Query 001002
Match_columns 1193
No_of_seqs 493 out of 2406
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2E-207 4E-212 1892.2 81.0 781 157-964 8-813 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 8E-201 2E-205 1849.0 74.5 750 162-924 44-818 (821)
3 KOG0161 Myosin class II heavy 100.0 3E-196 6E-201 1876.6 69.3 1015 136-1174 10-1118(1930)
4 cd01383 MYSc_type_VIII Myosin 100.0 6E-189 1E-193 1724.6 64.9 677 202-879 1-677 (677)
5 cd01381 MYSc_type_VII Myosin m 100.0 7E-184 2E-188 1680.7 63.7 660 210-879 1-671 (671)
6 cd01380 MYSc_type_V Myosin mot 100.0 2E-183 5E-188 1683.1 64.6 669 210-879 1-691 (691)
7 cd01377 MYSc_type_II Myosin mo 100.0 4E-183 8E-188 1681.9 65.9 672 205-879 1-693 (693)
8 cd01384 MYSc_type_XI Myosin mo 100.0 2E-182 4E-187 1666.0 63.5 659 209-882 1-673 (674)
9 cd01378 MYSc_type_I Myosin mot 100.0 8E-182 2E-186 1665.9 62.9 657 210-879 1-674 (674)
10 cd01387 MYSc_type_XV Myosin mo 100.0 2E-181 4E-186 1661.1 63.6 668 209-879 1-677 (677)
11 cd01385 MYSc_type_IX Myosin mo 100.0 1E-180 3E-185 1656.2 64.5 669 208-880 6-689 (692)
12 cd01382 MYSc_type_VI Myosin mo 100.0 5E-180 1E-184 1656.9 64.3 664 208-879 3-716 (717)
13 smart00242 MYSc Myosin. Large 100.0 3E-177 6E-182 1632.9 63.9 665 204-880 1-677 (677)
14 cd01379 MYSc_type_III Myosin m 100.0 5E-176 1E-180 1604.3 61.1 635 210-879 1-653 (653)
15 KOG0164 Myosin class I heavy c 100.0 3E-176 7E-181 1501.1 54.8 698 208-920 7-732 (1001)
16 cd00124 MYSc Myosin motor doma 100.0 3E-175 6E-180 1619.6 63.5 669 210-879 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 5E-174 1E-178 1605.6 63.1 666 211-879 2-767 (767)
18 KOG0163 Myosin class VI heavy 100.0 5E-172 1E-176 1464.7 69.0 776 158-964 4-833 (1259)
19 KOG0162 Myosin class I heavy c 100.0 7E-173 2E-177 1471.9 50.7 707 206-930 15-740 (1106)
20 KOG0160 Myosin class V heavy c 100.0 2E-169 4E-174 1531.2 67.0 743 203-978 3-753 (862)
21 PF00063 Myosin_head: Myosin h 100.0 3E-169 7E-174 1582.1 56.3 658 211-868 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 8E-113 2E-117 1060.8 27.8 745 203-960 55-845 (1062)
23 KOG0161 Myosin class II heavy 99.3 6.8E-11 1.5E-15 157.1 19.9 700 376-1172 219-1060(1930)
24 cd01363 Motor_domain Myosin an 98.7 1.6E-08 3.5E-13 108.0 5.5 89 276-369 8-97 (186)
25 PF02736 Myosin_N: Myosin N-te 98.1 6.8E-06 1.5E-10 65.9 6.5 42 158-199 1-42 (42)
26 KOG0160 Myosin class V heavy c 98.0 9E-05 1.9E-09 93.4 16.1 88 859-962 671-759 (862)
27 KOG4229 Myosin VII, myosin IXB 97.5 3.4E-05 7.4E-10 99.4 1.3 191 755-964 794-986 (1062)
28 KOG0976 Rho/Rac1-interacting s 97.0 0.015 3.3E-07 71.1 15.7 78 990-1067 94-171 (1265)
29 PRK02224 chromosome segregatio 96.8 0.21 4.5E-06 66.2 26.7 41 846-889 117-161 (880)
30 COG5022 Myosin heavy chain [Cy 96.8 0.099 2.1E-06 69.0 22.4 76 895-985 734-814 (1463)
31 TIGR02169 SMC_prok_A chromosom 96.7 0.23 5E-06 67.6 26.9 11 1159-1169 475-485 (1164)
32 KOG1029 Endocytic adaptor prot 96.7 0.74 1.6E-05 57.1 26.7 42 1105-1146 533-577 (1118)
33 PF00612 IQ: IQ calmodulin-bin 96.7 0.0021 4.6E-08 43.7 3.4 15 909-923 4-18 (21)
34 KOG0520 Uncharacterized conser 96.6 0.0024 5.3E-08 81.0 5.4 46 883-928 810-855 (975)
35 PF00612 IQ: IQ calmodulin-bin 96.5 0.0032 7E-08 42.8 3.5 20 945-964 2-21 (21)
36 KOG1029 Endocytic adaptor prot 96.5 0.32 6.9E-06 60.1 22.1 15 800-814 197-211 (1118)
37 PRK11637 AmiB activator; Provi 96.5 0.053 1.1E-06 65.7 16.2 30 1018-1047 91-120 (428)
38 KOG0971 Microtubule-associated 96.4 0.16 3.4E-06 63.6 19.1 37 1095-1131 402-438 (1243)
39 KOG0925 mRNA splicing factor A 96.3 0.0032 6.9E-08 73.8 3.9 66 248-319 23-89 (699)
40 PRK11637 AmiB activator; Provi 96.2 0.052 1.1E-06 65.8 13.6 51 1002-1052 68-118 (428)
41 KOG2128 Ras GTPase-activating 96.1 0.055 1.2E-06 70.9 14.0 73 884-964 566-642 (1401)
42 KOG0996 Structural maintenance 96.1 0.51 1.1E-05 61.2 22.1 16 890-905 285-300 (1293)
43 PF09726 Macoilin: Transmembra 96.1 0.15 3.3E-06 64.8 17.5 34 1097-1130 595-628 (697)
44 KOG0971 Microtubule-associated 96.0 0.13 2.8E-06 64.3 15.5 26 1149-1174 451-476 (1243)
45 PF09755 DUF2046: Uncharacteri 96.0 4.1 9E-05 46.6 27.0 109 1014-1126 140-252 (310)
46 PF09726 Macoilin: Transmembra 96.0 0.16 3.5E-06 64.6 17.0 22 1153-1174 636-657 (697)
47 PF07888 CALCOCO1: Calcium bin 95.8 0.69 1.5E-05 56.6 20.6 19 805-823 38-56 (546)
48 PRK04863 mukB cell division pr 95.5 3.2 7E-05 57.4 27.6 38 1137-1174 433-470 (1486)
49 PF12718 Tropomyosin_1: Tropom 95.5 0.9 2E-05 46.7 17.4 64 1101-1172 78-141 (143)
50 KOG2129 Uncharacterized conser 95.5 2.7 5.8E-05 49.0 22.4 96 1032-1130 181-280 (552)
51 KOG0163 Myosin class VI heavy 95.3 1 2.2E-05 55.7 19.3 40 425-471 360-399 (1259)
52 PRK09039 hypothetical protein; 95.3 0.93 2E-05 53.3 19.0 22 1105-1126 139-160 (343)
53 KOG0164 Myosin class I heavy c 95.3 0.11 2.3E-06 63.7 11.1 57 906-964 696-754 (1001)
54 PRK02224 chromosome segregatio 95.2 4.8 0.0001 53.5 27.7 76 1098-1173 414-502 (880)
55 COG5185 HEC1 Protein involved 95.2 0.83 1.8E-05 53.8 17.5 87 983-1069 332-421 (622)
56 COG4942 Membrane-bound metallo 95.1 0.35 7.5E-06 57.3 14.4 63 1007-1069 64-126 (420)
57 PF14662 CCDC155: Coiled-coil 95.0 0.73 1.6E-05 48.9 15.0 28 1137-1164 163-190 (193)
58 COG1579 Zn-ribbon protein, pos 95.0 1.7 3.7E-05 48.2 18.5 6 1059-1064 93-98 (239)
59 COG1196 Smc Chromosome segrega 95.0 8.6 0.00019 52.8 29.4 30 843-878 123-152 (1163)
60 PF00038 Filament: Intermediat 95.0 1.6 3.4E-05 50.6 19.6 82 991-1072 71-152 (312)
61 smart00015 IQ Short calmodulin 95.0 0.022 4.8E-07 40.8 2.6 19 907-925 4-22 (26)
62 KOG0250 DNA repair protein RAD 94.9 1.3 2.9E-05 57.5 19.9 37 1095-1131 393-429 (1074)
63 smart00015 IQ Short calmodulin 94.9 0.027 5.8E-07 40.4 3.0 19 945-963 4-22 (26)
64 PF12128 DUF3584: Protein of u 94.9 11 0.00023 52.0 30.0 54 779-832 111-176 (1201)
65 KOG0996 Structural maintenance 94.9 0.28 6.1E-06 63.4 13.6 28 1019-1046 443-470 (1293)
66 KOG0976 Rho/Rac1-interacting s 94.8 1 2.3E-05 55.9 17.7 61 986-1046 97-157 (1265)
67 PHA02562 46 endonuclease subun 94.8 1.5 3.3E-05 54.9 20.4 66 1004-1073 215-280 (562)
68 PF05667 DUF812: Protein of un 94.7 1.1 2.4E-05 56.1 18.4 77 1098-1174 403-482 (594)
69 PF15070 GOLGA2L5: Putative go 94.7 1.2 2.6E-05 56.2 18.5 9 1114-1122 164-172 (617)
70 PF13207 AAA_17: AAA domain; P 94.6 0.024 5.3E-07 55.5 3.0 23 295-317 1-23 (121)
71 PTZ00014 myosin-A; Provisional 94.6 0.06 1.3E-06 69.7 7.0 42 906-962 777-818 (821)
72 KOG0994 Extracellular matrix g 94.5 23 0.00049 46.6 29.2 25 1149-1173 1720-1744(1758)
73 PF07888 CALCOCO1: Calcium bin 94.5 1.5 3.2E-05 53.9 18.2 9 909-917 138-146 (546)
74 COG1196 Smc Chromosome segrega 94.5 3.5 7.7E-05 56.4 24.0 7 574-580 8-14 (1163)
75 PRK04863 mukB cell division pr 94.5 5.7 0.00012 55.2 25.6 24 294-317 28-51 (1486)
76 COG3883 Uncharacterized protei 94.3 2.1 4.5E-05 48.1 17.1 70 993-1062 43-112 (265)
77 PF15066 CAGE1: Cancer-associa 94.2 0.38 8.2E-06 56.7 11.7 34 1140-1173 490-523 (527)
78 PRK03918 chromosome segregatio 94.2 1.1 2.4E-05 59.4 17.8 26 1148-1173 407-432 (880)
79 KOG0995 Centromere-associated 94.0 4.6 0.0001 49.4 20.5 78 993-1070 306-386 (581)
80 PRK09039 hypothetical protein; 94.0 1.2 2.7E-05 52.3 15.7 14 948-961 38-51 (343)
81 PHA02562 46 endonuclease subun 93.9 3.4 7.3E-05 51.9 20.7 20 994-1013 254-273 (562)
82 KOG0933 Structural maintenance 93.9 23 0.00049 46.2 26.9 81 993-1073 299-382 (1174)
83 PF08317 Spc7: Spc7 kinetochor 93.7 4.3 9.3E-05 47.5 19.5 13 1140-1152 274-286 (325)
84 PF08317 Spc7: Spc7 kinetochor 93.6 6.7 0.00014 45.9 20.9 8 767-774 20-27 (325)
85 PF00769 ERM: Ezrin/radixin/mo 93.5 0.67 1.5E-05 52.0 11.9 29 1148-1176 177-205 (246)
86 PF12128 DUF3584: Protein of u 93.5 2 4.3E-05 58.9 18.7 27 293-319 17-43 (1201)
87 COG4372 Uncharacterized protei 93.5 9.1 0.0002 44.5 20.5 29 1098-1126 205-233 (499)
88 PF06785 UPF0242: Uncharacteri 93.4 2.4 5.2E-05 48.2 15.5 119 992-1123 110-228 (401)
89 TIGR03015 pepcterm_ATPase puta 93.3 0.084 1.8E-06 59.4 4.5 28 291-318 41-68 (269)
90 PF04849 HAP1_N: HAP1 N-termin 93.3 0.65 1.4E-05 53.0 11.4 140 1013-1174 164-304 (306)
91 PF13401 AAA_22: AAA domain; P 93.3 0.061 1.3E-06 53.3 2.9 29 291-319 2-30 (131)
92 KOG0963 Transcription factor/C 93.3 13 0.00029 46.0 22.7 31 1095-1125 241-271 (629)
93 PF13191 AAA_16: AAA ATPase do 93.2 0.069 1.5E-06 56.1 3.3 33 288-320 19-51 (185)
94 PF01576 Myosin_tail_1: Myosin 93.2 0.025 5.5E-07 73.9 0.0 42 1133-1174 329-370 (859)
95 KOG0250 DNA repair protein RAD 93.1 5.5 0.00012 52.1 20.3 16 839-854 159-174 (1074)
96 KOG0963 Transcription factor/C 93.1 9.3 0.0002 47.3 21.2 110 1054-1174 248-358 (629)
97 KOG0612 Rho-associated, coiled 93.1 0.54 1.2E-05 61.2 11.4 26 1147-1172 668-693 (1317)
98 PF13238 AAA_18: AAA domain; P 93.1 0.065 1.4E-06 52.7 2.8 22 296-317 1-22 (129)
99 cd00009 AAA The AAA+ (ATPases 93.0 0.12 2.6E-06 51.0 4.6 30 289-318 15-44 (151)
100 TIGR00606 rad50 rad50. This fa 93.0 0.82 1.8E-05 63.2 14.0 21 294-314 29-49 (1311)
101 PF01576 Myosin_tail_1: Myosin 93.0 0.028 6.1E-07 73.5 0.0 23 1150-1172 318-340 (859)
102 PF12718 Tropomyosin_1: Tropom 92.9 1.5 3.2E-05 45.1 12.3 48 1000-1047 12-59 (143)
103 TIGR02322 phosphon_PhnN phosph 92.8 0.079 1.7E-06 56.0 3.1 25 294-318 2-26 (179)
104 PF05667 DUF812: Protein of un 92.7 2.4 5.2E-05 53.3 16.2 29 1096-1124 447-475 (594)
105 KOG0977 Nuclear envelope prote 92.7 1.6 3.4E-05 53.7 14.0 26 1147-1172 247-272 (546)
106 cd02019 NK Nucleoside/nucleoti 92.6 0.1 2.3E-06 46.4 3.1 22 296-317 2-23 (69)
107 KOG0977 Nuclear envelope prote 92.5 5.7 0.00012 49.0 18.5 80 994-1073 112-194 (546)
108 KOG0933 Structural maintenance 92.5 45 0.00098 43.6 28.1 77 993-1073 785-861 (1174)
109 TIGR00606 rad50 rad50. This fa 92.3 14 0.00031 51.4 24.3 20 807-826 680-699 (1311)
110 COG3883 Uncharacterized protei 92.2 5.4 0.00012 44.9 16.3 54 999-1052 35-88 (265)
111 PRK03918 chromosome segregatio 92.2 1.7 3.6E-05 57.7 15.0 13 863-875 128-140 (880)
112 COG4942 Membrane-bound metallo 92.1 4.4 9.6E-05 48.3 16.4 28 1145-1172 209-236 (420)
113 PF10168 Nup88: Nuclear pore c 92.1 9 0.00019 49.5 20.5 21 768-788 421-441 (717)
114 PF00004 AAA: ATPase family as 92.1 0.1 2.3E-06 51.4 2.7 23 296-318 1-23 (132)
115 KOG0980 Actin-binding protein 91.9 4 8.6E-05 52.0 16.2 9 668-676 120-128 (980)
116 KOG0964 Structural maintenance 91.8 2.3 5E-05 54.4 14.2 109 1054-1172 264-375 (1200)
117 cd01131 PilT Pilus retraction 91.8 0.13 2.9E-06 55.6 3.3 25 295-319 3-27 (198)
118 PF13851 GAS: Growth-arrest sp 91.6 16 0.00035 39.8 19.0 54 998-1051 30-83 (201)
119 PRK07196 fliI flagellum-specif 91.6 0.43 9.3E-06 57.6 7.6 42 275-316 137-178 (434)
120 PRK13833 conjugal transfer pro 91.6 0.19 4.1E-06 58.4 4.5 34 284-319 137-170 (323)
121 PRK05480 uridine/cytidine kina 91.6 0.16 3.4E-06 55.2 3.7 27 291-317 4-30 (209)
122 PF01583 APS_kinase: Adenylyls 91.5 0.21 4.5E-06 52.0 4.2 30 293-322 2-31 (156)
123 smart00382 AAA ATPases associa 91.4 0.13 2.8E-06 50.2 2.6 28 293-320 2-29 (148)
124 PRK06696 uridine kinase; Valid 91.4 0.26 5.6E-06 54.3 5.1 40 278-319 9-48 (223)
125 PF00485 PRK: Phosphoribulokin 91.3 0.13 2.9E-06 55.2 2.8 26 296-321 2-27 (194)
126 cd01918 HprK_C HprK/P, the bif 91.3 0.17 3.6E-06 52.3 3.2 24 293-316 14-37 (149)
127 cd00820 PEPCK_HprK Phosphoenol 91.3 0.17 3.6E-06 49.4 3.0 23 292-314 14-36 (107)
128 COG4372 Uncharacterized protei 91.3 5.7 0.00012 46.1 15.4 29 1097-1125 253-281 (499)
129 PF14662 CCDC155: Coiled-coil 91.2 5.3 0.00011 42.7 14.1 17 1156-1172 168-184 (193)
130 PF10174 Cast: RIM-binding pro 91.2 14 0.0003 48.0 20.7 35 1139-1173 569-603 (775)
131 PF09738 DUF2051: Double stran 91.2 17 0.00038 41.9 19.5 65 1104-1168 220-298 (302)
132 PRK00300 gmk guanylate kinase; 91.1 0.15 3.2E-06 55.0 2.9 26 292-317 4-29 (205)
133 cd02023 UMPK Uridine monophosp 91.1 0.16 3.4E-06 54.7 3.0 22 296-317 2-23 (198)
134 cd01129 PulE-GspE PulE/GspE Th 91.1 0.23 5E-06 56.3 4.5 36 283-319 71-106 (264)
135 COG0444 DppD ABC-type dipeptid 91.0 0.14 3E-06 58.6 2.6 28 291-318 29-56 (316)
136 KOG0994 Extracellular matrix g 91.0 34 0.00074 45.1 23.0 17 247-263 208-225 (1758)
137 TIGR00235 udk uridine kinase. 91.0 0.2 4.3E-06 54.4 3.7 28 291-318 4-31 (207)
138 KOG1899 LAR transmembrane tyro 90.9 1.4 2.9E-05 53.7 10.6 32 1021-1052 179-210 (861)
139 PRK08233 hypothetical protein; 90.8 0.15 3.3E-06 53.6 2.5 25 294-318 4-28 (182)
140 KOG0964 Structural maintenance 90.8 3.6 7.7E-05 52.8 14.4 55 997-1051 673-727 (1200)
141 COG0194 Gmk Guanylate kinase [ 90.8 0.17 3.7E-06 53.8 2.8 25 293-317 4-28 (191)
142 TIGR00150 HI0065_YjeE ATPase, 90.8 0.39 8.4E-06 48.7 5.2 27 291-317 20-46 (133)
143 KOG4809 Rab6 GTPase-interactin 90.7 10 0.00022 46.1 17.3 35 1001-1035 372-406 (654)
144 KOG0804 Cytoplasmic Zn-finger 90.7 4.4 9.5E-05 48.1 14.2 84 989-1072 369-452 (493)
145 PRK09270 nucleoside triphospha 90.7 0.53 1.2E-05 52.0 6.8 34 289-322 29-62 (229)
146 PRK06762 hypothetical protein; 90.7 0.22 4.7E-06 51.9 3.5 24 294-317 3-26 (166)
147 PRK05541 adenylylsulfate kinas 90.6 0.21 4.6E-06 52.6 3.4 29 291-319 5-33 (176)
148 TIGR03420 DnaA_homol_Hda DnaA 90.5 0.37 7.9E-06 52.7 5.3 38 282-319 27-64 (226)
149 TIGR02173 cyt_kin_arch cytidyl 90.5 0.18 4E-06 52.4 2.8 23 295-317 2-24 (171)
150 KOG4674 Uncharacterized conser 90.4 32 0.0007 48.1 23.6 33 1141-1174 1507-1539(1822)
151 PRK06547 hypothetical protein; 90.3 0.39 8.4E-06 50.9 5.1 29 289-317 11-39 (172)
152 COG4026 Uncharacterized protei 90.3 5.2 0.00011 43.2 13.1 48 1003-1050 143-190 (290)
153 smart00787 Spc7 Spc7 kinetocho 90.3 31 0.00067 40.2 20.8 9 767-775 16-24 (312)
154 cd02020 CMPK Cytidine monophos 90.3 0.21 4.6E-06 50.4 3.0 22 296-317 2-23 (147)
155 KOG0520 Uncharacterized conser 90.3 1.2 2.6E-05 57.6 10.1 83 885-986 793-879 (975)
156 PTZ00301 uridine kinase; Provi 90.2 0.22 4.7E-06 54.6 3.1 23 296-318 6-28 (210)
157 PF15070 GOLGA2L5: Putative go 90.2 5.3 0.00011 50.6 15.6 24 1151-1174 193-216 (617)
158 PRK07261 topology modulation p 90.2 0.21 4.6E-06 52.7 2.9 22 295-316 2-23 (171)
159 PF06705 SF-assemblin: SF-asse 90.2 16 0.00035 41.0 18.1 35 1140-1174 155-189 (247)
160 cd02028 UMPK_like Uridine mono 90.2 0.25 5.4E-06 52.6 3.5 24 296-319 2-25 (179)
161 KOG0946 ER-Golgi vesicle-tethe 90.2 17 0.00037 46.2 19.2 79 993-1075 641-719 (970)
162 KOG4674 Uncharacterized conser 90.1 44 0.00095 46.8 24.5 32 898-929 659-690 (1822)
163 KOG0612 Rho-associated, coiled 90.1 3.1 6.8E-05 54.6 13.4 36 1002-1037 494-529 (1317)
164 PF15619 Lebercilin: Ciliary p 90.1 4.6 0.0001 43.7 13.0 42 1013-1054 58-99 (194)
165 PF05010 TACC: Transforming ac 90.1 9.4 0.0002 41.7 15.3 36 1010-1045 24-59 (207)
166 cd02025 PanK Pantothenate kina 90.1 0.22 4.8E-06 54.9 3.1 24 296-319 2-25 (220)
167 PF07724 AAA_2: AAA domain (Cd 90.0 0.27 5.8E-06 52.1 3.5 25 295-319 5-29 (171)
168 PRK08084 DNA replication initi 89.9 0.45 9.7E-06 52.9 5.4 40 280-319 32-71 (235)
169 PRK00131 aroK shikimate kinase 89.9 0.27 5.8E-06 51.2 3.5 26 292-317 3-28 (175)
170 PRK08118 topology modulation p 89.8 0.26 5.7E-06 51.9 3.2 25 294-318 2-26 (167)
171 PF05483 SCP-1: Synaptonemal c 89.7 15 0.00033 45.8 18.1 70 993-1066 585-654 (786)
172 cd01130 VirB11-like_ATPase Typ 89.7 0.23 4.9E-06 53.1 2.7 26 293-318 25-50 (186)
173 PF13245 AAA_19: Part of AAA d 89.7 0.4 8.6E-06 43.8 3.9 29 292-320 9-37 (76)
174 PF12325 TMF_TATA_bd: TATA ele 89.5 8.2 0.00018 38.5 13.2 25 1140-1164 94-118 (120)
175 PF12846 AAA_10: AAA-like doma 89.5 0.29 6.2E-06 55.5 3.6 30 293-322 1-30 (304)
176 PF05729 NACHT: NACHT domain 89.5 0.3 6.4E-06 50.1 3.4 27 295-321 2-28 (166)
177 TIGR01005 eps_transp_fam exopo 89.5 53 0.0012 43.0 24.7 28 1139-1166 373-400 (754)
178 KOG4643 Uncharacterized coiled 89.5 6.3 0.00014 50.9 15.1 28 1143-1170 426-453 (1195)
179 cd00227 CPT Chloramphenicol (C 89.4 0.3 6.6E-06 51.5 3.4 25 293-317 2-26 (175)
180 PF15619 Lebercilin: Ciliary p 89.4 3 6.4E-05 45.1 10.9 26 1098-1123 166-191 (194)
181 TIGR01843 type_I_hlyD type I s 89.3 4.5 9.8E-05 48.5 13.9 18 1153-1170 253-270 (423)
182 COG0572 Udk Uridine kinase [Nu 89.3 0.29 6.3E-06 53.5 3.2 26 293-318 6-33 (218)
183 TIGR01420 pilT_fam pilus retra 89.3 0.26 5.6E-06 58.0 3.0 27 293-319 122-148 (343)
184 PRK14961 DNA polymerase III su 89.1 0.49 1.1E-05 56.1 5.3 53 263-318 7-63 (363)
185 TIGR02928 orc1/cdc6 family rep 89.1 0.4 8.6E-06 56.6 4.5 37 283-319 30-66 (365)
186 PF03668 ATP_bind_2: P-loop AT 89.1 0.27 5.8E-06 55.8 2.8 20 294-313 2-21 (284)
187 PF09730 BicD: Microtubule-ass 89.0 7.8 0.00017 49.6 15.7 39 1097-1136 122-160 (717)
188 TIGR02782 TrbB_P P-type conjug 89.0 0.3 6.5E-06 56.3 3.3 27 293-319 132-158 (299)
189 smart00787 Spc7 Spc7 kinetocho 89.0 29 0.00064 40.4 19.3 25 1100-1124 236-260 (312)
190 PRK00889 adenylylsulfate kinas 88.9 0.47 1E-05 49.9 4.4 29 292-320 3-31 (175)
191 PRK10078 ribose 1,5-bisphospho 88.9 0.25 5.4E-06 52.7 2.3 22 294-315 3-24 (186)
192 TIGR01313 therm_gnt_kin carboh 88.9 0.24 5.2E-06 51.4 2.2 22 296-317 1-22 (163)
193 KOG0982 Centrosomal protein Nu 88.7 10 0.00022 44.8 15.0 37 1139-1175 374-418 (502)
194 PRK14737 gmk guanylate kinase; 88.6 0.3 6.5E-06 52.4 2.7 25 293-317 4-28 (186)
195 cd00071 GMPK Guanosine monopho 88.6 0.27 5.9E-06 50.0 2.3 23 296-318 2-24 (137)
196 TIGR02524 dot_icm_DotB Dot/Icm 88.6 0.31 6.8E-06 57.6 3.1 29 292-320 133-161 (358)
197 PF15066 CAGE1: Cancer-associa 88.6 40 0.00087 40.5 19.8 48 1101-1155 476-523 (527)
198 PRK03846 adenylylsulfate kinas 88.5 0.59 1.3E-05 50.4 5.0 33 289-321 20-52 (198)
199 PF03266 NTPase_1: NTPase; In 88.5 0.35 7.5E-06 51.1 3.1 51 296-377 2-52 (168)
200 PF12325 TMF_TATA_bd: TATA ele 88.5 5 0.00011 40.0 10.9 80 993-1072 28-113 (120)
201 TIGR00554 panK_bact pantothena 88.5 0.68 1.5E-05 53.1 5.6 31 290-320 59-89 (290)
202 PF00910 RNA_helicase: RNA hel 88.5 0.36 7.8E-06 46.8 2.9 24 296-319 1-24 (107)
203 PF14992 TMCO5: TMCO5 family 88.5 15 0.00032 41.7 15.8 170 993-1174 9-181 (280)
204 cd02024 NRK1 Nicotinamide ribo 88.4 0.31 6.7E-06 52.3 2.7 22 296-317 2-23 (187)
205 cd02027 APSK Adenosine 5'-phos 88.4 0.37 8E-06 49.6 3.1 24 296-319 2-25 (149)
206 PRK14738 gmk guanylate kinase; 88.3 0.36 7.9E-06 52.5 3.2 26 291-316 11-36 (206)
207 PRK08472 fliI flagellum-specif 88.2 2.5 5.4E-05 51.1 10.4 42 276-317 140-181 (434)
208 PF00437 T2SE: Type II/IV secr 88.2 0.29 6.3E-06 55.4 2.4 28 292-319 126-153 (270)
209 PRK13900 type IV secretion sys 88.2 0.46 1E-05 55.6 4.1 30 287-318 156-185 (332)
210 PRK12377 putative replication 88.1 0.73 1.6E-05 51.8 5.5 46 274-321 84-129 (248)
211 KOG4643 Uncharacterized coiled 88.1 29 0.00064 45.2 19.5 119 996-1128 171-289 (1195)
212 TIGR02525 plasmid_TraJ plasmid 88.1 0.36 7.8E-06 57.3 3.1 27 293-319 149-175 (372)
213 PRK04778 septation ring format 88.1 35 0.00076 43.2 20.9 35 1015-1049 281-315 (569)
214 KOG0946 ER-Golgi vesicle-tethe 88.1 4.1 8.9E-05 51.4 12.0 26 490-515 141-166 (970)
215 KOG0804 Cytoplasmic Zn-finger 87.9 6.4 0.00014 46.7 12.9 7 569-575 77-83 (493)
216 PRK06217 hypothetical protein; 87.9 0.36 7.8E-06 51.4 2.8 23 295-317 3-25 (183)
217 PRK10751 molybdopterin-guanine 87.9 0.43 9.3E-06 50.6 3.2 27 295-321 8-34 (173)
218 PF06008 Laminin_I: Laminin Do 87.8 22 0.00047 40.3 17.2 37 1138-1174 170-206 (264)
219 cd01120 RecA-like_NTPases RecA 87.8 0.47 1E-05 48.2 3.5 25 296-320 2-26 (165)
220 PF10168 Nup88: Nuclear pore c 87.7 4.9 0.00011 51.8 13.1 19 679-700 378-398 (717)
221 TIGR03263 guanyl_kin guanylate 87.7 0.31 6.6E-06 51.4 2.1 24 294-317 2-25 (180)
222 COG1340 Uncharacterized archae 87.6 28 0.00061 39.8 17.3 51 996-1046 35-85 (294)
223 PF03205 MobB: Molybdopterin g 87.6 0.46 1E-05 48.6 3.2 27 295-321 2-28 (140)
224 COG0529 CysC Adenylylsulfate k 87.6 0.76 1.7E-05 48.5 4.7 34 289-322 19-52 (197)
225 COG1660 Predicted P-loop-conta 87.5 0.35 7.7E-06 53.7 2.4 19 295-313 3-21 (286)
226 PF13671 AAA_33: AAA domain; P 87.5 0.33 7.1E-06 48.9 2.1 23 296-318 2-24 (143)
227 PF15397 DUF4618: Domain of un 87.4 42 0.00091 37.9 18.4 24 1151-1174 198-221 (258)
228 PF10473 CENP-F_leu_zip: Leuci 87.3 23 0.00049 36.4 15.0 43 1024-1066 95-137 (140)
229 cd00464 SK Shikimate kinase (S 87.3 0.42 9.2E-06 48.7 2.8 23 295-317 1-23 (154)
230 COG1125 OpuBA ABC-type proline 87.2 0.31 6.8E-06 54.1 1.8 28 295-322 29-56 (309)
231 PTZ00112 origin recognition co 87.2 1.2 2.6E-05 57.4 7.0 37 283-319 770-807 (1164)
232 PRK13851 type IV secretion sys 87.1 0.34 7.4E-06 56.9 2.2 26 293-318 162-187 (344)
233 PRK08903 DnaA regulatory inact 87.1 0.95 2.1E-05 49.7 5.6 31 291-321 40-70 (227)
234 PF00038 Filament: Intermediat 87.1 65 0.0014 37.3 27.5 33 1097-1129 217-249 (312)
235 KOG4673 Transcription factor T 87.1 95 0.0021 39.1 26.8 8 888-895 417-424 (961)
236 PRK13764 ATPase; Provisional 87.0 0.59 1.3E-05 58.6 4.3 26 294-319 258-283 (602)
237 TIGR01360 aden_kin_iso1 adenyl 86.9 0.49 1.1E-05 50.0 3.1 23 295-317 5-27 (188)
238 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.8 21 0.00046 36.1 14.6 25 1148-1172 100-124 (132)
239 KOG2128 Ras GTPase-activating 86.8 7.4 0.00016 52.1 13.9 66 888-964 540-612 (1401)
240 PRK00411 cdc6 cell division co 86.8 0.69 1.5E-05 55.2 4.6 36 284-319 46-81 (394)
241 COG1102 Cmk Cytidylate kinase 86.7 0.52 1.1E-05 49.0 2.9 23 296-318 3-25 (179)
242 KOG0018 Structural maintenance 86.5 85 0.0018 41.6 22.5 49 1007-1055 301-349 (1141)
243 cd02021 GntK Gluconate kinase 86.4 0.48 1E-05 48.4 2.6 21 296-316 2-22 (150)
244 PRK14964 DNA polymerase III su 86.4 0.79 1.7E-05 56.3 4.8 55 263-320 4-62 (491)
245 PF10174 Cast: RIM-binding pro 86.3 4.7 0.0001 52.1 11.7 7 760-766 158-164 (775)
246 PF06005 DUF904: Protein of un 86.3 14 0.00031 33.4 11.5 50 1003-1052 5-54 (72)
247 PRK06893 DNA replication initi 86.3 1.1 2.4E-05 49.7 5.5 46 274-321 22-67 (229)
248 PRK07667 uridine kinase; Provi 86.3 1 2.3E-05 48.4 5.2 26 294-319 18-43 (193)
249 PRK12608 transcription termina 86.3 0.74 1.6E-05 54.4 4.3 58 247-319 102-159 (380)
250 PRK12402 replication factor C 86.3 0.87 1.9E-05 52.9 5.0 31 289-319 32-62 (337)
251 KOG0018 Structural maintenance 86.1 1.3E+02 0.0029 39.9 24.2 55 997-1051 298-352 (1141)
252 PRK08727 hypothetical protein; 86.1 1.1 2.3E-05 49.8 5.3 32 290-321 38-69 (233)
253 PF08614 ATG16: Autophagy prot 86.0 10 0.00022 41.0 12.7 72 989-1060 110-181 (194)
254 PRK04182 cytidylate kinase; Pr 86.0 0.53 1.1E-05 49.3 2.7 23 295-317 2-24 (180)
255 TIGR02533 type_II_gspE general 85.9 0.67 1.4E-05 57.1 3.9 35 283-318 233-267 (486)
256 PRK14527 adenylate kinase; Pro 85.9 0.66 1.4E-05 49.7 3.5 28 291-318 4-31 (191)
257 PRK14956 DNA polymerase III su 85.9 0.86 1.9E-05 55.6 4.7 54 264-320 10-67 (484)
258 KOG1003 Actin filament-coating 85.8 15 0.00033 39.2 13.1 54 991-1044 14-67 (205)
259 PHA02544 44 clamp loader, smal 85.7 0.75 1.6E-05 53.2 4.0 28 290-317 40-67 (316)
260 PF15290 Syntaphilin: Golgi-lo 85.7 9.1 0.0002 42.9 11.9 73 1002-1076 68-145 (305)
261 PHA00729 NTP-binding motif con 85.7 1.2 2.5E-05 49.3 5.2 38 280-318 5-42 (226)
262 PRK04040 adenylate kinase; Pro 85.6 0.67 1.5E-05 49.8 3.3 25 294-318 3-27 (188)
263 PF03193 DUF258: Protein of un 85.6 0.44 9.4E-06 49.9 1.8 26 292-317 34-59 (161)
264 PRK09111 DNA polymerase III su 85.5 0.84 1.8E-05 57.5 4.6 32 289-320 42-73 (598)
265 cd02029 PRK_like Phosphoribulo 85.5 0.7 1.5E-05 52.2 3.5 24 296-319 2-25 (277)
266 PRK05057 aroK shikimate kinase 85.5 0.66 1.4E-05 49.0 3.1 25 293-317 4-28 (172)
267 COG0563 Adk Adenylate kinase a 85.5 0.64 1.4E-05 49.6 3.0 22 296-317 3-24 (178)
268 PRK09825 idnK D-gluconate kina 85.2 0.7 1.5E-05 49.1 3.2 26 293-318 3-28 (176)
269 cd03115 SRP The signal recogni 85.2 0.83 1.8E-05 47.9 3.8 27 295-321 2-28 (173)
270 PRK13342 recombination factor 85.2 0.86 1.9E-05 55.1 4.4 43 274-317 18-60 (413)
271 PF09728 Taxilin: Myosin-like 85.1 81 0.0018 36.8 20.1 17 945-962 71-87 (309)
272 KOG0744 AAA+-type ATPase [Post 85.0 0.75 1.6E-05 52.6 3.4 47 274-320 152-204 (423)
273 PRK01156 chromosome segregatio 85.0 1.5E+02 0.0033 39.6 30.1 33 1142-1174 412-444 (895)
274 PRK13894 conjugal transfer ATP 84.9 0.7 1.5E-05 53.8 3.3 27 293-319 148-174 (319)
275 KOG4360 Uncharacterized coiled 84.8 8.4 0.00018 46.4 11.8 26 1149-1174 278-303 (596)
276 TIGR03007 pepcterm_ChnLen poly 84.7 86 0.0019 38.8 21.7 98 1056-1160 276-373 (498)
277 KOG0999 Microtubule-associated 84.7 4.2 9.1E-05 49.1 9.4 190 976-1175 17-241 (772)
278 COG4608 AppF ABC-type oligopep 84.7 0.49 1.1E-05 53.1 1.8 32 291-322 37-68 (268)
279 PRK14730 coaE dephospho-CoA ki 84.7 0.98 2.1E-05 48.8 4.1 48 296-343 4-56 (195)
280 PRK06645 DNA polymerase III su 84.7 1 2.3E-05 55.6 4.8 54 264-320 13-70 (507)
281 PF00261 Tropomyosin: Tropomyo 84.7 72 0.0016 35.6 21.9 13 1146-1158 208-220 (237)
