF E F FP FIAEGLDQTRGWFYTL+V+ST LF
Sbjct: 640 PEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLF 699
Query: 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLR 683
K F+NLICNGLVLA DGKKMSK+LKNYP P+ +++ YGAD+LRLYLINS VRAE L+
Sbjct: 700 DKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLK 759
Query: 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINS 743
F++ GV VVK LP+Y+++RF Q R E F+ + + K+ N++DQWI S
Sbjct: 760 FQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFL-FNTDYIYKNDNIMDQWIFS 818
Query: 744 ATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTL 803
+ QSL V EM+ Y+LY V+P LL+F++NLTN Y+R NR R++G GE++C +L T
Sbjct: 819 SVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTT 878
Query: 804 YNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSE---------------------ESIHF 842
Y L +MAPFTPF TE +YQ +R+V S +E +S+HF
Sbjct: 879 YRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHF 938
Query: 843 CSFPKEEGKR--DERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADFLDD 900
P+ + K D I + + +M +I L R +RER K PL+ + ++HP+ + +
Sbjct: 939 IMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASKKPLKSITILHPNESYFKN 998
Query: 901 IAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQE 960
++ Y+ EELNV + V C++ A P++ LG +LG ++ V ++K M E
Sbjct: 999 FD-QISNYIKEELNVLN-VECSNDTSCLDFSAIPNYKTLGVKLGYNLKKVQNKIKNMDSE 1056
Query: 961 DILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESL 1020
I +++ G++T+ L+ DI + + D + V +++D D+ L
Sbjct: 1057 SIKLYQQEGKITLDNVTLEGDDIII----QMKPNFQNDNTDIISNNYVTILMDFTTDQQL 1112
Query: 1021 FEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIR 1074
ARE+ N IQK+RK ++L V+++ D+ ++ +++ E YI+
Sbjct: 1113 ENMASARELCNHIQKMRKNLSLNQNSPVKMHVYIADD--TLRNNMVSEME-YIK 1163
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 1010 bits (2613), Expect = 0.0
Identities = 372/1040 (35%), Positives = 551/1040 (52%), Gaps = 136/1040 (13%)
Query: 10 FSFSREEEKILEFWNSIDAF-KTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDI 68
+ ++E KIL+FW D + K + +R + +P++V +DGPP+A G H GH L +KDI
Sbjct: 18 ANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDI 77
Query: 69 VTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRY 128
+ RY++M G+ V GWDCHGLP+E +++K LGI ++D + G++++ E CR
Sbjct: 78 IVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKD-IESFGVEEFREKCREFALEQ 136
Query: 129 VEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKT 188
V+E ++ R G W D+ N YKTMD + ESVWW F +LYEKGL+Y+G+K +P+S C+T
Sbjct: 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCET 196
Query: 189 PLSNFEAGQNYKDVPDPEIMVSFPIVGD--PEKAAFVAWTTTPWTLPSNLALCVNANFTY 246
L+ E Y DV DP I V FP+ + E A V WTTTPWTLP+NLA+ V+ + Y
Sbjct: 197 ALAEAEV--EYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDY 254
Query: 247 VKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELA 306
V V G+ ++A++ + ++ ++K
Sbjct: 255 VLVE--VNGEKLILAKALVESV-AKKAGV------------------------------- 280
Query: 307 RSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHC 366
E YE L F G+ L G +YE F F D AF VI ++VT D GTG+VH
Sbjct: 281 ------EDYEVLET-FKGSELEGLRYEHPFYDFVY--DRAFPVILGDHVTLDDGTGLVHT 331
Query: 367 APAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAK 426
AP GE+DY V + ++ ++ VDD+G +T + + G +VKDA+K IIE LK K
Sbjct: 332 APGHGEEDYEVGKKYGLLE----VLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEK 387
Query: 427 GRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKR 486
G L+K+ + HSYP CWR+ TPLIYRA P WFV V+ L++K+L + WVPD+ K R
Sbjct: 388 GNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGK-NR 446
Query: 487 FHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIF-----DLH 541
F N +EN DW +SR R+WG P+PVW ++ EI+V+ ++LE+L G+ + D H
Sbjct: 447 FGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVIT--EELEELVGQLVEEKGIDDWH 504
Query: 542 RHNIDHITIPSSR-GPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQF 600
R +ID + P G E+ RR+ DV D WF+SGS PYA +H P EN F F
Sbjct: 505 RPDIDELLPPCPEDGKEY---RRVPDVLDVWFDSGSTPYAVLH-PREN-LKFP-ALFADF 558
Query: 601 IAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN 660
EG DQTRGWFY+ ++ STALFG+ ++N++ +G VL E G+KMSK L N P +VI+
Sbjct: 559 YLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVID 618
Query: 661 DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGA 720
YGAD LRL++ +S E LRF + + V++V+ N YRFL+ N ++
Sbjct: 619 KYGADILRLWVASSD--YWEDLRFSDEIL-KQVREVYRKIRNTYRFLLGN-----LDD-- 668
Query: 721 PFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIY 779
F P A L + LD+WI S SLV VR+ E Y + VV L+ F+ ++L+N Y
Sbjct: 669 -FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWY 727
Query: 780 VRFNRKRLKGRSGED-DCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEE 838
+ + RL + + D R A +TLY++L +++AP PF E ++QN+ G EE
Sbjct: 728 LDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNL--PGERKEE 785
Query: 839 SIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADF 897
S+H +P+ +E D ++ A R L+ P+ + +
Sbjct: 786 SVHLEDWPEVDEELID-------------VEAALAARWEALLKLRDPVNKAL-------- 824
Query: 898 LDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAM 957
A +L++ + LN + ++ D+ L+ LGK L S VAK ++A+
Sbjct: 825 ---EAARLEKVIGSSLNAKVVIYTEDSELLYKLKPN-----LGKVLITSAVEVAKALEAL 876
Query: 958 SQEDILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPD 1017
+ + V ++ V + E E D
Sbjct: 877 AGAEAEELVDGDGV----------ELTVEK--------AEGE-----KCPRCWHYDTELG 913
Query: 1018 ESLFEAGVAREVVNRIQKLR 1037
E L E G+ R V RIQ++R
Sbjct: 914 EELEEEGLCRRCVRRIQEMR 933
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 933 bits (2414), Expect = 0.0
Identities = 357/908 (39%), Positives = 517/908 (56%), Gaps = 83/908 (9%)
Query: 10 FSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIV 69
+ S+ EEKIL FW D F+ + +PE++F+DGPP+A G H GH L +KDI+
Sbjct: 6 GNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDII 65
Query: 70 TRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYV 129
RY++M GF+VTR+ GWD HGLP+E++++K LGI + ++ + I+++ E CR + +
Sbjct: 66 LRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQI 125
Query: 130 EEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTP 189
EE + R G W D+ N YKTMD + ES WW+F + +EKGL+Y+G K + +S C+T
Sbjct: 126 EEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTA 185
Query: 190 LSNFEAGQN--YKDVPDPEIMVSFPIVGDPEKAA------FVAWTTTPWTLPSNLALCVN 241
L+ E YKDV DP I V FP+ D + + WTTTPWTLPSNLA+ V+
Sbjct: 186 LAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVH 245
Query: 242 ANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQ 301
+F Y V++ + +++A+ + L ++
Sbjct: 246 PDFEYALVQDNTKVEYFILAKKLVEKLYNKA----------------------------- 276
Query: 302 DGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKE-FSDVAFRVIADNYVTSDSG 360
YE + F G+ L G +YE F + A VI ++VT++ G
Sbjct: 277 ----------GSDYEIIKT-FKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDG 325
Query: 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDII 420
TGIVH AP GE+DY + + G ++ VD+ G +T + DF GR+VKDADKDII
Sbjct: 326 TGIVHTAPGHGEEDYEIGKKY-----GLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDII 380
Query: 421 EA-------LKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK 473
+A LK KG L+K +THSYP CWR+ TP+IYRA WF++ + +K+++L+ K
Sbjct: 381 KANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK 440
Query: 474 QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLS 533
+ WVP++ E RF NWLEN DW +SR R+WG P+P+W ED E IVV S+++L +L
Sbjct: 441 KVNWVPEWG-EGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELI 499
Query: 534 GEK-----IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFEN 588
K DLHR +D IT+ S G E+ RR+ DV D WF+SGSMPYA IHYPFEN
Sbjct: 500 ELKGIDAWFEDLHRDFLDKITLKSGDGGEY---RRVPDVLDVWFDSGSMPYASIHYPFEN 556
Query: 589 AEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKK 648
E F+ FP FI EG DQTRGWFY+ + + TALFG+ ++N+I +G L E G+KMSK
Sbjct: 557 -EKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKS 615
Query: 649 LKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLV 708
L N P++VIN YGAD LRLY+ +S E LRF + + VV+ +N YRFL+
Sbjct: 616 LGNVVDPLKVINKYGADILRLYVASS--DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLL 673
Query: 709 QNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYL 768
A ++ F PL + + D+WI S SLV V + +E Y + V+ L
Sbjct: 674 TYAN---LDK---FDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRAL 727
Query: 769 LKFLDN-LTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQ 827
F+ L+N Y+R R RL + ++D R A +TLY LLT +++APF P E +YQ
Sbjct: 728 QDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQ 787
Query: 828 NMRKVGSGSEESIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLR 886
N+ G EES+H +P+ +E DE +E ++ + I++ +R+ NK L+ PL+
Sbjct: 788 NL--PGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLK 845
Query: 887 EMIVVHPD 894
E+++
Sbjct: 846 ELVIGKSL 853
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 790 bits (2042), Expect = 0.0
Identities = 272/669 (40%), Positives = 365/669 (54%), Gaps = 66/669 (9%)
Query: 18 KILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMG 77
+I +FW+ FK L+ + +P + +DGPP ATGL H GH L T+KDIV RY+ M G
Sbjct: 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQG 60
Query: 78 FHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIIT 137
F V GWD HGLP E +++K LGIK + D ++G +K+ E CR Y +E
Sbjct: 61 FDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFK 120
Query: 138 RTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQ 197
R G D+ +Y T+D +VW VF +L++KGL+Y+G K + +S T LS E
Sbjct: 121 RLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEV-- 178
Query: 198 NYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKI 257
YKDV P I V+FP+ + A+ V WTTTPWTLP N A+ VN F YVK+R TG+
Sbjct: 179 EYKDVKGPSIHVAFPLADG-KGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIR--VTGEY 235
Query: 258 YVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEK 317
Y++AE+ L +L +K E E
Sbjct: 236 YILAEALLKSLYKKK---------------------------------------KEDGEI 256
Query: 318 LGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRV 377
L + F G L+GKKY F + +IAD+YV + GTG VH APA GEDDY V
Sbjct: 257 LED-FRGKELIGKKYIHPF------VNREIPIIADDYVDMEFGTGAVHIAPAHGEDDYEV 309
Query: 378 CIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTH 437
+ + I VDDDG + + +F G A K I+E L KG L+K + H
Sbjct: 310 GKRHNL-----EFINPVDDDGTYNEEAPEFQGLKRFKARKKIVELLTEKGLLLKIEPIEH 364
Query: 438 SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDW 497
SYP CWRS TP+IYRA P WFVR++ L E L ++ +VP + EKR+ NWLEN +DW
Sbjct: 365 SYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKW-GEKRYGNWLENIQDW 423
Query: 498 AVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEK---IFDLHRHNIDHITIPSSR 554
+SR R+WG P+P W S+D E+ V S+ +L E+ LHR D +
Sbjct: 424 CISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDAKDLL------ 477
Query: 555 GPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYT 614
G G L + EDV D WF SGS P++ + YPF N F+ FP + EG DQTRGWFY
Sbjct: 478 GKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYR 537
Query: 615 LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
++VL TAL G ++N++ +GLV E G+KMSK L N P++VI+ YGADALRL+L +S
Sbjct: 538 MIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASS 597
Query: 675 PVVRAETLR 683
R
Sbjct: 598 DYGRDINFS 606
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 504 bits (1300), Expect = e-161
Identities = 270/937 (28%), Positives = 426/937 (45%), Gaps = 160/937 (17%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 75
E +IL+ W D ++ + + +P+++ +DGPP+A G H GH L +KDI+ + ++M
