RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 000999
(1193 letters)
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 1305 bits (3381), Expect = 0.0
Identities = 312/883 (35%), Positives = 471/883 (53%), Gaps = 76/883 (8%)
Query: 6 EGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTI 65
E + +F + EE++L FW F+ ++ + P Y Y+GPP A GLPH GH A +
Sbjct: 4 EVGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSY 63
Query: 66 KDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIV 125
KD+ RY++M G++ RR GWD HGLPVE E++K LG+K + ++ GI+++N+ACR V
Sbjct: 64 KDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESV 123
Query: 126 TRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTG 185
Y +EWE R W+D + Y T++ ++ES+WW L+++GL+Y+ KV+PY
Sbjct: 124 FTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPR 183
Query: 186 CKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVN 241
C TPLS+ E YK++ DP + V FP+ EKA+ + WTTTPWTLP N+A V+
Sbjct: 184 CGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVH 243
Query: 242 ANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQ 301
+TY + + ++ E L E
Sbjct: 244 PEYTYAAFQVG--DEALILEEGLGRKLLGEG----------------------------- 272
Query: 302 DGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGT 361
+ L F G L G Y P + + + V+ +YV+ + GT
Sbjct: 273 -------------TQVLKT-FPGKALEGLPYTPPYPQAL---EKGYFVVLADYVSQEDGT 315
Query: 362 GIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIE 421
GIVH APAFG +D + L+ VD++G + F G Y ++A++ I+
Sbjct: 316 GIVHQAPAFGAEDLETARVYGLP-----LLKTVDEEGKLL--VEPFKGLYFREANRAILR 368
Query: 422 ALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDY 481
L+ +G L K S HSYP CWR TPL+Y A SWF++ K++L+ NN++ +WVP +
Sbjct: 369 DLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPH 428
Query: 482 VKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKI---F 538
+KE R+ WL+N DWA+SR+R+WGTPLP+W + + + S +L+ + + + F
Sbjct: 429 IKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPF 488
Query: 539 DLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPG 598
D HR +D + + + G RR+ V D W++SG+MP+A +HYPFE+ E F +FP
Sbjct: 489 DPHRPYVDQVELACACGGTM---RRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPA 545
Query: 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEV 658
FIAEG+DQTRGWF +L L LFG AF+N+IC+GL+L E G+KMSK N P ++
Sbjct: 546 DFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDI 605
Query: 659 INDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEG 718
I +GADALR Y+ S A+ RF + V V+D FL +N Y F V A +
Sbjct: 606 IRKFGADALRWYIYVSAPPEAD-RRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDL 664
Query: 719 GAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKF-LDNLTN 777
P P + +D+W+ + Q L+ V + +E Y T L F +++L+
Sbjct: 665 KNPPPP-------EKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQ 717
Query: 778 IYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNM-RKVGSGS 836
YVR NR+R D A +TLY L+ + APFTPF E L+QN+ R V +
Sbjct: 718 WYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEA 777
Query: 837 EESIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNIRERHN 878
+ES+H +P+ + DE + + ++ ++DLAR R +
Sbjct: 778 KESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARAKSG 820
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 595 bits (1536), Expect = 0.0
Identities = 183/1026 (17%), Positives = 352/1026 (34%), Gaps = 170/1026 (16%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
+ +F EEK + W F+ + + ++ P+ +G H GH TI D
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPD 61
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLG--------IKRRDDVFQMGIDKYNE 119
++ R++ M G++V W G P+ ++ + V + + + +
Sbjct: 62 VIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFED 121
Query: 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLK--FMESVWWVFAQLYEKGLVYKGF 177
+IV +++ ++ R G +D+ ++ T L F + + W F +L EKG + KG
Sbjct: 122 -PINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180
Query: 178 KVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLA 237
+ + TPL + + + I++ F + + E A T P T+
Sbjct: 181 HRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTN 240
Query: 238 LCVNANFTYVKVR--NKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVS 295
+ VN N TYVK + K + ++V++ L
Sbjct: 241 MWVNPNATYVKAKVRRKDKEETWIVSKEAAYKL--------------------------- 273
Query: 296 SGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYV 355
QD E E + E F G L+GK + ++ +V
Sbjct: 274 ---SFQDRE----------IEVIEE-FKGEKLIGKYVRNPVSGDE------VIILPAEFV 313
Query: 356 TSDSGTGIVHCAPAFGEDDYRVCIEN---------------QIINKGENLIVAVDDDGCF 400
D+ TG+V PA D+ + + N ++ ++ G F
Sbjct: 314 DPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDF 373
Query: 401 TG-----------------------------------KITDFSGRYVKDADKDIIEALKA 425
K+ + G+ V++ + I + +
Sbjct: 374 PAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLE 433
Query: 426 KGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRV--ETLKEKLLDNNKQTYWVPDYVK 483
KG + +I WF+ KEK ++ +P+ +
Sbjct: 434 KGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR 493
Query: 484 EKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRH 543
+F ++ A +R GTPLP W E E + ++ +++
Sbjct: 494 -AQFEAIIDWLDKKACARKIGLGTPLP-WDPEWVIESLSDSTIYMAYYTISRH---INKL 548
Query: 544 NIDHITIPSSRGPEF----GLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQ 599
+ P PEF L ED + +P IH E FE +P
Sbjct: 549 RQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEE---FEYWYPLD 605
Query: 600 FIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVI 659
+ G D + A+F + + I +G+KMSK N + ++ I
Sbjct: 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAI 665
Query: 660 NDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW-YNAYRFLVQNAKRLEIEG 718
+ GAD +RLY+++ +++ V + K + Y + + +E
Sbjct: 666 EENGADVVRLYIMSLAEHD-SDFDWRRKEVGKLRK--QIERFYELISQFAEYEVKGNVE- 721
Query: 719 GAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNI 778
+D+W+ + +E +R T V + + N
Sbjct: 722 ---------------LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRW 766
Query: 779 YVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEE 838
Y+R R D L + ++MAPFTP E L++ + G E
Sbjct: 767 YLRRTEGR--------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL-----GGEG 813
Query: 839 SIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADF 897
+ +P+ E +E IE + ++++ + I E +++ R I D +
Sbjct: 814 FVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIE--VAKIENAKRAYIYTAEDWKW 871
Query: 898 LDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAM 957
K+ E V E+ + +S + + +K + +R + K + + + +VK +
Sbjct: 872 ------KVAEVVSEKRDFKSSME--ELMKDSEIR--KHGKEVAKIVQKLIKERTFDVKRI 921
Query: 958 SQEDIL 963
++E L
Sbjct: 922 NEEKAL 927
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 529 bits (1364), Expect = e-171
Identities = 248/934 (26%), Positives = 411/934 (44%), Gaps = 141/934 (15%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 75
E +I E W++ D + L++ + ++ +DGPP+A G H GH L +KD + RY++M
Sbjct: 24 EPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTM 83
Query: 76 MGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEW- 132
GF+ + GWD HGLP+E + K G+ R+ M ++ E C+ + E
Sbjct: 84 QGFYA--PYVPGWDTHGLPIEQALTK-KGVDRKK----MSTAEFREKCKE----FALEQI 132
Query: 133 ----EQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFK-VMPYSTGCK 187
+ R G DF + Y T+ ++ + +F ++ +KGL+YKG K V +S +
Sbjct: 133 ELQKKDFR-RLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVY-WSPSSE 190
Query: 188 TPLSNFEAGQNYKDVPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNAN 243
+ L+ EA Y D I V+F + D A F+ WTTTPWT+PSN+A+ V+
Sbjct: 191 SSLA--EAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPE 248
Query: 244 FTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDG 303
Y + G+ Y++AE+ A+
Sbjct: 249 LKYGQY--NVNGEKYIIAEALSDAV----------------------------------- 271
Query: 304 ELARSAENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTG 362
+ S + E ++G L + P D + VI ++VT+D+GTG
Sbjct: 272 -AEALDWDKASIKLEKE-YTGKELEWVVAQHPFLDR-----ES--LVINGDHVTTDAGTG 322
Query: 363 IVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEA 422
