Query 001003
Match_columns 1192
No_of_seqs 196 out of 586
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 13:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1896 mRNA cleavage and poly 100.0 1E-169 2E-174 1511.9 89.6 1038 3-1180 2-1123(1366)
2 KOG1897 Damage-specific DNA bi 100.0 2E-117 5E-122 1047.3 81.3 841 2-1188 1-863 (1096)
3 KOG1898 Splicing factor 3b, su 100.0 5.9E-95 1.3E-99 859.6 63.0 890 3-1172 2-954 (1205)
4 COG5161 SFT1 Pre-mRNA cleavage 100.0 9E-94 1.9E-98 827.3 60.5 974 1-1173 1-1061(1319)
5 PF10433 MMS1_N: Mono-function 100.0 7.3E-55 1.6E-59 532.3 44.1 451 131-712 1-501 (504)
6 PF03178 CPSF_A: CPSF A subuni 99.3 2.1E-12 4.6E-17 149.5 10.6 114 1063-1184 1-118 (321)
7 KOG2055 WD40 repeat protein [G 95.7 0.76 1.6E-05 53.8 19.1 223 837-1173 224-456 (514)
8 cd00200 WD40 WD40 domain, foun 95.3 5.4 0.00012 43.1 32.4 31 659-689 10-42 (289)
9 KOG1539 WD repeat protein [Gen 95.0 8.6 0.00019 48.5 25.9 81 661-781 205-287 (910)
10 PF08596 Lgl_C: Lethal giant l 94.8 4.2 9.1E-05 48.7 22.8 75 753-857 99-174 (395)
11 KOG1274 WD40 repeat protein [G 94.6 4.6 9.9E-05 51.3 22.7 122 950-1137 137-263 (933)
12 KOG2055 WD40 repeat protein [G 93.8 4.1 8.9E-05 48.0 18.9 44 975-1021 458-501 (514)
13 PF14727 PHTB1_N: PTHB1 N-term 93.4 4.8 0.0001 48.3 19.3 95 921-1017 251-354 (418)
14 cd00200 WD40 WD40 domain, foun 92.8 16 0.00036 39.3 31.4 47 967-1020 147-195 (289)
15 PF14727 PHTB1_N: PTHB1 N-term 91.7 30 0.00064 41.7 23.1 75 57-149 90-164 (418)
16 PF14783 BBS2_Mid: Ciliary BBS 90.8 5.8 0.00013 38.4 12.8 87 628-765 24-110 (111)
17 KOG0294 WD40 repeat-containing 89.8 41 0.00089 38.3 21.4 65 1108-1183 218-283 (362)
18 KOG0318 WD40 repeat stress pro 87.5 72 0.0016 38.7 21.0 145 577-773 376-521 (603)
19 KOG0294 WD40 repeat-containing 80.7 5.9 0.00013 44.7 8.1 83 657-778 42-124 (362)
20 KOG0283 WD40 repeat-containing 79.6 50 0.0011 41.9 16.4 206 659-997 370-577 (712)
21 KOG0318 WD40 repeat stress pro 78.6 1.7E+02 0.0036 35.8 30.8 60 1108-1178 454-514 (603)
22 KOG0650 WD40 repeat nucleolar 78.0 87 0.0019 38.6 17.0 27 752-778 413-439 (733)
23 COG5161 SFT1 Pre-mRNA cleavage 77.8 1.1 2.4E-05 56.0 1.5 91 99-206 87-177 (1319)
24 PF10282 Lactonase: Lactonase, 75.9 1.7E+02 0.0036 34.3 27.4 52 968-1021 156-210 (345)
25 KOG2110 Uncharacterized conser 72.5 2E+02 0.0043 33.7 17.6 154 611-857 89-249 (391)
26 PTZ00420 coronin; Provisional 71.5 1.2E+02 0.0026 38.2 17.1 148 974-1183 146-295 (568)
27 KOG2096 WD40 repeat protein [G 69.4 1.1E+02 0.0023 35.1 14.0 53 968-1022 100-152 (420)
28 KOG0310 Conserved WD40 repeat- 68.4 94 0.002 37.4 14.1 102 628-778 175-277 (487)
29 PF03178 CPSF_A: CPSF A subuni 67.7 2.4E+02 0.0051 32.6 21.0 144 575-770 41-203 (321)
30 KOG0316 Conserved WD40 repeat- 67.2 1.5E+02 0.0033 32.6 14.1 25 753-777 241-265 (307)
31 COG4247 Phy 3-phytase (myo-ino 66.5 77 0.0017 35.2 11.9 130 604-770 50-187 (364)
