Query 001002
Match_columns 1193
No_of_seqs 493 out of 2406
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 6E-215 2E-219 2052.6 86.4 806 157-964 9-859 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 2E-207 7E-212 1925.8 79.2 787 136-931 11-830 (837)
3 1i84_S Smooth muscle myosin he 100.0 8E-208 3E-212 2029.0 74.9 795 134-931 8-843 (1184)
4 1w7j_A Myosin VA; motor protei 100.0 2E-202 8E-207 1872.0 69.4 751 157-909 9-794 (795)
5 4anj_A Unconventional myosin-V 100.0 1E-201 4E-206 1902.9 67.7 788 157-964 3-844 (1052)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 4E-200 1E-204 1843.2 64.9 745 132-883 10-781 (783)
7 2ycu_A Non muscle myosin 2C, a 100.0 7E-198 2E-202 1881.4 65.1 769 158-928 8-809 (995)
8 1g8x_A Myosin II heavy chain f 100.0 8E-196 3E-200 1859.2 83.1 765 133-927 10-793 (1010)
9 1w9i_A Myosin II heavy chain; 100.0 3E-197 9E-202 1812.1 60.9 737 132-886 9-765 (770)
10 2v26_A Myosin VI; calmodulin-b 100.0 5E-196 2E-200 1815.3 64.6 731 160-897 2-784 (784)
11 1lkx_A Myosin IE heavy chain; 100.0 3E-189 1E-193 1732.3 56.1 663 208-883 7-696 (697)
12 2dfs_A Myosin-5A; myosin-V, in 99.7 2.2E-16 7.7E-21 204.7 24.9 30 1100-1129 1020-1049(1080)
13 1i84_S Smooth muscle myosin he 99.3 5.8E-12 2E-16 166.8 14.5 56 897-964 783-838 (1184)
14 2ix7_C Myosin-5A; contractIle 98.9 9.8E-10 3.4E-14 93.3 6.7 50 882-931 4-53 (58)
15 1n2d_C IQ2 and IQ3 motifs from 98.7 2.5E-08 8.5E-13 81.2 6.0 41 885-925 5-47 (48)
16 1n2d_C IQ2 and IQ3 motifs from 98.6 5.1E-08 1.7E-12 79.4 6.6 46 905-963 2-47 (48)
17 2ix7_C Myosin-5A; contractIle 98.5 2E-07 7E-12 79.0 8.0 49 904-967 3-52 (58)
18 1wdc_A Scallop myosin; calcium 98.3 6.8E-07 2.3E-11 77.3 5.7 52 880-931 2-57 (64)
19 2bl0_A Major plasmodial myosin 98.2 9.8E-07 3.4E-11 76.1 5.2 48 884-931 5-55 (63)
20 1wdc_A Scallop myosin; calcium 97.3 0.00038 1.3E-08 60.0 6.0 49 904-964 4-52 (64)
21 2bl0_A Major plasmodial myosin 97.2 0.0003 1E-08 60.5 4.7 48 905-964 3-50 (63)
22 3gn4_A Myosin-VI; unconvention 96.9 0.0041 1.4E-07 61.7 10.1 22 943-964 44-65 (148)
23 1kk8_A Myosin heavy chain, str 96.9 0.0013 4.4E-08 83.4 8.1 56 897-964 770-825 (837)
24 3na7_A HP0958; flagellar bioge 96.7 0.062 2.1E-06 59.0 19.1 73 997-1073 13-85 (256)
25 2fxo_A Myosin heavy chain, car 96.4 0.039 1.3E-06 54.2 13.1 84 985-1072 45-128 (129)
26 3na7_A HP0958; flagellar bioge 95.7 0.28 9.5E-06 53.8 17.8 12 1057-1068 92-103 (256)
27 3vkg_A Dynein heavy chain, cyt 95.4 0.27 9.1E-06 70.4 19.8 28 293-320 906-933 (3245)
28 1jbk_A CLPB protein; beta barr 94.9 0.014 4.6E-07 59.3 3.6 32 288-319 38-69 (195)
29 2fxo_A Myosin heavy chain, car 94.6 1.7 5.7E-05 42.5 17.5 113 1015-1173 12-124 (129)
30 2v71_A Nuclear distribution pr 94.5 0.37 1.3E-05 49.9 13.0 27 1148-1174 156-182 (189)
31 2p65_A Hypothetical protein PF 94.3 0.044 1.5E-06 55.4 5.8 64 255-319 5-69 (187)
32 3o0z_A RHO-associated protein 93.8 1.7 5.7E-05 44.1 15.8 45 998-1042 44-88 (168)
33 4eun_A Thermoresistant glucoki 93.2 0.045 1.5E-06 57.2 3.6 32 286-317 22-53 (200)
34 3uie_A Adenylyl-sulfate kinase 93.1 0.067 2.3E-06 55.9 4.6 30 289-318 21-50 (200)
35 3c8u_A Fructokinase; YP_612366 93.0 0.046 1.6E-06 57.6 3.3 30 290-319 19-48 (208)
36 1ex7_A Guanylate kinase; subst 93.0 0.043 1.5E-06 57.3 2.9 22 296-317 4-25 (186)
37 3ec2_A DNA replication protein 92.6 0.094 3.2E-06 53.6 4.9 28 292-319 37-64 (180)
38 2w58_A DNAI, primosome compone 92.4 0.11 3.7E-06 54.0 5.1 27 293-319 54-80 (202)
39 1kgd_A CASK, peripheral plasma 92.4 0.056 1.9E-06 55.6 2.9 25 293-317 5-29 (180)
40 2i1j_A Moesin; FERM, coiled-co 92.3 0.066 2.3E-06 65.5 3.7 29 1148-1176 506-534 (575)
41 3vkg_A Dynein heavy chain, cyt 92.0 5.2 0.00018 57.7 22.3 23 292-314 1303-1325(3245)
42 1lvg_A Guanylate kinase, GMP k 92.0 0.068 2.3E-06 56.0 2.9 26 293-318 4-29 (198)
43 3bos_A Putative DNA replicatio 92.0 0.14 4.8E-06 54.0 5.4 38 283-320 42-79 (242)
44 3a00_A Guanylate kinase, GMP k 92.0 0.055 1.9E-06 55.9 2.1 25 294-318 2-26 (186)
45 3o0z_A RHO-associated protein 91.9 3.8 0.00013 41.5 15.3 108 998-1122 9-116 (168)
46 1qhx_A CPT, protein (chloramph 91.9 0.07 2.4E-06 54.2 2.8 25 293-317 3-27 (178)
47 2eyu_A Twitching motility prot 91.9 0.15 5E-06 56.1 5.6 37 283-320 16-52 (261)
48 1zp6_A Hypothetical protein AT 91.7 0.081 2.8E-06 54.4 3.0 29 287-315 3-31 (191)
49 3tau_A Guanylate kinase, GMP k 91.2 0.084 2.9E-06 55.6 2.5 27 291-317 6-32 (208)
50 3tr0_A Guanylate kinase, GMP k 91.1 0.099 3.4E-06 54.3 3.1 26 292-317 6-31 (205)
51 2kjq_A DNAA-related protein; s 91.1 0.14 5E-06 51.1 4.1 28 292-319 35-62 (149)
52 2qor_A Guanylate kinase; phosp 91.1 0.085 2.9E-06 55.2 2.5 27 291-317 10-36 (204)
53 3kb2_A SPBC2 prophage-derived 91.0 0.11 3.8E-06 52.0 3.3 24 295-318 3-26 (173)
54 3t61_A Gluconokinase; PSI-biol 91.0 0.11 3.7E-06 54.1 3.3 24 294-317 19-42 (202)
55 1zuh_A Shikimate kinase; alpha 90.9 0.12 4.2E-06 52.0 3.4 26 293-318 7-32 (168)
56 3vaa_A Shikimate kinase, SK; s 90.8 0.13 4.5E-06 53.5 3.6 25 293-317 25-49 (199)
57 1knq_A Gluconate kinase; ALFA/ 90.5 0.17 5.7E-06 51.3 4.0 26 292-317 7-32 (175)
58 1kht_A Adenylate kinase; phosp 90.5 0.13 4.5E-06 52.5 3.2 26 293-318 3-28 (192)
59 2j41_A Guanylate kinase; GMP, 90.4 0.11 3.7E-06 54.0 2.5 26 292-317 5-30 (207)
60 1znw_A Guanylate kinase, GMP k 90.4 0.12 4.2E-06 54.2 3.0 27 291-317 18-44 (207)
61 2v71_A Nuclear distribution pr 90.4 15 0.00051 38.0 18.2 31 1097-1127 96-126 (189)
62 1m7g_A Adenylylsulfate kinase; 90.3 0.21 7.1E-06 52.6 4.7 31 288-318 20-50 (211)
63 3asz_A Uridine kinase; cytidin 90.3 0.14 4.8E-06 53.5 3.4 28 291-318 4-31 (211)
64 3gn4_A Myosin-VI; unconvention 90.3 1.1 3.7E-05 44.6 9.3 22 906-927 45-66 (148)
65 1np6_A Molybdopterin-guanine d 90.3 0.16 5.6E-06 52.3 3.7 28 294-321 7-34 (174)
66 2ocy_A RAB guanine nucleotide 90.2 8.1 0.00028 38.7 15.6 23 1101-1123 77-99 (154)
67 1rz3_A Hypothetical protein rb 90.2 0.18 6.2E-06 52.7 4.1 32 291-322 20-51 (201)
68 2pez_A Bifunctional 3'-phospho 90.2 0.18 6E-06 51.4 3.8 28 292-319 4-31 (179)
69 3iij_A Coilin-interacting nucl 90.1 0.15 5E-06 52.0 3.2 26 292-317 10-35 (180)
70 1s96_A Guanylate kinase, GMP k 90.1 0.13 4.5E-06 55.0 2.9 28 291-318 14-41 (219)
71 1odf_A YGR205W, hypothetical 3 90.0 0.29 9.9E-06 54.6 5.7 30 290-319 28-57 (290)
72 1p9r_A General secretion pathw 89.8 0.24 8.2E-06 58.2 5.1 37 282-319 157-193 (418)
73 3ney_A 55 kDa erythrocyte memb 89.8 0.17 5.9E-06 53.2 3.5 27 292-318 18-44 (197)
74 1ye8_A Protein THEP1, hypothet 89.8 0.16 5.6E-06 52.3 3.3 23 295-317 2-24 (178)
75 1gvn_B Zeta; postsegregational 89.6 0.2 6.8E-06 55.8 3.9 27 291-317 31-57 (287)
76 2rhm_A Putative kinase; P-loop 89.5 0.19 6.4E-06 51.5 3.5 25 293-317 5-29 (193)
77 2kxw_B Sodium channel protein 89.5 0.17 6E-06 35.6 2.1 19 882-900 5-23 (27)
78 1htw_A HI0065; nucleotide-bind 89.4 0.2 6.8E-06 50.8 3.5 27 291-317 31-57 (158)
79 1z6g_A Guanylate kinase; struc 89.4 0.14 4.7E-06 54.5 2.4 26 292-317 22-47 (218)
80 3jvv_A Twitching mobility prot 89.3 0.32 1.1E-05 55.9 5.5 36 284-320 115-150 (356)
81 1xjc_A MOBB protein homolog; s 89.3 0.24 8.1E-06 50.9 4.0 28 294-321 5-32 (169)
82 3cr8_A Sulfate adenylyltranfer 89.3 0.32 1.1E-05 59.2 5.7 31 291-321 367-397 (552)
83 1nks_A Adenylate kinase; therm 89.3 0.16 5.5E-06 51.9 2.7 25 295-319 3-27 (194)
84 2chg_A Replication factor C sm 89.3 0.29 9.9E-06 50.5 4.7 33 286-318 31-63 (226)
85 3e70_C DPA, signal recognition 89.2 0.27 9.2E-06 55.9 4.7 34 289-322 125-158 (328)
86 2f1r_A Molybdopterin-guanine d 89.2 0.097 3.3E-06 53.8 1.0 27 294-320 3-29 (171)
87 1njg_A DNA polymerase III subu 89.2 0.36 1.2E-05 50.3 5.5 30 290-319 42-71 (250)
88 1kag_A SKI, shikimate kinase I 89.1 0.17 5.8E-06 51.0 2.7 24 294-317 5-28 (173)
89 3trf_A Shikimate kinase, SK; a 89.0 0.22 7.5E-06 50.8 3.5 25 293-317 5-29 (185)
90 3tqf_A HPR(Ser) kinase; transf 89.0 0.19 6.4E-06 51.8 2.8 24 292-315 15-38 (181)
91 2l53_B CAM, voltage-gated sodi 88.9 0.23 7.9E-06 36.1 2.5 20 883-902 6-25 (31)
92 2z0h_A DTMP kinase, thymidylat 88.8 0.24 8.3E-06 50.9 3.7 26 295-320 2-27 (197)
93 2yvu_A Probable adenylyl-sulfa 88.8 0.31 1.1E-05 49.9 4.5 30 292-321 12-41 (186)
94 3lw7_A Adenylate kinase relate 88.8 0.18 6E-06 50.4 2.5 19 295-313 3-21 (179)
95 1l8q_A Chromosomal replication 88.7 0.3 1E-05 54.9 4.7 29 292-320 36-64 (324)
96 3aez_A Pantothenate kinase; tr 88.7 0.35 1.2E-05 54.5 5.2 30 290-319 87-116 (312)
97 2ocy_A RAB guanine nucleotide 88.7 10 0.00035 37.9 15.0 56 1014-1073 49-105 (154)
98 2bdt_A BH3686; alpha-beta prot 88.7 0.23 7.8E-06 51.0 3.4 22 294-315 3-24 (189)
99 2bbw_A Adenylate kinase 4, AK4 88.6 0.24 8.2E-06 53.4 3.6 26 293-318 27-52 (246)
100 1e6c_A Shikimate kinase; phosp 88.4 0.23 8E-06 49.9 3.2 23 295-317 4-26 (173)
101 2ewv_A Twitching motility prot 88.4 0.26 8.9E-06 57.0 4.0 30 291-320 134-163 (372)
102 2jaq_A Deoxyguanosine kinase; 88.4 0.23 8E-06 51.2 3.2 24 295-318 2-25 (205)
103 4gp7_A Metallophosphoesterase; 88.3 0.29 9.9E-06 49.8 3.8 21 292-312 8-28 (171)
104 3cm0_A Adenylate kinase; ATP-b 88.3 0.28 9.6E-06 50.0 3.8 25 293-317 4-28 (186)
105 1cke_A CK, MSSA, protein (cyti 88.3 0.25 8.6E-06 52.1 3.5 25 293-317 5-29 (227)
106 2pt5_A Shikimate kinase, SK; a 88.3 0.24 8.2E-06 49.6 3.2 23 295-317 2-24 (168)
107 1gtv_A TMK, thymidylate kinase 88.2 0.11 3.8E-06 54.2 0.6 25 295-319 2-26 (214)
108 1sq5_A Pantothenate kinase; P- 88.1 0.39 1.3E-05 53.9 5.0 28 291-318 78-105 (308)
109 1rj9_A FTSY, signal recognitio 88.1 0.3 1E-05 54.8 4.1 30 292-321 101-130 (304)
110 3b9q_A Chloroplast SRP recepto 88.1 0.34 1.2E-05 54.3 4.6 30 292-321 99-128 (302)
111 1d2n_A N-ethylmaleimide-sensit 88.0 0.47 1.6E-05 51.8 5.5 28 290-317 61-88 (272)
112 2iyv_A Shikimate kinase, SK; t 87.9 0.27 9.2E-06 50.2 3.3 23 295-317 4-26 (184)
113 1via_A Shikimate kinase; struc 87.6 0.28 9.7E-06 49.7 3.2 23 295-317 6-28 (175)
114 3lnc_A Guanylate kinase, GMP k 87.6 0.22 7.5E-06 53.1 2.5 26 292-317 26-52 (231)
115 1iqp_A RFCS; clamp loader, ext 87.5 0.37 1.3E-05 53.5 4.4 33 286-318 39-71 (327)
116 2vp4_A Deoxynucleoside kinase; 87.4 0.18 6E-06 54.0 1.6 26 291-316 18-43 (230)
117 1fnn_A CDC6P, cell division co 87.3 0.52 1.8E-05 53.7 5.6 37 282-318 31-69 (389)
118 3fb4_A Adenylate kinase; psych 87.2 0.3 1E-05 51.2 3.3 22 296-317 3-24 (216)
119 1ly1_A Polynucleotide kinase; 87.1 0.33 1.1E-05 48.9 3.4 22 294-315 3-24 (181)
120 2jeo_A Uridine-cytidine kinase 87.0 0.38 1.3E-05 51.8 4.0 27 291-317 23-49 (245)
121 1svm_A Large T antigen; AAA+ f 87.0 0.6 2E-05 54.0 5.8 45 273-317 148-193 (377)
122 2qby_B CDC6 homolog 3, cell di 87.0 0.49 1.7E-05 53.9 5.2 38 282-319 34-71 (384)
123 3n70_A Transport activator; si 87.0 0.24 8.3E-06 48.9 2.2 25 291-315 22-46 (145)
124 2pbr_A DTMP kinase, thymidylat 86.9 0.32 1.1E-05 49.6 3.3 25 295-319 2-26 (195)
125 3te6_A Regulatory protein SIR3 86.9 0.42 1.4E-05 54.1 4.3 38 283-320 35-72 (318)
126 3tlx_A Adenylate kinase 2; str 86.8 0.7 2.4E-05 49.8 5.9 27 291-317 27-53 (243)
127 2plr_A DTMP kinase, probable t 86.7 0.33 1.1E-05 50.3 3.3 26 293-318 4-29 (213)
128 1qf9_A UMP/CMP kinase, protein 86.7 0.36 1.2E-05 49.2 3.4 25 293-317 6-30 (194)
129 1ofh_A ATP-dependent HSL prote 86.6 0.45 1.5E-05 52.5 4.4 27 291-317 48-74 (310)
130 1m8p_A Sulfate adenylyltransfe 86.6 0.7 2.4E-05 56.5 6.4 50 270-320 369-423 (573)
131 2og2_A Putative signal recogni 86.5 0.46 1.6E-05 54.6 4.6 30 292-321 156-185 (359)
132 2bwj_A Adenylate kinase 5; pho 86.5 0.3 1E-05 50.2 2.7 26 293-318 12-37 (199)
133 1tev_A UMP-CMP kinase; ploop, 86.5 0.35 1.2E-05 49.3 3.3 25 293-317 3-27 (196)
134 3ake_A Cytidylate kinase; CMP 86.5 0.35 1.2E-05 50.1 3.3 23 295-317 4-26 (208)
135 4e22_A Cytidylate kinase; P-lo 86.5 0.34 1.2E-05 52.7 3.2 27 292-318 26-52 (252)
136 3a4m_A L-seryl-tRNA(SEC) kinas 86.5 0.39 1.3E-05 52.4 3.7 29 293-321 4-32 (260)
137 2w0m_A SSO2452; RECA, SSPF, un 86.3 0.47 1.6E-05 49.7 4.2 31 292-322 22-52 (235)
138 2v9p_A Replication protein E1; 86.3 0.39 1.3E-05 53.9 3.7 35 283-317 115-150 (305)
139 1lv7_A FTSH; alpha/beta domain 86.2 0.41 1.4E-05 51.7 3.8 26 292-317 44-69 (257)
140 2wwf_A Thymidilate kinase, put 86.1 0.33 1.1E-05 50.6 2.8 27 293-319 10-36 (212)
141 2i3b_A HCR-ntpase, human cance 86.0 0.38 1.3E-05 50.1 3.2 25 294-318 2-26 (189)
142 1vma_A Cell division protein F 86.0 0.53 1.8E-05 52.9 4.6 46 276-321 79-132 (306)
143 2cdn_A Adenylate kinase; phosp 86.0 0.46 1.6E-05 49.2 3.9 28 290-317 17-44 (201)
144 2c95_A Adenylate kinase 1; tra 86.0 0.39 1.3E-05 49.2 3.2 25 293-317 9-33 (196)
145 2gza_A Type IV secretion syste 86.0 0.18 6.2E-06 58.0 0.8 28 292-319 174-201 (361)
146 2p5t_B PEZT; postsegregational 85.9 0.34 1.2E-05 52.6 2.9 27 291-317 30-56 (253)
147 1zd8_A GTP:AMP phosphotransfer 85.9 0.29 1E-05 52.0 2.3 26 292-317 6-31 (227)
148 2gks_A Bifunctional SAT/APS ki 85.8 0.82 2.8E-05 55.5 6.5 50 270-319 345-398 (546)
149 2vli_A Antibiotic resistance p 85.8 0.27 9.2E-06 49.9 1.9 25 293-317 5-29 (183)
150 3dl0_A Adenylate kinase; phosp 85.8 0.32 1.1E-05 51.0 2.6 22 296-317 3-24 (216)
151 2yhs_A FTSY, cell division pro 85.8 0.52 1.8E-05 56.3 4.6 49 274-322 265-322 (503)
152 2qz4_A Paraplegin; AAA+, SPG7, 85.8 0.44 1.5E-05 51.2 3.7 27 291-317 37-63 (262)
153 2qt1_A Nicotinamide riboside k 85.7 0.26 9E-06 51.4 1.8 25 292-316 20-44 (207)
154 3tif_A Uncharacterized ABC tra 85.6 0.35 1.2E-05 52.2 2.8 25 291-315 29-53 (235)
155 1a7j_A Phosphoribulokinase; tr 85.5 0.31 1.1E-05 54.3 2.4 26 293-318 5-30 (290)
156 2eqb_B RAB guanine nucleotide 85.4 5.1 0.00017 36.9 9.8 47 1006-1052 9-55 (97)
157 2ehv_A Hypothetical protein PH 85.4 0.57 2E-05 49.9 4.4 27 292-318 29-55 (251)
158 1zak_A Adenylate kinase; ATP:A 85.4 0.37 1.2E-05 50.9 2.8 25 294-318 6-30 (222)
159 3nwj_A ATSK2; P loop, shikimat 85.3 0.4 1.4E-05 52.3 3.0 25 293-317 48-72 (250)
160 1uf9_A TT1252 protein; P-loop, 85.2 0.42 1.5E-05 49.2 3.1 25 292-316 7-31 (203)
161 2z4s_A Chromosomal replication 85.2 0.64 2.2E-05 54.9 5.0 39 282-320 118-157 (440)
162 1y63_A LMAJ004144AAA protein; 85.0 0.53 1.8E-05 48.3 3.7 24 293-316 10-33 (184)
163 3oja_B Anopheles plasmodium-re 84.9 11 0.00036 45.9 16.0 56 997-1052 504-559 (597)
164 4a74_A DNA repair and recombin 84.9 0.41 1.4E-05 50.3 2.9 27 292-318 24-50 (231)
165 1nn5_A Similar to deoxythymidy 84.9 0.54 1.9E-05 48.9 3.8 29 292-320 8-36 (215)
166 2v1u_A Cell division control p 84.8 0.42 1.4E-05 54.3 3.1 31 289-319 40-70 (387)
167 2qby_A CDC6 homolog 1, cell di 84.7 0.39 1.3E-05 54.5 2.7 34 286-319 38-71 (386)
168 1hqc_A RUVB; extended AAA-ATPa 84.6 1.1 3.6E-05 49.9 6.2 27 291-317 36-62 (324)
169 2v54_A DTMP kinase, thymidylat 84.6 0.34 1.2E-05 50.1 2.0 25 293-317 4-28 (204)
170 4fcw_A Chaperone protein CLPB; 84.5 0.57 2E-05 51.8 4.0 26 293-318 47-72 (311)
171 1zu4_A FTSY; GTPase, signal re 84.5 0.68 2.3E-05 52.3 4.6 31 292-322 104-134 (320)
172 1ukz_A Uridylate kinase; trans 84.4 0.52 1.8E-05 48.8 3.4 26 292-317 14-39 (203)
173 1g8f_A Sulfate adenylyltransfe 84.4 0.5 1.7E-05 56.8 3.6 45 273-319 377-421 (511)
174 2ze6_A Isopentenyl transferase 84.3 0.49 1.7E-05 51.4 3.3 23 295-317 3-25 (253)
175 3uk6_A RUVB-like 2; hexameric 84.2 0.72 2.5E-05 52.4 4.7 26 293-318 70-95 (368)
176 2l53_B CAM, voltage-gated sodi 84.1 0.53 1.8E-05 34.3 2.2 20 944-963 6-25 (31)
177 3syl_A Protein CBBX; photosynt 84.1 0.6 2E-05 51.7 3.8 31 290-320 64-94 (309)
178 1ixz_A ATP-dependent metallopr 84.0 0.52 1.8E-05 50.8 3.2 25 293-317 49-73 (254)
179 4edh_A DTMP kinase, thymidylat 83.9 0.57 2E-05 49.7 3.4 28 293-320 6-33 (213)
180 2oap_1 GSPE-2, type II secreti 83.9 0.42 1.4E-05 57.6 2.6 26 293-318 260-285 (511)
181 3hnw_A Uncharacterized protein 83.8 8.6 0.00029 37.9 11.5 34 1007-1040 73-106 (138)
182 3bas_A Myosin heavy chain, str 83.7 15 0.00051 33.4 12.3 50 997-1046 16-65 (89)
183 3a7p_A Autophagy protein 16; c 83.7 13 0.00046 36.8 12.7 66 995-1060 68-133 (152)
184 3pvs_A Replication-associated 83.7 0.61 2.1E-05 55.2 3.9 37 282-318 39-75 (447)
185 1sxj_E Activator 1 40 kDa subu 83.6 0.58 2E-05 52.9 3.6 36 283-318 25-61 (354)
186 1nij_A Hypothetical protein YJ 83.5 0.45 1.6E-05 53.6 2.6 23 294-316 5-27 (318)
187 3r20_A Cytidylate kinase; stru 83.5 0.57 2E-05 50.5 3.3 26 293-318 9-34 (233)
188 3b9p_A CG5977-PA, isoform A; A 83.5 0.54 1.8E-05 51.9 3.1 26 292-317 53-78 (297)
189 1vht_A Dephospho-COA kinase; s 83.4 0.47 1.6E-05 49.9 2.5 23 293-315 4-26 (218)
190 1jjv_A Dephospho-COA kinase; P 83.4 0.48 1.6E-05 49.3 2.6 21 295-315 4-24 (206)
191 1e4v_A Adenylate kinase; trans 83.4 0.51 1.7E-05 49.6 2.8 22 296-317 3-24 (214)
192 2kxw_B Sodium channel protein 83.3 0.58 2E-05 33.0 2.1 18 944-961 6-23 (27)
193 2bjv_A PSP operon transcriptio 83.3 0.64 2.2E-05 50.4 3.7 26 292-317 28-53 (265)
194 1sxj_C Activator 1 40 kDa subu 83.3 0.84 2.9E-05 51.6 4.7 35 284-318 37-71 (340)
195 3oja_B Anopheles plasmodium-re 83.2 15 0.00051 44.5 16.2 78 991-1072 505-582 (597)
196 2chq_A Replication factor C sm 83.1 0.75 2.6E-05 50.8 4.1 35 284-318 29-63 (319)
197 1r6b_X CLPA protein; AAA+, N-t 83.0 1.4 4.7E-05 55.7 7.0 65 254-319 168-233 (758)
198 2xb4_A Adenylate kinase; ATP-b 83.0 0.61 2.1E-05 49.5 3.2 23 295-317 2-24 (223)
199 2if2_A Dephospho-COA kinase; a 82.9 0.44 1.5E-05 49.4 2.1 21 295-315 3-23 (204)
200 1jr3_A DNA polymerase III subu 82.6 1.1 3.8E-05 50.8 5.4 30 290-319 35-64 (373)
201 2cbz_A Multidrug resistance-as 82.6 0.56 1.9E-05 50.6 2.8 27 291-317 29-55 (237)
202 3co5_A Putative two-component 82.6 0.28 9.5E-06 48.4 0.3 24 292-315 26-49 (143)
203 2ff7_A Alpha-hemolysin translo 82.6 0.54 1.8E-05 51.1 2.6 25 292-316 34-58 (247)
204 4tmk_A Protein (thymidylate ki 82.4 0.66 2.3E-05 49.3 3.2 28 294-321 4-31 (213)
205 1mv5_A LMRA, multidrug resista 82.4 0.61 2.1E-05 50.5 2.9 27 291-317 26-52 (243)
206 2ghi_A Transport protein; mult 82.3 0.57 2E-05 51.3 2.8 26 291-316 44-69 (260)
207 1sxj_D Activator 1 41 kDa subu 82.3 0.86 3E-05 51.2 4.3 36 283-318 48-83 (353)
208 4eaq_A DTMP kinase, thymidylat 82.1 0.86 2.9E-05 48.8 4.0 28 292-319 25-52 (229)
209 3h4m_A Proteasome-activating n 82.0 0.66 2.3E-05 50.7 3.2 27 291-317 49-75 (285)
210 2onk_A Molybdate/tungstate ABC 82.0 0.68 2.3E-05 50.1 3.2 26 291-317 23-48 (240)
211 2d2e_A SUFC protein; ABC-ATPas 82.0 0.67 2.3E-05 50.4 3.1 25 292-316 28-52 (250)
212 1aky_A Adenylate kinase; ATP:A 82.0 0.8 2.7E-05 48.2 3.6 26 293-318 4-29 (220)
213 3lv8_A DTMP kinase, thymidylat 82.0 0.7 2.4E-05 49.9 3.2 29 293-321 27-55 (236)
214 3tqc_A Pantothenate kinase; bi 82.0 0.87 3E-05 51.5 4.1 27 293-319 92-118 (321)
215 3cf0_A Transitional endoplasmi 81.9 0.68 2.3E-05 51.6 3.2 27 291-317 47-73 (301)
216 2qgz_A Helicase loader, putati 81.8 1.1 3.9E-05 50.1 5.0 28 293-320 152-180 (308)
217 1in4_A RUVB, holliday junction 81.7 1.2 4.1E-05 50.4 5.2 27 291-317 49-75 (334)
218 3gfo_A Cobalt import ATP-bindi 81.7 0.58 2E-05 51.7 2.5 25 292-316 33-57 (275)
219 1b0u_A Histidine permease; ABC 81.6 0.63 2.2E-05 51.0 2.7 25 291-315 30-54 (262)
220 3llm_A ATP-dependent RNA helic 81.6 1.2 4E-05 47.5 4.8 36 276-314 62-97 (235)
221 2zu0_C Probable ATP-dependent 81.5 0.73 2.5E-05 50.6 3.2 26 291-316 44-69 (267)
222 1iy2_A ATP-dependent metallopr 81.5 0.74 2.5E-05 50.5 3.3 25 293-317 73-97 (278)
223 3v9p_A DTMP kinase, thymidylat 81.5 0.75 2.6E-05 49.4 3.2 29 292-320 24-52 (227)
224 2ixe_A Antigen peptide transpo 81.5 0.64 2.2E-05 51.2 2.8 27 291-317 43-69 (271)
225 3u61_B DNA polymerase accessor 81.5 1.6 5.4E-05 48.7 6.1 51 263-317 17-72 (324)
226 3b85_A Phosphate starvation-in 81.4 0.9 3.1E-05 48.0 3.8 31 283-316 15-45 (208)
227 2e7s_A RAB guanine nucleotide 81.4 4.9 0.00017 39.3 8.5 61 1010-1074 33-94 (135)
228 4g1u_C Hemin import ATP-bindin 81.4 0.61 2.1E-05 51.3 2.6 26 292-317 36-61 (266)
229 3pxg_A Negative regulator of g 81.4 1.6 5.6E-05 51.8 6.4 31 289-319 197-227 (468)
230 2olj_A Amino acid ABC transpor 81.2 0.67 2.3E-05 50.9 2.7 25 291-315 48-72 (263)
231 1uj2_A Uridine-cytidine kinase 81.2 0.8 2.7E-05 49.5 3.4 26 293-318 22-47 (252)
232 1ko7_A HPR kinase/phosphatase; 81.1 0.68 2.3E-05 52.1 2.8 24 293-316 144-167 (314)
233 3pfi_A Holliday junction ATP-d 81.1 1.6 5.5E-05 48.9 6.0 28 290-317 52-79 (338)
234 3cvf_A Homer-3, homer protein 80.9 5.1 0.00017 35.6 7.7 53 1012-1064 9-61 (79)
235 3kl4_A SRP54, signal recogniti 80.9 1.8 6.1E-05 51.0 6.4 31 292-322 96-126 (433)
236 4anj_A Unconventional myosin-V 80.9 2.2 7.5E-05 55.4 7.7 44 905-964 774-817 (1052)
237 3sop_A Neuronal-specific septi 80.8 0.67 2.3E-05 51.0 2.6 27 295-321 4-30 (270)
238 2r62_A Cell division protease 80.8 0.53 1.8E-05 51.0 1.8 26 292-317 43-68 (268)
239 2pcj_A ABC transporter, lipopr 80.8 0.64 2.2E-05 49.6 2.4 23 292-314 29-51 (224)
240 2efr_A General control protein 80.7 27 0.00092 35.0 13.9 57 992-1048 74-130 (155)
241 1knx_A Probable HPR(Ser) kinas 80.7 0.63 2.1E-05 52.4 2.3 23 293-315 147-169 (312)
242 2px0_A Flagellar biosynthesis 80.6 0.96 3.3E-05 50.5 3.8 28 292-319 104-131 (296)
243 1a5t_A Delta prime, HOLB; zinc 80.5 1.6 5.6E-05 49.2 5.8 31 289-319 20-50 (334)
244 1g6h_A High-affinity branched- 80.5 0.7 2.4E-05 50.4 2.6 25 292-316 32-56 (257)
245 1ic2_A Tropomyosin alpha chain 80.4 17 0.00059 32.3 11.3 47 1000-1046 11-57 (81)
246 3ld9_A DTMP kinase, thymidylat 80.4 1.2 4.2E-05 47.6 4.5 30 290-319 18-47 (223)
247 1sgw_A Putative ABC transporte 80.4 0.61 2.1E-05 49.6 2.0 24 292-315 34-57 (214)
248 2pt7_A CAG-ALFA; ATPase, prote 80.3 0.34 1.2E-05 55.0 0.0 27 293-319 171-197 (330)
249 1um8_A ATP-dependent CLP prote 80.2 0.85 2.9E-05 52.3 3.4 26 292-317 71-96 (376)
250 2yz2_A Putative ABC transporte 80.2 0.75 2.6E-05 50.5 2.8 25 291-315 31-55 (266)
251 2pze_A Cystic fibrosis transme 80.2 0.73 2.5E-05 49.4 2.6 26 292-317 33-58 (229)
252 1cr0_A DNA primase/helicase; R 80.0 1.1 3.6E-05 49.6 3.9 29 291-319 33-61 (296)
253 1vpl_A ABC transporter, ATP-bi 80.0 0.77 2.6E-05 50.2 2.7 24 291-314 39-62 (256)
254 2qmh_A HPR kinase/phosphorylas 79.9 0.86 2.9E-05 48.0 2.9 25 292-316 33-57 (205)
255 1ls1_A Signal recognition part 79.7 1.3 4.4E-05 49.4 4.5 31 292-322 97-127 (295)
256 2grj_A Dephospho-COA kinase; T 79.6 0.98 3.4E-05 47.1 3.3 51 293-343 12-64 (192)
257 1ji0_A ABC transporter; ATP bi 79.5 0.8 2.7E-05 49.4 2.6 25 292-316 31-55 (240)
258 2cvh_A DNA repair and recombin 79.4 0.97 3.3E-05 47.0 3.2 33 283-315 8-42 (220)
259 3rlf_A Maltose/maltodextrin im 79.4 0.93 3.2E-05 52.5 3.2 27 291-317 27-53 (381)
260 2ga8_A Hypothetical 39.9 kDa p 79.4 1.9 6.6E-05 49.3 5.8 41 278-318 6-49 (359)
261 1ak2_A Adenylate kinase isoenz 79.3 0.98 3.4E-05 48.1 3.3 26 293-318 16-41 (233)
262 3hws_A ATP-dependent CLP prote 79.3 1.3 4.5E-05 50.5 4.5 26 292-317 50-75 (363)
263 3be4_A Adenylate kinase; malar 79.1 0.88 3E-05 47.9 2.7 24 294-317 6-29 (217)
264 3foz_A TRNA delta(2)-isopenten 79.1 1 3.5E-05 50.6 3.4 30 287-316 4-33 (316)
265 1sxj_B Activator 1 37 kDa subu 79.1 1.5 5.1E-05 48.4 4.8 33 286-318 35-67 (323)
266 4gkw_A Spindle assembly abnorm 78.9 26 0.00089 33.5 12.2 19 1056-1074 68-86 (167)
267 1w5s_A Origin recognition comp 78.7 1.8 6.1E-05 49.7 5.4 37 282-318 36-77 (412)
268 3ol1_A Vimentin; structural ge 78.7 16 0.00054 35.1 11.1 61 993-1053 39-99 (119)
269 1ojl_A Transcriptional regulat 78.5 0.92 3.1E-05 50.7 2.8 27 291-317 23-49 (304)
270 2nq2_C Hypothetical ABC transp 78.4 0.89 3E-05 49.6 2.6 25 292-316 30-54 (253)
271 3nh6_A ATP-binding cassette SU 78.4 0.43 1.5E-05 53.7 0.1 28 291-318 78-105 (306)
272 2qi9_C Vitamin B12 import ATP- 78.3 0.9 3.1E-05 49.4 2.6 24 292-315 25-48 (249)
273 2ihy_A ABC transporter, ATP-bi 78.3 0.89 3.1E-05 50.3 2.6 25 292-316 46-70 (279)
274 1g8p_A Magnesium-chelatase 38 78.2 0.93 3.2E-05 50.9 2.8 26 292-317 44-69 (350)