VH AP GEDDY V + ++ +I +DD G FT + F G + A+K + +
Sbjct: 323 CVHTAPGHGEDDYIVGQQYEL-----PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDL 377
Query: 423 LKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYV 482
L KG L+K +THSYP WR+ P+I+RA P WF + +++ +LD + T + ++
Sbjct: 378 LTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWG 437
Query: 483 KEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEII---VVDSVDKLEKLSGEKI-F 538
K R +N + + +W +SR R WG PLPV+ +E+GE I+ V+ V L G I F
Sbjct: 438 K-TRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWF 496
Query: 539 DLHRHNI--DHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNF 596
+ ++ + T P S F + D+ D WF+SGS + E +F
Sbjct: 497 EREAKDLLPEGFTHPGSPNGTF---TKETDIMDVWFDSGSSHRGVL------ETRPELSF 547
Query: 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPV 656
P EG DQ RGWF + + S A G ++ L+ +G V+ +GKKMSK L N P
Sbjct: 548 PADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPD 607
Query: 657 EVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWY----NAYRFLVQNAK 712
+V+ GAD RL++ ++ A+ +R + + D Y N RF++ N
Sbjct: 608 QVVKQKGADIARLWVSSTD-YLAD-VRISDE-ILKQTSDD----YRKIRNTLRFMLGN-- 658
Query: 713 RLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL 772
I F P + + +D+++ + + E + + + F+
Sbjct: 659 ---IND---FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFI 712
Query: 773 DN-LTNIYVRFNRKRLKGR---SGEDDC--RIALSTLYNVLLTSCKVMAPFTPFFTEALY 826
+ L+N Y+ + K D R + LY +L+ K++AP E ++
Sbjct: 713 NVELSNFYLDY----GKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVW 768
Query: 827 QNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTI-------IDLARNIRERHNK 879
+ EES+H PK + D+ + M + ++ ARN K
Sbjct: 769 SHTPH---VKEESVHLADMPKVV-EVDQALLDKWRTFMNLRDDVNRALETARN-----EK 819
Query: 880 PLKSPLREMIVVHPDADFLDDIAGKLKEYVLEEL 913
+ L + + + F + L +L
Sbjct: 820 VIGKSLEAKVTIASNDKFNASEFLTSFDA-LHQL 852
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 498 bits (1284), Expect = e-161
Identities = 158/900 (17%), Positives = 292/900 (32%), Gaps = 170/900 (18%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
+ +F EEK + W F+ + + ++ P+ +G H GH TI D
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPD 61
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA------- 120
++ R++ M G++V W G P+ ++ IK RD +
Sbjct: 62 VIARFKRMQGYNVLFPMAWHITGSPIVGIAER---IKNRDPKTIWIYRDVYKVPEEILWT 118
Query: 121 ---CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLK--FMESVWWVFAQLYEKGLVYK 175
+IV +++ ++ R G +D+ ++ T L F + + W F +L EKG + K
Sbjct: 119 FEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178
Query: 176 GFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSN 235
G + + TPL + + + I++ F + + E A T P T+
Sbjct: 179 GAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGV 238
Query: 236 LALCVNANFTYVK--VRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTK 293
+ VN N TYVK VR K + ++V++ L
Sbjct: 239 TNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKL------------------------- 273
Query: 294 VSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADN 353
QD E+ E F G L+GK + ++
Sbjct: 274 -----SFQDREIEVIEE-----------FKGEKLIGKYVRNPVSGDE------VIILPAE 311
Query: 354 YVTSDSGTGIVHCAPAFGEDDYRVCIENQ---------------IINKGENLIVAVDDDG 398
+V D+ TG+V PA D+ + + + N ++ ++ G
Sbjct: 312 FVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYG 371
Query: 399 CFTGKIT-----------------------------------DFSGRYVKDADKDIIEAL 423
F + G+ V++ + I + +
Sbjct: 372 DFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEM 431
Query: 424 KAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRV--ETLKEKLLDNNKQTYWVPDY 481
KG + +I WF+ KEK ++ +P+
Sbjct: 432 LEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPET 491
Query: 482 VKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLH 541
+ +F ++ A +R GTPLP W E E + ++ +
Sbjct: 492 RR-AQFEAIIDWLDKKACARKIGLGTPLP-WDPEWVIESLSDSTIY------------MA 537
Query: 542 RHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPF----------ENAEH 591
+ I + + + + FD F E E
Sbjct: 538 YYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEE 597
Query: 592 FENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGK-PAFRNLICNGLVLAEDGKKMSKKLK 650
FE +P + G D + A+F + + + NG +G+KMSK
Sbjct: 598 FEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGT-LEGQKMSKSKG 656
Query: 651 NYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW-YNAYRFLVQ 709
N + ++ I + GAD +RLY+++ +++ V + K + Y +
Sbjct: 657 NVLNFIDAIEENGADVVRLYIMSLAEH-DSDFDWRRKEVGKLRK--QIERFYELISQFAE 713
Query: 710 NAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLL 769
+ +E +D+W+ + +E +R T V +
Sbjct: 714 YEVKGNVE----------------LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAF 757
Query: 770 KFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNM 829
+ N Y+R R D L + ++MAPFTP E L++ +
Sbjct: 758 YSIMNDLRWYLRRTEGR--------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 246 bits (630), Expect = 2e-75
Identities = 64/241 (26%), Positives = 95/241 (39%), Gaps = 59/241 (24%)
Query: 202 VPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKI 257
+ DP + V FP+ EKA+ + WTTTPWTLP N+A V+ +TY + +
Sbjct: 1 MQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG--DEA 58
Query: 258 YVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEK 317
++ E L E
Sbjct: 59 LILEEGLGRKLLGEG------------------------------------------TPV 76
Query: 318 LGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRV 377
L F G L G Y P + E + V+ +YV+ + GTGIVH APAFG +D
Sbjct: 77 LKT-FPGKALEGLPYTPPYPQALEK---GYFVVLADYVSQEDGTGIVHQAPAFGAEDLET 132
Query: 378 CIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTH 437
+ L+ VD++G + F G Y ++A++ I+ L+ +G L K S H
Sbjct: 133 ARVYGLP-----LLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKEESYLH 185
Query: 438 S 438
S
Sbjct: 186 S 186
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 227 bits (581), Expect = 7e-62
Identities = 139/576 (24%), Positives = 235/576 (40%), Gaps = 84/576 (14%)
Query: 349 VIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGE--NL--IVAVDDDGCFTGKI 404
++AD V D GTG + PA DY + GE L + ++ +G G+
Sbjct: 254 ILADPAVEKDFGTGALKVTPAHDPLDYEI---------GERHGLKPVSVINLEGRMEGER 304
Query: 405 T--DFSG--RYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVR 460
G R+ +A + +E + G LVK T + C R TP+ Y P W++R
Sbjct: 305 VPEALRGLDRF--EARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLR 362
Query: 461 VETLKEKLLDN--NKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGE 518
+ L E++L +VP+ +K +WLEN +DW +SR +WG +P W ED +
Sbjct: 363 MRPLAEEVLKGLRRGDIAFVPERW-KKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQ 421
Query: 519 EIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMP 578
+ V LE + + + P L+R EDVFD WF S P
Sbjct: 422 AVNVPRPERYLEDPT---------------SCEACGSPR---LKRDEDVFDTWFSSALWP 463
Query: 579 YAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVL 638
+ + +P E + + +PG + G D W + V G+ F+ ++ +GLVL
Sbjct: 464 LSTLGWPEETED-LKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVL 522
Query: 639 AEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI--NSPVVRAETLRFKKDGV-----FA 691
E G+KMSK N P+E++ YGADALR LI + + +R + FA
Sbjct: 523 DEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATG---GQDIRLDLRWLEMARNFA 579
Query: 692 VVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHF 751
K YNA RF++ + + + + + D+++ S V
Sbjct: 580 -NK-----LYNAARFVLLSRE-------------GFQAKEDTPTLADRFMRSRLSRGVEE 620
Query: 752 VRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTS 810
+ E L + + + + Y+ + LK + L TL VL
Sbjct: 621 ITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH-----TLRTLEEVLAVL 675
Query: 811 CKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLA 870
K++ P PF T LYQ + +E + ++P+ RDE E++ + +
Sbjct: 676 LKLLHPMMPFLTSELYQAL-----TGKEELALEAWPEPG-GRDEEAERAFEALKQAVTAV 729
Query: 871 RNIRERHNKPLKSPLREMIVVHPDADFLDDIAGKLK 906
R ++ P +R + + + +++ +
Sbjct: 730 RALKAEAGLPPAQEVR--VYLEGETAPVEENLEVFR 763
Score = 81.4 bits (202), Expect = 1e-15
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 33/246 (13%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