32 COG2706 3-carboxymuconate cycl 66.1 1E+02 0.0023 35.7 13.5 72 130-208 202-275 (346)
33 KOG0772 Uncharacterized conser 63.8 60 0.0013 39.2 11.3 69 670-773 283-351 (641)
34 KOG0295 WD40 repeat-containing 63.4 1.2E+02 0.0026 35.3 13.2 66 668-774 304-369 (406)
35 KOG0285 Pleiotropic regulator 61.9 94 0.002 36.0 12.0 60 751-855 163-222 (460)
36 KOG1273 WD40 repeat protein [G 61.6 2.2E+02 0.0048 32.7 14.6 19 838-856 35-53 (405)
37 KOG2048 WD40 repeat protein [G 61.4 4.3E+02 0.0093 33.4 30.6 60 1108-1178 486-545 (691)
38 KOG0645 WD40 repeat protein [G 61.4 2.8E+02 0.0061 31.3 15.7 135 976-1179 37-178 (312)
39 KOG0299 U3 snoRNP-associated p 59.3 88 0.0019 37.4 11.6 107 620-778 257-365 (479)
40 KOG0289 mRNA splicing factor [ 59.0 3.8E+02 0.0082 32.1 16.4 99 575-686 314-419 (506)
41 KOG3881 Uncharacterized conser 57.5 22 0.00048 41.4 6.3 92 1064-1179 226-318 (412)
42 PF08662 eIF2A: Eukaryotic tra 57.3 2.4E+02 0.0052 30.2 14.1 121 994-1181 50-179 (194)
43 KOG2110 Uncharacterized conser 56.4 3.6E+02 0.0078 31.7 15.5 26 832-857 306-331 (391)
44 KOG1898 Splicing factor 3b, su 56.1 4.4E+02 0.0095 35.2 17.6 64 923-986 732-796 (1205)
45 KOG1036 Mitotic spindle checkp 55.4 3.7E+02 0.0081 30.8 22.4 74 620-712 26-102 (323)
46 PLN00181 protein SPA1-RELATED; 55.0 6.3E+02 0.014 33.3 35.2 28 659-686 484-513 (793)
47 PRK11028 6-phosphogluconolacto 54.0 3.9E+02 0.0085 30.7 17.2 52 969-1021 139-193 (330)
48 KOG1036 Mitotic spindle checkp 53.8 4E+02 0.0086 30.6 27.0 170 915-1142 137-322 (323)
49 KOG1539 WD repeat protein [Gen 51.3 6.8E+02 0.015 32.6 42.5 77 659-773 451-527 (910)
50 KOG1446 Histone H3 (Lys4) meth 50.3 4.5E+02 0.0097 30.2 24.0 162 939-1136 89-262 (311)
51 KOG0291 WD40-repeat-containing 50.1 6.8E+02 0.015 32.3 43.7 263 605-1024 261-542 (893)
52 KOG0276 Vesicle coat complex C 50.0 6.3E+02 0.014 31.8 20.9 45 969-1022 437-481 (794)
53 KOG0296 Angio-associated migra 49.2 4.4E+02 0.0095 31.0 14.7 117 603-778 112-229 (399)
54 PF10282 Lactonase: Lactonase, 49.1 4.9E+02 0.011 30.4 29.6 52 966-1021 254-310 (345)
55 KOG1274 WD40 repeat protein [G 48.4 7.7E+02 0.017 32.4 19.8 53 628-689 117-171 (933)
56 KOG1273 WD40 repeat protein [G 48.1 4.9E+02 0.011 30.1 18.4 61 1108-1179 260-320 (405)
57 KOG0650 WD40 repeat nucleolar 47.9 6.6E+02 0.014 31.5 20.0 92 924-1021 570-669 (733)
58 KOG0263 Transcription initiati 47.5 1.3E+02 0.0029 38.1 11.1 66 1108-1186 588-654 (707)
59 KOG0263 Transcription initiati 46.2 4.7E+02 0.01 33.5 15.5 110 611-770 529-650 (707)
60 PF02333 Phytase: Phytase; In 45.5 2.9E+02 0.0064 32.9 13.3 61 678-769 127-189 (381)
61 KOG0288 WD40 repeat protein Ti 45.4 2.1E+02 0.0046 33.9 11.6 93 1066-1178 365-458 (459)
62 KOG0291 WD40-repeat-containing 44.5 8.2E+02 0.018 31.6 52.6 137 536-690 286-426 (893)