Sbjct: 25 EPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTM 84
Query: 76 MGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEW- 132
GF + GWDCHGLP+E +++K LG K + + ++ + CR Y E
Sbjct: 85 SGFDA--PYVPGWDCHGLPIELKVEKKLGKKGKK----LSAAEFRKKCR----EYALEQV 134
Query: 133 ----EQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFK-VMPYSTGCK 187
E R G D+ N Y TMD K+ ++ ++ +KG +YKG K V + C
Sbjct: 135 DIQREDFK-RLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVY-WCPDCG 192
Query: 188 TPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAF-----VAWTTTPWTLPSNLALCVNA 242
+ L+ EA Y D P I V+FP+V AAF V WTTTPWTLP+N A+ V+
Sbjct: 193 SALA--EAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHP 250
Query: 243 NFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQD 302
F YV V + G+ +VA+ + ++ +
Sbjct: 251 EFDYVLV--EVEGEKLIVAKDLVESV--------------------LERFGW-------- 280
Query: 303 GELARSAENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGT 361
E YE L F G L G + P +D D VI ++VT D+GT
Sbjct: 281 ----------EDYEVLAT-FKGKELEGLVAQHPFYDR-----DS--PVILGDHVTLDAGT 322
Query: 362 GIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIE 421
G+VH AP GEDDY V + + ++ VDDDG +T + F+G +V A+ IIE
Sbjct: 323 GLVHTAPGHGEDDYVVGQKYGL-----EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIE 377
Query: 422 ALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVE--TLKEKLLDNNKQTYWVP 479
L+ KG L+K +THSYP CWR+ P+I+RA P WF+ ++ L+E+ L ++ W+P
Sbjct: 378 KLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIP 437
Query: 480 DYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEII----VVDSVDKLEKLSGE 535
+ K R + +EN DW +SR R WG P+P++ ++ E+ +++ V KL + G
Sbjct: 438 AWGK-NRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGI 496
Query: 536 KI-FDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFEN 594
F+L + + E + D+ D WF+SGS A + + E
Sbjct: 497 DAWFEL---DAKELL-----PDEADEYEKETDILDVWFDSGSSHAAVL------EQRPEL 542
Query: 595 NFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPS 654
+P EG DQ RGWF + ++ S A GK ++ ++ +G + G+KMSK L N
Sbjct: 543 GYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVID 602
Query: 655 PVEVINDYGADALRLYLINS------PVVRAETLRFKKDGVFAVVKDVFLPWY----NAY 704
P +VI YGAD LRL++ ++ + D + V + Y N
Sbjct: 603 PQDVIKKYGADILRLWVASTDYSGDVRI---------SDEILKQVAEA----YRRIRNTL 649
Query: 705 RFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTV 764
RFL+ N + F P A + LD+W L + + E Y + V
Sbjct: 650 RFLLGN-----LND---FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKV 701
Query: 765 VPYLLKFLDN-LTNIYVRFNRKRLKGR---SGEDD--CRIALSTLYNVLLTSCKVMAPFT 818
L F L+ Y+ +K R D R A + LY++L + +AP
Sbjct: 702 YQKLHNFCSVDLSAFYLDI----IKDRLYTDAADSLARRSAQTALYHILEALVRWLAPIL 757
Query: 819 PFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKRDERIEQSVLRMMTI-------IDLA 870
F E ++Q + EES+ +P+ E DE + ++ + ++ A
Sbjct: 758 SFTAEEIWQYLPG---EREESVFLEEWPEVPELADDEELLAKWEELLEVRDEVNKALEEA 814
Query: 871 RNIRERHNKPLKSPLREMIVVHPDADFLDDIAGKLKE 907
R K + S L + ++ DA L+ + +L+
Sbjct: 815 RK-----EKVIGSSLEAEVTLYADAALLESLGDELRF 846
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 434 bits (1119), Expect = e-135
Identities = 254/946 (26%), Positives = 410/946 (43%), Gaps = 152/946 (16%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 75
E +I W ID +K ++ + +P++V +DGPP+A G H GH L +KD++ R + M
Sbjct: 30 EPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQM 89
Query: 76 MGFHVTRRFGWDCHGLPVENEIDKTLGIK--RRDDVFQMGIDKYNEACRSIVTRYVEEWE 133
+GF GWDCHGLP+E +I++ K +D+ + + ++ + CR +++
Sbjct: 90 LGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDE---VPVAEFRKECREYALSWIDVQR 146
Query: 134 QIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFK-VMPYSTGCKTPLSN 192
+ R G D+ N Y TMD + F + KG +Y+G K VM +S +T L+
Sbjct: 147 EEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVM-WSVVERTALA- 204
Query: 193 FEAGQNYKDVPDPEIMVSFPIV----GDPEKAAFVAWTTTPWTLPSNLALCVNANFTY-- 246
EA Y D+ I V FP+ V WTTTPWT+P+N A+ + + Y
Sbjct: 205 -EAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGL 263
Query: 247 VKVRN------KYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKA 300
+V G+ VVA++ ++ + K V
Sbjct: 264 YEVTGAENDFWAKPGERLVVADALAESV--------------------AKKAGV------ 297
Query: 301 QDGELARSAENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRV--IADNYVTS 357
ES+E+L +V G L PL F V + ++VT
Sbjct: 298 ------------ESFERLADV-KGEDLEKIVCAHPL----DGLDGYEFEVPVLDGDHVTD 340
Query: 358 DSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFT--------GKITDFSG 409
D+GTG VH AP G +D+ V ++ + V VD+DG +T ++ D G
Sbjct: 341 DAGTGFVHTAPGHGREDFNVWMKYGR----TEIPVTVDEDGFYTENAPGFGGARVIDDEG 396
Query: 410 RYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVE------- 462
+ DA+K +IE L G L+ G L HSYP WRS P+I+R P WF+ ++
Sbjct: 397 KKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGT 456
Query: 463 TLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIV 522
TL+ + LD +T +VP + R +N +E+ DW +SR R WG P+P++ +EDG EI++
Sbjct: 457 TLRSRALDAIDKTRFVPA-AGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDG-EILM 514
Query: 523 VDSVDK--LEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYA 580
+ V+ + E + ++ D+ D WF+SGS +A
Sbjct: 515 DEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNG--EFTKVTDILDVWFDSGST-HA 571
Query: 581 YIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAE 640
++ E+ +P EG DQ RGWF + ++ S G+ ++ ++ +G L E
Sbjct: 572 FV---LEDRPDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDE 626
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW 700
G+KMSK L N SP +VI GAD LRL++ + ++ R K+ + V + +
Sbjct: 627 KGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDY--SDDQRIGKE-ILKQVSETYRKL 683
Query: 701 YNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNV--------LDQWINSATQSLVHFV 752
N R+L+ N LA +V L++++ L V
Sbjct: 684 RNTLRWLLGN----------------LAHFDPGEDVVAYADLPELERYMLHRLNELDGLV 727
Query: 753 RQEMEGYRLYTVVPYLLKFLDN-LTNIYVRFNRKRLKGRSGEDD--C--------RIALS 801
R+ + Y + L+ F++ L+ Y RK D C R A +
Sbjct: 728 REAYDAYDFKRIYKALVNFVNVDLSAFYFDI-RK--------DALYCDAPSSLRRRAAQT 778
Query: 802 TLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSV 860
Y + + K +AP PF E + E S+H FP+ RD+ + +
Sbjct: 779 VFYEIFVRLTKWLAPILPFTAEEAWLYRYPE---EEVSVHLEQFPETPAFWRDDALAEKW 835
Query: 861 LRMMTIIDLARNI--RERHNKPLKSPLREMIVVH-PDADFLDDIAG 903
+ + D+ ER K + S L V+ D + L + G
Sbjct: 836 RKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAALEG 881
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 334 bits (858), Expect = e-105
Identities = 133/285 (46%), Positives = 169/285 (59%), Gaps = 49/285 (17%)
Query: 402 GKITDFSGRYVKDADKDIIEA-LKAKGRLVKTGSLTHSY-PFCWRSDTPLIYRAVPSWFV 459
G D+ Y K D + +E+ +L + G L Y W PLIYRA P WF+
Sbjct: 101 GVWVDWENPY-KTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----PLIYRATPQWFI 155
Query: 460 RVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEE 519
RV +K++LL+ N + W+P++VK RF NWLEN RDW +SR R+WGTP+PVW ED E
Sbjct: 156 RVTKIKDRLLEANDKVNWIPEWVKN-RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGE 214
Query: 520 IIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPY 579
++V RR+ DV D WF+SGSMPY
Sbjct: 215 VLV---------------------------------------RRVPDVLDVWFDSGSMPY 235
Query: 580 AYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLA 639
A +HYPFEN E FE FP FI EG DQTRGWFY+L++LSTALFGK ++N+I +G VL
Sbjct: 236 AQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLD 294
Query: 640 EDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRF 684
EDG+KMSK L NY P EV++ YGADALRL++ +S V AE LRF
Sbjct: 295 EDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSD-VYAEDLRF 338
Score = 262 bits (673), Expect = 5e-79
Identities = 81/143 (56%), Positives = 111/143 (77%)
Query: 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDK 99
PE+VF+DGPP+A GLPHYGH L +KDI+ RY++M G++V RR GWDCHGLP+E +++K
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 100 TLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMES 159
LGI + D+ +MGI ++N CR RYV+E E+ R G W+D+ N YKTMD ++MES
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMES 120
Query: 160 VWWVFAQLYEKGLVYKGFKVMPY 182
VWWVF QL+EKGL+Y+G+KV+P+
Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 341 bits (877), Expect = e-100
Identities = 260/995 (26%), Positives = 412/995 (41%), Gaps = 186/995 (18%)
Query: 11 SFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVT 70
S +RE E I + W +K DR + + +DGPP+A G H GH L +KD +
Sbjct: 5 SVTREPE-IQKLWEENQVYKRVSDRNNGES-FTLHDGPPYANGDLHIGHALNKILKDFIN 62
Query: 71 RYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVE 130
RYQ + G V GWDCHGLP+E ++ ++L + R + + K + V+
Sbjct: 63 RYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKE---LTPIKLRAKAAKFAKKTVD 119
Query: 131 EWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPL 190
+ R G W D+ N Y T+D ++ + VF Q++ G +Y+G K + +S +T L
Sbjct: 120 TQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTAL 179
Query: 191 SNFEAGQNYKDVPDPE------IMVSFPIVGDPEKA----------AFVA-WTTTPWTLP 233
+ EA Y PE I V+FP+V E + +A WTTTPWT+P
Sbjct: 180 A--EAELEY-----PEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMP 232
Query: 234 SNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTK 293
+N A+ VN Y V E + + + PG K+
Sbjct: 233 ANAAVAVNDKLQYS------------VVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFL 280
Query: 294 VSSGKKAQDGELARSAENNESYEKLG------EVFSGAYLVGKKYE-PLFDYFKEFSDVA 346
+ A D L + E K G + F G+ L G +Y PL++ S V
Sbjct: 281 IV----ATD--LVPALE-----AKWGVKLVVLKTFPGSDLEGCRYIHPLYN---RESPV- 325
Query: 347 FRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD 406
VI +Y+T++SGTG+VH AP G++DY ++ G L+ VDD G FT +
Sbjct: 326 --VIGGDYITTESGTGLVHTAPGHGQEDYITGLKY-----GLPLLSPVDDAGKFTEEAGQ 378
Query: 407 FSGRYV-KDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLK 465
FSG V + + ++EAL G L+ + H YP+ WR+ P I+RA WF VE +
Sbjct: 379 FSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFR 438
Query: 466 EKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDS 525
+ LD + W+P E R + DW +SR R WG P+PV+ + +E +
Sbjct: 439 QAALDAIDKVKWIPA-QGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPL---- 493
Query: 526 VDKLEKLSGEKIFDLHRHNIDHIT-IPSSRG-------------PE-----FGLLRRIED 566
++ I H+ I + +G PE + D
Sbjct: 494 --------------MNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTD 539
Query: 567 VFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKP 626
D WF+SGS + ++P EG DQ RGWF + ++ S A GK
Sbjct: 540 TMDVWFDSGSSWAGVL------GSREGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKA 593
Query: 627 AFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND---------YGADALRLY------- 670
+++++ +G VL E G KMSK L N P VI YGAD LRL+
Sbjct: 594 PYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYT 653
Query: 671 ---LINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDL 727
LI +++ + D++ R+L+ N + + P+ L
Sbjct: 654 GDVLIGPQILKQ-------------MSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLP- 699
Query: 728 ATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKF-LDNLTNIYVRFNRKR 786
+D++ +++V+ + + + Y+ + + L +F + +L+N Y+ + R
Sbjct: 700 --------SIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDR 751
Query: 787 LKGRSGEDDCRIALST-LYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHF--- 842
L R + T L LL+ + +AP P E +QN+ GS F
Sbjct: 752 LYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAG 811
Query: 843 --------CSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVH-P 893
SFP E+ + + + +++ ARN K + + L + +H