K + E K E W + F + P +V + PP TG H GH L +++D
Sbjct: 5 KAYDPKSVEPKWAEKWAK-NPFVANPKSGK--PPFVIFMPPPNVTGSLHMGHALDNSLQD 61
Query: 68 IVTRYQSMMGFHVTRRFGWDCH-GLPVENEIDKTL---GIKRRDDVFQMGIDKYNEACRS 123
+ RY+ M GF G D H G+ + +++ L G R D +G +K+ E
Sbjct: 62 ALIRYKRMRGFEAVWLPGTD-HAGIATQVVVERLLLKEGKTRHD----LGREKFLE---- 112
Query: 124 IVTRYVEEWEQ----IIT----RTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175
V +W++ I R G D+ + TMD K +V + F++ Y +GL Y+
Sbjct: 113 ----RVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168
Query: 176 GFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSN 235
+++ + C+T LS+ E + P + + + G +A T P T+ ++
Sbjct: 169 APRLVNWCPRCETTLSDLEV--ETEPTPGKLYTLRYEVEGGGF--IEIA-TVRPETVFAD 223
Query: 236 LALCVN 241
A+ V+
Sbjct: 224 QAIAVH 229
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 140 bits (355), Expect = 2e-37
Identities = 41/289 (14%), Positives = 71/289 (24%), Gaps = 93/289 (32%)
Query: 203 PDPEIMVSFPIVGDP---EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYV 259
P+ F K VA T P T+ V+ Y G ++
Sbjct: 13 VAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFD-AGNGDYFI 71
Query: 260 VAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLG 319
E + + Y+ L
Sbjct: 72 TTERAFKNMSFQNLT-----------------------------------PKRGYYKPLF 96
Query: 320 EVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCI 379
+G L+G + + + K RV+ V + GTG+V C P+ DD+
Sbjct: 97 T-INGKTLIGSRIDAPYAVNKNL-----RVLPMETVLATKGTGVVTCVPSDSPDDFVTTR 150
Query: 380 ENQIINKGENL-----------IVAVDDDGCFTGK------------------------- 403
+ + + IV + G +
Sbjct: 151 DLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAY 210
Query: 404 ----------ITDFSGRYVKDADKDIIEALKAKGR--LVKTGSLTHSYP 440
I + G V+DA + + L +G + L H +
Sbjct: 211 KEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHHH 259
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 136 bits (344), Expect = 2e-35
Identities = 41/328 (12%), Positives = 94/328 (28%), Gaps = 54/328 (16%)
Query: 157 MESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVG- 215
+E + + ++ +G + N + + Y + + I
Sbjct: 16 LELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQV 75
Query: 216 DPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKS 275
D K +A T P T+ V Y ++ +V+E + + +
Sbjct: 76 DNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINK-DEVIIVSEHAAVNMAHQGLNN 134
Query: 276 SAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPL 335
+ + + + E SG+ L+
Sbjct: 135 N---------------------------------KPFGELDFISE-ISGSDLLLATVRAP 160
Query: 336 FDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVD 395
+++ V+ + D GTGIV P+ DDY + G VD
Sbjct: 161 LSPYEQ-----IFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVD 215
Query: 396 DDGCFTG-------KITDFSGRYVKDA-DKDIIEALKAKGRLVKTGSLTHSYPFCWRSDT 447
+I D ++ + +L + +L + + Y + +
Sbjct: 216 VGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEIC--YTKGFYTGI 273
Query: 448 PLI--YRAVPSWFVRVETLKEKLLDNNK 473
+ + + ++ ++ L+ NN+
Sbjct: 274 MKMGPFAGQSVKDCK-QSCRDLLVQNNQ 300
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 116 bits (292), Expect = 4e-29
Identities = 36/282 (12%), Positives = 70/282 (24%), Gaps = 65/282 (23%)
Query: 197 QNYKDV--PDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYT 254
Q Y + E S + VA T P T+ V + Y+
Sbjct: 5 QEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETV-N 63
Query: 255 GKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNES 314
G I++ + + + ++N
Sbjct: 64 GDIFICTQKAARNMSYQGFT-----------------------------------KDNGV 88
Query: 315 YEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDD 374
+ E G ++G +K V+ + D GTG+V P+ DD
Sbjct: 89 VPVVKE-LMGEEILGASLSAPLTSYKVI-----YVLPMLTIKEDKGTGVVTSVPSDSPDD 142
Query: 375 YRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDAD-------KDIIEALKAKG 427
+ + K G + F V + I + LK +
Sbjct: 143 IAALRD--LKKKQALR----AKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQS 196
Query: 428 RLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLL 469
+ + + + + V+ K + +
Sbjct: 197 --------QNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKV 230
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 68.7 bits (169), Expect = 8e-12
Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 58/261 (22%)
Query: 600 FIAEGLDQTRGWFYTLMV-LSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEV 658
F G + R W + + G+ ++ KMSK N P +
Sbjct: 594 FYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVM 653
Query: 659 INDYGADALRLY-LINSPVVRAETLRFKKDGVFAVVKDVFLPWYN-----AYRFLVQNAK 712
+ YGAD +RL+ + SP L W A RFL K
Sbjct: 654 VERYGADTVRLFMMFASPADMT------------------LEWQESGVEGANRFL----K 691
Query: 713 RL-----EIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEG-YRLYTVVP 766
R+ E L++ L ++ L + ++ + V ++ T +
Sbjct: 692 RVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKT----IAKVTDDIGRRQTFNTAIA 747
Query: 767 YLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALY 826
+++ ++ L D + + LL +++ PFTP L+
Sbjct: 748 AIMELMNKLAKA--------------PTDGEQDRALMQEALLAVVRMLNPFTPHICFTLW 793
Query: 827 QNMRKVGSGSEESIHFCSFPK 847
Q + E I +P
Sbjct: 794 QEL-----KGEGDIDNAPWPV 809
Score = 60.3 bits (147), Expect = 3e-09
Identities = 48/194 (24%), Positives = 67/194 (34%), Gaps = 71/194 (36%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYV---FYDGPPFATGLPHYGHILAGT 64
+ + E K+ W+ F+ D ++ + Y P+ +G H GH+ T
Sbjct: 23 EQYRPEEIESKVQLHWDEKRTFEVTEDESK-EKYYCLSML----PYPSGRLHMGHVRNYT 77
Query: 65 IKDIVTRYQSMMGFHVTRRFGWDCHGLPVEN---------------EID------KTLGI 103
I D++ RYQ M+G +V + GWD GLP E I K LG
Sbjct: 78 IGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGF 137
Query: 104 KRRDDVFQMGIDKYNEACRSIVTRYVE--EWEQIITRTGRWIDFRNDYKTMDLKFMESVW 161
G D R + T E WEQ
Sbjct: 138 ---------GYDW----SRELATCTPEYYRWEQ-------KF------------------ 159
Query: 162 WVFAQLYEKGLVYK 175
F +LY+KGLVYK
Sbjct: 160 --FTELYKKGLVYK 171
Score = 42.2 bits (100), Expect = 0.001
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 495 RDWAVSRSRFWGTPLPVWTSEDGEEIIV 522
RDW VSR R+WG P+P+ T EDG +
Sbjct: 438 RDWGVSRQRYWGAPIPMVTLEDGTVMPT 465
Score = 33.7 bits (78), Expect = 0.46
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 442 CWRSDTPLIYRAVPSWFVRVETLKEKLLDN-NKQTYWVPDYVK 483
CWR DT + + +P WF+++ ++LL++ +K +W PD VK
Sbjct: 196 CWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHW-PDTVK 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 1e-11
Identities = 109/709 (15%), Positives = 204/709 (28%), Gaps = 240/709 (33%)
Query: 89 HGLPVE-NEIDKTLGIKRRD------DVFQMGIDKYN--EACRSIVTRYVEEWEQII--- 136
H + E E + +D D F D + + +SI+++ EE + II
Sbjct: 5 HHMDFETGEHQ----YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSK 58
Query: 137 ---TRTGR--WIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLS 191
+ T R W + + M KF+E V Y F + P T + P
Sbjct: 59 DAVSGTLRLFWT-LLSKQEEMVQKFVEEV---LRINY-------KFLMSPIKTEQRQPSM 107
Query: 192 NFEAGQNYKDVP--DPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKV 249
+D D ++ + V + Y+K+
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYN-VSRLQP--------------------------YLKL 140
Query: 250 RNKYTGKIYVVAESRLSALPSEKPKSSAA-NGPGGDSKKSSSKTKVSSGKKAQDGELARS 308
R AL +P + +G G SGK +A
Sbjct: 141 RQ---------------ALLELRPAKNVLIDGVLG------------SGKTW----VALD 169
Query: 309 AENNESYEKL--GEVFSGAYL-VGKKYEP--LFDYFKEFSDVAFRVIADNYVTSDSGTGI 363
+ + ++F +L + P + + ++ I N+ + +
Sbjct: 170 VCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHS-- 220
Query: 364 VHCAPAFGEDDYRVCIENQIINKG--ENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIE 421
+ + + +K L+V + + V++
Sbjct: 221 --SNIKLRIHSIQAELRRLLKSKPYENCLLV-LLN---------------VQN--AKAWN 260
Query: 422 ALKAKGR-LVKT--GSLTHSYPFCWRSDTPLIYRAVP-----------SWF-VRVETLKE 466
A + L+ T +T + L + ++ + R + L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 467 --------------KLLDNNKQT--YWVPDYVKEKRFHNWLE---NARDWAVSRSRFW-- 505
+ + + T W +V + +E N + A R F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 506 -----GTPLP------VWTSEDGEEIIVVDSVDKLEKLS--------------------- 533
+P +W +++VV V+KL K S
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 534 --GEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEH 591