282 COG2805 PilT Tfp pilus assembl 84.7 0.73 1.6E-05 52.3 3.1 73 235-319 71-151 (353)
283 KOG0980 Actin-binding protein 84.6 11 0.00023 48.4 13.2 65 1013-1077 414-481 (980)
284 TIGR00176 mobB molybdopterin-g 84.6 0.88 1.9E-05 47.4 3.5 26 296-321 2-27 (155)
285 TIGR03499 FlhF flagellar biosy 84.5 0.9 1.9E-05 52.0 3.9 29 292-320 193-221 (282)
286 COG1618 Predicted nucleotide k 84.5 2.1 4.6E-05 44.7 6.0 53 294-377 6-58 (179)
287 TIGR01359 UMP_CMP_kin_fam UMP- 84.4 0.73 1.6E-05 48.7 2.9 23 296-318 2-24 (183)
288 PF13555 AAA_29: P-loop contai 84.4 1 2.2E-05 39.5 3.2 21 295-315 25-45 (62)
289 KOG1899 LAR transmembrane tyro 84.4 48 0.001 41.1 17.9 16 993-1008 130-145 (861)
290 PRK14957 DNA polymerase III su 84.3 1.2 2.6E-05 55.5 5.1 54 263-319 7-64 (546)
291 PRK10361 DNA recombination pro 84.3 1.1E+02 0.0025 37.6 21.8 6 1179-1184 200-205 (475)
292 PF07475 Hpr_kinase_C: HPr Ser 84.3 0.72 1.6E-05 48.6 2.7 23 293-315 18-40 (171)
293 PRK14974 cell division protein 84.2 1.6 3.5E-05 51.2 5.9 31 291-321 138-168 (336)
294 PRK00698 tmk thymidylate kinas 84.1 1.1 2.3E-05 48.2 4.1 28 293-320 3-30 (205)
295 PRK00440 rfc replication facto 84.1 1.7 3.6E-05 50.1 6.0 36 283-318 28-63 (319)
296 TIGR03007 pepcterm_ChnLen poly 84.1 33 0.00072 42.4 17.7 28 1101-1128 353-380 (498)
297 PRK06761 hypothetical protein; 84.1 0.7 1.5E-05 52.8 2.7 26 294-319 4-29 (282)
298 PRK15453 phosphoribulokinase; 84.0 0.87 1.9E-05 51.8 3.4 25 293-317 5-29 (290)
299 KOG0924 mRNA splicing factor A 84.0 1.2 2.6E-05 55.0 4.7 112 276-393 357-481 (1042)
300 PF10473 CENP-F_leu_zip: Leuci 83.9 30 0.00064 35.5 13.9 54 1019-1072 83-136 (140)
301 KOG1853 LIS1-interacting prote 83.9 38 0.00082 37.5 15.3 16 1056-1071 106-121 (333)
302 PLN03188 kinesin-12 family pro 83.8 27 0.00058 46.9 16.7 66 1104-1169 1174-1252(1320)
303 PRK04778 septation ring format 83.8 11 0.00023 47.7 13.3 56 995-1050 282-337 (569)
304 PF06160 EzrA: Septation ring 83.8 1.2E+02 0.0026 38.4 22.5 33 1140-1172 401-433 (560)
305 PRK08116 hypothetical protein; 83.8 1.7 3.6E-05 49.5 5.6 47 274-320 94-141 (268)
306 PRK05416 glmZ(sRNA)-inactivati 83.7 0.76 1.6E-05 52.8 2.8 21 293-313 6-26 (288)
307 COG5185 HEC1 Protein involved 83.7 37 0.0008 40.8 16.2 32 1100-1131 491-522 (622)
308 COG1124 DppF ABC-type dipeptid 83.7 0.83 1.8E-05 50.5 2.9 29 291-319 31-59 (252)
309 PF07728 AAA_5: AAA domain (dy 83.6 0.81 1.8E-05 46.0 2.8 22 296-317 2-23 (139)
310 PF00308 Bac_DnaA: Bacterial d 83.6 1.8 3.9E-05 47.6 5.6 41 282-322 21-63 (219)
311 TIGR02881 spore_V_K stage V sp 83.5 1.1 2.4E-05 50.5 4.1 31 291-321 40-70 (261)
312 PF15035 Rootletin: Ciliary ro 83.5 24 0.00053 37.8 13.8 77 1096-1172 102-178 (182)
313 PRK14531 adenylate kinase; Pro 83.5 0.96 2.1E-05 48.2 3.4 24 294-317 3-26 (183)
314 PRK08972 fliI flagellum-specif 83.5 2.9 6.4E-05 50.5 7.7 40 276-315 145-184 (444)
315 COG0802 Predicted ATPase or ki 83.5 1.9 4.1E-05 44.4 5.2 29 291-319 23-51 (149)
316 PF00625 Guanylate_kin: Guanyl 83.4 0.84 1.8E-05 48.5 2.9 25 294-318 3-27 (183)
317 cd01983 Fer4_NifH The Fer4_Nif 83.3 1.2 2.6E-05 40.9 3.6 26 296-321 2-27 (99)
318 COG4172 ABC-type uncharacteriz 83.3 0.64 1.4E-05 54.6 2.0 28 293-320 36-63 (534)
319 PRK08356 hypothetical protein; 83.2 0.77 1.7E-05 49.4 2.5 21 294-314 6-26 (195)
320 PF02367 UPF0079: Uncharacteri 83.2 0.94 2E-05 45.3 2.9 27 291-317 13-39 (123)
321 KOG4593 Mitotic checkpoint pro 83.2 82 0.0018 39.9 19.7 23 907-929 87-109 (716)
322 cd03293 ABC_NrtD_SsuB_transpor 83.1 0.86 1.9E-05 49.8 2.9 27 291-317 28-54 (220)
323 PRK07003 DNA polymerase III su 83.1 2.6 5.7E-05 53.9 7.3 52 264-319 8-64 (830)
324 TIGR00064 ftsY signal recognit 83.1 2.1 4.5E-05 48.8 6.0 46 276-321 46-100 (272)
325 PRK14732 coaE dephospho-CoA ki 83.1 0.82 1.8E-05 49.5 2.6 44 296-343 2-53 (196)
326 PRK10416 signal recognition pa 83.0 1.2 2.7E-05 51.8 4.3 31 291-321 112-142 (318)
327 PRK14528 adenylate kinase; Pro 83.0 1 2.2E-05 48.2 3.3 24 294-317 2-25 (186)
328 COG2884 FtsE Predicted ATPase 83.0 0.85 1.9E-05 48.7 2.6 24 293-316 28-51 (223)
329 PRK14962 DNA polymerase III su 83.0 1.4 3.1E-05 54.1 4.9 52 264-319 6-62 (472)
330 PRK10436 hypothetical protein; 82.9 0.85 1.8E-05 55.7 3.0 36 283-319 209-244 (462)
331 COG1123 ATPase components of v 82.9 0.7 1.5E-05 56.8 2.2 29 292-320 34-62 (539)
332 PF04156 IncA: IncA protein; 82.9 33 0.00071 36.7 14.9 36 999-1034 85-120 (191)
333 TIGR01166 cbiO cobalt transpor 82.9 0.95 2.1E-05 48.3 3.0 25 291-315 16-40 (190)
334 COG4026 Uncharacterized protei 82.8 5.4 0.00012 43.0 8.4 60 992-1051 153-212 (290)
335 TIGR03574 selen_PSTK L-seryl-t 82.8 0.93 2E-05 50.7 3.1 24 296-319 2-25 (249)
336 KOG2991 Splicing regulator [RN 82.8 85 0.0018 35.0 19.1 50 992-1041 112-161 (330)
337 TIGR02673 FtsE cell division A 82.8 0.94 2E-05 49.2 3.0 27 291-317 26-52 (214)
338 PRK14963 DNA polymerase III su 82.8 1.3 2.7E-05 54.9 4.4 45 273-320 19-63 (504)
339 PRK03839 putative kinase; Prov 82.8 0.97 2.1E-05 47.8 3.1 22 296-317 3-24 (180)
340 PF04665 Pox_A32: Poxvirus A32 82.8 0.93 2E-05 50.6 2.9 26 294-319 14-39 (241)
341 PRK01156 chromosome segregatio 82.7 34 0.00073 45.7 18.0 22 851-875 122-143 (895)
342 PRK15093 antimicrobial peptide 82.7 0.91 2E-05 53.1 3.1 27 291-317 31-57 (330)
343 TIGR02788 VirB11 P-type DNA tr 82.7 0.73 1.6E-05 53.4 2.2 26 293-318 144-169 (308)
344 TIGR00455 apsK adenylylsulfate 82.7 1.5 3.3E-05 46.5 4.5 29 291-319 16-44 (184)
345 cd03116 MobB Molybdenum is an 82.7 1.3 2.8E-05 46.3 3.9 28 294-321 2-29 (159)
346 cd01672 TMPK Thymidine monopho 82.6 1.1 2.5E-05 47.4 3.5 24 296-319 3-26 (200)
347 COG1123 ATPase components of v 82.6 0.71 1.5E-05 56.8 2.1 28 292-319 316-343 (539)
348 TIGR00960 3a0501s02 Type II (G 82.6 0.96 2.1E-05 49.3 3.0 27 291-317 27-53 (216)
349 COG4172 ABC-type uncharacteriz 82.5 0.79 1.7E-05 53.9 2.3 31 290-320 310-340 (534)
350 KOG0249 LAR-interacting protei 82.5 26 0.00055 44.1 14.8 52 1021-1072 137-191 (916)
351 PF00005 ABC_tran: ABC transpo 82.5 0.85 1.9E-05 45.6 2.4 26 292-317 10-35 (137)
352 TIGR01005 eps_transp_fam exopo 82.4 27 0.00059 45.6 16.7 14 1057-1070 290-303 (754)
353 PF05701 WEMBL: Weak chloropla 82.4 51 0.0011 41.3 18.2 21 1154-1174 338-358 (522)
354 COG2433 Uncharacterized conser 82.4 12 0.00027 46.2 12.2 20 1147-1166 615-634 (652)
355 PRK15177 Vi polysaccharide exp 82.3 1 2.2E-05 49.3 3.0 28 291-318 11-38 (213)
356 TIGR03185 DNA_S_dndD DNA sulfu 82.3 23 0.00051 45.5 15.7 7 864-870 149-155 (650)
357 PF05557 MAD: Mitotic checkpoi 82.3 2.8 6.1E-05 54.4 7.5 180 991-1173 381-586 (722)
358 TIGR02449 conserved hypothetic 82.2 15 0.00032 32.6 9.5 57 1004-1060 2-58 (65)
359 PRK11308 dppF dipeptide transp 82.2 0.97 2.1E-05 52.9 3.0 27 291-317 39-65 (327)
360 PRK14969 DNA polymerase III su 82.2 1.5 3.3E-05 54.6 4.9 53 264-319 8-64 (527)
361 cd03225 ABC_cobalt_CbiO_domain 82.1 1.1 2.3E-05 48.7 3.1 27 291-317 25-51 (211)
362 cd03259 ABC_Carb_Solutes_like 82.1 1.1 2.3E-05 48.9 3.1 27 291-317 24-50 (213)
363 TIGR02880 cbbX_cfxQ probable R 82.1 1.1 2.4E-05 51.3 3.4 28 295-322 60-87 (284)
364 COG2204 AtoC Response regulato 82.1 1.3 2.8E-05 53.7 4.1 64 291-359 162-232 (464)
365 cd02034 CooC The accessory pro 82.0 1.4 2.9E-05 43.7 3.5 26 296-321 2-27 (116)
366 COG2804 PulE Type II secretory 82.0 1 2.2E-05 54.7 3.1 37 281-319 247-284 (500)
367 cd03260 ABC_PstB_phosphate_tra 81.9 0.95 2.1E-05 49.7 2.7 27 291-317 24-50 (227)
368 PF05701 WEMBL: Weak chloropla 81.9 1.2E+02 0.0025 38.2 21.1 18 1157-1174 313-330 (522)
369 COG4619 ABC-type uncharacteriz 81.9 0.99 2.2E-05 47.3 2.5 25 292-316 28-52 (223)
370 PRK13768 GTPase; Provisional 81.9 1.2 2.7E-05 50.1 3.6 27 295-321 4-30 (253)
371 cd03255 ABC_MJ0796_Lo1CDE_FtsE 81.8 1.1 2.3E-05 48.9 3.0 27 291-317 28-54 (218)
372 TIGR02902 spore_lonB ATP-depen 81.8 1.7 3.6E-05 54.3 5.0 31 288-318 81-111 (531)
373 cd03258 ABC_MetN_methionine_tr 81.7 0.76 1.7E-05 50.7 1.8 27 291-317 29-55 (233)
374 PRK14733 coaE dephospho-CoA ki 81.7 1.2 2.6E-05 48.5 3.3 50 295-344 8-61 (204)
375 PRK09473 oppD oligopeptide tra 81.7 0.97 2.1E-05 52.9 2.8 27 291-317 40-66 (330)
376 TIGR02868 CydC thiol reductant 81.7 0.7 1.5E-05 57.5 1.7 29 291-319 359-387 (529)
377 PF15397 DUF4618: Domain of un 81.7 69 0.0015 36.2 16.9 15 1151-1165 129-143 (258)
378 PHA02530 pseT polynucleotide k 81.7 1 2.2E-05 51.6 3.0 24 294-317 3-26 (300)
379 TIGR00678 holB DNA polymerase 81.6 1.7 3.6E-05 46.4 4.4 37 284-320 4-41 (188)
380 COG1493 HprK Serine kinase of 81.6 1.1 2.5E-05 50.8 3.1 23 294-316 146-168 (308)
381 PRK06620 hypothetical protein; 81.6 1.8 3.9E-05 47.5 4.6 21 294-314 45-65 (214)
382 PLN03025 replication factor C 81.6 1.9 4E-05 50.3 5.1 36 283-318 24-59 (319)
383 PF06818 Fez1: Fez1; InterPro 81.6 33 0.00072 37.2 13.8 30 1097-1126 132-161 (202)
384 TIGR03608 L_ocin_972_ABC putat 81.5 1.1 2.4E-05 48.3 3.0 25 292-316 23-47 (206)
385 PRK04220 2-phosphoglycerate ki 81.5 1.7 3.6E-05 50.1 4.5 28 290-317 89-116 (301)
386 PRK09112 DNA polymerase III su 81.4 1.9 4.1E-05 51.0 5.1 39 281-319 32-71 (351)
387 cd03292 ABC_FtsE_transporter F 81.4 1.1 2.4E-05 48.6 3.0 27 291-317 25-51 (214)
388 PRK15079 oligopeptide ABC tran 81.4 1.1 2.3E-05 52.6 3.0 27 291-317 45-71 (331)
389 cd03296 ABC_CysA_sulfate_impor 81.3 1.1 2.5E-05 49.6 3.0 27 291-317 26-52 (239)
390 cd03229 ABC_Class3 This class 81.3 1.2 2.6E-05 47.1 3.1 27 291-317 24-50 (178)
391 PF01695 IstB_IS21: IstB-like 81.3 2.1 4.6E-05 45.5 4.9 30 291-320 45-74 (178)
392 PLN02318 phosphoribulokinase/u 81.2 1.7 3.6E-05 54.2 4.6 44 274-317 45-89 (656)
393 PRK02496 adk adenylate kinase; 81.2 1.2 2.6E-05 47.2 3.1 22 296-317 4-25 (184)
394 TIGR00152 dephospho-CoA kinase 81.1 1.4 2.9E-05 47.2 3.4 46 296-342 2-53 (188)
395 KOG4673 Transcription factor T 81.0 1.7E+02 0.0036 37.1 26.4 57 997-1053 706-762 (961)
396 cd02026 PRK Phosphoribulokinas 81.0 1.1 2.5E-05 50.9 3.0 22 296-317 2-23 (273)
397 cd01124 KaiC KaiC is a circadi 80.9 1.3 2.9E-05 46.6 3.3 27 295-321 1-27 (187)
398 PRK09087 hypothetical protein; 80.9 1.9 4.1E-05 47.8 4.6 24 292-315 43-66 (226)
399 PRK11022 dppD dipeptide transp 80.8 1.1 2.5E-05 52.3 2.9 28 291-318 31-58 (326)
400 PF09744 Jnk-SapK_ap_N: JNK_SA 80.8 26 0.00057 36.7 12.5 51 1019-1069 53-103 (158)
401 PF09730 BicD: Microtubule-ass 80.8 34 0.00074 44.0 15.8 55 1011-1069 267-321 (717)
402 PF00448 SRP54: SRP54-type pro 80.7 1.4 3E-05 47.7 3.4 28 293-320 1-28 (196)
403 cd03235 ABC_Metallic_Cations A 80.7 1.1 2.5E-05 48.6 2.8 26 291-316 23-48 (213)
404 PRK10884 SH3 domain-containing 80.7 17 0.00037 39.8 11.6 26 1024-1049 119-144 (206)
405 PRK05896 DNA polymerase III su 80.7 1.9 4.1E-05 54.1 4.8 54 263-320 7-65 (605)
406 cd03224 ABC_TM1139_LivF_branch 80.7 1.3 2.7E-05 48.5 3.1 25 291-315 24-48 (222)
407 PF14915 CCDC144C: CCDC144C pr 80.6 22 0.00047 40.6 12.5 76 1100-1175 218-300 (305)
408 PRK14950 DNA polymerase III su 80.6 1.9 4.1E-05 54.5 5.0 54 264-320 8-65 (585)
409 PRK07952 DNA replication prote 80.6 1.8 4E-05 48.5 4.3 29 293-321 99-127 (244)
410 PRK05537 bifunctional sulfate 80.5 2.5 5.5E-05 53.1 6.0 44 274-319 375-418 (568)
411 PLN02796 D-glycerate 3-kinase 80.5 1.2 2.7E-05 52.1 3.0 24 295-318 102-125 (347)
412 PRK05342 clpX ATP-dependent pr 80.5 1.9 4.1E-05 52.0 4.7 61 257-317 59-132 (412)
413 smart00072 GuKc Guanylate kina 80.4 1.2 2.6E-05 47.4 2.7 23 295-317 4-26 (184)
414 TIGR02538 type_IV_pilB type IV 80.4 1.2 2.5E-05 56.2 3.0 26 293-318 316-341 (564)
415 PRK10646 ADP-binding protein; 80.4 2.9 6.2E-05 43.5 5.3 26 293-318 28-53 (153)
416 PF09755 DUF2046: Uncharacteri 80.3 1.2E+02 0.0026 35.1 18.7 20 1054-1073 112-131 (310)
417 TIGR03864 PQQ_ABC_ATP ABC tran 80.3 1.3 2.8E-05 49.0 3.1 26 291-316 25-50 (236)
418 KOG4302 Microtubule-associated 80.3 44 0.00096 42.5 16.4 117 1053-1174 122-261 (660)
419 PRK00023 cmk cytidylate kinase 80.3 1.3 2.9E-05 48.9 3.1 26 293-318 4-29 (225)
420 cd03256 ABC_PhnC_transporter A 80.2 1.3 2.8E-05 49.1 3.0 27 291-317 25-51 (241)
421 PF04849 HAP1_N: HAP1 N-termin 80.2 30 0.00065 39.9 13.7 71 990-1060 222-292 (306)
422 PRK09099 type III secretion sy 80.2 4.8 0.0001 48.9 7.9 39 277-315 147-185 (441)
423 PRK03731 aroL shikimate kinase 80.1 1.5 3.2E-05 45.9 3.2 25 294-318 3-27 (171)
424 PRK04195 replication factor C 80.1 1.7 3.6E-05 53.7 4.2 27 291-317 37-63 (482)
425 TIGR02640 gas_vesic_GvpN gas v 80.1 2.1 4.5E-05 48.5 4.6 40 274-316 5-44 (262)
426 cd03268 ABC_BcrA_bacitracin_re 80.0 1.4 3E-05 47.8 3.1 26 291-316 24-49 (208)
427 TIGR02315 ABC_phnC phosphonate 80.0 1.3 2.9E-05 49.1 3.0 27 291-317 26-52 (243)
428 PF01637 Arch_ATPase: Archaeal 80.0 1.2 2.6E-05 48.2 2.6 33 285-317 12-44 (234)
429 cd03297 ABC_ModC_molybdenum_tr 80.0 1.4 3E-05 48.0 3.0 26 291-317 22-47 (214)
430 TIGR02903 spore_lon_C ATP-depe 79.9 2.2 4.8E-05 54.2 5.2 34 286-319 168-201 (615)
431 cd03265 ABC_DrrA DrrA is the A 79.9 1.4 3E-05 48.2 3.1 24 292-315 25-48 (220)
432 PF00158 Sigma54_activat: Sigm 79.9 1.3 2.9E-05 46.7 2.8 25 291-315 20-44 (168)
433 PRK11176 lipid transporter ATP 79.8 1.1 2.3E-05 56.6 2.4 29 291-319 367-395 (582)
434 PRK14958 DNA polymerase III su 79.8 2.1 4.5E-05 53.1 4.9 53 263-319 7-64 (509)
435 PF13479 AAA_24: AAA domain 79.8 1.2 2.6E-05 48.8 2.5 22 292-313 2-23 (213)
436 COG1136 SalX ABC-type antimicr 79.7 1.2 2.6E-05 49.1 2.5 22 292-313 30-51 (226)
437 PRK14530 adenylate kinase; Pro 79.7 1.4 3.1E-05 48.1 3.1 24 295-318 5-28 (215)
438 TIGR02680 conserved hypothetic 79.7 44 0.00095 46.7 17.8 202 951-1173 727-941 (1353)
439 PF08826 DMPK_coil: DMPK coile 79.7 27 0.00059 30.7 10.2 29 1024-1052 26-54 (61)
440 TIGR01184 ntrCD nitrate transp 79.6 1.4 3E-05 48.7 3.0 26 292-317 10-35 (230)
441 cd03219 ABC_Mj1267_LivG_branch 79.6 1.3 2.9E-05 48.8 2.8 26 291-316 24-49 (236)
442 cd03223 ABCD_peroxisomal_ALDP 79.6 1.5 3.2E-05 46.0 3.0 28 291-318 25-52 (166)
443 cd03266 ABC_NatA_sodium_export 79.6 1.4 3.1E-05 48.0 3.1 25 291-315 29-53 (218)
444 cd03269 ABC_putative_ATPase Th 79.6 1.4 3.1E-05 47.7 3.1 25 292-316 25-49 (210)
445 PRK11124 artP arginine transpo 79.6 1.4 3.1E-05 48.9 3.1 25 291-315 26-50 (242)
446 PRK13539 cytochrome c biogenes 79.6 1.4 3.1E-05 47.7 3.1 25 291-315 26-50 (207)
447 PRK13695 putative NTPase; Prov 79.5 1.6 3.5E-05 45.9 3.3 24 296-319 3-26 (174)
448 cd03262 ABC_HisP_GlnQ_permease 79.5 1.4 3.1E-05 47.7 3.0 27 291-317 24-50 (213)
449 cd03226 ABC_cobalt_CbiO_domain 79.5 1.4 3.1E-05 47.6 2.9 26 291-316 24-49 (205)
450 COG2274 SunT ABC-type bacterio 79.5 1.3 2.8E-05 57.0 3.0 28 292-319 498-525 (709)
451 PRK13947 shikimate kinase; Pro 79.5 1.6 3.4E-05 45.6 3.2 23 295-317 3-25 (171)
452 TIGR03238 dnd_assoc_3 dnd syst 79.5 1.8 3.9E-05 52.6 4.0 37 275-311 9-50 (504)
453 TIGR00041 DTMP_kinase thymidyl 79.3 1.7 3.8E-05 46.3 3.5 27 293-319 3-29 (195)
454 PRK06315 type III secretion sy 79.3 3.4 7.4E-05 50.2 6.3 41 277-317 148-188 (442)
455 PF01580 FtsK_SpoIIIE: FtsK/Sp 79.2 1.5 3.3E-05 47.3 3.1 26 295-320 40-65 (205)
456 COG1126 GlnQ ABC-type polar am 79.2 1.5 3.2E-05 47.9 2.9 22 292-313 27-48 (240)
457 KOG0243 Kinesin-like protein [ 79.2 1.4E+02 0.003 39.9 20.6 23 288-310 124-146 (1041)
458 PRK07721 fliI flagellum-specif 79.2 7.6 0.00016 47.3 9.2 42 276-317 141-182 (438)
459 PRK05428 HPr kinase/phosphoryl 79.1 1.5 3.2E-05 50.7 3.0 24 293-316 146-169 (308)
460 cd03230 ABC_DR_subfamily_A Thi 79.1 1.5 3.4E-05 46.0 3.0 26 291-316 24-49 (173)
461 PRK10908 cell division protein 79.1 1.5 3.3E-05 48.0 3.1 26 291-316 26-51 (222)
462 PF15294 Leu_zip: Leucine zipp 79.1 25 0.00055 39.9 12.5 81 993-1073 130-226 (278)
463 PF13173 AAA_14: AAA domain 79.1 1.8 3.8E-05 43.2 3.3 26 293-318 2-27 (128)
464 TIGR00972 3a0107s01c2 phosphat 79.0 1.5 3.2E-05 48.9 3.0 26 291-316 25-50 (247)
465 PRK06526 transposase; Provisio 78.9 1.7 3.8E-05 49.0 3.5 30 292-321 97-126 (254)
466 cd03245 ABCC_bacteriocin_expor 78.9 1.5 3.3E-05 47.8 3.0 25 291-315 28-52 (220)
467 TIGR00017 cmk cytidylate kinas 78.8 1.7 3.6E-05 47.9 3.3 24 295-318 4-27 (217)
468 TIGR01978 sufC FeS assembly AT 78.8 1.5 3.3E-05 48.6 3.0 26 291-316 24-49 (243)
469 PLN02348 phosphoribulokinase 78.8 2.5 5.5E-05 50.3 4.9 28 292-319 48-75 (395)
470 TIGR03410 urea_trans_UrtE urea 78.8 1 2.3E-05 49.5 1.7 27 291-317 24-50 (230)
471 cd03238 ABC_UvrA The excision 78.7 1.6 3.5E-05 46.4 3.0 23 292-314 20-42 (176)
472 PRK10584 putative ABC transpor 78.7 1.6 3.4E-05 48.0 3.0 27 291-317 34-60 (228)
473 PRK09435 membrane ATPase/prote 78.7 3.4 7.4E-05 48.4 5.9 32 290-321 53-84 (332)
474 cd03218 ABC_YhbG The ABC trans 78.6 1.6 3.5E-05 48.1 3.1 26 291-316 24-49 (232)
475 PF14532 Sigma54_activ_2: Sigm 78.6 0.97 2.1E-05 45.8 1.3 26 291-316 19-44 (138)
476 PRK05642 DNA replication initi 78.6 3.2 7E-05 46.1 5.5 27 294-320 46-72 (234)
477 TIGR02211 LolD_lipo_ex lipopro 78.6 1.6 3.5E-05 47.7 3.1 26 291-316 29-54 (221)
478 PRK05922 type III secretion sy 78.6 5 0.00011 48.6 7.4 43 275-317 139-181 (434)
479 PRK11629 lolD lipoprotein tran 78.6 1.6 3.4E-05 48.2 3.0 26 291-316 33-58 (233)
480 cd03294 ABC_Pro_Gly_Bertaine T 78.6 1.6 3.4E-05 49.6 3.0 27 291-317 48-74 (269)
481 cd03270 ABC_UvrA_I The excisio 78.6 1.6 3.4E-05 48.2 3.0 21 291-311 19-39 (226)
482 cd03301 ABC_MalK_N The N-termi 78.4 1.6 3.6E-05 47.3 3.1 27 291-317 24-50 (213)
483 PRK08154 anaerobic benzoate ca 78.4 2.5 5.4E-05 49.1 4.7 42 276-317 116-157 (309)
484 PRK11248 tauB taurine transpor 78.4 1.6 3.4E-05 49.1 3.0 26 292-317 26-51 (255)
485 PRK07994 DNA polymerase III su 78.4 2.6 5.5E-05 53.6 5.1 54 263-320 7-65 (647)
486 PF06414 Zeta_toxin: Zeta toxi 78.4 1.7 3.8E-05 46.8 3.2 30 289-318 11-40 (199)
487 PRK14955 DNA polymerase III su 78.4 2.6 5.6E-05 50.7 5.0 37 283-319 27-64 (397)
488 PRK14242 phosphate transporter 78.3 1.6 3.4E-05 48.9 3.0 26 291-316 30-55 (253)
489 TIGR02858 spore_III_AA stage I 78.3 1.7 3.7E-05 49.4 3.3 41 279-319 97-137 (270)
490 CHL00081 chlI Mg-protoporyphyr 78.3 2.6 5.6E-05 49.7 4.8 31 290-320 35-65 (350)
491 PRK00081 coaE dephospho-CoA ki 78.3 1.6 3.4E-05 47.1 2.8 50 294-344 3-57 (194)
492 PRK14949 DNA polymerase III su 78.2 2.5 5.4E-05 55.0 4.9 52 263-317 7-62 (944)
493 TIGR02770 nickel_nikD nickel i 78.1 1.6 3.5E-05 48.1 2.9 24 291-314 10-33 (230)
494 PRK13541 cytochrome c biogenes 78.1 1.7 3.7E-05 46.6 3.1 24 291-314 24-47 (195)
495 KOG0922 DEAH-box RNA helicase 78.1 2.2 4.8E-05 53.0 4.3 40 276-321 52-91 (674)
496 PRK05688 fliI flagellum-specif 78.1 4.5 9.7E-05 49.2 6.8 118 158-316 49-191 (451)
497 cd03237 ABC_RNaseL_inhibitor_d 78.1 1.7 3.6E-05 48.8 3.1 24 291-314 23-46 (246)
498 PRK14734 coaE dephospho-CoA ki 78.0 1.8 3.9E-05 46.9 3.2 47 296-343 4-55 (200)
499 COG2433 Uncharacterized conser 78.0 20 0.00043 44.4 12.0 94 996-1117 416-509 (652)
500 PRK05563 DNA polymerase III su 77.9 2.6 5.6E-05 53.0 5.0 51 264-317 8-62 (559)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2e-207 Score=1892.18 Aligned_cols=781 Identities=45% Similarity=0.733 Sum_probs=714.2
Q ss_pred CCcEEEEEcCCCCEEEEEEEeecC--CeEEEE--ecCCcEEEEeCCCcc--cCCCCccCCcCccccCCCCCchhHHHHHH
Q 001002 157 KKLRVWCRLEDGKWESGMIQSTSG--DEAFVL--LSNGNVVKVSTGELL--PANPDILEGVDDLIQLSYLNEPSVLNNIQ 230 (1193)
Q Consensus 157 ~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~--~~~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~LnE~svL~~L~ 230 (1193)
.|..||+|+.+..|..|.|.+..- +.++-. ..+|....|....+. ..+||++++||||+.|+|||||+|||||+
T Consensus 8 ~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL~ 87 (1463)
T COG5022 8 VGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNLE 87 (1463)
T ss_pred cCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHHH
Confidence 488999999999999999988643 333322 235655556555443 34577999999999999999999999999
Q ss_pred HHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhh
Q 001002 231 YRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTE 308 (1193)
Q Consensus 231 ~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe 308 (1193)
+||.+++||||.|-||||||||+.+|||+++++..|.++... +|||||||+.||+.|...++||||||||||||||||
T Consensus 88 kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe 167 (1463)
T COG5022 88 KRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTE 167 (1463)
T ss_pred HHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchH
Confidence 999999999999999999999999999999999999988765 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCc----cHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccee
Q 001002 309 TAKFAMQYLAALGGGSE----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRV 384 (1193)
Q Consensus 309 t~k~il~yL~~~~~~~~----~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksRV 384 (1193)
+||.||+|||+++++++ .|+.+||++||||||||||||+||||||||||||+|.||.+|.|+||+|++||||||||
T Consensus 168 ~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRV 247 (1463)
T COG5022 168 NAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRV 247 (1463)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhh
Confidence 99999999999988765 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHHH
Q 001002 385 VQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAML 464 (1193)
Q Consensus 385 v~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~il 464 (1193)
|+|+.+|||||||||||+|++...++.+++..+.+|.||++++|..++|+||+++|+.|+.||.+|||+.++|.+||+||
T Consensus 248 V~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iL 327 (1463)
T COG5022 248 VHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKIL 327 (1463)
T ss_pred ccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999998888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEecCCHHHHHHHHHHHHHHHHH
Q 001002 465 AAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYG 544 (1193)
Q Consensus 465 aAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rdalak~LY~ 544 (1193)
|||||||||+|..+ .++.+.+.+.+.++.||.|||||+..|.++|+.|.|++|+|.|.+++|..||..+||||||+||+
T Consensus 328 AaILhiGNIef~~~-r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~ 406 (1463)
T COG5022 328 AAILHIGNIEFKED-RNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYS 406 (1463)
T ss_pred HHHHhhcceeeeec-ccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999964 34567788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeecc
Q 001002 545 SLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVE 624 (1193)
Q Consensus 545 ~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~ 624 (1193)
+||+|||++||.+|..+.. ..+|||||||||||+|++|||||||||||||||||+||+|||++||++|.+|||+|++|+
T Consensus 407 ~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Id 485 (1463)
T COG5022 407 NLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFID 485 (1463)
T ss_pred HHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 9999999999999987654 568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhc-CCCccccccccccCCCCCChHHHHHHHHHHhC--CCCccccCC--CCceEEeecCccccccccchh
Q 001002 625 FEDNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGER--GRAFSIRHYAGEVPYDTNGFL 699 (1193)
Q Consensus 625 f~dn~~~l~lie~-~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl 699 (1193)
|.|||+||||||+ .|.|||++|||||.+|.|||++|..||.+.+. +++.|.++| ...|+|.||||+|.|+|+||+
T Consensus 486 y~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~l 565 (1463)
T COG5022 486 YFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFL 565 (1463)
T ss_pred cccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchh
Confidence 9999999999997 48999999999999999999999999999886 567888775 568999999999999999999
Q ss_pred hhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHHHhccCCeeeEec
Q 001002 700 EKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCI 778 (1193)
Q Consensus 700 ~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCI 778 (1193)
+||+|+++.+++.||..|+++++ .+|.......+ ..+++|+++.||.||+.||++|++|+|||||||
T Consensus 566 dKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~------------K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCI 633 (1463)
T COG5022 566 DKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES------------KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCI 633 (1463)
T ss_pred hhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc------------cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEee
Confidence 99999999999999999999875 68873321111 246799999999999999999999999999999
Q ss_pred CCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccC------CChHHHHHHHHHHcC
Q 001002 779 KPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS------QDPLSISVAVLQQFN 852 (1193)
Q Consensus 779 kPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~iL~~~~ 852 (1193)
|||..|.|+.||..+|++|||||||||+|||+|+|||.|++|++|+.||++|.|...-. .|.+.+|..||....