275 3dm5_A SRP54, signal recogniti 78.0 2.2 7.4E-05 50.3 5.9 30 292-321 99-128 (443)
276 3pey_A ATP-dependent RNA helic 78.0 2.9 0.0001 47.2 6.9 62 249-314 4-65 (395)
277 1qde_A EIF4A, translation init 77.8 2.4 8.1E-05 44.3 5.7 62 250-317 14-76 (224)
278 2rcn_A Probable GTPase ENGC; Y 77.8 0.84 2.9E-05 52.4 2.3 26 292-317 214-239 (358)
279 2dr3_A UPF0273 protein PH0284; 77.7 1.4 4.8E-05 46.6 3.9 30 292-321 22-51 (247)
280 1n0w_A DNA repair protein RAD5 77.7 1.1 3.8E-05 47.4 3.0 24 292-315 23-46 (243)
281 1q3t_A Cytidylate kinase; nucl 77.6 1.4 4.8E-05 47.0 3.9 26 292-317 15-40 (236)
282 3tmk_A Thymidylate kinase; pho 77.5 1 3.6E-05 47.9 2.7 26 293-318 5-30 (216)
283 3d3q_A TRNA delta(2)-isopenten 77.5 1 3.4E-05 51.3 2.8 24 294-317 8-31 (340)
284 1vec_A ATP-dependent RNA helic 77.4 3.2 0.00011 42.6 6.5 57 250-312 3-59 (206)
285 1ltq_A Polynucleotide kinase; 77.2 1.1 3.7E-05 49.5 2.9 23 294-316 3-25 (301)
286 2efr_A General control protein 77.0 27 0.00091 35.1 12.5 53 1000-1052 54-106 (155)
287 1t6n_A Probable ATP-dependent 77.0 5.2 0.00018 41.6 8.0 62 248-315 12-73 (220)
288 2pjz_A Hypothetical protein ST 77.0 1 3.5E-05 49.4 2.6 24 293-316 30-53 (263)
289 1sxj_A Activator 1 95 kDa subu 76.9 1.3 4.4E-05 53.3 3.7 26 292-317 76-101 (516)
290 3tui_C Methionine import ATP-b 76.8 1.2 4.2E-05 51.2 3.2 25 291-315 52-76 (366)
291 3kta_A Chromosome segregation 76.8 1.1 3.6E-05 45.5 2.5 24 294-317 27-50 (182)
292 3eie_A Vacuolar protein sortin 76.6 1.5 5E-05 49.3 3.8 26 292-317 50-75 (322)
293 3fvq_A Fe(3+) IONS import ATP- 76.6 1.1 3.7E-05 51.5 2.8 26 292-317 29-54 (359)
294 2jee_A YIIU; FTSZ, septum, coi 76.6 41 0.0014 30.0 12.1 39 1003-1041 7-45 (81)
295 2h92_A Cytidylate kinase; ross 76.6 1.1 3.9E-05 46.8 2.7 24 294-317 4-27 (219)
296 3ice_A Transcription terminati 76.5 2.4 8.1E-05 49.2 5.4 47 274-320 155-201 (422)
297 3t15_A Ribulose bisphosphate c 76.5 1.3 4.3E-05 49.3 3.2 27 291-317 34-60 (293)
298 2yyz_A Sugar ABC transporter, 76.3 1.3 4.4E-05 50.9 3.3 25 292-316 28-52 (359)
299 3d8b_A Fidgetin-like protein 1 76.3 1.2 4.2E-05 50.8 3.1 27 291-317 115-141 (357)
300 3ber_A Probable ATP-dependent 76.3 3.3 0.00011 44.5 6.4 65 249-319 42-107 (249)
301 1lw7_A Transcriptional regulat 76.2 1.1 3.6E-05 51.4 2.6 27 293-319 170-196 (365)
302 3bas_A Myosin heavy chain, str 76.1 16 0.00054 33.2 9.8 60 993-1052 19-78 (89)
303 2gxq_A Heat resistant RNA depe 76.1 3.1 0.00011 42.7 5.9 61 252-318 3-64 (207)
304 2eqb_B RAB guanine nucleotide 76.0 20 0.0007 33.0 10.3 44 993-1036 17-60 (97)
305 3u1c_A Tropomyosin alpha-1 cha 75.9 36 0.0012 31.6 12.4 45 1002-1046 23-67 (101)
306 3tnu_B Keratin, type II cytosk 75.8 26 0.0009 33.9 12.0 38 998-1035 32-69 (129)
307 2ffh_A Protein (FFH); SRP54, s 75.8 1.7 5.8E-05 51.0 4.2 30 292-321 97-126 (425)
308 3fmp_B ATP-dependent RNA helic 75.7 3.3 0.00011 48.8 6.8 60 248-311 90-149 (479)
309 2ocp_A DGK, deoxyguanosine kin 75.7 1.2 4E-05 47.7 2.6 26 293-318 2-27 (241)
310 4ag6_A VIRB4 ATPase, type IV s 75.7 1.4 4.7E-05 50.9 3.3 28 292-319 34-61 (392)
311 2it1_A 362AA long hypothetical 75.7 1.4 4.7E-05 50.7 3.2 25 292-316 28-52 (362)
312 2x8a_A Nuclear valosin-contain 75.6 1.2 4.1E-05 49.0 2.7 25 293-317 44-68 (274)
313 2bbs_A Cystic fibrosis transme 75.6 1.1 3.6E-05 50.0 2.2 27 291-317 62-88 (290)
314 3m6a_A ATP-dependent protease 75.5 1.8 6.3E-05 52.4 4.5 33 286-318 101-133 (543)
315 1wt6_A Myotonin-protein kinase 75.3 28 0.00095 30.9 10.5 45 1006-1050 14-58 (81)
316 3pxi_A Negative regulator of g 75.3 2.9 0.0001 52.7 6.4 30 290-319 198-227 (758)
317 1z47_A CYSA, putative ABC-tran 75.2 1.4 4.8E-05 50.5 3.1 25 292-316 40-64 (355)
318 2qm8_A GTPase/ATPase; G protei 75.1 2.3 7.9E-05 48.2 4.9 42 281-322 42-84 (337)
319 1j8m_F SRP54, signal recogniti 75.1 2 6.9E-05 47.9 4.4 30 293-322 98-127 (297)
320 3exa_A TRNA delta(2)-isopenten 75.0 1.1 3.8E-05 50.4 2.2 23 294-316 4-26 (322)
321 1x79_B RAB GTPase binding effe 74.9 37 0.0013 32.1 12.1 59 1021-1079 43-101 (112)
322 1v43_A Sugar-binding transport 74.9 1.5 5E-05 50.7 3.2 25 292-316 36-60 (372)
323 3fht_A ATP-dependent RNA helic 74.8 3.2 0.00011 47.3 6.1 68 246-317 21-89 (412)
324 2f6r_A COA synthase, bifunctio 74.7 1.6 5.4E-05 48.2 3.4 23 293-315 75-97 (281)
325 3sr0_A Adenylate kinase; phosp 74.6 1.6 5.6E-05 45.9 3.3 23 296-318 3-25 (206)
326 1ic2_A Tropomyosin alpha chain 74.6 43 0.0015 29.7 12.1 49 1004-1052 8-56 (81)
327 2v4h_A NF-kappa-B essential mo 74.5 32 0.0011 32.2 11.3 19 1054-1072 89-107 (110)
328 1w7j_A Myosin VA; motor protei 74.4 2.1 7.2E-05 54.1 4.7 30 901-930 763-792 (795)
329 1nlf_A Regulatory protein REPA 74.2 1.6 5.4E-05 47.8 3.2 27 292-318 29-55 (279)
330 3cve_A Homer protein homolog 1 74.2 21 0.00073 31.1 9.5 58 1016-1073 7-67 (72)
331 1xwi_A SKD1 protein; VPS4B, AA 74.1 1.5 5.3E-05 49.3 3.1 26 292-317 44-69 (322)
332 1g29_1 MALK, maltose transport 74.1 1.5 5.2E-05 50.5 3.1 25 292-316 28-52 (372)
333 1x6v_B Bifunctional 3'-phospho 74.0 2.5 8.6E-05 52.0 5.1 29 292-320 51-79 (630)
334 2hf9_A Probable hydrogenase ni 73.9 2.5 8.4E-05 44.2 4.5 33 286-318 31-63 (226)
335 3hjn_A DTMP kinase, thymidylat 73.8 2 6.9E-05 44.8 3.7 26 296-321 3-28 (197)
336 3ol1_A Vimentin; structural ge 73.6 64 0.0022 30.8 15.4 40 1001-1040 19-58 (119)
337 2qp9_X Vacuolar protein sortin 73.5 1.7 5.6E-05 49.7 3.2 26 292-317 83-108 (355)
338 2pl3_A Probable ATP-dependent 73.4 3.9 0.00013 43.1 6.0 65 249-319 24-89 (236)
339 2xau_A PRE-mRNA-splicing facto 73.4 3.6 0.00012 52.1 6.5 60 248-313 70-129 (773)
340 2wsm_A Hydrogenase expression/ 73.4 2.2 7.4E-05 44.5 3.9 28 291-318 28-55 (221)
341 3d31_A Sulfate/molybdate ABC t 73.3 1.2 4.1E-05 50.9 2.0 24 292-315 25-48 (348)
342 3gd7_A Fusion complex of cysti 73.2 1.5 5.1E-05 50.9 2.8 27 291-317 45-71 (390)
343 1tue_A Replication protein E1; 73.1 1.6 5.4E-05 46.3 2.6 36 282-317 46-82 (212)
344 3zvl_A Bifunctional polynucleo 73.0 1.2 4.2E-05 52.0 2.0 28 290-317 255-282 (416)
345 3crm_A TRNA delta(2)-isopenten 73.0 1.5 5E-05 49.7 2.5 23 294-316 6-28 (323)
346 3umf_A Adenylate kinase; rossm 73.0 1.9 6.4E-05 45.9 3.3 27 292-318 28-54 (217)
347 3eph_A TRNA isopentenyltransfe 72.9 1.5 5.2E-05 51.0 2.7 23 295-317 4-26 (409)
348 3a7p_A Autophagy protein 16; c 72.9 26 0.00089 34.8 11.0 68 990-1057 70-137 (152)
349 2npi_A Protein CLP1; CLP1-PCF1 72.8 1.2 4.1E-05 52.9 1.9 32 291-322 136-167 (460)
350 2obl_A ESCN; ATPase, hydrolase 72.2 1.6 5.6E-05 49.8 2.7 37 281-317 59-95 (347)
351 3ch4_B Pmkase, phosphomevalona 71.9 1.8 6.1E-05 45.6 2.7 23 295-317 13-35 (202)
352 1q0u_A Bstdead; DEAD protein, 71.7 3.6 0.00012 42.9 5.1 58 249-312 3-60 (219)
353 2yv5_A YJEQ protein; hydrolase 71.3 2.4 8.1E-05 47.4 3.7 29 286-314 158-186 (302)
354 2dpy_A FLII, flagellum-specifi 71.2 2 6.7E-05 50.7 3.2 38 281-318 145-182 (438)
355 3upu_A ATP-dependent DNA helic 71.1 3.4 0.00012 48.8 5.3 29 294-322 46-74 (459)
356 1qvr_A CLPB protein; coiled co 70.7 1.8 6E-05 55.5 2.9 31 289-319 187-217 (854)
357 3vfd_A Spastin; ATPase, microt 70.6 2 7E-05 49.4 3.1 25 292-316 147-171 (389)
358 3euj_A Chromosome partition pr 70.6 2 6.9E-05 51.2 3.1 29 294-322 30-58 (483)
359 3fdi_A Uncharacterized protein 70.6 1.7 5.8E-05 45.5 2.2 24 294-317 7-30 (201)
360 1oxx_K GLCV, glucose, ABC tran 70.3 1.3 4.4E-05 50.8 1.3 26 291-316 29-54 (353)
361 1hv8_A Putative ATP-dependent 70.1 6.5 0.00022 43.8 7.1 61 251-316 7-67 (367)
362 2lw1_A ABC transporter ATP-bin 70.0 15 0.00052 33.2 8.2 25 994-1018 21-45 (89)
363 3u59_A Tropomyosin beta chain; 69.7 70 0.0024 29.5 13.1 42 1005-1046 26-67 (101)
364 2va8_A SSO2462, SKI2-type heli 69.4 4.5 0.00015 50.5 6.1 64 251-319 9-73 (715)
365 3eiq_A Eukaryotic initiation f 69.1 6.4 0.00022 44.8 6.9 63 249-317 39-102 (414)
366 3hu3_A Transitional endoplasmi 69.0 2.2 7.6E-05 51.0 3.0 26 291-316 236-261 (489)
367 2w83_C C-JUN-amino-terminal ki 68.9 6.7 0.00023 34.3 5.1 51 997-1047 25-75 (77)
368 3fe2_A Probable ATP-dependent 68.9 9.9 0.00034 40.3 7.9 66 247-318 26-92 (242)
369 3q8t_A Beclin-1; autophagy, AT 68.8 69 0.0023 29.4 12.4 20 1054-1073 73-92 (96)
370 3hdt_A Putative kinase; struct 68.7 2.3 7.7E-05 45.5 2.7 26 293-318 14-39 (223)
371 3ly5_A ATP-dependent RNA helic 68.6 5.2 0.00018 43.3 5.7 36 281-319 82-118 (262)
372 3qii_A PHD finger protein 20; 68.6 6.2 0.00021 35.5 5.0 55 143-205 18-73 (85)
373 4hcz_A PHD finger protein 1; p 68.5 17 0.00059 30.2 7.1 48 157-204 6-55 (58)
374 2zj8_A DNA helicase, putative 68.5 4 0.00014 51.1 5.3 63 252-319 3-66 (720)
375 3b5x_A Lipid A export ATP-bind 68.4 1.7 5.9E-05 53.1 2.0 28 291-318 367-394 (582)
376 2c9o_A RUVB-like 1; hexameric 68.3 4.7 0.00016 47.5 5.7 26 293-318 63-88 (456)
377 2xxa_A Signal recognition part 67.9 3.7 0.00013 48.3 4.6 30 291-320 98-127 (433)
378 3k1j_A LON protease, ATP-depen 67.6 1.8 6.1E-05 53.2 1.8 25 294-318 61-85 (604)
379 1s2m_A Putative ATP-dependent 67.2 7.2 0.00024 44.3 6.8 60 249-314 20-79 (400)
380 2axn_A 6-phosphofructo-2-kinas 67.2 3.3 0.00011 50.0 4.0 29 292-320 34-62 (520)
381 1pzn_A RAD51, DNA repair and r 67.2 2.5 8.6E-05 48.2 2.9 35 282-316 118-154 (349)
382 1ry6_A Internal kinesin; kines 67.1 3.5 0.00012 47.3 4.0 35 276-310 67-102 (360)
383 2equ_A PHD finger protein 20-l 66.6 13 0.00044 32.7 6.6 49 158-206 13-62 (74)
384 2b8t_A Thymidine kinase; deoxy 66.3 4.3 0.00015 43.3 4.3 28 292-319 11-38 (223)
385 2qen_A Walker-type ATPase; unk 66.1 3.8 0.00013 45.6 4.0 23 294-316 32-54 (350)
386 1tf7_A KAIC; homohexamer, hexa 65.9 2.4 8.3E-05 51.0 2.5 37 283-319 27-66 (525)
387 2f9l_A RAB11B, member RAS onco 65.9 3 0.0001 42.8 2.9 20 295-314 7-26 (199)
388 1yqt_A RNAse L inhibitor; ATP- 65.9 2.9 9.8E-05 50.7 3.2 27 292-318 46-72 (538)
389 3u1c_A Tropomyosin alpha-1 cha 65.8 82 0.0028 29.1 12.4 47 1000-1046 14-60 (101)
390 1wt6_A Myotonin-protein kinase 65.7 44 0.0015 29.6 9.6 36 1017-1052 32-67 (81)
391 4hlc_A DTMP kinase, thymidylat 65.5 3.3 0.00011 43.4 3.2 25 294-318 3-27 (205)
392 2ce7_A Cell division protein F 65.5 3.5 0.00012 49.2 3.7 25 291-315 47-71 (476)
393 2yl4_A ATP-binding cassette SU 65.5 2.5 8.6E-05 51.8 2.6 27 291-317 368-394 (595)
394 3e1s_A Exodeoxyribonuclease V, 65.5 4.9 0.00017 49.0 5.1 29 293-321 204-232 (574)
395 3qf4_B Uncharacterized ABC tra 65.4 2.6 8.8E-05 51.7 2.7 27 291-317 379-405 (598)
396 1qvr_A CLPB protein; coiled co 65.4 5.7 0.0002 50.8 6.0 25 294-318 589-613 (854)
397 1p5z_B DCK, deoxycytidine kina 65.3 1.2 4.1E-05 48.4 -0.3 26 292-317 23-48 (263)
398 3b60_A Lipid A export ATP-bind 65.3 1.8 6.1E-05 53.0 1.2 27 291-317 367-393 (582)
399 1w36_D RECD, exodeoxyribonucle 64.9 5.1 0.00018 49.2 5.2 28 293-320 164-191 (608)
400 2jee_A YIIU; FTSZ, septum, coi 64.7 78 0.0027 28.2 11.2 29 1017-1045 28-56 (81)
401 3gbj_A KIF13B protein; kinesin 64.6 4.4 0.00015 46.3 4.2 22 289-310 89-110 (354)
402 2zan_A Vacuolar protein sortin 64.6 2.9 9.8E-05 49.3 2.7 26 292-317 166-191 (444)
403 2qag_B Septin-6, protein NEDD5 64.5 3.2 0.00011 48.7 3.1 25 291-315 38-64 (427)
404 3a8t_A Adenylate isopentenyltr 64.5 2.6 9E-05 47.9 2.3 24 292-315 39-62 (339)
405 3iv1_A Tumor susceptibility ge 64.3 77 0.0026 28.0 11.3 34 1038-1071 43-76 (78)
406 1bg2_A Kinesin; motor protein, 64.3 4.6 0.00016 45.6 4.3 22 289-310 74-95 (325)
407 1oix_A RAS-related protein RAB 64.3 2.9 9.8E-05 42.7 2.4 20 295-314 31-50 (191)
408 3oja_A Leucine-rich immune mol 64.1 77 0.0026 37.2 15.2 65 1098-1173 412-476 (487)
409 1bif_A 6-phosphofructo-2-kinas 64.1 3.9 0.00013 48.5 3.8 30 291-320 37-66 (469)
410 2xk0_A Polycomb protein PCL; t 64.1 26 0.00088 30.1 7.6 47 158-204 19-65 (69)
411 3dc4_A Kinesin-like protein NO 63.8 4.2 0.00014 46.3 3.8 21 290-310 92-112 (344)
412 1t9h_A YLOQ, probable GTPase E 63.8 0.93 3.2E-05 50.9 -1.6 30 288-317 168-197 (307)
413 1mhn_A SurviVal motor neuron p 63.7 25 0.00086 29.1 7.7 48 158-205 7-58 (59)
414 1yrb_A ATP(GTP)binding protein 63.6 3.7 0.00013 43.9 3.3 28 291-318 12-39 (262)
415 3lre_A Kinesin-like protein KI 63.5 4.8 0.00016 46.1 4.2 22 289-310 102-123 (355)
416 2fna_A Conserved hypothetical 63.0 5.2 0.00018 44.4 4.5 24 294-317 31-54 (357)
417 4a14_A Kinesin, kinesin-like p 63.0 4.9 0.00017 45.8 4.2 21 290-310 81-101 (344)
418 3ghg_A Fibrinogen alpha chain; 62.9 52 0.0018 38.8 12.5 15 1160-1174 233-247 (562)
419 3nwn_A Kinesin-like protein KI 62.8 4.4 0.00015 46.5 3.7 21 290-310 102-122 (359)
420 2y65_A Kinesin, kinesin heavy 62.7 5.1 0.00017 46.0 4.3 21 290-310 82-102 (365)
421 2dhr_A FTSH; AAA+ protein, hex 62.7 3.7 0.00013 49.2 3.2 25 293-317 64-88 (499)
422 2zts_A Putative uncharacterize 62.6 4.7 0.00016 42.5 3.8 25 292-316 29-53 (251)
423 3bor_A Human initiation factor 62.5 6.5 0.00022 41.6 4.9 54 252-311 32-85 (237)
424 4i1u_A Dephospho-COA kinase; s 62.5 2.6 9E-05 44.6 1.7 46 295-344 11-64 (210)
425 1goj_A Kinesin, kinesin heavy 62.4 5.2 0.00018 45.8 4.3 36 274-310 62-98 (355)
426 3ozx_A RNAse L inhibitor; ATP 62.3 3.5 0.00012 49.9 2.9 28 291-318 23-50 (538)
427 3pxi_A Negative regulator of g 62.3 3.9 0.00013 51.5 3.6 23 295-317 523-545 (758)
428 3j16_B RLI1P; ribosome recycli 62.3 3.6 0.00012 50.5 3.2 28 291-318 101-128 (608)
429 1z2a_A RAS-related protein RAB 62.2 4 0.00014 39.8 2.9 20 295-314 7-26 (168)
430 2v3c_C SRP54, signal recogniti 62.1 3.9 0.00013 48.1 3.3 29 293-321 99-127 (432)
431 2qag_C Septin-7; cell cycle, c 61.9 3.2 0.00011 48.6 2.5 25 290-314 28-52 (418)
432 2owm_A Nckin3-434, related to 61.8 5.9 0.0002 46.7 4.7 22 289-310 133-154 (443)
433 1ypw_A Transitional endoplasmi 61.8 3.3 0.00011 52.7 2.7 27 291-317 236-262 (806)
434 2gno_A DNA polymerase III, gam 61.7 6.1 0.00021 44.1 4.6 34 283-316 8-41 (305)
435 2p67_A LAO/AO transport system 61.6 8.6 0.00029 43.5 5.9 42 281-322 43-85 (341)
436 2zfi_A Kinesin-like protein KI 61.6 5.7 0.0002 45.6 4.5 22 289-310 86-107 (366)
437 2wbe_C Bipolar kinesin KRP-130 61.5 5.7 0.00019 45.8 4.4 21 290-310 98-118 (373)
438 3t0q_A AGR253WP; kinesin, alph 61.4 6 0.00021 45.1 4.6 22 289-310 82-103 (349)
439 1u0l_A Probable GTPase ENGC; p 61.4 3.7 0.00013 45.6 2.8 24 292-315 168-191 (301)
440 3fmo_B ATP-dependent RNA helic 61.3 9.8 0.00033 42.1 6.2 30 281-311 120-149 (300)
441 4a82_A Cystic fibrosis transme 61.2 2.3 8E-05 51.8 1.2 27 291-317 365-391 (578)
442 2j37_W Signal recognition part 61.1 8.7 0.0003 46.0 6.1 30 292-321 100-129 (504)
443 1e9r_A Conjugal transfer prote 60.9 3.9 0.00013 47.8 3.0 29 292-320 52-80 (437)
444 1tq4_A IIGP1, interferon-induc 60.9 3.9 0.00013 47.8 2.9 25 293-317 69-93 (413)
445 3l0o_A Transcription terminati 60.8 8 0.00027 44.8 5.4 60 245-319 142-201 (427)
446 3qf4_A ABC transporter, ATP-bi 60.7 2.8 9.5E-05 51.3 1.7 27 291-317 367-393 (587)
447 2zej_A Dardarin, leucine-rich 60.6 3.4 0.00012 41.7 2.2 20 295-314 4-23 (184)
448 2nr8_A Kinesin-like protein KI 60.5 5.1 0.00017 45.9 3.7 21 290-310 101-121 (358)
449 3lda_A DNA repair protein RAD5 60.4 3.6 0.00012 47.9 2.5 33 282-314 165-199 (400)
450 2e7s_A RAB guanine nucleotide 60.3 8.9 0.0003 37.5 4.8 40 993-1032 44-83 (135)
451 3hr8_A Protein RECA; alpha and 60.3 5.4 0.00019 45.6 4.0 39 282-320 47-88 (356)
452 2dyk_A GTP-binding protein; GT 60.2 4.6 0.00016 39.1 2.9 20 295-314 3-22 (161)
453 1x88_A Kinesin-like protein KI 60.0 5.9 0.0002 45.4 4.2 21 290-310 86-106 (359)
454 2orw_A Thymidine kinase; TMTK, 60.0 4.8 0.00016 41.4 3.1 25 293-317 3-28 (184)
455 3p32_A Probable GTPase RV1496/ 59.9 8.8 0.0003 43.6 5.7 43 278-320 63-106 (355)
456 1r6b_X CLPA protein; AAA+, N-t 59.8 5.2 0.00018 50.3 4.1 24 294-317 489-512 (758)
457 1t5c_A CENP-E protein, centrom 59.6 4.9 0.00017 45.8 3.4 21 290-310 75-95 (349)
458 3cvf_A Homer-3, homer protein 59.5 60 0.0021 28.8 9.5 51 1009-1059 13-63 (79)
459 2wji_A Ferrous iron transport 59.5 4.5 0.00015 40.0 2.8 20 295-314 5-24 (165)
460 2vvg_A Kinesin-2; motor protei 59.3 5.8 0.0002 45.3 3.9 21 290-310 87-107 (350)
461 2qnr_A Septin-2, protein NEDD5 59.3 3.5 0.00012 45.9 2.1 25 291-315 16-40 (301)
462 2ce2_X GTPase HRAS; signaling 59.0 4.2 0.00014 39.3 2.4 20 295-314 5-24 (166)
463 3b6u_A Kinesin-like protein KI 58.9 5.9 0.0002 45.6 3.9 21 290-310 99-119 (372)
464 1u8z_A RAS-related protein RAL 58.8 5 0.00017 38.9 2.9 20 295-314 6-25 (168)
465 2oxc_A Probable ATP-dependent 58.7 12 0.00042 39.2 6.2 62 250-317 24-86 (230)
466 2www_A Methylmalonic aciduria 58.7 11 0.00037 42.9 6.1 29 293-321 74-102 (349)
467 3p8d_A Medulloblastoma antigen 58.5 14 0.00047 31.9 5.1 40 166-205 18-58 (67)
468 2zr9_A Protein RECA, recombina 58.4 5.7 0.00019 45.3 3.7 29 292-320 60-88 (349)
469 3dkp_A Probable ATP-dependent 58.2 17 0.00057 38.4 7.2 54 260-318 38-92 (245)
470 1v8k_A Kinesin-like protein KI 58.2 5.2 0.00018 46.6 3.4 21 290-310 152-172 (410)
471 2r44_A Uncharacterized protein 58.2 3.1 0.00011 46.5 1.4 24 294-317 47-70 (331)
472 2wjg_A FEOB, ferrous iron tran 58.1 4.8 0.00017 40.3 2.8 21 294-314 8-28 (188)
473 2ged_A SR-beta, signal recogni 58.1 5.1 0.00017 40.4 2.9 20 295-314 50-69 (193)
474 1tf7_A KAIC; homohexamer, hexa 57.8 5.1 0.00017 48.2 3.3 34 285-318 271-306 (525)
475 1f9v_A Kinesin-like protein KA 57.5 6.8 0.00023 44.7 4.1 22 289-310 81-102 (347)
476 3bk7_A ABC transporter ATP-bin 57.5 4.7 0.00016 49.5 3.0 27 292-318 116-142 (607)
477 1ek0_A Protein (GTP-binding pr 57.4 5.4 0.00019 38.8 2.9 19 295-313 5-23 (170)
478 1ky3_A GTP-binding protein YPT 57.3 5.4 0.00018 39.4 2.9 22 293-314 8-29 (182)
479 2fz4_A DNA repair protein RAD2 57.2 5.7 0.00019 42.4 3.3 33 282-317 100-132 (237)
480 2z0m_A 337AA long hypothetical 57.2 12 0.00039 41.2 5.9 48 261-313 4-51 (337)
481 2i1j_A Moesin; FERM, coiled-co 57.0 10 0.00035 46.2 5.7 32 1139-1171 505-536 (575)
482 3iuy_A Probable ATP-dependent 56.9 12 0.00039 39.2 5.6 33 282-317 49-82 (228)
483 2d9t_A Tudor domain-containing 56.8 35 0.0012 30.0 7.8 53 156-208 11-67 (78)
484 3bh0_A DNAB-like replicative h 56.7 6.8 0.00023 43.8 3.9 27 291-317 66-92 (315)
485 2r2a_A Uncharacterized protein 56.6 5.2 0.00018 41.8 2.7 18 295-312 7-24 (199)
486 1kao_A RAP2A; GTP-binding prot 56.6 5.7 0.00019 38.5 2.9 20 295-314 5-24 (167)
487 2b5u_A Colicin E3; high resolu 56.5 1.3E+02 0.0044 35.3 14.1 22 771-792 202-223 (551)
488 2heh_A KIF2C protein; kinesin, 56.5 6.6 0.00023 45.4 3.8 21 290-310 132-152 (387)
489 2h58_A Kinesin-like protein KI 56.5 6.9 0.00024 44.3 3.9 21 290-310 78-98 (330)
490 3cob_A Kinesin heavy chain-lik 56.4 5.5 0.00019 45.8 3.1 21 290-310 77-97 (369)
491 3thx_A DNA mismatch repair pro 56.2 6.8 0.00023 50.5 4.2 30 292-321 661-692 (934)
492 3ozx_A RNAse L inhibitor; ATP 56.1 5.1 0.00018 48.5 2.9 27 292-318 293-319 (538)
493 1c1y_A RAS-related protein RAP 56.1 5.9 0.0002 38.5 2.9 20 295-314 5-24 (167)
494 2m0o_A PHD finger protein 1; t 56.0 33 0.0011 30.1 7.0 70 132-203 6-77 (79)
495 3ghg_A Fibrinogen alpha chain; 55.9 1.4E+02 0.0046 35.4 14.3 113 952-1067 49-188 (562)
496 1z08_A RAS-related protein RAB 55.8 5.9 0.0002 38.7 2.9 20 296-315 9-28 (170)
497 3szr_A Interferon-induced GTP- 55.8 4.5 0.00015 49.7 2.4 19 296-314 48-66 (608)
498 1z0j_A RAB-22, RAS-related pro 55.7 6 0.0002 38.6 2.9 20 296-315 9-28 (170)
499 1u0j_A DNA replication protein 55.6 12 0.00041 41.0 5.5 40 277-316 86-127 (267)
500 1wms_A RAB-9, RAB9, RAS-relate 55.5 6 0.00021 39.0 2.9 20 296-315 10-29 (177)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=6.2e-215 Score=2052.63 Aligned_cols=806 Identities=42% Similarity=0.703 Sum_probs=739.0
Q ss_pred CCcEEEEEcCCCCEEEEEEEee---cCCeEEEEecCCcEEEEeC----CCccc-CCCCccCCcCccccCCCCCchhHHHH
Q 001002 157 KKLRVWCRLEDGKWESGMIQST---SGDEAFVLLSNGNVVKVST----GELLP-ANPDILEGVDDLIQLSYLNEPSVLNN 228 (1193)
Q Consensus 157 ~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~LnE~svL~~ 228 (1193)
+|.+|||||++++|..|+|++. +++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++||||
T Consensus 9 ~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~n 88 (1080)
T 2dfs_A 9 KYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHN 88 (1080)
T ss_dssp TTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHHHH
T ss_pred cCCEEEEECCCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHHHH
Confidence 4889999999999999999873 3446888888999888877 45777 69999999999999999999999999
Q ss_pred HHHHH-hcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCC
Q 001002 229 IQYRY-SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAG 305 (1193)
Q Consensus 229 L~~Ry-~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaG 305 (1193)
|+.|| ..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||+.|+.+++|||||||||||||
T Consensus 89 L~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAG 168 (1080)
T 2dfs_A 89 LKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAG 168 (1080)
T ss_dssp HHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSS
T ss_pred HHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 99999 999999999999999999999999999999999987654 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCC--ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccce
Q 001002 306 KTETAKFAMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSR 383 (1193)
Q Consensus 306 KTet~k~il~yL~~~~~~~--~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksR 383 (1193)
|||++|+||+||++++++. ..|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||||||
T Consensus 169 KTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsR 248 (1080)
T 2dfs_A 169 KTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248 (1080)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGG
T ss_pred ccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCce
Confidence 9999999999999998764 48999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHH
Q 001002 384 VVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAM 463 (1193)
Q Consensus 384 Vv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~i 463 (1193)
||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++.+||+|
T Consensus 249 Vv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~i 328 (1080)
T 2dfs_A 249 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRI 328 (1080)
T ss_dssp GTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEecCCHHHHHHHHHHHHHHHH
Q 001002 464 LAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIY 543 (1193)
Q Consensus 464 laAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rdalak~LY 543 (1193)
||||||||||+|...+++......+++.++.||.||||++++|.++||+|++.+++|.+++++|++||.++||||||+||
T Consensus 329 laaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY 408 (1080)
T 2dfs_A 329 LAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIY 408 (1080)
T ss_dssp HHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999997665433334788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeec
Q 001002 544 GSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRV 623 (1193)
Q Consensus 544 ~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i 623 (1193)
++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|
T Consensus 409 ~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i 487 (1080)
T 2dfs_A 409 ANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLI 487 (1080)
T ss_dssp HHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccc
Confidence 9999999999999998754 346799999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC--CCceEEeecCccccccccchhh
Q 001002 624 EFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER--GRAFSIRHYAGEVPYDTNGFLE 700 (1193)
Q Consensus 624 ~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl~ 700 (1193)
+|.||++|||||+++ .|||+||||||++|++||.+|++||+++| ++|++|.+++ ...|+|+||||+|+|+++|||+
T Consensus 488 ~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 566 (1080)
