RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000999
(1193 letters)
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 215 bits (548), Expect = 1e-61
Identities = 109/259 (42%), Positives = 161/259 (62%), Gaps = 1/259 (0%)
Query: 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARD 496
YP CWR TPL+Y A SWF++ K++L+ NN++ +WVP ++KE R+ WL+N D
Sbjct: 195 LGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVD 254
Query: 497 WAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGP 556
WA+SR+R+WGTPLP+W + + + S +L+ + + + + + ++
Sbjct: 255 WALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACA 314
Query: 557 EFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLM 616
G +RR+ V D W++SG+MP+A +HYPFE+ E F +FP FIAEG+DQTRGWF +L
Sbjct: 315 CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLH 374
Query: 617 VLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676
L LFG AF+N+IC+GL+L E G+KMSK N P ++I +GADALR Y+ S
Sbjct: 375 QLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAP 434
Query: 677 VRAETLRFKKDGVFAVVKD 695
A+ RF + V V+D
Sbjct: 435 PEAD-RRFGPNLVRETVRD 452
Score = 170 bits (431), Expect = 4e-46
Identities = 73/181 (40%), Positives = 113/181 (62%)
Query: 6 EGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTI 65
E + +F + EE++L FW F+ ++ + P Y Y+GPP A GLPH GH A +
Sbjct: 4 EVGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSY 63
Query: 66 KDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIV 125
KD+ RY++M G++ RR GWD HGLPVE E++K LG+K + ++ GI+++N+ACR V
Sbjct: 64 KDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESV 123
Query: 126 TRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTG 185
Y +EWE R W+D + Y T++ ++ES+WW L+++GL+Y+ KV+PY
Sbjct: 124 FTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPR 183
Query: 186 C 186
C
Sbjct: 184 C 184
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 179 bits (455), Expect = 3e-49
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 12/262 (4%)
Query: 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARD 496
YP WR+ P+I+RA P WF + +++ +LD + T + + R +N + + +
Sbjct: 198 IEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNF-KVNWGKTRIYNMVRDRGE 256
Query: 497 WAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIP---SS 553
W +SR R WG PLPV+ +E+GE I+ ++V+ + L E ++ +P +
Sbjct: 257 WVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTH 316
Query: 554 RGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFY 613
G G + D+ D WF+SGS + E +FP EG DQ RGWF
Sbjct: 317 PGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPEL------SFPADMYLEGSDQYRGWFN 370
Query: 614 TLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673
+ + S A G ++ L+ +G V+ +GKKMSK L N P +V+ GAD RL++ +
Sbjct: 371 SSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS 430
Query: 674 SPVVRAETLRFKKDGVFAVVKD 695
+ +R + + D
Sbjct: 431 TDY--LADVRISDEILKQTSDD 450
Score = 147 bits (370), Expect = 4e-38
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 10 FSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIV 69
+E +I E W++ D + L++ + ++ +DGPP+A G H GH L +KD +
Sbjct: 18 GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFI 77
Query: 70 TRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYV 129
RY++M GF+ GWD HGLP+E + K+ D +M ++ E C+ +
Sbjct: 78 VRYKTMQGFYAPYVPGWDTHGLPIEQAL-----TKKGVDRKKMSTAEFREKCKEFALEQI 132
Query: 130 EEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTP 189
E ++ R G DF + Y T+ ++ + +F ++ +KGL+YKG K + +S ++
Sbjct: 133 ELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESS 192
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 158 bits (400), Expect = 9e-42
Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 18/192 (9%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
+ ++ E K FW K + + + P+ +G H GH+ T+ D
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGG-RGKQYVLVMFPYPSGDLHMGHLKNYTMGD 60
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127
++ R++ M G+ V GWD GLP EN K+ +
Sbjct: 61 VLARFRRMQGYEVLHPMGWDAFGLPAENA-----------------ALKFGVHPKDWTYA 103