T Consensus 634 kPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~ 713 (1463)
T COG5022 634 KPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELV 713 (1463)
T ss_pred CCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999965432 356889999999999
Q ss_pred CCccccccCceeeeeecchhhhhhhhhhhHHH-HHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 001002 853 VLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKS 931 (1193)
Q Consensus 853 i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~-aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~ 931 (1193)
++...||+|.|||||+.|+++.||.+|...++ .++.||+.|||+..|++|......+..||...+|+..|+........
T Consensus 714 id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~ 793 (1463)
T COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKW 793 (1463)
T ss_pred CChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHH
Confidence 99999999999999999999999999998886 67899999999999999999998899999988888888765433322
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 932 CSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 932 aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
.+++++|+.||....|++++
T Consensus 794 -------------~~~~~l~~~~~~~~~r~~~~ 813 (1463)
T COG5022 794 -------------RLFIKLQPLLSLLGSRKEYR 813 (1463)
T ss_pred -------------HhHHHhhHHhHHHhhHHHHH
Confidence 34456666666655555555
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=8.1e-201 Score=1848.96 Aligned_cols=750 Identities=31% Similarity=0.510 Sum_probs=700.3
Q ss_pred EEEcCCCCEEEEEEE-eecCCeEEEEe---cCCcEEEEeCCCcccCCCCc-cCCcCccccCCCCCchhHHHHHHHHHhcC
Q 001002 162 WCRLEDGKWESGMIQ-STSGDEAFVLL---SNGNVVKVSTGELLPANPDI-LEGVDDLIQLSYLNEPSVLNNIQYRYSRD 236 (1193)
Q Consensus 162 w~~~~~~~~~~~~v~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~ 236 (1193)
|.++++..|..|.|+ +..++.++|.. ++|++++|+.++++++||+. +++++||+.|+|||||+|||||+.||.+|
T Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~ 123 (821)
T PTZ00014 44 VKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPCVLDFLKHRYLKN 123 (821)
T ss_pred CCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHHHHHHHHHHHcCC
Confidence 346788999999999 88899998874 47999999999999999997 78899999999999999999999999999
Q ss_pred CccccCCCceEecCCCCcCCCCChHHHHHHhccC---CCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH
Q 001002 237 MIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV---MDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 237 ~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~---~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i 313 (1193)
+||||+|++|||||||+.+|+|+++++..|++.. ..|||||+||+.||+.|...++||||||||||||||||+||+|
T Consensus 124 ~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i 203 (821)
T PTZ00014 124 QIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQI 203 (821)
T ss_pred CCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHH
Confidence 9999999999999999999999999999999753 2489999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC--ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccceeeeccCCC
Q 001002 314 MQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGE 391 (1193)
Q Consensus 314 l~yL~~~~~~~--~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gE 391 (1193)
|+|||..+++. ..|+++|+++||||||||||||+||||||||||||+|+|+.+|.|+||+|.+|||||||||+|++||
T Consensus 204 m~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gE 283 (821)
T PTZ00014 204 MRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDE 283 (821)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCC
Confidence 99999987653 3699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc
Q 001002 392 RSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLG 471 (1193)
Q Consensus 392 rnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLG 471 (1193)
||||||||||+|+++++|++|+|.++.+|+||+++ |..++++||+++|..|+.||++|||+++++..||+|||||||||
T Consensus 284 RNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLG 362 (821)
T PTZ00014 284 RSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPK-CLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLG 362 (821)
T ss_pred CCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCC-CccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999965 89999999999999999999999999999999999999999999
Q ss_pred CceeeeeCC---CcceeecC--hHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEecCCHHHHHHHHHHHHHHHHHHH
Q 001002 472 NISFQVIDN---ENHVEVIA--DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSL 546 (1193)
Q Consensus 472 ni~F~~~~~---~~~~~~~~--~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rdalak~LY~~L 546 (1193)
||+|...+. ++.+.+.+ .+.++.||.||||++++|.++|+++++.+|++.+.+++|++||.++||||||+||++|
T Consensus 363 Ni~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rL 442 (821)
T PTZ00014 363 NVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKL 442 (821)
T ss_pred ceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999986432 23455544 5589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeecccc
Q 001002 547 FDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE 626 (1193)
Q Consensus 547 F~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~ 626 (1193)
|+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||++|.+|||+|+.|+|.
T Consensus 443 F~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~ 521 (821)
T PTZ00014 443 FLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYT 521 (821)
T ss_pred HHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCC
Confidence 9999999999998753 345799999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC---CCceEEeecCccccccccchhhhcC
Q 001002 627 DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAFSIRHYAGEVPYDTNGFLEKNR 703 (1193)
Q Consensus 627 dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~---~~~F~I~HyaG~V~Y~~~gfl~KN~ 703 (1193)
||++|||||+++|.|||+||||||++|++||.+|++||++++++|++|..++ ...|+|+||||+|+|+++||++||+
T Consensus 522 dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNk 601 (821)
T PTZ00014 522 SNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNK 601 (821)
T ss_pred CcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhcc
Confidence 9999999999999999999999999999999999999999999999998764 4799999999999999999999999
Q ss_pred CcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCC
Q 001002 704 DPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNS 782 (1193)
Q Consensus 704 D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~ 782 (1193)
|+|+++++++|++|+++++ .+|....... +...+..||+++|+.||+.||++|++|+||||||||||+
T Consensus 602 D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~ 670 (821)
T PTZ00014 602 DVLRPELVEVVKASPNPLVRDLFEGVEVEK-----------GKLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNE 670 (821)
T ss_pred ccchHHHHHHHHhCccHHHHHHhccccccc-----------ccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCc
Confidence 9999999999999999976 5886432111 012234799999999999999999999999999999999
Q ss_pred CCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccccc--CCChHHHHHHHHHHcCCCcccccc
Q 001002 783 KQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQV 860 (1193)
Q Consensus 783 ~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~i~~~~yqi 860 (1193)
.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.+.... ..|++..|+.||..+++++..|++
T Consensus 671 ~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~i 750 (821)
T PTZ00014 671 NKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAI 750 (821)
T ss_pred ccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEe
Confidence 999999999999999999999999999999999999999999999999876543 348999999999999999999999
Q ss_pred CceeeeeecchhhhhhhhhhhHHH----HHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001002 861 GYTKLYLRSGQLAALEDRRKQVLQ----AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1193)
Q Consensus 861 GkTKVFlr~g~l~~LE~~R~~~l~----aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~ 924 (1193)
|+||||||.+++..||..|...+. .+..||++||||++|++|++++.++++||++||+|++++.
T Consensus 751 GkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 751 GKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred cCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998776653 5679999999999999999999999999999999999874
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-196 Score=1876.60 Aligned_cols=1015 Identities=36% Similarity=0.555 Sum_probs=825.9
Q ss_pred cccccCCCCcccccccchhccCCcEEEEEcCCCCEEEEEEEeecCCeEEEEecCCcEEE-EeCCCcccCCCCccCCcCcc
Q 001002 136 EMKSAKSGEVEWEDNLGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVK-VSTGELLPANPDILEGVDDL 214 (1193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~~~Dl 214 (1193)
+|++.......-..+.+|+. +.+||||+++++|+.|.|++..|+.|+|.+.+|.+++ |+.++++|+|||.|+.++||
T Consensus 10 ~~lr~~~~~~~~~~~~~~d~--kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDM 87 (1930)
T KOG0161|consen 10 KYLRVSREERLDAQSRPFDS--KKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDM 87 (1930)
T ss_pred hhhcccHHHhhcccccchhh--cceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccH
Confidence 44444443333333456665 4699999999999999999998888999999888887 99999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHHHHhhcCC
Q 001002 215 IQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMMGDGV 292 (1193)
Q Consensus 215 ~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m~~~~~ 292 (1193)
+.|+|||||||||||++||.+++||||+|.+||+||||+++|||+++++.+|+++.. .||||||||+.||+.|+.++.
T Consensus 88 a~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~re 167 (1930)
T KOG0161|consen 88 AELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRE 167 (1930)
T ss_pred HHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999854 489999999999999999999
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC-------ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcC
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGS-------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSA 365 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~~~~-------~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~ 365 (1193)
||||+|+|||||||||+||.||+|||.+++++ +.++++|+++||||||||||+|++|+|||||||||+|+|+.
T Consensus 168 nQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~ 247 (1930)
T KOG0161|consen 168 NQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDA 247 (1930)
T ss_pred CceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCC
Confidence 99999999999999999999999999998753 58999999999999999999999999999999999999999
Q ss_pred CCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCC-CCCCccccCCCccccCCcchHHHHHHHH
Q 001002 366 FGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFHNLM 444 (1193)
Q Consensus 366 ~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~l~ 444 (1193)
+|.|+||.|++||||||||++|++|||||||||||++|+++.++..|.|.+ +.+|.|+.++.. .+||+||+++|..+.
T Consensus 248 ~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~ 326 (1930)
T KOG0161|consen 248 TGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETD 326 (1930)
T ss_pred CCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999965 999999999876 999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEe
Q 001002 445 EALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAK 524 (1193)
Q Consensus 445 ~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~ 524 (1193)
.||++|||+++++.+||+|+||||||||+.|....+.+.+.+.+.+.++.||.||||+..+|.++++++++++|++.+.+
T Consensus 327 ~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k 406 (1930)
T KOG0161|consen 327 EAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSK 406 (1930)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhh
Confidence 99999999999999999999999999999999877778899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHh
Q 001002 525 KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRH 604 (1193)
Q Consensus 525 ~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~ 604 (1193)
..+.+|+..+..+|||++|++||.|||.+||.+|... .....|||||||+|||+|+.||||||||||+||+||||||+|
T Consensus 407 ~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~ 485 (1930)
T KOG0161|consen 407 AQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHH 485 (1930)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcch
Confidence 9999999999999999999999999999999999976 456789999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCcceeecccc-ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC----
Q 001002 605 LFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER---- 678 (1193)
Q Consensus 605 ~f~~eq~eY~~EgI~~~~i~f~-dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~---- 678 (1193)
||.+||++|.+|||.|++|+|. |-++|++||++ |+||||+|||||++|++||.+|+.||...| ++||.|.+++
T Consensus 486 mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~ 564 (1930)
T KOG0161|consen 486 MFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKA 564 (1930)
T ss_pred hhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccc
Confidence 9999999999999999999997 99999999996 689999999999999999999999999877 8999999884
Q ss_pred CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHH-HHHhhcccCCCCCCCCCCCC-CCCCCccccchHHHH
Q 001002 679 GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQ-PGALDTQKQSVGTKF 756 (1193)
Q Consensus 679 ~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~-~~lf~~~~~~~~~~~~~~~~-~~~~~~~~~tv~~~f 756 (1193)
+.+|.|.||||+|.|++.|||+||+||++..++.+|..|++.+ ..+|.+....+... ..|.. ..+..+.+.||+..|
T Consensus 565 ~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~-~~~~~~~~~K~g~F~Tvs~~~ 643 (1930)
T KOG0161|consen 565 EAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAA-KGGEALKKTKKGSFRTVSQLY 643 (1930)
T ss_pred hhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhh-hhhhhhcccCCcchhhHHHHH
Confidence 4799999999999999999999999999999999999988775 47887732211100 00000 112234578999999
Q ss_pred HHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccccc
Q 001002 757 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1193)
Q Consensus 757 k~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~ 836 (1193)
+.||+.||++|++|+|||||||.||+.+.||.+|.++|+.||||.||||+|||+|.|||+|++|.+|..||.++.+....
T Consensus 644 keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~ 723 (1930)
T KOG0161|consen 644 KEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPK 723 (1930)
T ss_pred HHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999954444433
Q ss_pred C--CChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHH-HHHHHHHHhhhhHhHHhhhhh---hHHH
Q 001002 837 S--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELC---NGVI 910 (1193)
Q Consensus 837 ~--~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~a-ai~IQ~~~Rg~laRk~y~~~r---~a~i 910 (1193)
. .|.+..|..|+..+.++...|++|.|||||+.|+++.||..|...+.. ++.+|+.||||++|+.|.++. .|+.
T Consensus 724 ~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~ 803 (1930)
T KOG0161|consen 724 KGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIK 803 (1930)
T ss_pred ccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 477899999999999999999999999999999999999999998875 568999999999999999984 7999
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--hhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHhHhhcchHHHHHHHhcccc
Q 001002 911 TLQSFARGENTRRRHASLGKS--CSAVVPEIRD--EQLREIICLQSAIRGWLVRKQLKMHKLKQSNPVNAKVKRRSGRKS 986 (1193)
Q Consensus 911 ~IQs~~Rg~~aRr~~~~~r~~--aa~~IQ~~~~--~~~~aai~IQs~~R~~laRr~~~l~~~~~~~q~~lr~~~ke~k~l 986 (1193)
+||+++|.|+..|.|.||+.+ ..+.|+.... ....-.-.|+.. +.-+.+-+-.... ......++
T Consensus 804 ~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l-~~~l~~~e~~~~e-----------le~~~~~~ 871 (1930)
T KOG0161|consen 804 VIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKL-KEELQKSESKRKE-----------LEEKLVKL 871 (1930)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHH
Confidence 999999999999999999997 5555555441 000000111111 0001100000000 00000111
Q ss_pred cccccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 001002 987 SDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW------------- 1053 (1193)
Q Consensus 987 ~e~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~l------------- 1053 (1193)
..++..++.++........+.+.....+.+...+++.+...+..+++..+.+..+++.+++++++++
T Consensus 872 ~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~ 951 (1930)
T KOG0161|consen 872 LEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELT 951 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333333333333333333333333334444444444444444444444433333333221
Q ss_pred -----------HHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHH
Q 001002 1054 -----------QKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDD 1122 (1193)
Q Consensus 1054 -----------q~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~ 1122 (1193)
...+..|+..+..++..+++..+++..++ .....++.+++..++++++|.+...++++.+++.
T Consensus 952 ~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lE------e~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~l 1025 (1930)
T KOG0161|consen 952 LQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELE------ERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDL 1025 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222222222211111010 0112344568889999999999999999999988
Q ss_pred HHHHHH-hh------------hcCCCCCCCcHHHHHH----------------------------HHHHHHHHHHHHHHH
Q 001002 1123 AKALIE-IK------------TTQPASTVHPDVELRK----------------------------LKMRFETWKKDYKTR 1161 (1193)
Q Consensus 1123 ~k~l~E-~k------------e~q~e~~~~~~~el~k----------------------------Lk~~lE~~kk~~e~r 1161 (1193)
+..+.+ .+ +|++...++++++++. +..++++.+++++++
T Consensus 1026 e~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~ 1105 (1930)
T KOG0161|consen 1026 EVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEAR 1105 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 777622 22 5666666666666555 445555666666666
Q ss_pred HHHHHHHHHhhcc
Q 001002 1162 LREAKVRLNKLGQ 1174 (1193)
Q Consensus 1162 L~elk~eL~~L~~ 1174 (1193)
|.++.++|+..++
T Consensus 1106 i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1106 IKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.7e-189 Score=1724.64 Aligned_cols=677 Identities=80% Similarity=1.222 Sum_probs=645.5
Q ss_pred cCCCCccCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCCCCchhhHHH
Q 001002 202 PANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIAD 281 (1193)
Q Consensus 202 ~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~ 281 (1193)
|+||+.++++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEE
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 361 (1193)
+||+.|..+++||||||||||||||||++|++|+||+.+++++ +|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 9999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHH
Q 001002 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1193)
Q Consensus 362 ~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1193)
+||.+|.|+||+|.+||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+.+|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCce
Q 001002 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1193)
Q Consensus 442 ~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~ 521 (1193)
.++.||+.|||+++++..||+|||||||||||+|...++++.+++.+.+.+..||.||||++++|.++||++++.++++.
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 319 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDN 319 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCce
Confidence 99999999999999999999999999999999999877777788888999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHH
Q 001002 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHF 601 (1193)
Q Consensus 522 i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f 601 (1193)
+.++++++||.++||+|||+||++||+|||.+||.+|.++...+..+||||||||||+|+.|||||||||||||+||++|
T Consensus 320 ~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 399 (677)
T cd01383 320 IVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHF 399 (677)
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999866556789999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCCCCc
Q 001002 602 NRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGRA 681 (1193)
Q Consensus 602 ~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~~~~ 681 (1193)
++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|.++++..
T Consensus 400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~ 479 (677)
T cd01383 400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGA 479 (677)
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHHHHhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHHH
Q 001002 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1193)
Q Consensus 682 F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 761 (1193)
|+|+||||+|+|+++||++||+|+++.+++++|++|++++..+|.+.+...+.......+.++...+..||+++|+.||+
T Consensus 480 F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 559 (677)
T cd01383 480 FTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKGQLF 559 (677)
T ss_pred eEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccccccccccccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765432221111111112234567899999999999
Q ss_pred HHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccCCChH
Q 001002 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL 841 (1193)
Q Consensus 762 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~ 841 (1193)
.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|++
T Consensus 560 ~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 639 (677)
T cd01383 560 KLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPL 639 (677)
T ss_pred HHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877777899
Q ss_pred HHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 842 SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 842 ~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
..|..||+.+++++.+|++|+||||||.++++.||..|
T Consensus 640 ~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 640 SVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999999999999999999999999876
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=7.1e-184 Score=1680.73 Aligned_cols=660 Identities=44% Similarity=0.740 Sum_probs=625.6
Q ss_pred CcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHHHH
Q 001002 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEM 287 (1193)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m 287 (1193)
|||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|+++.+..|+++.. .|||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998754 3899999999999999
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCC
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFG 367 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g 367 (1193)
+++++||||||||||||||||++|++|+||+.++++...|+++|+++||||||||||||++||||||||||++|+|+..|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 99999999999999999999999999999999998777899999999999999999999999999999999999999999
Q ss_pred ceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHH
Q 001002 368 KICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEAL 447 (1193)
Q Consensus 368 ~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al 447 (1193)
.|+||+|++||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|..++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHHhcCceeeeeCC--CcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEec
Q 001002 448 DIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKK 525 (1193)
Q Consensus 448 ~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 525 (1193)
+.|||+++++..||+|||||||||||+|...+. .+.+.+.+.+.++.||.||||++++|.++||++++.++++.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999997542 356889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhh
Q 001002 526 LTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHL 605 (1193)
Q Consensus 526 l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~ 605 (1193)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+||++|++|+
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986533456799999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC---CCce
Q 001002 606 FKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAF 682 (1193)
Q Consensus 606 f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~---~~~F 682 (1193)
|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|+|||.+|++||++++++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653 5799
Q ss_pred EEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHHH
Q 001002 683 SIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1193)
Q Consensus 683 ~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 761 (1193)
+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... .+...+..||+++|+.||+
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~----------~~~~~k~~tv~~~fk~qL~ 550 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMG----------AETRKKKPTLSSQFRRSLD 550 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhccccccc----------ccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999976 5776432110 0112346899999999999
Q ss_pred HHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccccc---CC
Q 001002 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL---SQ 838 (1193)
Q Consensus 762 ~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~---~~ 838 (1193)
.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++.... ..
T Consensus 551 ~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~ 630 (671)
T cd01381 551 LLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQD 630 (671)
T ss_pred HHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654 34
Q ss_pred ChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 839 DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 839 d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
|++..|..|++.+.+++..|++|+||||||.+++..||..|
T Consensus 631 ~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 631 CLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 77889999999998999999999999999999999999876
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.5e-183 Score=1683.11 Aligned_cols=669 Identities=49% Similarity=0.820 Sum_probs=624.6
Q ss_pred CcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHH
Q 001002 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1193)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1193)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++... |||||+||++||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654 799999999999999
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC------ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEE
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~------~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 361 (1193)
+.+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998753 4799999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHH
Q 001002 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1193)
Q Consensus 362 ~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1193)
+||.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+.+|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCce
Q 001002 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1193)
Q Consensus 442 ~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~ 521 (1193)
.++.||+.|||+++++..||+|||||||||||+|...+++......+.+.++.||.||||++++|.++|+++++.++++.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766554444456779999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC--CCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHH
Q 001002 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGK--QCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1193)
Q Consensus 522 i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~--~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~ 599 (1193)
+.+++|++||.++||+|||+||++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998752 3356799999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhC--CCCccccC
Q 001002 600 HFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGE 677 (1193)
Q Consensus 600 ~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f~~~ 677 (1193)
+||+|+|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||.+|++||.+|++||+++++ +|+.|.++
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 89999876
Q ss_pred C--CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCC------CCCCCCCCCCCcc
Q 001002 678 R--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPK------PAASSQPGALDTQ 748 (1193)
Q Consensus 678 ~--~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~------~~~~~~~~~~~~~ 748 (1193)
+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.. ++.+...++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 5 47899999999999999999999999999999999999999876 5786543221110 1111111222446
Q ss_pred ccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhh
Q 001002 749 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 828 (1193)
Q Consensus 749 ~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~ 828 (1193)
..||+++|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 829 VLLSEKQ-LSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 829 ~L~~~~~-~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
+|++... ...|++..|+.||+.+.+++..|++|+||||||.+++..||..|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999876 35688999999999998888999999999999999999999876
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.8e-183 Score=1681.88 Aligned_cols=672 Identities=47% Similarity=0.748 Sum_probs=626.3
Q ss_pred CCccCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHH
Q 001002 205 PDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADT 282 (1193)
Q Consensus 205 p~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~ 282 (1193)
||.++++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++++..|+++.. .|||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999998764 38999999999
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC----------ccHHHHHHhhhHHHHHhhcCcCCCCCCC
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----------EGIEYEILQTNHILEAFGNAKTSRNDNS 352 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~----------~~i~~~il~snpiLEAFGNAkT~~N~NS 352 (1193)
||+.|..+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999998642 3699999999999999999999999999
Q ss_pred CccccEEEEEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCC-CCCccccCCCcccc
Q 001002 353 SRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVA-NDYNYLNQSECLTI 431 (1193)
Q Consensus 353 SRfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~-~~y~yL~~~~~~~~ 431 (1193)
||||||++|+|+..|+|+||+|.+|||||||||.|++||||||||||||+|++++++++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999876 89999999876 47
Q ss_pred CCcchHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHh
Q 001002 432 DGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALS 511 (1193)
Q Consensus 432 ~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~ 511 (1193)
+++||+.+|..++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987667778899999999999999999999999999
Q ss_pred hceeccCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhh
Q 001002 512 THKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCIN 591 (1193)
Q Consensus 512 ~~~~~~~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcIN 591 (1193)
++++.++++.+.+++++++|.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34567999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhHHHHHHhhhcCcceeecccc-ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCC
Q 001002 592 YANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 670 (1193)
Q Consensus 592 yaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~-dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 670 (1193)
||||+||++|++|+|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||.+|++||.+|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CCcccc--C--CCCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCC
Q 001002 671 NSCFKG--E--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGAL 745 (1193)
Q Consensus 671 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~ 745 (1193)
|+.|.. + .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.. .........
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-~~~~~~~~~ 557 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDG-GGGGGKKKK 557 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhccccccc-ccccCCCCc
Confidence 998732 2 257899999999999999999999999999999999999999976 5776543211100 000011111
Q ss_pred CccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHH
Q 001002 746 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAG 825 (1193)
Q Consensus 746 ~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~ 825 (1193)
.++..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccc--CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 826 RYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 826 RY~~L~~~~~~--~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
||++|++.... ..|++..|+.||+.+++++..|++|+||||||.+++..||..|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999987642 4588999999999999999999999999999999999999876
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2e-182 Score=1665.97 Aligned_cols=659 Identities=48% Similarity=0.812 Sum_probs=620.4
Q ss_pred CCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCC-CCChHHHHHHhccCCC--CCchhhHHHHHHH
Q 001002 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1193)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1193)
+|||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++| +|+++++..|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999987654 8999999999999
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC----ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEE
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 361 (1193)
+|..+++||||||||||||||||++|++|+||+.++++. ..|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999998642 3699999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHH
Q 001002 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1193)
Q Consensus 362 ~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1193)
+|+.+|.|+||+|.+||||||||++|++||||||||||||+| +++++++|+|.++.+|+||++++|..++++||+++|.
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecC---hHHHHHHHHHcCCCHHHHHHhHhhceeccC
Q 001002 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA---DEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1193)
Q Consensus 442 ~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~---~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1193)
.++.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.++.||.||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 99999999999999999999999999999999999765444444443 589999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHH
Q 001002 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1193)
Q Consensus 519 ~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq 598 (1193)
++.+.++++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34579999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC
Q 001002 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1193)
Q Consensus 599 ~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~ 678 (1193)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|++|..++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHH
Q 001002 679 --GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1193)
Q Consensus 679 --~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 755 (1193)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... +...+..||+++
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~k~~tv~~~ 547 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-----------SKSSKFSSIGSR 547 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-----------ccccccccHHHH
Confidence 47999999999999999999999999999999999999999976 5776432111 112346899999
Q ss_pred HHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccc
Q 001002 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1193)
Q Consensus 756 fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~ 835 (1193)
|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++...
T Consensus 548 fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 627 (674)
T cd01384 548 FKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVL 627 (674)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c-CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhH
Q 001002 836 L-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQV 882 (1193)
Q Consensus 836 ~-~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~ 882 (1193)
. ..|.+..|+.||..+++ ..|++|+||||||.+++..||..|.+.
T Consensus 628 ~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 628 KGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 4 34788999999998766 579999999999999999999999764
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=7.6e-182 Score=1665.92 Aligned_cols=657 Identities=44% Similarity=0.733 Sum_probs=621.4
Q ss_pred CcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHHHH
Q 001002 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEM 287 (1193)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m 287 (1193)
|||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|+++++..|+++.. .|||||+||++||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998865 4899999999999999
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC---ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEc
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~---~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~ 364 (1193)
+.+++||||||||||||||||++|++|+||+.++++. ..++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998764 3599999999999999999999999999999999999999
Q ss_pred CCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHH
Q 001002 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLM 444 (1193)
Q Consensus 365 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~ 444 (1193)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|+.++++||+.+|..++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCC----c
Q 001002 445 EALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK----D 520 (1193)
Q Consensus 445 ~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~----e 520 (1193)
.||+.|||+++++..||+|||||||||||+|...+++ .+.+.+.+.++.||.||||++++|.++|+++++.+++ +
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 9999999999999999999999999999999975543 3678899999999999999999999999999999998 9
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHH
Q 001002 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 600 (1193)
Q Consensus 521 ~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~ 600 (1193)
.+.++++++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445577999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhc-CCCccccccccccCCC-CCChHHHHHHHHHHhCCCCccccC-
Q 001002 601 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP-KATDLTFANKLKQHLGSNSCFKGE- 677 (1193)
Q Consensus 601 f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~-~p~Gil~lLdee~~~p-~~td~~f~~kl~~~~~~~~~f~~~- 677 (1193)
||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++++++|++|..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999986654
Q ss_pred -CCCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHH
Q 001002 678 -RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1193)
Q Consensus 678 -~~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 755 (1193)
.+..|+|+||||+|+|+++||++||+|+++++++++|++|+++++ .+|.+.....+ ..+..||+++
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~------------~~~~~tv~~~ 547 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS------------KKRPTTAGFK 547 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc------------cCCCCcHHHH
Confidence 367999999999999999999999999999999999999999976 57764211100 1234799999
Q ss_pred HHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccc
Q 001002 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1193)
Q Consensus 756 fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~ 835 (1193)
|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++...
T Consensus 548 fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 627 (674)
T cd01378 548 IKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTW 627 (674)
T ss_pred HHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred c--CCChHHHHHHHHHHcCCCccccccCceeeeeecc-hhhhhhhhh
Q 001002 836 L--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRR 879 (1193)
Q Consensus 836 ~--~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g-~l~~LE~~R 879 (1193)
. ..|++..|+.||+.+++++..|++|+||||||.| ++..||.+|
T Consensus 628 ~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 628 PTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 2 4588999999999999999999999999999997 799999876
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.7e-181 Score=1661.12 Aligned_cols=668 Identities=41% Similarity=0.727 Sum_probs=618.5
Q ss_pred CCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHH
Q 001002 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNE 286 (1193)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~ 286 (1193)
+|||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+.+|+|+++.+..|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987644 89999999999999
Q ss_pred HhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC-CccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcC
Q 001002 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSA 365 (1193)
Q Consensus 287 m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~ 365 (1193)
|+.+++||||||||||||||||++|++|+||+.++++ +..|+++|+++||||||||||||++||||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 9999999999999999999999999999999998753 45799999999999999999999999999999999999995
Q ss_pred CCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHH
Q 001002 366 FGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLME 445 (1193)
Q Consensus 366 ~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~ 445 (1193)
+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+.+|..++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCC--CcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEE
Q 001002 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1193)
Q Consensus 446 Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~ 523 (1193)
||+.|||+++++..||+|||||||||||+|...+. .+.+.+.+++.++.||.||||++++|.++||++++.++++.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987542 2357788999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHH
Q 001002 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1193)
Q Consensus 524 ~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~ 603 (1193)
++++++||.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864 3457999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC--CCc
Q 001002 604 HLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER--GRA 681 (1193)
Q Consensus 604 ~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~--~~~ 681 (1193)
|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||.+|++||.+|++|++..+++|+.|.+++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred eEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHH
Q 001002 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1193)
Q Consensus 682 F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL 760 (1193)
|+|+||||+|+|+++|||+||+|.++++++++|++|++++++ +|.......+.++......++...+.+||+++|+.||
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL 557 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQSL 557 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999764 7754321111111000111112334589999999999
Q ss_pred HHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccCCCh
Q 001002 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 840 (1193)
Q Consensus 761 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~ 840 (1193)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++......++
T Consensus 558 ~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~ 637 (677)
T cd01387 558 LDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAP 637 (677)
T ss_pred HHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543344
Q ss_pred HHHH-HHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 841 LSIS-VAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 841 ~~~~-~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
...| ..+++.+++++..|++|+||||||.+++..||..|
T Consensus 638 ~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 638 GDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 4444 67888889999999999999999999999999876
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.5e-180 Score=1656.21 Aligned_cols=669 Identities=41% Similarity=0.679 Sum_probs=619.8
Q ss_pred cCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccC---CCCCchhhHHHHHH
Q 001002 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV---MDSPHVYAIADTAY 284 (1193)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~---~~~PHiyavA~~Ay 284 (1193)
..++|||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|+++++..|++.. ..|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999998865 23899999999999
Q ss_pred HHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC---CccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEE
Q 001002 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1193)
Q Consensus 285 ~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 361 (1193)
+.|..+++||||||||||||||||++|+||+||+.+++. ..+|+++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999999753 24799999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHH
Q 001002 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1193)
Q Consensus 362 ~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1193)
+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++++|.++.+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999888778999999999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeC---CCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccC
Q 001002 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVID---NENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1193)
Q Consensus 442 ~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~---~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1193)
.++.||+.|||+++++..||+|||||||||||+|...+ .++.+.+.+.+.+..||.||||++++|.++||++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 99999999999999999999999999999999998753 245678889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC--CccceeEEecccCcccCCC-CCHHHHHhhhhhH
Q 001002 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ--CTGRSINILDIYGFESFKK-NSFEQFCINYANE 595 (1193)
Q Consensus 519 ~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~--~~~~~IgILDi~GFE~f~~-NsfEQLcINyaNE 595 (1193)
++.++++++++||.++||+|||+||++||+|||.+||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999986532 2457999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccc
Q 001002 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 675 (1193)
Q Consensus 596 rLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~ 675 (1193)
+||++|++|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||.+|++|+++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC--CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccch
Q 001002 676 GER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1193)
Q Consensus 676 ~~~--~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv 752 (1193)
+++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|...........+ .++........||
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~--~~~~~~~~~~~tV 563 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAV--LRAAFRAMAAPSV 563 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccccc--ccccccCccCCcH
Confidence 763 57899999999999999999999999999999999999999976 577542211100000 0101112234799
Q ss_pred HHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccc
Q 001002 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1193)
Q Consensus 753 ~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~ 832 (1193)
+++|+.||++||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|+|
T Consensus 564 ~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 564 SAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhh
Q 001002 833 EKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1193)
Q Consensus 833 ~~~~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~ 880 (1193)
.... +..+.|..||..+++++..|++|+||||||.+++..||....
T Consensus 644 ~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 644 KGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred cccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 6532 345679999999999999999999999999999999998654
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=5e-180 Score=1656.94 Aligned_cols=664 Identities=39% Similarity=0.664 Sum_probs=617.5
Q ss_pred cCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCC-CCChHHHHHHhccCCC--CCchhhHHHHHH
Q 001002 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1193)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1193)
.++||||+.|++|||++|||+|+.||.+++||||+|++|||||||+++| +|+++++..|+++... |||||+||++||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 9999999999987654 799999999999
Q ss_pred HHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEc
Q 001002 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1193)
Q Consensus 285 ~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~ 364 (1193)
+.|..+++||||||||||||||||++|+||+||+.+++++..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred CCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCC-----------------
Q 001002 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE----------------- 427 (1193)
Q Consensus 365 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~----------------- 427 (1193)
..|+|+||+|.+||||||||+.|++||||||||||||+|+++++|+.|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------ccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCc-c--eeecChHHHHHH
Q 001002 428 ---------CLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN-H--VEVIADEAVTTA 495 (1193)
Q Consensus 428 ---------~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~-~--~~~~~~~~l~~a 495 (1193)
|..++++||+.+|..++.||++|||+++++..||+|||||||||||+|...++.+ . +...+.+.+..|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 2346789999999999999999999999999999999999999999999754332 2 334467899999
Q ss_pred HHHcCCCHHHHHHhHhhceec-----cCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeE
Q 001002 496 AMLMGCSSDELMLALSTHKIQ-----AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSIN 570 (1193)
Q Consensus 496 a~LLgv~~~~L~~~L~~~~~~-----~~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~Ig 570 (1193)
|.||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||.+||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999988 7789999999999999999999999999999999999999997643 457999
Q ss_pred EecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCcccccccccc
Q 001002 571 ILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEES 650 (1193)
Q Consensus 571 ILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~ 650 (1193)
||||||||+|+.|||||||||||||+||++|++++|..||++|.+|||+|++|+|.||++|||||+++|.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCCCccccCC------------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhcc
Q 001002 651 NFPKATDLTFANKLKQHLGSNSCFKGER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCT 718 (1193)
Q Consensus 651 ~~p~~td~~f~~kl~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~ 718 (1193)
.+|++||.+|++||++.+++|++|..++ +..|+|+||||+|+|+++|||+||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999998876442 2579999999999999999999999999999999999999
Q ss_pred HHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhh
Q 001002 719 CQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQ 797 (1193)
Q Consensus 719 ~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~Q 797 (1193)
++++ .+|..........+ .....+..||+++||.||+.||++|++|+||||||||||..+.|+.||..+|++|
T Consensus 561 n~~i~~lf~~~~~~~~~~~------~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~Q 634 (717)
T cd01382 561 DKFLRSLFESSTNNNDTKQ------KAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQ 634 (717)
T ss_pred hHHHHHHhccccccccccc------cccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHH
Confidence 9977 57865322111000 1112345799999999999999999999999999999999999999999999999
Q ss_pred hcccCcceeeeeeccCCccccchhhHHHhhhccccccccCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhh
Q 001002 798 FRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALED 877 (1193)
Q Consensus 798 Lr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~ 877 (1193)
|||+||||+|||+|.|||+|++|.+|++||++|++......|++..|++||+.+++++..|++|+||||||.|+++.||+
T Consensus 635 Lr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 635 LQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999998776667899999999999999999999999999999999999998
Q ss_pred hh
Q 001002 878 RR 879 (1193)
Q Consensus 878 ~R 879 (1193)
..