E + LHR +DH IP + + + ++ F Y++I + +N EH
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHHLKNIEH 486
Query: 592 FE--NNFPGQFIAEGLDQTRGWF-YTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKK 648
E F F LD + + STA + N + + K
Sbjct: 487 PERMTLFRMVF----LDF--RFLEQKIRHDSTAWNASGSILNTL-------QQLKFYKPY 533
Query: 649 L-KNYPSPVEVINDYGADALRLY---LINSP---VVRAETLRFKKDGVF 690
+ N P ++N D L LI S ++R L + + +F
Sbjct: 534 ICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDLLRI-ALMAEDEAIF 580
Score = 62.6 bits (151), Expect = 7e-10
Identities = 100/672 (14%), Positives = 196/672 (29%), Gaps = 196/672 (29%)
Query: 572 FESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTA----LFGKP- 626
FE+G Y Y + F +NF + + D + +LS +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKS------ILSKEEIDHIIMSKD 59
Query: 627 ---AFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYG--ADALRLYLINSPVVRAE 680
L L ++M +K EV+ +Y ++ P +
Sbjct: 60 AVSGTLRLF---WTLLSKQEEMVQKFVE-----EVLRINYKFLMSPIK-TEQRQPSMMTR 110
Query: 681 TLRFKKDGVFAVVKDVFLPWYNAYRF-----LVQNAKRLEIEGGAPFIPLD--------- 726
++D ++ VF YN R L Q L + +D
Sbjct: 111 MYIEQRDRLYNDN-QVFAK-YNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSGKTW 165
Query: 727 LA--TLQKSSNVLDQ------WINSATQSLVHFVRQEMEGYRLYT-VVPYLLKFLDNLTN 777
+A S V + W+N + V + ++ +L + P D+ +N
Sbjct: 166 VALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSN 222
Query: 778 IYVRFN--RKRLKGRSGEDDCRIALSTLYNV--------LLTSCKVMAPFTPFFTEALYQ 827
I +R + + L+ L L NV SCK++ T Q
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL------LTTRFKQ 276
Query: 828 NMRKVGSGSEESI----HFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKS 883
+ + + I H + +E K L L + + +P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKS--------L-------LLKYL---DCRPQDL 318
Query: 884 PLREMIVVHPDADFLDDIAGKLKEYV-----LEELNVRSLVPCNDTLKYASLRA-EPDFS 937
P RE++ +P L IA +++ + + +N L ++ +SL EP
Sbjct: 319 P-REVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKL---TTIIE-SSLNVLEPA-- 369
Query: 938 VLGKRLGRSMGVVAKEVKAMSQE-DILAFEKSGEVT--IATHCLQLADIKVVREFKRPDG 994
+++ + V + ++ F+ + + + ++ K+P
Sbjct: 370 -EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-----KQPKE 423
Query: 995 VTEKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEPTDVVEVY--F 1052
T + I + + + + L + I V+ Y
Sbjct: 424 ST------------ISIPSIYLEL--------KVKLENEYALHRSI-------VDHYNIP 456
Query: 1053 ESLDEDKSVSQQVLNSQEHYIRDAIGSPLLPSSTLPSHAVIIG-EESFDGIS----NLSF 1107
++ D D + + Y IG H I E + F
Sbjct: 457 KTFDSDDLIPPYLDQ----YFYSHIGH----------HLKNIEHPERMTLFRMVFLDFRF 502
Query: 1108 ---KISLTRPALVFNSDSI-----LALYSG-------------NTM--FLQGLQMYLLSR 1144
KI A + + L Y N + FL ++ L+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 1145 DHSNLKSEFQLG 1156
+++L ++
Sbjct: 563 KYTDL---LRIA 571
Score = 61.0 bits (147), Expect = 2e-09
Identities = 86/682 (12%), Positives = 180/682 (26%), Gaps = 236/682 (34%)
Query: 404 ITDFSGRYVKDAD-KDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVE 462
++ F +V + D KD+ + K+ ++ + H I +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDH------------IIMS-KDAVSGTL 65
Query: 463 TLKEKLLDNNKQTYWV-------PDYVKEKRFHNWLENA------------RDWAVSRSR 503
L LL ++ +Y +L + R + R R
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 504 FWG-----TPLPVWTSEDGEEI------------IVVD-------SVDKLEKLSGEKIFD 539
+ V + ++ +++D + L+ K+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 540 LHRHNIDHITIPSSRGPEFGLLRRIEDV---FDCWFESGSMPYAYIHYPFENAEHFENNF 596
I + + + PE +L ++ + D + S S + I + +
Sbjct: 179 KMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 597 PGQFIAEGLDQTRGWFYTLMVL-----STALFGKPAFRNLICNGLVLAEDGKKMSKKLKN 651
++ + L+VL + A AF NL C L+
Sbjct: 238 ---LKSKPYENC------LLVLLNVQNAKAW---NAF-NLSCKILLTTRF---------- 274
Query: 652 YPSPVEVINDYGADA---LRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLV 708
+V + A + L + + E + ++L
Sbjct: 275 ----KQVTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLL-------------KYLD 312
Query: 709 QNAKRL--EIEGGAPFIPLDL--ATLQKSSNVLDQWINSATQSLVHFVR------QEMEG 758
+ L E+ P L + +++ D W + L + + E
Sbjct: 313 CRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 759 YRLYTVVPYLLKFLDNLTNIYVRFNRKRLK---GRSGEDDCRIALSTLYNVLLTSCKVMA 815
+++ L F + +I L + D + ++ L+ L +
Sbjct: 372 RKMFD---RLSVFPPS-AHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--- 420
Query: 816 PFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRE 875
E+ SI + + K + L R+I +
Sbjct: 421 -----PKESTI------------SIPSIYL-ELKVKLENEYA-----------LHRSIVD 451
Query: 876 RHNKPLKSPLREMIVVHPD----------------AD--------FLDD--IAGKLKEYV 909
+N P ++I + D + FLD + K++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH-- 509
Query: 910 LEELNVRSLVPCNDTL----KYAS--LRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDIL 963
+ + +TL Y +P + L IL
Sbjct: 510 -DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL-------------------VNAIL 549
Query: 964 AF-EKSGEVTIATHC---LQLA 981
F K E I + L++A
Sbjct: 550 DFLPKIEENLICSKYTDLLRIA 571
Score = 42.1 bits (98), Expect = 0.001
Identities = 54/385 (14%), Positives = 107/385 (27%), Gaps = 128/385 (33%)
Query: 866 IIDLARNIRERHNKPLKSPLREMIVVHPDAD--------------------FLDDIAGKL 905
+ D+ ++I L + I++ DA F++++
Sbjct: 38 VQDMPKSI-------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 906 KEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILAF 965
++++ + P T Y R RL V AK
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQR---------DRLYNDNQVFAK------------- 128
Query: 966 EKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDA-AGDG-DVLVILDLRPD--ESLF 1021
V+ L+L + + E + V ID G G + + +
Sbjct: 129 ---YNVSRLQPYLKL--RQALLELRPAKNVL---IDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 1022 EAGV----------AREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEH 1071
+ + V+ +QKL +I + D ++ + ++S +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------WTSRSDHSSNIKLR-IHSIQA 232
Query: 1072 YIRDAIGSPLLPSSTLP----SHAVIIGEESFDGISNLSFKISL-TRPALVFN------- 1119
+R + S + L +A +F+ LS KI L TR V +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAW--NAFN----LSCKILLTTRFKQVTDFLSAATT 286
Query: 1120 ----------------SDSILALYSGNTMF------LQG--LQMYLLS---RDHSNLKSE 1152
S+L Y L ++ +++ RD
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 1153 FQLGNG----KIMVDCIENQPPVNL 1173
++ N I+ + P
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEY 371
Score = 37.9 bits (87), Expect = 0.023
Identities = 75/556 (13%), Positives = 145/556 (26%), Gaps = 197/556 (35%)
Query: 1 MEEVS-EGKDFSFSRE--EEKILEFWNSIDAFKTQLDRTRCQP--------------EYV 43
M + E + S E+ +N F + + +R QP + V
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 44 FYDGPPFATGLPHYG-HILAG-TIKDIVTRYQSMMGFHVTRRFGW----DCH-------- 89
DG G G +A + Q M F + F W +C+
Sbjct: 154 LIDGVL---G---SGKTWVALDVCLSY--KVQCKMDFKI---F-WLNLKNCNSPETVLEM 201
Query: 90 --------GLPVENEIDKTLGIKRR------------------------DDVFQMG-IDK 116
+ D + IK R +V +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 117 YNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176
+N +C+ ++T TR + DF + T + ++ K L
Sbjct: 262 FNLSCKILLT----------TRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSL---- 306
Query: 177 FKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFP----IVGDPEKAAFVAWTTTP--- 229
L + +D+P E++ + P I+ + + W
Sbjct: 307 -------------LLKY-LDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 230 -WTLPSNLALCVNANFTYVKVRNKYTGKIYV------VAESRLSAL----PSEKP----- 273
L + + +N + R + ++ V + LS +
Sbjct: 352 CDKLTTIIESSLN-VLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 274 ---KSSAANGPGGDSKKSSS---------KTKVSS--------------GKKAQDGELAR 307
K S K+S+ K K+ + K +L
Sbjct: 410 KLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 308 SAENNESYEKLGEVFSGAY-LVGKKYEPLFDYFKE-FSDVAF---RVIADNYVTSDSGTG 362
+ Y +G + L ++ F+ F D F ++ D
Sbjct: 467 PYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD---------S 511
Query: 363 IVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD---FSGRY----VKDA 415
A + Q + + I D+D + + F + +