T 2dfs_A 488 DFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLE 566 (1080)
T ss_dssp CCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHH
T ss_pred cccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHH
Confidence 999999999999987 99999999999999999999999999988 9999999875 5799999999999999999999
Q ss_pred hcCCcchHHHHHHHhhc-cHHHH-HHhhcccCCCC---CC-----CC------C--CCCCCCCCccccchHHHHHHHHHH
Q 001002 701 KNRDPLQTDIIQLLSSC-TCQVL-QLFASKMLKPS---PK-----PA------A--SSQPGALDTQKQSVGTKFKGQLFK 762 (1193)
Q Consensus 701 KN~D~l~~~~~~ll~~s-~~~~~-~lf~~~~~~~~---~~-----~~------~--~~~~~~~~~~~~tv~~~fk~qL~~ 762 (1193)
||+|+|+++++++|++| +++++ .+|.......+ .. +. + +...++...+++||+++|+.||+.
T Consensus 567 KN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~ 646 (1080)
T 2dfs_A 567 KNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHL 646 (1080)
T ss_dssp HHBCCCCHHHHHHHHTCSSCSHHHHSCC-------------------------------------CCCBHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHH
Confidence 99999999999999999 98876 57865321110 00 00 0 000012244578999999999999
Q ss_pred HHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccCCChHH
Q 001002 763 LMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLS 842 (1193)
Q Consensus 763 Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~ 842 (1193)
||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|+|......|++.
T Consensus 647 Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~ 726 (1080)
T 2dfs_A 647 LMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQ 726 (1080)
T ss_dssp HHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHH
T ss_pred HHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665458999
Q ss_pred HHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHH-HHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHH
Q 001002 843 ISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENT 921 (1193)
Q Consensus 843 ~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~-aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~a 921 (1193)
.|..||..++++++.|++|+||||||.|.++.||..|...+. +++.||++||||++|++|.+++.++++||++|||+++
T Consensus 727 ~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~a 806 (1080)
T 2dfs_A 727 TCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQA 806 (1080)
T ss_dssp HHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 7899999999999999999999999999999999999
Q ss_pred HHHHhhhhhh-hhhhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 922 RRRHASLGKS-CSAVVPEIR---------DEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 922 Rr~~~~~r~~-aa~~IQ~~~---------~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
|+.|..++.. ||+.||+.| .+.+.+++.||+.|||+++|+.++
T Consensus 807 R~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 807 RCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776 999999998 345678888999999988888877
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=2.2e-207 Score=1925.78 Aligned_cols=787 Identities=39% Similarity=0.664 Sum_probs=717.6
Q ss_pred cccccCCCCcccccccchhccCCcEEEEEcCCCCEEEEEEEeecCCeEEEEec-CCcEEEEeCCCcccCCCCccCCcCcc
Q 001002 136 EMKSAKSGEVEWEDNLGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLLS-NGNVVKVSTGELLPANPDILEGVDDL 214 (1193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~-~g~~~~v~~~~~~~~np~~~~~~~Dl 214 (1193)
+|+..+.++..-..+.+|.. +.+||||+++++|..|+|++.+|+.++|.+. +|++++|+.+++.|+||+.++++|||
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~--~~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~~~~Dl 88 (837)
T 1kk8_A 11 QYLAVDRKKLMKEQTAAFDG--KKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 88 (837)
T ss_dssp TTTCCCSSSSCC--CCCCCT--TTEEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBG
T ss_pred hhhhcCHHHHHHhhhccccc--CCEEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhhcchhhh
Confidence 67777777666666667766 5799999999999999999999999999975 78899999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCC
Q 001002 215 IQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGV 292 (1193)
Q Consensus 215 ~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~ 292 (1193)
+.|++|||++|||||+.||..++||||+|++|||||||+++|||+++++..|+++... ||||||||+.||++|+++++
T Consensus 89 ~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~ 168 (837)
T 1kk8_A 89 ANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRE 168 (837)
T ss_dssp GGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999987654 89999999999999999999
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC------------ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEE
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGS------------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 360 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~~~~------------~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 360 (1193)
||||||||||||||||++|+||+||++++++. +.|+++|+++||||||||||||+||||||||||||+
T Consensus 169 nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~ 248 (837)
T 1kk8_A 169 NQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIR 248 (837)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEE
T ss_pred CcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEE
Confidence 99999999999999999999999999998643 469999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCC-CCCCCCccccCCCccccCCcchHHH
Q 001002 361 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQN 439 (1193)
Q Consensus 361 l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 439 (1193)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+++++++.|+| .++.+|+||+++. ..++++||+++
T Consensus 249 i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~~~dD~~~ 327 (837)
T 1kk8_A 249 IHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVDNIDDVEE 327 (837)
T ss_dssp EEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBTTBCHHHH
T ss_pred EEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccCCcChHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899999999974 78999999999
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCC
Q 001002 440 FHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 519 (1193)
Q Consensus 440 f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~ 519 (1193)
|..++.||++|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++||+|++.+|+
T Consensus 328 f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~ 407 (837)
T 1kk8_A 328 FKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGT 407 (837)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC---
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCC
Confidence 99999999999999999999999999999999999998766678889999999999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHH
Q 001002 520 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1193)
Q Consensus 520 e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~ 599 (1193)
|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||+|||
T Consensus 408 e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq 486 (837)
T 1kk8_A 408 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQ 486 (837)
T ss_dssp -CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHH
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccccccHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999853 3456799999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhcCcceeeccc-cChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHH-HHHhCCCCccccC
Q 001002 600 HFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCFKGE 677 (1193)
Q Consensus 600 ~f~~~~f~~eq~eY~~EgI~~~~i~f-~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl-~~~~~~~~~f~~~ 677 (1193)
+||+|+|+.||+||.+|||+|+.|+| .||++|||||++ |.|||+||||||++|++||.+|++|| .+++++|++|.++
T Consensus 487 ~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~~p 565 (837)
T 1kk8_A 487 FFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKP 565 (837)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECC
T ss_pred HHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCCCcCccCC
Confidence 99999999999999999999999999 599999999997 89999999999999999999999996 5678999999876
Q ss_pred C--------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCcc
Q 001002 678 R--------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQ 748 (1193)
Q Consensus 678 ~--------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~ 748 (1193)
+ ...|+|+||||+|+|+++|||+||+|+|+++++++|++|+++++ .+|.......+ .|.+..+....
T Consensus 566 ~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~~g----~~~~~k~~~~~ 641 (837)
T 1kk8_A 566 GKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAG----GGKKKKGKSSA 641 (837)
T ss_dssp CSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC---------------------
T ss_pred CccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccccccC----CCCCCCCCCCC
Confidence 4 46999999999999999999999999999999999999999876 58865321100 01111111134
Q ss_pred ccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhh
Q 001002 749 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 828 (1193)
Q Consensus 749 ~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~ 828 (1193)
..||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||+
T Consensus 642 ~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~RY~ 721 (837)
T 1kk8_A 642 FQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYS 721 (837)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHHG
T ss_pred CCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccC--CChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHH-HHHHHHHHHhhhhHhHHhhhh
Q 001002 829 VLLSEKQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFREL 905 (1193)
Q Consensus 829 ~L~~~~~~~--~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~-aai~IQ~~~Rg~laRk~y~~~ 905 (1193)
+|.+...+. .|+++.|+.||..++++++.|++|+||||||.++++.||..|...+. .++.||++||||++|++|+++
T Consensus 722 ~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~ 801 (837)
T 1kk8_A 722 ILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKL 801 (837)
T ss_dssp GGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999876653 48999999999999999999999999999999999999999998876 578999999999999999999
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHhhhhhh
Q 001002 906 ---CNGVITLQSFARGENTRRRHASLGKS 931 (1193)
Q Consensus 906 ---r~a~i~IQs~~Rg~~aRr~~~~~r~~ 931 (1193)
+.|+++||++||+|++||.|.||+..
T Consensus 802 ~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~ 830 (837)
T 1kk8_A 802 QDQRIGLSVIQRNIRKWLVLRNWQWWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 68999999999999999999999975
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=7.8e-208 Score=2028.96 Aligned_cols=795 Identities=39% Similarity=0.634 Sum_probs=727.2
Q ss_pred hccccccCCCCcccc-cccchhccCCcEEEEEcCCCCEEEEEEEeecCCeEEEEe-cCCcEEEEeCCCcccCCCCccCCc
Q 001002 134 VNEMKSAKSGEVEWE-DNLGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLL-SNGNVVKVSTGELLPANPDILEGV 211 (1193)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~~~np~~~~~~ 211 (1193)
+.+|+.++.+.-.-. .+.+|.. +.+||||+++++|..|+|++..|+.++|.+ ++|++++|+.+++.|+||+.++++
T Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~~--~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~~~ 85 (1184)
T 1i84_S 8 DEKFLFVDKNFVNNPLAQADWSA--KKLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKV 85 (1184)
T ss_dssp TGGGTSCCCCSCCCHHHHHHTTC--TTEEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGTTC
T ss_pred hHHHHhcCHHHHhhhhhcCCccc--CCeEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCcccccc
Confidence 456777766521110 1334554 689999999999999999999999999996 588999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhh
Q 001002 212 DDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMG 289 (1193)
Q Consensus 212 ~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~ 289 (1193)
+||+.|+||||++|||||+.||..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||+.|+.
T Consensus 86 ~Dl~~l~~l~e~~vl~~L~~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~ 165 (1184)
T 1i84_S 86 EDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQ 165 (1184)
T ss_dssp SBTTSSSCCCTTHHHHHHHHHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHH
T ss_pred chhhhhccccHHHHHHHHHHHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987654 89999999999999999
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC----------------CccHHHHHHhhhHHHHHhhcCcCCCCCCCC
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALGGG----------------SEGIEYEILQTNHILEAFGNAKTSRNDNSS 353 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~----------------~~~i~~~il~snpiLEAFGNAkT~~N~NSS 353 (1193)
+++||||||||||||||||++|+||+||++++++ .+.|+++|+++||||||||||||+||||||
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSS 245 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSS 245 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred cCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCcccc
Confidence 9999999999999999999999999999999875 247999999999999999999999999999
Q ss_pred ccccEEEEEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCC
Q 001002 354 RFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDG 433 (1193)
Q Consensus 354 RfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~ 433 (1193)
||||||+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+||+++ |..+++
T Consensus 246 Rfgk~~~i~f~~~g~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~-~~~~~~ 324 (1184)
T 1i84_S 246 RFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNG-HVPIPA 324 (1184)
T ss_dssp CSCEEEEEEECSSSCEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTS-SCCCTT
T ss_pred ccceeEEEEECCCCCEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCC-CcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 558999
Q ss_pred cchHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhc
Q 001002 434 VDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTH 513 (1193)
Q Consensus 434 ~dD~~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~ 513 (1193)
+||+++|..|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++
T Consensus 325 ~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~ 404 (1184)
T 1i84_S 325 QQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTP 404 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSC
T ss_pred CChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999997766677888899999999999999999999999999
Q ss_pred eeccCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhh
Q 001002 514 KIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYA 593 (1193)
Q Consensus 514 ~~~~~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINya 593 (1193)
++.+|++.+++++|++||.++||||||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||
T Consensus 405 ~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~ 484 (1184)
T 1i84_S 405 RIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYT 484 (1184)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHH
T ss_pred EEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986533456799999999999999999999999999
Q ss_pred hHHHHHHHHHhhhHHHHHHhhhcCcceeecccc-ChHHHHHHHhcC--CCccccccccccCCCCCChHHHHHHHHHHhCC
Q 001002 594 NERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKK--PLGVLSLLDEESNFPKATDLTFANKLKQHLGS 670 (1193)
Q Consensus 594 NErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~-dn~~~l~lie~~--p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 670 (1193)
||+||||||+|+|+.||++|.+|||+|++|+|. ||++|||||+++ |.|||+||||||++|++||.+|++||+++|++
T Consensus 485 nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~ 564 (1184)
T 1i84_S 485 NEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGN 564 (1184)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHhCC
Confidence 999999999999999999999999999999995 999999999973 34999999999999999999999999999999
Q ss_pred CCccccCC----CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCC-CCC------C
Q 001002 671 NSCFKGER----GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSP-KPA------A 738 (1193)
Q Consensus 671 ~~~f~~~~----~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~-~~~------~ 738 (1193)
||+|.+++ ...|+|+||||+|+|+++|||+||+|+|+++++.||++|+++++ .+|.......+. +.. .
T Consensus 565 ~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 644 (1184)
T 1i84_S 565 HAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSL 644 (1184)
T ss_dssp CTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTCCCC-----------
T ss_pred CCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhcccccccccccccccccccc
Confidence 99998775 47999999999999999999999999999999999999999876 588764321111 000 0
Q ss_pred CCCCCCCCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCcccc
Q 001002 739 SSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRM 818 (1193)
Q Consensus 739 ~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~ 818 (1193)
|..+.+..+.+.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|+
T Consensus 645 ~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~ 724 (1184)
T 1i84_S 645 PSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRI 724 (1184)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEE
T ss_pred CccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccc
Confidence 10001112345899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhccccccccC--CChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHH-HHHHHHHHHhh
Q 001002 819 RHQEFAGRYGVLLSEKQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRG 895 (1193)
Q Consensus 819 ~~~eF~~RY~~L~~~~~~~--~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~-aai~IQ~~~Rg 895 (1193)
+|.+|+.||++|.|...+. .|++..|..||..+++++..|++|+|||||+.|.+..||..|...+. .++.||++|||
T Consensus 725 ~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l~~~~~~iQ~~~Rg 804 (1184)
T 1i84_S 725 VFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRG 804 (1184)
T ss_dssp EHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876553 48899999999999999999999999999999999999999988775 67899999999
Q ss_pred hhHhHHhhhhh---hHHHHHHHHHHHHHHHHHHhhhhhh
Q 001002 896 YQARSRFRELC---NGVITLQSFARGENTRRRHASLGKS 931 (1193)
Q Consensus 896 ~laRk~y~~~r---~a~i~IQs~~Rg~~aRr~~~~~r~~ 931 (1193)
|++|++|.+++ .|+++||++||+|++||.|.|++..
T Consensus 805 ~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl~ 843 (1184)
T 1i84_S 805 YLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLF 843 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999984 7999999999999999999999875
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.2e-202 Score=1872.00 Aligned_cols=751 Identities=43% Similarity=0.715 Sum_probs=691.7
Q ss_pred CCcEEEEEcCCCCEEEEEEEee---cCCeEEEEecCCcEEEEeC----CCccc-CCCCccCCcCccccCCCCCchhHHHH
Q 001002 157 KKLRVWCRLEDGKWESGMIQST---SGDEAFVLLSNGNVVKVST----GELLP-ANPDILEGVDDLIQLSYLNEPSVLNN 228 (1193)
Q Consensus 157 ~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~LnE~svL~~ 228 (1193)
+|.+||+|+++++|..|+|++. +++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++||||
T Consensus 9 ~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~n 88 (795)
T 1w7j_A 9 KYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHN 88 (795)
T ss_dssp TTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHHHH
T ss_pred cCCEEEEECCCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHHHH
Confidence 4789999999999999999973 3456899999999999887 45777 69999999999999999999999999
Q ss_pred HHHHH-hcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCC
Q 001002 229 IQYRY-SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAG 305 (1193)
Q Consensus 229 L~~Ry-~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaG 305 (1193)
|+.|| .+++||||+|++|||||||+++|||+++++..|+++... ||||||||+.||+.|+++++|||||||||||||
T Consensus 89 L~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAG 168 (795)
T 1w7j_A 89 LKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAG 168 (795)
T ss_dssp HHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSS
T ss_pred HHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCC
Confidence 99999 999999999999999999999999999999999987654 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCC--ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccce
Q 001002 306 KTETAKFAMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSR 383 (1193)
Q Consensus 306 KTet~k~il~yL~~~~~~~--~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksR 383 (1193)
|||++|+||+||++++++. ..|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|++|||||||
T Consensus 169 KTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSR 248 (795)
T 1w7j_A 169 KTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGG
T ss_pred cchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccce
Confidence 9999999999999998764 48999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHH
Q 001002 384 VVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAM 463 (1193)
Q Consensus 384 Vv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~i 463 (1193)
||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++..||+|
T Consensus 249 Vv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~i 328 (795)
T 1w7j_A 249 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRI 328 (795)
T ss_dssp GTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEecCCHHHHHHHHHHHHHHHH
Q 001002 464 LAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIY 543 (1193)
Q Consensus 464 laAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rdalak~LY 543 (1193)
||||||||||+|...+++......+++.++.||.||||++++|.++||+|++.+++|.++++++++||.++||||||+||
T Consensus 329 laaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY 408 (795)
T 1w7j_A 329 LAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIY 408 (795)
T ss_dssp HHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCceEeecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999997665433333688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeec
Q 001002 544 GSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRV 623 (1193)
Q Consensus 544 ~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i 623 (1193)
++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|
T Consensus 409 ~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i 487 (795)
T 1w7j_A 409 ANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLI 487 (795)
T ss_dssp HHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9999999999999998754 346799999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC--CCceEEeecCccccccccchhh
Q 001002 624 EFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER--GRAFSIRHYAGEVPYDTNGFLE 700 (1193)
Q Consensus 624 ~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl~ 700 (1193)
+|.||++|||||+++ .|||+||||||++|++||.+|++||+++| ++|++|.+++ ...|+|+||||+|+|+++|||+
T Consensus 488 ~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 566 (795)
T 1w7j_A 488 DFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLE 566 (795)
T ss_dssp CCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHH
T ss_pred CccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHh
Confidence 999999999999987 99999999999999999999999999988 9999999875 5799999999999999999999
Q ss_pred hcCCcchHHHHHHHhhcc-HHHH-HHhhcccCCCC---CC---------CC--C--CCCCCCCCccccchHHHHHHHHHH
Q 001002 701 KNRDPLQTDIIQLLSSCT-CQVL-QLFASKMLKPS---PK---------PA--A--SSQPGALDTQKQSVGTKFKGQLFK 762 (1193)
Q Consensus 701 KN~D~l~~~~~~ll~~s~-~~~~-~lf~~~~~~~~---~~---------~~--~--~~~~~~~~~~~~tv~~~fk~qL~~ 762 (1193)
||+|+|+++++++|++|+ ++++ .+|.+.....+ .. .+ + +...++...+++||+++||.||+.