Sbjct: 812 WPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARN-----GKLIGASLEAKVYLHAS 866
Query: 894 DADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYA 928
DA A +L E D L+
Sbjct: 867 DASL----AARLAELCGASNGA-------DELRRI 890
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 314 bits (807), Expect = 1e-91
Identities = 178/594 (29%), Positives = 272/594 (45%), Gaps = 76/594 (12%)
Query: 327 LVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIIN 385
LVGK+ PL +IAD YV + GTG V PA +DY V
Sbjct: 238 LVGKEVILPLVGR-------EIPIIADEYVDPEFGTGAVKITPAHDFNDYEV-------G 283
Query: 386 KGENL--IVAVDDDGCFTGKI-TDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFC 442
K NL I +D+DG + +F+G +A K I+E L+ +G LVK HS C
Sbjct: 284 KRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHC 343
Query: 443 WRSDTPLIYRAVPSWFVRVETLKEKLLD--NNKQTYWVPDYVKEKRFHNWLENARDWAVS 500
R TP+ WFV+V L +K L+ + + +VP+ + EKR+ +W+EN RDW +S
Sbjct: 344 ERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERM-EKRYEDWMENIRDWCIS 402
Query: 501 RSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGL 560
R +WG +PVW ++ ++V + E+ D
Sbjct: 403 RQLWWGHRIPVWYCKECGNVVVAE----------EEPEDPAAAEKCPKE----------E 442
Query: 561 LRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLST 620
L + EDV D WF S P++ + +P E + +P + G D W +++
Sbjct: 443 LEQDEDVLDTWFSSSLWPFSTLGWP-EETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGL 501
Query: 621 ALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV---- 676
L G+ F+++ +GLV E G+KMSK N P++VI+ YGADALR L +
Sbjct: 502 HLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRD 561
Query: 677 VRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNV 736
+ + R + F K +NA RF++ N L LDL L ++
Sbjct: 562 INFDEKRVEGYRNFL-NKL-----WNATRFVLMNLDDLG------PDDLDLLAL----SL 605
Query: 737 LDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDD 795
D+WI S V V + ++ YR L +F+ ++ + Y+ + RL G GE++
Sbjct: 606 ADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYG--GEEE 663
Query: 796 CRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKRDE 854
R A +TLY VL T +++ PF PF TE ++Q + ESIH S+P+ +E DE
Sbjct: 664 KRAARATLYYVLDTLLRLLHPFMPFITEEIWQKL-----PGTESIHLASWPEVDEELIDE 718
Query: 855 RIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPD-----ADFLDDIAG 903
E+ + II RN+R N +PL+ ++V + DDI G
Sbjct: 719 EAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKG 772
Score = 131 bits (331), Expect = 7e-31
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 21/241 (8%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
K + EEK + W FK + + P + PP TG H GH L T++D
Sbjct: 3 KTYDPKEIEEKWYKKWEESGYFKPDPNEDK--PPFSIDTPPPNVTGSLHMGHALNYTLQD 60
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTL---GIKRRDDVFQMGIDKYNEACRSI 124
I+ RY+ M G++V G D G+ + ++K L GI R D +G +++ + C
Sbjct: 61 ILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHD----LGREEFLKKCW-- 114
Query: 125 VTRYVEEWEQIITRT----GRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVM 180
+ EE I G +D+ + TMD +V F +LYEKGL+Y+G +++
Sbjct: 115 --EWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLV 172
Query: 181 PYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCV 240
+ C+T +S+ E YK+V + +P+ VA TT P TL + A+ V
Sbjct: 173 NWCPKCRTAISDIEV--EYKEVEGKLYYIKYPLADGDG-YLVVA-TTRPETLLGDTAVAV 228
Query: 241 N 241
+
Sbjct: 229 H 229
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 286 bits (735), Expect = 5e-82
Identities = 177/630 (28%), Positives = 284/630 (45%), Gaps = 78/630 (12%)
Query: 327 LVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIIN 385
L+GKK PL +IAD YV + GTG V PA +DY
Sbjct: 239 LIGKKVILPLTGR-------KIPIIADEYVDMEFGTGAVKVTPAHDFNDYEW-------G 284
Query: 386 KGENL--IVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCW 443
K NL I +D+DG + G +A K I+E LK +G LVK TH+ CW
Sbjct: 285 KRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCW 344
Query: 444 RSDTPLIYRAVPSWFVRVETLKEKLLD--NNKQTYWVPDYVKEKRFHNWLENARDWAVSR 501
RS T + WFV+VE L +K L+ + +VP + EKR+ NWL N +DW +SR
Sbjct: 345 RSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRM-EKRYLNWLRNIKDWCISR 403
Query: 502 SRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLL 561
WG +PVW ++ E+ V + ++ GP L
Sbjct: 404 QLIWGHRIPVWYCKECGEVYVAKEEPLPDD-------------------KTNTGPSVEL- 443
Query: 562 RRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGW-FYTLMVLST 620
+ DV D WF S P++ + +P + + + +P + G D W + S
Sbjct: 444 EQDTDVLDTWFSSSLWPFSTLGWP-DETKDLKKFYPTDLLVTGYDIIFFWVARMIF-RSL 501
Query: 621 ALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAE 680
AL G+ F+ + +GLV E G+KMSK L N P++VI YGADALR L + V +
Sbjct: 502 ALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASL-VTPGD 560
Query: 681 TLRFKKDGVFAVVKDVFL-PWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQ 739
+ F V + FL +NA RF++ N L+L+ ++ ++ D+
Sbjct: 561 DINFDWKRVESARN--FLNKLWNASRFVLMNLSD----------DLELSGGEEKLSLADR 608
Query: 740 WINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRI 798
WI S + VR+ ++ YR L +F+ ++ + Y+ + RL + E + +
Sbjct: 609 WILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN-EAEKKA 667
Query: 799 ALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKRDERIE 857
A TLY VL + +++ PF PF TE ++Q+ ++ +SI S+P + DE E
Sbjct: 668 ARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE----GADSIMLQSYPVVDAEFVDEEAE 723
Query: 858 QSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDAD-------FLDDIAGKLKEYVL 910
++ + II RN++ N P +PL ++++++ +A+ DI G +
Sbjct: 724 KAFELLKEIIVSIRNLKAESNIPPNAPL-KVLLIYTEAETAERLKLNAVDIKGAIN---F 779
Query: 911 EELNVRSLVPCNDTLKYASLRAEPDFSVLG 940
E+ +V + A + P F ++
Sbjct: 780 SEV---EVVIEKPEVTEAVVELVPGFEIII 806
Score = 129 bits (327), Expect = 2e-30
Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 17/265 (6%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
KD+ E+K + W FK + +P + PP TG H GH L +I+D
Sbjct: 3 KDYDPHEVEKKWYKKWEKSGFFKPDGNSN--KPPFCIDIPPPNVTGSLHIGHALNWSIQD 60
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKR--RDDVFQMGIDKYNEACRSIV 125
I+ RY+ M G++V G D G+ + +++K LG + + D+ G +++ E
Sbjct: 61 IIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDL---GREEFREKIWEWK 117
Query: 126 TRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTG 185
+ I R G +D+ + TMD ++V F +LYEKGL+Y+G ++ +
Sbjct: 118 EESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPK 177
Query: 186 CKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVN---- 241
T +S+ E YK+V + +P+ + VA TT P T+ + A+ V+
Sbjct: 178 LNTAISDIEV--EYKEVKGKLYYIRYPLANGSKDYLVVA-TTRPETMFGDTAVAVHPEDE 234
Query: 242 --ANFTYVKVRNKYTG-KIYVVAES 263
+ KV TG KI ++A+
Sbjct: 235 RYKHLIGKKVILPLTGRKIPIIADE 259
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 282 bits (723), Expect = 9e-81
Identities = 170/605 (28%), Positives = 264/605 (43%), Gaps = 87/605 (14%)
Query: 327 LVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFG-EDDYRVCIENQII 384
LVGK PLF +V ++AD V D GTG V FG + D E +
Sbjct: 239 LVGKTAIVPLFGV-----EV--PILADPLVDPDFGTGAVMIC-TFGDKTDVTWWRELNL- 289
Query: 385 NKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWR 444
+ +D+DG T +G +++A K I+E LK+ G L K + H+ FC R
Sbjct: 290 ----PTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCER 345
Query: 445 SDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLEN-ARDWAVSRSR 503
DTPL WF++V LKE+LL+ K+ W P++++ R NW+E DW +SR R
Sbjct: 346 CDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHMR-VRLENWIEGLNWDWCISRQR 404
Query: 504 FWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEF----- 558
++GTP+PVW +D I+ D + L +D P+ P
Sbjct: 405 YFGTPIPVWYCKDCGHPILPD-EEDLP--------------VD----PTKDEPPGYKCPQ 445
Query: 559 ---GLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGW-FYT 614
DV D W S P + + + FE FP +G D R W FYT
Sbjct: 446 CGSPGFEGETDVMDTWATSSITPLIVTGWE-RDEDLFEKVFPMDLRPQGHDIIRTWLFYT 504
Query: 615 LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
+ + + L GK ++N++ +G+VL DGKKMSK N +P E++ YGADA+R + ++
Sbjct: 505 I-LRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASA 563
Query: 675 PVVRAETLRFKKDGVFAVVKDVFLP--WYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQK 732
+ F + V + L W NA RF++ + E + PLD L K
Sbjct: 564 RL--GSDTPFDEKQV--KIGRRLLTKLW-NASRFVLHFSADPEPDKAEVLEPLDRWILAK 618
Query: 733 SSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-----DNLTNIYVRFNRKRL 787
L + + AT++ +E Y + + F D+ Y+ + R
Sbjct: 619 ----LAKVVEKATEA--------LENYDFAKALEEIESFFWHVFCDD----YLELVKSRA 662
Query: 788 KGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK 847
G E++ + A TLY VL T +++APF PF TE ++ + S+H S+P+
Sbjct: 663 YGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY------GGSVHRASWPE 716
Query: 848 -EEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDAD-----FLDDI 901
+E DE E+ I+ R + L +PL+++ V P +D+
Sbjct: 717 PDEELIDEEDEELGELAKEILSAVRKYKSEAGLSLNAPLKKVEVYGPADLELLEAAEEDL 776
Query: 902 AGKLK 906
Sbjct: 777 KAAGN 781
Score = 116 bits (292), Expect = 3e-26
Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 21/245 (8%)
Query: 1 MEEVSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHI 60
M E+ K + EEK + W +K D + P Y PP +G H GH+
Sbjct: 3 MPELP--KKYDPEELEEKWQKIWEEEGTYKFDPDERK--PVYSIDTPPPTVSGSLHIGHV 58
Query: 61 LAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120
+ T D + RYQ M G++V GWD +GLP E +++K GI R+DD+ +++ E
Sbjct: 59 FSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGI-RKDDI---SREEFIEL 114
Query: 121 CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWV----FAQLYEKGLVYKG 176
CR + +++ ++ R G +D+ +Y+T+ + F LY+KGL+Y+
Sbjct: 115 CRELTDEDEKKFRELWRRLGLSVDWSLEYQTIS----PEYRRISQKSFLDLYKKGLIYRA 170
Query: 177 FKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNL 236
+ + C+T ++ +A Y++ + FP+ E +A TT P LP+ +
Sbjct: 171 EAPVLWCPRCETAIA--QAEVEYREREGKLNYIKFPVEDGEE--IEIA-TTRPELLPACV 225
Query: 237 ALCVN 241
A+ V+
Sbjct: 226 AVVVH 230
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 257 bits (660), Expect = 2e-79
Identities = 84/189 (44%), Positives = 113/189 (59%), Gaps = 7/189 (3%)
Query: 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINS 743
F + GV VV+ V LP +NAYRF V A + G S NVLD+WI S
Sbjct: 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDA------VASLNVLDRWILS 54
Query: 744 ATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTL 803
SL+ V +EME Y LYT V LL+F+D LTN Y+R NRKR G G+DD A +TL
Sbjct: 55 RLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATL 114
Query: 804 YNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKRDERIEQSVLR 862
Y VLLT ++MAPFTPF TE +YQN+R+ + ES+H +P+ +E DE +E+++
Sbjct: 115 YEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVDESLIDEELEEAMEL 174
Query: 863 MMTIIDLAR 871
+ I++L R
Sbjct: 175 VREIVELGR 183
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 212 bits (543), Expect = 9e-57
Identities = 162/588 (27%), Positives = 246/588 (41%), Gaps = 117/588 (19%)
Query: 349 VIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGE--NL--IVAVDDDGCFTGKI 404
+IAD YV + GTG V PA +D+ V G+ NL I +D+DG
Sbjct: 257 IIADEYVDPEFGTGAVKITPAHDPNDFEV---------GKRHNLPMINIMDEDGTINENP 307
Query: 405 TDFSG--RYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVE 462
++ G R+ +A K I+ L+ G LVK THS RS + WFV+++
Sbjct: 308 GEYQGLDRF--EARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMK 365
Query: 463 TLKEKLLD--NNKQTYWVPD-YVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEE 519
L + L+ N + +VP+ + EK + +W+EN +DW +SR +WG +P W EDGE
Sbjct: 366 PLAKPALEAVENGEIKFVPERW--EKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEV 423