Sbjct: 512 TAWNASGSILNTL------QQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 416 DKDIIE-ALKAKGRLV 430
D++ AL A+ +
Sbjct: 564 YTDLLRIALMAEDEAI 579
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 68.0 bits (167), Expect = 2e-11
Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 46/221 (20%)
Query: 633 CNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLY-LINSPVVRAETLRFKKDGVFA 691
+G + MSK N + + GAD R+ L +P
Sbjct: 626 EDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENE------------ 673
Query: 692 VVKDVFLPWYN-----AYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQ 746
+ W A+RFL R E + ++ D+ +
Sbjct: 674 ------MVWTEEGVQGAWRFL-NRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLH 726
Query: 747 SLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNV 806
+ V +++E R T + L++FL+ L + K R R A+
Sbjct: 727 ETLKKVTEDLEALRFNTAIAALMEFLNALY--------EYRKDRPVTPVYRTAIRYY--- 775
Query: 807 LLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPK 847
+++ PF P E L+ +S+ +P+
Sbjct: 776 ----LQMLFPFAPHLAEELWHWF------WPDSLFEAGWPE 806
Score = 58.4 bits (142), Expect = 1e-08
Identities = 49/205 (23%), Positives = 75/205 (36%), Gaps = 62/205 (30%)
Query: 10 FSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYV---FYDGPPFATGLPHYGHILAGTIK 66
++ E K FW K + +YV F P+ +G H GH+ T+
Sbjct: 4 YNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMF----PYPSGDLHMGHLKNYTMG 59
Query: 67 DIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKR---------------RDDVFQ 111
D++ R++ M G+ V GWD GLP EN +K ++ +
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENA-----ALKFGVHPKDWTYANIRQAKESLRL 114
Query: 112 MGIDKYNEACRSIVTRYVE--EWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYE 169
MGI Y+ R + T E W Q WI F +++E
Sbjct: 115 MGI-LYDWD-REVTTCEPEYYRWNQ-------WI--------------------FLKMWE 145
Query: 170 KGLVYKGFKVMP--YSTGCKTPLSN 192
KGL Y+ + C+T L+N
Sbjct: 146 KGLAYR--AKGLVNWCPKCQTVLAN 168
Score = 42.6 bits (101), Expect = 9e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 495 RDWAVSRSRFWGTPLPVWTSEDGEEIIV 522
RDW +SR R+WGTP+P+ E + V
Sbjct: 420 RDWLISRQRYWGTPIPMVHCEACGVVPV 447
Score = 31.0 bits (71), Expect = 2.8
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 36/140 (25%)
Query: 303 GELARSAENNESYEKLGEVFSGAY----LVGKKYEPLFDYFKEFSDVAFRVIADNYVTSD 358
E+ R AE E K G VF GAY G++ P++ A +YV
Sbjct: 291 TEIERQAEGRE---KTG-VFLGAYALNPATGERI-PIW-------------TA-DYVLFG 331
Query: 359 SGTGIVHCAPAFGEDD------YRVCIENQIINKGENLIVAVDDDGCFTGKIT-----DF 407
GTG + PA + D + + I+ I GE L + + F
Sbjct: 332 YGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPL--PEPLERAYEEPGIMVNSGPF 389
Query: 408 SGRYVKDADKDIIEALKAKG 427
G ++ + +I L+ KG
Sbjct: 390 DGTESEEGKRKVIAWLEEKG 409
Score = 30.6 bits (70), Expect = 4.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 442 CWR-SDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKE 484
CWR DTP+ R + W++R+ E+LL + + W P+ VK
Sbjct: 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW-PEKVKA 218
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 2e-09
Identities = 89/570 (15%), Positives = 150/570 (26%), Gaps = 205/570 (35%)
Query: 433 GSLTHSYPFCWRSDTPLIYRAVP--SWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNW 490
GSL H VP S+F L+E +F+
Sbjct: 14 GSLEHVLL-------------VPTASFF-IASQLQE-------------------QFNKI 40
Query: 491 LENARDWAVSRSRFWGTPLPVWTSEDGEEII------VVDSVDKLEKLSGEKI------- 537
L + F P T+ E++ V V+ + +++
Sbjct: 41 LPEPTE------GFAADDEP--TTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 538 FD---LHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSM---PYAYIHYP--FENA 589
F+ L ++I H L + +++ + + M P+ F
Sbjct: 91 FENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 590 EHFENN------FPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN-GLVLAEDG 642
E N F GQ G +F L L +LI L+E
Sbjct: 150 G--EGNAQLVAIFGGQ----GNTDD--YFEELRDLYQT--YHVLVGDLIKFSAETLSELI 199
Query: 643 KKMSKKLKNYPSPVEV---INDYGADALRLYLINSPV---------------------VR 678
+ K + + + + + + YL++ P+
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 679 AETLRFKKDGVFAVVKDVFLP--------W-------YNAYRFL------VQNA------ 711
LR G + + W A L A
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 712 ------KRLEIEGGAPFIP------LDLATLQKSSNVLDQWINSATQ---SLV----HFV 752
LE G P P L +Q N + + + Q SLV + V
Sbjct: 320 PPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 753 RQEMEGYR--LYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALS----TLYNV 806
+ G LY + L RK K SG D RI S N
Sbjct: 379 ---VSGPPQSLYGLNLTL---------------RK-AKAPSGLDQSRIPFSERKLKFSNR 419
Query: 807 LLTSCKVMAPF-TPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMT 865
L V +PF + A + I K+ K + ++ +
Sbjct: 420 FLP---VASPFHSHLLVPA------------SDLI-----NKDLVKNNVSFNAKDIQ-IP 458
Query: 866 IIDL--ARNIRERHNKPLKSPLREMIVVHP 893
+ D ++R + + + + I+ P
Sbjct: 459 VYDTFDGSDLRV-LSGSISERIVDCIIRLP 487
Score = 54.7 bits (131), Expect = 2e-07
Identities = 94/599 (15%), Positives = 166/599 (27%), Gaps = 210/599 (35%)
Query: 721 PFIPLDLATLQKSSNV-LDQWINSATQSLVHFVRQEMEGYRLY-------TVVPYLLKFL 772
P L +L+ V + A+Q F + E + T + KFL
Sbjct: 8 PLT-LSHGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 773 DNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKV 832
YV + + G+ D VL T F L N
Sbjct: 66 G-----YV--SSLVEPSKVGQFD---------QVLNLC------LTEFENCYLEGN---- 99
Query: 833 GSGSEESIH--FCSFPKEEGKRDERIEQSVLR--MMTIIDLARNIRERHNKPL------- 881
IH +E + + +++ + I R ++ N L
Sbjct: 100 ------DIHALAAKLLQENDTTLVKT-KELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 882 KSP-----------------LREMIVVHPD--ADFLDDIAGKLKEYVLEELNVRSL---- 918
+ LR++ + D + A L E + L+ +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 919 ------------VPCNDTLKYA--SLRAEP--------DFSVLGKRLGRSMGVVAKEVKA 956
P D L S P + V K LG + G + +K
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 957 MS--QEDILA------------FEKSGEVT------IATHCLQLADIKVVREFKRPDGVT 996
+ + ++ F S I C + + P +
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-----PPSIL 324
Query: 997 EKEIDAAGDGD---VLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEPTDVVEVYFE 1053
E ++ +G +L I +L + +V + + K
Sbjct: 325 EDSLE-NNEGVPSPMLSISNLTQE----------QVQDYVNKTNS--------------- 358
Query: 1054 SLDEDKSVSQQVLNSQEHYIRDAIGSPLLPSS------TLPSHAVIIGEES----FDG-- 1101
L K V ++N ++ + + P P S TL G + F
Sbjct: 359 HLPAGKQVEISLVNGAKNLV---VSGP--PQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 1102 --ISNLSF-KISLTRPALVFNSDSILALYSGNTMFLQGLQMYLLSRDHSNLK-------- 1150
SN F ++ P F+S +L + + + L +S + +++
Sbjct: 414 LKFSN-RFLPVAS--P---FHS-HLLV--PASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 1151 -SEFQLGNGKI---MVDCIENQPPVN------------LVLGEHVFLSVGDYYVRTKTG 1193
S+ ++ +G I +VDCI PV L G +G R K G
Sbjct: 465 GSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Score = 51.2 bits (122), Expect = 2e-06
Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 65/226 (28%)
Query: 837 EESIHFCSFPKEEGKRDERIEQSVLRMM--TIIDLARNIRERHNKPLKSPLREMIVVHPD 894
+IHF G++ +RI ++ M+ TI+D + E+ K +
Sbjct: 1671 NLTIHF------GGEKGKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 895 ADFLDD-----IAGKLKEY-VLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMG 948
L A L E E+L + L+P + T +A G S+G
Sbjct: 1724 -GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT--FA---------------GHSLG 1765
Query: 949 VVAKEVKAMSQEDILAFEKSGEVTIATHCLQLAD-IKVVREFKRPDGVTEKEI---DAAG 1004
E A LA +V + + ++VV F R G+T + D G
Sbjct: 1766 ----EYAA------LA--SLADV------MSIESLVEVV--FYR--GMTMQVAVPRDELG 1803
Query: 1005 DGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEPTDVVEV 1050
+ ++ + P A ++E + Q + +++ +VE+
Sbjct: 1804 RSNY-GMIAINPGR--VAASFSQEAL---QYVVERVGKRTGWLVEI 1843
Score = 50.0 bits (119), Expect = 5e-06
Identities = 47/271 (17%), Positives = 80/271 (29%), Gaps = 99/271 (36%)
Query: 522 VVDSVDK-LEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYA 580
V + D + G I D+ +N ++TI G E G +RI + + +M +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTI--HFGGEKG--KRIRENYS------AMIF- 1693
Query: 581 YIHYPFENAEHFENNFPG------QFIAEG----LDQTRGWFYT---LMVLSTALFGKPA 627
+ E F + L T+ +T L ++ A A