T Consensus 567 KNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~ 646 (795)
T 1w7j_A 567 KNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHL 646 (795)
T ss_dssp HHHCCCCHHHHHHHHTCSSCSHHHHTTC---------------------------------------CCHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHhccccHHHHHHhccccccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHH
Confidence 999999999999999999 8876 58865331110 00 00 0 000011234568999999999999
Q ss_pred HHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccCCChHH
Q 001002 763 LMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLS 842 (1193)
Q Consensus 763 Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~ 842 (1193)
||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|++......|+++
T Consensus 647 Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~ 726 (795)
T 1w7j_A 647 LMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQ 726 (795)
T ss_dssp HHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCHHH
T ss_pred HHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665559999
Q ss_pred HHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHH-HHHHHHHHHhhhhHhHHhhhhhhHH
Q 001002 843 ISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGV 909 (1193)
Q Consensus 843 ~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~-aai~IQ~~~Rg~laRk~y~~~r~a~ 909 (1193)
.|+.||..++++++.|++|+||||||.++++.||.+|...+. +++.||++||||++|++|+++|.|+
T Consensus 727 ~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 727 TCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998775 6889999999999999999998764
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.1e-201 Score=1902.93 Aligned_cols=788 Identities=35% Similarity=0.578 Sum_probs=707.3
Q ss_pred CCcEEEEEcCCCCEEEEEEEeecCCeEEEEec--CCcEEEEeCCCcccCCCCccCCcCccccCCCCCchhHHHHHHHHHh
Q 001002 157 KKLRVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 234 (1193)
Q Consensus 157 ~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~ 234 (1193)
+|.+|||||++++|.+|+|++..++.++|.+. +|++++++.+++.|+||+.++++|||+.|+||||++|||||+.||.
T Consensus 3 ~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry~ 82 (1052)
T 4anj_A 3 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYS 82 (1052)
T ss_dssp -CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHHc
Confidence 47899999999999999999999999998764 5889999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCceEecCCCCcCC-CCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHH
Q 001002 235 RDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1193)
Q Consensus 235 ~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k 311 (1193)
+|+||||+|++|||||||+.+| ||+++++..|+++... ||||||||+.||+.|+++++||||||||||||||||++|
T Consensus 83 ~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 83 KDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp TTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 9999999999999999999999 9999999999987654 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccceeeeccCCC
Q 001002 312 FAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGE 391 (1193)
Q Consensus 312 ~il~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gE 391 (1193)
+||+|||+++++...++++|+++||||||||||||++|||||||||||+|+||..|.|+||+|.+|||||||||.|++||
T Consensus 163 ~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gE 242 (1052)
T 4anj_A 163 FVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 242 (1052)
T ss_dssp HHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTC
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCC
Confidence 99999999998878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhcCCChHhHHhcCCCCCCCCccccCC--------------------------CccccCCcchHHHHHHHHH
Q 001002 392 RSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQS--------------------------ECLTIDGVDDAQNFHNLME 445 (1193)
Q Consensus 392 rnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~--------------------------~~~~~~~~dD~~~f~~l~~ 445 (1193)
||||||||||+|+++++++.|+|.++.+|+||+++ +|..++++||+++|..++.
T Consensus 243 RNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 243 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp CSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999985 4677899999999999999
Q ss_pred HHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCc---ceeecChHHHHHHHHHcCCCHHHHHHhHhhceec-----c
Q 001002 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ-----A 517 (1193)
Q Consensus 446 Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~---~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~-----~ 517 (1193)
||++|||+++++.+||+|||||||||||+|...++.+ .+.+.+.+.++.||.||||++++|.++||++.+. +
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~ 402 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGA 402 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC--------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeeccccc
Confidence 9999999999999999999999999999998654332 3455677899999999999999999999998874 5
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHH
Q 001002 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1193)
Q Consensus 518 ~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErL 597 (1193)
+++.+.++++++||.++||||||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||+|
T Consensus 403 ~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkL 480 (1052)
T 4anj_A 403 KGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 480 (1052)
T ss_dssp -----CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999864 3457999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC
Q 001002 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 677 (1193)
Q Consensus 598 q~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~ 677 (1193)
||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|++|..+
T Consensus 481 Qq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 560 (1052)
T 4anj_A 481 QQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIP 560 (1052)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECG
T ss_pred HHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C------------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCC
Q 001002 678 R------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGA 744 (1193)
Q Consensus 678 ~------------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~ 744 (1193)
+ ...|+|+||||+|+|+++|||+||+|+|++++++||++|+++++ .+|.+........ +.++
T Consensus 561 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~~-----~~~~ 635 (1052)
T 4anj_A 561 RKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDT-----KQKA 635 (1052)
T ss_dssp GGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------
T ss_pred cccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhccccccccc-----cCCC
Confidence 2 24699999999999999999999999999999999999999876 5886533211110 1111
Q ss_pred CCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHH
Q 001002 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1193)
Q Consensus 745 ~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 824 (1193)
....+.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 636 ~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~eF~ 715 (1052)
T 4anj_A 636 GKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELY 715 (1052)
T ss_dssp ----CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHHHH
Confidence 13346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHHHHHHHHHHhhhhHhHHhhh
Q 001002 825 GRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFRE 904 (1193)
Q Consensus 825 ~RY~~L~~~~~~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~aai~IQ~~~Rg~laRk~y~~ 904 (1193)
+||++|+|......|++..|+.||+.+++++..|++|+||||||.++++.||..|...+..++.+|..+|||++|++|++
T Consensus 716 ~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~~k 795 (1052)
T 4anj_A 716 NMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKK 795 (1052)
T ss_dssp HHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887778999999999999999999999999999999999999999998887765555556899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 905 LCNGVITLQSFARGENTRR--RHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 905 ~r~a~i~IQs~~Rg~~aRr--~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
++.+++.||..+|++..|+ .|.|++.. .++.-+++.||++..+|+|.
T Consensus 796 ~~~~a~~i~~~~r~~~~r~~~~~~w~~l~-------------~~v~pll~~~~~~~~~r~~~ 844 (1052)
T 4anj_A 796 VQWCSLSVIKLKNKIKYRAEAVSKGEELF-------------TGVVPILVELDGDVNGHKFS 844 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------SSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHH-------------HhhhhhHHHHHHHHHhhhhh
Confidence 9999999999888776655 55666654 23344455666666666654
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=4e-200 Score=1843.16 Aligned_cols=745 Identities=38% Similarity=0.644 Sum_probs=662.4
Q ss_pred hhhccccccCCCCcccccccchhccCCcEEEEEcCCCCEEEEEEEeecCCeEEEEecCCcEEEEeCCCcccCCCCccCCc
Q 001002 132 LEVNEMKSAKSGEVEWEDNLGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGV 211 (1193)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~ 211 (1193)
.+..+||+++.++..-..+.+|.. +.+||||+++++|..|+|++.+|+.++|++++|++++|+.+++.|+||+.++++
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~vWv~d~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~ 87 (783)
T 4db1_A 10 GAAAPYLRKSEKERLEAQTRPFDL--KKDVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKI 87 (783)
T ss_dssp GGGGGGTCCCHHHHHHHHHSCCCT--TTEEEEECSSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEECCCGGGTTC
T ss_pred CchhhHhccCHHHHHHhhccCCcC--CCEEEEECCCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccCCCCccCCc
Confidence 355688888888777778888887 579999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHHHHhh
Q 001002 212 DDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMMG 289 (1193)
Q Consensus 212 ~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m~~ 289 (1193)
|||+.|++|||++|||||+.||.+++||||+|+||||||||+++|||+++++..|+++.. .||||||||+.||+.|++
T Consensus 88 eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~ 167 (783)
T 4db1_A 88 EDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLT 167 (783)
T ss_dssp SBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHH
T ss_pred chhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998764 389999999999999999
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC-----------ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccE
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~-----------~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~ 358 (1193)
+++||||||||||||||||++|+||+|||+++++. ..|+++|+++||||||||||||+|||||||||||
T Consensus 168 ~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~ 247 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKF 247 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEE
T ss_pred hCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCcccee
Confidence 99999999999999999999999999999987532 4699999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCC-CCCCCCccccCCCccccCCcchH
Q 001002 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDA 437 (1193)
Q Consensus 359 i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~ 437 (1193)
|+|+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++++.|+| .++.+|+||+++ +..++++||+
T Consensus 248 i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g-~~~~~~~dD~ 326 (783)
T 4db1_A 248 IRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQG-ETTVASIDDA 326 (783)
T ss_dssp EEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSS-CCCCTTCCHH
T ss_pred EEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCC-CcccCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999 579999999997 5689999999
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceecc
Q 001002 438 QNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 517 (1193)
Q Consensus 438 ~~f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~ 517 (1193)
++|..++.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||+|++.+
T Consensus 327 ~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~ 406 (783)
T 4db1_A 327 EELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKV 406 (783)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEEe
Confidence 99999999999999999999999999999999999999987777788899999999999999999999999999999999
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHH
Q 001002 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1193)
Q Consensus 518 ~~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErL 597 (1193)
|+|.++++++++||.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+|
T Consensus 407 ~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkL 485 (783)
T 4db1_A 407 GNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKL 485 (783)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999864 33457999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhhcCcceeecccc-ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccc
Q 001002 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFK 675 (1193)
Q Consensus 598 q~~f~~~~f~~eq~eY~~EgI~~~~i~f~-dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~ 675 (1193)
||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |.|||+||||||++|++||.+|++||++.| ++|++|.
T Consensus 486 Qq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~ 564 (783)
T 4db1_A 486 QQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQ 564 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHHHHTTTCTTEE
T ss_pred HHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999999995 99999999996 899999999999999999999999998765 8999998
Q ss_pred cCC------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCC-CCCCc
Q 001002 676 GER------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQP-GALDT 747 (1193)
Q Consensus 676 ~~~------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~-~~~~~ 747 (1193)
+++ ...|+|+||||+|+|+++|||+||+|+|++++++||++|+++++ .+|.+.....+ +..+.+. ....+
T Consensus 565 ~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~--~~~~~~~~~~~~~ 642 (783)
T 4db1_A 565 KPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADA--PIEKGKGKAKKGS 642 (783)
T ss_dssp CCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC-------------------
T ss_pred CCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccccc--cccCccCCCCcCC
Confidence 764 36899999999999999999999999999999999999999876 68976432211 0000000 00123
Q ss_pred cccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhh
Q 001002 748 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRY 827 (1193)
Q Consensus 748 ~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY 827 (1193)
.++||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||
T Consensus 643 ~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY 722 (783)
T 4db1_A 643 SFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRY 722 (783)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEEEC-------
T ss_pred CCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccCcHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccC---CChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHH
Q 001002 828 GVLLSEKQLS---QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVL 883 (1193)
Q Consensus 828 ~~L~~~~~~~---~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l 883 (1193)
++|+|...+. .|++..|+.||+.+++++..|++|+||||||.++++.||.+|.+.+
T Consensus 723 ~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l 781 (783)
T 4db1_A 723 RILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERL 781 (783)
T ss_dssp -------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC----
T ss_pred HHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHh
Confidence 9999876643 3788999999999999999999999999999999999999998764
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=7e-198 Score=1881.38 Aligned_cols=769 Identities=38% Similarity=0.629 Sum_probs=713.6
Q ss_pred CcEEEEEcCCCCEEEEEEEeecCCeEEEEecC-CcEEEEeCCCcccCCCCccCCcCccccCCCCCchhHHHHHHHHHhcC
Q 001002 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSN-GNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRD 236 (1193)
Q Consensus 158 ~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~-g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~ 236 (1193)
+.+||||+++++|..|+|++.+|+.++|.+.+ |++++|+.+++.|+||+.++++|||+.|++|||++|||||+.||..+
T Consensus 8 ~~~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~ 87 (995)
T 2ycu_A 8 RRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRERYYSG 87 (995)
T ss_dssp GCEEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999875 56999999999999999999999999999999999999999999999
Q ss_pred CccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHH
Q 001002 237 MIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 237 ~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il 314 (1193)
+||||+|+||||||||+++|||+++++..|+++... ||||||||+.||+.|+++++||||||||||||||||++|+||
T Consensus 88 ~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 88 LIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp CCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHH
T ss_pred ceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 999999999999999999999999999999987654 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC---------ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccceee
Q 001002 315 QYLAALGGGS---------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVV 385 (1193)
Q Consensus 315 ~yL~~~~~~~---------~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv 385 (1193)
+||++++++. +.|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|.+|||||||||
T Consensus 168 ~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv 247 (995)
T 2ycu_A 168 QYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAI 247 (995)
T ss_dssp HHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGT
T ss_pred HHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeee
Confidence 9999998753 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHHHHHHHhhhcCChhhHHHHHHHHH
Q 001002 386 QLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLA 465 (1193)
Q Consensus 386 ~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~~~~e~~~i~~ila 465 (1193)
.|++||||||||||||+|+++++++.|+|.++.+|+||++++ ..+++ ||+++|..++.||++|||+++++..||+|||
T Consensus 248 ~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ila 325 (995)
T 2ycu_A 248 RQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVS 325 (995)
T ss_dssp CCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 57888 9999999999999999999999999999999
Q ss_pred HHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceEEecCCHHHHHHHHHHHHHHHHHH
Q 001002 466 AVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGS 545 (1193)
Q Consensus 466 AILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rdalak~LY~~ 545 (1193)
||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||+|++.+|+|.+++++|++||.++||||||+||++
T Consensus 326 aILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~ 405 (995)
T 2ycu_A 326 AVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYER 405 (995)
T ss_dssp HHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999877667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHHHhhhHHHHHHhhhcCcceeeccc
Q 001002 546 LFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF 625 (1193)
Q Consensus 546 LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f 625 (1193)
||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|
T Consensus 406 LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f 485 (995)
T 2ycu_A 406 LFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDF 485 (995)
T ss_dssp HHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCcccccc
Confidence 99999999999998644325679999999999999999999999999999999999999999999999999999999999
Q ss_pred -cChHHHHHHHhc--CCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC----CCceEEeecCccccccccch
Q 001002 626 -EDNEECLNLIEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYAGEVPYDTNGF 698 (1193)
Q Consensus 626 -~dn~~~l~lie~--~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~----~~~F~I~HyaG~V~Y~~~gf 698 (1193)
.||++|||||++ +|.|||+||||||++|++||.+|++||+..+++|++|.+++ ...|+|+||||+|+|+++||
T Consensus 486 ~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gf 565 (995)
T 2ycu_A 486 GLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEW 565 (995)
T ss_dssp SCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTH
T ss_pred ccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccch
Confidence 599999999998 49999999999999999999999999999889999998775 47999999999999999999
Q ss_pred hhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCC-CC-C-C--CCCccccchHHHHHHHHHHHHHHHhccCC
Q 001002 699 LEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAAS-SQ-P-G--ALDTQKQSVGTKFKGQLFKLMHQLENTRP 772 (1193)
Q Consensus 699 l~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~-~~-~-~--~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~ 772 (1193)
|+||+|+|+++++.||++|+++++ .+|.......+.....| .. + | +......||+++||.||+.||++|++|+|
T Consensus 566 leKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~p 645 (995)
T 2ycu_A 566 LMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNP 645 (995)
T ss_dssp HHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEE
T ss_pred hhhccccccHHHHHHHHhCcHHHHHHHhhcccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999876 58875431111000000 00 0 1 11234689999999999999999999999
Q ss_pred eeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccccccC--CChHHHHHHHHHH
Q 001002 773 HFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS--QDPLSISVAVLQQ 850 (1193)
Q Consensus 773 hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~iL~~ 850 (1193)
|||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.+...+. .|++..|..||..
T Consensus 646 hfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~ 725 (995)
T 2ycu_A 646 SFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQA 725 (995)
T ss_dssp EEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCC
T ss_pred ceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876643 4788899999999
Q ss_pred cCCCccccccCceeeeeecchhhhhhhhhhhHHHH------HHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001002 851 FNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA------IIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1193)
Q Consensus 851 ~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~a------ai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~ 924 (1193)
+++++..|++|+||||||.++++.||..|...+.. +..++.++|+..++..++..+.+++.||++||++.+++.
T Consensus 726 ~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~ 805 (995)
T 2ycu_A 726 LELDPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 805 (995)
T ss_dssp SSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCCChhheeecceEEEEecchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887752 446788999999999999999999999999999998888
Q ss_pred Hhhh
Q 001002 925 HASL 928 (1193)
Q Consensus 925 ~~~~ 928 (1193)
+...
T Consensus 806 ~ekp 809 (995)
T 2ycu_A 806 TEKP 809 (995)
T ss_dssp HTHH
T ss_pred Hhcc
Confidence 7654
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=7.5e-196 Score=1859.24 Aligned_cols=765 Identities=42% Similarity=0.691 Sum_probs=703.8
Q ss_pred hhccccccCCCCcccccccchhccCCcEEE---EEcCCCCEEEEEEEeecCCeEEEEecCCcEEEEeCCCcccCCCCccC
Q 001002 133 EVNEMKSAKSGEVEWEDNLGYFIKKKLRVW---CRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILE 209 (1193)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vw---~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~ 209 (1193)
+..+|+..+.++..-.+. +|.. +.+|| +|+++++|..|+|++.+|+.++|.+++|++++|+.+++.|+||+.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~-~~~~--~~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~ 86 (1010)
T 1g8x_A 10 DYHKYLKVKQGDSDLFKL-TVSD--KRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD 86 (1010)
T ss_dssp HHHHHHSCCCCSCCSSSC-CCCC--CCEEEECSSTTCTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTCCBCCCGGGT
T ss_pred chhhhHhcchhhhhHhhc-chhc--CCceeCccCcCcccCeeEEEEEEecCCeEEEEecCCcEEEecHHhccccCcchhc
Confidence 345677777664211111 3443 67999 99999999999999999999999999999999999999999999999
Q ss_pred CcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHHHH
Q 001002 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1193)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1193)
+++||+.|++|||++|||||+.||..++||||+|++|||||||+++|||+++++..|+++... ||||||||+.||+.|
T Consensus 87 ~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m 166 (1010)
T 1g8x_A 87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166 (1010)
T ss_dssp TCSBGGGCSSCCHHHHHHHHHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhcccHHHHHHHHHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987654 899999999999999
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC-----ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEE
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIH 362 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~-----~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~ 362 (1193)
+.+++||||||||||||||||++|+||+||++++++. +.|+++|+++||||||||||||+||||||||||||+|+
T Consensus 167 ~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~ 246 (1010)
T 1g8x_A 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQ 246 (1010)
T ss_dssp HHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEE
T ss_pred HhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEE
Confidence 9999999999999999999999999999999998753 47999999999999999999999999999999999999
Q ss_pred EcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCccccCCCccccCCcchHHHHHH
Q 001002 363 FSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHN 442 (1193)
Q Consensus 363 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 442 (1193)
||.+|.|+||+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..
T Consensus 247 F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~ 326 (1010)
T 1g8x_A 247 FNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKI 326 (1010)
T ss_dssp ECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHH
T ss_pred ECCCCCCcceEEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCCceE
Q 001002 443 LMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSI 522 (1193)
Q Consensus 443 l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i 522 (1193)
++.||++|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++||+|++.+|++.+
T Consensus 327 ~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v 405 (1010)
T 1g8x_A 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLV 405 (1010)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-CccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeE
Confidence 99999999999999999999999999999999997655 67788899999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHHHH
Q 001002 523 AKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFN 602 (1193)
Q Consensus 523 ~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~f~ 602 (1193)
++++|++||.++||||||+||++||+|||.+||.+|.+.. ...+||||||||||+|+.|||||||||||||+|||+||
T Consensus 406 ~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~ 483 (1010)
T 1g8x_A 406 AQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFN 483 (1010)
T ss_dssp ECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999998643 56799999999999999999999999999999999999
Q ss_pred HhhhHHHHHHhhhcCcceeecccc-ChHHHHHHHhc-CCCccccccccccCCCCCChHHHHHHHHHHhC-CCCccccCC-
Q 001002 603 RHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKLKQHLG-SNSCFKGER- 678 (1193)
Q Consensus 603 ~~~f~~eq~eY~~EgI~~~~i~f~-dn~~~l~lie~-~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~-~~~~f~~~~- 678 (1193)
+|+|+.||+||.+|||+|+.|+|. ||++|||||++ +|.|||+||||||++|++||.+|++|++++++ +||+|.+++
T Consensus 484 ~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~f~~~~~ 563 (1010)
T 1g8x_A 484 HHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRF 563 (1010)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHHHTTTCTTEECCTT
T ss_pred HHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHHhcCCCCCcccCCC
Confidence 999999999999999999999995 99999999998 59999999999999999999999999999999 999998875
Q ss_pred -CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchHHHH
Q 001002 679 -GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKF 756 (1193)
Q Consensus 679 -~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f 756 (1193)
...|+|+||||+|+|+++|||+||+|+|+++++.||++|+++++ .+|..... .+ + .+....+.||+++|
T Consensus 564 ~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~~-~~-~-------~~k~~~~~tv~~~f 634 (1010)
T 1g8x_A 564 SKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNI-AS-R-------AKKGANFITVAAQY 634 (1010)
T ss_dssp CSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHHH-HS-C-------CCCSSSCCCHHHHH
T ss_pred CCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhccccc-cc-C-------CCCCCCCCchHHHH
Confidence 36999999999999999999999999999999999999999875 68875320 00 0 00122458999999
Q ss_pred HHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhcccccccc
Q 001002 757 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1193)
Q Consensus 757 k~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~ 836 (1193)
+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.+. .+
T Consensus 635 k~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~-~~ 713 (1010)
T 1g8x_A 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPN-VP 713 (1010)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHHGGGSTT-CC
T ss_pred HHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHHHHhCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 43
Q ss_pred --CCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHH-HHHHHHHHhhhhHhHHhhhhhhHHHHHH
Q 001002 837 --SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCNGVITLQ 913 (1193)
Q Consensus 837 --~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~a-ai~IQ~~~Rg~laRk~y~~~r~a~i~IQ 913 (1193)
..|++..|..||..+++++..|++|+||||||.+++..||.+|...+.. ++.||-..|+ ..++
T Consensus 714 ~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~a--------------~~L~ 779 (1010)
T 1g8x_A 714 RDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRA--------------NELV 779 (1010)
T ss_dssp TTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 3489999999999999999999999999999999999999999988865 4455533222 2345
Q ss_pred HHHHHHHHHHHHhh
Q 001002 914 SFARGENTRRRHAS 927 (1193)
Q Consensus 914 s~~Rg~~aRr~~~~ 927 (1193)
.++|+..++...+.
T Consensus 780 ~WIr~kqa~l~~r~ 793 (1010)
T 1g8x_A 780 QWINDKQASLESRD 793 (1010)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhh
Confidence 56666666544433
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2.6e-197 Score=1812.10 Aligned_cols=737 Identities=42% Similarity=0.710 Sum_probs=644.8
Q ss_pred hhhccccccCCCC-cccccccchhccCCcEEEEEcC---CCCEEEEEEEeecCCeEEEEecCCcEEEEeCCCcccCCCCc
Q 001002 132 LEVNEMKSAKSGE-VEWEDNLGYFIKKKLRVWCRLE---DGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPANPDI 207 (1193)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vw~~~~---~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~ 207 (1193)
.+..+|+..+.++ ..-..+.+ .+.+||||++ +++|..|+|++..++.++|+.++|++++|+.+++.++||+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~----~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~ 84 (770)
T 1w9i_A 9 SDYHKYLKVKQGDSDLFKLTVS----DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIK 84 (770)
T ss_dssp SHHHHHHSCCCCC--------------CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEECCCGG
T ss_pred cchhhhhhcccchhHHhhhhcc----CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhccccCccc
Confidence 3456778877775 33222222 4889999999 89999999999999999999889999999999999999999
Q ss_pred cCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCCC--CCchhhHHHHHHH
Q 001002 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1193)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1193)
+++++||+.|++|||++|||||+.||.+++||||+|++|||||||+++|||+++++..|+++... ||||||||+.||+
T Consensus 85 ~~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~ 164 (770)
T 1w9i_A 85 FDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYR 164 (770)
T ss_dssp GTTCSBGGGCSCCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHH
T ss_pred ccchhhhhhhccCCHHHHHHHHHHHHhcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987654 8999999999999
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC-----ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEE
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 360 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~~~-----~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 360 (1193)
.|+++++||||||||||||||||++|+||+||++++++. ..|+++|+++||||||||||||+||||||||||||+
T Consensus 165 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~ 244 (770)
T 1w9i_A 165 SMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIE 244 (770)
T ss_dssp HHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEE
T ss_pred HHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEE
Confidence 999999999999999999999999999999999998753 479999999999999999999999999999999999
Q ss_pred EEEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCCCCCCCcc-ccCCCccccCCcchHHH
Q 001002 361 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNY-LNQSECLTIDGVDDAQN 439 (1193)
Q Consensus 361 l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~~~~~y~y-L~~~~~~~~~~~dD~~~ 439 (1193)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+| |+++ |..++++||+++
T Consensus 245 i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g-~~~~~~~dD~~~ 323 (770)
T 1w9i_A 245 IQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSG-CVDIKGVSDSEE 323 (770)
T ss_dssp EEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSS-CCCCTTCCHHHH
T ss_pred EEECCCCCEeeeEEEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCC-ccccCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7765 788999999999
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeeeCCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceeccCC
Q 001002 440 FHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 519 (1193)
Q Consensus 440 f~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~ 519 (1193)
|..++.||++|||+++++..||+|||||||||||+|. .++++.+.+.+.+.++.||.||||++++|.++|++|++.+|+
T Consensus 324 f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~-~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~ 402 (770)
T 1w9i_A 324 FKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE-KGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGR 402 (770)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCE-ECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEe-cCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCC
Confidence 9999999999999999999999999999999999999 556677889999999999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHH
Q 001002 520 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1193)
Q Consensus 520 e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~ 599 (1193)
|.+++++|++||.++||||||+||++||+|||.+||.+|..... ..+||||||||||+|+.|||||||||||||+|||
T Consensus 403 e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~--~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq 480 (770)
T 1w9i_A 403 DLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK--AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQ 480 (770)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC--SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHH
T ss_pred eeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeeeeccCccccccccCCHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999986432 6899999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhcCcceeecccc-ChHHHHHHHhc-CCCccccccccccCCCCCChHHHHHHH-HHHhCCCCcccc
Q 001002 600 HFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCFKG 676 (1193)
Q Consensus 600 ~f~~~~f~~eq~eY~~EgI~~~~i~f~-dn~~~l~lie~-~p~Gil~lLdee~~~p~~td~~f~~kl-~~~~~~~~~f~~ 676 (1193)
+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ +|.|||+||||||++|++||.+|++|| .+++++|++|.+
T Consensus 481 ~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~~~~~~~~~f~~ 560 (770)
T 1w9i_A 481 FFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560 (770)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHHHHTTTSTTEEC
T ss_pred HHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHHHhcCCCCCccC
Confidence 999999999999999999999999995 99999999998 499999999999999999999999996 567889999988
Q ss_pred CCC--CceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCccccchH
Q 001002 677 ERG--RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVG 753 (1193)
Q Consensus 677 ~~~--~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 753 (1193)
++. ..|+|+||||+|+|+++|||+||+|+|+++++.+|++|+++++ .+|....+. +. .+......||+
T Consensus 561 p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~-~~--------~~k~~~~~Tv~ 631 (770)
T 1w9i_A 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIA-SR--------AKKGANFITVA 631 (770)
T ss_dssp CSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCHHHH-CC--------CEETTEECCHH
T ss_pred CCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhccCCC-CC--------CCCCCCCcchh
Confidence 763 7999999999999999999999999999999999999999875 688754310 00 00122358999
Q ss_pred HHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhhhccccc
Q 001002 754 TKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 833 (1193)
Q Consensus 754 ~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~ 833 (1193)
++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 632 ~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~- 710 (770)
T 1w9i_A 632 AQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAP- 710 (770)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-----------
T ss_pred HHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC--CChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHHH
Q 001002 834 KQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAI 886 (1193)
Q Consensus 834 ~~~~--~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~aa 886 (1193)
..+. .|++..|+.||+.+++++..|++|+||||||.++++.||.+|.+.+..+
T Consensus 711 ~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~ 765 (770)
T 1w9i_A 711 NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDYK 765 (770)
T ss_dssp -------------------------CCCCCSSEEEECTTTTTC------------
T ss_pred ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHHH
Confidence 4432 4788999999999999999999999999999999999999999887654
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=5.1e-196 Score=1815.31 Aligned_cols=731 Identities=37% Similarity=0.616 Sum_probs=662.8
Q ss_pred EEEEEcCCCCEEEEEEEeecCCeEEEEec--CCcEEEEeCCCcccCCCCccCCcCccccCCCCCchhHHHHHHHHHhcCC
Q 001002 160 RVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDM 237 (1193)
Q Consensus 160 ~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~ 237 (1193)
+||+|+++++|..|+|++..++.++|.+. +|++++|+.+++.|+||+.++++|||+.|++|||++|||||+.||.+++
T Consensus 2 ~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~ 81 (784)
T 2v26_A 2 PVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDR 81 (784)
T ss_dssp CEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcCc
Confidence 69999999999999999999999999864 6889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceEecCCCCcC-CCCChHHHHHHhccCCC--CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHH
Q 001002 238 IYSKAGPVLIAVNPFKAV-PIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 238 iYT~~G~iLiavNP~k~l-~~y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il 314 (1193)
||||+|++|||||||+++ |||+++++..|+++... ||||||||++||+.|+++++||||||||||||||||++|+||
T Consensus 82 IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 82 IYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp CEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 999999999999999999 59999999999988654 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccceeeeccCCCCcc
Q 001002 315 QYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSY 394 (1193)
Q Consensus 315 ~yL~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnf 394 (1193)
+||++++++...|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|.+|||||||||.|++|||||
T Consensus 162 ~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 241 (784)
T 2v26_A 162 RYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNY 241 (784)
T ss_dssp HHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSB
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcc
Confidence 99999987666899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCChHhHHhcCCCCCCCCccccCCCc--------------------------cccCCcchHHHHHHHHHHHh
Q 001002 395 HIFYQLCAGAPSFLKERLNLKVANDYNYLNQSEC--------------------------LTIDGVDDAQNFHNLMEALD 448 (1193)
Q Consensus 395 HIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~--------------------------~~~~~~dD~~~f~~l~~Al~ 448 (1193)
|||||||+|+++++++.|+|.++.+|+||+++.+ ..++++||+++|..++.||+
T Consensus 242 HIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~ 321 (784)
T 2v26_A 242 HIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMK 321 (784)
T ss_dssp HHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999753 24568999999999999999
Q ss_pred hhcCChhhHHHHHHHHHHHHHhcCceeeeeCC-Ccceee--cChHHHHHHHHHcCCCHHHHHHhHhhceec-----cCCc
Q 001002 449 IVLIRKEDREQTFAMLAAVLWLGNISFQVIDN-ENHVEV--IADEAVTTAAMLMGCSSDELMLALSTHKIQ-----AGKD 520 (1193)
Q Consensus 449 ~lg~~~~e~~~i~~ilaAILhLGni~F~~~~~-~~~~~~--~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~-----~~~e 520 (1193)
+|||+++++..||+|||||||||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++||+|++. ++++
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge 401 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGT 401 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC----------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCC
Confidence 99999999999999999999999999997433 233444 467899999999999999999999999987 6789
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhhhhHHHHHH
Q 001002 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 600 (1193)
Q Consensus 521 ~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNErLq~~ 600 (1193)
.++++++++||.++||||||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||+|||+
T Consensus 402 ~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~ 479 (784)
T 2v26_A 402 VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 479 (784)
T ss_dssp -CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999754 3457999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC--
Q 001002 601 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER-- 678 (1193)
Q Consensus 601 f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~~~-- 678 (1193)
||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|++|..++
T Consensus 480 F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 480 FNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp HHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred HHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886543
Q ss_pred ----------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCCCCCc
Q 001002 679 ----------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDT 747 (1193)
Q Consensus 679 ----------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~ 747 (1193)
...|+|+||||+|+|+++|||+||+|+|+++++.||++|+++++ .+|.......+. + +..+...