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 53
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=2.8e-177 Score=1632.93 Aligned_cols=665 Identities=54% Similarity=0.871 Sum_probs=629.8
Q ss_pred CCCccCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHH
Q 001002 204 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIAD 281 (1193)
Q Consensus 204 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~ 281 (1193)
||+..++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++++..|+++.. .|||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999998754 3899999999
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC---CccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccE
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~ 358 (1193)
+||+.|+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 999999999999999999999999999999999999999875 35799999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHH
Q 001002 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1193)
Q Consensus 359 i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1193)
++|+|+.+|.|+||+|.+||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcc-eeecChHHHHHHHHHcCCCHHHHHHhHhhceecc
Q 001002 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH-VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 517 (1193)
Q Consensus 439 ~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~-~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~ 517 (1193)
+|..++.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.||.||||++++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999997654432 3478899999999999999999999999999999
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHH
Q 001002 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1193)
Q Consensus 518 ~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErL 597 (1193)
+++.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998753 4567999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC
Q 001002 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 677 (1193)
Q Consensus 598 q~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~ 677 (1193)
|++|++++|..||++|.+|||+|+.|+|.||++||+||+++|.|||++|||||++|++||.+|++||++++++|++|..+
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C---CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchH
Q 001002 678 R---GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVG 753 (1193)
Q Consensus 678 ~---~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 753 (1193)
+ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... +...+..||+
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~~~~tv~ 548 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNA-----------GSKKRFRTVG 548 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccc-----------cccCCCCcHH
Confidence 3 57899999999999999999999999999999999999999976 5776432110 0123458999
Q ss_pred HHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccc
Q 001002 754 TKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 833 (1193)
Q Consensus 754 ~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~ 833 (1193)
++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||++||+|.|||+|++|.+|+.||++|++.
T Consensus 549 ~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 628 (677)
T smart00242 549 SQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPD 628 (677)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc--CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhh
Q 001002 834 KQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1193)
Q Consensus 834 ~~~--~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~ 880 (1193)
... ..|+++.|+.||..++++...|++|+||||||.+++..||..|+
T Consensus 629 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 629 TWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 654 23689999999999999999999999999999999999999874
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=5.3e-176 Score=1604.29 Aligned_cols=635 Identities=40% Similarity=0.673 Sum_probs=596.2
Q ss_pred CcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHHHH
Q 001002 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEM 287 (1193)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m 287 (1193)
++|||+.|++|||++|||+|+.||.+|+||||+|++|||||||+.+|+|+++++..|+++.. .|||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999987643 4899999999999999
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC-CccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCC
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~ 366 (1193)
...++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999998764 3479999999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhH-HhcCCCCCCCCccccCCCccccCCcc----hHHHHH
Q 001002 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK-ERLNLKVANDYNYLNQSECLTIDGVD----DAQNFH 441 (1193)
Q Consensus 367 g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 441 (1193)
|.|+||+|++||||||||++|++||||||||||||+|++++++ +.|+|.++..|+||++++|..+++++ |+.+|.
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999999999999999887676664 578999
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCC---CcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccC
Q 001002 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1193)
Q Consensus 442 ~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~---~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1193)
.++.||.+|||+++++..||+|||||||||||+|...+. .+.+.+.+.+.++.||.||||++++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 24577889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC----CccceeEEecccCcccCCCCCHHHHHhhhhh
Q 001002 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1193)
Q Consensus 519 ~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQLcINyaN 594 (1193)
++.+.++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987432 2356999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcc
Q 001002 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1193)
Q Consensus 595 ErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f 674 (1193)
||||++|++++|..||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||.+|++|++.++++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998864 455
Q ss_pred ccCC--CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHHHHhhcccCCCCCCCCCCCCCCCCCccccch
Q 001002 675 KGER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1193)
Q Consensus 675 ~~~~--~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv 752 (1193)
..++ ...|+|+||||+|+|+++||++||+|.++.+++++|++| +||
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S--------------------------------~tv 527 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS--------------------------------QTV 527 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC--------------------------------cHH
Confidence 5443 468999999999999999999999999999999999765 379
Q ss_pred HHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccc
Q 001002 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1193)
Q Consensus 753 ~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~ 832 (1193)
+++||.||++||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++
T Consensus 528 ~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~ 607 (653)
T cd01379 528 ASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAY 607 (653)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc-CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 833 EKQL-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 833 ~~~~-~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
.... ..+.+..|..||+.+++ ++|++|+||||||.+++..||.+|
T Consensus 608 ~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 608 RFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 6543 34678899999998776 479999999999999999999865
No 15
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-176 Score=1501.11 Aligned_cols=698 Identities=39% Similarity=0.662 Sum_probs=646.0
Q ss_pred cCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHH
Q 001002 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1193)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1193)
-.||+|++-|+.+++++++.||+.||..+.||||+|+|||+||||+.++||+++.|+.|++...- |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998754 8999999999999
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC-----ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEE
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 360 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~-----~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 360 (1193)
.|.+.++||||+|||||||||||++|+||+|+|++.+.+ ..+.+.+|+|||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999998753 256788999999999999999999999999999999
Q ss_pred EEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCC-CCCCCCccccCCCccccCCcchHHH
Q 001002 361 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQN 439 (1193)
Q Consensus 361 l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 439 (1193)
|.||-.|..+|+.|.+|||||||||.|.+||||||||||||.|+++.+...|+| +++..|+||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 689999999998 888999999999
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCC
Q 001002 440 FHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 519 (1193)
Q Consensus 440 f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~ 519 (1193)
|..+..||.++||+++|++++|+|+|||||||||.|...++ ..-+++...+..+|+||++++++|.++|++|++.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED--SSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc--ccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999996543 3334555889999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC----CccceeEEecccCcccCCCCCHHHHHhhhhhH
Q 001002 520 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYANE 595 (1193)
Q Consensus 520 e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQLcINyaNE 595 (1193)
|.+.+++|++||.++||||||++|+|||+|||.+||.++..... ....-||+|||||||+|+.||||||||||+||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987532 12368999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCC-CChHHHHHHHHHHhCCCCcc
Q 001002 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPK-ATDLTFANKLKQHLGSNSCF 674 (1193)
Q Consensus 596 rLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~-~td~~f~~kl~~~~~~~~~f 674 (1193)
+|||.|.+-+++.|||||..|||+|+.|+|.+|.-++||+|.+..|||+||||||..|+ .||.+|+++|.+++++|++|
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999886 58999999999999999999
Q ss_pred ccCC---------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCC
Q 001002 675 KGER---------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGA 744 (1193)
Q Consensus 675 ~~~~---------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~ 744 (1193)
.... -.+|.|.||||+|+|+|.||++||+|.|-.|+..+|..|++++. .+|.........
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~---------- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAE---------- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHh----------
Confidence 6421 26899999999999999999999999999999999999999876 577532111000
Q ss_pred CCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHH
Q 001002 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1193)
Q Consensus 745 ~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 824 (1193)
...+-.|++++|+.++..||..|.+-+|+||||||||+.+.|+.||...|.+|.+|+|+||-+|++|+||.+|.+|+.|+
T Consensus 554 ~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL 633 (1001)
T KOG0164|consen 554 VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFL 633 (1001)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHH
Confidence 01234799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccC---CChHHHHHHHHHHcCCCccccccCceeeeeec-chhhhhhhhhhhHHHH-HHHHHHHHhhhhHh
Q 001002 825 GRYGVLLSEKQLS---QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQA-IIRLQKCFRGYQAR 899 (1193)
Q Consensus 825 ~RY~~L~~~~~~~---~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~-g~l~~LE~~R~~~l~a-ai~IQ~~~Rg~laR 899 (1193)
.||+++++..++. .+.++.|..+++..++. .++.+|+||||+|. ..+..||..|..++.. ++.||+.||||++|
T Consensus 634 ~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R 712 (1001)
T KOG0164|consen 634 LRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLAR 712 (1001)
T ss_pred HHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988863 34577888889988886 89999999999997 4589999999888764 67899999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHH
Q 001002 900 SRFRELCNGVITLQSFARGEN 920 (1193)
Q Consensus 900 k~y~~~r~a~i~IQs~~Rg~~ 920 (1193)
.+|++|++++++|+ +||.+.
T Consensus 713 ~ry~rmka~~~ii~-wyR~~K 732 (1001)
T KOG0164|consen 713 QRYRRMKASATIIR-WYRRYK 732 (1001)
T ss_pred HHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999998 777444
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.8e-175 Score=1619.58 Aligned_cols=669 Identities=50% Similarity=0.813 Sum_probs=621.4
Q ss_pred CcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHH
Q 001002 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1193)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1193)
+++||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|+++++..|+++... |||||+||++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999987643 899999999999999
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC-CccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCC
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~ 366 (1193)
+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 4579999999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHH
Q 001002 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEA 446 (1193)
Q Consensus 367 g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~A 446 (1193)
|.|+||+|.+||||||||++|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|..++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcc--eeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEe
Q 001002 447 LDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH--VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAK 524 (1193)
Q Consensus 447 l~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~--~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~ 524 (1193)
|+.|||+++++..||+|||||||||||+|...++++. +.+.+.+.++.||.||||++++|.++|+++++.++++.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 9999999999999999999999999999997665443 77889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHh
Q 001002 525 KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRH 604 (1193)
Q Consensus 525 ~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~ 604 (1193)
++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKD-GRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999998752 34679999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC---CCCc
Q 001002 605 LFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE---RGRA 681 (1193)
Q Consensus 605 ~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~---~~~~ 681 (1193)
+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++++++|+.|..+ .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986432 3579
Q ss_pred eEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHHHHHHH
Q 001002 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1193)
Q Consensus 682 F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL 760 (1193)
|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+..+......+....+..||+++|+.||
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL 559 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSL 559 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 57765322211100000111112345689999999999
Q ss_pred HHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccCC-C
Q 001002 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQ-D 839 (1193)
Q Consensus 761 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~-d 839 (1193)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++...... .
T Consensus 560 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~ 639 (679)
T cd00124 560 DALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSL 639 (679)
T ss_pred HHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765432 2
Q ss_pred hHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 840 PLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 840 ~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
....|..++..+++++..|++|+||||||.+++..||..|
T Consensus 640 ~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 640 TKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2334899999999999999999999999999999999865
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.8e-174 Score=1605.59 Aligned_cols=666 Identities=29% Similarity=0.474 Sum_probs=593.2
Q ss_pred cCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHh
Q 001002 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMM 288 (1193)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 288 (1193)
||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|.
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987643 8999999999999999
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCc--cHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCC
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~--~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~ 366 (1193)
.+++||||||||||||||||++|+||+||+.++++.+ ...++|+++||||||||||||++||||||||||++|+|+..
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 9999999999999999999999999999999987532 23468999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCC-ccccCCcchHHHHHHHHH
Q 001002 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE-CLTIDGVDDAQNFHNLME 445 (1193)
Q Consensus 367 g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~l~~ 445 (1193)
|.|+||+|.+|||||||||.|++||||||||||||+|++++++++|+|.+..+|.++.... +...++++|+++|..++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755543333322 334567899999999999
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCce----
Q 001002 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS---- 521 (1193)
Q Consensus 446 Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~---- 521 (1193)
||++|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||++++|.++|+++++.++.+.
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 24467888999999999999999999999999887766432
Q ss_pred ---------EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCC------CCHH
Q 001002 522 ---------IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKK------NSFE 586 (1193)
Q Consensus 522 ---------i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~------NsfE 586 (1193)
+..++++++|.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 33467889999999999999999999999999999998753 3457999999999999974 8999
Q ss_pred HHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeeccc-cChHHHHHHHhcCC--------------CccccccccccC
Q 001002 587 QFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKP--------------LGVLSLLDEESN 651 (1193)
Q Consensus 587 QLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f-~dn~~~l~lie~~p--------------~Gil~lLdee~~ 651 (1193)
|||||||||+|||+||+++|+.||++|.+|||+|+.+.+ .||++||+||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999987655 69999999999865 599999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCccccC--------CCCceEEeecCcc--ccccccchhhhcCCcc-hHHHHHHHhhccHH
Q 001002 652 FPKATDLTFANKLKQHLGSNSCFKGE--------RGRAFSIRHYAGE--VPYDTNGFLEKNRDPL-QTDIIQLLSSCTCQ 720 (1193)
Q Consensus 652 ~p~~td~~f~~kl~~~~~~~~~f~~~--------~~~~F~I~HyaG~--V~Y~~~gfl~KN~D~l-~~~~~~ll~~s~~~ 720 (1193)
+|++||.+|++||++++++|+.|... ....|+|+||||+ |+|+++||++||||.+ +.+++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 99999999999999999988887541 2468999999995 9999999999999965 68999999999988
Q ss_pred HH-HHhhcccCCC------------CCCCC---C-C-CCC---CCCCccccchHHHHHHHHHHHHHHHhccCCeeeEecC
Q 001002 721 VL-QLFASKMLKP------------SPKPA---A-S-SQP---GALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIK 779 (1193)
Q Consensus 721 ~~-~lf~~~~~~~------------~~~~~---~-~-~~~---~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIk 779 (1193)
++ .+|....... +...+ . . .+. ++...+++||+++||.||+.||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 65 6885432110 00000 0 0 000 0112346799999999999999999999999999999
Q ss_pred CCCCCC----------------------CCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccccc-
Q 001002 780 PNSKQL----------------------PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL- 836 (1193)
Q Consensus 780 PN~~~~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~- 836 (1193)
||+.+. |+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|++...+
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999874 789999999999999999999999999999999999999999999876432
Q ss_pred ------CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhh
Q 001002 837 ------SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1193)
Q Consensus 837 ------~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R 879 (1193)
..|++..|..||..+++++.+|++|+||||||.+++..||..|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 3588999999999999999999999999999999999999876
No 18
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.9e-172 Score=1464.71 Aligned_cols=776 Identities=38% Similarity=0.616 Sum_probs=692.2
Q ss_pred CcEEEEEcCCCCEEEEEEEeecCCeEEEEec--CCcEEEEeCCCcccCCCCccCCcCccccCCCCCchhHHHHHHHHHhc
Q 001002 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSR 235 (1193)
Q Consensus 158 ~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~ 235 (1193)
+..||++|+.++|..|.|+.+..+..+++.- .|.+++-.-+|++++..+...+|||-|.|-||||+.+|||++.||.+
T Consensus 4 gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k 83 (1259)
T KOG0163|consen 4 GRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYK 83 (1259)
T ss_pred CceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhcc
Confidence 4589999999999999999999999998653 57888888899999988888899999999999999999999999999
Q ss_pred CCccccCCCceEecCCCCcCC-CCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH
Q 001002 236 DMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1193)
Q Consensus 236 ~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~ 312 (1193)
|.||||+.+||||||||..+| +|+++.+..|++++.. ||||||||+.|||.|..-+.+||||+||||||||||++|.
T Consensus 84 ~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~ 163 (1259)
T KOG0163|consen 84 DKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKA 163 (1259)
T ss_pred CchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHH
Confidence 999999999999999999999 9999999999999865 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccceeeeccCCCC
Q 001002 313 AMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGER 392 (1193)
Q Consensus 313 il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gEr 392 (1193)
+|+||+.--|+.+.|+.+|+.+||||||||||||+||+||||||||++|||+..|.++|+-|.+||||||||+.|+.|||
T Consensus 164 vLrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ER 243 (1259)
T KOG0163|consen 164 VLRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEER 243 (1259)
T ss_pred HHHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhccc
Confidence 99999988777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCcc---------------------------ccCCcchHHHHHHHHH
Q 001002 393 SYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECL---------------------------TIDGVDDAQNFHNLME 445 (1193)
Q Consensus 393 nfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~---------------------------~~~~~dD~~~f~~l~~ 445 (1193)
||||||||++|++++++++|.|..|++|+||+.| |. .-+-+||..+|..+..
T Consensus 244 NYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~ 322 (1259)
T KOG0163|consen 244 NYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEK 322 (1259)
T ss_pred chhHHHHHHcCCCHHHHHHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHH
Confidence 9999999999999999999999999999999854 31 1133699999999999
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCC--Ccceeec--ChHHHHHHHHHcCCCHHHHHHhHhhceecc----
Q 001002 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVI--ADEAVTTAAMLMGCSSDELMLALSTHKIQA---- 517 (1193)
Q Consensus 446 Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~--~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~---- 517 (1193)
||..+|++++|...||+++|||||||||+|+...+ .+.|.+. +...|..+|+|||+++++|...|+.|.|.+
T Consensus 323 Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG 402 (1259)
T KOG0163|consen 323 ALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGG 402 (1259)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999997543 3445554 456899999999999999999999999874
Q ss_pred -CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHH
Q 001002 518 -GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANER 596 (1193)
Q Consensus 518 -~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEr 596 (1193)
.|..|.+||.+.+|..+||||||++|++||||||.+||+++... .+..+||||||.|||.|.+||||||||||+||+
T Consensus 403 ~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe--~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEK 480 (1259)
T KOG0163|consen 403 FKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE--KSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEK 480 (1259)
T ss_pred ccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc--cccceeEEEeeccceeeecccHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999764 345799999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcccc
Q 001002 597 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKG 676 (1193)
Q Consensus 597 Lq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~ 676 (1193)
||+|||+.|++.||+.|..||+....|.|.||++||+|||.|..|||.|||||..+|+.|+..|....+..+++|-....
T Consensus 481 LQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~ 560 (1259)
T KOG0163|consen 481 LQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDL 560 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776644433
Q ss_pred CC------------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCC
Q 001002 677 ER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPG 743 (1193)
Q Consensus 677 ~~------------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~ 743 (1193)
|| ...|.|+||||.|.|++..|++||.|.|+..+-.|+..|+++++ .||.+..... .++ .+
T Consensus 561 PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~-a~~-----~~ 634 (1259)
T KOG0163|consen 561 PRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTS-AKQ-----TR 634 (1259)
T ss_pred CchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCc-ccc-----cc
Confidence 32 46899999999999999999999999999999999999999865 6897532111 111 11
Q ss_pred CCCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhH
Q 001002 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1193)
Q Consensus 744 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 823 (1193)
...+.-||+++|+.||..||+.|++|..|||||||||....|..||...++.||+|+|+..+++++..|||.|..|.+.
T Consensus 635 -gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 635 -GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred -ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 1345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccccCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHHHHHHHHHHhhhhHhHHhh
Q 001002 824 AGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFR 903 (1193)
Q Consensus 824 ~~RY~~L~~~~~~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~aai~IQ~~~Rg~laRk~y~ 903 (1193)
+.-|.-.+|+....-||+-.|.++.+.++++..+|++|.|||||+.|.++......+.--...+.|-+..--|+.|.+|+
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999888999999999999999999999999999999999999888877655555555555666777777776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 904 ELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 904 ~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
+..-++..+ ...++-- .-...+++++|+..|||++|++++
T Consensus 794 k~q~~a~sV-------IKLkNkI--------------~yRae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 794 KSQYGALSV-------IKLKNKI--------------IYRAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred Hhhhhhhhe-------eehhhHH--------------HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 653221110 0000000 011246677777788887777776
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.5e-173 Score=1471.87 Aligned_cols=707 Identities=39% Similarity=0.661 Sum_probs=656.9
Q ss_pred CccCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHH
Q 001002 206 DILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTA 283 (1193)
Q Consensus 206 ~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~A 283 (1193)
-...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+|+|+++.+..|+++.. .||||||+|+++
T Consensus 15 ~k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 15 KKHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred ceeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 345789999999999999999999999999999999999999999999999999999999998865 489999999999
Q ss_pred HHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC---ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEE
Q 001002 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 360 (1193)
Q Consensus 284 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~---~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 360 (1193)
|++|..+.+|||||||||||||||+++|.||+|++.++++. +.|.+-||++||+|||||||||+||+||||||||++
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~E 174 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLE 174 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEE
Confidence 99999999999999999999999999999999999998764 357788999999999999999999999999999999
Q ss_pred EEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHH
Q 001002 361 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNF 440 (1193)
Q Consensus 361 l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f 440 (1193)
|+|+..|..+|++|..|||||||||.|.+|||||||||||+.||+.+.|..||+..++.|.||+.++|+.++++||..+|
T Consensus 175 i~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdf 254 (1106)
T KOG0162|consen 175 IQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDF 254 (1106)
T ss_pred EEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceecc---
Q 001002 441 HNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA--- 517 (1193)
Q Consensus 441 ~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~--- 517 (1193)
+.++.||+++|+.+++|+.||++||+|||||||.|.+ .++.+.+.+.+.++-.|.||||+...|.+.||.|.|..
T Consensus 255 q~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~E--e~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G 332 (1106)
T KOG0162|consen 255 QETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIE--EGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWG 332 (1106)
T ss_pred HHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEe--eCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999997 34567788889999999999999999999999999875
Q ss_pred -CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHH
Q 001002 518 -GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANER 596 (1193)
Q Consensus 518 -~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEr 596 (1193)
..+.+..+|+++||...||||||+||.+||||||++||.+|...+.+...+||||||||||+|++||||||||||.||+
T Consensus 333 ~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEK 412 (1106)
T KOG0162|consen 333 GKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEK 412 (1106)
T ss_pred ccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999986555566799999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhc-CCCccccccccccCCC----CCChHHHHHHHHHHhCCC
Q 001002 597 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP----KATDLTFANKLKQHLGSN 671 (1193)
Q Consensus 597 Lq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~-~p~Gil~lLdee~~~p----~~td~~f~~kl~~~~~~~ 671 (1193)
|||.|.+-+++.|||+|.+|||.|++|.|.||.-++||||. .|.||+++|||-|... .|.|.+|+.+|...+++|
T Consensus 413 LQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~ 492 (1106)
T KOG0162|consen 413 LQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSH 492 (1106)
T ss_pred HHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999994 6999999999999753 467999999999999999
Q ss_pred CccccCCCCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHHH-HhhcccCCCCCCCCCCCCCCCCCcccc
Q 001002 672 SCFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQ-LFASKMLKPSPKPAASSQPGALDTQKQ 750 (1193)
Q Consensus 672 ~~f~~~~~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1193)
|+|.. +...|+|+||||+|+||++||.+||||.|..|++.|+++|.++|.+ +|.......+ ..+-+
T Consensus 493 phF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds------------krRP~ 559 (1106)
T KOG0162|consen 493 PHFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS------------KRRPP 559 (1106)
T ss_pred Ccccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc------------cCCCC
Confidence 99975 3689999999999999999999999999999999999999999875 7754432222 11236
Q ss_pred chHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcc
Q 001002 751 SVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVL 830 (1193)
Q Consensus 751 tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L 830 (1193)
|.+.+.+.|-++|+++|..|+||||||||||..|.|+.||...|++|+.|+|+-|-|||+|+||.+|..|+.|+.||.+|
T Consensus 560 Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyail 639 (1106)
T KOG0162|consen 560 TAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAIL 639 (1106)
T ss_pred CchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheec
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC--ChHHHHHHHHHHcCCCccccccCceeeeeec-chhhhhhhhhhhHHHH-HHHHHHHHhhhhHhHHhhhhh
Q 001002 831 LSEKQLSQ--DPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELC 906 (1193)
Q Consensus 831 ~~~~~~~~--d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~-g~l~~LE~~R~~~l~a-ai~IQ~~~Rg~laRk~y~~~r 906 (1193)
.|..++.. |.+.+|..||+..++++++||+|.|+||++. ..+..||.+|++.... |.+||++||.|++|++|.+||
T Consensus 640 sp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 640 SPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred CcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988753 8899999999999999999999999999997 5689999999999875 789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 001002 907 NGVITLQSFARGENTRRRHASLGK 930 (1193)
Q Consensus 907 ~a~i~IQs~~Rg~~aRr~~~~~r~ 930 (1193)
.-+..| .-|...||+|--.|.
T Consensus 720 ee~t~l---l~gKKeRRr~Si~R~ 740 (1106)
T KOG0162|consen 720 EEATKL---LLGKKERRRYSINRN 740 (1106)
T ss_pred HHHHHH---hcchHHHHHHHHHHH
Confidence 644432 336667777666554
No 20
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.9e-169 Score=1531.21 Aligned_cols=743 Identities=51% Similarity=0.842 Sum_probs=692.8
Q ss_pred CCCCccCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCC-CCChHHHHHHh-ccCCCCCchhhHH
Q 001002 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYR-QKVMDSPHVYAIA 280 (1193)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~-~~~~~~PHiyavA 280 (1193)
.||+. .++|||+.|+|||||+|||||+.||..+.||||.|.+|||||||+.+| +|+++.|..|+ ......||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 45666 899999999999999999999999999999999999999999999999 99999999999 2223369999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC--CccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccE
Q 001002 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1193)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~--~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~ 358 (1193)
+.||+.|..+..||+||||||||||||+++|++|+||++++++ ..+||++|+.+|||+||||||||++||||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999998 67899999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHH
Q 001002 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1193)
Q Consensus 359 i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1193)
++|+|+..|+|.||+|.|||||||||+.++++|||||||||+|+|++ +++++|.|..+..|.|++|++|..++++||+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccC
Q 001002 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1193)
Q Consensus 439 ~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1193)
+|..++.||..+||+.++|+.||++||||||||||+|...++++.....++ .+..+|.||||+.+.|...|+.|.+.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999998766655444444 8999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHH
Q 001002 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1193)
Q Consensus 519 ~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq 598 (1193)
++.|+++++..+|...||++||.||++||+|+|..||.+|..++..+..+||||||||||.|..|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999876666789999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC
Q 001002 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1193)
Q Consensus 599 ~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~ 678 (1193)
|+||+|+|+.||++|..|||+|..|+|.||++|+++|++ |.|+++||||||++|.++|.+|..||.+++.+|++|.+++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr 478 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPR 478 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCC
Confidence 999999999999999999999999999999999999998 8999999999999999999999999999999999999986
Q ss_pred C--CceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHHHHhhcccCCCCCCCCCCCCCCCCCccccchHHHH
Q 001002 679 G--RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKF 756 (1193)
Q Consensus 679 ~--~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f 756 (1193)
. ..|+|.||||+|+|++.|||+||||+++++.++++..|++.+...+.+.....+. +.+++.||+++|
T Consensus 479 ~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~----------~~~~~~tv~s~f 548 (862)
T KOG0160|consen 479 LSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSS----------AKSKRSTVGSQF 548 (862)
T ss_pred CCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchh----------hhhhcccHHHHH
Confidence 4 5899999999999999999999999999999999999999987655443222111 256789999999
Q ss_pred HHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccccc
Q 001002 757 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1193)
Q Consensus 757 k~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~ 836 (1193)
+.+|..||.+|++|.||||||||||..+.|..||..+|++|||||||||++||+.+|||.|.+|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHH-HHHHHHHHhhhhHhHHhhhhhhHHHHHHHH
Q 001002 837 SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCNGVITLQSF 915 (1193)
Q Consensus 837 ~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~a-ai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~ 915 (1193)
..|++..|..+|+.++++ .||+|+||||++.|+++.|+.+|...+.+ ++.||+.+|+|+.|++|..+|++++.||+.
T Consensus 628 ~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~ 705 (862)
T KOG0160|consen 628 ASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAY 705 (862)
T ss_pred cccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667899999999998887 99999999999999999999999998875 567999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhHhhcchHHHH
Q 001002 916 ARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK-MHKLKQSNPVNAKV 978 (1193)
Q Consensus 916 ~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~-l~~~~~~~q~~lr~ 978 (1193)
+||+++|+ ..++ ..|++.||+.||+++.|+.|. ........|...+.
T Consensus 706 ~rG~~~r~--~~~~--------------~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~ 753 (862)
T KOG0160|consen 706 SRGVLARR--ETER--------------EAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRA 753 (862)
T ss_pred hhHHHHHH--hhHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 3333 257888888888888888888 44444444544444
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=3e-169 Score=1582.13 Aligned_cols=658 Identities=50% Similarity=0.834 Sum_probs=580.4
Q ss_pred cCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHHHHh
Q 001002 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMM 288 (1193)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m~ 288 (1193)
||||+.|++|||++|||+|+.||.+|.||||+|++|||||||+++|+|+++++..|+++.. .|||||++|++||+.|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 7999999999999999999999999999999999999999999999999999999998743 48999999999999999
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCc-----cHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEE
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE-----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHF 363 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~-----~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f 363 (1193)
++++||||||||||||||||++|+||+||+.++.+.. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 9999999999999999999999999999999987653 79999999999999999999999999999999999999
Q ss_pred cCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHH
Q 001002 364 SAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNL 443 (1193)
Q Consensus 364 ~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l 443 (1193)
+.+|.++||+|.+||||||||+.+++||||||||||||+|++++++++|+|.++.+|+||++++|..+++.||+.+|..+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEE
Q 001002 444 MEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1193)
Q Consensus 444 ~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~ 523 (1193)
+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.++++.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999998877778899999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHH
Q 001002 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1193)
Q Consensus 524 ~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~ 603 (1193)
++++++||.++||+|||+||++||+|||.+||.+|++.......+||||||||||+|..||||||||||||||||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999986645678999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCcceeeccc-cChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccC----
Q 001002 604 HLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGE---- 677 (1193)
Q Consensus 604 ~~f~~eq~eY~~EgI~~~~i~f-~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~~---- 677 (1193)
++|..||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|++||.+|+++|.+.+ ++|+.|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999 888998765
Q ss_pred --CCCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCC----------CCCCCCCCCCC
Q 001002 678 --RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPS----------PKPAASSQPGA 744 (1193)
Q Consensus 678 --~~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~----------~~~~~~~~~~~ 744 (1193)
....|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|........ .....+....+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 367999999999999999999999999999999999999999876 68876542100 00000011122
Q ss_pred CCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHH
Q 001002 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1193)
Q Consensus 745 ~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 824 (1193)
...+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||+|+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 24455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccccccc-----CCChHHHHHHHHHHcCCCccccccCceeeeee
Q 001002 825 GRYGVLLSEKQL-----SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLR 868 (1193)
Q Consensus 825 ~RY~~L~~~~~~-----~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr 868 (1193)
+||++|++.... ..++++.|+.||+.++++...|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 35899999999999999999999999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=7.9e-113 Score=1060.77 Aligned_cols=745 Identities=37% Similarity=0.536 Sum_probs=634.5
Q ss_pred CCCCccCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCC-CCChHHHHHHhccCC--CCCchhhH
Q 001002 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVM--DSPHVYAI 279 (1193)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~--~~PHiyav 279 (1193)
..+....+++||++|.+++|+.+++||..||..+.||||+|.+|++||||+.+| +|.++++..|.++.. .+||||++
T Consensus 55 ~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ 134 (1062)
T KOG4229|consen 55 LHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAI 134 (1062)
T ss_pred ccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhh
Confidence 445567899999999999999999999999999999999999999999999999 999999999985543 47999999
Q ss_pred HHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhc-CCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccE
Q 001002 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG-GGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1193)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~-~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~ 358 (1193)
|+.||+.|++...||||+|||||||||||+|+++++||+.++ +....++..|+.+||+|||||||+|.+||||||||||
T Consensus 135 ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~ 214 (1062)
T KOG4229|consen 135 ADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY 214 (1062)
T ss_pred hhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence 999999999999999999999999999999999999999999 7677899999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCcccc-CCcchH
Q 001002 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTI-DGVDDA 437 (1193)
Q Consensus 359 i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~-~~~dD~ 437 (1193)
|.++|..+|.|.||+|..||||||||+.|+.|||||||||++++|++..++..+.|..+.+|.||+++.+..+ ++.++.
T Consensus 215 i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~ 294 (1062)
T KOG4229|consen 215 IKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDV 294 (1062)
T ss_pred EEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCC--CcceeecChHHHHHHHHHcCCCHHHHHHhHhhcee
Q 001002 438 QNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 515 (1193)
Q Consensus 438 ~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~ 515 (1193)
..|..+..||..+||+.+++..||+++|||||+|||+|..... .+.+.+.+...++.+|.||+++.+.|..++|.++.
T Consensus 295 ~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~ 374 (1062)
T KOG4229|consen 295 AQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVN 374 (1062)
T ss_pred HhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccce
Confidence 9999999999999999999999999999999999999985433 34567889999999999999999999999999999
Q ss_pred ccCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-ccceeEEecccCcccCCCCCHHHHHhhhhh
Q 001002 516 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQC-TGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1193)
Q Consensus 516 ~~~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~-~~~~IgILDi~GFE~f~~NsfEQLcINyaN 594 (1193)
...++.+..++++++|.+.||++||+||++||.|||.+||..+.+.... ...+||||||||||+|..|+||||||||||
T Consensus 375 ~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~An 454 (1062)
T KOG4229|consen 375 VTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLAN 454 (1062)
T ss_pred eeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864321 357999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcc
Q 001002 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1193)
Q Consensus 595 ErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f 674 (1193)
|+||.+|++|||..||+||..|+|+|..|.|.||..|+++|..+|+|||.+||||+.||++||.+++.|+...++.+..|
T Consensus 455 e~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y 534 (1062)
T KOG4229|consen 455 EQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLY 534 (1062)
T ss_pred HHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred ccC---CCCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHHHHh-hcccCCCCC----------CC---C
Q 001002 675 KGE---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLF-ASKMLKPSP----------KP---A 737 (1193)
Q Consensus 675 ~~~---~~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~~lf-~~~~~~~~~----------~~---~ 737 (1193)
..+ ....|+|.||||.|.|++.||++||+|.++.|++.++.+|.+.+...+ .......+. .+ .
T Consensus 535 ~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~ 614 (1062)
T KOG4229|consen 535 VFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLE 614 (1062)
T ss_pred ccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccch
Confidence 433 257999999999999999999999999999999999999887765433 222111110 00 0
Q ss_pred CC-----CCCCCCCc----------cccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchh-hHhhhhccc
Q 001002 738 AS-----SQPGALDT----------QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEED-LVLQQFRCC 801 (1193)
Q Consensus 738 ~~-----~~~~~~~~----------~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~ 801 (1193)
++ .+.+..++ ...+++.+++-++......|.+..+||.|||++|+.-.+..++.. .+..++...
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~ 694 (1062)
T KOG4229|consen 615 VTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSR 694 (1062)
T ss_pred hhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhc
Confidence 00 00111111 234667777778889999999999999999999999988888877 899999999
Q ss_pred CcceeeeeeccCCccccchhhHHHhhhccccccccCCChH-HHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhh
Q 001002 802 GVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL-SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1193)
Q Consensus 802 gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~-~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~ 880 (1193)
|...+....+.|+..++.|++++++++..........+.. ..|..++.. ...+++..+.+.++.+...-..+.-.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 695 GSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEK--NAINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred ccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhh--ccccchhhhhcccccccCccccCCcccc
Confidence 9999999999999999999999988876544332211211 233344443 3346788999998876544333333333
Q ss_pred hHHHHHHHHHHHHhhhhHhHHhhhhh----hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001002 881 QVLQAIIRLQKCFRGYQARSRFRELC----NGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRG 956 (1193)
Q Consensus 881 ~~l~aai~IQ~~~Rg~laRk~y~~~r----~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~ 956 (1193)
......+..|..++.|..+..+...+ ...+.+|+-++....+..+...-.. .-.+++.+|..|=+
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~v~~~~~~t~ 841 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLR-----------FPDNVVLRQVSYTG 841 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccC-----------CChHHHHHhhhchh
Confidence 33444566777777777777765553 4677888888877777765443321 12345556666655
Q ss_pred HHHH
Q 001002 957 WLVR 960 (1193)
Q Consensus 957 ~laR 960 (1193)
...+
T Consensus 842 ~~~~ 845 (1062)
T KOG4229|consen 842 ELDQ 845 (1062)
T ss_pred hhcc
Confidence 3333
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.28 E-value=6.8e-11 Score=157.07 Aligned_cols=700 Identities=15% Similarity=0.132 Sum_probs=324.7
Q ss_pred eeecccceeeeccCCCCcchhHHHHhcCCChHh----HHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHHhhhc
Q 001002 376 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFL----KERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVL 451 (1193)
Q Consensus 376 ~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~----~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg 451 (1193)
.+..-.+..+.++++..+||-|+.+.-+.++.. .+.|.| ..++.+.|. ++..+..-|-.+..+.