Sbjct: 1694 --ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ---FTQPALTLMEKA-----A 1743
Query: 628 FRNLICNGLVLAEDGKKMSKKLKNYPSPV------EVINDYGA-----------DALRL- 669
F L G L + E Y A + +
Sbjct: 1744 FE-------DLKSKG------LIPADATFAGHSLGE----YAALASLADVMSIESLVEVV 1786
Query: 670 ----YLINSPVVRAETLRFKKDGVFAVVKDVFLPWYN--AYRFLVQNAKR-----LEI-- 716
+ V R E R G+ A+ ++ A +++V+ + +EI
Sbjct: 1787 FYRGMTMQVAVPRDELGR-SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 717 ---EG------GAPFIPLDLATLQKSSNVLD 738
E G DL L +NVL+
Sbjct: 1846 YNVENQQYVAAG------DLRALDTVTNVLN 1870
Score = 47.7 bits (113), Expect = 2e-05
Identities = 99/637 (15%), Positives = 168/637 (26%), Gaps = 247/637 (38%)
Query: 27 DAFKTQL----------DRTRCQPEYV-----FYDGPPFATGLPHYGHILAGTIKDIVTR 71
+ F L D E V + + + + +L + +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---- 90
Query: 72 YQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEAC-------- 121
F + G D H L + + + + ++ I Y A
Sbjct: 91 ------FE--NCYLEGNDIHALAAKLLQENDTTLVKTKEL----IKNYITARIMAKRPFD 138
Query: 122 ---RSIVTRYVEEWE-QIITRTGRWIDF-----RNDYKTMDLKFMESVWWVFAQLYEKGL 172
S + R V E Q++ I F +DY F E LY+
Sbjct: 139 KKSNSALFRAVGEGNAQLVA-----I-FGGQGNTDDY------FEE-----LRDLYQ--- 178
Query: 173 VYKGF----------KVMPYSTGCKTPLSNFEAG-------QNYKDVPDPEIM----VSF 211
Y + F G +N + PD + + +S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 212 PIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSE 271
P++G + T FT ++R+ G ++ ++A+
Sbjct: 239 PLIG---VIQLAHYVVT----------AKLLGFTPGELRSYLKG-ATGHSQGLVTAVAI- 283
Query: 272 KPKSSAANGPGGDSKKSSSKTKVS----SGKKAQD--GELARSAENNESYEKLGEVFSGA 325
A +S S + ++ G + + + E + E
Sbjct: 284 ------AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 326 YLV--GKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQI 383
L E + DY + N PA +V I +
Sbjct: 338 MLSISNLTQEQVQDYVNKT----------N-----------SHLPA----GKQVEI--SL 370
Query: 384 INKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVK--TGSLTHSYPF 441
+N +NL+V +G + + L R K +G PF
Sbjct: 371 VNGAKNLVV--------SG--------PPQS-----LYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 442 CWRSDTPLIYRAVPSW-FVRVETLKEKLLDNNKQTYWVPDYVKEKRFH-NWLENA----- 494
R + S F+ V P FH + L A
Sbjct: 410 SER-------KLKFSNRFLPVA---------------SP-------FHSHLLVPASDLIN 440
Query: 495 RDWAVSRSRFWGTPL--PVWTSEDGEEIIVVDSVDKLEKLSG---EKIFD-LHRHNID-- 546
+D + F + PV+ + DG D L LSG E+I D + R +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGS-----D----LRVLSGSISERIVDCIIRLPVKWE 491
Query: 547 --------HITIPSSRGPEFG---------LLRRIED 566
HI +FG L R +D
Sbjct: 492 TTTQFKATHIL-------DFGPGGASGLGVLTHRNKD 521
Score = 35.0 bits (80), Expect = 0.19
Identities = 54/397 (13%), Positives = 102/397 (25%), Gaps = 170/397 (42%)
Query: 112 MGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDF------RNDYKTMDLKFMESVWWVFA 165
MG+D Y S + V W + F N+ + + F
Sbjct: 1631 MGMDLYK---TSKAAQDV--WNRADNHFKDTYGFSILDIVINNPVNLTIHFGG------- 1678
Query: 166 QLYEKGL-VYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVA 224
EKG + + + M + T + + +K++ + +F +
Sbjct: 1679 ---EKGKRIRENYSAMIFETIVD---GKLKTEKIFKEINEHSTSYTF---RSEKGLLSA- 1728
Query: 225 WTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSE--KPKSSA-ANGP 281
T +T P AL + ++ L S+ P + A
Sbjct: 1729 ---TQFTQP---AL-----TL--------------MEKAAFEDLKSKGLIPADATFA--- 1760
Query: 282 GGDSKKSSSKTKVSSGKKAQDGE---LARSAENNESYEKLGEVFSGAYLVGKKYEPLFDY 338
G S + GE LA A +V S
Sbjct: 1761 -GHS--------L--------GEYAALASLA----------DVMS--------------- 1778
Query: 339 FKEFSD----VAFR-VIADNYVTSD----SGTGIVHCAPA-----FGEDDYRVCIEN--- 381
V +R + V D S G++ P F ++ + +E
Sbjct: 1779 ---IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 382 ------QIIN---KGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKT 432
+I+N + + + A G + D +++ +K + +
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAA--------GDLRAL------DTVTNVLNFIKLQK--IDI 1879
Query: 433 GSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLL 469
L S E ++ L
Sbjct: 1880 IELQKSLSL--------------------EEVEGHLF 1896
Score = 35.0 bits (80), Expect = 0.21
Identities = 54/287 (18%), Positives = 75/287 (26%), Gaps = 108/287 (37%)
Query: 343 SDVAFRVI--ADNYVTSDSG---TGIVHCAPA-----FGEDDYRVCIENQIINKGENLIV 392
S A V ADN+ G IV P FG + + EN +I
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS-----AMIF 1693
Query: 393 AVDDDGCFTGK-----ITDFSGRYVKDADKD------------------IIEALKAKGRL 429
DG + I + S Y ++K E LK+KG L
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-L 1752
Query: 430 VKTGSLT--HS---Y----------PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ 474
+ + HS Y V F R T++
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSI---ESL---VEVV---FYRGMTMQVA------- 1796
Query: 475 TYWVPDYVKEKRFHNWLENARDWAVSRSR----FWGTPLPVW----TSEDGE--EI---- 520
VP R N A++ R F L G EI
Sbjct: 1797 ---VP------RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 521 -----IVV----DSVDKLEK-LSGEKIFDLHRHNIDHITIPSSRGPE 557
V ++D + L+ K+ ID I + S E
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKL-----QKIDIIELQKSLSLE 1889
Score = 31.9 bits (72), Expect = 1.6
Identities = 44/263 (16%), Positives = 70/263 (26%), Gaps = 86/263 (32%)
Query: 44 FYDGPPFATGL-----PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEID 98
Y A + H+ +I DIV + H FG G
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH----FG----G-------- 1678
Query: 99 KTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDL-KF- 156
G + R++ M + + E+ + I FR++ + +F
Sbjct: 1679 -EKGKRIRENYSAMIFETIVDGKLK-----TEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 157 ------MESVWWVFAQLYEKGLVYKG--F---------------KVMPYSTGCK------ 187
ME F L KGL+ F VM + +
Sbjct: 1733 QPALTLMEKA--AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 188 ----TPLSNFEAGQ-NYKDVP-DPEIMVSFPIVGDPEKAAFV---AWTTTPWTLPSNLAL 238
+ E G+ NY + +P + E +V T W L
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVA---ASFSQEALQYVVERVGKRTGW-------L 1840
Query: 239 CVNANFTYVKVRNKYTGKIYVVA 261
N+ N + YV A
Sbjct: 1841 VEIVNY------NV-ENQQYVAA 1856
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 53.6 bits (129), Expect = 3e-07
Identities = 35/143 (24%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 49 PFATGLPHYGHILAGTIK-DIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRD 107
P+A G H GH+ + DI RY + G V G D HG P+ K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-------- 62
Query: 108 DVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167
G R IV + E+ + R I F +T + F +
Sbjct: 63 ----EGRS-----PREIVDEFHEQIKITFQRAK--ISFDFFGRTELPIHYKLSQEFFLKA 111
Query: 168 YEKGLVYKGFKVMPYSTGCKTPL 190
YE G + K Y K L
Sbjct: 112 YENGHLVKKVTKQAYCEHDKMFL 134
Score = 51.2 bits (123), Expect = 2e-06
Identities = 64/414 (15%), Positives = 135/414 (32%), Gaps = 93/414 (22%)
Query: 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENA-RDWA 498
P C P+ +R ++++++ E+L ++ W P+ +W+E + A
Sbjct: 171 PRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVL--SWIEEGLEERA 228
Query: 499 VSRSRFWGTPLPVWTSEDGEEIIVV--DSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGP 556
++R WG P+P+ + +++ V ++ I +I+I
Sbjct: 229 ITRDLNWGIPVPLDEEDMKGKVLYVWFEAP------------------IGYISITI---- 266
Query: 557 EFGLLRRIEDVFDCWFESGSMPYAYIHY------PFENAEH--FENNFPGQFIAEGLDQT 608
E + + ++ + IH+ PF H F +P +A G +
Sbjct: 267 EHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPF----HAIF---WPAFLMAYGKYKD 319
Query: 609 RGWF--YTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADA 666
+ L ++ N + E GKK S E ++ + AD
Sbjct: 320 EEVEAEWNLP------------YDIPANEYLTLE-GKKFSTSRNWAIWVHEFLDVFPADY 366
Query: 667 LRLYLI-NSPVVRAETLRFKKDGVF-------AVVKDVFLPWYN-AYRFLVQNAKRLE-- 715
LR YL P +D F + +++ N +R L + +
Sbjct: 367 LRYYLTTIMP--------ETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGV 418
Query: 716 IEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNL 775
+ LD L++ + V + + YR + ++
Sbjct: 419 VPERGELDELDREALEEIEKAFKE------------VGELIMNYRFKDALKRVMSLAS-F 465
Query: 776 TNIYVRFNR--KRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQ 827
N Y + K K + ++ ++ ++ PF P +E ++
Sbjct: 466 GNRYFDHKQPWKTAK--EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWH 517