Query: 520 IIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPY 579
V + E + EK LL + EDV D WF S P+
Sbjct: 424 Y-----VGREEPEAREK----------------------ALLTQDEDVLDTWFSSALWPF 456
Query: 580 AYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTA---LF------------- 623
+ + +P E E + +P VL T +F
Sbjct: 457 STLGWP-EKTEDLKRFYPTS-----------------VLVTGFDIIFFWVARMIMMGLHF 498
Query: 624 -GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETL 682
G+ F+++ +GLV E G+KMSK N P+++I+ YGADALR L +
Sbjct: 499 TGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAAL-ASPGRDI 557
Query: 683 RFKKDGV-----FA--VVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSN 735
RF ++ V FA + +NA RF++ N LE + +L
Sbjct: 558 RFDEERVEGYRNFANKL--------WNASRFVLMN---LEGADVGELPDPEELSL----- 601
Query: 736 VLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGED 794
D+WI S V V + ++ YR L +F+ + + Y+ K E
Sbjct: 602 -ADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLEL----AKPVLQEA 656
Query: 795 DCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDE 854
R +TL VL +++ PF PF TE L+Q + G EESI +P+ + DE
Sbjct: 657 AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLA--PLGIEESIMLAPWPEADEAIDE 714
Query: 855 RIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADFLDDIA 902
E + +I RNIR N P L +++ DA+ +
Sbjct: 715 AAEAEFEWLKELITAIRNIRAEMNIPPSKKL-PLLLKGADAEDRARLE 761
Score = 71.7 bits (177), Expect = 2e-12
Identities = 72/264 (27%), Positives = 106/264 (40%), Gaps = 68/264 (25%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFA--------TGLPHYGH 59
K + E K + W FK + PF+ TG H GH
Sbjct: 7 KTYDPKEVEAKWYQKWEEKGYFKPDDN-----------SKKPFSIVIPPPNVTGSLHMGH 55
Query: 60 ILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLP------------VENEIDKTLGIKRRD 107
L T++DI+ RY+ M G++ W LP VE ++ G R D
Sbjct: 56 ALNNTLQDILIRYKRMQGYNTL----W----LPGTDHAGIATQMVVERQLAAE-GKSRHD 106
Query: 108 DVFQMGIDKYNEACRSIVTRYVEEW----EQIIT----RTGRWIDFRNDYKTMDLKFMES 159
+G +K+ E V EW IT R G D+ + TMD ++
Sbjct: 107 ----LGREKFLE--------KVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKA 154
Query: 160 VWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSF--PIVGDP 217
V VF +LYEKGL+Y+G +++ + +T LS+ E YK+V + P+ D
Sbjct: 155 VREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEV--EYKEVKG--KLWHIRYPLA-DG 209
Query: 218 EKAAFVAWTTTPWTLPSNLALCVN 241
VA TT P T+ + A+ VN
Sbjct: 210 SDYLVVA-TTRPETMLGDTAVAVN 232
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 180 bits (458), Expect = 2e-49
Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 21/236 (8%)
Query: 442 CWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTY--WVPDYVKEKRFHNWLENARDWAV 499
C RS + P WFV+V+ L +K L+ K+ +VP+ + EKR+ NWLEN RDW +
Sbjct: 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERM-EKRYENWLENIRDWCI 214
Query: 500 SRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFG 559
SR +WG +P W +DG +V + E + +K
Sbjct: 215 SRQLWWGHRIPAWYCKDGGHWVV----AREEDEAIDKAAPE----------ACVPCGGEE 260
Query: 560 LLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGW-FYTLMVL 618
L ++ EDV D WF S P++ + +P E + + +P + G D W +M
Sbjct: 261 L-KQDEDVLDTWFSSSLWPFSTLGWP-EETKDLKKFYPTSLLVTGHDIIFFWVARMIM-R 317
Query: 619 STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
L GK F+ + +GLV EDG+KMSK L N P++VI+ YGADALR L ++
Sbjct: 318 GLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASA 373
Score = 105 bits (264), Expect = 5e-24
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRD 107
PP TG H GH L TI+DI+ RY+ M G++V G D G+ + ++K LGI+
Sbjct: 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIE-GK 67
Query: 108 DVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167
+G +++ E C + + + R G +D+ +Y TMD +V F +L
Sbjct: 68 TRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRL 127
Query: 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVS 210
YEKGL+Y+ +++ + +T +S+ E DV E ++
Sbjct: 128 YEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDV--IEPLLK 168
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 185 bits (471), Expect = 1e-47
Identities = 140/566 (24%), Positives = 228/566 (40%), Gaps = 57/566 (10%)
Query: 327 LVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIIN 385
L GKK P+ + F VA ++ D GTG V PA +D+ V +
Sbjct: 255 LHGKKVRHPITG--RTFPIVADAILVD----PKFGTGAVKVTPAHDFNDFEVGKRH---- 304
Query: 386 KGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRS 445
G +I + DG T + +G +A K++ L +G C RS
Sbjct: 305 -GLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRS 363
Query: 446 DTPLIYRAVPSWFVRVETLKEKLLDNNKQ--TYWVPDYVKEKRFHNWLENARDWAVSRSR 503
T L W+VR+E L ++ +Q T ++P+ W+ N DW +SR
Sbjct: 364 ATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMA-WMRNIHDWCISRQL 422
Query: 504 FWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRR 563
+WG +P W DG + ++ + + LR+
Sbjct: 423 WWGHQIPAWYCPDGHVTVARETPEACSTCGKAE------------------------LRQ 458
Query: 564 IEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALF 623
EDV D WF SG P++ + +P E + +P + G D W +M++
Sbjct: 459 DEDVLDTWFSSGLWPFSTMGWP-EQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFM 517
Query: 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLR 683
G+ FR + + +V E G+KMSK N P+ + YGADALR L + + ++
Sbjct: 518 GEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLA-ALTAQGRDIK 576
Query: 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPF-IPLDLATLQKSSNVLDQWIN 742
K+ + + +NA RF + N + G P + A D+WI
Sbjct: 577 LAKERI-EGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPA---------DRWIL 626
Query: 743 SATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALS 801
+ Q V+ + +E +R + F+ L + Y+ ++ L E R +
Sbjct: 627 ARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEAR-RSVQA 685
Query: 802 TLYNVLLTSCKVMAPFTPFFTEALYQ--NMRKVGSGSEESIHFCSFPKEEGKRDERIEQS 859
L + L TS +++ PF PF TE L+ + S +S+ +P +G+ DE E +
Sbjct: 686 VLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYP-RKGEADEAAEAA 744
Query: 860 VLRMMTIIDLARNIRERHNKPLKSPL 885
++ IID RNIR P K L
Sbjct: 745 FRPVLGIIDAVRNIRGEMGIPWKVKL 770
Score = 77.7 bits (191), Expect = 3e-14
Identities = 73/256 (28%), Positives = 115/256 (44%), Gaps = 33/256 (12%)
Query: 1 MEEVSE-GKDFSFSREEEKILEFWNSIDAFK-TQLDRTRCQPEYVFYDGPPFATGLPHYG 58
E +E K + E + FW F + DRTR P + PP TG H G
Sbjct: 9 NENRTELAKGYEHREVEARWYPFWQERGYFHGDEHDRTR--PPFSIVLPPPNVTGSLHLG 66
Query: 59 HILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLP----VENEIDKTLGIKRRDDVFQMGI 114
H L T++D++ R++ M GF+ G D G+ VE E+ KT R D +G
Sbjct: 67 HALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHD----LG- 121
Query: 115 DKYNEACRSIVTRYVEEW-EQIITRTGRW-------IDFRNDYKTMDLKFMESVWWVFAQ 166
R V W EQ +R G +D++ + TMD +V VF +
Sbjct: 122 -------REAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVR 174
Query: 167 LYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIM-VSFPIVGDPEKAAFVAW 225
L+E+GL+Y+ K++ + C+T LS+ E +++ E+ ++P+ D VA
Sbjct: 175 LHEEGLIYREKKLINWCPDCRTALSDLEV--EHEEAHQGELWSFAYPLA-DGSGEIVVA- 230
Query: 226 TTTPWTLPSNLALCVN 241
TT P T+ + A+ V+
Sbjct: 231 TTRPETMLGDTAVAVH 246
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 163 bits (414), Expect = 2e-44
Identities = 77/230 (33%), Positives = 102/230 (44%), Gaps = 62/230 (26%)
Query: 449 LIY------RAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRS 502
LIY R WF + KEKLL ++ VP++VK R WLE+ DWA+SR
Sbjct: 128 LIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVK-NRMEAWLESLLDWAISRQ 186
Query: 503 RFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLR 562
R+WGTP +P
Sbjct: 187 RYWGTP-----------------------------------------LP----------- 194
Query: 563 RIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTAL 622
EDVFD WF+SG P + YP E F++++P + G D RGW + + AL
Sbjct: 195 --EDVFDVWFDSGIGPLGSLGYPEEKEW-FKDSYPADWHLIGKDILRGWANFWITMLVAL 251
Query: 623 FGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672
FG+ +NL+ +G VL E G+KMSK N P +V+ YGADALR YL
Sbjct: 252 FGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLT 301
Score = 131 bits (332), Expect = 1e-33
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTL 101
+ PP+A G H GH L I D + RY+ M G+ V GWD HGLP+E + ++
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG 61
Query: 102 GIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVW 161
G K++ I+++ E + V E ++ R G D+ ++Y T + ++ ++V
Sbjct: 62 GRKKKTIW----IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVE 117
Query: 162 WVFAQLYEKGLVYKGFKV 179
+F++LYEKGL+Y+G
Sbjct: 118 LIFSRLYEKGLIYRGTHP 135
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 151 bits (383), Expect = 5e-37
Identities = 148/617 (23%), Positives = 242/617 (39%), Gaps = 82/617 (13%)
Query: 342 FSDVAFRVIAD-NYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENL--IVAVDDDG 398
D +IAD V + GTG V PA +DY I K NL I DG
Sbjct: 293 IPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYE-------IAKRHNLPFINIFTLDG 345
Query: 399 CFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWF 458
+F+G + D + I E LK G L P C RS + +P W+
Sbjct: 346 KINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWY 405
Query: 459 VRVETLKEKLLDN--NKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVW---- 512
V + + ++ ++ N + +P + +H WLEN +DW +SR +WG +P +
Sbjct: 406 VNCKDMAKRAVEAVRNGELKIIPSSHENVWYH-WLENIQDWCISRQLWWGHRIPAYRVIS 464
Query: 513 ----TSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVF 568
T EE V V + E+ + EK + + L + EDV
Sbjct: 465 KGPETDPSDEEPWV---VARSEEEALEKAKKKFGLSEEDFE-----------LEQDEDVL 510
Query: 569 DCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF 628
D WF SG P++ + +P + + + FP + G D W ++++S L K F
Sbjct: 511 DTWFSSGLFPFSTLGWP-DQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPF 569
Query: 629 RNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADAL--RLYLINSP---VVRAETLR 683
+ + + +V G+KMSK N P+EVI L +LY N P + RA L+
Sbjct: 570 KTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQ 629
Query: 684 FKKD---------------GVFAVVK---DVFLP--------------WYNAYRFLVQNA 711
KK+ G+ A + ++ L W NA +F +
Sbjct: 630 -KKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLW-NAVKFALMKL 687
Query: 712 KRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKF 771
+ P L +S D+WI + V + + Y F
Sbjct: 688 LKDFN---LPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNF 744
Query: 772 -LDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMR 830
L L ++Y+ + RL +S + + A L+ VL +++ P PF TE LYQ +
Sbjct: 745 WLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLP 804
Query: 831 KVGSGSEESIHFCSFPKEE-GKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMI 889
S ESI +P+ G +E +++ + +M+I+ R++ P K+ +
Sbjct: 805 NYLRKS-ESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNKTKPDCYV 863
Query: 890 VVHPDADFLDDIAGKLK 906
DA+ ++ I
Sbjct: 864 TAK-DAELIELIESAEN 879
Score = 76.6 bits (189), Expect = 6e-14
Identities = 61/258 (23%), Positives = 106/258 (41%), Gaps = 45/258 (17%)
Query: 16 EEKILEFWNSIDAFK--TQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQ 73
E E+W FK ++V PP TG H GH L G I+D + RY
Sbjct: 34 ESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYH 93
Query: 74 SMMGFHVTRRFGWDCHGLP----VENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYV 129
M G G D G+ VE ++ K R D +G +++ + V
Sbjct: 94 RMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHD----LGREEF--------LKKV 141
Query: 130 EEWE-----QI---ITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMP 181
EW+ I + R G +D+ + TMD + ++V F +LYE GL+Y+ +++
Sbjct: 142 WEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVN 201