T Consensus 219 vLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~Er~yhiFyqlls~~---- 286 (1930)
T KOG0161|consen 219 VLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PGERNYHIFYQLLSGA---- 286 (1930)
T ss_pred hHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cchhHHHHHHHHHhCC----
Confidence 344457888889999999999999998865532 222322 122333333 2333333344433322
Q ss_pred CChhhHHHHH--HHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhh--ceeccCCceEEecCC
Q 001002 452 IRKEDREQTF--AMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALST--HKIQAGKDSIAKKLT 527 (1193)
Q Consensus 452 ~~~~e~~~i~--~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~--~~~~~~~e~i~~~l~ 527 (1193)
.+..+...+ .-+.--.+++|..+ ..++-+ .......+..|-..||+++++...++.- -.+..|+-.+...-.
T Consensus 287 -~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~d--d~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~ 362 (1930)
T KOG0161|consen 287 -DPELKEELLLSDNVKDYKFLSNGES-TIPGVD--DAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPR 362 (1930)
T ss_pred -CHHHHHHHhhcccchhhhhhccccC-CCCCcc--hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhcccc
Confidence 221111110 00111112222222 111100 0011234667788999999988877532 223344433332223
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHH
Q 001002 528 LQQAIDSRDALAKFI-----YGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFN 602 (1193)
Q Consensus 528 ~~qA~~~rdalak~L-----Y~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~ 602 (1193)
.+||.-.....|-.+ |...+-| +..+.+ .....+-.++.|+.. +| .+++=+-|...-+
T Consensus 363 ~~qa~~~~~~~a~ka~~llg~~~~~~~-----~al~~p----riKvg~e~v~k~q~~------~q--~~~~v~alAk~lY 425 (1930)
T KOG0161|consen 363 EEQAEFDNTEVADKACHLLGINVEEFL-----KALLRP----RIKVGREWVSKAQNV------EQ--VLFAVEALAKALY 425 (1930)
T ss_pred ccccCCCCchHHHHHHHHcCCCHHHHH-----HHhccc----ceeccchhhhhcchH------HH--HHHHHHHHHHHHH
Confidence 444432222222211 1222222 222222 112334455555543 34 6777777777777
Q ss_pred HhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHH----H-HHHHHHHhCCCCccccC
Q 001002 603 RHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLT----F-ANKLKQHLGSNSCFKGE 677 (1193)
Q Consensus 603 ~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~----f-~~kl~~~~~~~~~f~~~ 677 (1193)
..+| .....+...+++|. .+-..+|.+++-...=||.. .|=+- | .+||++.|+.| -|...
T Consensus 426 erlF-~wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkLQqfFnh~-mFvlE 490 (1930)
T KOG0161|consen 426 ERLF-GWLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKLQQFFNHH-MFVLE 490 (1930)
T ss_pred HHHH-HHHHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHHHhhhcch-hhhhh
Confidence 7777 45667888888887 34444455544321112211 11111 1 25666666533 33322
Q ss_pred C------CCceEEeecCccccccccchhhhcCCcchHHHHHHHh-------hccHHHH-HHhhcccCCCCCCCCCCCCCC
Q 001002 678 R------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLS-------SCTCQVL-QLFASKMLKPSPKPAASSQPG 743 (1193)
Q Consensus 678 ~------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~-------~s~~~~~-~lf~~~~~~~~~~~~~~~~~~ 743 (1193)
. +-+|..-|| |.=.=.+.+-|+|=. .++.+|. +|+..|+ .++....+..+
T Consensus 491 qeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~---------- 554 (1930)
T KOG0161|consen 491 QEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLDEECVVPKATDKTFLEKLCDQHLGKHP---------- 554 (1930)
T ss_pred HHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHHHHHhcCCCccchHHHHHHHHhhccCc----------
Confidence 1 356777787 221112223333311 3444443 1222222 33332211110
Q ss_pred CCCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhH
Q 001002 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1193)
Q Consensus 744 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 823 (1193)
..+++. ..+....+....-+.+ |+|.-++-..++..-....|+.+|+|++ .+.|.....| +..+..+
T Consensus 555 --~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~ 621 (1930)
T KOG0161|consen 555 --KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAA 621 (1930)
T ss_pred --cccCcc-----cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchh
Confidence 001111 1223334444444555 9999999888888888899999999999 8887766555 6677777
Q ss_pred HHhhhccccccccCCChHHHHH-------HHHHHcC----------CCccccccC---ceeee--------------eec
Q 001002 824 AGRYGVLLSEKQLSQDPLSISV-------AVLQQFN----------VLPEMYQVG---YTKLY--------------LRS 869 (1193)
Q Consensus 824 ~~RY~~L~~~~~~~~d~~~~~~-------~iL~~~~----------i~~~~yqiG---kTKVF--------------lr~ 869 (1193)
..++.. ...... ..-+..|. .++..+. ||...-.-| ...|. .|.
T Consensus 622 ~~~~~~-~~~~K~-g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~ 699 (1930)
T KOG0161|consen 622 AKGGEA-LKKTKK-GSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQ 699 (1930)
T ss_pred hhhhhh-hcccCC-cchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHh
Confidence 776655 211111 11111111 1222111 121111111 01111 111
Q ss_pred chhhhhh----hhhhhHH-------------HHHHHH--------------------HHHHhhhhHhHHhhhhhhHHHHH
Q 001002 870 GQLAALE----DRRKQVL-------------QAIIRL--------------------QKCFRGYQARSRFRELCNGVITL 912 (1193)
Q Consensus 870 g~l~~LE----~~R~~~l-------------~aai~I--------------------Q~~~Rg~laRk~y~~~r~a~i~I 912 (1193)
|...++- .+|...+ .+...| .+-.-+.+.-.+-..+..-++.+
T Consensus 700 GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~f 779 (1930)
T KOG0161|consen 700 GFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLF 779 (1930)
T ss_pred hCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 1111100 011111 11111222222223333567888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--HhhcchHHHHHHHhcccccccc
Q 001002 913 QSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLKMHKL--KQSNPVNAKVKRRSGRKSSDMK 990 (1193)
Q Consensus 913 Qs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~l~~~--~~~~q~~lr~~~ke~k~l~e~~ 990 (1193)
|+.+|||++|+.|...... ..|+.+||..+|.|+..|.|.+-+. +.++...+.....+.+...+++
T Consensus 780 QA~~Rg~l~r~~~~kr~~~------------~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~ 847 (1930)
T KOG0161|consen 780 QAAIRGYLARKEFKKRLQQ------------LDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEI 847 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHH
Confidence 9999999999999887764 6788999999999988888872222 2222222222222222222222
Q ss_pred c--------------CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001002 991 D--------------VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE----- 1051 (1193)
Q Consensus 991 ~--------------~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee----- 1051 (1193)
. .++.....+..++..|+.++........+.++....+..+.++++....+++.++...++
T Consensus 848 ~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~l 927 (1930)
T KOG0161|consen 848 QKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAEL 927 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222233333344444444433322223333444444444444444444444433333322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHH
Q 001002 1052 -----MWQKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKAL 1126 (1193)
Q Consensus 1052 -----~lq~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l 1126 (1193)
+.++.+.+++..+++++..+.+...+...++.++.++.. ++...++.++.|.++...+++...+....+
T Consensus 928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~------e~~~~~e~~~kL~kekk~lEe~~~~l~~~l 1001 (1930)
T KOG0161|consen 928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEE------EINSLDENISKLSKEKKELEERIRELQDDL 1001 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224556666666777777666666555555555554332 233333333433333333333222221111
Q ss_pred ----------HHhh---hcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1127 ----------IEIK---TTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1127 ----------~E~k---e~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
.+.+ +.+++......+..++.++++|+.+++++.++..+++.+..+
T Consensus 1002 ~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~ 1060 (1930)
T KOG0161|consen 1002 QAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEEL 1060 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1111 445555555666666677778888888877776666666544
No 24
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.69 E-value=1.6e-08 Score=107.96 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhhhHHHHHhh-cCcCCCCCCCCc
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG-NAKTSRNDNSSR 354 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~snpiLEAFG-NAkT~~N~NSSR 354 (1193)
||+.+..++..|+ ++.|+||+..|+||||||+|+.--. .-.|--...-+.+++.....+++. +|.|.+|++|||
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSR 82 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSR 82 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHHHHHHHhhccccccccccCCCCccCc
Confidence 8888889999998 4699999999999999998864211 000000012223677888888999 999999999999
Q ss_pred cccEEEEEEcCCCce
Q 001002 355 FGKLIEIHFSAFGKI 369 (1193)
Q Consensus 355 fGk~i~l~f~~~g~i 369 (1193)
+..++.|++......
T Consensus 83 sH~i~~i~v~~~~~~ 97 (186)
T cd01363 83 SHSVFRIHFGGKNAL 97 (186)
T ss_pred ccEEEEEEEEEeecC
Confidence 999999999754443
No 25
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.13 E-value=6.8e-06 Score=65.95 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCCEEEEEEEeecCCeEEEEecCCcEEEEeCCC
Q 001002 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGE 199 (1193)
Q Consensus 158 ~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~ 199 (1193)
|..||||+++++|..|.|++..|+.++|.+.+|++++|+.+|
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 468999999999999999999999999999999999998764
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.00 E-value=9e-05 Score=93.44 Aligned_cols=88 Identities=25% Similarity=0.259 Sum_probs=71.0
Q ss_pred ccCceeeeeecchhhhhhhhhhh-HHHHHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 001002 859 QVGYTKLYLRSGQLAALEDRRKQ-VLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVP 937 (1193)
Q Consensus 859 qiGkTKVFlr~g~l~~LE~~R~~-~l~aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ 937 (1193)
.++..+++++.....++-+..-. ..++++.||+.+||+++|+... ...|++.||+.||++..|+.|...+
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~-------- 741 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALI-------- 741 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHH--------
Confidence 34556666777777776665533 3357789999999999999444 6689999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 938 EIRDEQLREIICLQSAIRGWLVRKQ 962 (1193)
Q Consensus 938 ~~~~~~~~aai~IQs~~R~~laRr~ 962 (1193)
.+++.||+.+|++++|.+
T Consensus 742 -------~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 742 -------PASITIQSGVRAMLARNE 759 (862)
T ss_pred -------HHHHHHHHHHHHHHhccc
Confidence 578999999999999983
No 27
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.48 E-value=3.4e-05 Score=99.43 Aligned_cols=191 Identities=19% Similarity=0.161 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccc
Q 001002 755 KFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK 834 (1193)
Q Consensus 755 ~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~ 834 (1193)
++.....+++..+....|.|++||+-|..+....|+...|..|+++.|+++..++++.+|+..+++.+|..-+.++.+..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 55566778999999999999999999988888899999999999999999999999999999999999999999988732
Q ss_pred ccCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhh-hHHH-HHHHHHHHHhhhhHhHHhhhhhhHHHHH
Q 001002 835 QLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK-QVLQ-AIIRLQKCFRGYQARSRFRELCNGVITL 912 (1193)
Q Consensus 835 ~~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~-~~l~-aai~IQ~~~Rg~laRk~y~~~r~a~i~I 912 (1193)
. ..........+......++.|.+++|+.......++..-. .... -+...|++++....|+.|.++..+.+++
T Consensus 874 ~-----~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~ 948 (1062)
T KOG4229|consen 874 V-----DTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLI 948 (1062)
T ss_pred c-----hhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHH
Confidence 1 1111122223344668899999999988776665555432 2223 2667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 913 QSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 913 Qs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
| |++++.|+.-...-.. -.+++-+|..|+.+..+..+.
T Consensus 949 ~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 986 (1062)
T KOG4229|consen 949 Q--RLELLGRRTCPVAGAP------------AVAAASLQNAWPVYRELSGRL 986 (1062)
T ss_pred H--HHHHhcccCCcchhhh------------hhhhhhccccchhhhhhhhhH
Confidence 9 8888877743321110 134555566666554444444
No 28
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.96 E-value=0.015 Score=71.10 Aligned_cols=78 Identities=8% Similarity=0.160 Sum_probs=57.1
Q ss_pred ccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 990 KDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAA 1067 (1193)
Q Consensus 990 ~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~el 1067 (1193)
...++.++..++..+..||.++.+++.+++.+++.+..++..+.+.+.++.++..++.++++++...-.++++..+++
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345667777788888888888888888888888888888888888888888888888877777655444444444433
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=96.83 E-value=0.21 Score=66.24 Aligned_cols=41 Identities=20% Similarity=0.454 Sum_probs=23.0
Q ss_pred HHHHHcCCCccccccCceeeeeecchhhhhhh----hhhhHHHHHHHH
Q 001002 846 AVLQQFNVLPEMYQVGYTKLYLRSGQLAALED----RRKQVLQAIIRL 889 (1193)
Q Consensus 846 ~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~----~R~~~l~aai~I 889 (1193)
.|..-++++...|. .-||+..|.+..+-. .|...+..+..|
T Consensus 117 ~i~~llg~~~~~f~---~~~~i~Qge~~~~l~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 117 EVTELLRMDAEAFV---NCAYVRQGEVNKLINATPSDRQDMIDDLLQL 161 (880)
T ss_pred HHHHHHCCCHHHhc---ceeEeeccChHHHHcCCHHHHHHHHHHHhCC
Confidence 34444677655553 347788887666543 355555555433
No 30
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.81 E-value=0.099 Score=69.02 Aligned_cols=76 Identities=22% Similarity=0.157 Sum_probs=50.2
Q ss_pred hhhHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHhHhh
Q 001002 895 GYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK---MHKLKQS 971 (1193)
Q Consensus 895 g~laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~---l~~~~~~ 971 (1193)
+.+.-.+-..+...++.||+.|||+..||+|....+ .+..||...++++.++... .......
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALK---------------RIKKIQVIQHGFRLRRLVDYELKWRLFIK 798 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhcccchhhhcccchHHHhHHH
Confidence 455555556667899999999999999999987653 4566777777777776665 3333334
Q ss_pred cchHHHH--HHHhccc
Q 001002 972 NPVNAKV--KRRSGRK 985 (1193)
Q Consensus 972 ~q~~lr~--~~ke~k~ 985 (1193)
.+..|+. .++++++
T Consensus 799 l~~~~~~~~~r~~~~~ 814 (1463)
T COG5022 799 LQPLLSLLGSRKEYRS 814 (1463)
T ss_pred hhHHhHHHhhHHHHHH
Confidence 4444443 2444444
No 31
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.74 E-value=0.23 Score=67.64 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001002 1159 KTRLREAKVRL 1169 (1193)
Q Consensus 1159 e~rL~elk~eL 1169 (1193)
+.++.+++.++
T Consensus 475 ~~~l~~l~~~l 485 (1164)
T TIGR02169 475 KEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.74 Score=57.10 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhchHHHHHHH-H--HhhhcCCCCCCCcHHHHHH
Q 001002 1105 VNHLTKEFEQRRQNFDDDAKAL-I--EIKTTQPASTVHPDVELRK 1146 (1193)
Q Consensus 1105 v~~L~kE~e~~~q~~~d~~k~l-~--E~ke~q~e~~~~~~~el~k 1146 (1193)
++.+....+-..+.+.|....+ . +.|-.+++...++..||+.
T Consensus 533 L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 533 LEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKE 577 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444555555555555555 2 2233455555555555554
No 33
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.67 E-value=0.0021 Score=43.66 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001002 909 VITLQSFARGENTRR 923 (1193)
Q Consensus 909 ~i~IQs~~Rg~~aRr 923 (1193)
+++||+.||||++|+
T Consensus 4 ai~iQ~~~R~~~~Rk 18 (21)
T PF00612_consen 4 AIIIQSYWRGYLARK 18 (21)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 34
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.56 E-value=0.0024 Score=81.03 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 001002 883 LQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASL 928 (1193)
Q Consensus 883 l~aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~ 928 (1193)
..++..||..+|||..|+.|..++.-++.||+.+||+..|+.|..+
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki 855 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKI 855 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhee
Confidence 3467899999999999999999999999999999999999999764
No 35
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.53 E-value=0.0032 Score=42.78 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001002 945 REIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 945 ~aai~IQs~~R~~laRr~~~ 964 (1193)
+|+++||+.||||++|++|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999985
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.32 Score=60.12 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=5.7
Q ss_pred ccCcceeeeeeccCC
Q 001002 800 CCGVLEIVRISRSGY 814 (1193)
Q Consensus 800 ~~gvle~vri~r~Gy 814 (1193)
|..+..+.--.+.||
T Consensus 197 Y~QlFNa~DktrsG~ 211 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGY 211 (1118)
T ss_pred HHHHhhhcccccccc
Confidence 333333333334443
No 37
>PRK11637 AmiB activator; Provisional
Probab=96.48 E-value=0.053 Score=65.71 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1018 LGQKEEENAALREQLQQYDAKWLEYEAKMK 1047 (1193)
Q Consensus 1018 l~~le~E~~~L~e~Le~~e~~~~ele~k~~ 1047 (1193)
+..++.++..++.++..++.++.+++.++.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.41 E-value=0.16 Score=63.64 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=23.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Q 001002 1095 GRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKT 1131 (1193)
Q Consensus 1095 ~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke 1131 (1193)
.+++....+.+++|....|.+...++..+..+.+.++
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666553
No 39
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.29 E-value=0.0032 Score=73.79 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=49.3
Q ss_pred ecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHH-HHHHHHHHH
Q 001002 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA-KFAMQYLAA 319 (1193)
Q Consensus 248 avNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~-k~il~yL~~ 319 (1193)
++|||...| |++.+.+.++.+..-|-|- .-+..|..-..||+||++||.|||||+-. ..++.|-..
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~-----~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~ 89 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWE-----QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS 89 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHH-----hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh
Confidence 499999999 8888888887766666553 34556666678999999999999999754 344455443
No 40
>PRK11637 AmiB activator; Provisional
Probab=96.15 E-value=0.052 Score=65.78 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1002 ~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
..+.+++.++..++.++..++.++..++.++...+.++..++.++..++..
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444443433333333333333
No 41
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.13 E-value=0.055 Score=70.87 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhhH----hHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001002 884 QAIIRLQKCFRGYQA----RSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLV 959 (1193)
Q Consensus 884 ~aai~IQ~~~Rg~la----Rk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~la 959 (1193)
.....||+.|||++. ...+.....-++.+|++.||+++|+.|....+. +++...++++||+.+|....
T Consensus 566 P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~--------~~~~~~~~i~iqs~~r~f~~ 637 (1401)
T KOG2128|consen 566 PFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQY--------FKDNMTKIIKIQSKIRKFPN 637 (1401)
T ss_pred chHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHhhhhHHHHHHHHHhccc
Confidence 367899999999984 334445568899999999999999999876642 35556789999999999999
Q ss_pred HHHHH
Q 001002 960 RKQLK 964 (1193)
Q Consensus 960 Rr~~~ 964 (1193)
|..|+
T Consensus 638 r~~y~ 642 (1401)
T KOG2128|consen 638 RKDYK 642 (1401)
T ss_pred chHHH
Confidence 99999
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.51 Score=61.21 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=6.9
Q ss_pred HHHHhhhhHhHHhhhh
Q 001002 890 QKCFRGYQARSRFREL 905 (1193)
Q Consensus 890 Q~~~Rg~laRk~y~~~ 905 (1193)
|..-|-.++.+....+
T Consensus 285 ek~~~~k~~e~ek~~l 300 (1293)
T KOG0996|consen 285 EKENRVKLVEKEKKAL 300 (1293)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.07 E-value=0.15 Score=64.84 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=18.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Q 001002 1097 ESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIK 1130 (1193)
Q Consensus 1097 el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~k 1130 (1193)
.++..+++..+|..-+..+...--|+-.+|-+.+
T Consensus 595 aL~amqdk~~~LE~sLsaEtriKldLfsaLg~ak 628 (697)
T PF09726_consen 595 ALSAMQDKNQHLENSLSAETRIKLDLFSALGDAK 628 (697)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554443
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.98 E-value=0.13 Score=64.34 Aligned_cols=26 Identities=4% Similarity=0.104 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1149 MRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1149 ~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
.+|-..+-.+|.++..|++++..|+.
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 44666666777777777777666654
No 45
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.97 E-value=4.1 Score=46.58 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccc
Q 001002 1014 AEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE----MWQKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIV 1089 (1193)
Q Consensus 1014 le~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee----~lq~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~ 1089 (1193)
+...+..++.+....+..++.+..+..++|..+.+.++ .++++|..|......++..|...-.... .+....+
T Consensus 140 L~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~-s~~d~~~-- 216 (310)
T PF09755_consen 140 LQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPP-SPRDTVN-- 216 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CcchHHh--
Confidence 33444445555555666777777777778877777666 4488888888888888888775322111 1111100
Q ss_pred cccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHH
Q 001002 1090 PDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKAL 1126 (1193)
Q Consensus 1090 ~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l 1126 (1193)
.....+-.....+.|..|..|+.++++++......-
T Consensus 217 -~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 217 -VSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred -hcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112245577778888888888888887665443
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.96 E-value=0.16 Score=64.64 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001002 1153 TWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1153 ~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
..++.-+.+|.|||.++..+-.
T Consensus 636 ~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 636 GQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566777776666533
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.80 E-value=0.69 Score=56.63 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=13.7
Q ss_pred eeeeeeccCCccccchhhH
Q 001002 805 EIVRISRSGYPTRMRHQEF 823 (1193)
Q Consensus 805 e~vri~r~Gyp~r~~~~eF 823 (1193)
++|-|.+.||.+-..|--|
T Consensus 38 DWIGiFKVGw~s~rdY~Tf 56 (546)
T PF07888_consen 38 DWIGIFKVGWSSTRDYYTF 56 (546)
T ss_pred CeeEEeecCCCchhheeeE
Confidence 4688889998876666444
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.53 E-value=3.2 Score=57.45 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1137 TVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1137 ~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
..-++++|.....+|+....+++.++.+++.++..++.
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea 470 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQA 470 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777887777777777777777777655
No 49
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.52 E-value=0.9 Score=46.68 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1101 SLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1101 ~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
+..++..|.++++.-...+......+.+.. ...+++.+-.+.++....+.+.++.++......+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d--------~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREAD--------VKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 444555566666665555555544443322 1223444444556666666666667776665544
No 50
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.49 E-value=2.7 Score=49.01 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHH
Q 001002 1032 LQQYDAKWLEYEAKMKSMEEMW----QKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNH 1107 (1193)
Q Consensus 1032 Le~~e~~~~ele~k~~klee~l----q~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~ 1107 (1193)
|+++..+..+++..+.+.++.+ =+.|..|..+..-+...|...-. .-.++..|.+.- ....++...+.--+..
T Consensus 181 leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs-~p~~prdia~~~--~~~gD~a~~~~~hi~~ 257 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVS-TPSLPRDIAKIP--DVHGDEAAAEKLHIDK 257 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCchhhhhcCc--cccCchHHHHHHHHHH
Confidence 3666666666666666666643 34456666555555555522111 111333232111 0112333444455667
Q ss_pred HHHHHHHHHhchHHHHHHHHHhh
Q 001002 1108 LTKEFEQRRQNFDDDAKALIEIK 1130 (1193)
Q Consensus 1108 L~kE~e~~~q~~~d~~k~l~E~k 1130 (1193)
|+.|+++++..+....+...|+-
T Consensus 258 l~~EveRlrt~l~~Aqk~~~ek~ 280 (552)
T KOG2129|consen 258 LQAEVERLRTYLSRAQKSYQEKL 280 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888887777766664443
No 51
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.32 E-value=1 Score=55.71 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=26.0
Q ss_pred CCCccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc
Q 001002 425 QSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLG 471 (1193)
Q Consensus 425 ~~~~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLG 471 (1193)
.|+|....+- =+.+..|-..||+..++.. ..++|-|+.--
T Consensus 360 rGGC~v~n~s-----eqsL~~~a~LLGld~~elr--~~L~aRvMqtt 399 (1259)
T KOG0163|consen 360 RGGCQVSNGS-----EQSLTIAAELLGLDQTELR--TGLCARVMQTT 399 (1259)
T ss_pred CCceecccCc-----hhhHHHHHHHhCCCHHHHH--HHHHHHHHHhc
Confidence 4667654442 2457888899999988754 35566666653
No 52
>PRK09039 hypothetical protein; Validated
Probab=95.32 E-value=0.93 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhchHHHHHHH
Q 001002 1105 VNHLTKEFEQRRQNFDDDAKAL 1126 (1193)
Q Consensus 1105 v~~L~kE~e~~~q~~~d~~k~l 1126 (1193)
|..|..+++.++.++...+..+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 53
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.28 E-value=0.11 Score=63.74 Aligned_cols=57 Identities=19% Similarity=0.089 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIR--DEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 906 r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~--~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
..-++.||+.||||++|.+|++++. ++++|+ +| -+.+..+..||..+|++..++.|.
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka-~~~ii~-wyR~~K~ks~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKA-SATIIR-WYRRYKLKSYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 3568889999999999999999995 344444 66 445677889999999999999887
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=95.22 E-value=4.8 Score=53.48 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhh----hcC-------CCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1098 SNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIK----TTQ-------PAS--TVHPDVELRKLKMRFETWKKDYKTRLRE 1164 (1193)
Q Consensus 1098 l~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~k----e~q-------~e~--~~~~~~el~kLk~~lE~~kk~~e~rL~e 1164 (1193)
+...+.....+.++....+.......+.+.+.+ ++. ++. .....+++......++..+.+++.++.+
T Consensus 414 l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 493 (880)
T PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666555555555555555554443 111 111 0122233444444455555555555555
Q ss_pred HHHHHHhhc
Q 001002 1165 AKVRLNKLG 1173 (1193)
Q Consensus 1165 lk~eL~~L~ 1173 (1193)
++.+++.++
T Consensus 494 ~~~~~e~l~ 502 (880)
T PRK02224 494 VEERLERAE 502 (880)
T ss_pred HHHHHHHHH
Confidence 555555443
No 55
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.21 E-value=0.83 Score=53.83 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=51.7
Q ss_pred cccccccccCcHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 983 GRKSSDMKDVPQEQVQALPTALAELQRRVLKA---EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMAS 1059 (1193)
Q Consensus 983 ~k~l~e~~~~l~~el~~l~~~l~eLe~r~~el---e~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~e 1059 (1193)
++++..++...+++++.+++....|..++.+. ..+......|..+|..+|....-+..++...+..-+-+.|...++
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 33444445555666666666666666655532 122334555666677777766666666666666666666677777
Q ss_pred HHHHHHHHHH
Q 001002 1060 LQMSLAAARK 1069 (1193)
Q Consensus 1060 Lq~~l~elk~ 1069 (1193)
|.+.+.+.+.
T Consensus 412 lek~~~~~~s 421 (622)
T COG5185 412 LEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHH
Confidence 7666554433
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.10 E-value=0.35 Score=57.31 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1007 LQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARK 1069 (1193)
Q Consensus 1007 Le~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~ 1069 (1193)
|+..+.+++..+..++.++.+....+...+..+.+++..+.+++....++-.-|-..+..+..
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333344444444444444444444444444444555555555444
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.00 E-value=0.73 Score=48.91 Aligned_cols=28 Identities=14% Similarity=0.117 Sum_probs=16.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1137 TVHPDVELRKLKMRFETWKKDYKTRLRE 1164 (1193)
Q Consensus 1137 ~~~~~~el~kLk~~lE~~kk~~e~rL~e 1164 (1193)
....+++.+.+.+.+-..+.+++.+|..
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666544
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.99 E-value=1.7 Score=48.23 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001002 1059 SLQMSL 1064 (1193)
Q Consensus 1059 eLq~~l 1064 (1193)
.|+.++
T Consensus 93 aL~~E~ 98 (239)
T COG1579 93 ALNIEI 98 (239)
T ss_pred HHHHHH
Confidence 333333
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.99 E-value=8.6 Score=52.77 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCccccccCceeeeeecchhhhhhhh
Q 001002 843 ISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDR 878 (1193)
Q Consensus 843 ~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~ 878 (1193)
....++...++..+.|- ++-.|.+..+-..
T Consensus 123 dI~~l~~~~gi~~~~~~------iV~QG~V~~i~~~ 152 (1163)
T COG1196 123 DIQDLLADSGIGKESYS------IVSQGKVEEIINA 152 (1163)
T ss_pred HHHHHHHhcCCCCCCCc------eeecccHHHHHcC
Confidence 34456666677665552 3555655554433
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.98 E-value=1.6 Score=50.62 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=58.3
Q ss_pred cCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 991 DVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKS 1070 (1193)
Q Consensus 991 ~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~s 1070 (1193)
..++.++..+...+.+++.++.+..+....++.++..|+..++.......+++.++..+++++.-....-+.++.++...
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 34556677777788888888888777788888888888888888888888888888888777654444444455555554
Q ss_pred hh
Q 001002 1071 LA 1072 (1193)
Q Consensus 1071 L~ 1072 (1193)
+.
T Consensus 151 ~~ 152 (312)
T PF00038_consen 151 IQ 152 (312)
T ss_dssp --
T ss_pred cc
Confidence 43
No 61
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.96 E-value=0.022 Score=40.83 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001002 907 NGVITLQSFARGENTRRRH 925 (1193)
Q Consensus 907 ~a~i~IQs~~Rg~~aRr~~ 925 (1193)
.+++.||++|||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444445555555554444
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.94 E-value=1.3 Score=57.49 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=27.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Q 001002 1095 GRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKT 1131 (1193)
Q Consensus 1095 ~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke 1131 (1193)
..++.+.+++.+.|.++.+.++.+...+...+.++++
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888877777766666664
No 63
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.93 E-value=0.027 Score=40.38 Aligned_cols=19 Identities=47% Similarity=0.753 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001002 945 REIICLQSAIRGWLVRKQL 963 (1193)
Q Consensus 945 ~aai~IQs~~R~~laRr~~ 963 (1193)
+++++||+.|||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666665
No 64
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.91 E-value=11 Score=52.00 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCCCCCCCccchhhHhhhhcccCcceeeeeecc-------CCcc-----ccchhhHHHhhhcccc
Q 001002 779 KPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRS-------GYPT-----RMRHQEFAGRYGVLLS 832 (1193)
Q Consensus 779 kPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~-------Gyp~-----r~~~~eF~~RY~~L~~ 832 (1193)
.++....+-.++..-+..+++..||-=+-.|.-. |=+. +..+..+..||.+.-+
T Consensus 111 ~~~~~~~~~~~~~~e~~r~~~~~gv~~S~~i~~~eYR~IIqn~~~~l~~~~~~lr~la~~fSL~~s 176 (1201)
T PF12128_consen 111 DENNGDLVQALSMWELIRELRRKGVQVSRKITTSEYRAIIQNNRSLLGKDRKELRALAARFSLCES 176 (1201)
T ss_pred cccCccccccccHHHHHHHHHhCCCeeecCcCHHHHHHHHcCCCccccccchHHHHHHHhcCcCCC
Confidence 4444344455666677777777666433333211 1111 2345566777876443
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.86 E-value=0.28 Score=63.43 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1019 GQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 1019 ~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
.+.+.++..|...++.++....+...++
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.84 E-value=1 Score=55.88 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=32.6
Q ss_pred ccccccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 986 SSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 986 l~e~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
+++.+..++.++..++..+..++.+...+++.+..+++.+.+-+.+++....+..+++.++
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444555666666666666666666666655555555444444444444444444444433
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.81 E-value=1.5 Score=54.89 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1004 LAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLAS 1073 (1193)
Q Consensus 1004 l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~ 1073 (1193)
+.+++.+..++......++.++..++.++..+.....++++.+++++.. +..++..++.++..+.-
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~----~~~~~~~l~~~~~~~~~ 280 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTA----AAKIKSKIEQFQKVIKM 280 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555555555555555555555555544444 44444444444444443
No 68
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.73 E-value=1.1 Score=56.14 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1098 SNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMR---FETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1098 l~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~---lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
+.....++.+|..+-+.-+.-+.+.-..+.+.........+...++++.++++ ++...+.-+..+.+|+.+++++..
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666777777777777777666666555544334444455666665544 344444555566677777777755
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.68 E-value=1.2 Score=56.18 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=3.3
Q ss_pred HHHhchHHH
Q 001002 1114 QRRQNFDDD 1122 (1193)
Q Consensus 1114 ~~~q~~~d~ 1122 (1193)
++++++.+.
T Consensus 164 eLK~QL~El 172 (617)
T PF15070_consen 164 ELKEQLAEL 172 (617)
T ss_pred HHHHHHHHH
Confidence 333333333
No 70
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.62 E-value=0.024 Score=55.53 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998875
No 71
>PTZ00014 myosin-A; Provisional
Probab=94.56 E-value=0.06 Score=69.69 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQ 962 (1193)
Q Consensus 906 r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~ 962 (1193)
...+..||++||||++|+.|..++ .++++||++||+|++++.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~---------------~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNI---------------KSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999876 578999999999998875
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.54 E-value=23 Score=46.65 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1149 MRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1149 ~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
-+-+..+.++.++|..|+.+++.+-
T Consensus 1720 ~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1720 LRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3345556666667777776666553
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.53 E-value=1.5 Score=53.86 Aligned_cols=9 Identities=22% Similarity=0.043 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 001002 909 VITLQSFAR 917 (1193)
Q Consensus 909 ~i~IQs~~R 917 (1193)
+..+|..+-
T Consensus 138 a~~lQ~qlE 146 (546)
T PF07888_consen 138 AQLLQNQLE 146 (546)
T ss_pred HHHHHHHHH
Confidence 444565543
No 74
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.50 E-value=3.5 Score=56.41 Aligned_cols=7 Identities=57% Similarity=1.175 Sum_probs=2.7
Q ss_pred ccCcccC
Q 001002 574 IYGFESF 580 (1193)
Q Consensus 574 i~GFE~f 580 (1193)
+.||.+|
T Consensus 8 l~gFKSF 14 (1163)
T COG1196 8 LKGFKSF 14 (1163)
T ss_pred EECcccC
Confidence 3344333
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.49 E-value=5.7 Score=55.15 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=16.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+|+|.+|||||++...|+-.|
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccc
Confidence 467777788888877766665444
No 76
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=2.1 Score=48.07 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=40.1
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQM 1062 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~ 1062 (1193)
++.++...+..+..|..++.+......+++++++.++..+..++.++.++++.+....+.+.+++..++.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555566666666666666666666666666665555555555543
No 77
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.24 E-value=0.38 Score=56.67 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1140 PDVELRKLKMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1140 ~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
.+.++-.|..+|++-.++..++-+.||..+++|-
T Consensus 490 ~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 490 REQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456667777888877777777788888888774
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=94.16 E-value=1.1 Score=59.42 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1148 KMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1148 k~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
...+...+.+++.++.+++..++.|.
T Consensus 407 i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 407 ISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566665555554
No 79
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=4.6 Score=49.39 Aligned_cols=78 Identities=10% Similarity=0.163 Sum_probs=41.0
Q ss_pred cHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKA---EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARK 1069 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~el---e~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~ 1069 (1193)
.+++...++....+|+..++.- .+....+..|+.+|...+.....+...+..+.-.++.+.+....+++..+.++..
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444321 1223445556666666666666666666666655555555656666555554433
Q ss_pred H
Q 001002 1070 S 1070 (1193)
Q Consensus 1070 s 1070 (1193)
.