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 50.7 bits (122), Expect = 2e-06
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLR 683
G P +R+L G +L DG+KMSK L N P ++ YG DALR YL LR
Sbjct: 277 GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYL----------LR 326
Query: 684 ---FKKDGVF 690
+ +D
Sbjct: 327 EIPYGQDTPV 336
Score = 46.5 bits (111), Expect = 5e-05
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 27/138 (19%)
Query: 53 GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVF 110
PH GH + D + R+ + G+ F G D HG V G +
Sbjct: 16 AEPHLGHAYTTVVADFLARWHRLDGYRT--FFLTGTDEHGETVYRAAQA-AGEDPK---- 68
Query: 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWVFAQLY 168
+ R+ W+ + D +T + + + V V ++Y
Sbjct: 69 --------AFVDRVSGRFKRAWDL--------LGIAYDDFIRTTEERHKKVVQLVLKKVY 112
Query: 169 EKGLVYKGFKVMPYSTGC 186
E G +Y G Y C
Sbjct: 113 EAGDIYYGEYEGLYCVSC 130
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 49.2 bits (118), Expect = 6e-06
Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 42/205 (20%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW 700
G+KMSK + N PV +++ +G D +R +L+ R + F +DG + +D +
Sbjct: 307 RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL-----RE--VPFGQDGSYN--EDAIIGR 357
Query: 701 YNA----------YRFLVQNAKRLE--IEGGAPFIPLDLATLQKSSNVLDQWINSATQSL 748
NA R L AK L + F D A L + +L++
Sbjct: 358 VNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLER--------- 408
Query: 749 VHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNR--KRLKGRSGEDDCRIALSTLYNV 806
VR+ + ++ + + L N Y K + ED R + LY
Sbjct: 409 ---VREHFDVPAMHLALEAIWSVL-GAANRYFSAQEPWVLRKSDAAEDQQRFR-TVLYT- 462
Query: 807 LLTSCKVMA----PFTPFFTEALYQ 827
L ++ + P P T L
Sbjct: 463 TLEVVRIASLLLQPVMPESTAKLLD 487
Score = 45.3 bits (108), Expect = 1e-04
Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 27/138 (19%)
Query: 53 GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVF 110
G+PH GH D + R++ + G+ V R+ G D HG + K GI
Sbjct: 25 GVPHIGHAYEYIATDAIARFKRLDGYDV--RYLTGTDVHGQKMAETAAK-EGIPAA---- 77
Query: 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWVFAQLY 168
E R + E+ ++ D +T D E+ ++ ++
Sbjct: 78 --------ELARRNSDVFQRLQEK--------LNISFDRFIRTSDADHYEASKAIWKRMA 121
Query: 169 EKGLVYKGFKVMPYSTGC 186
+ G +Y YS
Sbjct: 122 DAGDIYLDAYKGWYSIRD 139
Score = 33.8 bits (78), Expect = 0.39
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 441 FCWRSDTPLIYRAVPSWFVRVETLKEKLLD---NNKQTYWVPDYVK-EKRFH---NWLEN 493
+ P+ + ++F R+ ++LL + P+++ + R + +++
Sbjct: 157 IATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEH------PEFIGPDARRNEIVSFVSG 210
Query: 494 A-RDWAVSRSRF-WGTPLP--------VW 512
+D ++SR+ F WG P+P VW
Sbjct: 211 GLKDLSISRTTFDWGVPVPDHPDHVMYVW 239
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 49.2 bits (118), Expect = 7e-06
Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 23/144 (15%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+A G H GH+L D+ RYQ M G V D HG P+ + + LGI
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-LGITPEQM 85
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRW--IDFRNDYKTMDLKFMESVWWVFAQ 166
I + ++ I + N + T + + ++++
Sbjct: 86 -----IGEMSQ---------------EHQTDFAGFNISYDNYHSTHSEENRQLSELIYSR 125
Query: 167 LYEKGLVYKGFKVMPYSTGCKTPL 190
L E G + Y L
Sbjct: 126 LKENGFIKNRTISQLYDPEKGMFL 149
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 48.8 bits (116), Expect = 9e-06
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 25/167 (14%)
Query: 53 GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVF 110
PH GH+ + I D++ RY + G V G D HG V +
Sbjct: 22 AAPHIGHVYSTLITDVIGRYHRVKGERV--FALTGTDEHGQKVAEAAKQ----------- 68
Query: 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEK 170
+ Y + ++ + + +EQ+ +I +T + + V ++ +L +K
Sbjct: 69 -KQVSPY-DFTTAVAGEFKKXFEQMDYSIDYFI------RTTNEQHKAVVKELWTKLEQK 120
Query: 171 GLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDP 217
G +Y G YS ++ L+ D G
Sbjct: 121 GDIYLGRYEGWYSISDESFLTPQNITDG--VDKDGNPCKVSLESGHV 165
Score = 48.5 bits (115), Expect = 1e-05
Identities = 45/293 (15%), Positives = 94/293 (32%), Gaps = 66/293 (22%)
Query: 421 EALKAKGRLVKTGSLTHS-YPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVP 479
E+ + + S + + + ++ R+ +E+LL+ P
Sbjct: 137 ESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHAN---P 193
Query: 480 DYVKEKRFHNWL-----ENARDWAVSRSRF----WGTPLPVWTSEDGEEIIVVDSVDKLE 530
+ + + + D +VSR+R W P+P + + + V
Sbjct: 194 GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVP----GNPDHXVYV------- 242
Query: 531 KLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAE 590
D + + + + L + + + A +H
Sbjct: 243 ------WLDALTNYLTGSRLRVDESGKEVSLVDDFNELERF-------PADVH------- 282
Query: 591 HFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLK 650
I + + + ++ +LS L P + ++ +G D KK+SK L
Sbjct: 283 ---------VIGKDILKFHAIYWPAFLLSAGL---PLPKKIVAHGWWTK-DRKKISKSLG 329
Query: 651 NYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNA 703
N PVE ++G DAL+ +L+ F DG ++ + N
Sbjct: 330 NVFDPVEKAEEFGYDALKYFLLRE-------SGFSDDGDYS--DKNMIARLNG 373
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 48.0 bits (115), Expect = 2e-05
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 53 GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVF 110
+PH GH D + RY + + V F G D HGL ++ + ++ LGI +
Sbjct: 18 DVPHLGHAYTTIAADTIARYYRLRDYDV--FFLTGTDEHGLKIQKKAEE-LGISPK---- 70
Query: 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWVFAQLY 168
E R+ + WE + +T D ++ V VF + Y
Sbjct: 71 --------ELVDRNAERFKKLWEF--------LKIEYTKFIRTTDPYHVKFVQKVFEECY 114
Query: 169 EKGLVYKGFKVMPYSTGC 186
++G +Y G Y GC
Sbjct: 115 KRGDIYLGEYEGWYCVGC 132
Score = 46.8 bits (112), Expect = 3e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVF 690
+GKKMSK L N P EV+ +YG D +R +L+ R + F +DG F
Sbjct: 292 EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL-----RE--VPFGQDGDF 334
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 47.3 bits (113), Expect = 3e-05
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVF 690
G+KMSK + N P E++ YG D LR +L+ R + F +DG +
Sbjct: 318 RGEKMSKSVGNVIDPFELVERYGLDQLRYFLM-----RE--VPFGQDGSY 360
Score = 45.7 bits (109), Expect = 8e-05
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 27/138 (19%)
Query: 53 GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVF 110
G PH GH D + R+Q + G V F G D HG+ + K GI R
Sbjct: 38 GKPHIGHAYELIATDAMARFQRLNGMDV--YFLTGTDEHGIKMLQSARK-EGITPR---- 90
Query: 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWVFAQLY 168
+ + + E ++ ND +T + + ++ ++ +
Sbjct: 91 --------DLADRNTSAFRRMAEV--------LNSSNDDYIRTSEERHYKASQAIWQAMV 134
Query: 169 EKGLVYKGFKVMPYSTGC 186
G +YKG YS
Sbjct: 135 ANGDIYKGGYAGWYSVRD 152
Score = 33.8 bits (78), Expect = 0.40
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK-EKRFH---NWLENA- 494
TP+ + S+F R+ ++KLLD + P ++ +R + +++++
Sbjct: 168 VRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENN---PGFIMPAERRNEIVSFVKSGL 224
Query: 495 RDWAVSRSRF-WGTPLP--------VW 512
+D ++SR+ F WG P+P VW
Sbjct: 225 KDLSISRTTFDWGIPVPGDEKHVMYVW 251
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 46.9 bits (112), Expect = 4e-05
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLR---FKKDGVF 690
D KK+SK L N PVE ++G DAL+ +L +R F+ DG +
Sbjct: 336 DHKKISKSLGNAFDPVEKAKEFGIDALKYFL----------MRESNFQDDGDY 378
Score = 43.4 bits (103), Expect = 4e-04
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 53 GLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF--GWDCHGLPVENEIDKTLGIKRRDDVF 110
PH GH+ + I D++ RY + G V G D HG V K
Sbjct: 39 ASPHIGHVYSTLIVDVLGRYHRVKGEEV--FVMTGTDEHGQKVAEAAAK----------- 85
Query: 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDY--KTMDLKFMESVWWVFAQLY 168
G+ + S+ + + + +++ +++ +Y +T + + V ++ +L
Sbjct: 86 -QGVSPM-DFTTSVSSEFKQCFQE--------MNYDMNYFIRTTNPTHEKLVQDIWKKLA 135
Query: 169 EKGLVYKGFKVMPYSTGC 186
KG +Y G YS
Sbjct: 136 AKGDIYLGKYEGWYSVSD 153
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 42.1 bits (100), Expect = 2e-04
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 349 VIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGE--NL--IVAVDDDGCFTGKI 404