T Consensus 560 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~~~~----~-~~~~~~~ 634 (784)
T 2v26_A 560 KLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKD----T-KQKAGKL 634 (784)
T ss_dssp SSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC---------------------C
T ss_pred cccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHcccccccccC----c-ccCCCCC
Confidence 24899999999999999999999999999999999999999876 588754211110 0 0011123
Q ss_pred cccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhHHHhh
Q 001002 748 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRY 827 (1193)
Q Consensus 748 ~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY 827 (1193)
.+.||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||
T Consensus 635 ~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY 714 (784)
T 2v26_A 635 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMY 714 (784)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCChHHHHHHHHHHcCCCccccccCceeeeeecchhhhhhhhhhhHHHHHHHHHHHHhhhh
Q 001002 828 GVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQ 897 (1193)
Q Consensus 828 ~~L~~~~~~~~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g~l~~LE~~R~~~l~aai~IQ~~~Rg~l 897 (1193)
++|+|......|++..|+.||..+++++.+|++|+||||||.|+++.||..+.........|++..|+|+
T Consensus 715 ~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 715 KKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp GGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred hhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 9999977666799999999999999999999999999999999999999987655545555667888874
No 11
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=3.5e-189 Score=1732.28 Aligned_cols=663 Identities=39% Similarity=0.648 Sum_probs=609.2
Q ss_pred cCCcCccccCCCCCchhHHHHHHHHHhcCCccccCCCceEecCCCCcCCCCChHHHHHHhccCC--CCCchhhHHHHHHH
Q 001002 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYN 285 (1193)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~--~~PHiyavA~~Ay~ 285 (1193)
.++++||+.|++|||++|||||+.||.+++||||+|++|||||||+++|+|+++++..|+++.. .||||||||++||+
T Consensus 7 ~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~ 86 (697)
T 1lkx_A 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYR 86 (697)
T ss_dssp --CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHH
T ss_pred ccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999998765 38999999999999
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC-CC---ccHHHHHHhhhHHHHHhhcCcCCCCCCCCccccEEEE
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG-GS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~-~~---~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 361 (1193)
.|+++++||||||||||||||||++|+||+||+++++ +. ..|+++|+++||||||||||||+||||||||||||+|
T Consensus 87 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i 166 (697)
T 1lkx_A 87 SMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEM 166 (697)
T ss_dssp HHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEE
T ss_pred HHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEE
Confidence 9999999999999999999999999999999999987 32 2689999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeecccceeeeccCCCCcchhHHHHhcCCChHhHHhcCCC-CCCCCccccCCCccccCCcchHHHH
Q 001002 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLK-VANDYNYLNQSECLTIDGVDDAQNF 440 (1193)
Q Consensus 362 ~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~G~~~~~~~~l~L~-~~~~y~yL~~~~~~~~~~~dD~~~f 440 (1193)
+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++++.|+|. ++.+|+||++++|..++++||+++|
T Consensus 167 ~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f 246 (697)
T 1lkx_A 167 QFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEF 246 (697)
T ss_dssp EECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHH
T ss_pred EECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCceeeee----CCCcceeecChHHHHHHHHHcCCCHHHHHHhHhhceec
Q 001002 441 HNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVI----DNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ 516 (1193)
Q Consensus 441 ~~l~~Al~~lg~~~~e~~~i~~ilaAILhLGni~F~~~----~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~ 516 (1193)
..++.||++|||+++++..||+|||||||||||+|... ++.+.+.+.+.+.++.||.||||++++|.++||+|++.
T Consensus 247 ~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 326 (697)
T 1lkx_A 247 KIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIS 326 (697)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEe
Confidence 99999999999999999999999999999999999872 22357889999999999999999999999999999999
Q ss_pred cC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccceeEEecccCcccCCCCCHHHHHhhh
Q 001002 517 AG----KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINY 592 (1193)
Q Consensus 517 ~~----~e~i~~~l~~~qA~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINy 592 (1193)
++ +|.++++++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.||||||||||
T Consensus 327 ~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINy 405 (697)
T 1lkx_A 327 TGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNINF 405 (697)
T ss_dssp --------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHHH
T ss_pred eccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHHh
Confidence 99 99999999999999999999999999999999999999998643 34679999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHHhhhcCcceeeccccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCC
Q 001002 593 ANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNS 672 (1193)
Q Consensus 593 aNErLq~~f~~~~f~~eq~eY~~EgI~~~~i~f~dn~~~l~lie~~p~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~ 672 (1193)
|||+|||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|+
T Consensus 406 ~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~~~~~ 485 (697)
T 1lkx_A 406 CNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNP 485 (697)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSST
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC--------CCceEEeecCccccccccchhhhcCCcchHHHHHHHhhccHHHH-HHhhcccCCCCCCCCCCCCCC
Q 001002 673 CFKGER--------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPG 743 (1193)
Q Consensus 673 ~f~~~~--------~~~F~I~HyaG~V~Y~~~gfl~KN~D~l~~~~~~ll~~s~~~~~-~lf~~~~~~~~~~~~~~~~~~ 743 (1193)
+|.+++ ...|+|+||||+|+|+++|||+||+|+|+++++++|++|+++++ .+|......
T Consensus 486 ~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~~~~~------------ 553 (697)
T 1lkx_A 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPE------------ 553 (697)
T ss_dssp TEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-----------------
T ss_pred ccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhccccccc------------
Confidence 997642 47899999999999999999999999999999999999999876 588643210
Q ss_pred CCCccccchHHHHHHHHHHHHHHHhccCCeeeEecCCCCCCCCCccchhhHhhhhcccCcceeeeeeccCCccccchhhH
Q 001002 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1193)
Q Consensus 744 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 823 (1193)
+...+..||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|
T Consensus 554 ~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF 633 (697)
T 1lkx_A 554 DSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRF 633 (697)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccHHHH
Confidence 01223579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccccC--CChHHHHHHHHHHcCCCccccccCceeeeeecc-hhhhhhhhhhhHH
Q 001002 824 AGRYGVLLSEKQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRRKQVL 883 (1193)
Q Consensus 824 ~~RY~~L~~~~~~~--~d~~~~~~~iL~~~~i~~~~yqiGkTKVFlr~g-~l~~LE~~R~~~l 883 (1193)
+.||++|++...+. .|+++.|+.||..+++++..|++|+||||||.+ .+..||.+|..++
T Consensus 634 ~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 634 YNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp HTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred HHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 99999999876542 478899999999999999999999999999996 7899999998654
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.71 E-value=2.2e-16 Score=204.70 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHh
Q 001002 1100 GSLTAVNHLTKEFEQRRQNFDDDAKALIEI 1129 (1193)
Q Consensus 1100 ~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ 1129 (1193)
.+++++++|.+|...++|+.++++..+.+.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999998555443
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.31 E-value=5.8e-12 Score=166.77 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=46.9
Q ss_pred hHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 897 QARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 897 laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
+...+-..+...++.||++||||++|+.|.+++.. +.|+++||+.||+|++++.|.
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~------------~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ------------LESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhH
Confidence 44444556668899999999999999999988753 578999999999999998865
No 14
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.94 E-value=9.8e-10 Score=93.33 Aligned_cols=50 Identities=32% Similarity=0.479 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhhHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 001002 882 VLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKS 931 (1193)
Q Consensus 882 ~l~aai~IQ~~~Rg~laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~ 931 (1193)
...+++.||++||||++|+.|..++.++++||++|||+++|+.|..++..
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~ 53 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRT 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999998875
No 15
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.5e-08 Score=81.24 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhHhHHhhhhhh--HHHHHHHHHHHHHHHHHH
Q 001002 885 AIIRLQKCFRGYQARSRFRELCN--GVITLQSFARGENTRRRH 925 (1193)
Q Consensus 885 aai~IQ~~~Rg~laRk~y~~~r~--a~i~IQs~~Rg~~aRr~~ 925 (1193)
+++.||++|||+++|+.|..++. |+++||++|||+++|+.|
T Consensus 5 a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 5 AIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 55666666666666666666654 666666666666666554
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.1e-08 Score=79.39 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 905 LCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQL 963 (1193)
Q Consensus 905 ~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~ 963 (1193)
++.+++.||++|||+++|+.|..++.. .|+++||+.||||++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~-------------~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKV-------------NCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhHHHHHhh
Confidence 578999999999999999999988753 6999999999999999986
No 17
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.52 E-value=2e-07 Score=78.96 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhH
Q 001002 904 ELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK-MHK 967 (1193)
Q Consensus 904 ~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~-l~~ 967 (1193)
++..++++||++||||++|+.|..++ .+++.||+.|||+++|+.+. ++.
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r---------------~aai~IQ~~~Rg~~aR~~~~~~r~ 52 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ---------------RAAITVQRYVRGYQARCYAKFLRR 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999987 58999999999999999998 443
No 18
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=98.29 E-value=6.8e-07 Score=77.31 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=46.3
Q ss_pred hhHHH-HHHHHHHHHhhhhHhHHhhhh---hhHHHHHHHHHHHHHHHHHHhhhhhh
Q 001002 880 KQVLQ-AIIRLQKCFRGYQARSRFREL---CNGVITLQSFARGENTRRRHASLGKS 931 (1193)
Q Consensus 880 ~~~l~-aai~IQ~~~Rg~laRk~y~~~---r~a~i~IQs~~Rg~~aRr~~~~~r~~ 931 (1193)
+..+. .++.||+.+|||++|+.|.++ +.|+.+||+++|+|+.++.|.|++.+
T Consensus 2 d~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l~ 57 (64)
T 1wdc_A 2 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLY 57 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 34444 578999999999999999999 78999999999999999999999875
No 19
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.23 E-value=9.8e-07 Score=76.07 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhhHhHHhhhh---hhHHHHHHHHHHHHHHHHHHhhhhhh
Q 001002 884 QAIIRLQKCFRGYQARSRFREL---CNGVITLQSFARGENTRRRHASLGKS 931 (1193)
Q Consensus 884 ~aai~IQ~~~Rg~laRk~y~~~---r~a~i~IQs~~Rg~~aRr~~~~~r~~ 931 (1193)
..++.||+.+|||++|+.|.++ +.|+.+||+++|+|+.++.|.|++.+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~L~ 55 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLF 55 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3567999999999999999999 78999999999999999999999976
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.25 E-value=0.00038 Score=59.95 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 904 ELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 904 ~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
++...++.+|+.+||+++|+.|..+... ..|+.+||..+|+|+.++.+.
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~------------~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQ------------RIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhcCCh
Confidence 3457799999999999999999998754 568889999999999998776
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.19 E-value=0.0003 Score=60.46 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 905 LCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 905 ~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
+...++.+|+.+||+++|+.|..+... ..|+.+||..+|+|+.++.+.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~------------~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREK------------SVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhccCh
Confidence 456789999999999999999998754 568889999999999998766
No 22
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.88 E-value=0.0041 Score=61.74 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001002 943 QLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 943 ~~~aai~IQs~~R~~laRr~~~ 964 (1193)
...++++||+.+|||++|+.++
T Consensus 44 R~~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999998
No 23
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.86 E-value=0.0013 Score=83.43 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=47.1
Q ss_pred hHhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 897 QARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 897 laRk~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
+...+-.++...++.||+.||||++|+.|.+++.+ +.|+++||+.||+|++||.|.
T Consensus 770 LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~------------r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 770 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ------------RIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcchH
Confidence 34444455567899999999999999999988753 578999999999999999987
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.70 E-value=0.062 Score=58.97 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLAS 1073 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~ 1073 (1193)
++.+...+..++.+...+...+..++.+...++.++...+....+++....+.+.. +.+++..+...+..+..
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~----i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQT----LQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc
Confidence 44455566666666666666666777777777777777777777777776666666 55555555555555543
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.35 E-value=0.039 Score=54.17 Aligned_cols=84 Identities=23% Similarity=0.173 Sum_probs=74.3
Q ss_pred cccccccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 985 KSSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSL 1064 (1193)
Q Consensus 985 ~l~e~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l 1064 (1193)
.+.+++..+..++......+.+.+.++..+.....+++..+..+..++++++..+.++....++++.. +.+|+.++
T Consensus 45 ~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e----~~~Lk~~l 120 (129)
T 2fxo_A 45 SLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDE----CSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 35556777888888999999999999999999999999999999999999999999999999999888 88888888
Q ss_pred HHHHHHhh
Q 001002 1065 AAARKSLA 1072 (1193)
Q Consensus 1065 ~elk~sL~ 1072 (1193)
.+++.+++
T Consensus 121 ed~e~~l~ 128 (129)
T 2fxo_A 121 DDLELTLA 128 (129)
T ss_dssp HHHHTTTC
T ss_pred HHHHHhhc
Confidence 88877654
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.74 E-value=0.28 Score=53.77 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 001002 1057 MASLQMSLAAAR 1068 (1193)
Q Consensus 1057 ~~eLq~~l~elk 1068 (1193)
...|+.+++.++
T Consensus 92 ~~aL~kEie~~~ 103 (256)
T 3na7_A 92 LRSLNIEEDIAK 103 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.41 E-value=0.27 Score=70.37 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..+|++.|+||||||+.-+.+.+-|..+
T Consensus 906 RhGvmlVGp~gsGKTt~~~~L~~al~~l 933 (3245)
T 3vkg_A 906 NHGVMMVGPSGGGKTTSWEVYLEAIEQV 933 (3245)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHHTTT
T ss_pred eeeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3556666666666666666666655554
No 28
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.91 E-value=0.014 Score=59.30 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.8
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+..+....|+|+|++|+|||..++.+.+.+..
T Consensus 38 l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34466788999999999999999999887754
No 29
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.61 E-value=1.7 Score=42.54 Aligned_cols=113 Identities=22% Similarity=0.266 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccCc
Q 001002 1015 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLASDNTPGGSTPMKFLNIVPDAGS 1094 (1193)
Q Consensus 1015 e~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~~e~~~~~~~~k~~~~~~~~~~ 1094 (1193)
+..+..+++++..|+..++..+....+++.++.++..+ +..|+.++..-...++
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~E----k~~L~~qL~~E~~~l~---------------------- 65 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQE----KNDLQLQVQAEQDNLA---------------------- 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------------------
Confidence 34455566777777777777777777777777776666 4444444443222222
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1095 GRESNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1095 ~~el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
..+.....|......++..+.+.... .++.......+...+++++..+.+|+..++.++
T Consensus 66 -----e~EE~~~~L~~~k~eLe~~l~el~~r---------------leeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 66 -----DAEERCDQLIKNKIQLEAKVKEMNKR---------------LEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455555555555555555422 223333445566667777777777777776654
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.49 E-value=0.37 Score=49.91 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001002 1148 KMRFETWKKDYKTRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1148 k~~lE~~kk~~e~rL~elk~eL~~L~~ 1174 (1193)
|..+.....+++..+++|+.++..++.
T Consensus 156 Ke~l~~~~QRLkdE~rDLk~El~v~~~ 182 (189)
T 2v71_A 156 KESLLVSVQRLKDEARDLRQELAVRER 182 (189)
T ss_dssp HHHHHCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555556667777777777777654
No 31
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.34 E-value=0.044 Score=55.45 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=39.0
Q ss_pred CCCCChHHHHHHhccCCCC-CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 255 VPIYGNKFITAYRQKVMDS-PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 255 l~~y~~~~~~~y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+.-|+.+....|+...... ..--... ......+.......|+|+|++|+|||+.++.+.+.+..
T Consensus 5 l~~~~~~l~~~~~~~~~~~~~g~~~~~-~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 5 LEKYSRDLTALARAGKLDPVIGRDTEI-RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTTTEEEHHHHHHTTCSCCCCSCHHHH-HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchhhcchHHH-HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555566666544332 1000111 22223334466789999999999999999999887764
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.83 E-value=1.7 Score=44.10 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEY 1042 (1193)
Q Consensus 998 ~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~el 1042 (1193)
..++....+|+.++..++.....+++++..|+.+|+++...+...
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~ 88 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHD 88 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444554444444555555555555555444444433
No 33
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.25 E-value=0.045 Score=57.19 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.|+.......|+|+|.||||||+.++.+...+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45555677899999999999999999987765
No 34
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.11 E-value=0.067 Score=55.89 Aligned_cols=30 Identities=33% Similarity=0.260 Sum_probs=26.5
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.......|+|.|.||||||+.++.+...|.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999998886
No 35
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.05 E-value=0.046 Score=57.58 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=26.7
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+..+.|.|.|.||||||+.++.|...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999998874
No 36
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.00 E-value=0.043 Score=57.35 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|||+|.||||||+.++.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998887654
No 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.61 E-value=0.094 Score=53.59 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+.|+|.|++|+|||+.++.+...+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998874
No 38
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.43 E-value=0.11 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
++.|+|.|++|+|||+.++.+..++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 389999999999999999999888764
No 39
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.42 E-value=0.056 Score=55.57 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..-|+|+|.||||||+.++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999988765
No 40
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=92.27 E-value=0.066 Score=65.47 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001002 1148 KMRFETWKKDYKTRLREAKVRLNKLGQSE 1176 (1193)
Q Consensus 1148 k~~lE~~kk~~e~rL~elk~eL~~L~~~~ 1176 (1193)
+....+..+.++.+|.+|+.+|+.++.++
T Consensus 506 R~~~~ekn~~lq~qL~~L~~el~~~r~~~ 534 (575)
T 2i1j_A 506 RRTLAERNERLHNQLKALKQDLARSCDET 534 (575)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHTTBCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 34455667788899999999999988754
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.01 E-value=5.2 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=17.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il 314 (1193)
..+.|++.|++|+|||.+.+.++
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L 1325 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTL 1325 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHG
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 35679999999999997654433
No 42
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.99 E-value=0.068 Score=56.00 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+.|+|.|.||||||+..+.++.++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999988764
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.96 E-value=0.14 Score=54.02 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=29.9
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
....+......+.|+|+|++|+|||+.++.+.+.+...
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33444445567899999999999999999998887653
No 44
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.96 E-value=0.055 Score=55.90 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..|+|+|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999987764
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.93 E-value=3.8 Score=41.48 Aligned_cols=108 Identities=11% Similarity=0.155 Sum_probs=53.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 001002 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLASDNTP 1077 (1193)
Q Consensus 998 ~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~~e~~ 1077 (1193)
..++..+.++...+.........+.+...++...++..+....++..+...++.. ...|+.++..+...|..+...
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~----k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS----KSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444445555555566666666666666665555554443 344444444444444433211
Q ss_pred CCCCCccccccccccCcccchhhhHHHHHHHHHHHHHHHhchHHH
Q 001002 1078 GGSTPMKFLNIVPDAGSGRESNGSLTAVNHLTKEFEQRRQNFDDD 1122 (1193)
Q Consensus 1078 ~~~~~~k~~~~~~~~~~~~el~~~e~~v~~L~kE~e~~~q~~~d~ 1122 (1193)
.. ....-+.+++.++..|..|+++.+......
T Consensus 85 r~-------------q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 85 RG-------------HDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 001124456666777777766666655544
No 46
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.90 E-value=0.07 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..|+|+|-||||||+.++.+.+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999887654
No 47
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.89 E-value=0.15 Score=56.12 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
++..+. -...+.|+|+|.||||||++.+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344443 4567899999999999999999999988654
No 48
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.68 E-value=0.081 Score=54.37 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=22.5
Q ss_pred HhhcCCceEEEEcCCCCCChhhHHHHHHH
Q 001002 287 MMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 287 m~~~~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
|..-.....|+|+|.||||||+.++.+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 44455678999999999999999998854
No 49
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.16 E-value=0.084 Score=55.64 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....-|+|+|.||||||+.++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345789999999999999999887654
No 50
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.14 E-value=0.099 Score=54.28 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.|.|.|.||||||+.++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999887654
No 51
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.13 E-value=0.14 Score=51.11 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+.++|.|++|+|||+.++.+..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999888764
No 52
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.09 E-value=0.085 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....-|+|+|.||||||+.++.+.+.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999887765
No 53
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.04 E-value=0.11 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~ 318 (1193)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999877653
No 54
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.02 E-value=0.11 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
--|+|+|.||||||+.++.+.+.|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999987776
No 55
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.92 E-value=0.12 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
-|-|+|+|.+|||||+.++.+-+.|-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 38999999999999999999877653
No 56
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.77 E-value=0.13 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|+|.|.||||||+.++.+.+.|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 57
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.54 E-value=0.17 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|+|.||||||+.++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999887654
No 58
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.51 E-value=0.13 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999887765
No 59
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.39 E-value=0.11 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|.|.||||||+.++.+..++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999987765
No 60
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.37 E-value=0.12 Score=54.18 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346789999999999999999998765
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.36 E-value=15 Score=38.04 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=17.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhchHHHHHHHH
Q 001002 1097 ESNGSLTAVNHLTKEFEQRRQNFDDDAKALI 1127 (1193)
Q Consensus 1097 el~~~e~~v~~L~kE~e~~~q~~~d~~k~l~ 1127 (1193)
++..+......|..-+..++|.-|+.+.+.+
T Consensus 96 el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444455555666666666666666655543
No 62
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.34 E-value=0.21 Score=52.56 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.6
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
........|+|.|.+|||||+.++.+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445678999999999999999999988886
No 63
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.31 E-value=0.14 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.....|.|.|.||||||+.++.+...+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987763
No 64
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=90.30 E-value=1.1 Score=44.58 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 001002 906 CNGVITLQSFARGENTRRRHAS 927 (1193)
Q Consensus 906 r~a~i~IQs~~Rg~~aRr~~~~ 927 (1193)
..++++||+.+|||++|+.+.-
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4689999999999999998764
No 65
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.27 E-value=0.16 Score=52.28 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..|+|+|.||||||+.++.++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 5789999999999999999999987654
No 66
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.25 E-value=8.1 Score=38.67 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHhchHHHH
Q 001002 1101 SLTAVNHLTKEFEQRRQNFDDDA 1123 (1193)
Q Consensus 1101 ~e~~v~~L~kE~e~~~q~~~d~~ 1123 (1193)
.+.....+..|+|.+...+=+.+
T Consensus 77 aE~~~~~ie~ElEeLTasLFeEA 99 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASLFDEA 99 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777665554
No 67
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.18 E-value=0.18 Score=52.65 Aligned_cols=32 Identities=31% Similarity=0.183 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
.....|.|+|.||||||+.++.+...|...++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45678999999999999999999998865443
No 68
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.15 E-value=0.18 Score=51.44 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
....|+|+|.+|||||+.++.+..+|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999888764
No 69
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.13 E-value=0.15 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|+|.||||||+.++.+.+.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988776
No 70
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.11 E-value=0.13 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.....|+|+|+||||||+..+.++..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3467899999999999999999876553
No 71
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.98 E-value=0.29 Score=54.59 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=26.4
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+....|.|+|.||||||+.++.+..+|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456788999999999999999999988864
No 72
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.85 E-value=0.24 Score=58.21 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.++..++ ......|+|+|++|||||++.+.++.++..
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3556664 356778999999999999999999988753
No 73
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.82 E-value=0.17 Score=53.22 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
....|+|+|.||||||+.++.++..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987754
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.78 E-value=0.16 Score=52.31 Aligned_cols=23 Identities=48% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|.|.|++|||||+..|.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998877
No 75
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.59 E-value=0.2 Score=55.78 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....|||+|.||||||+.++.+.+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999987654
No 76
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.52 E-value=0.19 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..-|+|+|.+|||||+.++.+.++|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999987766
No 77
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=89.46 E-value=0.17 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhHhH
Q 001002 882 VLQAIIRLQKCFRGYQARS 900 (1193)
Q Consensus 882 ~l~aai~IQ~~~Rg~laRk 900 (1193)
.-.+|+.||++||+|+.|+
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3457777888888877764
No 78
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.44 E-value=0.2 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|++|||||+..|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567899999999999999999999988
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.41 E-value=0.14 Score=54.52 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|+||||||+..+.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 80
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.33 E-value=0.32 Score=55.94 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=28.6
Q ss_pred HHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 284 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+..+.. .....|+|+|.||||||++.+.++.++...