Query: 182 YSTGCKTPLSNFEAGQNYKDVPDPEIM----------------VSFPIVGDPEKAAFVAW 225
+ KT +S+ E ++++ P + ++P+ ++ VA
Sbjct: 202 WCCYLKTAISDIEV--EFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVA- 258
Query: 226 TTTPWTLPSNLALCVNAN 243
TT T+ ++A+ V+
Sbjct: 259 TTRIETMLGDVAVAVHPK 276
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 149 bits (377), Expect = 2e-36
Identities = 197/915 (21%), Positives = 325/915 (35%), Gaps = 183/915 (20%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+ G+ H GH TI ++ R++ M G +V G+ G P+ + IKRRD+
Sbjct: 34 PYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAEL---IKRRDE 90
Query: 109 VFQMGIDKYNEACRS----------IVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFME 158
+ + + R IV + E E G ID+R +KT D +
Sbjct: 91 LTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDR 150
Query: 159 SVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPE 218
+ W +L E GL+ KG + Y P+ + + I++ F + D
Sbjct: 151 FIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFEL-EDGA 209
Query: 219 KAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAA 278
FVA T P T+ VN TYV + G+ ++ ++ L +K K
Sbjct: 210 -FYFVAATLRPETVYGVTNCWVNPTITYVIA--EVGGEKWITSKEAFENLSYQKLK---- 262
Query: 279 NGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDY 338
Y+ + EV G +GKK
Sbjct: 263 ------------------------------------YKPIEEV-PGKQFIGKKVHNPVVG 285
Query: 339 FKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDY-----------RVCIENQIINKG 387
+ ++ +V + GTG+V PA DDY + I+ +I+
Sbjct: 286 PE------VPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIE 339
Query: 388 ENLIVAVDDDGCFTGK-------------------------------------ITDFSGR 410
++ D G K I + G
Sbjct: 340 PVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGM 399
Query: 411 YVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVP-SWFVRV--ETLKEK 467
V +A + + L G + S C R T I + V WFV+ E+ KE
Sbjct: 400 KVSEAKEKVKADLIDAGLADVMYEFSESPVIC-RCGTDCIVKVVEDQWFVKYSDESWKEL 458
Query: 468 LLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVD 527
+ + +P+ VK F ++ +DWA R GT LP W D + +I
Sbjct: 459 AHECLEGMRIIPEEVKNA-FEGKIDWLKDWACCRRYGLGTRLP-W---DEKWLI------ 507
Query: 528 KLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWF-ESGSMPYAYIHYP- 585
E LS I+ + + I H G E + ++ FD F G + I P
Sbjct: 508 --ESLSDSTIYMAY-YTIAHYLNKDYYGNE----QMTDEFFDYIFLGKGDVKNTNIPLPA 560
Query: 586 FENA-EHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNGLVLAEDGK 643
+ FE +P + G D + A+F + + R ++ NG V+ E GK
Sbjct: 561 IQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLE-GK 619
Query: 644 KMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLR---FKKDGVFAVVKDVFLPW 700
KMSK N + + + +GAD RLY+ ++ AET++ +K+ V + +
Sbjct: 620 KMSKSKGNVLTLEQAVEKFGADVARLYIADA----AETVQDADWKESEVEGTILRLE--- 672
Query: 701 YNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYR 760
Y F + K +E G + +D+W+ S + + + ME ++
Sbjct: 673 -RLYEFAEEITKESNLETGEET------------SFIDRWLESRMNAAIKETYEAMENFQ 719
Query: 761 LYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPF 820
V Y L L + Y R R G + + L L T K++APF P
Sbjct: 720 TRKAVKYALFDLQADVDWYRR--------RGGVNHKDV----LARYLETWIKLLAPFAPH 767
Query: 821 FTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTII-DLARNIRERHNK 879
F E +++ + G S FP+ + +++ V + +L R+I+E
Sbjct: 768 FAEEMWEEVGNEGFVSLA-----KFPEAS---EPAVDKEVEAAEEYLRNLVRDIQEIAKI 819
Query: 880 PLKSPLREMIVVHPD 894
P R + D
Sbjct: 820 DASKPKRVYLYTSED 834
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 146 bits (370), Expect = 1e-35
Identities = 134/561 (23%), Positives = 232/561 (41%), Gaps = 79/561 (14%)
Query: 349 VIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFS 408
+IAD YV D GTG++ +P +DY + + G ++ ++ DG + + +
Sbjct: 311 IIADRYVDKDFGTGVLKISPGHDHNDYLLARK-----LGLPILNVMNKDG----TLNEVA 361
Query: 409 GRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDT---PLIYRAVPSWFVRVETLK 465
G Y +A + + L+ G VK T P R PL+ + WFV +E L
Sbjct: 362 GLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK---QWFVTMEPLA 418
Query: 466 EKLLD--NNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVW---TSEDGEEI 520
EK L N + +P+ EK +++WL N +DW +SR +WG +PVW + E+
Sbjct: 419 EKALKAVENGELTIIPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDY 477
Query: 521 IVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYA 580
IV S ++ + + EK + +++ P DV D WF S P++
Sbjct: 478 IVARSAEEALEKAREK----YGKDVEIYQDP--------------DVLDTWFSSALWPFS 519
Query: 581 YIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAE 640
+ +P +AE F+ +P + G D W ++++ G F + +GL+
Sbjct: 520 TLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDS 579
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV---VRAETLRFKKDGVFAVVKDVF 697
G+KMSK L N P++ I ++G DALR L + T R + F
Sbjct: 580 QGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTN----- 634
Query: 698 LPWYNAYRFLVQN--------------AKRLEIEGGAPFIPLDLATLQKSSNVLDQWINS 743
+NA +F++QN A + + E +PL + W+ S
Sbjct: 635 -KLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLP-----------ECWVVS 682
Query: 744 ATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALST 802
L+ V + Y V + F + + Y+ ++ RL A +
Sbjct: 683 KLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAV 742
Query: 803 LYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLR 862
L V K++ PF PF TE L+Q + E++ +P+ +D + +
Sbjct: 743 LLYVFENILKLLHPFMPFVTEELWQALPYRK----EALIVSPWPQTSLPKDLKSIKRFEN 798
Query: 863 MMTIIDLARNIRERHN-KPLK 882
+ ++ RN R ++ +P K
Sbjct: 799 LQSLTRAIRNARAEYSVEPAK 819
Score = 95.4 bits (237), Expect = 1e-19
Identities = 80/265 (30%), Positives = 124/265 (46%), Gaps = 32/265 (12%)
Query: 7 GKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIK 66
K F F+ EE+I +W S FK DR +V PP TG H GH + T++
Sbjct: 58 AKSFDFT-SEERIYNWWESQGYFKPNFDRG--GDPFVIPMPPPNVTGSLHMGHAMFVTLE 114
Query: 67 DIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTL---GIKRRDDVFQMGIDKYNEACRS 123
DI+ RY M G G D G+ + ++K L GIKR D +G D++
Sbjct: 115 DIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTD----LGRDEF------ 164
Query: 124 IVTRYVEEWEQI--------ITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175
T+ V EW++ I R G D+ + T+D + +V F +L+EKGL+Y+
Sbjct: 165 --TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222
Query: 176 GFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSN 235
G ++ +S +T +S+ E Y + P + + + G E +A TT P TL +
Sbjct: 223 GSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGGSEDFLTIA-TTRPETLFGD 279
Query: 236 LALCVNANFTYVKVRNKYTGKIYVV 260
+A+ VN +KY GK+ +V
Sbjct: 280 VAIAVNP---EDDRYSKYIGKMAIV 301
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 114 bits (286), Expect = 3e-29
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDN-LTNIYVRFNRKRLKGRSGEDDC 796
D+WI S L+ V + E YR T L +F N L++ Y+ ++ RL G D
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYG-EAPDSD 59
Query: 797 RIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKRDER 855
R A + LY VL T +++APF PF TE L+Q + G +ESIH +P+ +E + DE
Sbjct: 60 RSAQTVLYEVLETLLRLLAPFMPFITEELWQKL-----GKKESIHLAPWPEPDEVEEDEE 114
Query: 856 IEQSVLRMMTIIDLARNIRERHNKPLKSPLREMI 889
+E+ I+ R +R PL ++
Sbjct: 115 LEEEFELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 124 bits (313), Expect = 1e-28
Identities = 144/599 (24%), Positives = 239/599 (39%), Gaps = 143/599 (23%)
Query: 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENL--IVAVDDDGCFTGKI-----TDFSGRYV 412
GTG V PA +D+ V K NL I DDG KI ++F+G
Sbjct: 378 GTGAVKITPAHDPNDFEV-------GKRHNLEFINIFTDDG----KINSNGGSEFAGMPR 426
Query: 413 KDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSD---TPLIYRAVPSWFVRVETLKEKLL 469
A + +IEAL+ KG + C R++ P+I P WFV ++ ++ L
Sbjct: 427 FAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIK---PQWFVNCSSMAKQAL 483
Query: 470 D-----NNKQTYWVP-DYVKEKRFHNWLENARDWAVSRSRFWGTPLPVW--TSEDGEE-- 519
D NK+ ++P Y+ E + WLEN RDW +SR +WG +P W T ED +
Sbjct: 484 DAAIDGENKKLEFIPKQYLAE--WKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKE 541
Query: 520 --------IIVVDSVDKLE----KLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDV 567
++ + D L K G+K F+L + DV
Sbjct: 542 LGSYNDHWVVARNESDALLEASQKFPGKK-FELSQD---------------------PDV 579
Query: 568 FDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPA 627
D WF SG P + + +P ++ + + +P + G D W ++++ L G
Sbjct: 580 LDTWFSSGLFPLSVLGWP-DDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVP 638
Query: 628 FRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN--------------------------- 660
FR + + ++ G+KMSK L N P+EVIN
Sbjct: 639 FRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEG 698
Query: 661 ---DY-------GADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW----YNAYRF 706
D+ G DALR L++ A++ + D + VV + W +NA RF
Sbjct: 699 QKKDFPNGIAECGTDALRFALVS---YTAQSDKINLD-ILRVVG--YRQWCNKLWNAVRF 752
Query: 707 LVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRL----- 761
+ +L + P L + T+ S +WI S + ++ Y
Sbjct: 753 AMS---KLGDDYTPP-ATLSVETMPFSC----KWILSVLNKAISKTVSSLDAYEFSDAAS 804
Query: 762 --YTVVPYLL--KFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPF 817
Y+ Y F++ + + N + R+ D TL+ L T +++ PF
Sbjct: 805 TVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQD------TLWICLDTGLRLLHPF 858
Query: 818 TPFFTEALYQNMRKV-GSGSEESIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNIR 874
PF TE L+Q + + ++SI +P E +E++E + +++ + R++R
Sbjct: 859 MPFVTEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLR 917
Score = 61.8 bits (150), Expect = 2e-09
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
K +S S E+ +W F D +P +V PP TG H GH L I+D
Sbjct: 98 KQYSPSAVEKSWYAWWEKSGYFGA--DAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 155
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127
+ R++ M G++ G D G+ + ++K L +R +G +++ S V +
Sbjct: 156 TIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEF----VSEVWK 211
Query: 128 YVEEWEQII----TRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYS 183
+ +E+ I R G +D+ + TMD + ++V F +LY++GL+Y+ +++ +
Sbjct: 212 WKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWD 271
Query: 184 TGCKTPLSNFE 194
+T +S+ E
Sbjct: 272 CTLRTAISDVE 282
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 91.6 bits (228), Expect = 1e-18
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 24/188 (12%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYV---FYDGPPFATGLPHYGHILAGT 64
++ EEK + W F+ D + + YV F P+ +G H GH+ T
Sbjct: 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMF----PYPSGALHVGHVRNYT 58
Query: 65 IKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSI 124
I D++ RY+ M G++V GWD GLP EN K
Sbjct: 59 IGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI-----------------GTDPAKW 101
Query: 125 VTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYST 184
+ ++ + G ID+R ++ T D ++ + + W F +LYEKGL Y+ + +
Sbjct: 102 TYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCP 161
Query: 185 GCKTPLSN 192
T L+N
Sbjct: 162 VDGTVLAN 169
Score = 90.8 bits (226), Expect = 2e-18
Identities = 103/467 (22%), Positives = 168/467 (35%), Gaps = 100/467 (21%)
Query: 477 WVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKL-EKLSGE 535
+ + F N+ RDW SR R+WG P+P+ ED +V D L KL
Sbjct: 404 GLVKRGLGQWFVNYRL--RDWLKSRQRYWGEPIPIIHCEDCG--VVPVPEDWLPVKLPER 459
Query: 536 KIFDLHRHNID------HITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENA 589
+ ++P S R D D + +S + F
Sbjct: 460 VRGLGTGSPLPWDEEWVIESLPDSTA------YRETDTMDTFIDSSWYYLRFFDPIFLGE 513
Query: 590 -----EHFENNFP-GQFIAE----GLDQTRGWFYTLMVLSTALFG------KPAFRNLIC 633