Query: 128 YVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCK 187
+ + ++ + G D+ + T + ++ W+F +++EKGL Y+ ++ + C+
Sbjct: 104 NIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ 163
Query: 188 TPLSNFEAGQNY 199
T L+N + +
Sbjct: 164 TVLANEQVVEGR 175
Score = 64.6 bits (156), Expect = 3e-11
Identities = 35/251 (13%), Positives = 67/251 (26%), Gaps = 17/251 (6%)
Query: 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARD 496
S W + P+++ E LL + K + + + LE +
Sbjct: 232 ISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDI-----RPKGKSPLEAHPE 286
Query: 497 WAVSRSRFWGTPLP-VWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRG 555
+ + G P + D + + + FD + N G
Sbjct: 287 FYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGG 346
Query: 556 PEFGLLRRIEDVF------DCWFESGSMPY--AYIHYPFENAEHFENNFPGQFIAEGLDQ 607
E +L + F D P+ + F + +
Sbjct: 347 VEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEP 406
Query: 608 TRGWFYTLM--VLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGAD 665
TR + + A +G + MSK N + + GAD
Sbjct: 407 TRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGAD 466
Query: 666 ALRLYLI-NSP 675
R+ ++ +P
Sbjct: 467 IARITILFAAP 477
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 156 bits (394), Expect = 2e-41
Identities = 74/254 (29%), Positives = 113/254 (44%), Gaps = 21/254 (8%)
Query: 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT-YWVPDYVKEKRFHNWLENAR 495
C R TP+ Y P W++R+ L E++L ++ +K +WLEN +
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVK 245
Query: 496 DWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRG 555
DW +SR +WG +P W ED + + V R+ D + +
Sbjct: 246 DWNISRQLWWGHQIPAWYCEDCQAVNVPRP---------------ERYLEDPTSCEACGS 290
Query: 556 PEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTL 615
P +R EDVFD WF S P + + +P E E + +PG + G D W +
Sbjct: 291 PRL---KRDEDVFDTWFSSALWPLSTLGWPEET-EDLKAFYPGDVLVTGYDILFLWVSRM 346
Query: 616 MVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSP 675
V G+ F+ ++ +GLVL E G+KMSK N P+E++ YGADALR LI
Sbjct: 347 EVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALI-YL 405
Query: 676 VVRAETLRFKKDGV 689
+ +R +
Sbjct: 406 ATGGQDIRLDLRWL 419
Score = 131 bits (329), Expect = 5e-33
Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 7/240 (2%)
Query: 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKD 67
K + E K E W +P +V + PP TG H GH L +++D
Sbjct: 5 KAYDPKSVEPKWAEKWAKNPFVANPKSG---KPPFVIFMPPPNVTGSLHMGHALDNSLQD 61
Query: 68 IVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127
+ RY+ M GF G D G+ + +++ L + + +G +K+ E
Sbjct: 62 ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTR-HDLGREKFLERVWQWKEE 120
Query: 128 YVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCK 187
+ + R G D+ + TMD K +V + F++ Y +GL Y+ +++ + C+
Sbjct: 121 SGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE 180
Query: 188 TPLSNFEAGQNYKDVPDPEIMVS---FPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANF 244
T LS+ E + E + + + + VN ++
Sbjct: 181 TTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDW 240
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 94.6 bits (234), Expect = 8e-23
Identities = 58/231 (25%), Positives = 89/231 (38%), Gaps = 59/231 (25%)
Query: 205 PEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVV 260
P + V FP+ EKA+ + WTTTPWTLP N+A V+ +TY + I
Sbjct: 1 PSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEE 60
Query: 261 AESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGE 320
R + + +
Sbjct: 61 GLGR---------------------------------------------KLLGEGTPVLK 75
Query: 321 VFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIE 380
F G L G Y P + + + + V+ +YV+ + GTGIVH APAFG +D
Sbjct: 76 TFPGKALEGLPYTP---PYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARV 132
Query: 381 NQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVK 431
G L+ VD++G + F G Y ++A++ I+ L+ +G L K
Sbjct: 133 Y-----GLPLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGFLFK 176
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 95.7 bits (237), Expect = 1e-21
Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 19/152 (12%)
Query: 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTL 101
+ P+A G H GH+L D+ RYQ M G V D HG P+ + +
Sbjct: 4 ILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL- 62
Query: 102 GIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVW 161
GI + +M E G I + N + T + +
Sbjct: 63 GITPEQMIGEM------------------SQEHQTDFAGFNISYDNYHSTHSEENRQLSE 104
Query: 162 WVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNF 193
++++L E G + Y L +
Sbjct: 105 LIYSRLKENGFIKNRTISQLYDPEKGMFLPDR 136
Score = 58.8 bits (141), Expect = 2e-09
Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 45/244 (18%)
Query: 441 FCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVS 500
S + R +F + + E L + + V K + + W +S
Sbjct: 136 RFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL-QEQVANKMQEWFESGLQQWDIS 194
Query: 501 RSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGL 560
R + + + + D + +
Sbjct: 195 RDAPY-FGFEIPNAPGKYFYV---------------WLDAPIGYMGSFKNLCDK------ 232
Query: 561 LRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLST 620
R FD +++ S Y + +P + F V
Sbjct: 233 -RGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTV- 290
Query: 621 ALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAE 680
+G KMSK + +N + AD+LR Y R +
Sbjct: 291 --------------------NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRID 330
Query: 681 TLRF 684
+
Sbjct: 331 DIDL 334
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS)
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 87.8 bits (216), Expect = 2e-20
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 697 FLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756
FL +N Y F V A ++ P +D+W+ + Q L+ V + +
Sbjct: 2 FLTLWNVYSFFVTYA---NLDRPDLKNPPPPEKR----PEMDRWLLARMQDLIQRVTEAL 54
Query: 757 EGYRLYTVVP-YLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMA 815
E Y T +++L+ YVR NR+R D A +TLY L+ + A
Sbjct: 55 EAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAA 114
Query: 816 PFTPFFTEALYQNMRK-VGSGSEESIHFCSFPK-EEGKRDERIEQSVLRMMTIIDLARNI 873
PFTPF E L+QN+ + V ++ES+H +P+ + DE + + ++ ++DLAR
Sbjct: 115 PFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAA 174
Query: 874 RERHN 878
R +
Sbjct: 175 RAKSG 179
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 89.7 bits (221), Expect = 2e-19
Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 31/237 (13%)
Query: 436 THSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENAR 495
P+ +R ++++++ E+L ++ W VK E
Sbjct: 132 MFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPW-KPNVKNMVLSWIEEGLE 190
Query: 496 DWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRG 555
+ A++R WG P+P+ + +++ V I S
Sbjct: 191 ERAITRDLNWGIPVPLDEEDMKGKVLYV-------------------WFEAPIGYISITI 231
Query: 556 PEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTL 615
F + + + W +N +P +A G +
Sbjct: 232 EHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEW 291
Query: 616 MVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672
++ N + E GKK S E ++ + AD LR YL
Sbjct: 292 ----------NLPYDIPANEYLTLE-GKKFSTSRNWAIWVHEFLDVFPADYLRYYLT 337
Score = 74.7 bits (182), Expect = 1e-14
Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 20/148 (13%)
Query: 42 YVFYDGPPFATGLPHYGHIL-AGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKT 100
Y+ P+A G H GH+ A DI RY + G V G D HG P+ K
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 101 LGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESV 160
G R+ +D+++E + R I F +T +
Sbjct: 64 -GRSPREI-----VDEFHEQIKITFQRA-------------KISFDFFGRTELPIHYKLS 104
Query: 161 WWVFAQLYEKGLVYKGFKVMPYSTGCKT 188
F + YE G + K Y K
Sbjct: 105 QEFFLKAYENGHLVKKVTKQAYCEHDKM 132
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 85.4 bits (210), Expect = 2e-19
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 347 FRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD 406
VI ++VT+D+GTG VH AP GEDDY V + ++ I +DD G FT +
Sbjct: 107 SLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPV-----ISPIDDKGVFTEEGGQ 161