T Consensus 115 l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 115 FKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 444433 334589999999999999999999998765
No 81
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.31 E-value=0.24 Score=50.89 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..|.|+|.||||||+.+..++.+|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4689999999999999999999998654
No 82
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.31 E-value=0.32 Score=59.20 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.+.+.|+|.|.||||||+.++.|...|...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 3568899999999999999999998886543
No 83
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.29 E-value=0.16 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~ 319 (1193)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999988763
No 84
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.26 E-value=0.29 Score=50.51 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+..+....|+|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 31 GYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 333444444599999999999999999988774
No 85
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.23 E-value=0.27 Score=55.90 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=29.1
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
.......|.|.|+||||||++++.+..++...++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3456889999999999999999999998876554
No 86
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.20 E-value=0.097 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=24.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578899999999999999999999865
No 87
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.18 E-value=0.36 Score=50.34 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.0
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+.+..|+|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999877753
No 88
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.12 E-value=0.17 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|+|+|.||||||+.++.+...|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999998886654
No 89
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.02 E-value=0.22 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999987766
No 90
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.96 E-value=0.19 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
....|+|+|.||||||+++-.+++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999988876
No 91
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=88.93 E-value=0.23 Score=36.13 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhHhHHh
Q 001002 883 LQAIIRLQKCFRGYQARSRF 902 (1193)
Q Consensus 883 l~aai~IQ~~~Rg~laRk~y 902 (1193)
-.+|+.||++||+|+.|+..
T Consensus 6 e~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34677777777777776543
No 92
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.78 E-value=0.24 Score=50.85 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=23.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
-|+|+|-+|||||+.++.+.++|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 38999999999999999999988654
No 93
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.78 E-value=0.31 Score=49.94 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....|+|.|.+|||||+.++.+..+|...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999887543
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.76 E-value=0.18 Score=50.36 Aligned_cols=19 Identities=47% Similarity=0.756 Sum_probs=17.8
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001002 295 SIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~i 313 (1193)
-|+|+|.+|||||+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 95
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.74 E-value=0.3 Score=54.85 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...+|+|+|++|+|||+.++.+.+++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 46789999999999999999999988653
No 96
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.72 E-value=0.35 Score=54.51 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=26.0
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
......|.|.|.||||||+.++.|...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356789999999999999999999887764
No 97
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.69 E-value=10 Score=37.94 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Q 001002 1014 AEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSL-AAARKSLAS 1073 (1193)
Q Consensus 1014 le~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l-~elk~sL~~ 1073 (1193)
+...+.....++..|..++..+.....+.|..+.+++.+ +++|..++ +++...++.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~E----lEeLTasLFeEAN~MVa~ 105 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE----VEDLTASLFDEANNMVAD 105 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334445567778888888888888888888888887777 55555443 556665554
No 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.67 E-value=0.23 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~ 315 (1193)
..|+|.|.||||||+.++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999864
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.59 E-value=0.24 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|.|.+|||||+.++.+.+.|-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998773
No 100
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.41 E-value=0.23 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999887765
No 101
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.41 E-value=0.26 Score=56.96 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...+.|+|+|.||||||++.+.++.++...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 457889999999999999999999988754
No 102
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.38 E-value=0.23 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~ 318 (1193)
-|+|.|.+|||||+.++.+.++|-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988764
No 103
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.33 E-value=0.29 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred CceEEEEcCCCCCChhhHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKF 312 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~ 312 (1193)
....+.|.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 457899999999999999997
No 104
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.33 E-value=0.28 Score=50.00 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|+|+|.+|||||+.++.+.+.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998766
No 105
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.31 E-value=0.25 Score=52.09 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..|.|+|.||||||+.++.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998766
No 106
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.30 E-value=0.24 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999988766
No 107
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.18 E-value=0.11 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.318 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~ 319 (1193)
-|+|.|.||||||+.++.+.++|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999988864
No 108
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.11 E-value=0.39 Score=53.91 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.....|-|+|.||||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5567899999999999999999988775
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.07 E-value=0.3 Score=54.81 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..+.|.|.|.||||||++++.+..++..-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 567999999999999999999998887543
No 110
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.06 E-value=0.34 Score=54.32 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....|.|.|++|||||++++.+..++..-+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999998887544
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.99 E-value=0.47 Score=51.78 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....+|+|+|++|+|||..++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4567899999999999999999887763
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.86 E-value=0.27 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999987765
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.60 E-value=0.28 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|+|+|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 49999999999999999987765
No 114
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.56 E-value=0.22 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=16.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHH-HHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAM-QYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il-~yL 317 (1193)
....|.|+|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999987 654
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.48 E-value=0.37 Score=53.48 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 39 ~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 39 HYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444445544699999999999999999998874
No 116
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.40 E-value=0.18 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
.....|.|.|.+|||||+.++.+..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34678999999999999988877554
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.27 E-value=0.52 Score=53.74 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCce--EEEEcCCCCCChhhHHHHHHHHHH
Q 001002 282 TAYNEMMGDGVNQ--SIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 282 ~Ay~~m~~~~~~Q--sIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+.........+. +++|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444444556667 999999999999999998877654
No 118
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.19 E-value=0.3 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987765
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.11 E-value=0.33 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~ 315 (1193)
..|+|+|-+|||||+.++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999998876
No 120
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.02 E-value=0.38 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....|-|+|.+|||||+.++.+...|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999988766
No 121
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.97 E-value=0.6 Score=54.04 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCchhhHHHHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 273 SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 273 ~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.|++......++..+. .-.....|+|.|.+|||||+.++.+...+
T Consensus 148 ~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 148 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3677677777777774 34567799999999999999999998753
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.97 E-value=0.49 Score=53.94 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+...+...+...+|+|+|++|+|||..++.+.+.+..
T Consensus 34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555556677889999999999999999999888754
No 123
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.96 E-value=0.24 Score=48.88 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+..|+|.||+|+|||..++.+-+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999887633
No 124
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.93 E-value=0.32 Score=49.62 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~ 319 (1193)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999999888754
No 125
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.87 E-value=0.42 Score=54.06 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+.+..+..+.+-+|+|+|.+|.|||.+++.+++-|...
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 44455567889999999999999999999999999653
No 126
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.76 E-value=0.7 Score=49.84 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...=-|+|+|.+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999998766
No 127
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.73 E-value=0.33 Score=50.30 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..-|+|.|-+|||||+.++.+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999877664
No 128
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.70 E-value=0.36 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..-|+|+|.+|||||+.++.+.+.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 129
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.58 E-value=0.45 Score=52.48 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988766
No 130
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=86.57 E-value=0.7 Score=56.47 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCCchhh---HHHHHHHHHh--hcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 270 VMDSPHVYA---IADTAYNEMM--GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 270 ~~~~PHiya---vA~~Ay~~m~--~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
...+||-|. |+ +..+... .......|+|+|-||||||+.++.+-+.|...
T Consensus 369 g~~~p~w~~~~eVs-r~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 369 GAHIPEWFSYPEVV-KILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp TCCCCTTTSCHHHH-HHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cCCCCccccccccc-HHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 334555554 54 3333333 34456789999999999999999998887753
No 131
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.54 E-value=0.46 Score=54.62 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....|.|.|.+|||||++++.+..++..-+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 467899999999999999999998887543
No 132
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.53 E-value=0.3 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..-|+|+|-+|||||+.++.+.++|-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988874
No 133
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.52 E-value=0.35 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+--|+|.|-+|||||+.++.+.+.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999988765
No 134
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.51 E-value=0.35 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
.|.|+|.+|||||+.++.+-+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999987765
No 135
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.48 E-value=0.34 Score=52.67 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
....|.|.|.||||||+.+|.+.+.|-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999986653
No 136
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.47 E-value=0.39 Score=52.41 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..-|+|+|-+|||||+.++.+.++|...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 35799999999999999999998887543
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.29 E-value=0.47 Score=49.71 Aligned_cols=31 Identities=26% Similarity=0.212 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
....++|.|++|||||+.++.++..++..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999977765443
No 138
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.26 E-value=0.39 Score=53.94 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 283 AYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 283 Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.+.+- .-...+.|.|.|+||||||+.++.|+.++
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 444432 33567899999999999999999999998
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.23 E-value=0.41 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+..|+|.|++|+|||+.++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45679999999999999999887654
No 140
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.09 E-value=0.33 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..-|+|+|-+|||||+.++.+.++|-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999888764
No 141
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.99 E-value=0.38 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+.|.|.|.+|||||++.+.++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4588999999999999999999887
No 142
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.98 E-value=0.53 Score=52.91 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHhhc--------CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 276 VYAIADTAYNEMMGD--------GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~--------~~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
+..+.......++.. .....|+|.|.+|||||++++.+..++...+
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 444444444444422 3457899999999999999999999988644
No 143
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.97 E-value=0.46 Score=49.24 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+..|+|+|-+|||||+.++.+.++|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455689999999999999999998877
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.97 E-value=0.39 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.-.|+|+|.+|||||+.++.+.+.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 145
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.97 E-value=0.18 Score=58.01 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+.|+|+|+||||||++.+.++.++..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3568999999999999999999887653
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.94 E-value=0.34 Score=52.59 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+|+|.||||||+.++.+.+.|
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999998876554
No 147
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.89 E-value=0.29 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...-|+|.|-+|||||+.++.+.+.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999988765
No 148
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.85 E-value=0.82 Score=55.55 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=34.1
Q ss_pred CCCCCchhh---HHHHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 270 VMDSPHVYA---IADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 270 ~~~~PHiya---vA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...+||-|. |+......+. .......|+|+|-+|||||+.++.+.+.|..
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 344677666 5533332221 2334578999999999999999999887764
No 149
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.84 E-value=0.27 Score=49.90 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=17.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|+|+|-+|||||+.++.+-+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999886554
No 150
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.81 E-value=0.32 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987655
No 151
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.79 E-value=0.52 Score=56.29 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=37.1
Q ss_pred CchhhHHHHHHHHHhhc---------CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 274 PHVYAIADTAYNEMMGD---------GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~---------~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
-.++.+-......++.. ...+.|.|.|.||||||++++.|..++...+|
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 35666666666666532 34679999999999999999999998876443
No 152
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.78 E-value=0.44 Score=51.23 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988765
No 153
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.65 E-value=0.26 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.246 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...-|.|+|.||||||+.++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999999998887654
No 154
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.60 E-value=0.35 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.+.-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3567899999999999999888753
No 155
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.54 E-value=0.31 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.--|.|+|.||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999998877664
No 156
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.41 E-value=5.1 Score=36.94 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1006 ELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1006 eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
.+..++..++.++...+.++..|..++........+.|..+.+++.+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 55 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555555444
No 157
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.41 E-value=0.57 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.+.|.|++|||||+.++.++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 568899999999999999999985544
No 158
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.40 E-value=0.37 Score=50.94 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.-|+|.|.+|||||+.++.+.+.|-
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988774
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.27 E-value=0.4 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|+|.|.||||||+.++.+...|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998755
No 160
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.22 E-value=0.42 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
+...|.|+|.+|||||+.++.+.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567999999999999999888764
No 161
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.15 E-value=0.64 Score=54.88 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=29.4
Q ss_pred HHHHHHhhcCC-ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 282 TAYNEMMGDGV-NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 282 ~Ay~~m~~~~~-~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.+...+..... ..+++|.|++|+|||+.++.+.+++...
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33444444332 6799999999999999999999887654
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.03 E-value=0.53 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.536 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
...|+|+|-+|||||+.++.+-+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988776
No 163
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.94 E-value=11 Score=45.87 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
...+.+...+++.+...++..+...+++.++..++++.++++..+++.+.+.+.+.
T Consensus 504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 34444444455555555555555555555555555555555555555555444444
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.89 E-value=0.41 Score=50.30 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.+.|.|+||||||+.++.++-.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999998876443
No 165
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.87 E-value=0.54 Score=48.89 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
++--|+|+|-+|||||+.++.+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999998887653
No 166
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.81 E-value=0.42 Score=54.28 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.6
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
......+|+|+|++|+|||+.++.+.+.+..
T Consensus 40 ~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 40 RGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567789999999999999999999887654
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.68 E-value=0.39 Score=54.51 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=27.7
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+......++|+|+|++|+|||+.++.+.+.+..
T Consensus 38 ~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 38 PLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp GGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3334567889999999999999999998877654
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.62 E-value=1.1 Score=49.95 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+|+|++|+|||..++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998766
No 169
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.58 E-value=0.34 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.--|+|+|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999887765
No 170
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.53 E-value=0.57 Score=51.82 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|.|++|+|||+.++.+.+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999998888764
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.48 E-value=0.68 Score=52.34 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
..+.|.|+|.+|+|||+++..+..+|+..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987544
No 172
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.40 E-value=0.52 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...-|+|+|-+|||||+.++.+.+.|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999988765
No 173
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.36 E-value=0.5 Score=56.82 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=35.1
Q ss_pred CCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.|+|..+..++|..-. +....|+|+|-||||||+.++.+-+.|-.
T Consensus 377 rpeV~~vLr~~~~~~~--~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRP--KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGG--GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhccccc--ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3778777777763322 23468999999999999999999999875
No 174
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.34 E-value=0.49 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=19.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 48999999999999998886654
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.19 E-value=0.72 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+|+|+|++|+|||..++.+.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37999999999999999999988875
No 176
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=84.09 E-value=0.53 Score=34.27 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001002 944 LREIICLQSAIRGWLVRKQL 963 (1193)
Q Consensus 944 ~~aai~IQs~~R~~laRr~~ 963 (1193)
..+|++||..||+++.++..
T Consensus 6 e~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35777888888888777653
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=84.07 E-value=0.6 Score=51.69 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=26.4
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
......|+|+|++|+|||+.++.+.+++...
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456689999999999999999999888653
No 178
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.95 E-value=0.52 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999999999988765
No 179
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.89 E-value=0.57 Score=49.74 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..-|+|.|.+|||||+.++.+.++|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999998754
No 180
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.86 E-value=0.42 Score=57.61 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+.|+|+|++|||||++.+.++.++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34599999999999999999877663
No 181
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.76 E-value=8.6 Score=37.93 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1007 LQRRVLKAEATLGQKEEENAALREQLQQYDAKWL 1040 (1193)
Q Consensus 1007 Le~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ 1040 (1193)
++.+...++..+.++.+|+..|..++.....+..
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433333
No 182
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.73 E-value=15 Score=33.35 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=19.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
+..+...+..++..+.+.+....+++..+..|.++..++..+..+.+++.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~ 65 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKV 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33334444444444443333333333333333333333333333333333
No 183
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.68 E-value=13 Score=36.82 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=44.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASL 1060 (1193)
Q Consensus 995 ~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eL 1060 (1193)
..+..++..+..++.++..++..+..+...++.++.++..+.-+...++.++++++++.++.++.+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666667777777777666666666667777777777777777777777777666555555
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.67 E-value=0.61 Score=55.20 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.++..+.-.+|+|.|++|+|||+.++.|.+.+.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445555556668999999999999999999988763
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.63 E-value=0.58 Score=52.87 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 283 AYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 283 Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+.+... ..+....++|+|++|+|||+.++.+...|.
T Consensus 25 ~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 25 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp HHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred HHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444 333322399999999999999999988664
No 186
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.49 E-value=0.45 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~y 316 (1193)
..++|+|.||||||+..++++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57899999999999998888764
No 187
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.47 E-value=0.57 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+-.|.|.|.||||||+.++.+.+.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987763
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.47 E-value=0.54 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+.+|+|.|++|+|||..++.+.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999886643
No 189
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.42 E-value=0.47 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~ 315 (1193)
+-.|+|+|.+|||||+.++.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999888754
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.40 E-value=0.48 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.7
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~ 315 (1193)
.|.|+|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988865
No 191
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.38 E-value=0.51 Score=49.57 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL 317 (1193)
|+|+|-+|||||+.++.+.+.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 192
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=83.33 E-value=0.58 Score=33.01 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001002 944 LREIICLQSAIRGWLVRK 961 (1193)
Q Consensus 944 ~~aai~IQs~~R~~laRr 961 (1193)
..||++||..||+++.++
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457788888888887764
No 193
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.32 E-value=0.64 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+..|+|+||+|+|||+.++.+.+++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 35789999999999999988886654
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.28 E-value=0.84 Score=51.58 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=26.5
Q ss_pred HHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 284 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
....+..++-..++++|++|+|||+.++.+.+.|.
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 33344444323399999999999999999999875
No 195
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.15 E-value=15 Score=44.54 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=49.8
Q ss_pred cCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 991 DVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKS 1070 (1193)
Q Consensus 991 ~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~s 1070 (1193)
..+.++...+++..+.++.+..+.+++..++.++.+.++++..+++.+..+..++...+.++ +..+..++.++.+.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e----~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE----TSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44556666666777777777777777777777777777777777777776666555555544 44444444444444
Q ss_pred hh
Q 001002 1071 LA 1072 (1193)
Q Consensus 1071 L~ 1072 (1193)
+.
T Consensus 581 ~~ 582 (597)
T 3oja_B 581 KN 582 (597)
T ss_dssp TC
T ss_pred hc
Confidence 43
No 196
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.06 E-value=0.75 Score=50.77 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=27.0
Q ss_pred HHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 284 y~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 33444445444599999999999999999998874
No 197
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.05 E-value=1.4 Score=55.66 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=41.1
Q ss_pred cCCCCChHHHHHHhccCCCC-CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 254 AVPIYGNKFITAYRQKVMDS-PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 254 ~l~~y~~~~~~~y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+.-|+.+....|+....++ ..-=..... ...++..+....++|.|++|+|||..++.+.+.+..
T Consensus 168 ~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~-l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 168 RLENFTTNLNQLARVGGIDPLIGREKELER-AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp -CCSSSCBHHHHHHTTCSCCCCSCHHHHHH-HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHHhcCCCCCccCCHHHHHH-HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 44556667777776554433 100011112 223344556778999999999999999999988754
No 198
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.01 E-value=0.61 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|.|-+|||||+.++.+.++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.91 E-value=0.44 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~ 315 (1193)
.|.|+|.+|||||+.++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999998877
No 200
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.64 E-value=1.1 Score=50.75 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.7
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+.+.+++|+|++|+|||+.++.+.+.+..
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999999999888753
No 201
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.60 E-value=0.56 Score=50.60 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999885443
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.56 E-value=0.28 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
.+..|+|.||+|+|||..++.+-+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 456799999999999988776643
No 203
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.56 E-value=0.54 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|+-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999987543
No 204
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.41 E-value=0.66 Score=49.28 Aligned_cols=28 Identities=39% Similarity=0.630 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
--|+|.|-+|||||+.++.+.++|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4699999999999999999999987643
No 205
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.40 E-value=0.61 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999886544
No 206
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.34 E-value=0.57 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..|.|+-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45689999999999999999988644
No 207
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.29 E-value=0.86 Score=51.22 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
....++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444444333499999999999999999998875
No 208
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.08 E-value=0.86 Score=48.79 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...-|+|.|.+|||||+.++.+.++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998875
No 209
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.05 E-value=0.66 Score=50.71 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+|.|++|+|||..++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999998886553
No 210
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=82.05 E-value=0.68 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.. +.+.|.|+||||||+..|.+.-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 788999999999999999875443
No 211
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.01 E-value=0.67 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.++-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999988654
No 212
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=81.99 E-value=0.8 Score=48.22 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.--|+|.|-+|||||+.++.+.+.|-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34699999999999999999988763
No 213
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.96 E-value=0.7 Score=49.94 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
..-|+|.|.+|||||+.++.+.++|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999987643
No 214
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.96 E-value=0.87 Score=51.52 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
+--|-|+|.||||||+.++.+...|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 347889999999999999999888764
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.91 E-value=0.68 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+|.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=81.78 E-value=1.1 Score=50.09 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH-Hh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA-AL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~-~~ 320 (1193)
.+.|+|.|++|+|||..+..+...+. ..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~ 180 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK 180 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999888 54
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.68 E-value=1.2 Score=50.39 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....++|.|++|+|||+.++.+...+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999999887
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.67 E-value=0.58 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.+.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578899999999999999888543
No 219
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.57 E-value=0.63 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.|.-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567889999999999999888743
No 220
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=81.55 E-value=1.2 Score=47.54 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHH
Q 001002 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il 314 (1193)
+|.+-..++..+.. ++.++++|++|||||+....++
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 44555566655544 4789999999999998776554
No 221
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.55 E-value=0.73 Score=50.62 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+.+.|.|+||||||+..|.|+-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999988654
No 222
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.51 E-value=0.74 Score=50.47 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 4459999999999999999988765
No 223
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.50 E-value=0.75 Score=49.38 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+.--|+|.|.+|||||+.++.+.++|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35689999999999999999999998753
No 224
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.48 E-value=0.64 Score=51.22 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999885543
No 225
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=81.48 E-value=1.6 Score=48.74 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHHhccCCC----CCchhhHHHHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 263 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|+....+ ..|+. ...+.++ ..+.+..++++|++|+|||+.++.+.+.+
T Consensus 17 ~~k~rP~~~~~ivg~~~~~----~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDK----ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHH----HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHhhCCCCHHHHhCcHHHH----HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 5667655443 23433 2333333 34456788999999999999999998776
No 226
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.44 E-value=0.9 Score=48.02 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
|+..+ ...+.+.|.|+||||||+..|.+.-.
T Consensus 15 ~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45554 34678999999999999999999776
No 227
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.44 E-value=4.9 Score=39.26 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcc
Q 001002 1010 RVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSL-AAARKSLASD 1074 (1193)
Q Consensus 1010 r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l-~elk~sL~~~ 1074 (1193)
+..++...+.....+...|..++..+.....+.|..+.+++.+ +++|..++ +++...++..
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E----lE~LTasLFeEAN~MVa~a 94 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE----VEDLTASLFDEANNLVADA 94 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4444444445567778888888888888888888888887777 56665443 5666666654
No 228
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.42 E-value=0.61 Score=51.26 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45788999999999999998885443
No 229
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.38 E-value=1.6 Score=51.79 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.9
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+....++|.|++|.|||..++.+.+.+..
T Consensus 197 ~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred hccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3355668999999999999999999988753
No 230
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.16 E-value=0.67 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.|.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 3568899999999999999988743
No 231
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.15 E-value=0.8 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.--|.|+|-+|||||+.++.+-+.|-
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999998866553
No 232
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=81.13 E-value=0.68 Score=52.13 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
...|+|+|+||+|||+++-.++..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 579999999999999998888764
No 233
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.07 E-value=1.6 Score=48.95 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.0
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
......|+|+|++|+|||..++.+.+.+
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999886553
No 234
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.94 E-value=5.1 Score=35.62 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1012 LKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSL 1064 (1193)
Q Consensus 1012 ~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l 1064 (1193)
+++...+..++.+|..|++++..++.++.+...+-..+..+++..++.|.-++
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344444455555555555555555555555444455555555555554443
No 235
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.92 E-value=1.8 Score=50.97 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
....|+++|.+|||||+++..+..+|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999987543
No 236
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=80.89 E-value=2.2 Score=55.43 Aligned_cols=44 Identities=5% Similarity=-0.216 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 905 LCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1193)
Q Consensus 905 ~r~a~i~IQs~~Rg~~aRr~~~~~r~~aa~~IQ~~~~~~~~aai~IQs~~R~~laRr~~~ 964 (1193)
+..++++|| .+|||++|++|.+++ ++++.||..+|++..|+...
T Consensus 774 ~~~~~~~iq-~~r~~l~r~~~~k~~---------------~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 774 PDHLAELVK-RVNHWLICSRWKKVQ---------------WCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHcc
Confidence 345666666 589999999998876 46677777777766555544
No 237
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=80.84 E-value=0.67 Score=51.03 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.|.|.|+||||||+..+.++..+...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 578999999999999999988765433
No 238
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.82 E-value=0.53 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+..|+|.|++|+|||..++.+.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45669999999999999999987765
No 239
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=80.82 E-value=0.64 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il 314 (1193)
..+.+.|.|+||||||+..|.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45778899999999999988774
No 240
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.71 E-value=27 Score=35.04 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=35.8
Q ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 992 VPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKS 1048 (1193)
Q Consensus 992 ~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~k 1048 (1193)
..+.++..+...+.+.+.|...++..+..++.++..|+..|...+.....+...+.+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666666666666666665555555444443
No 241
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=80.68 E-value=0.63 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~ 315 (1193)
...|+|+|+||+|||+++-.+++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999876654
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.60 E-value=0.96 Score=50.49 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+.|+|.|.+|||||+++..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998875
No 243
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.49 E-value=1.6 Score=49.24 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=27.1
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+-+.+++++|+.|.|||+.++.+.+.|..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4556889999999999999999999988864
No 244
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=80.47 E-value=0.7 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.+.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999987543
No 245
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.43 E-value=17 Score=32.29 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 1000 l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
++...+....++..++..+...+.....++..+..+..++..++..+
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333333333333333333333333333333
No 246
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=80.40 E-value=1.2 Score=47.56 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.0
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+..-|+|.|-+|||||+.++.+.++|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999999876
No 247
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=80.40 E-value=0.61 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+.+.|.|+||||||+..|.+.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456788999999999999988743
No 248
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.27 E-value=0.34 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+.|+|+|.||||||+..+.++.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 468999999999999999999887643
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.24 E-value=0.85 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999887655
No 250
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.22 E-value=0.75 Score=50.47 Aligned_cols=25 Identities=16% Similarity=0.492 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.|.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3567889999999999999888743
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=80.20 E-value=0.73 Score=49.38 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|+||||||+..|.++-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999886443
No 252
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.05 E-value=1.1 Score=49.65 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...+.++|.|++|||||+.++.+.-.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999998877664
No 253
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.02 E-value=0.77 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il 314 (1193)
...+.+.|.|+||||||+..|.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999988874
No 254
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.90 E-value=0.86 Score=48.02 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
....|+|+|.||||||+.+..+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999988776554
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.75 E-value=1.3 Score=49.41 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
..+.|.|+|.+|+|||+++..+..+++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999886543
No 256
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=79.62 E-value=0.98 Score=47.08 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCccHHHHHHh--hhHHHHHhhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQ--TNHILEAFGN 343 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~~~~~~i~~~il~--snpiLEAFGN 343 (1193)
.--|.|+|-+|||||+.++.+-+.|-..-=..+.+-.++.. ...|.+.||.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~ 64 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGG 64 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhCh
Confidence 45688999999999999999887641100011123233332 2457778885
No 257
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.46 E-value=0.8 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999998887543
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.39 E-value=0.97 Score=47.03 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHhhc--CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 283 AYNEMMGD--GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 283 Ay~~m~~~--~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
++..++.. .....++|.|++|||||+.++.++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444432 3567899999999999999888765
No 259
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=79.39 E-value=0.93 Score=52.49 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345788999999999999998885443
No 260
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=79.35 E-value=1.9 Score=49.30 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=30.2
Q ss_pred hHHHHHHHHHh---hcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 278 AIADTAYNEMM---GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 278 avA~~Ay~~m~---~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+++.+...+. ..+.-.+|+|.|.+|||||+.++.+...|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35565555543 344556799999999999999998877654
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.35 E-value=0.98 Score=48.12 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...|+|.|-+|||||+.++.+-++|-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 262
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.30 E-value=1.3 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+..|+|.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999987765
No 263
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.10 E-value=0.88 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|+|.|-+|||||+.++.+-++|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998877
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.09 E-value=1 Score=50.62 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=21.9
Q ss_pred HhhcCCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 287 MMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 287 m~~~~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
|.....+.-|+|+|.||||||+.+..+.+.
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHh
Confidence 334445678999999999999888777554
No 265
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.08 E-value=1.5 Score=48.42 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=25.4
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 35 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 35 QIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 333444333399999999999999999998874
No 266
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=78.94 E-value=26 Score=33.53 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 001002 1056 QMASLQMSLAAARKSLASD 1074 (1193)
Q Consensus 1056 ~~~eLq~~l~elk~sL~~~ 1074 (1193)
++..+|+.++.+...|...
T Consensus 68 e~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 68 ELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhh
Confidence 3555566666555555543
No 267
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.75 E-value=1.8 Score=49.70 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=28.3
Q ss_pred HHH-HHHhhc--CCceEEEE--cCCCCCChhhHHHHHHHHHH
Q 001002 282 TAY-NEMMGD--GVNQSIII--SGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 282 ~Ay-~~m~~~--~~~QsIii--sGESGaGKTet~k~il~yL~ 318 (1193)
.++ ..+... ...+.++| +|++|.|||+.++.+.+.+.