E F +P +I L F+ ALF F+ LI
Sbjct: 514 LPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHK-----ALFDEGLVPKDEPFKKLIT 568
Query: 634 NGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI-NSPVVRAETLRFKKDGVFAV 692
G+VL E+G+KMSK N P E + YGAD +RLY++ +P + L + + GV
Sbjct: 569 QGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPP--EQDLEWSESGVEGA 626
Query: 693 VKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFV 752
+ FL + + ++ ++L E L K D+W + V
Sbjct: 627 RR--FLQRV--WNLVKEHLEKLVEE------------LTKEQGKEDRW---LLHRTIKKV 667
Query: 753 RQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCK 812
++ E + + L L N ++ R + R AL T V L
Sbjct: 668 TEDFEARQTFNTAIAA---LMELLNALRKYLR---RTEGDRKVLREALETW--VRL---- 715
Query: 813 VMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARN 872
+APF P E L++ + G+E + +P+ + +E + + + ++ + N
Sbjct: 716 -LAPFAPHIAEELWEEL-----GNEGFVSNAPWPEPD---EEALVEDEVEIVVQV----N 762
Query: 873 IRERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLV 919
+ R VV DAD K+KE L + V+ +
Sbjct: 763 GKVRA----------REVVAADAD-----EEKVKEIALADEEVQKFL 794
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 86.8 bits (216), Expect = 3e-17
Identities = 126/532 (23%), Positives = 213/532 (40%), Gaps = 137/532 (25%)
Query: 55 PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLG----IKRRD--- 107
H GH TI D++ RY+ M G++V + G P+ LG I R D
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPI-------LGIAERIARGDPET 53
Query: 108 -----DVFQMG---IDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMES 159
++ + ++K+ + IV + EE ++ + R G ID+R ++ T D ++ +
Sbjct: 54 IELYKSLYGIPEEELEKFKDP-EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKF 112
Query: 160 VWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIV--GDP 217
+ W F +L EKGL+ KG + Y P+ + + D +PEI V + ++ +
Sbjct: 113 IEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGD----HDLLDGEEPEI-VEYTLIKFEES 167
Query: 218 EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSA 277
E A T P T+ L VN + TYVK + G+ ++V
Sbjct: 168 EDLILPAATLRPETIFGVTNLWVNPDATYVKA--EVDGEKWIV----------------- 208
Query: 278 ANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYE-PLF 336
SK+++ K QD ++ E + E+ G+ L+GKK + P+
Sbjct: 209 -------SKEAAEKLSF------QDRDV----------EIIEEI-KGSELIGKKVKNPV- 243
Query: 337 DYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDY---RVCIENQIINKGENLI-- 391
+ ++ ++V D+GTG+V PA DY R +N+ + I
Sbjct: 244 ------TGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPL 297
Query: 392 VAVDDDGCFTGK------------------------------------ITDFSGRYVKDA 415
+ V+ G F K +++G+ V++A
Sbjct: 298 IEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREA 357
Query: 416 DKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVP-SWFVR--VETLKE---KLL 469
+ I + L KG ++ +C R T + + V WF+ KE K L
Sbjct: 358 REKITKDLIEKGIADIMYEFSNRPVYC-RCGTECVVKVVKDQWFIDYSDPEWKELAHKAL 416
Query: 470 DNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEII 521
DN + +P+ + K F N ++ +D A +R R GT LP W D E II
Sbjct: 417 DNME---IIPEEYR-KEFENTIDWLKDRACARRRGLGTRLP-W---DEEWII 460
Score = 76.8 bits (190), Expect = 5e-14
Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 50/261 (19%)
Query: 620 TALFGK---PAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676
A+F + P R ++ NG VL E GKKMSK N + I +YGAD +RLYL +S
Sbjct: 553 VAIFPEEKWP--RGIVVNGFVLLE-GKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS-- 607
Query: 677 VRAE---TLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKS 733
AE +++ V +V + + + L + + E FI
Sbjct: 608 --AELLQDADWREKEVESVRRQL-----ERFYELAKELIEIGGEEELRFI---------- 650
Query: 734 SNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE 793
D+W+ S ++ + ME ++ V L N Y+R R GE
Sbjct: 651 ----DKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLR--------RVGE 698
Query: 794 DDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKR 852
L VL +++APFTP E L+ + G E + +P+ +E K
Sbjct: 699 ----ANNKVLREVLEIWIRLLAPFTPHLAEELWHKL-----GGEGFVSLEKWPEPDESKI 749
Query: 853 DERIEQSVLRMMTIIDLARNI 873
DE E + + +I+ R I
Sbjct: 750 DEEAELAEEYVKRLIEDIREI 770
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 75.3 bits (186), Expect = 7e-16
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 701 YNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYR 760
+NA RF++ N + + P +S ++ D+WI S V V + +E YR
Sbjct: 17 WNAARFVLMNLEDDDEPEEDP----------ESLSLADRWILSRLNKTVEEVTEALENYR 66
Query: 761 LYTVVPYLLKF-LDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTP 819
L +F ++ + Y+ + RL G E+ + A +TLY VL T +++ PF P
Sbjct: 67 FSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEEK-KAARATLYYVLETILRLLHPFMP 125
Query: 820 FFTEALYQNM 829
F TE L+Q +
Sbjct: 126 FITEELWQRL 135
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 78.8 bits (195), Expect = 1e-15
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+ +G H GH+ TI DI+ RY+ M G++V G+D GLP EN K +G D
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-IGRDPED- 66
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
+YN +++ ++ + R G D+R ++ T D ++ + W+F +LY
Sbjct: 67 -----WTEYN----------IKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLY 111
Query: 169 EKGLVYKG 176
EKGL YK
Sbjct: 112 EKGLAYKK 119
Score = 72.7 bits (179), Expect = 1e-13
Identities = 65/228 (28%), Positives = 89/228 (39%), Gaps = 68/228 (29%)
Query: 457 WFVRVET--LKEKLLDN-NKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWT 513
WF++ KEKLL + K W P+ V+ NW+ SR R+WGTP+P WT
Sbjct: 132 WFLKYSETEWKEKLLKDLEKLDGW-PEEVR-AMQENWIG------CSRQRYWGTPIP-WT 182
Query: 514 SEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFE 573
D +E LS + R+ H + P G L + F+ W
Sbjct: 183 -------------DTMESLSDSTWYYA-RYTDAH----NLEQPYEGDLEFDREEFEYW-- 222
Query: 574 SGSMPYAYIHYPFE----NAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPA-- 627
YP + EH N+ + ALF +
Sbjct: 223 ----------YPVDIYIGGKEHAPNHLL--------------YSRFN--HKALFDEGLVT 256
Query: 628 ---FRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672
+ LI G+VL E G+KMSK N +P E I YGADA RLY++
Sbjct: 257 DEPPKGLIVQGMVLLE-GEKMSKSKGNVVTPDEAIKKYGADAARLYIL 303
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 77.9 bits (192), Expect = 2e-14
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 75
EEK + W+ FK D ++ P+Y P+ +G H GH+ TI D+++RY M
Sbjct: 7 EEKWQQKWDENKTFKVTDDSSK--PKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRM 64
Query: 76 MGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQI 135
G++V GWD GLP EN IKR + ++
Sbjct: 65 KGYNVLHPIGWDAFGLPAEN-----AAIKR------------GIHPAKWTYENIANMKKQ 107
Query: 136 ITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175
+ G D+ + T D ++ + W+F +L+EKGL Y
Sbjct: 108 LQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYV 147
Score = 69.8 bits (171), Expect = 7e-12
Identities = 84/388 (21%), Positives = 139/388 (35%), Gaps = 100/388 (25%)
Query: 495 RDWAVSRSRFWGTPLPVWTSEDGEEIIVVDS-----VDKLEKLSGEKIFDLHRH-NIDHI 548
RDW SR R+WG P+P+ EDG + V + + + G+ L R ++
Sbjct: 413 RDWGFSRQRYWGEPIPIIHCEDGGVVPVPEEDLPVILPEDVVYDGDGGSPLSRIPEWVNV 472
Query: 549 TIPSSRGPEFGLLRRIEDVFDCWFESG--SMPYAYIHYP--FENAEHFENNFPGQFIAEG 604
T PS P R D D + S + Y + E E P G
Sbjct: 473 TCPSCGKPA----LRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKAEYWLPVDLYIGG 528
Query: 605 LDQT-------RGW---FYTLMVLSTALFGKPAFRNLICNGLVLA----EDGK------- 643
++ R + + ++T K F+ LI G+VL +GK
Sbjct: 529 IEHAILHLLYARFFHKFLRDIGYVNT----KEPFKKLINQGMVLGFYYPPNGKVPADVLT 584
Query: 644 --------------------KMSKKLKNYPSPVEVINDYGADALRLYLI-NSPVVRAETL 682
KMSK N P E++ YGADALRL+++ P+ A +L
Sbjct: 585 ERDEKGKDKAGGELVYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPI--AASL 642
Query: 683 RFKKDGVFAVVKDVFLPWYNAYRFL--VQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQW 740
+ + G+ A RFL V N EI G L + L+++ L +
Sbjct: 643 EWNESGLEG-----------ARRFLDRVWN-LVYEITGELDAASLTVTALEEAQKELRRD 690
Query: 741 INSATQSLV-HFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIA 799
++ + + ++E T + +++ L N + ++ L
Sbjct: 691 VHKFLKKVTEDLEKRE----SFNTAISAMMELL----NKLYKAKKEAL------------ 730
Query: 800 LSTLYNVLLTSCKVMAPFTPFFTEALYQ 827
+ L V++PF P E L++
Sbjct: 731 ---MLEYLKGFVTVLSPFAPHLAEELWE 755
Score = 39.3 bits (92), Expect = 0.013
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 442 CWRSDTPLIYRAVPSWFVRVETLKEKLLDN-NKQTYWVPDYVKEKRFHNWL 491
WR DTP+ + + WF+++ E+LL++ + +W P+ VKE + NW+
Sbjct: 173 SWRGDTPVEKKELKQWFLKITAYAEELLNDLEELDHW-PESVKEMQ-RNWI 221
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 75.1 bits (186), Expect = 1e-13
Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 63/229 (27%)
Query: 628 FRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKD 687
F+ L+ G+V KMSK N P ++I YGAD RL+ +
Sbjct: 560 FKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEM--------------- 598
Query: 688 GVFA--VVKDVFLPWYN-----AYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQW 740
FA KD L W + AYRFL Q RL ++ LD+A L + +
Sbjct: 599 --FAGPPEKD--LEWSDSGVEGAYRFL-QRVWRLVVDAKGEAGALDVAALSEDKELR--- 650
Query: 741 INSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDC--RI 798
+ V +++E R T + L++ ++ L K +D R
Sbjct: 651 --RKLHKTIKKVTEDIERLRFNTAIAALMELVNALY-----------KAEDEQDKAVLRE 697
Query: 799 ALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK 847
AL L +++APF P E L++ + G E SI +P
Sbjct: 698 ALEIL-------VRLLAPFAPHLAEELWEKL-----GHEGSIANAPWPT 734
Score = 59.3 bits (145), Expect = 9e-09
Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 66/200 (33%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYV---FYDGPPFATGLPHYGHILAGTIKDIVTRY 72
E+K ++W FKT D ++ YV F P+ +G H GH+ TI D++ RY
Sbjct: 11 EKKWQKYWEENKTFKTTEDSSK--KYYVLDMF----PYPSGGLHMGHVRNYTIGDVIARY 64
Query: 73 QSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKR---------------RDDVFQMGIDKY 117
+ M G++V GWD GLP EN IK + + +G Y
Sbjct: 65 KRMQGYNVLHPMGWDAFGLPAENA-----AIKTGTHPAEWTYENIANMKKQLKSLGFS-Y 118
Query: 118 NEACRSIVT---RYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVY 174
+ + R I T Y +W Q W+F +LYEKGL Y
Sbjct: 119 DWS-REIATCDPEYY-KWTQ---------------------------WIFLKLYEKGLAY 149
Query: 175 KGFKVMP--YSTGCKTPLSN 192
+ K P + T L+N
Sbjct: 150 R--KESPVNWCPVDGTVLAN 167
Score = 40.8 bits (97), Expect = 0.004
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 495 RDWAVSRSRFWGTPLPVWTSEDGEEIIV 522
RDW +SR R+WG P+P+ ED + V
Sbjct: 416 RDWGISRQRYWGEPIPIIHCEDCGIVPV 443
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 69.6 bits (171), Expect = 5e-12
Identities = 83/447 (18%), Positives = 140/447 (31%), Gaps = 110/447 (24%)
Query: 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAV 499
P C S R +F R+ ++KLL+ + + W N R+ +
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLE----------WYESNPDFIWPANRRNEVL 222
Query: 500 SRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNID-HITIPSSRGPEF 558
+ + E ++ + R ++D I +P G
Sbjct: 223 N-----------FLKEGLKD------------------LSITRTDLDWGIPVPGDPGK-- 251
Query: 559 GLLRRIEDVFDCWFE------SGSMPYAYIHYPFENAEHFENNFPG--QFIAEGLDQTRG 610
V WF+ S A I + + + + FI G D R
Sbjct: 252 --------VIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFI--GKDIIR- 300
Query: 611 WFYTL----MVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADA 666
F+ + M+++ G P + +G + E G+KMSK N P E++ YG DA
Sbjct: 301 -FHAVYWPAMLMAA---GLPLPTRIFAHGFLTLE-GQKMSKSRGNVVDPDELLEQYGVDA 355
Query: 667 LRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNA----------YRFLVQNAKRLE- 715
LR YL A L DG F+ + F+ NA R L K +
Sbjct: 356 LRYYL-------ARELPEGSDGDFS--WEDFVERVNADLANKLGNLANRTLGFINKYFDG 406