63 KOG1897 Damage-specific DNA bi 42.0 2.4E+02 0.0052 37.2 12.3 64 5-119 764-838 (1096)
64 KOG0277 Peroxisomal targeting 41.2 34 0.00075 37.8 4.4 67 1109-1180 21-90 (311)
65 KOG2048 WD40 repeat protein [G 40.6 8.7E+02 0.019 30.8 19.6 28 179-206 477-504 (691)
66 TIGR02276 beta_rpt_yvtn 40-res 40.5 64 0.0014 24.6 4.8 40 967-1011 3-42 (42)
67 PF08596 Lgl_C: Lethal giant l 39.4 1E+02 0.0022 37.0 8.5 28 751-778 272-299 (395)
68 KOG2066 Vacuolar assembly/sort 38.5 1.4E+02 0.003 38.3 9.4 85 921-1017 135-220 (846)
69 PTZ00421 coronin; Provisional 38.5 7.3E+02 0.016 30.8 16.0 31 658-688 75-108 (493)
70 KOG0319 WD40-repeat-containing 38.1 9.9E+02 0.021 30.7 28.7 164 941-1180 225-394 (775)
71 KOG0278 Serine/threonine kinas 37.7 5.3E+02 0.011 28.9 12.5 117 994-1178 177-294 (334)
72 KOG0293 WD40 repeat-containing 37.7 7.9E+02 0.017 29.5 18.3 148 826-1024 226-376 (519)
73 KOG0295 WD40 repeat-containing 36.7 5.2E+02 0.011 30.4 12.8 62 750-856 303-364 (406)
74 KOG0293 WD40 repeat-containing 36.7 4.4E+02 0.0096 31.4 12.4 102 577-690 367-474 (519)
75 KOG0283 WD40 repeat-containing 36.5 2E+02 0.0044 36.7 10.5 77 659-777 410-489 (712)
76 COG2706 3-carboxymuconate cycl 36.4 7.7E+02 0.017 28.9 26.9 68 130-210 51-122 (346)
77 PF12341 DUF3639: Protein of u 36.1 74 0.0016 22.9 3.9 24 660-683 3-26 (27)
78 KOG0647 mRNA export protein (c 35.5 7.4E+02 0.016 28.5 21.3 93 925-1023 169-272 (347)
79 KOG0772 Uncharacterized conser 33.6 2.3E+02 0.005 34.6 9.8 161 574-780 225-406 (641)
80 KOG4649 PQQ (pyrrolo-quinoline 32.9 4.5E+02 0.0098 29.6 11.1 73 361-439 52-124 (354)
81 KOG4378 Nuclear protein COP1 [ 32.9 6.2E+02 0.013 30.9 13.0 82 659-779 122-205 (673)
82 PLN00181 protein SPA1-RELATED; 32.7 1.3E+03 0.028 30.4 27.2 73 658-771 575-650 (793)
83 KOG2445 Nuclear pore complex c 31.8 3.5E+02 0.0076 31.1 10.3 23 751-773 126-149 (361)
84 KOG0299 U3 snoRNP-associated p 30.9 6.7E+02 0.015 30.3 12.8 32 659-690 328-360 (479)
85 KOG1407 WD40 repeat protein [F 30.9 4.5E+02 0.0097 29.6 10.7 40 977-1023 254-293 (313)
86 KOG0289 mRNA splicing factor [ 30.3 7E+02 0.015 30.0 12.7 110 662-855 309-418 (506)
87 PTZ00420 coronin; Provisional 29.7 1.3E+03 0.027 29.4 29.3 29 659-687 75-106 (568)
88 PRK11028 6-phosphogluconolacto 29.6 6E+02 0.013 29.1 12.8 84 101-207 25-110 (330)
89 PF00780 CNH: CNH domain; Int 29.5 8.1E+02 0.018 27.1 24.1 22 663-685 2-23 (275)
90 KOG0645 WD40 repeat protein [G 28.9 6.5E+02 0.014 28.5 11.6 91 1065-1180 38-134 (312)
91 KOG0292 Vesicle coat complex C 28.0 1.5E+03 0.034 29.9 22.2 97 910-1021 281-384 (1202)
92 PF12894 Apc4_WD40: Anaphase-p 27.9 95 0.0021 25.3 3.9 40 101-148 2-41 (47)
93 PF06977 SdiA-regulated: SdiA- 27.5 96 0.0021 34.8 5.3 60 375-438 184-248 (248)
94 KOG0319 WD40-repeat-containing 27.0 9.3E+02 0.02 31.0 13.7 74 661-770 368-443 (775)
95 KOG0296 Angio-associated migra 26.6 4.8E+02 0.01 30.7 10.4 56 753-855 300-355 (399)