T Consensus 386 l 386 (581)
T KOG0995|consen 386 L 386 (581)
T ss_pred H
Confidence 3
No 80
>PRK09039 hypothetical protein; Validated
Probab=93.96 E-value=1.2 Score=52.34 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 001002 948 ICLQSAIRGWLVRK 961 (1193)
Q Consensus 948 i~IQs~~R~~laRr 961 (1193)
++.|..+..-+..+
T Consensus 38 ~~~q~fLs~~i~~~ 51 (343)
T PRK09039 38 VVAQFFLSREISGK 51 (343)
T ss_pred HHHHHHHHHHHhhH
Confidence 55666665544333
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.94 E-value=3.4 Score=51.86 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=7.7
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 001002 994 QEQVQALPTALAELQRRVLK 1013 (1193)
Q Consensus 994 ~~el~~l~~~l~eLe~r~~e 1013 (1193)
+..+..++..+..++..+..
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444333333
No 82
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=23 Score=46.20 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=33.3
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW---QKQMASLQMSLAAARK 1069 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~l---q~~~~eLq~~l~elk~ 1069 (1193)
|+.++..++..+...+..+......+...++..+++...+.+.+..+.+-+.++.+.++.. ++...+...-+++.+.
T Consensus 299 L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~ 378 (1174)
T KOG0933|consen 299 LEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEE 378 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333334444444444444444444444444444444333322 3333333444444444
Q ss_pred Hhhc
Q 001002 1070 SLAS 1073 (1193)
Q Consensus 1070 sL~~ 1073 (1193)
.+..
T Consensus 379 ~~es 382 (1174)
T KOG0933|consen 379 LVES 382 (1174)
T ss_pred HHHH
Confidence 4443
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.71 E-value=4.3 Score=47.51 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHHH
Q 001002 1140 PDVELRKLKMRFE 1152 (1193)
Q Consensus 1140 ~~~el~kLk~~lE 1152 (1193)
...|+.+|+.+++
T Consensus 274 t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 274 TRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHH
Confidence 3445555555444
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.63 E-value=6.7 Score=45.93 Aligned_cols=8 Identities=38% Similarity=0.385 Sum_probs=5.6
Q ss_pred HhccCCee
Q 001002 767 LENTRPHF 774 (1193)
Q Consensus 767 L~~t~~hf 774 (1193)
|+-|+.||
T Consensus 20 L~~~~I~F 27 (325)
T PF08317_consen 20 LNMTGIRF 27 (325)
T ss_pred HHHhCcee
Confidence 45677787
No 85
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.50 E-value=0.67 Score=51.96 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001002 1148 KMRFETWKKDYKTRLREAKVRLNKLGQSE 1176 (1193)
Q Consensus 1148 k~~lE~~kk~~e~rL~elk~eL~~L~~~~ 1176 (1193)
+...-...+.++.+|.+|+.+|..|+.++
T Consensus 177 R~t~~EKnk~lq~QL~~L~~EL~~~kde~ 205 (246)
T PF00769_consen 177 RVTYAEKNKRLQEQLKELKSELEQLKDEE 205 (246)
T ss_dssp ---HHHH-HHHHHHHHHHHHHHHTTB-CC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 34455667788899999999999988743
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.50 E-value=2 Score=58.87 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+.-+-|+|-.|||||+..++|.=|.-+
T Consensus 17 DG~t~i~GTNG~GKTTlLRlip~FYGa 43 (1201)
T PF12128_consen 17 DGHTHICGTNGVGKTTLLRLIPFFYGA 43 (1201)
T ss_pred CCceeeecCCCCcHHHHHHHHHHhcCC
Confidence 445779999999999999999877644
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.46 E-value=9.1 Score=44.53 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhchHHHHHHH
Q 001002 1098 SNGSLTAVNHLTKEFEQRRQNFDDDAKAL 1126 (1193)
Q Consensus 1098 l~~~e~~v~~L~kE~e~~~q~~~d~~k~l 1126 (1193)
+..-...+..+.+||..+.+.......++
T Consensus 205 la~r~~a~q~r~~ela~r~aa~Qq~~q~i 233 (499)
T COG4372 205 LATRANAAQARTEELARRAAAAQQTAQAI 233 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777777666555444
No 88
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.36 E-value=2.4 Score=48.22 Aligned_cols=119 Identities=15% Similarity=0.063 Sum_probs=72.6
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001002 992 VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSL 1071 (1193)
Q Consensus 992 ~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL 1071 (1193)
.+..++-..++.......+...+|..+..+++|+..++-+|+.+..+..|.+++.+++..++.+.+.--+.-.++-...+
T Consensus 110 kL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 110 KLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34555666666777777777777777888888888888888888888777777776666554444333222222222111
Q ss_pred hccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHH
Q 001002 1072 ASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDA 1123 (1193)
Q Consensus 1072 ~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~ 1123 (1193)
. +.++. -...+.-+.+++++|..|.-|+..+-|--.+..
T Consensus 190 ~----eq~~m---------l~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~ 228 (401)
T PF06785_consen 190 V----EQHSM---------LDKRQAYIGKLESKVQDLMYEIRNLLQLESDMK 228 (401)
T ss_pred c----cchhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 11100 011133477788888888888888877655443
No 89
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.34 E-value=0.084 Score=59.39 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.....++|+|++|+|||+.++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999998876654
No 90
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.31 E-value=0.65 Score=52.96 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccc-cc
Q 001002 1013 KAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIV-PD 1091 (1193)
Q Consensus 1013 ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~-~~ 1091 (1193)
.+...+..+++||..|+.+...+......+|++-+++...+-+++.+...++..+...|+...++-. ..+ ..
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~-------rQQEEI 236 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENR-------RQQEEI 236 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3444556677788888888888888888888887777777777777777777777777776433211 111 12
Q ss_pred cCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001002 1092 AGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNK 1171 (1193)
Q Consensus 1092 ~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~ 1171 (1193)
..++.++..++.+...+..|.+.+.+.+......-..+. .|+ ++|+..-.+-.+-|.+++++++.
T Consensus 237 t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~-----------aEL----~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 237 TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ-----------AEL----QELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------HHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666666666666666666666554432222111 122 33555555666677888888888
Q ss_pred hcc
Q 001002 1172 LGQ 1174 (1193)
Q Consensus 1172 L~~ 1174 (1193)
+++
T Consensus 302 lR~ 304 (306)
T PF04849_consen 302 LRK 304 (306)
T ss_pred hhC
Confidence 765
No 91
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.27 E-value=0.061 Score=53.28 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999887764
No 92
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.25 E-value=13 Score=46.02 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=21.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhchHHHHHH
Q 001002 1095 GRESNGSLTAVNHLTKEFEQRRQNFDDDAKA 1125 (1193)
Q Consensus 1095 ~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~ 1125 (1193)
+.++...+.++-.|.+|.+.+++++..+...
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566777777778888888888777665433
No 93
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.21 E-value=0.069 Score=56.11 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=22.6
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...+...+|+|+|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456678999999999999999999998888863
No 94
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.19 E-value=0.025 Score=73.94 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1133 QPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1133 q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
.+.......++...-...+++.++.+...+.++..+|++...
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555545555555555555566655555555544
No 95
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.15 E-value=5.5 Score=52.14 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=11.3
Q ss_pred ChHHHHHHHHHHcCCC
Q 001002 839 DPLSISVAVLQQFNVL 854 (1193)
Q Consensus 839 d~~~~~~~iL~~~~i~ 854 (1193)
..++....|+..|+|+
T Consensus 159 tKk~dl~~vv~~f~I~ 174 (1074)
T KOG0250|consen 159 TKKEDLDTVVDHFNIQ 174 (1074)
T ss_pred ccHHHHHHHHHHhCcC
Confidence 3455677888888874
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.14 E-value=9.3 Score=47.27 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHH-HHhhhc
Q 001002 1054 QKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKAL-IEIKTT 1132 (1193)
Q Consensus 1054 q~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l-~E~ke~ 1132 (1193)
+..+..|+.+.+.++.++++........ +..+. ....-.+....+.+.+|..++++++....+..... .++...
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~--~~~~i---~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~l 322 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLA--KIDDI---DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISAL 322 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCch---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777654432211 11100 00001122344445555555555555554442222 222210
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1133 QPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1133 q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
. ...+....++..++..|+.. .| ..++|.+|..|+.
T Consensus 323 e-~~l~~~~~~leel~~kL~~~-sD----YeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 323 E-KELKAKISELEELKEKLNSR-SD----YEEIKKELSILKA 358 (629)
T ss_pred H-HHHHHHHHHHHHHHHHHhhh-cc----HHHHHHHHHHHHH
Confidence 0 00011223444444444433 33 4788888888877
No 97
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.10 E-value=0.54 Score=61.23 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1147 LKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1147 Lk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
++..++...+-++.++++...+.+++
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444
No 98
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.09 E-value=0.065 Score=52.67 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 99
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.01 E-value=0.12 Score=51.03 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999988876
No 100
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.01 E-value=0.82 Score=63.19 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il 314 (1193)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 477999999999998776664
No 101
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.98 E-value=0.028 Score=73.49 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1150 RFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1150 ~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
.++..++++..+|.++...++.+
T Consensus 318 elEeaKKkL~~~L~el~e~le~~ 340 (859)
T PF01576_consen 318 ELEEAKKKLERKLQELQEQLEEA 340 (859)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.91 E-value=1.5 Score=45.15 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMK 1047 (1193)
Q Consensus 1000 l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~ 1047 (1193)
.......++.++..++.....++.++..|+.+++.++.++..++..+.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444443
No 103
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.83 E-value=0.079 Score=55.97 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998876653
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.68 E-value=2.4 Score=53.27 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=14.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhchHHHHH
Q 001002 1096 RESNGSLTAVNHLTKEFEQRRQNFDDDAK 1124 (1193)
Q Consensus 1096 ~el~~~e~~v~~L~kE~e~~~q~~~d~~k 1124 (1193)
.+++.....+..+..|....++.+..+..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444443
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.66 E-value=1.6 Score=53.71 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1147 LKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1147 Lk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
|...+.+-.-+|+..+...+.+++..
T Consensus 247 L~~Ai~eiRaqye~~~~~nR~diE~~ 272 (546)
T KOG0977|consen 247 LALAIREIRAQYEAISRQNRKDIESW 272 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333344444444444444433
No 106
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.60 E-value=0.1 Score=46.43 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999888
No 107
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.53 E-value=5.7 Score=49.00 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=40.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001002 994 QEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW---QKQMASLQMSLAAARKS 1070 (1193)
Q Consensus 994 ~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~l---q~~~~eLq~~l~elk~s 1070 (1193)
+.++..++..+.++..++.+.++.+...+++.......+.+++.+..-+..+.+.++++. ..+...|..++..+++.
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444555555555555555554444444455455555555555555555555555542 33344455555555555
Q ss_pred hhc
Q 001002 1071 LAS 1073 (1193)
Q Consensus 1071 L~~ 1073 (1193)
+..
T Consensus 192 ld~ 194 (546)
T KOG0977|consen 192 LDD 194 (546)
T ss_pred HHH
Confidence 544
No 108
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.47 E-value=45 Score=43.65 Aligned_cols=77 Identities=13% Similarity=0.282 Sum_probs=36.9
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 1072 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~ 1072 (1193)
.+.++.++...+..+..++++....+...+.+...|+-+.++++.....++..+.+++.. +++|..++.+++..+.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~----~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQ----ISSLKSELGNLEAKVD 860 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 334444444455555555544444444445555555555555544444444444444333 4555555555544444
Q ss_pred c
Q 001002 1073 S 1073 (1193)
Q Consensus 1073 ~ 1073 (1193)
.
T Consensus 861 ~ 861 (1174)
T KOG0933|consen 861 K 861 (1174)
T ss_pred h
Confidence 3
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.25 E-value=14 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=9.5
Q ss_pred eeeeccCCccccchhhHHHh
Q 001002 807 VRISRSGYPTRMRHQEFAGR 826 (1193)
Q Consensus 807 vri~r~Gyp~r~~~~eF~~R 826 (1193)
|.+|..+|+..=...+|...
T Consensus 680 C~LC~R~f~~eee~~~f~~~ 699 (1311)
T TIGR00606 680 CPVCQRVFQTEAELQEFISD 699 (1311)
T ss_pred CCCCCCCCCChhHHHHHHHH
Confidence 44555555544334445443
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=5.4 Score=44.86 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 999 ALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 999 ~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
.-...+.+++.....++..+..+..++.++..++...+.++.+...++++++.+
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555444
No 111
>PRK03918 chromosome segregation protein; Provisional
Probab=92.19 E-value=1.7 Score=57.71 Aligned_cols=13 Identities=31% Similarity=0.882 Sum_probs=8.3
Q ss_pred eeeeeecchhhhh
Q 001002 863 TKLYLRSGQLAAL 875 (1193)
Q Consensus 863 TKVFlr~g~l~~L 875 (1193)
.-||+..|.+..+
T Consensus 128 ~~~~~~Qg~~~~~ 140 (880)
T PRK03918 128 NAIYIRQGEIDAI 140 (880)
T ss_pred eeEEEeccchHHH
Confidence 3467777776554
No 112
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.14 E-value=4.4 Score=48.30 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1145 RKLKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1145 ~kLk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
+++.++++..+...+.++.+|+.+=..|
T Consensus 209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 209 KKTLAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444444444444444444433333
No 113
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.09 E-value=9 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.4
Q ss_pred hccCCeeeEecCCCCCCCCCc
Q 001002 768 ENTRPHFIRCIKPNSKQLPGI 788 (1193)
Q Consensus 768 ~~t~~hfIrCIkPN~~~~p~~ 788 (1193)
..|..+||.|-+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 346679999999977665544
No 114
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.05 E-value=0.1 Score=51.40 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999975
No 115
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.86 E-value=4 Score=51.99 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=5.3
Q ss_pred hCCCCcccc
Q 001002 668 LGSNSCFKG 676 (1193)
Q Consensus 668 ~~~~~~f~~ 676 (1193)
|.+||.|.+
T Consensus 120 H~k~p~FpG 128 (980)
T KOG0980|consen 120 HAKHPVFPG 128 (980)
T ss_pred hhcCCCCCC
Confidence 345677664
No 116
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.84 E-value=2.3 Score=54.43 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcC
Q 001002 1054 QKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQ 1133 (1193)
Q Consensus 1054 q~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q 1133 (1193)
+..++++..++.+++.+|.....+..+.... +....++...++-++..|..+.+.-+|+...+...+.+++..-
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~------~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEKEQLKAR------ETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3445556666666665555544332211110 0111122223344455666666666666666666665555321
Q ss_pred CCCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1134 PASTVHPDVELRK---LKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1134 ~e~~~~~~~el~k---Lk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
.+..+||.+ .-+.+...-..+..||..++.....|
T Consensus 338 ----~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 338 ----EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred ----HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 122334433 33445555566666777766665555
No 117
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.77 E-value=0.13 Score=55.59 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=22.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.|+|+|.+|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888764
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.63 E-value=16 Score=39.82 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1193)
Q Consensus 998 ~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee 1051 (1193)
..+.+.++++..+....+..+.+...|+..|.+-|+..+.+..++...+...+.
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666777777777777777777777777777666665543
No 119
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.62 E-value=0.43 Score=57.59 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 275 HiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
.++.+.-.|...++.-.+.|.+.|.|.||+|||+..+.|+.+
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 345556678888877788999999999999999998877654
No 120
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.60 E-value=0.19 Score=58.44 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=27.8
Q ss_pred HHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 284 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...++..+. .|||+|..|||||++.+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455556554 5999999999999999999998864
No 121
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.60 E-value=0.16 Score=55.19 Aligned_cols=27 Identities=37% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998776
No 122
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.53 E-value=0.21 Score=52.04 Aligned_cols=30 Identities=37% Similarity=0.348 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
.-.|.|+|.||||||+.++.+-+.|-..+-
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~ 31 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGI 31 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999987653
No 123
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.43 E-value=0.13 Score=50.23 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877754
No 124
>PRK06696 uridine kinase; Validated
Probab=91.36 E-value=0.26 Score=54.28 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 278 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 278 avA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+|+..+.. ..+..--|.|+|.||||||+.++.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345554432 3456778899999999999999999988854
No 125
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.34 E-value=0.13 Score=55.21 Aligned_cols=26 Identities=50% Similarity=0.535 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
|-|+|.||||||+.++.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999998644
No 126
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.28 E-value=0.17 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
...|+|+|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 689999999999999999777664
No 127
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.27 E-value=0.17 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il 314 (1193)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999875
No 128
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.26 E-value=5.7 Score=46.12 Aligned_cols=29 Identities=7% Similarity=-0.021 Sum_probs=15.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhchHHHHHH
Q 001002 1097 ESNGSLTAVNHLTKEFEQRRQNFDDDAKA 1125 (1193)
Q Consensus 1097 el~~~e~~v~~L~kE~e~~~q~~~d~~k~ 1125 (1193)
++.+-+.+...|..+...++|....+++.
T Consensus 253 ~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 253 QIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555554443
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.23 E-value=5.3 Score=42.65 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001002 1156 KDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1156 k~~e~rL~elk~eL~~L 1172 (1193)
.+|-.-..+++.+..+|
T Consensus 168 eEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 168 EEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 130
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.22 E-value=14 Score=48.00 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1139 HPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1139 ~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
..++-|...-+..+..+-+.+.++.+|..+|++..
T Consensus 569 ~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~ 603 (775)
T PF10174_consen 569 AEVERLLDILREAENEKNDKEKKIGELEKELEKAQ 603 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 33444444445677777778888888888876643
No 131
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.15 E-value=17 Score=41.94 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhh-cC----------C---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1104 AVNHLTKEFEQRRQNFDDDAKALIEIKT-TQ----------P---ASTVHPDVELRKLKMRFETWKKDYKTRLREAKVR 1168 (1193)
Q Consensus 1104 ~v~~L~kE~e~~~q~~~d~~k~l~E~ke-~q----------~---e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~e 1168 (1193)
++.+|..|.+.+..++..+...+.+.+. +. + +...+++..+--+.++-.+.+-+|+.+|...+-+
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQe 298 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQE 298 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 4667777777776666666655644331 11 0 0011122223345556666666666666555443
No 132
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.15 E-value=0.15 Score=55.04 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.|+|.|.||||||+.++.++.++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999988765
No 133
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.12 E-value=0.16 Score=54.71 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987776
No 134
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.10 E-value=0.23 Score=56.26 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=27.2
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
++..++... .-.|+|+|++|||||++.+.++.++..
T Consensus 71 ~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 71 IFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 344554322 346999999999999999999988753
No 135
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.01 E-value=0.14 Score=58.63 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
++.+.+=|.||||||||.+++.||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568888999999999999999999885
No 136
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.98 E-value=34 Score=45.12 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=7.2
Q ss_pred EecCCCCcCC-CCChHHH
Q 001002 247 IAVNPFKAVP-IYGNKFI 263 (1193)
Q Consensus 247 iavNP~k~l~-~y~~~~~ 263 (1193)
=++-|--.+| -|+.++.
T Consensus 208 rvl~P~~~iedPYs~~IQ 225 (1758)
T KOG0994|consen 208 RVLDPAIDIEDPYSAKIQ 225 (1758)
T ss_pred EecCCCCCCCCchhHHHH
Confidence 3444444443 3444443
No 137
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.97 E-value=0.2 Score=54.43 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567788999999999999988876653
No 138
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.92 E-value=1.4 Score=53.74 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1021 KEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1021 le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
+-.|+..|+-++..+|++..++|.+.+.-|..
T Consensus 179 LmaevSeLKLkltalEkeq~e~E~K~R~se~l 210 (861)
T KOG1899|consen 179 LMAEVSELKLKLTALEKEQNETEKKLRLSENL 210 (861)
T ss_pred HHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHH
Confidence 34444444444555555555555555444444
No 139
>PRK08233 hypothetical protein; Provisional
Probab=90.80 E-value=0.15 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999988877653
No 140
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.79 E-value=3.6 Score=52.84 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee 1051 (1193)
+...+.++.+|++.+.+.+..+.+...+++.+..++++.+..+........++..
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~ 727 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKR 727 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444555556666666666666666666666666666666666555444444333
No 141
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.78 E-value=0.17 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
-.-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999887654
No 142
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.75 E-value=0.39 Score=48.69 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+++|+.|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999988876
No 143
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=10 Score=46.08 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1001 PTALAELQRRVLKAEATLGQKEEENAALREQLQQY 1035 (1193)
Q Consensus 1001 ~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~ 1035 (1193)
.+....++.++..++-.++++.++..+++.+|.+.
T Consensus 372 as~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 372 ASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334344444444444444444444433
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.70 E-value=4.4 Score=48.05 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=61.3
Q ss_pred cccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 989 MKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAAR 1068 (1193)
Q Consensus 989 ~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk 1068 (1193)
....++.+.+..+..+.+++.++.+.++++...++++..|.+.+.--.....++++..+.......+++.+|+.|+.++=
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34456666677777788888888888888888888888888887777777777777777776677777888887777544
Q ss_pred HHhh
Q 001002 1069 KSLA 1072 (1193)
Q Consensus 1069 ~sL~ 1072 (1193)
--+.
T Consensus 449 f~le 452 (493)
T KOG0804|consen 449 FFLE 452 (493)
T ss_pred eehh
Confidence 3333
No 145
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.68 E-value=0.53 Score=52.03 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=29.1
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
......-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467788999999999999999999998887654
No 146
>PRK06762 hypothetical protein; Provisional
Probab=90.66 E-value=0.22 Score=51.91 Aligned_cols=24 Identities=50% Similarity=0.603 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 147
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.61 E-value=0.21 Score=52.63 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.....|+|+|.||||||+.++.+...|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999888864
No 148
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.50 E-value=0.37 Score=52.71 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444566789999999999999999999988764
No 149
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.47 E-value=0.18 Score=52.41 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 150
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.36 E-value=32 Score=48.08 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1141 DVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1141 ~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
..|..+++.++-+.. .++.+|.-++.+|+....
T Consensus 1507 ~~E~lk~r~Rl~~ee-q~~~~I~rl~~eLe~~~~ 1539 (1822)
T KOG4674|consen 1507 AAENLKLRSRLAKEE-QYQKEISRLKEELESTKE 1539 (1822)
T ss_pred HHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHH
Confidence 344444555555544 666666666666665544
No 151
>PRK06547 hypothetical protein; Provisional
Probab=90.34 E-value=0.39 Score=50.89 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=24.7
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
......-|+|+|.||||||+.++.+.+.+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667889999999999999999987764
No 152
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.33 E-value=5.2 Score=43.18 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1003 ALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSME 1050 (1193)
Q Consensus 1003 ~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~kle 1050 (1193)
++.+++....++.+++.+++.+..++++++..++.+++.+++..+++.
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 333333333344444444444444444444444444444444444433
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.32 E-value=31 Score=40.20 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=5.4
Q ss_pred HhccCCeee
Q 001002 767 LENTRPHFI 775 (1193)
Q Consensus 767 L~~t~~hfI 775 (1193)
|+-|+.||.
T Consensus 16 L~~t~I~Fm 24 (312)
T smart00787 16 LNMTGIRFM 24 (312)
T ss_pred HHHcCceee
Confidence 455677773
No 154
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.32 E-value=0.21 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 155
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=90.31 E-value=1.2 Score=57.56 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 885 AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 885 aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
..+.++..++++..|. .-.++..||.++|+|+.|+.|..++. -+++||+++||+..|+.|+
T Consensus 793 ~~m~~~~a~~~~~~r~----~~~aa~~iq~~f~~yk~r~~~l~tr~---------------p~v~iqa~~rg~q~r~dy~ 853 (975)
T KOG0520|consen 793 VSMKASSAFSMCDDRS----DPAAASRIQKKFRGYKQRKEFLSTRQ---------------PIVKIQAAVRGYQVRKDYR 853 (975)
T ss_pred hhhhcccchhcCcccc----chhHHHHhhhhhhhHHhhhhhcccCC---------------ccccchhhhhchhHhhhhh
Confidence 4567777777444432 24689999999999999999999985 4799999999999999999
Q ss_pred -hhHh---HhhcchHHHHHHHhcccc
Q 001002 965 -MHKL---KQSNPVNAKVKRRSGRKS 986 (1193)
Q Consensus 965 -l~~~---~~~~q~~lr~~~ke~k~l 986 (1193)
+-+. -.+....||.+.+.++..
T Consensus 854 ki~wSv~~lek~~lrwR~k~~g~Rgf 879 (975)
T KOG0520|consen 854 KITWSVGVLEKLILRWRRKGKGFRGF 879 (975)
T ss_pred eechhhhHHHHHHHHHHHhhhhhccc
Confidence 2221 123344566665555554
No 156
>PTZ00301 uridine kinase; Provisional
Probab=90.23 E-value=0.22 Score=54.56 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|-|+|.||||||+.++.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 66899999999999998877664
No 157
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.22 E-value=5.3 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1151 FETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1151 lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
-+-.++++..+|.+++.++..++.
T Consensus 193 Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 193 EQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777654
No 158
>PRK07261 topology modulation protein; Provisional
Probab=90.17 E-value=0.21 Score=52.71 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~y 316 (1193)
-|+|.|.||||||+.++.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999887544
No 159
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.17 E-value=16 Score=41.04 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1140 PDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1140 ~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
-.++..++...++..+..-+..+.+++.+++.+.+
T Consensus 155 l~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 155 LEEEENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778889999999999999999999888866
No 160
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.17 E-value=0.25 Score=52.62 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=17 Score=46.16 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=52.3
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 1072 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~ 1072 (1193)
.+.+.+...+.++++...+.+....+.++.-+++.+++....++.++.+++++.+...+. ...|+.++..++.+|.
T Consensus 641 ee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~----hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 641 EEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISE----HSQLKDQLDLLKNQLG 716 (970)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 344444455666666666666666666777777777777777777777766666665554 5667777788888877
Q ss_pred ccC
Q 001002 1073 SDN 1075 (1193)
Q Consensus 1073 ~~e 1075 (1193)
...
T Consensus 717 ~~~ 719 (970)
T KOG0946|consen 717 IIS 719 (970)
T ss_pred ccc
Confidence 543
No 162
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.10 E-value=44 Score=46.85 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=17.7
Q ss_pred HhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 001002 898 ARSRFRELCNGVITLQSFARGENTRRRHASLG 929 (1193)
Q Consensus 898 aRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r 929 (1193)
.+..|..++.-+..|++-.+.....+.|...+
T Consensus 659 l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ek 690 (1822)
T KOG4674|consen 659 LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEK 690 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666666666666555555444444433
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.09 E-value=3.1 Score=54.63 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDA 1037 (1193)
Q Consensus 1002 ~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~ 1037 (1193)
....+.++++.+.++.+..++.++..++++++..++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 164
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.08 E-value=4.6 Score=43.68 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1013 KAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQ 1054 (1193)
Q Consensus 1013 ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq 1054 (1193)
++...+..-.+|+..|++++...+....+++.+++..+.++.
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445666777777777776666666666666666643
No 165
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.07 E-value=9.4 Score=41.67 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1010 RVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAK 1045 (1193)
Q Consensus 1010 r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k 1045 (1193)
+..++.....++...+..+..-+..++..+.++.+.
T Consensus 24 e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e 59 (207)
T PF05010_consen 24 EEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE 59 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444443333
No 166
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.06 E-value=0.22 Score=54.87 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|-|+|.||||||++++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888764
No 167
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.97 E-value=0.27 Score=52.08 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~ 319 (1193)
++++.|.||.|||++++.+-++|-.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999883
No 168
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.94 E-value=0.45 Score=52.92 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
|-.+.+.+.......+++|.|++|+|||+.+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555555555679999999999999999988887765
No 169
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.93 E-value=0.27 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+..|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 170
>PRK08118 topology modulation protein; Reviewed
Probab=89.77 E-value=0.26 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999887654
No 171
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.74 E-value=15 Score=45.84 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=53.1
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAA 1066 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~e 1066 (1193)
...++..+...+..|..+++.-...+.+++.++..|..++...-.+...|+-++.+++.+ ++.++....+
T Consensus 585 k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E----~e~~kk~~eE 654 (786)
T PF05483_consen 585 KEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEE----LENLKKKHEE 654 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHH
Confidence 344566677777778777777777788899999999999999888888898888888877 4444444433
No 172
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.71 E-value=0.23 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999888764
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=89.67 E-value=0.4 Score=43.76 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.+...+|.|..|||||++...++.++...
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~ 37 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAA 37 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 46667789999999999988888888853
No 174
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.54 E-value=8.2 Score=38.52 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1140 PDVELRKLKMRFETWKKDYKTRLRE 1164 (1193)
Q Consensus 1140 ~~~el~kLk~~lE~~kk~~e~rL~e 1164 (1193)
..++...|+.+++..|.-|+.++.+
T Consensus 94 K~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666655554
No 175
>PF12846 AAA_10: AAA-like domain
Probab=89.54 E-value=0.29 Score=55.50 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
|..++|.|.||||||++++.++.++...+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999998887664
No 176
>PF05729 NACHT: NACHT domain
Probab=89.51 E-value=0.3 Score=50.06 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998888644
No 177
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.49 E-value=53 Score=43.02 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1139 HPDVELRKLKMRFETWKKDYKTRLREAK 1166 (1193)
Q Consensus 1139 ~~~~el~kLk~~lE~~kk~~e~rL~elk 1166 (1193)
....++..|+++.+...+-|+.=+..++
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888877777766444433
No 178
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.49 E-value=6.3 Score=50.91 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1143 ELRKLKMRFETWKKDYKTRLREAKVRLN 1170 (1193)
Q Consensus 1143 el~kLk~~lE~~kk~~e~rL~elk~eL~ 1170 (1193)
++.+.+++++..-|++..+..++..+..
T Consensus 426 ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 426 QLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 179
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.38 E-value=0.3 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999886654
No 180
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.37 E-value=3 Score=45.14 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhchHHHH
Q 001002 1098 SNGSLTAVNHLTKEFEQRRQNFDDDA 1123 (1193)
Q Consensus 1098 l~~~e~~v~~L~kE~e~~~q~~~d~~ 1123 (1193)
..+....+..|..|...+.+.+.+-+
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666666666555443
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.31 E-value=4.5 Score=48.53 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001002 1153 TWKKDYKTRLREAKVRLN 1170 (1193)
Q Consensus 1153 ~~kk~~e~rL~elk~eL~ 1170 (1193)
....+.+.++..++..++
T Consensus 253 ~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 253 ARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444443
No 182
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=89.30 E-value=0.29 Score=53.48 Aligned_cols=26 Identities=46% Similarity=0.590 Sum_probs=20.8
Q ss_pred ceEEE--EcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSII--ISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIi--isGESGaGKTet~k~il~yL~ 318 (1193)
+++|| |+|-||||||+.++.+...|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 55555 489999999999998876665
No 183
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.25 E-value=0.26 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...|+|+|.+|||||++.+.++.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 467999999999999999999888753
No 184
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.14 E-value=0.49 Score=56.12 Aligned_cols=53 Identities=19% Similarity=0.368 Sum_probs=38.0
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+....+ .+|+-..-..++. ..+.+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~---~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLS---LGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHH---cCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4566655443 4676544333332 345689999999999999999999998885
No 185
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.10 E-value=0.4 Score=56.58 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=30.0
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+++.......+.+|+|+|++|+|||.+++.+++.|..
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344445677889999999999999999999988764
No 186
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=89.08 E-value=0.27 Score=55.78 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCChhhHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~i 313 (1193)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999987765
No 187
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.01 E-value=7.8 Score=49.55 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=26.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCC
Q 001002 1097 ESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPAS 1136 (1193)
Q Consensus 1097 el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~ 1136 (1193)
+..+..-.+.+|.+|.+-+..++++.. .|.+.-+.|++.
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee~~-rLk~iae~qleE 160 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEEAA-RLKEIAEKQLEE 160 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334566667888888888888887775 445555555443
No 188
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.98 E-value=0.3 Score=56.35 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...|+|+|.+|||||++++.++.++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999999875
No 189
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.97 E-value=29 Score=40.39 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHH
Q 001002 1100 GSLTAVNHLTKEFEQRRQNFDDDAK 1124 (1193)
Q Consensus 1100 ~~e~~v~~L~kE~e~~~q~~~d~~k 1124 (1193)
...+.++............+.+.++
T Consensus 236 ~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 236 ELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 190
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.93 E-value=0.47 Score=49.95 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
....|+|.|.+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 191
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.89 E-value=0.25 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~ 315 (1193)
+.|+|+|.||||||+..+.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999888844
No 192
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.88 E-value=0.24 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|.|.||||||+.++.+.+.|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999888776
No 193
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.68 E-value=10 Score=44.76 Aligned_cols=37 Identities=24% Similarity=0.128 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhccc
Q 001002 1139 HPDVELRKLKMRFETWKKDYK--------TRLREAKVRLNKLGQS 1175 (1193)
Q Consensus 1139 ~~~~el~kLk~~lE~~kk~~e--------~rL~elk~eL~~L~~~ 1175 (1193)
+-.+|++|-...+...+-..+ +|..+|..++++|++.
T Consensus 374 ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~ 418 (502)
T KOG0982|consen 374 ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccc
Confidence 444556655555555555554 5666777777777663
No 194
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.63 E-value=0.3 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999988887653
No 195
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.62 E-value=0.27 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|+|.|.||||||+.++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999998887653
No 196
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.61 E-value=0.31 Score=57.58 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...-|+|+|++|||||++.+.++.++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998753
No 197
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.60 E-value=40 Score=40.49 Aligned_cols=48 Identities=27% Similarity=0.267 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH
Q 001002 1101 SLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWK 1155 (1193)
Q Consensus 1101 ~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~k 1155 (1193)
..+....|++|++.++|.|-.+-..+..-+ ++.++|-.+||.++++..
T Consensus 476 t~SALdlLkrEKe~~EqefLslqeEfQk~e-------kenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 476 TTSALDLLKREKETREQEFLSLQEEFQKHE-------KENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHH
Confidence 446677888999999888876644432222 346677777877777544
No 198
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.55 E-value=0.59 Score=50.42 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.9
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
...+...|+|+|.||||||+.++.+...|...+
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 345678999999999999999999999886544
No 199
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=88.54 E-value=0.35 Score=51.06 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=36.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEee
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQ 375 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~ 375 (1193)
|+|||++|+|||+..+.++++|...+- ++|=|+.-..-..|.-+|-.|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~-------------------------------~v~Gf~t~evr~~g~r~GF~iv 50 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGL-------------------------------PVGGFYTEEVRENGRRIGFDIV 50 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCG-------------------------------GEEEEEEEEEETTSSEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCC-------------------------------ccceEEeecccCCCceEEEEEE
Confidence 899999999999999999999875321 2333555444466777777777
Q ss_pred ee
Q 001002 376 TF 377 (1193)
Q Consensus 376 ~y 377 (1193)
+.
T Consensus 51 ~l 52 (168)
T PF03266_consen 51 DL 52 (168)
T ss_dssp ET
T ss_pred EC
Confidence 65
No 200
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.50 E-value=5 Score=40.01 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=40.7
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAA---LREQLQQYDAKWLEYEAKMKSMEEMW---QKQMASLQMSLAA 1066 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~---L~e~Le~~e~~~~ele~k~~klee~l---q~~~~eLq~~l~e 1066 (1193)
++.++..++..+..++.....+.+.+..+..+++. ...++..++.+..+++.+...+-+.+ .+.+++|+..+.+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333322 23334444445555555444444433 5667888888888
Q ss_pred HHHHhh
Q 001002 1067 ARKSLA 1072 (1193)
Q Consensus 1067 lk~sL~ 1072 (1193)
+|....
T Consensus 108 lK~myr 113 (120)
T PF12325_consen 108 LKEMYR 113 (120)
T ss_pred HHHHHH
Confidence 776554
No 201
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.48 E-value=0.68 Score=53.14 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.1
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456777799999999999999887777644
No 202
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.47 E-value=0.36 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|.|.|++|.|||..++.++++|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999888875
No 203
>PF14992 TMCO5: TMCO5 family
Probab=88.47 E-value=15 Score=41.71 Aligned_cols=170 Identities=13% Similarity=0.121 Sum_probs=80.2
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEY---EAKMKSMEEMWQKQMASLQMSLAAARK 1069 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~el---e~k~~klee~lq~~~~eLq~~l~elk~ 1069 (1193)
++...+.+-++-..+-.++.+.+..+..++.|+..+...+...+....-. +...+.++.+ ...|+.+.+.+-.