Query: 716 --IEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLD 773
GAP + D L + L+ V + ME Y + ++
Sbjct: 407 VVPAAGAPDLEEDEELLALAREALEA------------VAEAMEKYEFRKALEEIMALAS 454
Query: 774 NLTNIYVRFNRK---RLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMR 830
N Y + + +L + L ++ ++ PF P E ++ +
Sbjct: 455 -RANKY--IDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLG 511
Query: 831 KVGSGSEESIHFCSFPKEEGKRDERIE 857
+ P G + E
Sbjct: 512 LEEDARNFTWLGARQPLLPGHKLGPPE 538
Score = 66.9 bits (164), Expect = 4e-11
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 29/148 (19%)
Query: 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMG---FHVTRRFGWDCHGLPVENEIDKTLGIK 104
P+ G PH GH+ D+ RY + G F +T G D HG +E + +K GI
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLT---GTDEHGTKIELKAEK-EGI- 67
Query: 105 RRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWW 162
++ +DK +E + ++ D +T + E V
Sbjct: 68 ---TPQEL-VDKNHE---------------EFKELFKALNISFDNFIRTTSPEHKELVQE 108
Query: 163 VFAQLYEKGLVYKGFKVMPYSTGCKTPL 190
F +LYE G +Y Y C+ L
Sbjct: 109 FFLKLYENGDIYLREYEGLYCVSCERFL 136
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 64.9 bits (159), Expect = 6e-11
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMG---FHVTRRFGWDCHGLPVENEIDKTLGIKR 105
P+ G+PH GH+ + D+ RYQ + G VT G D HG +E + ++ G+
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVT---GTDEHGTKIEQKAEE-EGV-- 62
Query: 106 RDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWV 163
++ DKY+E + + ++ W++ DY +T + E V
Sbjct: 63 --TPQEL-CDKYHE-------IFKDLFK--------WLNISFDYFIRTTSPRHKEIVQEF 104
Query: 164 FAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199
F +LYE G +Y+G Y C+ L + ++Y
Sbjct: 105 FKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHY 140
Score = 61.4 bits (150), Expect = 8e-10
Identities = 63/296 (21%), Positives = 100/296 (33%), Gaps = 92/296 (31%)
Query: 413 KDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPL-IYRAVPSWFVRVETLKEKL--- 468
K+ ++ + L G + + + +C + L +R +F R+ +++L
Sbjct: 98 KEIVQEFFKKLYENGYIYEG---EYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEW 154
Query: 469 LDNNKQTYWVPDYVKEKRFHNWLENA-RDWAVSRSRF-WGTPLPVWTSEDGEEIIVVDSV 526
L+ N W + E +WL+ +D +++R F WG PV
Sbjct: 155 LEKNPDFIWPENARNEVL--SWLKEGLKDLSITRDLFDWGI--PV--------------- 195
Query: 527 DKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIED-VFDCWFESGSMPYAYIH-- 583
P V WF++ YI
Sbjct: 196 -----------------------------PLD------PGKVIYVWFDA---LIGYISAT 217
Query: 584 -YPFENAEHFENNFPG-----QFIAEGLDQTRGWFYTLM---VLSTALFGKPAFRNLICN 634
Y E + G FI G D R F+ + +L A G P ++ +
Sbjct: 218 GYYNEEWGNSWWWKDGWPELVHFI--GKDIIR--FHAIYWPAMLLGA--GLPLPTRIVAH 271
Query: 635 GLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVF 690
G + E GKKMSK N P +++ YGADALR YL+ KD F
Sbjct: 272 GYLTVE-GKKMSKSRGNVVDPDDLLERYGADALRYYLLRE-------RPEGKDSDF 319
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 66.4 bits (162), Expect = 8e-11
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 10 FSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLP-HYGHILAGTIKDI 68
+ F E K +W F+T D +P++ D P+ +G H GH T DI
Sbjct: 80 YPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDI 139
Query: 69 VTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRY 128
+ RY+ M G++V GWD GLP E +T G + I ++ +S+ Y
Sbjct: 140 LARYKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHPKITT-LKNIARFRSQLKSLGFSY 197
Query: 129 VEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKT 188
+W++ I+ T + ++ + W+F QL ++GL Y+ + + T
Sbjct: 198 --DWDREIS-------------TTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGT 242
Query: 189 PLSNFE 194
L+N E
Sbjct: 243 VLANEE 248
Score = 39.8 bits (93), Expect = 0.011
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 58/227 (25%)
Query: 634 NGLVLAEDGK--------KMSKKLKNYPSPVEVINDYGADALRLY-LINSPVVRAETLRF 684
+ VL +D KMSK N +P +V+++YGAD+LRLY + P+ ++T +
Sbjct: 705 DSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKT--W 762
Query: 685 KKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSA 744
GV V +RFL + RL + G PL + + + V D+ +
Sbjct: 763 STSGVEGV-----------HRFLGR-TWRL-VVGA----PLPDGSFRDGTVVTDEEPSLE 805
Query: 745 TQSLVH----FVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIAL 800
L+H V +E+E R T + +++F + + R A+
Sbjct: 806 QLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAY--------------KWDKVPREAI 851
Query: 801 STLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK 847
VLL S P+ P E L+ + G S+ + +P+
Sbjct: 852 EPF--VLLLS-----PYAPHLAEELWFRL-----GHSNSLAYEPWPE 886
Score = 37.9 bits (88), Expect = 0.036
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 495 RDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVD 527
RDW +R R+WG P+PV ED E + V D
Sbjct: 505 RDWLFARQRYWGEPIPVVFLEDSGEPVPVPESD 537
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 62.3 bits (152), Expect = 7e-10
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+ G PH GH+ D+ RY + G+ V G D HG +E +K G+ ++
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEK-EGVTPQE- 65
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
+V RY EE++++ + I F + +T + E V F +LY
Sbjct: 66 ---------------LVDRYHEEFKELFKKFN--ISFDDFIRTTSERHKELVQEFFLKLY 108
Query: 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVG 215
EKG +Y+G Y + L PD + + P G
Sbjct: 109 EKGDIYEGEYEGWYCVSDERFL------------PDRYVEGTCPYCG 143
Score = 59.2 bits (144), Expect = 7e-09
Identities = 62/280 (22%), Positives = 101/280 (36%), Gaps = 88/280 (31%)
Query: 427 GRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKR 486
GR ++ L + P S + + +F R+ ++KLL+ K+ P +
Sbjct: 156 GRPLEPTELIN--PRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEV 213
Query: 487 FHNWLENA-RDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNI 545
+WL+ +D +++R WG P+P D ++I V
Sbjct: 214 VLSWLKEGLKDLSITRDLDWGIPVP----GDPGKVIYV---------------------- 247
Query: 546 DHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIH---YPFENAEHFE----NNFPG 598
WF++ YI Y N E ++ ++
Sbjct: 248 -------------------------WFDA---LIGYISATKYLSGNPEKWKKFWADDPDT 279
Query: 599 ---QFIAEGLDQTRGWFYTL----MVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKN 651
FI G D R F+ + M+++ L P + +G + E G KMSK N
Sbjct: 280 EIVHFI--GKDIIR--FHAIYWPAMLMAAGL---PLPTQVFAHGWLTVE-GGKMSKSRGN 331
Query: 652 YPSPVEVINDYGADALRLYLI-NSPVVRAETLRFKKDGVF 690
P E+++ YG DALR YL +P KDG F
Sbjct: 332 VVDPDELLDRYGVDALRYYLAREAP--------EGKDGDF 363
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 54.5 bits (132), Expect = 3e-08
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 737 LDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDD 795
LD++ L+ VR+ E Y + V L F +L+ Y+ + RL + +
Sbjct: 45 LDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSL 104
Query: 796 CRI-ALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK-EEGKRD 853
R A + LY++L K++AP PF E +++++ EES+ +P+ E +D
Sbjct: 105 ERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG--EKKEESVFLEDWPELPEEWKD 162
Query: 854 ERIEQSVLRMMTI 866
E +E+ +++ +
Sbjct: 163 EELEEKWEKLLAL 175
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 53.9 bits (130), Expect = 4e-07
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+A G PH GH + D+ RY+ + G+ V G D HG +E + +
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAE---------- 57
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
Q G+ + +V +Y EE++ I F +T D + E V +F +L
Sbjct: 58 --QEGLTP-----KELVDKYHEEFKDDWKWLN--ISFDRFIRTTDEEHKEIVQKIFQKLK 108
Query: 169 EKGLVYKG 176
E G +Y+
Sbjct: 109 ENGYIYEK 116
Score = 48.9 bits (117), Expect = 1e-05
Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 47/247 (19%)
Query: 599 QFIAEGLDQTRGWFYTL----MVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPS 654
FI G D R F+T+ M++ L P + +G + E G KMSK L N
Sbjct: 286 HFI--GKDIVR--FHTIYWPAMLMGLGL---PLPTQVFSHGYLTVE-GGKMSKSLGNVVD 337
Query: 655 PVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNA----------Y 704
P +++ +GAD LR YL+ KDG F+ + F+ NA
Sbjct: 338 PSDLLARFGADILRYYLLKE-------RPLGKDGDFS--WEDFVERVNADLANKLGNLLN 388
Query: 705 RFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTV 764
R L K +P + T ++ +L ++L + +E +
Sbjct: 389 RTLGFIKKYFNGV-----LPSEDITDEEDKKLLKL----INEALEQID-EAIESFEFRKA 438
Query: 765 VPYLLKFLDNLTNIYVRFNR--KRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFT 822
+ ++K L + N Y+ N+ + K + L+ ++ ++ P P +
Sbjct: 439 LREIMK-LADRGNKYIDENKPWELFKQSPRLKEL---LAVCSMLIRVLSILLYPIMPKLS 494
Query: 823 EALYQNM 829
E + + +
Sbjct: 495 EKILKFL 501
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 52.9 bits (128), Expect = 8e-07
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 49 PFATGLPHYGHILAGTI--KDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRR 106
P+A G H GH+ AG+ D+ RYQ + G V G D HG P+E K G+ +
Sbjct: 12 PYANGPLHLGHL-AGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-EGVTPQ 69
Query: 107 DDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQ 166
+ + +Y EE ++ + G I + +T E V F +
Sbjct: 70 E----------------LADKYHEEHKEDFKKLG--ISYDLFTRTTSPNHHEVVQEFFLK 111
Query: 167 LYEKGLVYKGFKVMPYSTGCK 187
LYE G +YK Y
Sbjct: 112 LYENGYIYKKTIEQAYCPSDG 132
Score = 38.3 bits (90), Expect = 0.027
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDN-NKQTYWVPDYVKEKRFHNWL-ENARDW 497
P S + +R +F+ + E+L W P V NWL E +
Sbjct: 172 PRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDW-PPNVLNFT-LNWLKEGLKPR 229
Query: 498 AVSRSRFWGTPLPVWTSED 516
A++R WG P+P E
Sbjct: 230 AITRDLDWGIPVPWPGFEG 248
Score = 31.7 bits (73), Expect = 3.1
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLI-NSP 675
+G K SK + + Y D LR YL N+P
Sbjct: 331 EGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAP 366
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 49.0 bits (118), Expect = 1e-05
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 19/79 (24%)
Query: 615 LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
LM L G P + + +G L +DGK MSK N P E+++ YG DALR YL
Sbjct: 276 LMAL-----GLPLPKKVFAHGWWLMKDGK-MSKSKGNVVDPEELVDRYGLDALRYYL--- 326
Query: 675 PVVRAETLR---FKKDGVF 690
LR F DG F
Sbjct: 327 -------LREVPFGSDGDF 338
Score = 39.4 bits (93), Expect = 0.011
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 55 PHYGH----ILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDD 108
PH GH I A D + RY+ + G+ V F G D HG ++ + + G +
Sbjct: 19 PHIGHAYTTIAA----DALARYKRLQGYDV--FFLTGTDEHGQKIQ-QAAEKAGKTPQ-- 69
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWVFAQ 166
E I + E W+++ D D +T D + + V +F +
Sbjct: 70 ----------EYVDEISAGFKELWKKL--------DISYDKFIRTTDERHKKVVQKIFEK 111
Query: 167 LYEKGLVYKGFKVMPYSTGCKT 188
LYE+G +YKG Y C+T
Sbjct: 112 LYEQGDIYKGEYEGWYCVSCET 133
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 48.3 bits (116), Expect = 2e-05
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 31/145 (21%)
Query: 48 PPFATGLPHYGHILAGT--IKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGI 103
+ G PH GH A T D++ R++ + G+ V F G D HG ++ + ++ GI
Sbjct: 9 IYYPNGKPHIGH--AYTTLAADVLARFKRLRGYDV--FFLTGTDEHGQKIQRKAEE-AGI 63
Query: 104 KRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVW 161
++ + WE ++ D +T D + E+V
Sbjct: 64 ----SPQEL--------ADRNSAAFKRLWEA--------LNISYDDFIRTTDPRHKEAVQ 103
Query: 162 WVFAQLYEKGLVYKGFKVMPYSTGC 186
+F +L G +Y G Y C
Sbjct: 104 EIFQRLLANGDIYLGKYEGWYCVRC 128
Score = 47.6 bits (114), Expect = 4e-05
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW 700
DG+KMSK L N P +++++YG DA+R +L + F +DG F+ ++ F+