Query: 407 FSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439
F G + A+K + + L KG L+K +THSY
Sbjct: 162 FEGMFYDKANKAVTDLLTEKGALLKLDFITHSY 194
Score = 53.9 bits (128), Expect = 1e-08
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 201 DVPDPEIMVSFPIVGDPEK----AAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKY 253
D I V+F + D A F+ WTTTPWT+PSN+A+ V+ Y +
Sbjct: 2 DKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG 58
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 78.6 bits (192), Expect = 6e-16
Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 19/146 (13%)
Query: 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRD 107
+ PH GH + D + R+ + G+ G D HG V
Sbjct: 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA------- 63
Query: 108 DVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167
E ++ V R +++ G + + +T + + + V V ++
Sbjct: 64 ----------GEDPKAFVDRVSGRFKRAWDLLGIA--YDDFIRTTEERHKKVVQLVLKKV 111
Query: 168 YEKGLVYKGFKVMPYSTGCKTPLSNF 193
YE G +Y G Y C+ +
Sbjct: 112 YEAGDIYYGEYEGLYCVSCERFYTEK 137
Score = 74.7 bits (182), Expect = 1e-14
Identities = 46/245 (18%), Positives = 76/245 (31%), Gaps = 13/245 (5%)
Query: 438 SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRF--------HN 489
+ V + D Y V +RF
Sbjct: 84 LLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGL 143
Query: 490 WLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHIT 549
+ R + + + + E I + + E E + L D
Sbjct: 144 CPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSI 203
Query: 550 IPSSRGPEFGLLRRIED--VFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQ 607
+G+ ++ V WF++ + + YP A I + + +
Sbjct: 204 SRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK 263
Query: 608 TRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADAL 667
F+ M G P +R+L G +L DG+KMSK L N P ++ YG DAL
Sbjct: 264 PHAVFWPTM---LKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDAL 320
Query: 668 RLYLI 672
R YL+
Sbjct: 321 RYYLL 325
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 67.7 bits (164), Expect = 2e-13
Identities = 29/228 (12%), Positives = 55/228 (24%), Gaps = 59/228 (25%)
Query: 209 VSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSAL 268
+ FP+ G + +TT P TL L + + V+A +
Sbjct: 7 ILFPVEGKEVR--IPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKR 64
Query: 269 PSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLV 328
+E + + G
Sbjct: 65 KTEIERQAEGREKTG--------------------------------------------- 79
Query: 329 GKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINK-- 386
+ + +YV GTG + PA + DY + + K
Sbjct: 80 ---VFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKV 136
Query: 387 --GENLIVAVDDDGCFTGKIT-----DFSGRYVKDADKDIIEALKAKG 427
+ + + F G ++ + +I L+ KG
Sbjct: 137 IERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKG 184
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 273
Score = 54.6 bits (130), Expect = 2e-08
Identities = 22/203 (10%), Positives = 58/203 (28%), Gaps = 10/203 (4%)
Query: 701 YNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYR 760
N RF++ N I F P + + +D+++ + + E +
Sbjct: 5 RNTLRFMLGN-----IND---FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFD 56
Query: 761 LYTVVPYLLKFLDNLTN--IYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFT 818
+ + F++ + + R + LY +L+ K++AP
Sbjct: 57 YLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPIL 116
Query: 819 PFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHN 878
E ++ + V S + + ++ + + R
Sbjct: 117 VHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARNEKV 176
Query: 879 KPLKSPLREMIVVHPDADFLDDI 901
+ I + + + +
Sbjct: 177 IGKSLEAKVTIASNDKFNASEFL 199
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 218
Score = 50.8 bits (120), Expect = 2e-07
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 24/202 (11%)
Query: 701 YNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYR 760
YNA RF++ + + + + + + + D+++ S V + E
Sbjct: 5 YNAARFVLLSREGFQAK-------------EDTPTLADRFMRSRLSRGVEEITALYEALD 51
Query: 761 LYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPF 820