T Consensus 36 ~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 36 RIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp HHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred HHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 344 444445 56789999 99999999999998877654
No 268
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.71 E-value=16 Score=35.07 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=38.3
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW 1053 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~l 1053 (1193)
+..++..++..+++++.+.++........+.++..|+..+...--.+.+++.++..+.+++
T Consensus 39 l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 39 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666555555556666777777777766666667777766666654
No 269
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.50 E-value=0.92 Score=50.72 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+..|+|+||+|+|||..++.+-+++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 456789999999999999998887654
No 270
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=78.42 E-value=0.89 Score=49.57 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.+.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999998887544
No 271
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=78.41 E-value=0.43 Score=53.66 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+.|.|+||||||+..|.|+.++.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4568999999999999999998876553
No 272
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=78.33 E-value=0.9 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+.+.|.|+||||||+..|.+.-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457889999999999999888753
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=78.28 E-value=0.89 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999999887544
No 274
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.17 E-value=0.93 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|.|++|+|||+.++.+.+.+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34469999999999999998887654
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=78.04 E-value=2.2 Score=50.35 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.+..|+++|.+|+|||+++-.+..||+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 467899999999999999999999998643
No 276
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.02 E-value=2.9 Score=47.21 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=42.7
Q ss_pred cCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHH
Q 001002 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 249 vNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il 314 (1193)
+++|..+++ ++.............|..|.. .|+..+... .+..+|+.+++|+|||.+.-..+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q~--~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQKPSKIQE--RALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCCCCHHHH--HHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 478888875 556666655555555665554 667666654 44779999999999998765443
No 277
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.82 E-value=2.4 Score=44.34 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHH-HHHHHHH
Q 001002 250 NPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA-KFAMQYL 317 (1193)
Q Consensus 250 NP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~-k~il~yL 317 (1193)
..|..+++ ++.............|..|.. .|+..+... ..+++.+++|+|||.+. -.+++++
T Consensus 14 ~~f~~l~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 14 YKFDDMEL-DENLLRGVFGYGFEEPSAIQQ--RAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCGGGGTC-CHHHHHHHHHHTCCSCCHHHH--HHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CChhhcCC-CHHHHHHHHHCCCCCCcHHHH--HHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 34666664 455555555544444544443 566666543 45999999999999873 3444544
No 278
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=77.81 E-value=0.84 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|.||||||+..+.++-.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 46789999999999999998887544
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.72 E-value=1.4 Score=46.63 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....++|.|++|||||+.+..++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999888777666543
No 280
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=77.65 E-value=1.1 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+.++|.|++|||||+.++.++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999888764
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.62 E-value=1.4 Score=46.97 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|.|+|.+|||||+.++.+...|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999887755
No 282
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.54 E-value=1 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..-|+|.|-+|||||+.++.+.++|.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999888774
No 283
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.52 E-value=1 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
-.|+|+|.||||||+.++.+.+.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999988876654
No 284
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=77.45 E-value=3.2 Score=42.59 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=37.1
Q ss_pred CCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH
Q 001002 250 NPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1193)
Q Consensus 250 NP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~ 312 (1193)
+.|..+++ +++........+...|-.|. ..|+..+... ..+++.+++|||||.+.-.
T Consensus 3 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 3 NEFEDYCL-KRELLMGIFEMGWEKPSPIQ--EESIPIALSG---RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp SSGGGSCC-CHHHHHHHHTTTCCSCCHHH--HHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred CChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence 34666664 46666666655555555554 3566666543 4599999999999976543
No 285
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=77.22 E-value=1.1 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~y 316 (1193)
..|+|+|-||||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999988763
No 286
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.01 E-value=27 Score=35.06 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1000 l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
....+..|+....+...+-...+.++..|..++.+.+.+....+..+.+++..
T Consensus 54 v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~ 106 (155)
T 2efr_A 54 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS 106 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344445555555555544444444444444443
No 287
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=76.96 E-value=5.2 Score=41.59 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=39.7
Q ss_pred ecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHH
Q 001002 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 248 avNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..++|..+++ +++............|..|.. .|+..+... ..+++.+++|+|||.+.-..+-
T Consensus 12 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 12 HSSGFRDFLL-KPELLRAIVDCGFEHPSEVQH--ECIPQAILG---MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp --CCSTTSCC-CHHHHHHHHHTTCCCCCHHHH--HHHHHHHTT---CCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCHhhcCC-CHHHHHHHHHCCCCCCCHHHH--HHHHHHhCC---CCEEEECCCCCchhhhhhHHHH
Confidence 3456887775 456666655555555665553 555555553 3499999999999987655543
No 288
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=76.95 E-value=1 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~y 316 (1193)
.+.+.|.|+||||||+..|.+.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999988543
No 289
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.91 E-value=1.3 Score=53.33 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+|+|+|++|+|||+.++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998876
No 290
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=76.82 E-value=1.2 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...+.+.|.|+||||||+..|.|.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3457889999999999999888753
No 291
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=76.79 E-value=1.1 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+|.|++|||||+..+.|.--|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999888765433
No 292
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.65 E-value=1.5 Score=49.31 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999887764
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=76.64 E-value=1.1 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45788999999999999988875443
No 294
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.60 E-value=41 Score=29.99 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1003 ALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLE 1041 (1193)
Q Consensus 1003 ~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~e 1041 (1193)
.++.|+.++..+-..+.-++-|+++|+++...+..+..+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444444443333333
No 295
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=76.56 E-value=1.1 Score=46.75 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999886654
No 296
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.55 E-value=2.4 Score=49.17 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=42.5
Q ss_pred CchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
|.+..+.-+|...+..-.+-|.+.|.|.||+|||+.++.|.++++.-
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 56778888999999999999999999999999999999999988753
No 297
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.52 E-value=1.3 Score=49.27 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.+-.|++.|++|+|||..++.+.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999998877
No 298
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=76.34 E-value=1.3 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4578899999999999999888543
No 299
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.26 E-value=1.2 Score=50.76 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..+.+|+|.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999886543
No 300
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=76.25 E-value=3.3 Score=44.48 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=39.4
Q ss_pred cCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH-HHHHHH
Q 001002 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLAA 319 (1193)
Q Consensus 249 vNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i-l~yL~~ 319 (1193)
+++|..+++ ++.............|..|.. .|+..+... +.+|+.+++|||||.+.-+. ++.+..
T Consensus 42 ~~~f~~l~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 42 TKTFKDLGV-TDVLCEACDQLGWTKPTKIQI--EAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HCCTGGGTC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHcCC-CHHHHHHHHHcCCCCCCHHHH--HHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 445666653 345555554444445555543 456555543 56999999999999885543 444443
No 301
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=76.22 E-value=1.1 Score=51.44 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+.+.|.|+||||||+.++.|..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 478999999999999999999887653
No 302
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=76.11 E-value=16 Score=33.19 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=36.8
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
...++..+.+.+...+....+++.....+..+...|..++.+.+.+...+...+..++..
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666666666666666666666666555555
No 303
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.10 E-value=3.1 Score=42.72 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHH-HHHHHHH
Q 001002 252 FKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK-FAMQYLA 318 (1193)
Q Consensus 252 ~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k-~il~yL~ 318 (1193)
|..+++ ++.............|..|. ..|+..+... +.+++.+++|+|||.+.- .+++++.
T Consensus 3 f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 3 FKDFPL-KPEILEALHGRGLTTPTPIQ--AAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp GGGSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred hhhcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 344443 45556666555554555554 3555555543 459999999999998743 3445543
No 304
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.01 E-value=20 Score=32.95 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=20.8
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYD 1036 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e 1036 (1193)
++.++......+..|..++.+........+.++..++.+|+++-
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544444444444444555555555554443
No 305
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.89 E-value=36 Score=31.57 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 1002 ~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
.....++..+..++....+++.++..|+.+++.++..+..++..+
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444433333
No 306
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.84 E-value=26 Score=33.91 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQY 1035 (1193)
Q Consensus 998 ~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~ 1035 (1193)
...+..+.++.+.+..++..+..+...+..|+..+.+.
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444455555555555444444444444444444443
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.79 E-value=1.7 Score=51.02 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....|+|.|.+|||||+++..+..+|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999998654
No 308
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=75.75 E-value=3.3 Score=48.83 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=37.0
Q ss_pred ecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHH
Q 001002 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1193)
Q Consensus 248 avNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k 311 (1193)
.+.+|..+++ ++..+..........|..+. ..|+..++.. .++.+|+.|.+|||||...-
T Consensus 90 ~~~~f~~~~l-~~~l~~~l~~~g~~~p~~~Q--~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 90 SVKSFEELRL-KPQLLQGVYAMGFNRPSKIQ--ENALPLMLAE-PPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCCCSGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHTSB-SCCEEEEECCSSSSHHHHHH
T ss_pred CcCCHHHcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHHcC-CCCcEEEEcCCCCchhHHHH
Confidence 3455655553 34444444444444444433 4666666653 46889999999999998843
No 309
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.72 E-value=1.2 Score=47.72 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..-|+|.|-+|||||+.++.+.++|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999988873
No 310
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.71 E-value=1.4 Score=50.93 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+..++|.|.||||||++++.++..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5667999999999999999999876653
No 311
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=75.69 E-value=1.4 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4678899999999999998887543
No 312
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=75.63 E-value=1.2 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..|+|.|++|+|||+.+|.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3449999999999999999887654
No 313
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=75.57 E-value=1.1 Score=50.01 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356789999999999999999886443
No 314
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.50 E-value=1.8 Score=52.39 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+........++|.|++|+|||+.++.+..++.
T Consensus 101 ~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 101 KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 333334577899999999999999999988873
No 315
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.30 E-value=28 Score=30.87 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1006 ELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSME 1050 (1193)
Q Consensus 1006 eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~kle 1050 (1193)
+|+..++......+.+.+|+...+......+.++.+.+.+.+.+.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 316
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.25 E-value=2.9 Score=52.67 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.4
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.+..-.|+|.|++|.|||..++.+.+.+..
T Consensus 198 ~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 355567999999999999999999988853
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=75.19 E-value=1.4 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999999887543
No 318
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.06 E-value=2.3 Score=48.24 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 281 DTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 281 ~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
..+...+. .-.....|.|.|.+|||||+..+.++.++...++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 34555443 3466789999999999999999999988865443
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.05 E-value=2 Score=47.88 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
...|+++|.+|+|||+++..+..+++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999986543
No 320
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.03 E-value=1.1 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~y 316 (1193)
--|+|+|.||||||+.+..+.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999887776544
No 321
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=74.94 E-value=37 Score=32.14 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 001002 1021 KEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSLASDNTPGG 1079 (1193)
Q Consensus 1021 le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL~~~e~~~~ 1079 (1193)
-..++..|..+++..|..+.++.....+.....+.+|..|....+.....|.....+..
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35566777778888888888887777777778888888888777777777766555543
No 322
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=74.91 E-value=1.5 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4678899999999999998887544
No 323
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.77 E-value=3.2 Score=47.34 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=43.8
Q ss_pred eEecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH-HHHHH
Q 001002 246 LIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYL 317 (1193)
Q Consensus 246 LiavNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~-il~yL 317 (1193)
+..+.+|..+++ ++..+..........|..+.. .|+..+... .++.+|+.+++|||||...-+ +++.+
T Consensus 21 ~~~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 21 LYSVKSFEELRL-KPQLLQGVYAMGFNRPSKIQE--NALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp TCCSSCTGGGTC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred ccccCCHhhCCC-CHHHHHHHHHcCCCCCCHHHH--HHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 345677777764 455555555555555655543 566666553 457899999999999988643 34444
No 324
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.68 E-value=1.6 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~ 315 (1193)
.--|+|+|-+|||||+.++.+-.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 325
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.60 E-value=1.6 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~ 318 (1193)
|||.|..||||++-++.|.+.+-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 88999999999999999988763
No 326
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.60 E-value=43 Score=29.67 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1004 LAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1004 l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
+..++...+.+..+....+..+...+.+....+..+..+..+++.+++.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444444444444443
No 327
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.51 E-value=32 Score=32.25 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001002 1054 QKQMASLQMSLAAARKSLA 1072 (1193)
Q Consensus 1054 q~~~~eLq~~l~elk~sL~ 1072 (1193)
+..++.|+.+++.+...+.
T Consensus 89 ~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 328
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=74.39 E-value=2.1 Score=54.09 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=20.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 001002 901 RFRELCNGVITLQSFARGENTRRRHASLGK 930 (1193)
Q Consensus 901 ~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~ 930 (1193)
+-.++..+++.||+.||||++|++|.++|.
T Consensus 763 r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667777777777777777777764
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.23 E-value=1.6 Score=47.83 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.++|.|.+|||||+.++.++-.++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 468899999999999999999887554
No 330
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.17 E-value=21 Score=31.07 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhc
Q 001002 1016 ATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQMSLA---AARKSLAS 1073 (1193)
Q Consensus 1016 ~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~eLq~~l~---elk~sL~~ 1073 (1193)
.++.+++.+|..|+++++.++.++.+...+-..+..+++..++.|.-.+. +++..|++
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555544433 44554444
No 331
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.15 E-value=1.5 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|.|++|+|||..++.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999887765
No 332
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=74.06 E-value=1.5 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 4578899999999999998887543
No 333
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=73.95 E-value=2.5 Score=52.00 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+...|+|+|-||||||+.++.+-++|...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~ 79 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH 79 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 56689999999999999999999998543
No 334
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=73.85 E-value=2.5 Score=44.21 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+......--|+|.|.+|+|||+.+..++..+.
T Consensus 31 ~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 31 KLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 333445567899999999999999988887753
No 335
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=73.82 E-value=2 Score=44.77 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
|+|-|--|||||+-++.+.++|...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 88999999999999999999998754
No 336
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.64 E-value=64 Score=30.77 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1001 PTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWL 1040 (1193)
Q Consensus 1001 ~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ 1040 (1193)
...+.+|++++..+......+.-++..++..+++++.+..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4456666666666666666666666666666666655543
No 337
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.49 E-value=1.7 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
....|+|+|++|+|||..++.+.+.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999888765
No 338
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.44 E-value=3.9 Score=43.11 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=41.4
Q ss_pred cCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH-HHHHHHH
Q 001002 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYLAA 319 (1193)
Q Consensus 249 vNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~-il~yL~~ 319 (1193)
+.+|..+++ ++.............|..|. ..|+..+... +.+|+.+++|+|||.+.-+ +++.+..
T Consensus 24 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 24 ITRFSDFPL-SKKTLKGLQEAQYRLVTEIQ--KQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp CSBGGGSCC-CHHHHHHHHHTTCCBCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 345666663 55666666555555555444 3566666543 4599999999999998654 4555543
No 339
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.41 E-value=3.6 Score=52.09 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=37.0
Q ss_pred ecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH
Q 001002 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 248 avNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i 313 (1193)
.+|||..+++ ++............|-.+ -..++...+.. ++.++|+|++|||||+....+
T Consensus 70 ~~~~f~~~~l-~~~~~~~l~~r~~lP~~~---q~~~i~~~l~~--~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 70 KINPFTGREF-TPKYVDILKIRRELPVHA---QRDEFLKLYQN--NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp SBCTTTCSBC-CHHHHHHHHHHTTSGGGG---GHHHHHHHHHH--CSEEEEECCTTSSHHHHHHHH
T ss_pred CCCCccccCC-CHHHHHHHHHhhcCChHH---HHHHHHHHHhC--CCeEEEECCCCCCHHHHHHHH
Confidence 3688888874 566655554444333222 22333333433 578999999999999965555
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=73.37 E-value=2.2 Score=44.48 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...--|+|.|.+|||||+.+..++..+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445799999999999999988887763
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=73.28 E-value=1.2 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+.+.|.|+||||||+..|.|.-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 457889999999999999888743
No 342
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=73.17 E-value=1.5 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.|.-++
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 346889999999999999999886554
No 343
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.15 E-value=1.6 Score=46.26 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=26.9
Q ss_pred HHHHHHhhc-CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 282 TAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 282 ~Ay~~m~~~-~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.+...+... .+.-+|+|+|..|+|||+.+..+.+++
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344445443 123479999999999999999998886
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=73.02 E-value=1.2 Score=52.02 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.8
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....-|||+|-||||||+.++.+.+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999998876543
No 345
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.01 E-value=1.5 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~y 316 (1193)
..|+|+|.+|||||+.++.+.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988777554
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=73.00 E-value=1.9 Score=45.93 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+.--|+|.|..|||||+-++.|.+.+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 455688899999999999999988763
No 347
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.92 E-value=1.5 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|+|.||||||+.+..+.+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 58999999999998877765544
No 348
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.86 E-value=26 Score=34.81 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=52.3
Q ss_pred ccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 990 KDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQM 1057 (1193)
Q Consensus 990 ~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~ 1057 (1193)
+..++.++..++..+.+++..+.+-.+.+..+.+|+..|+-++..++.+...++++..++-+.|...+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777888888888877777777788888888888888888888888888888777774443
No 349
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=72.85 E-value=1.2 Score=52.93 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
.....+.|.|.||||||+.+|+|+.|+...+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 35678999999999999999999998765444
No 350
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=72.20 E-value=1.6 Score=49.81 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|...++.=.+.|.+.|.|.+|||||+..+.|+..+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4677788666788999999999999999999988774
No 351
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=71.93 E-value=1.8 Score=45.60 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
-|+|+|.+||||++.++++.+.+
T Consensus 13 II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHc
Confidence 68899999999999999998865
No 352
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.75 E-value=3.6 Score=42.94 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=37.4
Q ss_pred cCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH
Q 001002 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1193)
Q Consensus 249 vNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~ 312 (1193)
+..|..+++ ++.............|..|.. .|+..+... +.+++.+++|||||.+.-+
T Consensus 3 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~~~~~---~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 3 ETQFTRFPF-QPFIIEAIKTLRFYKPTEIQE--RIIPGALRG---ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp -CCGGGSCC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHHT---CCEEEECCSSHHHHHHHHH
T ss_pred CCCHhhCCC-CHHHHHHHHHCCCCCCCHHHH--HHHHHHhCC---CCEEEECCCCChHHHHHHH
Confidence 345666663 566666666655555655543 555555543 5689999999999987543
No 353
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=71.28 E-value=2.4 Score=47.36 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=23.8
Q ss_pred HHhhcCCceEEEEcCCCCCChhhHHHHHH
Q 001002 286 EMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 286 ~m~~~~~~QsIiisGESGaGKTet~k~il 314 (1193)
.+..--..+.+.|.|.||||||+..+.++
T Consensus 158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 158 ELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34444457899999999999999999988
No 354
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=71.18 E-value=2 Score=50.72 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..|...++.=.+.|.+.|.|.||||||+..+.|..++.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35777886777899999999999999999999988753
No 355
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=71.07 E-value=3.4 Score=48.76 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
..++|.|..|+|||+++..++.+|...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999987654
No 356
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.75 E-value=1.8 Score=55.54 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.5
Q ss_pred hcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
..+....++|.|++|+|||..++.+.+.+..
T Consensus 187 ~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 187 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3455667999999999999999999998865
No 357
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=70.62 E-value=2 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
...+|+|.|++|+|||..++.+.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999888554
No 358
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=70.59 E-value=2 Score=51.19 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
+.+.|.|+||||||+..+.|.-.+..-+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 78999999999999999999887754333
No 359
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=70.56 E-value=1.7 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
-.|.|+|++|||||+.++.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999887766
No 360
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=70.33 E-value=1.3 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
.....+.|.|+||||||+..|.|.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34578899999999999999887543
No 361
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.15 E-value=6.5 Score=43.78 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=38.8
Q ss_pred CCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 251 P~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
+|..+++ ++......+......|..+.. .|+..++..+ +.+++.+++|+|||.+.-..+-.
T Consensus 7 ~f~~~~l-~~~~~~~l~~~g~~~~~~~Q~--~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 7 NFNELNL-SDNILNAIRNKGFEKPTDIQM--KVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CGGGSSC-CHHHHHHHHHHTCCSCCHHHH--HHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHH
T ss_pred chhhcCC-CHHHHHHHHHcCCCCCCHHHH--HHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHH
Confidence 5666664 445555555555555555543 4666666543 67999999999999886554433
No 362
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.95 E-value=15 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=15.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 001002 994 QEQVQALPTALAELQRRVLKAEATL 1018 (1193)
Q Consensus 994 ~~el~~l~~~l~eLe~r~~ele~~l 1018 (1193)
+.++..++..+..|+.++.+++..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554
No 363
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.73 E-value=70 Score=29.54 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1005 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 1005 ~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
..++..+..++......+.++..|+.+++.++.....++..+
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444333333
No 364
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=69.42 E-value=4.5 Score=50.46 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=40.8
Q ss_pred CCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH-HHHHHH
Q 001002 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLAA 319 (1193)
Q Consensus 251 P~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i-l~yL~~ 319 (1193)
+|..+++ .+.....++..+. .+++.+=..|+..+..+ ++.+||+|++|||||..+-+. ++.+..
T Consensus 9 ~~~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 9 PIEDLKL-PSNVIEIIKKRGI--KKLNPPQTEAVKKGLLE--GNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp BGGGSSS-CHHHHHHHHTTSC--CBCCHHHHHHHHTTTTT--TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cHHHcCC-CHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 3555553 4556666655433 34444555677664443 688999999999999998544 455553
No 365
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=69.06 E-value=6.4 Score=44.83 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=36.8
Q ss_pred cCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH-HHHHH
Q 001002 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYL 317 (1193)
Q Consensus 249 vNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~-il~yL 317 (1193)
+++|..+++ ++.............|..|.. .|+..+... +.+|+.+++|||||.+.-+ +++.+
T Consensus 39 ~~~f~~~~l-~~~~~~~l~~~~~~~~~~~Q~--~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 39 VDSFDDMNL-SESLLRGIYAYGFEKPSAIQQ--RAILPCIKG---YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp CCCGGGGCC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHTT---CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred hcCHhhCCC-CHHHHHHHHHcCCCCCCHHHH--HHhHHHhCC---CCEEEECCCCCcccHHHHHHHHHHH
Confidence 345555553 444444444444445555543 556566553 3499999999999987433 34443
No 366
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.02 E-value=2.2 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+..|+|+|++|+|||..++.+-+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999888554
No 367
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=68.90 E-value=6.7 Score=34.29 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMK 1047 (1193)
Q Consensus 997 l~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~ 1047 (1193)
..++.-...+|-.|++++..+...+..|+..+++....++.++.++|++++
T Consensus 25 KNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 25 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666666556666666666655555555555554443
No 368
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=68.88 E-value=9.9 Score=40.27 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=41.3
Q ss_pred EecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH-HHHHH
Q 001002 247 IAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLA 318 (1193)
Q Consensus 247 iavNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i-l~yL~ 318 (1193)
-.+.+|..+++ ++.............|..+. ..|+..+... +.+++.+.+|||||.+.-+. +.++.
T Consensus 26 ~~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 26 KPVLNFYEANF-PANVMDVIARQNFTEPTAIQ--AQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCCSSTTTTTC-CHHHHHHHHTTTCCSCCHHH--HHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CccCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 34455665553 45666666655555555444 3556555543 46999999999999985543 45554
No 369
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.83 E-value=69 Score=29.44 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001002 1054 QKQMASLQMSLAAARKSLAS 1073 (1193)
Q Consensus 1054 q~~~~eLq~~l~elk~sL~~ 1073 (1193)
+....++..++.-....|.+
T Consensus 73 ~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 73 DDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455666665555555443
No 370
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=68.65 E-value=2.3 Score=45.46 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+-.|.|+|.+|||||+.++.+-+.|-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999998877663
No 371
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.57 E-value=5.2 Score=43.26 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH-HHHHHH
Q 001002 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLAA 319 (1193)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i-l~yL~~ 319 (1193)
..|+..+... +.+|+.+.+|||||.+.-+. ++.+..
T Consensus 82 ~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 82 HKSIRPLLEG---RDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHHHHT---CCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 3555555553 34999999999999886554 445543
No 372
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=68.56 E-value=6.2 Score=35.51 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCcccccccchhccCCcEEEEEcCCCCEEEEEEEeecC-CeEEEEecCCcEEEEeCCCcccCCC
Q 001002 143 GEVEWEDNLGYFIKKKLRVWCRLEDGKWESGMIQSTSG-DEAFVLLSNGNVVKVSTGELLPANP 205 (1193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 205 (1193)
+...|......+. .| .++.|.+|+|.++.+ +..+|...||.+.+|...++-|...
T Consensus 18 ~~~~f~vGd~VlA-----rW---~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 18 GSSEFQINEQVLA-----CW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp ---CCCTTCEEEE-----EC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred CCcccccCCEEEE-----Ee---CCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCCh
Confidence 3455555554443 47 688999999999987 5788999899999999999887654
No 373
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=68.52 E-value=17 Score=30.15 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCCEEEEEEEeecC--CeEEEEecCCcEEEEeCCCcccCC
Q 001002 157 KKLRVWCRLEDGKWESGMIQSTSG--DEAFVLLSNGNVVKVSTGELLPAN 204 (1193)
Q Consensus 157 ~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~~~~g~~~~v~~~~~~~~n 204 (1193)
.+..|-+...++-|.+|+|++++. +...|+..||....+...++.+..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAA 55 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEECS
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccccc
Confidence 467888999999999999999754 478999999999999888887654
No 374
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=68.47 E-value=4 Score=51.07 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=40.3
Q ss_pred CCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHH-HHHHHHHH
Q 001002 252 FKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK-FAMQYLAA 319 (1193)
Q Consensus 252 ~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k-~il~yL~~ 319 (1193)
|..+| ..+.....++..... ++|.+=..|+..+..+ ++.+|++|++|||||..+- .+++.+..
T Consensus 3 f~~l~-l~~~~~~~l~~~g~~--~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 3 VDELR-VDERIKSTLKERGIE--SFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp GGGCC-SCHHHHHHHHHTTCC--BCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HhhcC-CCHHHHHHHHHCCCC--CCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 45555 345666666654433 3444445677663333 6889999999999999884 44556553
No 375
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=68.44 E-value=1.7 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+.|.|+||||||+..|.++.++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999999987654
No 376
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.27 E-value=4.7 Score=47.55 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
+..|+++|++|+|||..++.+-+.+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46899999999999999999988874
No 377
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.86 E-value=3.7 Score=48.29 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+....|+|+|.+|+|||+++-.+..+|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999876
No 378
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.55 E-value=1.8 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..++|.|++|+|||+.++.+...+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6899999999999999999988764
No 379
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.18 E-value=7.2 Score=44.33 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=38.6
Q ss_pred cCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHH
Q 001002 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 249 vNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il 314 (1193)
.++|..+++ +++..+.....+...|..|.. .|+..+... +.+++.+++|+|||.+.-..+
T Consensus 20 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYL-KRELLMGIFEAGFEKPSPIQE--EAIPVAITG---RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHHT---CCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCC-CHHHHHHHHHCCCCCCCHHHH--HHHHHHhcC---CCEEEECCCCcHHHHHHHHHH
Confidence 456777775 455555555555555665554 555566543 349999999999998765443
No 380
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=67.17 E-value=3.3 Score=49.95 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
....|++.|-+|||||+.++.+.++|-..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34679999999999999999999998654
No 381
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=67.16 E-value=2.5 Score=48.21 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=26.1
Q ss_pred HHHHHHhhcC--CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 282 ~Ay~~m~~~~--~~QsIiisGESGaGKTet~k~il~y 316 (1193)
.+...++..+ ..+.+.|.|++|||||+.+++++-.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555433 5678999999999999998887654
No 382
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=67.14 E-value=3.5 Score=47.29 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=25.9
Q ss_pred hhh-HHHHHHHHHhhcCCceEEEEcCCCCCChhhHH
Q 001002 276 VYA-IADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 276 iya-vA~~Ay~~m~~~~~~QsIiisGESGaGKTet~ 310 (1193)
||. ++.......+..+.|-+|+-.|.+|||||.|+
T Consensus 67 Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 67 VYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 444 33444455555678999999999999999886
No 383
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.61 E-value=13 Score=32.67 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCCEEEEEEEeecC-CeEEEEecCCcEEEEeCCCcccCCCC
Q 001002 158 KLRVWCRLEDGKWESGMIQSTSG-DEAFVLLSNGNVVKVSTGELLPANPD 206 (1193)
Q Consensus 158 ~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np~ 206 (1193)
|..|=-.-.|+.|.+|+|.++.+ +.++|...|+..-+|+..++.|..+.
T Consensus 13 Gd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 13 GEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 62 (74)
T ss_dssp TCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGG
T ss_pred CCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChh
Confidence 44444444588999999999976 67899988998888999988887654
No 384
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=66.27 E-value=4.3 Score=43.31 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
...-++|+|+.|+|||+.+-.++.-+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3578899999999999987666554443
No 385
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=66.09 E-value=3.8 Score=45.55 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~y 316 (1193)
+.|+|+|+.|.|||+.++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 79999999999999998887654
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.90 E-value=2.4 Score=51.04 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=26.7
Q ss_pred HHHHHhhc--CCceEEEEcCCCCCChhhHHHHHH-HHHHH
Q 001002 283 AYNEMMGD--GVNQSIIISGESGAGKTETAKFAM-QYLAA 319 (1193)
Q Consensus 283 Ay~~m~~~--~~~QsIiisGESGaGKTet~k~il-~yL~~ 319 (1193)
|...+.-. ...+.+.|.|+||||||+.++.++ .-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 44444432 367899999999999999999963 44443
No 387
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=65.89 E-value=3 Score=42.76 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.+|||||+..+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47899999999998877664
No 388
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=65.88 E-value=2.9 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.+.|.|+||||||+..|+|.-.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357899999999999999999876553
No 389
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.85 E-value=82 Score=29.12 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKM 1046 (1193)
Q Consensus 1000 l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~ 1046 (1193)
++...+....+...++..+...+.+...++..+..+..++..++..+
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433333333333
No 390
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.71 E-value=44 Score=29.64 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1017 TLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1193)
Q Consensus 1017 ~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~ 1052 (1193)
++......+..++.+|.+.+.++.++..++++++++
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777888888888888888777766
No 391
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=65.54 E-value=3.3 Score=43.44 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.-|+|-|--|||||+.++.+.++|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999999985
No 392
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.52 E-value=3.5 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+..|+|.|++|+|||..++.+..