Sbjct: 296 DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFL-------LREIPFGQDGDFS--REAFINR 346
Query: 701 YNA 703
NA
Sbjct: 347 INA 349
Score = 39.9 bits (94), Expect = 0.008
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLD--NNKQTYWVPDYVKE--KRFHNWLENAR 495
C + P+ + S+F R+ ++KLL+ + P + F +
Sbjct: 142 YRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVK--SGLK 199
Query: 496 DWAVSRSRF-WGTPLP--------VW 512
D ++SR+ F WG P+P VW
Sbjct: 200 DLSISRTNFDWGIPVPGDPKHVIYVW 225
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 45.6 bits (109), Expect = 4e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 619 STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
S A GKP R + G + DG+KMSK L N+ + + + Y + LRL L++S
Sbjct: 150 SEAATGKPFARYWLHTGHLTI-DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSS 204
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 43.1 bits (102), Expect = 6e-04
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 619 STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI----NS 674
S A F + + + NG ++ +G+KMSK L N+ + +V+ Y LR +L+ S
Sbjct: 229 SEAAFDQQLAKYWLHNGHLMI-EGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRS 287
Query: 675 PVVRAETL 682
P+ +E L
Sbjct: 288 PLDFSEEL 295
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 41.4 bits (98), Expect = 0.003
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 619 STALFGKPAFRNL-ICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
S A G F + NG + DG+KMSK L N+ + +++ Y + LRL+L++S
Sbjct: 243 SEAATGVKPFAKYWMHNGFLNI-DGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSS 298
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 38.3 bits (90), Expect = 0.003
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCR 797
D+W+ S L+ + E + + L L N + Y R G +
Sbjct: 37 DRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRE--------RGGAGMNK 88
Query: 798 IALSTLYNVLLTSCKVMAPFTPFFTEALYQNM 829
L + +++APF P E ++ +
Sbjct: 89 ---DLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 39.7 bits (94), Expect = 0.008
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 619 STALFGKPAFRNL-ICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
S A GKP F N + NG V +G+KMSK L N+ + +++ Y + LR +L+++
Sbjct: 242 SEAATGKP-FANYWMHNGFVTV-NGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSA 296
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 37.1 bits (86), Expect = 0.010
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCR 797
D+ + + Q + +E T V L KF N N Y+ + L+ E+
Sbjct: 41 DRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NELNWYLDELKPALQ---TEELRE 96
Query: 798 IALSTLYNVLLTSCKVMAPFT 818
L+ L L+ K++APFT
Sbjct: 97 AVLAVLRAALVVLTKLLAPFT 117
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 39.3 bits (92), Expect = 0.013
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 618 LSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYL 671
S A FGK + + NG ++ D +KMSK L N+ + +V+ +Y + LR +L
Sbjct: 240 QSEAAFGKQLAKYWMHNGFLMI-DNEKMSKSLGNFFTVRDVLKNYDPEILRYFL 292
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 38.6 bits (91), Expect = 0.020
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+A G H GH++ DI RYQ M G V D HG P+ +K
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIM--------LKAE-- 60
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
+ GI ++ RY E ++ G I F N T + E ++ +L
Sbjct: 61 --KEGITP-----EELIARYHAEHKRDFAGFG--ISFDNYGSTHSEENRELAQEIYLKLK 111
Query: 169 EKGLVYK 175
E G +Y+
Sbjct: 112 ENGYIYE 118
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 36.6 bits (84), Expect = 0.077
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 638 LAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVF 697
L +DG KM K L N P E++ +G DA+R + + + F DG ++ +D F
Sbjct: 360 LTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLRE-------VEFGNDGDYS--EDRF 410
Query: 698 LPWYNAY 704
+ NA+
Sbjct: 411 IKIVNAH 417
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 33.7 bits (78), Expect = 0.15
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 30/133 (22%)
Query: 703 AYRFLVQNAKRL------EIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756
AYRFL R+ E A P A L + L + ++ + V +++
Sbjct: 9 AYRFL----NRVWRLVTELAEALAA--PAAAAELSEEDKELRRKLHKT----IKKVTEDI 58
Query: 757 EGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAP 816
E R T + L++ ++ L + + L L T ++AP
Sbjct: 59 ERLRFNTAIAALMELVNALYKY--------------KKKDAQHAAVLREALETLVLLLAP 104
Query: 817 FTPFFTEALYQNM 829
F P E L++ +
Sbjct: 105 FAPHIAEELWEEL 117
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 35.0 bits (81), Expect = 0.31
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 620 TALFGK-PAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYL 671
TA++ + R CNG ++ + +KMSK N+ + + I ++ ADA R L
Sbjct: 694 TAIWAEEHWPRGFRCNGHLML-NSEKMSKSTGNFLTLRQAIEEFSADATRFAL 745
Score = 30.4 bits (69), Expect = 8.5
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQP-EYVFYDGP-PFATGLPHYGHILAGTIKDIVTRYQ 73
E + ++W F+ + +P E F + P P+ GL H GH + + + Y
Sbjct: 19 EVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYH 78
Query: 74 SMMGFHVTRRFGWDCHGLPVENEIDK 99
+ G +V F + C G+P++ DK
Sbjct: 79 RLRGANVLLPFAFHCTGMPIKASADK 104
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 33.4 bits (76), Expect = 0.94
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 632 ICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN----SPV 676
I NG V D +KMSK L N+ + +VI+ Y ALRL+L+ SP+
Sbjct: 312 IHNGFVTV-DSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPI 359
>gnl|CDD|211386 cd11300, Fut8_like, Alpha 1-6-fucosyltransferase. Alpha
1,6-fucosyltransferase (Fut8) transfers a fucose moiety
from GDP-fucose to the reducing terminal
N-acetylglucosamine of the core structure of Asn-linked
oligosaccharides, in a process termed core fucosylation.
Core fucosylation is essential for the function of
growth factor receptors. O-fucosyltransferase-like
proteins are GDP-fucose dependent enzymes with
similarities to the family 1 glycosyltransferases (GT1).
They are soluble ER proteins that may be proteolytically
cleaved from a membrane-associated preprotein, and are
involved in the O-fucosylation of protein substrates,
the core fucosylation of growth factor receptors, and
other processes.
Length = 328
Score = 31.8 bits (73), Expect = 1.9
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 180 MPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIV-GDPEKAAFVAWTTTPWTLPSNLA 237
+P S C + A ++ +V PI+ + F+ P +P +LA
Sbjct: 87 LPLSETCTDRSGDNTAVWWWEPTNSDVQVVKLPIIDSLHSRPPFL-----PLAVPEDLA 140
>gnl|CDD|215337 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein.
Length = 351
Score = 31.7 bits (72), Expect = 2.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 16/58 (27%)
Query: 509 LPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIED 566
P+W +DG ++V D +D NID +IP+ G FG+ R+ +
Sbjct: 110 APIWIGDDGPYVVVFDPLDGSR-------------NID-ASIPT--GTIFGIYNRLVE 151
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 30.5 bits (70), Expect = 2.8
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 32/123 (26%)
Query: 316 EKLGEVFSGAY----LVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFG 371
EK G +F+G Y + G+K P++ IA N+V D GTG V PA
Sbjct: 72 EKEG-IFTGLYAIHPITGEKI-PIW-------------IA-NFVLMDYGTGAVMAVPAHD 115
Query: 372 EDD------YRVCIENQIINKGENLIVAVDDDGCFTGK-----ITDFSGRYVKDADKDII 420
+ D Y + I+ I + + + ++ +T K +F G ++A + I
Sbjct: 116 QRDFEFAKKYNLPIKQVIKPEDGDEDDLIMEE-AYTEKGILINSGEFDGLDSEEAKEAIA 174
Query: 421 EAL 423
E L
Sbjct: 175 EKL 177
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.2 bits (71), Expect = 3.9
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALR-LYLINS 674
G KMSK LKN+ + + ++ Y A +R L+L++
Sbjct: 312 KGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHK 346
>gnl|CDD|133073 cd03862, M14-like_7, Peptidase M14-like domain; uncharacterized
subfamily. A functionally uncharacterized subgroup of
the M14 family of metallocarboxypeptidases (MCPs). The
M14 family are zinc-binding carboxypeptidases (CPs)
which hydrolyze single, C-terminal amino acids from
polypeptide chains, and have a recognition site for the
free C-terminal carboxyl group, which is a key
determinant of specificity. Two major subfamilies of the
M14 family, defined based on sequence and structural
homology, are the A/B and N/E subfamilies. Enzymes
belonging to the A/B subfamily are normally synthesized
as inactive precursors containing preceding signal
peptide, followed by an N-terminal pro-region linked to
the enzyme; these proenzymes are called
procarboxypeptidases. The A/B enzymes can be further
divided based on their substrate specificity;
Carboxypeptidase A-like (CPA-like) enzymes favor
hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 273
Score = 30.3 bits (69), Expect = 6.2
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 18/50 (36%)
Query: 558 FGLLRRIEDVFDCWFESGSMPYAYIHYPFENA-------EHFENNFPGQF 600
FGL+ RI WF PYAY P + E E +P
Sbjct: 160 FGLVDRI------WF-----PYAYTKEPIPHLAEIYALKELLERTYPNHV 198
>gnl|CDD|235872 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 30.0 bits (68), Expect = 7.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 185 GCKTPLS--NFEAGQNYKDVPDPEIM 208
G K P S E Q+Y DV DPE M
Sbjct: 202 GTKQPASPETVENRQHYLDVIDPESM 227
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 30.5 bits (68), Expect = 7.3
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 634 NGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
NG + DG+KMSK L N+ + EV+ Y + +R +++ +
Sbjct: 499 NGFIRV-DGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRA 538
>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyze
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 29.5 bits (67), Expect = 8.8
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 484 EKRFHNWLENARDWAVSRSRF-------WGTPLPVWTSEDGEEI-IVVDSVDKL 529
+ +A + + + G P+ + ED E++ ++D VD L
Sbjct: 9 LGEEGGHVFHAAGASYIAASYVKAVEGAGGLPVLLPILEDPEDLEALLDLVDGL 62
>gnl|CDD|217871 pfam04069, OpuAC, Substrate binding domain of ABC-type glycine
betaine transport system. Part of a high affinity
multicomponent binding-protein-dependent transport
system involved in bacterial osmoregulation. This domain
is often fused to the permease component of the
transporter complex. Family members are often integral
membrane proteins or predicted to be attached to the
membrane by a lipid anchor. Glycine betaine is involved
in protection from high osmolarity environments for
example in Bacillus subtilis. The family member OpuBC is
closely related, and involved in choline transport.
Choline is necessary for the biosynthesis of glycine
betaine. L-carnitine is important for osmoregulation in
Listeria monocytogenes. Family also contains proteins
binding l-proline (ProX), histidine (HisX) and taurine
(TauA).
Length = 256
Score = 29.6 bits (67), Expect = 9.8
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 461 VETLKEKLLDNNKQTYWVPDYVKEK 485
+ L N VP YV EK
Sbjct: 75 GLLVLGPLGAGNTYGLAVPKYVAEK 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 62,766,701
Number of extensions: 6437552
Number of successful extensions: 6039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5824
Number of HSP's successfully gapped: 129
Length of query: 1193
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1085
Effective length of database: 6,147,370
Effective search space: 6669896450
Effective search space used: 6669896450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.6 bits)