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e----~~~LE~~ne~l~~ 84 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELE----TAKLEKENEHLSK 84 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhh----hHHHhhhhHhhhh
Confidence 34445555566666666666666667777777766655444433322211 1122222211 2333333332222
Q ss_pred HhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHH
Q 001002 1070 SLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKM 1149 (1193)
Q Consensus 1070 sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~ 1149 (1193)
+......+.......+.- .....-.-++..+.++..+.+++..++.++.+..+...+++... .+...+.++++.
T Consensus 85 ~~~elq~k~~e~~~~~~~--e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~----eDq~~~i~klkE 158 (280)
T PF14992_consen 85 SVQELQRKQDEQETNVQC--EDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLC----EDQANEIKKLKE 158 (280)
T ss_pred hhhhhhhhhccccCCCCC--CccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 222211111100010100 00111112444556667777777777766666655444444221 235567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1150 RFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1150 ~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
.+ +.+.+ +-++.-|+.++.+-.+
T Consensus 159 ~L-~rmE~-ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 159 KL-RRMEE-EKEMLLLEKELSKYQM 181 (280)
T ss_pred HH-HHHHH-HHHHHHHHHHHHHHhc
Confidence 77 44444 5566667777766655
No 204
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.45 E-value=0.31 Score=52.33 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|.|+|-||||||+.++.+.+.|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998886653
No 205
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=88.38 E-value=0.37 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|+|+|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998874
No 206
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.28 E-value=0.36 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35688999999999999988777654
No 207
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=88.24 E-value=2.5 Score=51.15 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+|.+.-.|...+..-.+.|.+.|.|.||+|||+..+.|+...
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344455688888777889999999999999999998887654
No 208
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.19 E-value=0.29 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4578999999999999999999888765
No 209
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.19 E-value=0.46 Score=55.64 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.5
Q ss_pred HhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 287 m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+++.+ ..|+|+|.+|||||+..+.++.|+.
T Consensus 156 ~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 156 AVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34444 4599999999999999999888774
No 210
>PRK12377 putative replication protein; Provisional
Probab=88.14 E-value=0.73 Score=51.76 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=33.7
Q ss_pred CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
-|+++.|......... ..++|+|+|.+|+|||..+..|.++|..-+
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455555544333332 357999999999999999999999998643
No 211
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.12 E-value=29 Score=45.19 Aligned_cols=119 Identities=14% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001002 996 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLASDN 1075 (1193)
Q Consensus 996 el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~~e 1075 (1193)
....+...+++++.++..+++++.++-+.+-.|+.+|++++.++..+ ++..++|...-....+...++.......+
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~kl----rqe~~e~l~ea~ra~~yrdeldalre~ae 246 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKL----RQEIEEFLDEAHRADRYRDELDALREQAE 246 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Confidence 45567778888888888888888887777777777777776666533 33334444444444444445544444433
Q ss_pred CCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 001002 1076 TPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIE 1128 (1193)
Q Consensus 1076 ~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E 1128 (1193)
........+ .-++.-..++|.+|++...-+......++..+..
T Consensus 247 r~d~~yker----------lmDs~fykdRveelkedN~vLleekeMLeeQLq~ 289 (1195)
T KOG4643|consen 247 RPDTTYKER----------LMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQK 289 (1195)
T ss_pred cCCCccchh----------hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 332212111 1123334555555555544444444444444433
No 212
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.09 E-value=0.36 Score=57.32 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+--|+|+|.+|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999875
No 213
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.06 E-value=35 Score=43.15 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1015 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSM 1049 (1193)
Q Consensus 1015 e~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~kl 1049 (1193)
+..+..+.++++.|-..++.+.......+....++
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l 315 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTL 315 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33344444444444444444444444444333333
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=4.1 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCHHHHHHhHhhcee
Q 001002 490 EAVTTAAMLMGCSSDELMLALSTHKI 515 (1193)
Q Consensus 490 ~~l~~aa~LLgv~~~~L~~~L~~~~~ 515 (1193)
.+++.+..||.+-+-++..+|..-.+
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~ 166 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPM 166 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCch
Confidence 45777888888888888888766544
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.94 E-value=6.4 Score=46.75 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.7
Q ss_pred eEEeccc
Q 001002 569 INILDIY 575 (1193)
Q Consensus 569 IgILDi~ 575 (1193)
+-||-+|
T Consensus 77 LcilaVP 83 (493)
T KOG0804|consen 77 LCILAVP 83 (493)
T ss_pred EEEEecc
Confidence 3333333
No 216
>PRK06217 hypothetical protein; Validated
Probab=87.87 E-value=0.36 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999886654
No 217
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=87.85 E-value=0.43 Score=50.59 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
-|.|+|.||||||+..+.++..|...+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 678899999999999999999997643
No 218
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.79 E-value=22 Score=40.35 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1138 VHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1138 ~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
..+..+.+.+...+..+..+|..+|.+++.-|+.-..
T Consensus 170 ~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 170 QKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778788888888888888888888876543
No 219
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.79 E-value=0.47 Score=48.16 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~ 320 (1193)
++|+|.+|+|||+.++.++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999988763
No 220
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.74 E-value=4.9 Score=51.83 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=13.4
Q ss_pred CCceEEeecCcc--ccccccchhh
Q 001002 679 GRAFSIRHYAGE--VPYDTNGFLE 700 (1193)
Q Consensus 679 ~~~F~I~HyaG~--V~Y~~~gfl~ 700 (1193)
+..|-+.|-+|- |.- .|+.
T Consensus 378 ~~ryy~~H~~GvH~V~L---~wl~ 398 (717)
T PF10168_consen 378 PDRYYCYHNAGVHSVTL---PWLS 398 (717)
T ss_pred CceEEEEecCccEEEEe---ccHH
Confidence 467999999995 433 3665
No 221
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.70 E-value=0.31 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999988754
No 222
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.62 E-value=28 Score=39.83 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 996 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 996 el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
+...+.+...++..++.++.....++..+..++-++++++.....++.+++
T Consensus 35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl 85 (294)
T COG1340 35 EASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKL 85 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433333
No 223
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=87.62 E-value=0.46 Score=48.57 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999999755
No 224
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=87.56 E-value=0.76 Score=48.47 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=28.7
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
...+.-.|-++|-||||||+.+..+-+.|...|-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3445678999999999999999999999988763
No 225
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=87.51 E-value=0.35 Score=53.67 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=16.6
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001002 295 SIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~i 313 (1193)
-|||||-||||||.+.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987765
No 226
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.51 E-value=0.33 Score=48.91 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999998876654
No 227
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.41 E-value=42 Score=37.90 Aligned_cols=24 Identities=8% Similarity=0.255 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1151 FETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1151 lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
+-+.+.+++.+|..|+.+++.|..
T Consensus 198 ~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 198 FREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777755
No 228
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.35 E-value=23 Score=36.39 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1024 ENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAA 1066 (1193)
Q Consensus 1024 E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~e 1066 (1193)
.+..|+.........+...+....++.+...-.++.|+.++..
T Consensus 95 kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 95 KVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333444444444444444444444433
No 229
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=87.27 E-value=0.42 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
+|+|+|.+|||||+.++.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998877
No 230
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.22 E-value=0.31 Score=54.05 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=22.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
-+++-|.||||||++.|+|-+-+.-.+|
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G 56 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSG 56 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence 4678899999999999999776654333
No 231
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=87.20 E-value=1.2 Score=57.40 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=28.3
Q ss_pred HHHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 283 AYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 283 Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+++..+. ...+.+++|+|.+|.|||.+++.+++-|..
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344443 444566789999999999999999998864
No 232
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.12 E-value=0.34 Score=56.91 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 35599999999999999999988764
No 233
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.12 E-value=0.95 Score=49.75 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..+..++|+|++|+|||+.++.+.+++...+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4567999999999999999999988776543
No 234
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.08 E-value=65 Score=37.25 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=17.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhchHHHHHHHHHh
Q 001002 1097 ESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEI 1129 (1193)
Q Consensus 1097 el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ 1129 (1193)
++......+..|..+++.++...+.+++.+.++
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 344455555555555555555555555444433
No 235
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.05 E-value=95 Score=39.13 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=4.8
Q ss_pred HHHHHHhh
Q 001002 888 RLQKCFRG 895 (1193)
Q Consensus 888 ~IQ~~~Rg 895 (1193)
++|+.+|-
T Consensus 417 Kvqa~~kE 424 (961)
T KOG4673|consen 417 KVQALTKE 424 (961)
T ss_pred HHHHHHHh
Confidence 56666654
No 236
>PRK13764 ATPase; Provisional
Probab=87.01 E-value=0.59 Score=58.58 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..|+|+|.+|||||+++..++.|+..
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45999999999999999999998864
No 237
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=86.89 E-value=0.49 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 238
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.80 E-value=21 Score=36.15 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1148 KMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1148 k~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
+..|+..+.+++.|+.+|...+.-|
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666665544
No 239
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=86.79 E-value=7.4 Score=52.11 Aligned_cols=66 Identities=30% Similarity=0.419 Sum_probs=50.0
Q ss_pred HHHHHHhhhhHhHHhhhhh-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 888 RLQKCFRGYQARSRFRELC-------NGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVR 960 (1193)
Q Consensus 888 ~IQ~~~Rg~laRk~y~~~r-------~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laR 960 (1193)
++|+.+||+..|..+.... -.+.-||+.|||++. |.-... +|.....-++.+|+..||+++|
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~--------~~~~~~~evv~~qs~~R~~lsr 608 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDV--------YLDSAKKEVVKFQSLTRGALSR 608 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHH--------HHHHhhHHHHHHHHHHHHHHHH
Confidence 4499999999988876653 368889999999995 322111 1233357789999999999999
Q ss_pred HHHH
Q 001002 961 KQLK 964 (1193)
Q Consensus 961 r~~~ 964 (1193)
+.+.
T Consensus 609 k~~~ 612 (1401)
T KOG2128|consen 609 KKYS 612 (1401)
T ss_pred hhHH
Confidence 9987
No 240
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.76 E-value=0.69 Score=55.19 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.2
Q ss_pred HHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 284 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+........+.+++|+|.+|+|||.+++.+++.+..
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334445667789999999999999999999988754
No 241
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.75 E-value=0.52 Score=49.01 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|.|||.+|||||+-++.+-.+|-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988876
No 242
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.54 E-value=85 Score=41.62 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1007 LQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 1055 (1193)
Q Consensus 1007 Le~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~ 1055 (1193)
+..++.+.+..+...+.....+.+.++.++.++..++.....++++.++
T Consensus 301 ~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 301 LKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred chhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555554433
No 243
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.45 E-value=0.48 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.5
Q ss_pred EEEcCCCCCChhhHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~y 316 (1193)
|+|+|.+|||||+.++.+.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999887654
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.40 E-value=0.79 Score=56.30 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=39.6
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...||-.... .+|+-..-.+|+. .++.+|+++++|..|.|||++++++-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~---~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFT---LNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHH---cCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3456655443 4776654444432 45678999999999999999999999888654
No 245
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.33 E-value=4.7 Score=52.12 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001002 760 LFKLMHQ 766 (1193)
Q Consensus 760 L~~Lm~~ 766 (1193)
+..|...
T Consensus 158 i~kL~e~ 164 (775)
T PF10174_consen 158 IEKLQEM 164 (775)
T ss_pred HHHHHHH
Confidence 3333333
No 246
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.32 E-value=14 Score=33.44 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1003 ALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1003 ~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
.+..|+.++..+-..+..++.+++.|+++...+...+.++..+..++.++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555666666655566666666666665555555555555555444443
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=86.29 E-value=1.1 Score=49.66 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.6
Q ss_pred CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
+|.. .+..+.+.+ ....+.+++|.|.||+|||+.+..+.+.+...+
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4543 333333333 345667899999999999999999998876643
No 248
>PRK07667 uridine kinase; Provisional
Probab=86.29 E-value=1 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999988875
No 249
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.29 E-value=0.74 Score=54.40 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=45.5
Q ss_pred EecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 247 IAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 247 iavNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
-.+||...++|-. | ...++.++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 102 ~pi~p~~R~~ie~--------------~-~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 102 TPLHPRERLRLET--------------G-SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCCccccccccc--------------c-CcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5667777666421 1 12567788888888788999999999999999999999888765
No 250
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.25 E-value=0.87 Score=52.94 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.6
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+....++|+|++|+|||+.++.+.+++..
T Consensus 32 ~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 32 DSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444457999999999999999999988763
No 251
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.08 E-value=1.3e+02 Score=39.92 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee 1051 (1193)
.......+...+..+...+........+++.++.++...+....+++.+++....
T Consensus 298 ~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 298 ASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred hccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666666666666666666666666666666666666666666665555
No 252
>PRK08727 hypothetical protein; Validated
Probab=86.06 E-value=1.1 Score=49.84 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.6
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....+.|+|+|.||+|||+.+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34557899999999999999999988877643
No 253
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.03 E-value=10 Score=40.99 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=40.3
Q ss_pred cccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 989 MKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1193)
Q Consensus 989 ~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eL 1060 (1193)
........+..+...+..|+.++..++..+.++...+..+..++..+.-+...+++++.+++++..+.++-+
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666666666666666666666666666666666666666655554444
No 254
>PRK04182 cytidylate kinase; Provisional
Probab=86.00 E-value=0.53 Score=49.34 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|+|.+|||||+.++.+.+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999987654
No 255
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.93 E-value=0.67 Score=57.12 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=26.2
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+..+... ..--|+|+|++|||||++...++.++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 44444432 334689999999999999998888774
No 256
>PRK14527 adenylate kinase; Provisional
Probab=85.87 E-value=0.66 Score=49.68 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999877664
No 257
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.85 E-value=0.86 Score=55.62 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=38.0
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..||-.... ..|+...-..++ ...+..+++|++|+.|.|||++++++.++|-.-
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i---~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNAL---KSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 456654433 477765433332 234457899999999999999999999988653
No 258
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.80 E-value=15 Score=39.23 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=25.4
Q ss_pred cCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 991 DVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEA 1044 (1193)
Q Consensus 991 ~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~ 1044 (1193)
..++.++...++.+..+..++.++++...+.+...+-+..+.++.+.+...++.
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~ 67 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEA 67 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444555555555555555555544444444444444444444444443333
No 259
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.72 E-value=0.75 Score=53.21 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+.+..++++|++|+|||+.++.+.+.+
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3446788889999999999999998765
No 260
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=85.70 E-value=9.1 Score=42.88 Aligned_cols=73 Identities=23% Similarity=0.414 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhccCC
Q 001002 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE-----MWQKQMASLQMSLAAARKSLASDNT 1076 (1193)
Q Consensus 1002 ~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee-----~lq~~~~eLq~~l~elk~sL~~~e~ 1076 (1193)
-.+.-|+.++.+.+.++.+.+.|+.+|+.+|..+.+.|.|- +--..|. +..++|..|+.-++-.+.+|...++
T Consensus 68 V~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEE--ECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEE--ECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 34555666666667777777778888888888887777643 2222222 2355677777777777777776543
No 261
>PHA00729 NTP-binding motif containing protein
Probab=85.66 E-value=1.2 Score=49.33 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
|......+.. ..-..|+|+|.+|+|||+.+..+.+.+.
T Consensus 5 ~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333333433 3346899999999999999999988765
No 262
>PRK04040 adenylate kinase; Provisional
Probab=85.65 E-value=0.67 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999988873
No 263
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.57 E-value=0.44 Score=49.91 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+++.+++.|.||+|||+....++...
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999887776543
No 264
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.53 E-value=0.84 Score=57.54 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.4
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.++..|++|++|.+|.|||++++++.+.|-+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45668999999999999999999999998754
No 265
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=85.53 E-value=0.7 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988887754
No 266
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.47 E-value=0.66 Score=49.05 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 267
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.46 E-value=0.64 Score=49.57 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|.|.||||||+-++.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998873
No 268
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.24 E-value=0.7 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999987664
No 269
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.21 E-value=0.83 Score=47.92 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.|+++|++|+|||+++..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999998888654
No 270
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.21 E-value=0.86 Score=55.07 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=33.3
Q ss_pred CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.|+... ....+.++..+...+|||+|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 555543 3556677777777899999999999999999886643
No 271
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.10 E-value=81 Score=36.75 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001002 945 REIICLQSAIRGWLVRKQ 962 (1193)
Q Consensus 945 ~aai~IQs~~R~~laRr~ 962 (1193)
.+-.++++.+|. +.+..
T Consensus 71 ~~k~KLE~LCRE-LQk~N 87 (309)
T PF09728_consen 71 LAKSKLESLCRE-LQKQN 87 (309)
T ss_pred HHHHHHHHHHHH-HHHHH
Confidence 344667777776 44444
No 272
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=0.75 Score=52.57 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=34.6
Q ss_pred CchhhHHHHHHHHHhhc------CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 274 PHVYAIADTAYNEMMGD------GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~------~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
-|+|.-|..|..--... .-|--|++.|+.|.|||..||.+.|.|+-.
T Consensus 152 ~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 152 ERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 56666666665433221 146789999999999999999999998753
No 273
>PRK01156 chromosome segregation protein; Provisional
Probab=84.97 E-value=1.5e+02 Score=39.61 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1142 VELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1142 ~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
+++.+-...+++.+.+++.++.+++..++.|..
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666777777777777776666653
No 274
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=84.90 E-value=0.7 Score=53.84 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987754
No 275
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.77 E-value=8.4 Score=46.39 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1149 MRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1149 ~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
.++|....+....+.|++++|++|++
T Consensus 278 ~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 278 EELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34666677777888899999999877
No 276
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.73 E-value=86 Score=38.84 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCC
Q 001002 1056 QMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPA 1135 (1193)
Q Consensus 1056 ~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e 1135 (1193)
.+..++.+++.++..+..+......... .. .....-.+........+..+++.++.+.+...+.+.+.+... .
T Consensus 276 ~v~~l~~qi~~l~~~l~~~~~~~~~~~~--~~----~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~ 348 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEEEGSAKNGGPE--RG----EIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLL-R 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCcc--cc----cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3556667777777766654322111000 00 000011233444444555555555555554444443333211 1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH
Q 001002 1136 STVHPDVELRKLKMRFETWKKDYKT 1160 (1193)
Q Consensus 1136 ~~~~~~~el~kLk~~lE~~kk~~e~ 1160 (1193)
.......++..|.++.+...+.|+.
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455777777777666666543
No 277
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=4.2 Score=49.07 Aligned_cols=190 Identities=18% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHhcccccccccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 001002 976 AKVKRRSGRKSSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQL----------------------- 1032 (1193)
Q Consensus 976 lr~~~ke~k~l~e~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~L----------------------- 1032 (1193)
..+-.+++..-.+.+-....---.+-+....|+.++++++........|++.+++.+
T Consensus 17 ierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLq 96 (772)
T KOG0999|consen 17 IERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQ 96 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccc-cccCcccchhhhH
Q 001002 1033 ------QQYDAKWLEYEAKMKSMEEMW---QKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIV-PDAGSGRESNGSL 1102 (1193)
Q Consensus 1033 ------e~~e~~~~ele~k~~klee~l---q~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~-~~~~~~~el~~~e 1102 (1193)
+.+-.++-+++..++++..++ +.+.+.|.....+++..-+..+..+..+...+++.- .+.....+-.+++
T Consensus 97 ESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELE 176 (772)
T KOG0999|consen 97 ESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELE 176 (772)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhh--hcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001002 1103 TAVNHLTKEFEQRRQNFDDDAKALIEIK--TTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQS 1175 (1193)
Q Consensus 1103 ~~v~~L~kE~e~~~q~~~d~~k~l~E~k--e~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~~ 1175 (1193)
.....|.+.+..+++.--+-+....|.+ +...+....+.+|...||.=-+ +.+++.|+-|+++
T Consensus 177 EENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAe----------kQlEEALeTlq~E 241 (772)
T KOG0999|consen 177 EENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAE----------KQLEEALETLQQE 241 (772)
T ss_pred HhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhH
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.73 E-value=0.49 Score=53.13 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
.+..++-|-||||+|||++.+.++.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 35577888999999999999999987765544
No 279
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=84.70 E-value=0.98 Score=48.82 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=31.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhh-----hHHHHHhhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGN 343 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----npiLEAFGN 343 (1193)
|.|+|..|||||+.++++-+.+-..-=+.+.+-..++.. ..+.+.||.
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~ 56 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGN 56 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCH
Confidence 789999999999999988765321101233555555542 456778886
No 280
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.68 E-value=1 Score=55.58 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=38.3
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..|+-.... .+|+...-..|+ ...+..+++|++|+.|.|||++++++.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai---~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTI---LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 445544433 366655433333 345668999999999999999999999988653
No 281
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.68 E-value=72 Score=35.60 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 001002 1146 KLKMRFETWKKDY 1158 (1193)
Q Consensus 1146 kLk~~lE~~kk~~ 1158 (1193)
.|...|..|+.++
T Consensus 208 ~le~eL~~~k~~~ 220 (237)
T PF00261_consen 208 RLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555555
No 282
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.66 E-value=0.73 Score=52.34 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=46.4
Q ss_pred cCCccccCCCceEecCCCCcCCCCChHHHHHHhccC--------CCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCCh
Q 001002 235 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV--------MDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGK 306 (1193)
Q Consensus 235 ~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~--------~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGK 306 (1193)
-|--|+..|.-=+-||-|+..--|+- .+|--. ..-|-|+. . +....+--|+++|.+||||
T Consensus 71 ~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~~-------~-~~~~~~GLILVTGpTGSGK 138 (353)
T COG2805 71 LDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIVR-------E-LAESPRGLILVTGPTGSGK 138 (353)
T ss_pred eeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHHH-------H-HHhCCCceEEEeCCCCCcH
Confidence 46678888887788888775432221 011000 01133332 2 1234567899999999999
Q ss_pred hhHHHHHHHHHHH
Q 001002 307 TETAKFAMQYLAA 319 (1193)
Q Consensus 307 Tet~k~il~yL~~ 319 (1193)
|+|.-.++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 283
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.62 E-value=11 Score=48.35 Aligned_cols=65 Identities=11% Similarity=0.134 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccCCC
Q 001002 1013 KAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE---MWQKQMASLQMSLAAARKSLASDNTP 1077 (1193)
Q Consensus 1013 ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee---~lq~~~~eLq~~l~elk~sL~~~e~~ 1077 (1193)
+++......+....++.+...++.....++-.+...... ..+..+.++..++.++..++.....+
T Consensus 414 e~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 414 EAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555555555544444433322222 22344455566666666666654433
No 284
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.57 E-value=0.88 Score=47.35 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
|.|+|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 285
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.49 E-value=0.9 Score=52.02 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
....|+|.|.+|+|||+++..+..|++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999998764
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.46 E-value=2.1 Score=44.65 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=41.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeE
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAK 373 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~ 373 (1193)
=.|.|||..|+|||+.++.+...|..-+- .-|=|+.-.....|+-+|-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~-------------------------------kvgGf~t~EVR~gGkR~GF~ 54 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY-------------------------------KVGGFITPEVREGGKRIGFK 54 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc-------------------------------eeeeEEeeeeecCCeEeeeE
Confidence 35999999999999999999999886542 23446666666788888888
Q ss_pred eeee
Q 001002 374 IQTF 377 (1193)
Q Consensus 374 i~~y 377 (1193)
|.+.
T Consensus 55 Ivdl 58 (179)
T COG1618 55 IVDL 58 (179)
T ss_pred EEEc
Confidence 7764
No 287
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=84.44 E-value=0.73 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999987664
No 288
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.44 E-value=1 Score=39.55 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.2
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~ 315 (1193)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987665543
No 289
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.36 E-value=48 Score=41.10 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=6.6
Q ss_pred cHHHHHhhHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQ 1008 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe 1008 (1193)
+.+++.+..+++.+||
T Consensus 130 LteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLE 145 (861)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 3344444444444443
No 290
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.30 E-value=1.2 Score=55.47 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=39.0
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...||-.... .+|+...-..++. ..+..+++|++|+.|+|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~---~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALE---TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556654433 4777654444432 3456788999999999999999999999875
No 291
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.28 E-value=1.1e+02 Score=37.55 Aligned_cols=6 Identities=50% Similarity=1.177 Sum_probs=2.7
Q ss_pred hccccc
Q 001002 1179 KTRRKW 1184 (1193)
Q Consensus 1179 ~~~~~~ 1184 (1193)
|.|..|
T Consensus 200 K~rG~W 205 (475)
T PRK10361 200 KTQGNW 205 (475)
T ss_pred CcCcch
Confidence 345444
No 292
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=84.26 E-value=0.72 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~ 315 (1193)
...|+|+|+||+||||++=.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877765
No 293
>PRK14974 cell division protein FtsY; Provisional
Probab=84.22 E-value=1.6 Score=51.16 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
+++..|+++|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887643
No 294
>PRK00698 tmk thymidylate kinase; Validated
Probab=84.12 E-value=1.1 Score=48.21 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888643
No 295
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.12 E-value=1.7 Score=50.12 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.5
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.....+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 28 ~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 28 RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444444554444689999999999999999988774
No 296
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.09 E-value=33 Score=42.44 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 001002 1101 SLTAVNHLTKEFEQRRQNFDDDAKALIE 1128 (1193)
Q Consensus 1101 ~e~~v~~L~kE~e~~~q~~~d~~k~l~E 1128 (1193)
.+.....|.++.+..++.++...+.+.+
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444433
No 297
>PRK06761 hypothetical protein; Provisional
Probab=84.06 E-value=0.7 Score=52.75 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998864
No 298
>PRK15453 phosphoribulokinase; Provisional
Probab=84.01 E-value=0.87 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.=-|.|+|-||||||+.++.+.+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999988776544
No 299
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.97 E-value=1.2 Score=55.04 Aligned_cols=112 Identities=28% Similarity=0.347 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccH-----HHHH---HhhhHHHHHhhcCcCC
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGI-----EYEI---LQTNHILEAFGNAKTS 347 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i-----~~~i---l~snpiLEAFGNAkT~ 347 (1193)
||++-+.-.. --+.||.|||.||+|||||+ .+-|||..-|-+.+++ -.++ --|-.+-|-.|----.
T Consensus 357 vf~~R~~ll~---~ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQLLS---VIRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHHHH---HHhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 5555443332 23579999999999999996 4678888766432211 1222 2233444444321000
Q ss_pred CCCCCCcc----ccEEEEEEcCCCceeeeEeeeeecccceeeec-cCCCCc
Q 001002 348 RNDNSSRF----GKLIEIHFSAFGKICGAKIQTFLLEKSRVVQL-AAGERS 393 (1193)
Q Consensus 348 ~N~NSSRf----Gk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~-~~gErn 393 (1193)
.=--|=|| |.-..|-|-.+|.+.--++..-+|+|-.||-. ...||+
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs 481 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS 481 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc
Confidence 00112233 22234445555555555555556666555543 234554
No 300
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.92 E-value=30 Score=35.54 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1019 GQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 1072 (1193)
Q Consensus 1019 ~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~ 1072 (1193)
..+..+..+.+.++.+++....++..-++..+.+..+..+.++..+..+...+.
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444444444444444455555555544443
No 301
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.90 E-value=38 Score=37.51 Aligned_cols=16 Identities=6% Similarity=0.004 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 001002 1056 QMASLQMSLAAARKSL 1071 (1193)
Q Consensus 1056 ~~~eLq~~l~elk~sL 1071 (1193)
.++.|++-+.++++..
T Consensus 106 ikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444444444444433
No 302
>PLN03188 kinesin-12 family protein; Provisional
Probab=83.81 E-value=27 Score=46.94 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhchHHHHHHH-------HHhhhcCCC------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1104 AVNHLTKEFEQRRQNFDDDAKAL-------IEIKTTQPA------STVHPDVELRKLKMRFETWKKDYKTRLREAKVRL 1169 (1193)
Q Consensus 1104 ~v~~L~kE~e~~~q~~~d~~k~l-------~E~ke~q~e------~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL 1169 (1193)
+...|++|...+..++-|.+.++ +.+++.... .....+.|-.|+++++++.|++|+.+|.-++..|
T Consensus 1174 er~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666654443 233322211 1133445777899999999999999998888755
No 303
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.80 E-value=11 Score=47.73 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSME 1050 (1193)
Q Consensus 995 ~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~kle 1050 (1193)
..+..+.+.++.|-..++....+....+.....+...+...+.++.++..++..+.
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333444444445555555444444444444333
No 304
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.77 E-value=1.2e+02 Score=38.35 Aligned_cols=33 Identities=33% Similarity=0.273 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1140 PDVELRKLKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1140 ~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
.+..|++-..+......+++..|.+++..+++.
T Consensus 401 ~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 401 SLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555555556666666666666654
No 305
>PRK08116 hypothetical protein; Validated
Probab=83.76 E-value=1.7 Score=49.47 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=33.5
Q ss_pred CchhhHHHHHHHHHhhc-CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 274 PHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.+.|+.|..-....... ..+..++|.|.+|+|||..+..|.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33455555444433222 345679999999999999999999999865
No 306
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.72 E-value=0.76 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCChhhHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~i 313 (1193)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999887
No 307
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.72 E-value=37 Score=40.76 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Q 001002 1100 GSLTAVNHLTKEFEQRRQNFDDDAKALIEIKT 1131 (1193)
Q Consensus 1100 ~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke 1131 (1193)
...+-+++|..+++..+..+....+...+.|+
T Consensus 491 ~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke 522 (622)
T COG5185 491 NLKHDINELTQILEKLELELSEANSKFELSKE 522 (622)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544444444443
No 308
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.67 E-value=0.83 Score=50.54 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+..++=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45678899999999999999998776654
No 309
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.65 E-value=0.81 Score=46.04 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 310
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.57 E-value=1.8 Score=47.63 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=29.7
Q ss_pred HHHHHHhhcC--CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 282 ~Ay~~m~~~~--~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
.|...+.... .-..++|.|+||+|||+....+..++.....
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 4444444432 2357999999999999999988888776543
No 311
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=83.51 E-value=1.1 Score=50.51 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
...-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999998886543
No 312
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.51 E-value=24 Score=37.82 Aligned_cols=77 Identities=10% Similarity=0.209 Sum_probs=46.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1096 RESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1096 ~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
.++.........+..+++..+..+.+.+.++..--.++-.....-=.++..++..|-+.+..-+..|.+++.++-+.
T Consensus 102 ~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 102 EDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666666677777766666666655543222221111111113566688888888888888888888877654
No 313
>PRK14531 adenylate kinase; Provisional
Probab=83.51 E-value=0.96 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999997775
No 314
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=83.47 E-value=2.9 Score=50.53 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHH
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
++.+.-+|...+..-.+.|-+.|.|.||+|||+..+.++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 4556667777777778899999999999999999877764
No 315
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=83.45 E-value=1.9 Score=44.45 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+=.|+++|+=|||||+-+|-+++.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45667899999999999999999998874
No 316
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=83.39 E-value=0.84 Score=48.51 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.-|||+|.||||||+.++.+++.+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4699999999999999988887553
No 317
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=83.33 E-value=1.2 Score=40.88 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
|+++|..|+|||+++..+...|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999999743
No 318
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.32 E-value=0.64 Score=54.62 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
--.+-+.||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3467888999999999999999999863
No 319
>PRK08356 hypothetical protein; Provisional
Probab=83.22 E-value=0.77 Score=49.41 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il 314 (1193)
--|+|+|.+|||||+.++.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998884
No 320
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.20 E-value=0.94 Score=45.32 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+....|+++|+=|||||+-+|.+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999888877
No 321
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.20 E-value=82 Score=39.92 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 001002 907 NGVITLQSFARGENTRRRHASLG 929 (1193)
Q Consensus 907 ~a~i~IQs~~Rg~~aRr~~~~~r 929 (1193)
+++++.+++.-.-..|++....+
T Consensus 87 k~~~i~~r~~~~~~dr~~~~~~~ 109 (716)
T KOG4593|consen 87 KAQSILARNYEAEVDRKHKLLTR 109 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666554444
No 322
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.10 E-value=0.86 Score=49.85 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.++-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886443
No 323
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.07 E-value=2.6 Score=53.92 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=37.6
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+||-+..+ ..|+-. .+++++. .+..+++||+|..|.|||++++++.+.|-+
T Consensus 8 rKYRPqtFdEVIGQe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHhCCCcHHHHcCcHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 556654433 466644 3444444 455899999999999999999999998865
No 324
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=83.06 E-value=2.1 Score=48.83 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHhh---------cCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 276 VYAIADTAYNEMMG---------DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 276 iyavA~~Ay~~m~~---------~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
++.+...+++.++. .+..+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 44555555555432 23467999999999999999999988887544
No 325
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=83.06 E-value=0.82 Score=49.50 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=30.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcC---CCccHHHHHHhhh-H----HHHHhhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALGG---GSEGIEYEILQTN-H----ILEAFGN 343 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~~---~~~~i~~~il~sn-p----iLEAFGN 343 (1193)
|.|+|.+|||||+.++++-.+ +. +.+.+...++.-+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAFGISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCEEEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999998866543 22 2345666666533 2 6667775
No 326
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.00 E-value=1.2 Score=51.76 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
+..+.|.+.|.+|||||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999988654
No 327
>PRK14528 adenylate kinase; Provisional
Probab=82.99 E-value=1 Score=48.20 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987765
No 328
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.96 E-value=0.85 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
---+.++|.||||||+..|+|+.-
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 345788999999999999998643
No 329
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.95 E-value=1.4 Score=54.07 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=36.2
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..||....+ .+|+- ...+.+.. .+-++++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i~----~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVK----KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456554433 47763 33444444 445688999999999999999999887653
No 330
>PRK10436 hypothetical protein; Provisional
Probab=82.89 E-value=0.85 Score=55.73 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=27.0
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+..+.. ...--|+|+|.+|||||+|...++.++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 3444442 23457899999999999999988888753
No 331
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=82.88 E-value=0.7 Score=56.81 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.-+.+=|-||||||||+++..+|.+|-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45778899999999999999999998754
No 332
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.86 E-value=33 Score=36.72 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 999 ALPTALAELQRRVLKAEATLGQKEEENAALREQLQQ 1034 (1193)
Q Consensus 999 ~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~ 1034 (1193)
..+..+..+++++.+++....+...+...++.....
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333333333333333333
No 333
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=82.85 E-value=0.95 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|++|||||+..+.|+-
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888753
No 334
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.81 E-value=5.4 Score=43.01 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=35.8
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 992 VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1193)
Q Consensus 992 ~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee 1051 (1193)
.+-.++..++..+++++.|+..++..+..++++.+.|..+...++.+|.+++..+...+.
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 344455555566666666666666666666666666666666666666666665554443
No 335
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=82.81 E-value=0.93 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|+|+|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998864
No 336
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=82.80 E-value=85 Score=34.98 Aligned_cols=50 Identities=22% Similarity=0.125 Sum_probs=30.6
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 992 VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLE 1041 (1193)
Q Consensus 992 ~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~e 1041 (1193)
.+...-..+.....+..+|-.-+..++..+++|..++..+++.++.+..-
T Consensus 112 nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~P 161 (330)
T KOG2991|consen 112 NLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQP 161 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 33344444555555555665556666677777777777777777665543
No 337
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=82.78 E-value=0.94 Score=49.25 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999998886543
No 338
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.78 E-value=1.3 Score=54.93 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..|+...-..++. ..+-.++++|+|++|+|||++++.+.+.|-..