L + + + + + + + L TL VL K++ P PF
Sbjct: 52 LAQAAREVYELVWSEFCDWYL----EAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPF 107
Query: 821 FTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNKP 880
T LYQ + + E G RDE E++ + + R ++ P
Sbjct: 108 LTSELYQALTG------KEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALKAEAGLP 161
Query: 881 LKSPLREMIVVHPDADFLDDIA 902
+ + + A +++
Sbjct: 162 PAQEV-RVYLEGETAPVEENLE 182
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 50.7 bits (120), Expect = 5e-07
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 577 MPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGL 636
P +I N + N+F G D + ST + +G+
Sbjct: 202 RPGWHIECSAMNCKQLGNHF--DIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGM 259
Query: 637 VLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSP 675
V+ D +KMSK L N+ + +V+ Y A+ +R +L++
Sbjct: 260 VMV-DREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297
Score = 35.7 bits (81), Expect = 0.026
Identities = 19/165 (11%), Positives = 43/165 (26%), Gaps = 11/165 (6%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
L H GH D+V RY +G+ + + ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN--GESFVA 87
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
+ I + ++ ++ + + I+ ++ V
Sbjct: 88 MVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVM---- 143
Query: 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPI 213
+ Y + L +AG V D + F +
Sbjct: 144 -----FDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVL 183
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 46.0 bits (108), Expect = 3e-06
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 336 FDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVD 395
++V ++AD V D GTG + PA DY + + + + ++
Sbjct: 47 KRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKP-----VSVIN 101
Query: 396 DDGCFT--GKITDFSGRYVKDADKDIIEALKAKGRLVKT 432
+G G +A + +E + G LVK
Sbjct: 102 LEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKE 140
Score = 33.3 bits (75), Expect = 0.071
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 209 VSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTY 246
+ + + G T P T+ ++ A+ V+
Sbjct: 6 LRYEVEGGGF---IEIATVRPETVFADQAIAVHPEDER 40
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 47.4 bits (111), Expect = 6e-06
Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 2/140 (1%)
Query: 23 WNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTR 82
W A K + R R + E + +G H G+ IV G+ V
Sbjct: 2 WADYIADK--IIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRH 59
Query: 83 RFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRW 142
WD + + + K + + S ++ ++E+ + + G
Sbjct: 60 IHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIE 119
Query: 143 IDFRNDYKTMDLKFMESVWW 162
+D +
Sbjct: 120 VDLLYASELYKRGEYSEEIR 139
Score = 42.0 bits (97), Expect = 3e-04
Identities = 13/205 (6%), Positives = 40/205 (19%)
Query: 471 NNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLE 530
+ + + + S + +
Sbjct: 104 HFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPP 163
Query: 531 KLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAE 590
++ + + + + + W + S
Sbjct: 164 LPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR 223
Query: 591 HFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLK 650
+ + + T + ++GK A +L+ + + KMS
Sbjct: 224 WSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKG 283
Query: 651 NYPSPVEVINDYGADALRLYLINSP 675
N ++ +R
Sbjct: 284 NVILLSDLYEVLEPGLVRFIYARHR 308
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3
{Arthrobacter globiformis [TaxId: 1665]}
Length = 417
Score = 31.0 bits (70), Expect = 0.90
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 432 TGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWL 491
G+ H + F R D + + + +++ + N+ K
Sbjct: 215 LGAPFHQHIFSARLDMAIDGF--TNRVEEEDVVRQTMGPGNE--RGNAFSRKRTVLTRES 270
Query: 492 ENARDWAVSRSRFW 505
E R+ R W
Sbjct: 271 EAVREADARTGRTW 284
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 30.8 bits (68), Expect = 0.97