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 393
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=65.47 E-value=2.5 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.++.++
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 356889999999999999999886543
No 394
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.45 E-value=4.9 Score=49.03 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
++.++|+|..|+|||++.+.++.++...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999988754
No 395
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=65.44 E-value=2.6 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.++.++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456899999999999999999886554
No 396
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.40 E-value=5.7 Score=50.79 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+|+|.|++|+|||+.++.+-+++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999988764
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=65.28 E-value=1.2 Score=48.36 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..-|+|.|-.|||||+.++.+.++|
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999887776
No 398
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=65.27 E-value=1.8 Score=52.97 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..|.++.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 356889999999999999999986554
No 399
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=64.93 E-value=5.1 Score=49.19 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
+..++|+|..|+|||++...++..|..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999865
No 400
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.68 E-value=78 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1017 TLGQKEEENAALREQLQQYDAKWLEYEAK 1045 (1193)
Q Consensus 1017 ~l~~le~E~~~L~e~Le~~e~~~~ele~k 1045 (1193)
.+.++++++..|.++.++.......+..+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~e 56 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33334444444444444433333333333
No 401
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=64.64 E-value=4.4 Score=46.34 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.1
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 89 l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 89 FDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HTTCCEEEEEEECTTSSHHHHH
T ss_pred hCCceeEEEeeCCCCCCCceEE
Confidence 3788999999999999999986
No 402
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.58 E-value=2.9 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+|+|.|++|+|||..++.+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999887765
No 403
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=64.51 E-value=3.2 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.0
Q ss_pred CCceE--EEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQS--IIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~Qs--IiisGESGaGKTet~k~il~ 315 (1193)
..... |.|.|+||||||+..+.|+.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34456 89999999999999888754
No 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=64.48 E-value=2.6 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
...-|+|+|.+|||||+.+..+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999988777643
No 405
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=64.33 E-value=77 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001002 1038 KWLEYEAKMKSMEEMWQKQMASLQMSLAAARKSL 1071 (1193)
Q Consensus 1038 ~~~ele~k~~klee~lq~~~~eLq~~l~elk~sL 1071 (1193)
.+.++-.++++.+..+++.++.|+...+++...+
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555666777777776666554
No 406
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=64.32 E-value=4.6 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.0
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCeEEEEEECCCCCCCceEe
Confidence 3688999999999999999986
No 407
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=64.32 E-value=2.9 Score=42.73 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.0
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.+|||||+..+.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57899999999998877654
No 408
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.13 E-value=77 Score=37.25 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhchHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001002 1098 SNGSLTAVNHLTKEFEQRRQNFDDDAKALIEIKTTQPASTVHPDVELRKLKMRFETWKKDYKTRLREAKVRLNKLG 1173 (1193)
Q Consensus 1098 l~~~e~~v~~L~kE~e~~~q~~~d~~k~l~E~ke~q~e~~~~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~L~ 1173 (1193)
++...++.+++..+.+.++..+..+.+.. ++.++.+++-++++++...++..++.+.++.++.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMY-----------QHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhh-----------hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 44555555556555555554444333222 123334444445566666666666666666666553
No 409
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=64.12 E-value=3.9 Score=48.45 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.....|++.|-+|||||+.++.+.++|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345689999999999999999999988643
No 410
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=64.06 E-value=26 Score=30.11 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=41.5
Q ss_pred CcEEEEEcCCCCEEEEEEEeecCCeEEEEecCCcEEEEeCCCcccCC
Q 001002 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPAN 204 (1193)
Q Consensus 158 ~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~n 204 (1193)
+..|-+...||.|.+|+|+........|+.+|..+..+..+++....
T Consensus 19 geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 19 QEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp TCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECSS
T ss_pred CCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhhc
Confidence 67888999999999999999899999999999999998888776643
No 411
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.80 E-value=4.2 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.6
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 578999999999999999996
No 412
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=63.79 E-value=0.93 Score=50.93 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.9
Q ss_pred hhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 288 MGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 288 ~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.-...+.+.|.|.||||||+..+.++-.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 333456899999999999999998886544
No 413
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=63.65 E-value=25 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=37.1
Q ss_pred CcEEEEE-cCCCCEEEEEEEeecC--CeEEEEec-CCcEEEEeCCCcccCCC
Q 001002 158 KLRVWCR-LEDGKWESGMIQSTSG--DEAFVLLS-NGNVVKVSTGELLPANP 205 (1193)
Q Consensus 158 ~~~vw~~-~~~~~~~~~~v~~~~~--~~~~v~~~-~g~~~~v~~~~~~~~np 205 (1193)
|..|=.+ ..++.|..|+|.++.+ +.+.|... -|..-+|+.+++.|.+|
T Consensus 7 G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 7 GDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp TCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred CCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 4444444 3578999999999874 77888865 49999999999988765
No 414
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=63.63 E-value=3.7 Score=43.93 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
.+.-.++++|-.|+|||+++..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3456788899999999999999999988
No 415
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=63.52 E-value=4.8 Score=46.09 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.0
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 102 l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 102 LNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTTCCEEEEEECCTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCceeee
Confidence 3678999999999999999986
No 416
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=63.05 E-value=5.2 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
+.|+|+|++|.|||+.++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999998887654
No 417
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.99 E-value=4.9 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=19.7
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCeeEEEecccCCCceEee
Confidence 678999999999999999986
No 418
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.89 E-value=52 Score=38.78 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcc
Q 001002 1160 TRLREAKVRLNKLGQ 1174 (1193)
Q Consensus 1160 ~rL~elk~eL~~L~~ 1174 (1193)
.+|+.++..|+.-+.
T Consensus 233 ~ei~Qm~mvLE~~g~ 247 (562)
T 3ghg_A 233 TDMPQMRMELERPGG 247 (562)
T ss_dssp ---------------
T ss_pred hhhhcEEEEEEecCC
Confidence 455566666666533
No 419
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=62.78 E-value=4.4 Score=46.46 Aligned_cols=21 Identities=52% Similarity=0.765 Sum_probs=19.5
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCEEEEEeCCCCCCccEEe
Confidence 678999999999999999885
No 420
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=62.67 E-value=5.1 Score=46.03 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.6
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceEEEeecCCCCCCceEE
Confidence 678999999999999999985
No 421
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.67 E-value=3.7 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
+..|+|.|++|+|||+.++.|...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999999999887764
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=62.65 E-value=4.7 Score=42.48 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.++|.|++|+|||..+-.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999887665443
No 423
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.53 E-value=6.5 Score=41.65 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHH
Q 001002 252 FKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1193)
Q Consensus 252 ~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k 311 (1193)
|..+++ ++.............|-.|.. .|+..+... ..+|+.+++|||||.+.-
T Consensus 32 f~~l~l-~~~l~~~l~~~g~~~~~~~Q~--~ai~~i~~~---~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 32 FDDMNL-KESLLRGIYAYGFEKPSAIQQ--RAIIPCIKG---YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp GGGSCC-CHHHHHHHHHHTCCSCCHHHH--HHHHHHHTT---CCEEECCCSSHHHHHHHH
T ss_pred hhhcCC-CHHHHHHHHHCCCCCCCHHHH--HHHHHHhCC---CCEEEECCCCCcHHHHHH
Confidence 455543 344444444444444444443 555555543 449999999999998743
No 424
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=62.53 E-value=2.6 Score=44.61 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=31.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhcCC---CccHHHHHHh-----hhHHHHHhhcC
Q 001002 295 SIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQ-----TNHILEAFGNA 344 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL~~~~~~---~~~i~~~il~-----snpiLEAFGNA 344 (1193)
+|-++|-.|||||+.++++-+ +|-. .+.+..+++. -..|.+.||..
T Consensus 11 ~iglTGgigsGKStv~~~l~~----~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~ 64 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA----RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPA 64 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH----TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGG
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChh
Confidence 689999999999999887644 3321 2234445553 24788899964
No 425
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=62.44 E-value=5.2 Score=45.78 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=25.5
Q ss_pred Cchhh-HHHHHHHHHhhcCCceEEEEcCCCCCChhhHH
Q 001002 274 PHVYA-IADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 274 PHiya-vA~~Ay~~m~~~~~~QsIiisGESGaGKTet~ 310 (1193)
-.||. ++....... -++.|-||+-.|.+|||||.|+
T Consensus 62 ~~Vy~~~~~plv~~~-l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 62 SDIFDFSIKPTVDDI-LNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTHHHHHHH-TTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCCCcceEEEECCCCCCcceEe
Confidence 34555 333333333 3688999999999999999886
No 426
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=62.33 E-value=3.5 Score=49.95 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+-|.|++|||||+..|+|.-.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4568899999999999999999876553
No 427
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.30 E-value=3.9 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il~yL 317 (1193)
+++|.|++|.|||+.++.+-+++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999988877
No 428
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=62.30 E-value=3.6 Score=50.49 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
...+.+.|.|+||||||+..|+|.-.+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4578999999999999999998876554
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=62.23 E-value=4 Score=39.80 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.+|+|||+....++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999998776654
No 430
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.11 E-value=3.9 Score=48.07 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
...|+|.|.+|+|||+++-.+..+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999988654
No 431
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=61.88 E-value=3.2 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=19.4
Q ss_pred cCCceEEEEcCCCCCChhhHHHHHH
Q 001002 290 DGVNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~k~il 314 (1193)
.+.+=.|+|.|+||||||+..+.++
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHh
Confidence 3445568999999999998877664
No 432
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=61.84 E-value=5.9 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 133 l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 133 FEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hcCCceEEEEeCCCCCCCCEEe
Confidence 3688999999999999999886
No 433
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=61.76 E-value=3.3 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.....|+|.|+||+|||+.++.+...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456789999999999999999886643
No 434
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=61.65 E-value=6.1 Score=44.13 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=27.3
Q ss_pred HHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHH
Q 001002 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~y 316 (1193)
..+.+...++..+++++|+.|.|||++++.+.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4445555556789999999999999999998774
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=61.63 E-value=8.6 Score=43.48 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHHHHHHh-hcCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001002 281 DTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1193)
Q Consensus 281 ~~Ay~~m~-~~~~~QsIiisGESGaGKTet~k~il~yL~~~~~ 322 (1193)
..+...+. .......|.|+|.+|||||+.+..++.++...++
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 34444432 3456788999999999999999999988876543
No 436
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=61.61 E-value=5.7 Score=45.62 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.8
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 86 l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 86 FEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCeeEEEEeCCCCCCCceEe
Confidence 3688999999999999999885
No 437
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=61.46 E-value=5.7 Score=45.75 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.3
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEeecCCCCCcceec
Confidence 578999999999999999885
No 438
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=61.42 E-value=6 Score=45.14 Aligned_cols=22 Identities=45% Similarity=0.598 Sum_probs=20.3
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHH
T ss_pred HCCcceeEEEeCCCCCCCceEe
Confidence 4688999999999999999997
No 439
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=61.42 E-value=3.7 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~ 315 (1193)
..+.+.|.|+||||||+..+.++.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 457899999999999998887754
No 440
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.25 E-value=9.8 Score=42.12 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=22.2
Q ss_pred HHHHHHHhhcCCceEEEEcCCCCCChhhHHH
Q 001002 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1193)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGaGKTet~k 311 (1193)
..|+..++.. .++.+|+.+.+|||||.+.-
T Consensus 120 ~~ai~~il~~-~~~~~l~~a~TGsGKT~a~~ 149 (300)
T 3fmo_B 120 ENALPLMLAE-PPQNLIAQSQSGTGKTAAFV 149 (300)
T ss_dssp HHHHHHHTSS-SCCCEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHcC-CCCeEEEECCCCCCccHHHH
Confidence 4566666543 34679999999999998843
No 441
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=61.19 E-value=2.3 Score=51.84 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.++.++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456889999999999999988775543
No 442
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=61.13 E-value=8.7 Score=46.04 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
....|+|.|..|+|||+++..+..||+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 355799999999999999999999998653
No 443
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.90 E-value=3.9 Score=47.77 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
.++.++|.|.||||||++.+.++..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~ 80 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR 80 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46889999999999999988887766543
No 444
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=60.87 E-value=3.9 Score=47.84 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...|.|.|+||||||+..+.++-.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478899999999999999887544
No 445
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=60.82 E-value=8 Score=44.80 Aligned_cols=60 Identities=18% Similarity=0.048 Sum_probs=47.8
Q ss_pred ceEecCCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001002 245 VLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1193)
Q Consensus 245 iLiavNP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL~~ 319 (1193)
.|-.+||...+++-. -+..+.-+|...|.--++-|-+.|-|.+|+|||+.+..|.+..+.
T Consensus 142 ~l~Pi~P~~R~~le~---------------e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 142 NLTPDYPRERFILET---------------DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp GSCEECCCSBCCCCC---------------STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCchhhccccc---------------cchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 345778888776421 134667799999988899999999999999999999888887764
No 446
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=60.72 E-value=2.8 Score=51.34 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.+.|.|+||||||+..+.++.++
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456899999999999999998886654
No 447
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=60.62 E-value=3.4 Score=41.67 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.||+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998776654
No 448
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=60.46 E-value=5.1 Score=45.89 Aligned_cols=21 Identities=52% Similarity=0.765 Sum_probs=19.6
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 101 ~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 101 DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCceEEEEECCCCCCCceEe
Confidence 688999999999999999885
No 449
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=60.41 E-value=3.6 Score=47.88 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.5
Q ss_pred HHHHHHhhcC--CceEEEEcCCCCCChhhHHHHHH
Q 001002 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 282 ~Ay~~m~~~~--~~QsIiisGESGaGKTet~k~il 314 (1193)
..+..++..+ ....++|.|+||||||+.++.++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4455555443 46789999999999999887653
No 450
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.33 E-value=8.9 Score=37.47 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=18.5
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 993 PQEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQL 1032 (1193)
Q Consensus 993 l~~el~~l~~~l~eLe~r~~ele~~l~~le~E~~~L~e~L 1032 (1193)
...++..+...+.+-..+..+++..+..++.|++.|...|
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444445555555554443
No 451
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=60.29 E-value=5.4 Score=45.62 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHhh-cC--CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 282 TAYNEMMG-DG--VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 282 ~Ay~~m~~-~~--~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..+..++. .+ ....++|.|++|+|||+.+..++..++..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34445554 33 45789999999999999999888776643
No 452
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=60.18 E-value=4.6 Score=39.14 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|++.|.+|+|||+....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999998766554
No 453
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=60.04 E-value=5.9 Score=45.39 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=19.4
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCCceEE
Confidence 678999999999999999885
No 454
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=59.98 E-value=4.8 Score=41.37 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCChhhHHH-HHHHHH
Q 001002 293 NQSIIISGESGAGKTETAK-FAMQYL 317 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k-~il~yL 317 (1193)
.+-++|+|..|||||+.+- .+.+|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999974 444443
No 455
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=59.92 E-value=8.8 Score=43.62 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhh-cCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 278 AIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 278 avA~~Ay~~m~~-~~~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
..+......+.. .+..-.|+|+|.+|+|||+.+..+..+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445555555532 4456689999999999999999998888753
No 456
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=59.80 E-value=5.2 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
-+|+|.|++|+|||+.++.+-+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 489999999999999999886665
No 457
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=59.58 E-value=4.9 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.5
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 678999999999999999886
No 458
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.54 E-value=60 Score=28.79 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 1009 RRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMAS 1059 (1193)
Q Consensus 1009 ~r~~ele~~l~~le~E~~~L~e~Le~~e~~~~ele~k~~klee~lq~~~~e 1059 (1193)
.++.+++.+...+++.+..|+.++++...+...+..+++++.+.+--.|.+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444444444455555555544444455555555544333333
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=59.51 E-value=4.5 Score=39.99 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.+|+|||+..+.++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999998776653
No 460
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=59.29 E-value=5.8 Score=45.27 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=19.5
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 678999999999999999885
No 461
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=59.28 E-value=3.5 Score=45.92 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~ 315 (1193)
+.+=.|+|.|+||||||+..+.++.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999988754
No 462
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=58.95 E-value=4.2 Score=39.29 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998765543
No 463
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=58.93 E-value=5.9 Score=45.58 Aligned_cols=21 Identities=43% Similarity=0.677 Sum_probs=19.5
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCeeeEEeecCCCCCCCEeE
Confidence 678999999999999999886
No 464
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=58.79 E-value=5 Score=38.92 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.+|+|||+....++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765543
No 465
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=58.74 E-value=12 Score=39.19 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCCcCCCCChHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH-HHHHH
Q 001002 250 NPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYL 317 (1193)
Q Consensus 250 NP~k~l~~y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~-il~yL 317 (1193)
.+|..+++ ++.............|..|.. .|+..+... ..+|+.+++|+|||.+.-+ +++.+
T Consensus 24 ~~f~~l~l-~~~l~~~l~~~g~~~~~~~Q~--~~i~~~~~~---~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 24 ADFESLLL-SRPVLEGLRAAGFERPSPVQL--KAIPLGRCG---LDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCGGGGTC-CHHHHHHHHHTTCCSCCHHHH--HHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHhhcCC-CHHHHHHHHHCCCCCCCHHHH--HHHHHHhCC---CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 34666653 455555555555544554443 455555543 4599999999999988543 34444
No 466
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=58.69 E-value=11 Score=42.87 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001002 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il~yL~~~~ 321 (1193)
.-.|.|.|.+|||||+....++.++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 56789999999999999999998876543
No 467
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=58.51 E-value=14 Score=31.87 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=34.1
Q ss_pred CCCCEEEEEEEeecCC-eEEEEecCCcEEEEeCCCcccCCC
Q 001002 166 EDGKWESGMIQSTSGD-EAFVLLSNGNVVKVSTGELLPANP 205 (1193)
Q Consensus 166 ~~~~~~~~~v~~~~~~-~~~v~~~~g~~~~v~~~~~~~~np 205 (1193)
.++.|-+|+|.++.++ ..+|...+|.+.+|...++-|...
T Consensus 18 ~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 18 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCc
Confidence 7888999999999874 788888899999999999887654
No 468
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.37 E-value=5.7 Score=45.29 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~~~ 320 (1193)
....++|.|++|||||+.+..++..++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999999888766643
No 469
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.23 E-value=17 Score=38.41 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=31.2
Q ss_pred hHHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHH-HHHHHH
Q 001002 260 NKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYLA 318 (1193)
Q Consensus 260 ~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~-il~yL~ 318 (1193)
+..+..........|-.+ =..|+..+... ..+++.+.+|||||.+.-+ +++++.
T Consensus 38 ~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~---~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 38 SRLLQNILDAGFQMPTPI--QMQAIPVMLHG---RELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp HHHHHHHHHTTCCSCCHH--HHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHH--HHHHHHHHhCC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 334444444333334333 34566665553 3499999999999988543 344443
No 470
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=58.22 E-value=5.2 Score=46.58 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.5
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHH
T ss_pred cCCceeEEeecCCCCCCCeEe
Confidence 578999999999999999886
No 471
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.18 E-value=3.1 Score=46.51 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il~yL 317 (1193)
..|+|.|++|+|||+.++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999886654
No 472
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=58.15 E-value=4.8 Score=40.31 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001002 294 QSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 294 QsIiisGESGaGKTet~k~il 314 (1193)
=-|+|.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999998877664
No 473
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=58.07 E-value=5.1 Score=40.42 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
.|+|.|.+|+|||+....++
T Consensus 50 ~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999998766553
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.80 E-value=5.1 Score=48.23 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHhhc--CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 285 NEMMGD--GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 285 ~~m~~~--~~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..++.. .....++|.|++|||||+.++.++-.+.
T Consensus 271 d~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 271 DEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp HHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345443 3567899999999999999998876654
No 475
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=57.54 E-value=6.8 Score=44.65 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.2
Q ss_pred hcCCceEEEEcCCCCCChhhHH
Q 001002 289 GDGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 289 ~~~~~QsIiisGESGaGKTet~ 310 (1193)
-++.|-||+-.|.+|||||.|+
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEec
Confidence 3688999999999999999997
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=57.48 E-value=4.7 Score=49.49 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.+.|.|+||||||+..|+|.-.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 457899999999999999998865543
No 477
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.42 E-value=5.4 Score=38.82 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.9
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001002 295 SIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~i 313 (1193)
-|+|.|.+|+|||+....+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999876554
No 478
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=57.25 E-value=5.4 Score=39.42 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHH
Q 001002 293 NQSIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 293 ~QsIiisGESGaGKTet~k~il 314 (1193)
.=.|+|.|.+|+|||+....++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998766554
No 479
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=57.23 E-value=5.7 Score=42.43 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
.|+..+...+ .+||.|++|+|||..+-.++..+
T Consensus 100 ~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 100 KALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 4555555442 38999999999999987776654
No 480
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=57.15 E-value=12 Score=41.19 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHHhhcCCceEEEEcCCCCCChhhHHHHH
Q 001002 261 KFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 313 (1193)
Q Consensus 261 ~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i 313 (1193)
...+..+..+...|..|.. .|+..+... +.+++.+++|+|||.+.-..
T Consensus 4 ~i~~~l~~~g~~~l~~~Q~--~~i~~i~~~---~~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 4 KIEQAIREMGFKNFTEVQS--KTIPLMLQG---KNVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp HHHHHHHHTTCCSCCHHHH--HHHHHHHTT---CCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHH--HHHHHHhcC---CCEEEEcCCCCcHHHHHHHH
Confidence 3444444445555665554 466666543 46999999999999875433
No 481
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.95 E-value=10 Score=46.23 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001002 1139 HPDVELRKLKMRFETWKKDYKTRLREAKVRLNK 1171 (1193)
Q Consensus 1139 ~~~~el~kLk~~lE~~kk~~e~rL~elk~eL~~ 1171 (1193)
++.....|=++ ++...+.+.++|..++.+-++
T Consensus 505 eR~~~~ekn~~-lq~qL~~L~~el~~~r~~~k~ 536 (575)
T 2i1j_A 505 DRRTLAERNER-LHNQLKALKQDLARSCDETKE 536 (575)
T ss_dssp GCCCHHHHCHH-HHHHHHHHHHHHHTTBCGGGC
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHhhhhhc
Confidence 34445555444 777778888888887755433
No 482
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=56.88 E-value=12 Score=39.19 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCceEEEEcCCCCCChhhHHHHH-HHHH
Q 001002 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYL 317 (1193)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGaGKTet~k~i-l~yL 317 (1193)
.|+..+... ..+++.+++|||||.+.-+. +.++
T Consensus 49 ~~i~~~~~~---~~~l~~apTGsGKT~~~~l~~~~~l 82 (228)
T 3iuy_A 49 QAWPIILQG---IDLIVVAQTGTGKTLSYLMPGFIHL 82 (228)
T ss_dssp HHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 555555543 46899999999999886543 4444
No 483
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=56.84 E-value=35 Score=30.03 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=40.4
Q ss_pred cCCcEEEEEc-CCCCEEEEEEEeecC--CeEEEEec-CCcEEEEeCCCcccCCCCcc
Q 001002 156 KKKLRVWCRL-EDGKWESGMIQSTSG--DEAFVLLS-NGNVVKVSTGELLPANPDIL 208 (1193)
Q Consensus 156 ~~~~~vw~~~-~~~~~~~~~v~~~~~--~~~~v~~~-~g~~~~v~~~~~~~~np~~~ 208 (1193)
+.+..|=.+- .++.|..|+|.++.+ +.+.|..- -|.+-+|+.++|.|..+..+
T Consensus 11 ~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll 67 (78)
T 2d9t_A 11 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAW 67 (78)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCCC
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHHh
Confidence 3355555554 478999999999875 66777754 59999999999999887654
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=56.74 E-value=6.8 Score=43.80 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001002 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1193)
Q Consensus 291 ~~~QsIiisGESGaGKTet~k~il~yL 317 (1193)
...+.|+|.|.+|+|||..+..+....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999999998776665443
No 485
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.61 E-value=5.2 Score=41.84 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.9
Q ss_pred EEEEcCCCCCChhhHHHH
Q 001002 295 SIIISGESGAGKTETAKF 312 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~ 312 (1193)
-++|+|..|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999987643
No 486
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=56.60 E-value=5.7 Score=38.46 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.2
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
.|+|.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998755443
No 487
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=56.52 E-value=1.3e+02 Score=35.34 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=12.4
Q ss_pred CCeeeEecCCCCCCCCCccchh
Q 001002 771 RPHFIRCIKPNSKQLPGIYEED 792 (1193)
Q Consensus 771 ~~hfIrCIkPN~~~~p~~fd~~ 792 (1193)
.|.=|.-||--....|+.|...
T Consensus 202 ~Pm~VPVVkA~pTarPgVysa~ 223 (551)
T 2b5u_A 202 VPMSCPVVDAKPTERPGVFTAS 223 (551)
T ss_dssp SCEEEEEEECEECSSTTCEEEC
T ss_pred CCceeeeeeccccCCCceEEec
Confidence 4555555555555566666543
No 488
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=56.51 E-value=6.6 Score=45.40 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.4
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 132 ~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 132 EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCEEEEEEESCTTSSHHHHH
T ss_pred cCCceEEEEecCCCCCCCeEe
Confidence 578999999999999999885
No 489
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=56.48 E-value=6.9 Score=44.29 Aligned_cols=21 Identities=52% Similarity=0.735 Sum_probs=19.6
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 688999999999999999886
No 490
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=56.38 E-value=5.5 Score=45.81 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=19.5
Q ss_pred cCCceEEEEcCCCCCChhhHH
Q 001002 290 DGVNQSIIISGESGAGKTETA 310 (1193)
Q Consensus 290 ~~~~QsIiisGESGaGKTet~ 310 (1193)
++.|-||+-.|.+|||||.|+
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 688999999999999999885
No 491
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=56.20 E-value=6.8 Score=50.48 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCChhhHHHHH--HHHHHHhc
Q 001002 292 VNQSIIISGESGAGKTETAKFA--MQYLAALG 321 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~i--l~yL~~~~ 321 (1193)
..+.++|+|.+|||||+..|.+ +.+++..|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999987 44555443
No 492
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=56.08 E-value=5.1 Score=48.45 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001002 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1193)
Q Consensus 292 ~~QsIiisGESGaGKTet~k~il~yL~ 318 (1193)
..+.+.|.|+||||||+..|.|.-.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999998865443
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=56.06 E-value=5.9 Score=38.49 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=16.4
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001002 295 SIIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 295 sIiisGESGaGKTet~k~il 314 (1193)
-|+|.|.+|+|||+....++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998765554
No 494
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=55.97 E-value=33 Score=30.07 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhhccccccCCCCcccccccchhccCCcEEEEEcCCCCEEEEEEEeec--CCeEEEEecCCcEEEEeCCCcccC
Q 001002 132 LEVNEMKSAKSGEVEWEDNLGYFIKKKLRVWCRLEDGKWESGMIQSTS--GDEAFVLLSNGNVVKVSTGELLPA 203 (1193)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~--~~~~~v~~~~g~~~~v~~~~~~~~ 203 (1193)
|.-+.-.++....+.-.+-..|-. +.-|-+...||-|.+|+|+.++ ++.+.|+.+||....+.-.|+.++
T Consensus 6 ~~~~~~~~p~~p~~~~~p~~~f~e--GeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 6 SGASSLWDPASPAPTSGPRPRLWE--GQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 77 (79)
T ss_dssp SCCCCCCCCSSCCCCCSCCCCCCT--TCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCCC
T ss_pred CCCCCCCCCCCCCCccCCcceecc--CCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccccc
No 495
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.86 E-value=1.4e+02 Score=35.42 Aligned_cols=113 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-------hhHhHhhcchHHHHHHHhcccccccccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001002 952 SAIRGWLVRKQLK-------MHKLKQSNPVNAKVKRRSGRKSSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEE 1024 (1193)
Q Consensus 952 s~~R~~laRr~~~-------l~~~~~~~q~~lr~~~ke~k~l~e~~~~l~~el~~l~~~l~eLe~r~~ele~~l~~le~E 1024 (1193)
|.+++.+.+.+.. ++......+.+-.....-.+.+.+.++..+.+.......+.++ .++|+..+..++++
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~---S~ELRRrIqyLKek 125 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRV---SEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHT---THHHHHHHHHHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHH---HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Q 001002 1025 NAALREQLQQYDAKWLEYEAKMKSMEEMW--------------------QKQMASLQMSLAAA 1067 (1193)
Q Consensus 1025 ~~~L~e~Le~~e~~~~ele~k~~klee~l--------------------q~~~~eLq~~l~el 1067 (1193)
+..--..|+.|+..+.++..+|++||-.. .+.-+.+|+||+.+
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
No 496
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=55.82 E-value=5.9 Score=38.71 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~ 315 (1193)
|+|.|.+|+|||+....++.
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
No 497
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=55.79 E-value=4.5 Score=49.69 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAM 314 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il 314 (1193)
|.|.|+||||||+..+.|+
T Consensus 48 iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp EECCCCTTSCHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHh
No 498
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=55.75 E-value=6 Score=38.60 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~ 315 (1193)
|+|.|.+|+|||+....++.
T Consensus 9 i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
No 499
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=55.61 E-value=12 Score=40.98 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhcC-C-ceEEEEcCCCCCChhhHHHHHHHH
Q 001002 277 YAIADTAYNEMMGDG-V-NQSIIISGESGAGKTETAKFAMQY 316 (1193)
Q Consensus 277 yavA~~Ay~~m~~~~-~-~QsIiisGESGaGKTet~k~il~y 316 (1193)
+...-.+....+... . .-+|+|.|..|+|||..++.|+++
T Consensus 86 ~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 86 PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
No 500
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=55.46 E-value=6 Score=39.01 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHHH
Q 001002 296 IIISGESGAGKTETAKFAMQ 315 (1193)
Q Consensus 296 IiisGESGaGKTet~k~il~ 315 (1193)
|+|.|.+|+|||+....++.
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Done!