++AD V D GTG + PA DY + GE L + ++ +G G+
Sbjct: 63 ILADPAVEKDFGTGALKVTPAHDPLDYEI---------GERHGLKPVSVINLEGRMEGER 113
Query: 405 T--DFSG--RYVKDADKDIIEALKAKGRLVKT 432
G R+ +A + +E + G LVK
Sbjct: 114 VPEALRGLDRF--EARRKAVELFREAGHLVKE 143
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 39.1 bits (92), Expect = 0.008
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 619 STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
ST + +G+V+ D +KMSK L N+ + +V+ Y A+ +R +L++
Sbjct: 242 STCAHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG 296
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 38.7 bits (91), Expect = 0.012
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 619 STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
S A KP + + GL+ + +KMSK L N S E + + + LR +L++
Sbjct: 245 SEAGEEKPFVKLWMHAGLLEI-NKEKMSKSLGNIISIREALKESDVEVLRYFLLSG 299
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II
binding protein, aromatic BOX, acetylcholine, protein
binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB:
2rej_A 2rf1_A 2reg_A* 3hcq_A
Length = 298
Score = 35.6 bits (82), Expect = 0.091
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 460 RVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEE 519
VET++E L K T E ++ + A + +G + +
Sbjct: 79 SVETVRE-NLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIID 137
Query: 520 IIVVDSVD 527
++ + D
Sbjct: 138 MVEKGTFD 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.18
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 643 KKMSKKLKNY-P--SPVEVIN 660
KK+ LK Y +P I
Sbjct: 23 KKLQASLKLYADDSAPALAIK 43
Score = 29.9 bits (66), Expect = 2.7
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 18/43 (41%)
Query: 643 KKMSKKLKNYPSPVEVINDYGADALRLYLINS-P--VVRAETL 682
K+ KKL+ +L+LY +S P ++A T+
Sbjct: 19 KQALKKLQA--------------SLKLYADDSAPALAIKA-TM 46
Score = 29.1 bits (64), Expect = 5.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 709 QNAKRLE------IEGGAPFIPLDLATLQ 731
Q K+L+ + AP + + AT++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK-ATME 47
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 33.4 bits (77), Expect = 0.41
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 619 STALFGKPAFRNL-ICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINS 674
+ ++ G+ F + G++ DG KMSK N ++ A+RL L +
Sbjct: 266 AESVTGERRFARHYVHTGMIGW-DGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG 322
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 32.6 bits (75), Expect = 0.77
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 619 STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINS 674
+ K + ++ D KMSK N+ + ++ + ++ R + S
Sbjct: 275 AECFLNKKWCDVFVHGEFLIM-DYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 31.5 bits (72), Expect = 1.1
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 47/143 (32%)
Query: 304 ELARSAENNESYEKLGEVFSGAYLV----GKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359
R+ E +K G VF G Y G+K P++ A+ YV +
Sbjct: 95 TRERTMEE----DKEG-VFLGVYATNPANGEKI-PVW-------------SAN-YVLYEY 134
Query: 360 GTGIVHCAPAFGEDDY----------RVCIENQIINKGENLIVAVDDDGCFTGKIT---- 405
GTG + C PA + D+ +V ++ + + + G + GK T
Sbjct: 135 GTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPE---GAWDF-----EKGAYEGKGTLVNS 186
Query: 406 -DFSGRYVKDADKDIIEALKAKG 427
F G + A + I E L+ +G
Sbjct: 187 DGFDGLDSETAKRKITEWLQDRG 209
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 31.5 bits (72), Expect = 1.6
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 248 KVRNKYTGKIYVVAESRLSALPSEKPKSSAAN 279
+ G + + ++ L K ++
Sbjct: 50 RAACLLDGVPVALKKVQIFDLMDAKARADCIK 81
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET:
MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB:
1ize_A*
Length = 323
Score = 31.4 bits (72), Expect = 1.6
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 1151 SEFQLGNGKIMVDCIENQPPVNLVLGEHVFLSVGDYYVRTKTG 1193
+ + G + + P ++ +G++ G+Y G
Sbjct: 237 ASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVG 279
>3tmg_A Glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein...; ssgcid,
structural genomics; 1.90A {Borrelia burgdorferi}
Length = 280
Score = 31.3 bits (71), Expect = 1.7
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 468 LLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIV 522
+ Q + VP YV + E +++ G ++ E +
Sbjct: 94 NYEGTIQGFVVPSYVPIS---SISELKGKGDKFKNKMIGID-AGAGTQIVTEQAL 144
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 30.5 bits (70), Expect = 2.1
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 36/140 (25%)
Query: 303 GELARSAENNESYEKLGEVFSGAY----LVGKKYEPLFDYFKEFSDVAFRVIADNYVTSD 358
E K G V +G L G++ P++ A N+V +
Sbjct: 72 KVAEAEMATME---KKG-VDTGFKAVHPLTGEEI-PVW-------------AA-NFVLME 112
Query: 359 SGTGIVHCAPAFGEDD------YRVCIENQIINKGENLIVAVDDDGCFTGKIT-----DF 407
GTG V P + D Y + I+ +I + + T K +F
Sbjct: 113 YGTGAVMAVPGHDQRDYEFASKYGLNIK-PVILAADGSEPDLSQQ-ALTEKGVLFNSGEF 170
Query: 408 SGRYVKDADKDIIEALKAKG 427
+G + A I + L A G
Sbjct: 171 NGLDHEAAFNAIADKLTAMG 190
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 30.3 bits (69), Expect = 3.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 638 LAEDGK--KMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676
L +DG+ KMSK+ N+ +V+++ G+DALR ++
Sbjct: 277 LLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKC 317
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 30.2 bits (68), Expect = 5.5
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 16/75 (21%)
Query: 332 YEPLFDYFKEFSDVAFRVIA-DNYVTSDSGTGIVHC--------APAFGEDDYRVCIENQ 382
E + ++ ++ D+ V+ +GTG + P + +C +N
Sbjct: 551 RESEYVKNNTYT---VIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNP 607
Query: 383 IINKGENLIVAVDDD 397
+ D D
Sbjct: 608 EPQV----LTISDAD 618
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 29.5 bits (67), Expect = 5.9
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAE----TLRFKKDGVF 690
D KM K L + P+EV +G A R+ + + TLR D F
Sbjct: 141 DETKMVKTLGAFALPIEVN-PFGIHATRIAIEKAADNLGLSGEITLRMNGDDPF 193
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 8.8
Identities = 33/211 (15%), Positives = 59/211 (27%), Gaps = 63/211 (29%)
Query: 899 DDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPD-FSVLGKRLGRSMGVVAKEVKAM 957
D+ K + +LE +R EP+ F+ + V
Sbjct: 888 KDVKAKYETSILEHSGIR--------------LIEPELFNGYNPEKKEMIQEVI------ 927
Query: 958 SQEDILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPD 1017
+ED+ FE S E +FK GD + I ++
Sbjct: 928 VEEDLEPFEASKETA--------------EQFKH------------QHGDKVDIFEIPET 961
Query: 1018 ESLFEAGV--AREVVNRIQKLRKKIALE-PTD-VVEVYFESLDEDKSV---SQQVLNSQE 1070
+ A + + + + +A + PT + Y S D V + VL S
Sbjct: 962 GEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVV 1021
Query: 1071 HYIRDAIGSPLLPSSTLPSH------AVIIG 1095
+ G + + + G
Sbjct: 1022 EAFIAS-G--ITDPYEMYKYVHVSEVGNCSG 1049
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine
betaine binding, substrate binding domain, venus FLY
cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB:
3l6h_A
Length = 256
Score = 29.0 bits (65), Expect = 9.5
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 468 LLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWG 506
L K + VP Y+ + A G
Sbjct: 80 NLKGAKVGFVVPSYMNVNSIEDLTNQANKTITGIEPGAG 118
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 29.1 bits (66), Expect = 9.9
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 385 NKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDI---IEALKAKGRLV 430
K L + +DDD + KD D+ E + ++ R +
Sbjct: 192 KKLNALPI-IDDDQHLRYIVF------RKDYDRSQVCHNELVDSQKRYL 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,143,285
Number of extensions: 1236023
Number of successful extensions: 2962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 102
Length of query: 1193
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1089
Effective length of database: 3,798,009
Effective search space: 4136031801
Effective search space used: 4136031801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)