Identities = 15/191 (7%), Positives = 38/191 (19%), Gaps = 5/191 (2%)
Query: 36 TRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVEN 95
G + + +A + + + + + +
Sbjct: 93 GPGDKATFDALGIEWVKPVSTIRDAIAMMRTLLAGEKTESGAQLMGVKAVQEKIPIYMGA 152
Query: 96 EIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRND--YKTMD 153
+ L + + + V E E D
Sbjct: 153 QGPMMLKTAGEISDGALINASNPKDFEAAVPLIKEGAEAAGKSIADIDVAAYTCCSIDED 212
Query: 154 LKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVP---DPEIMVS 210
+ + G F+ ++ D +M +
Sbjct: 213 AAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGKGDFGGAIGAVDDALMEA 272
Query: 211 FPIVGDPEKAA 221
F +VG P++
Sbjct: 273 FSVVGTPDEFI 283
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
(Hansenula polymorpha) [TaxId: 4905]}
Length = 436
Score = 29.1 bits (65), Expect = 3.4
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKL-LDNNKQTYWVPDYVKEKRFHNWLENAR 495
H + F R D + + + L + + Y Y ++ F ++
Sbjct: 220 HQHLFSLRIDPRIDGDG--NSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLT 277
Query: 496 DWAVSRSRFW 505
++ + R W
Sbjct: 278 NYESATGRSW 287
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 28.4 bits (63), Expect = 4.6
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 651 NYPSPVEVINDY---GADALRLYLINSPVVRA 679
N P+ V++ + G ++RLY N ++A
Sbjct: 11 NLPAASTVVSMFKSNGIKSMRLYAPNQAALQA 42
>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus
acidocaldarius [TaxId: 405212]}
Length = 308
Score = 28.3 bits (61), Expect = 5.2
Identities = 26/196 (13%), Positives = 49/196 (25%), Gaps = 12/196 (6%)
Query: 474 QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLS 533
WV ++ + AV S + E+ D++ + + +
Sbjct: 80 GGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAY--DALQWIAERA 137
Query: 534 GEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFE 593
+ D R + + + +L + F+ P A E
Sbjct: 138 ADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHPPASIEE 197
Query: 594 NNFPGQFIAE----------GLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGK 643
N + + VL L G P L + GK
Sbjct: 198 NAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGK 257
Query: 644 KMSKKLKNYPSPVEVI 659
++ L VE+
Sbjct: 258 LYAEALNKAGVKVEIE 273
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 28.0 bits (61), Expect = 6.9
Identities = 19/142 (13%), Positives = 34/142 (23%), Gaps = 13/142 (9%)
Query: 52 TGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV-------------ENEID 98
H GH+ + D + R + G V D G + +
Sbjct: 19 NKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKE 78
Query: 99 KTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFME 158
K R V +Y +I + I L
Sbjct: 79 KYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 138
Query: 159 SVWWVFAQLYEKGLVYKGFKVM 180
+ + + GL+ K ++
Sbjct: 139 DLLVWESDIVRAGLLQKALALL 160
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 27.8 bits (60), Expect = 8.6
Identities = 12/91 (13%), Positives = 28/91 (30%)
Query: 818 TPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERH 877
F + K S+ I P+ E E ++ ++T ++ +
Sbjct: 45 IKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKAT 104
Query: 878 NKPLKSPLREMIVVHPDADFLDDIAGKLKEY 908
K + S +V+ + D+ +
Sbjct: 105 IKTILSNKVVGLVLDFFCVSMIDVGNEFGIP 135
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 26.9 bits (58), Expect = 8.9
Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 31 TQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDI----VTRYQSMMGFHVTRRF-G 85
+ + + F P ++A +I V + +
Sbjct: 52 PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMID 111
Query: 86 WDCHGLPVENEIDKTLGIKRRDDVFQ 111
+ +PV +E + +G ++
Sbjct: 112 NNIQEMPVVDEKGEIVGDLNSLEILL 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,693,527
Number of extensions: 237125
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 42
Length of query: 1193
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1097
Effective length of database: 1,089,516
Effective search space: 1195199052
Effective search space used: 1195199052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)