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3666554444433 34567899999999999999999999988753
No 339
>PRK03839 putative kinase; Provisional
Probab=82.77 E-value=0.97 Score=47.78 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|.|-+|||||+.++.+-+.|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999887765
No 340
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.77 E-value=0.93 Score=50.56 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 36899999999999999999988764
No 341
>PRK01156 chromosome segregation protein; Provisional
Probab=82.73 E-value=34 Score=45.75 Aligned_cols=22 Identities=9% Similarity=0.546 Sum_probs=11.1
Q ss_pred cCCCccccccCceeeeeecchhhhh
Q 001002 851 FNVLPEMYQVGYTKLYLRSGQLAAL 875 (1193)
Q Consensus 851 ~~i~~~~yqiGkTKVFlr~g~l~~L 875 (1193)
+++++..|. .-||+..|.+..+
T Consensus 122 l~~~~~~f~---~~i~~~Qg~~~~l 143 (895)
T PRK01156 122 LGISKDVFL---NSIFVGQGEMDSL 143 (895)
T ss_pred cCCCHHHhc---eeEEEeccchHHH
Confidence 455443332 4456666665444
No 342
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.73 E-value=0.91 Score=53.14 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 343
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=82.72 E-value=0.73 Score=53.41 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46899999999999999999887764
No 344
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.69 E-value=1.5 Score=46.53 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...-.|+|+|.||||||+.++.+..+|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999988863
No 345
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=82.67 E-value=1.3 Score=46.32 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999887654
No 346
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.59 E-value=1.1 Score=47.38 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|+|.|..|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999875
No 347
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=82.59 E-value=0.71 Score=56.77 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+-.++=|.||||||||+.+|.|+..+.-
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3466778899999999999999887765
No 348
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=82.58 E-value=0.96 Score=49.29 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886543
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.50 E-value=0.79 Score=53.90 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.7
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
-+..|++=|.||||||||+.-..+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3578999999999999999999888877654
No 350
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.46 E-value=26 Score=44.09 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1021 KEEENAALREQLQQYD---AKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLA 1072 (1193)
Q Consensus 1021 le~E~~~L~e~Le~~e---~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~ 1072 (1193)
+.+-..+|.++++++. ......++.+.+++..+++...+|+.....++...+
T Consensus 137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemnee 191 (916)
T KOG0249|consen 137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEE 191 (916)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333444444444433 333445677777777766666666655554444433
No 351
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.46 E-value=0.85 Score=45.60 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 46789999999999999887765433
No 352
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.45 E-value=27 Score=45.64 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001002 1057 MASLQMSLAAARKS 1070 (1193)
Q Consensus 1057 ~~eLq~~l~elk~s 1070 (1193)
+.+|+.++.+++..
T Consensus 290 i~~L~~~l~~l~~~ 303 (754)
T TIGR01005 290 IQRLRERQAELRAT 303 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 353
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.43 E-value=51 Score=41.31 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001002 1154 WKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1154 ~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
....++.+|..++.+|+.+..
T Consensus 338 ~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 338 EVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHhhHHHHHHHHHHHHHHHHh
Confidence 344555555555555555433
No 354
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.40 E-value=12 Score=46.16 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001002 1147 LKMRFETWKKDYKTRLREAK 1166 (1193)
Q Consensus 1147 Lk~~lE~~kk~~e~rL~elk 1166 (1193)
|+...+.|+++++.+-+.-+
T Consensus 615 lr~~~e~~~kr~ee~~r~~k 634 (652)
T COG2433 615 LRRAIEEWKKRFEERERRQK 634 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888877776655443
No 355
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=82.34 E-value=1 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+.|.|+||||||+..|.++-.+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3568899999999999999999876543
No 356
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.31 E-value=23 Score=45.48 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=3.3
Q ss_pred eeeeecc
Q 001002 864 KLYLRSG 870 (1193)
Q Consensus 864 KVFlr~g 870 (1193)
..||-.|
T Consensus 149 ~~FfFDG 155 (650)
T TIGR03185 149 DLFFFDG 155 (650)
T ss_pred HHhcccH
Confidence 3455444
No 357
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.29 E-value=2.8 Score=54.41 Aligned_cols=180 Identities=16% Similarity=0.239 Sum_probs=41.3
Q ss_pred cCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 001002 991 DVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAK---------MKSMEEMWQKQMASLQ 1061 (1193)
Q Consensus 991 ~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k---------~~klee~lq~~~~eLq 1061 (1193)
..+..++..++..+..++..+..++.++.-..+|++-|+..|..+..+....... ...+....+....+++
T Consensus 381 ~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele 460 (722)
T PF05557_consen 381 EQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELE 460 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444555555667777777776665544333221 1122222223233333
Q ss_pred HHHHHHHHHhhccCCCCCCCCccccc---cc-cc----cCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhh-hc
Q 001002 1062 MSLAAARKSLASDNTPGGSTPMKFLN---IV-PD----AGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIK-TT 1132 (1193)
Q Consensus 1062 ~~l~elk~sL~~~e~~~~~~~~k~~~---~~-~~----~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~k-e~ 1132 (1193)
..+..+...+.............+.. .. .. .....++..+..++..|..+...+++....++..+.... .|
T Consensus 461 ~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g 540 (722)
T PF05557_consen 461 AQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQG 540 (722)
T ss_dssp ---------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444444443322211111111110 00 00 111234566777788888888888888777776664311 11
Q ss_pred --------CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1133 --------QPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1133 --------q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
-+....+|..+....++ ..+..++++...|...+..|+
T Consensus 541 ~~~~~~trVL~lr~NP~~~~~~~k~---~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 541 EFNPSKTRVLHLRDNPTSKAEQIKK---STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp --BTTTEEEEEESS-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCceeeeeCCCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 12223556655544332 233344444455555554443
No 358
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.23 E-value=15 Score=32.64 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1004 LAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1193)
Q Consensus 1004 l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eL 1060 (1193)
+..|+.+++.+-....++..||..|.+++.....+...+.+++...-.....++..|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777888888888888888888777777777666555555555544
No 359
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=82.22 E-value=0.97 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 356899999999999999999887654
No 360
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.18 E-value=1.5 Score=54.57 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=37.3
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..|+.+... .+|+-..-..++. ..+-.+++||+|++|.|||+.++.+.+.|-.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544332 4666554344332 3466789999999999999999999998864
No 361
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=82.13 E-value=1.1 Score=48.70 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988886544
No 362
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.13 E-value=1.1 Score=48.85 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886544
No 363
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=82.08 E-value=1.1 Score=51.27 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=25.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
-|+|.|++|+|||+.++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 364
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=82.07 E-value=1.3 Score=53.72 Aligned_cols=64 Identities=30% Similarity=0.478 Sum_probs=39.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC------ccHHHHHHhhhHHHHHhhcCcCC-CCCCCCccccEE
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTS-RNDNSSRFGKLI 359 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~------~~i~~~il~snpiLEAFGNAkT~-~N~NSSRfGk~i 359 (1193)
..|=+|+|+||||+||-..++.|=++ +....+. ..|...++.+ |-||..|-. .-.+.+|-|+|-
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~-S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE 232 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQA-SPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFE 232 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhh-CcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCccee
Confidence 45678999999999998877766333 3222211 1333333332 459988832 335578899986
No 365
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=82.00 E-value=1.4 Score=43.66 Aligned_cols=26 Identities=46% Similarity=0.737 Sum_probs=23.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 366
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.96 E-value=1 Score=54.66 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCce-EEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 281 DTAYNEMMGDGVNQ-SIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 281 ~~Ay~~m~~~~~~Q-sIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...++.+.. ++| =|+++|.+|||||+|..-++++|-.
T Consensus 247 ~~~~~~~~~--~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 247 LARLLRLLN--RPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HHHHHHHHh--CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 345555544 345 4667999999999999999999875
No 367
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=81.92 E-value=0.95 Score=49.72 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356899999999999999999998766
No 368
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.91 E-value=1.2e+02 Score=38.19 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001002 1157 DYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1157 ~~e~rL~elk~eL~~L~~ 1174 (1193)
-++.+|...+.++..|+.
T Consensus 313 sL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 313 SLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555443
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=81.91 E-value=0.99 Score=47.26 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
.--+|.|+|.||+|||+..|.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3468999999999999988776443
No 370
>PRK13768 GTPase; Provisional
Probab=81.86 E-value=1.2 Score=50.05 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998644
No 371
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=81.80 E-value=1.1 Score=48.92 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356899999999999999988886544
No 372
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=81.77 E-value=1.7 Score=54.34 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=26.1
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+....++.|+|+||+|+|||..++.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455689999999999999999999977643
No 373
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.72 E-value=0.76 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886544
No 374
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=81.71 E-value=1.2 Score=48.49 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=31.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhh----hHHHHHhhcC
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT----NHILEAFGNA 344 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s----npiLEAFGNA 344 (1193)
.|.|+|..|||||+.++++.+.+-..--....+-.+++.. .-|.+.||..
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 5889999999999988877654321000123444555443 2466788863
No 375
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=81.69 E-value=0.97 Score=52.95 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356899999999999999999887554
No 376
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.67 E-value=0.7 Score=57.54 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+..+.|.|.|+||||||+..|.++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999999999999999999877653
No 377
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.67 E-value=69 Score=36.21 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001002 1151 FETWKKDYKTRLREA 1165 (1193)
Q Consensus 1151 lE~~kk~~e~rL~el 1165 (1193)
++..+...+.++.+|
T Consensus 129 lq~lk~~qqdEldel 143 (258)
T PF15397_consen 129 LQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 378
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=81.65 E-value=1 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999987765
No 379
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=81.63 E-value=1.7 Score=46.37 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 284 YNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 284 y~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
++.+.. .+-++++++.|++|.|||+.++.+.+.|...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 334443 4567999999999999999999999888753
No 380
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=81.63 E-value=1.1 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~y 316 (1193)
.-|+|+|+||+||||++=-+++-
T Consensus 146 vGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 146 VGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eEEEEECCCCCCHhHHHHHHHHh
Confidence 56999999999999998766654
No 381
>PRK06620 hypothetical protein; Validated
Probab=81.62 E-value=1.8 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il 314 (1193)
.+++|.|++|+|||+.++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~ 65 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQ 65 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 789999999999998888643
No 382
>PLN03025 replication factor C subunit; Provisional
Probab=81.61 E-value=1.9 Score=50.26 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=28.9
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.+...+.-..++++|++|+|||++++.+.+.|.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555566556799999999999999999988874
No 383
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=81.57 E-value=33 Score=37.24 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhchHHHHHHH
Q 001002 1097 ESNGSLTAVNHLTKEFEQRRQNFDDDAKAL 1126 (1193)
Q Consensus 1097 el~~~e~~v~~L~kE~e~~~q~~~d~~k~l 1126 (1193)
.+..+...+..|..|+..+++..++....+
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456677788888888888888777665444
No 384
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=81.50 E-value=1.1 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|++|||||+..+.++-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4688999999999999998888643
No 385
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=81.49 E-value=1.7 Score=50.06 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.1
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+.+=.|+|+|.||||||+.+..+..+|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567799999999999999999999888
No 386
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=81.44 E-value=1.9 Score=50.96 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 281 DTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 281 ~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...+..+.. .+-+++++|+|+.|.|||+.++.+.++|..
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 345555544 456899999999999999999999998876
No 387
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=81.43 E-value=1.1 Score=48.56 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.+.-++
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888886543
No 388
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=81.42 E-value=1.1 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 457889999999999999999987554
No 389
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.34 E-value=1.1 Score=49.60 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|++|||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999988886543
No 390
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.28 E-value=1.2 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886543
No 391
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.27 E-value=2.1 Score=45.54 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...+.|+|.|.+|.|||..+..+.+.++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999888873
No 392
>PLN02318 phosphoribulokinase/uridine kinase
Probab=81.25 E-value=1.7 Score=54.17 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=31.0
Q ss_pred CchhhHHHHHHHHHhhcC-CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 274 PHVYAIADTAYNEMMGDG-VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~-~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
-|=|-++-+|-+-+.... ..--|-|.|.||||||+.++.|...+
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 355666777776665432 23466789999999999999886543
No 393
>PRK02496 adk adenylate kinase; Provisional
Probab=81.24 E-value=1.2 Score=47.25 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|.|.+|||||+.++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 394
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=81.12 E-value=1.4 Score=47.16 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=31.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHH-HHhcCCCccHHHHHHhhh-----HHHHHhh
Q 001002 296 IIISGESGAGKTETAKFAMQYL-AALGGGSEGIEYEILQTN-----HILEAFG 342 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL-~~~~~~~~~i~~~il~sn-----piLEAFG 342 (1193)
|.|+|-.|||||+.++++-+.. ..+- ..+.+..+++..+ .|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i-~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI-DADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE-eCCHHHHHHHhcCChHHHHHHHHHC
Confidence 7899999999999988776543 1111 1235666666643 3788888
No 395
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.01 E-value=1.7e+02 Score=37.13 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=37.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW 1053 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~l 1053 (1193)
+.-++.+-..++..+++...+..+.++++-.++++++.++.+...++...+++....
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666677777777777777777777777777666555544
No 396
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.98 E-value=1.1 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887665
No 397
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.94 E-value=1.3 Score=46.62 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
+++|+|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888877776544
No 398
>PRK09087 hypothetical protein; Validated
Probab=80.94 E-value=1.9 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
.+..++|.|+||+|||+.+..+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 466799999999999988886654
No 399
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=80.85 E-value=1.1 Score=52.28 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+-|.|+||||||+..+.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567889999999999999999977553
No 400
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.79 E-value=26 Score=36.67 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1019 GQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARK 1069 (1193)
Q Consensus 1019 ~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~ 1069 (1193)
..+..++..|..+.+.........+.++..+++.|.....+|..+++.++.
T Consensus 53 ~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~ 103 (158)
T PF09744_consen 53 ELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEE 103 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444555554444444444444333
No 401
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.76 E-value=34 Score=44.00 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1011 VLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARK 1069 (1193)
Q Consensus 1011 ~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~ 1069 (1193)
+.+++.++.+.+.|+..|...|++.+.+.......+..+.+. +..|...+..+..
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ek----i~~L~e~l~aL~~ 321 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEK----INRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Confidence 334455555555555556555555555555544444444333 4444444444333
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.74 E-value=1.4 Score=47.69 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
++.|++.|.+|+|||+|+-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999988887777755
No 403
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=80.71 E-value=1.1 Score=48.56 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.+.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998887543
No 404
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.69 E-value=17 Score=39.77 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1024 ENAALREQLQQYDAKWLEYEAKMKSM 1049 (1193)
Q Consensus 1024 E~~~L~e~Le~~e~~~~ele~k~~kl 1049 (1193)
+..++++.+++.+....+++++.+++
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 405
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=80.67 E-value=1.9 Score=54.14 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=38.5
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...||..... .+|+-. .+..+. ..+..+++|++|+.|.|||+.++.+.+.|.+.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~----~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKK----ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3556654432 466543 333343 34678999999999999999999999998754
No 406
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=80.66 E-value=1.3 Score=48.46 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..+.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999998887753
No 407
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.62 E-value=22 Score=40.56 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHH--HH-----hhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001002 1100 GSLTAVNHLTKEFEQRRQNFDDDAKAL--IE-----IKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKL 1172 (1193)
Q Consensus 1100 ~~e~~v~~L~kE~e~~~q~~~d~~k~l--~E-----~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L 1172 (1193)
..+.++.+|..|.--++|+++|+-+.. .| ++.+-.+...+--.+..+-..-+|+.+|++-....-|++.+-+.
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQY 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456667777777777888888774332 12 11111111111112333333446667777777777777777777
Q ss_pred ccc
Q 001002 1173 GQS 1175 (1193)
Q Consensus 1173 ~~~ 1175 (1193)
+.+
T Consensus 298 EkE 300 (305)
T PF14915_consen 298 EKE 300 (305)
T ss_pred HHH
Confidence 663
No 408
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.61 E-value=1.9 Score=54.54 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=38.0
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+.|+-...+ ..|+...-..++. ..+..+++||+|++|.|||+.++.+.++|-..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445544332 4666554344432 34568999999999999999999999998643
No 409
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.55 E-value=1.8 Score=48.46 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.+.++++|.+|+|||+.+..|..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998754
No 410
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=80.54 E-value=2.5 Score=53.13 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
|-|.++-.++|.. +.++.-.|+|+|.||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 6677766666644 3445568999999999999999999888865
No 411
>PLN02796 D-glycerate 3-kinase
Probab=80.51 E-value=1.2 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~ 318 (1193)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 478899999999999998877665
No 412
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=80.49 E-value=1.9 Score=52.03 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCChHHHHHHhccC-CC-CCchhhHHHHHHHHHhhcC-----------CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 257 IYGNKFITAYRQKV-MD-SPHVYAIADTAYNEMMGDG-----------VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 257 ~y~~~~~~~y~~~~-~~-~PHiyavA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.++..+..|-... .. .+-+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666665554331 11 2333344445554332221 24689999999999999999886554
No 413
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.44 E-value=1.2 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999888887653
No 414
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.42 E-value=1.2 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.--|+|+|..|||||+|...+++++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 35688999999999999988888874
No 415
>PRK10646 ADP-binding protein; Provisional
Probab=80.38 E-value=2.9 Score=43.52 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.-.|++.|+-|||||+-+|.+++.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34788999999999999999988873
No 416
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.32 E-value=1.2e+02 Score=35.11 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001002 1054 QKQMASLQMSLAAARKSLAS 1073 (1193)
Q Consensus 1054 q~~~~eLq~~l~elk~sL~~ 1073 (1193)
++.+..|+.+..+++..|..
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~ 131 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445444443
No 417
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=80.32 E-value=1.3 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.|.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998887643
No 418
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.32 E-value=44 Score=42.49 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhh--
Q 001002 1053 WQKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIK-- 1130 (1193)
Q Consensus 1053 lq~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~k-- 1130 (1193)
-..+..++..+++.+...+...... ...+. .....-.++++.....+++.|.+|...+.+++.....++...-
T Consensus 122 R~~ef~el~~qie~l~~~l~g~~~~----~~~~~-~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~ 196 (660)
T KOG4302|consen 122 RRAEFKELYHQIEKLCEELGGPEDL----PSFLI-ADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSV 196 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccC----Ccccc-cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666654111 11000 0011122367888999999999999998888887765553322
Q ss_pred ------------h------c---CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1131 ------------T------T---QPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1131 ------------e------~---q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
+ . .--...+..+-|.+..+.|+..+++.-.+++++...+..|=+
T Consensus 197 Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn 261 (660)
T KOG4302|consen 197 LGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN 261 (660)
T ss_pred hCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 011112333456667788888888888888888888887744
No 419
>PRK00023 cmk cytidylate kinase; Provisional
Probab=80.31 E-value=1.3 Score=48.91 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999988874
No 420
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.25 E-value=1.3 Score=49.05 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999998886544
No 421
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.19 E-value=30 Score=39.88 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=44.5
Q ss_pred ccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 990 KDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1193)
Q Consensus 990 ~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eL 1060 (1193)
+....++....++.+..|..++.+++..+...-.|+++|...|...+..-..+..++..+++...+-+.-|
T Consensus 222 La~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 222 LARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666666666666666666667777777777777776666666666666666554444443
No 422
>PRK09099 type III secretion system ATPase; Provisional
Probab=80.18 E-value=4.8 Score=48.93 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHH
Q 001002 277 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 277 yavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
+...-.+...++.-.+.|.+.|.|.||+|||+..+.+..
T Consensus 147 l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~ 185 (441)
T PRK09099 147 LPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFAR 185 (441)
T ss_pred cCCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 334445666676667899999999999999998776654
No 423
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=80.14 E-value=1.5 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+.|+|+|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999987763
No 424
>PRK04195 replication factor C large subunit; Provisional
Probab=80.12 E-value=1.7 Score=53.72 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 346799999999999999999887765
No 425
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=80.05 E-value=2.1 Score=48.46 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.0
Q ss_pred CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
|++=.+-+++...+.. +..|+|.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5555566666655543 578999999999999999887653
No 426
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=80.05 E-value=1.4 Score=47.76 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888643
No 427
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=80.05 E-value=1.3 Score=49.07 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456899999999999999988876443
No 428
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=79.96 E-value=1.2 Score=48.22 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=26.5
Q ss_pred HHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 285 ~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+..+.+++|+|.|..|+|||...+.+++.+
T Consensus 12 ~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 12 KELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344455668999999999999999999998877
No 429
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.96 E-value=1.4 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.. +.+.|.|++|||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999988886443
No 430
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=79.90 E-value=2.2 Score=54.22 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=27.7
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.......++.|+|.|++|+|||+.++.+..+...
T Consensus 168 ~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 168 AKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3344566889999999999999999999877643
No 431
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.87 E-value=1.4 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+.+.|.|++|||||+..+.|.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567889999999999999998853
No 432
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=79.86 E-value=1.3 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4468999999999999999888855
No 433
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=79.84 E-value=1.1 Score=56.64 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...|.+.|.|+||||||+..|.++.++.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46799999999999999999999887654
No 434
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.78 E-value=2.1 Score=53.13 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=39.1
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...|+-+... .+||-. +..++. ..+.+++++++|..|.|||++++++.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567655443 477654 344444 4567899999999999999999999998864
No 435
>PF13479 AAA_24: AAA domain
Probab=79.78 E-value=1.2 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=18.5
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~i 313 (1193)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999766544
No 436
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=79.75 E-value=1.2 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.2
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~i 313 (1193)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999865544
No 437
>PRK14530 adenylate kinase; Provisional
Probab=79.74 E-value=1.4 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~ 318 (1193)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999987763
No 438
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.73 E-value=44 Score=46.75 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH------hhHhHhhcchHHHHHHHhcccccccccCcHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
Q 001002 951 QSAIRGWLVRKQLK------MHKLKQSNPVNAKVKRRSGRKSSDMKDVPQEQVQALPT--ALAELQRRVLKAEATLGQKE 1022 (1193)
Q Consensus 951 Qs~~R~~laRr~~~------l~~~~~~~q~~lr~~~ke~k~l~e~~~~l~~el~~l~~--~l~eLe~r~~ele~~l~~le 1022 (1193)
.+.+=|..+|+.++ +......+...+.....+...+.+.+..+..+...+.. .+...-..+......+....
T Consensus 727 ~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~ 806 (1353)
T TIGR02680 727 AAEYIGAAARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAE 806 (1353)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCcccc
Q 001002 1023 EENAALREQLQQYDAKWLEYEAKMKSMEEMW-----QKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGSGRE 1097 (1193)
Q Consensus 1023 ~E~~~L~e~Le~~e~~~~ele~k~~klee~l-----q~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~~~e 1097 (1193)
.++..++++++.....+.+.+..+...-..+ ......+...+.+....+...... ..+
T Consensus 807 ~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~-----------------~~~ 869 (1353)
T TIGR02680 807 RELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVA-----------------VRE 869 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q ss_pred hhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1098 SNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1098 l~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
+.............++..++.+++....+.+..+.. .....++..+...++....+++.+|.+++.+|..+.
T Consensus 870 L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~----~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~ 941 (1353)
T TIGR02680 870 LRHAATRAAEQRARAARAESDAREAAEDAAEARAEA----EEASLRLRTLEESVGAMVDEIRARLAETRAALASGG 941 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.71 E-value=27 Score=30.66 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1024 ENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1024 E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
.+-.++.+|++.+.++.+++.++..++++
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444444444443
No 440
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=79.64 E-value=1.4 Score=48.67 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999887554
No 441
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=79.64 E-value=1.3 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998888543
No 442
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.63 E-value=1.5 Score=46.00 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+.|.|++|||||+..+.++-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578899999999999999988876543
No 443
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=79.63 E-value=1.4 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.|.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999888853
No 444
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.61 E-value=1.4 Score=47.66 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|++|||||+..+.+.-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678899999999999999888643
No 445
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=79.55 E-value=1.4 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999888754
No 446
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.55 E-value=1.4 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..+.++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999999999999888764
No 447
>PRK13695 putative NTPase; Provisional
Probab=79.55 E-value=1.6 Score=45.94 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~ 319 (1193)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999887765
No 448
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=79.52 E-value=1.4 Score=47.69 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888886443
No 449
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.49 E-value=1.4 Score=47.60 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999998888543
No 450
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=79.48 E-value=1.3 Score=56.97 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..|.|-|.|+||||||+.+|+++.++.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3478999999999999999999876654
No 451
>PRK13947 shikimate kinase; Provisional
Probab=79.48 E-value=1.6 Score=45.59 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999887655
No 452
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=79.47 E-value=1.8 Score=52.64 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHhhc-----CCceEEEEcCCCCCChhhHHH
Q 001002 275 HVYAIADTAYNEMMGD-----GVNQSIIISGESGAGKTETAK 311 (1193)
Q Consensus 275 HiyavA~~Ay~~m~~~-----~~~QsIiisGESGaGKTet~k 311 (1193)
||=.-.+..+...+.+ ...+.|.|+|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3333445555555544 577999999999999999988
No 453
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=79.31 E-value=1.7 Score=46.31 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..-|+|.|-.|||||+-++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356999999999999999999888765
No 454
>PRK06315 type III secretion system ATPase; Provisional
Probab=79.28 E-value=3.4 Score=50.17 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 277 YAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 277 yavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.+.-+|...++.-++.|.+.|.|+||+|||+..+.++.++
T Consensus 148 l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 148 LSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred ccceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 34444566666667889999999999999999999998766
No 455
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=79.24 E-value=1.5 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.++|.|.||||||...+.++..|+..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 59999999999999999988887763
No 456
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.24 E-value=1.5 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~i 313 (1193)
+-.-++|.|.||||||+..+.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999876654
No 457
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.23 E-value=1.4e+02 Score=39.93 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=19.6
Q ss_pred hhcCCceEEEEcCCCCCChhhHH
Q 001002 288 MGDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~ 310 (1193)
+-.+-|-+|+..|.+|+|||.|+
T Consensus 124 Vl~GyNCTIFAYGQTGTGKTyTM 146 (1041)
T KOG0243|consen 124 VLEGYNCTIFAYGQTGTGKTYTM 146 (1041)
T ss_pred HhccCCceEEEecCCCCCceeee
Confidence 34677999999999999999773
No 458
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=79.20 E-value=7.6 Score=47.32 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
++.+.-++...++.-.+.|.+.|.|.||+|||+..+.++.+.
T Consensus 141 ~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 455667788888777899999999999999999888776543
No 459
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=79.14 E-value=1.5 Score=50.65 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
.-.|+|+|+||+||||++=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 368999999999999998877765
No 460
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.12 E-value=1.5 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877543
No 461
>PRK10908 cell division protein FtsE; Provisional
Probab=79.11 E-value=1.5 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998887543
No 462
>PF15294 Leu_zip: Leucine zipper
Probab=79.07 E-value=25 Score=39.93 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=54.5
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDA----------------KWLEYEAKMKSMEEMWQKQ 1056 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~----------------~~~ele~k~~klee~lq~~ 1056 (1193)
+..++..++++...|+.|+..++......-+|..+++.+|.++.. ...++|.++..+..++++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 556666677777777777777666666666666666666666655 3345677777777777777
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001002 1057 MASLQMSLAAARKSLAS 1073 (1193)
Q Consensus 1057 ~~eLq~~l~elk~sL~~ 1073 (1193)
+.+...+.+.++..|..
T Consensus 210 ~~d~~~~~k~L~e~L~~ 226 (278)
T PF15294_consen 210 LQDKESQQKALEETLQS 226 (278)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666666665
No 463
>PF13173 AAA_14: AAA domain
Probab=79.05 E-value=1.8 Score=43.23 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
++.++|.|.-|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998776
No 464
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=79.01 E-value=1.5 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999998887643
No 465
>PRK06526 transposase; Provisional
Probab=78.89 E-value=1.7 Score=48.95 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..+.|+|.|.+|+|||..+..|...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 456799999999999999999988877643
No 466
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=78.88 E-value=1.5 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..+.|+-
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999999888853
No 467
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=78.82 E-value=1.7 Score=47.89 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~ 318 (1193)
.|.|.|.||||||+.++.+...|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987554
No 468
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=78.82 E-value=1.5 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..|.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999998888643
No 469
>PLN02348 phosphoribulokinase
Probab=78.80 E-value=2.5 Score=50.25 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+.--|-|+|-||||||+.++.|.+.|-.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445558999999999999999888753
No 470
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=78.77 E-value=1 Score=49.51 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999886544
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.74 E-value=1.6 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il 314 (1193)
...-+.|.|+||||||+..+.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999998774
No 472
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=78.72 E-value=1.6 Score=48.04 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356899999999999999988886543
No 473
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=78.67 E-value=3.4 Score=48.43 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=28.3
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.+..-.|-|+|.+|||||+.+..+..+|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 56788999999999999999999999998643
No 474
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=78.63 E-value=1.6 Score=48.07 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988888643
No 475
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.63 E-value=0.97 Score=45.76 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+..|+|+||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 45778999999999999887755443
No 476
>PRK05642 DNA replication initiation factor; Validated
Probab=78.61 E-value=3.2 Score=46.12 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
-.++|.|.+|+|||+.+..+..++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999888877643
No 477
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=78.60 E-value=1.6 Score=47.68 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|++|||||+..+.|.-.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888543
No 478
>PRK05922 type III secretion system ATPase; Validated
Probab=78.58 E-value=5 Score=48.63 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 275 HiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.++.+.-+|...+..-.+.|-|.|.|.+|+|||+..+.+..+.
T Consensus 139 e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 139 EIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred eecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 3456666777778788899999999999999999988887654
No 479
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=78.57 E-value=1.6 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..+.|.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999998888643
No 480
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.56 E-value=1.6 Score=49.59 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999988875443
No 481
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.56 E-value=1.6 Score=48.22 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.5
Q ss_pred CCceEEEEcCCCCCChhhHHH
Q 001002 291 GVNQSIIISGESGAGKTETAK 311 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k 311 (1193)
...+.+.|.|+||||||+...
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 467899999999999999974
No 482
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=78.45 E-value=1.6 Score=47.29 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|++|||||+..+.++-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999998887543
No 483
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=78.45 E-value=2.5 Score=49.07 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..+.+.-+.....-..+..|+|+|-+|||||+.++.+.+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 444444444444445677899999999999999999987654
No 484
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=78.44 E-value=1.6 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|+||||||+..+.++-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999887544
No 485
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=78.41 E-value=2.6 Score=53.58 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=39.0
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...|+-+... .+|+... ...++. .+-.+++||+|+.|.|||++++.+.+.|-..
T Consensus 7 a~KyRP~~f~divGQe~vv~~----L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTA----LANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3556654433 4777653 333333 4568899999999999999999999988763
No 486
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=78.40 E-value=1.7 Score=46.85 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=21.5
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
....+..|||.|.+|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346789999999999999998887766553
No 487
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.37 E-value=2.6 Score=50.69 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHhhc-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 283 AYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 283 Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+++++.. +.++++|++|+.|.|||+.++.+-++|-.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555554 56899999999999999999999988865
No 488
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=78.34 E-value=1.6 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|++|||||+..+.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35688999999999999999988654
No 489
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=78.33 E-value=1.7 Score=49.40 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 279 IADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 279 vA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.++.....+...+.-++++|.|.+|||||+..+.+...+..
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 34555555555555589999999999999999988766653
No 490
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=78.30 E-value=2.6 Score=49.72 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.4
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+..-..|+|+|++|+|||+.++.+-+||...
T Consensus 35 ~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 35 DPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3344689999999999999999999998753
No 491
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=78.26 E-value=1.6 Score=47.11 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=31.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhh-----hHHHHHhhcC
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 344 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----npiLEAFGNA 344 (1193)
.-|.|+|-+|||||+.++++-+|=..+ -..+.+-.+++.. .-|.+.||..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~g~~~-i~~D~~~~~~~~~~~~~~~~i~~~fg~~ 57 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAELGAPV-IDADAIAHEVVEPGGPALQAIVEAFGPE 57 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEE-EEecHHHHHHhhccHHHHHHHHHHhCHH
Confidence 469999999999999998877631110 0123455555532 3466778863
No 492
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.16 E-value=2.5 Score=55.05 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...||-.... ..||-..-.+++. ..+-.+++||+|+.|.|||++++++.+.|
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~---~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALT---QQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH---hCCCCeEEEEECCCCCCHHHHHHHHHHhc
No 493
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=78.10 E-value=1.6 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il 314 (1193)
...+.+.|.|.+|||||+..+.+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 494
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.08 E-value=1.7 Score=46.61 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il 314 (1193)
...+.+.|.|++|||||+..+.++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIA 47 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 495
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=78.07 E-value=2.2 Score=53.00 Aligned_cols=40 Identities=38% Similarity=0.601 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
||+..+.-...+.+ ||.+||.||+|||||+ .|-|||+..|
T Consensus 52 I~~~r~~il~~ve~---nqvlIviGeTGsGKST---QipQyL~eaG 91 (674)
T KOG0922|consen 52 IYKYRDQILYAVED---NQVLIVIGETGSGKST---QIPQYLAEAG 91 (674)
T ss_pred HHHHHHHHHHHHHH---CCEEEEEcCCCCCccc---cHhHHHHhcc
No 496
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=78.07 E-value=4.5 Score=49.23 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred CcEEEEEcCCC----CEEEEEEEeecCCeEEEEe--------------cCCcEEEEeCCC-----cccCCCCccCCcCcc
Q 001002 158 KLRVWCRLEDG----KWESGMIQSTSGDEAFVLL--------------SNGNVVKVSTGE-----LLPANPDILEGVDDL 214 (1193)
Q Consensus 158 ~~~vw~~~~~~----~~~~~~v~~~~~~~~~v~~--------------~~g~~~~v~~~~-----~~~~np~~~~~~~Dl 214 (1193)
+..|++...++ . ..|+|+...++.+.+.+ ..|..+.|+..+ +...-...+|+-..+
T Consensus 49 ge~c~i~~~~~~~~~~-~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRV~d~~G~plD~~~~~ 127 (451)
T PRK05688 49 GSRCLVINDDSYHPVQ-VEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPM 127 (451)
T ss_pred CCEEEEecCCCccccc-eEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCccEEEecccccCCEEeccCceecCCCCC
Q ss_pred ccCC--CCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCC
Q 001002 215 IQLS--YLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGV 292 (1193)
Q Consensus 215 ~~L~--~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~ 292 (1193)
..-. .++.+ ++||....|+ -.++.+.-.|...++.-++
T Consensus 128 ~~~~~~~i~~~------------------------~~~p~~R~~i----------------~~~l~TGi~aID~l~~I~~ 167 (451)
T PRK05688 128 KAEDWVPMDGP------------------------TINPLNRHPI----------------SEPLDVGIRSINGLLTVGR 167 (451)
T ss_pred CccceecccCC------------------------CCCHHHcccc----------------cCCcccceeeecceEEecC
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
.|.+.|.|.||+|||+..+.+..+
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
No 497
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.07 E-value=1.7 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il 314 (1193)
...+.+.|.|++|||||+..++|.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 498
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=78.05 E-value=1.8 Score=46.94 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHhh-----hHHHHHhhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGN 343 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~s-----npiLEAFGN 343 (1193)
|.|+|.+|||||+.++++..+=+.+=... .+...++.. ..|.+.||.
T Consensus 4 igitG~igsGKst~~~~l~~~g~~vid~D-~i~~~~~~~~~~~~~~l~~~fg~ 55 (200)
T PRK14734 4 IGLTGGIGSGKSTVADLLSSEGFLIVDAD-QVARDIVEPGQPALAELAEAFGD 55 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEeCc-HHHHHHHhcCCHHHHHHHHHhCc
No 499
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.98 E-value=20 Score=44.42 Aligned_cols=94 Identities=11% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001002 996 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLASDN 1075 (1193)
Q Consensus 996 el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~~e 1075 (1193)
+.......+.+++..++.++.+...|+.++.+++..++.++.++..+..++. .+......++.++..+..|+..|....
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHh
Q 001002 1076 TPGGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQ 1117 (1193)
Q Consensus 1076 ~~~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q 1117 (1193)
+. +.+|...++++++
T Consensus 495 ~~---------------------------ve~L~~~l~~l~k 509 (652)
T COG2433 495 KR---------------------------VEELERKLAELRK 509 (652)
T ss_pred HH---------------------------HHHHHHHHHHHHH
No 500
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.94 E-value=2.6 Score=52.96 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHhccCCC----CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|+....+ .+|+...=..++.. .+..+++|++|+.|.|||++++.+.+.|
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHh
Done!