96 KOG0266 WD40 repeat-containing 25.5 1.3E+03 0.028 28.1 17.0 77 659-774 289-369 (456)
97 TIGR02658 TTQ_MADH_Hv methylam 25.4 1.2E+03 0.026 27.7 27.1 139 921-1096 147-305 (352)
98 KOG0266 WD40 repeat-containing 25.3 1.3E+03 0.028 28.1 18.2 74 659-773 247-322 (456)
99 KOG0285 Pleiotropic regulator 25.3 5.3E+02 0.012 30.3 10.4 68 631-713 259-328 (460)
100 KOG0275 Conserved WD40 repeat- 24.9 9.6E+02 0.021 27.7 12.1 53 660-717 265-319 (508)
101 KOG0279 G protein beta subunit 24.4 1.1E+03 0.024 26.9 16.5 119 659-856 193-313 (315)
102 KOG0276 Vesicle coat complex C 23.8 1.6E+03 0.034 28.6 17.8 102 629-778 77-180 (794)
103 PF02239 Cytochrom_D1: Cytochr 22.9 4.6E+02 0.01 31.2 10.2 67 969-1085 50-117 (369)
104 KOG0282 mRNA splicing factor [ 22.8 3E+02 0.0065 33.3 8.2 78 935-1023 242-321 (503)
105 PTZ00421 coronin; Provisional 22.4 1.5E+03 0.033 28.0 23.3 77 659-776 126-205 (493)
106 PF14781 BBS2_N: Ciliary BBSom 22.3 2.1E+02 0.0046 28.9 5.9 44 103-152 40-83 (136)
107 PF06977 SdiA-regulated: SdiA- 22.0 6.5E+02 0.014 28.2 10.5 92 925-1022 35-137 (248)
108 COG4257 Vgb Streptogramin lyas 22.0 8.5E+02 0.018 27.8 10.9 80 925-1019 39-120 (353)
109 KOG0288 WD40 repeat protein Ti 21.5 8.5E+02 0.018 29.2 11.3 24 753-776 401-424 (459)
110 KOG0306 WD40-repeat-containing 21.2 1.9E+03 0.041 28.5 24.7 113 310-439 327-443 (888)
111 KOG2096 WD40 repeat protein [G 21.1 1.3E+03 0.029 26.7 18.2 72 947-1021 273-350 (420)
112 PF14781 BBS2_N: Ciliary BBSom 20.8 2.7E+02 0.0058 28.2 6.3 39 1089-1140 47-85 (136)
113 KOG0639 Transducin-like enhanc 20.8 6.5E+02 0.014 30.8 10.3 26 752-777 522-547 (705)
114 KOG2314 Translation initiation 20.4 7.1E+02 0.015 31.0 10.6 129 977-1173 426-558 (698)
115 KOG1517 Guanine nucleotide bin 20.2 1.9E+03 0.041 29.8 14.8 192 578-854 1179-1379(1387)
116 COG3204 Uncharacterized protei 20.1 5.3E+02 0.012 29.6 9.1 91 924-1021 98-199 (316)
No 1
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1e-169 Score=1511.92 Aligned_cols=1038 Identities=39% Similarity=0.642 Sum_probs=850.9
Q ss_pred chhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCcccc
Q 001003 3 FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESK 82 (1192)
Q Consensus 3 ~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~~~ 82 (1192)
|++|++.|+||+|+||++|+||+.... ||||+++|.|+||+++.++.+.+.
T Consensus 2 ~~vykq~h~~T~ve~s~ag~Ft~~~~~---------------------------nlvV~~~N~L~vyri~~~~e~~t~-- 52 (1366)
T KOG1896|consen 2 FAVYKQEHDPTVVENSSAGLFTNNRTE---------------------------NLVVAGTNILRVYRISRDAEALTK-- 52 (1366)
T ss_pred cchhhhccCchhhccceeeeEecCCCc---------------------------ceEEecccEEEEEEeccchhhccc--
Confidence 689999999999999999999987765 999999999999999865322100
Q ss_pred CCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeeeee
Q 001003 83 NSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCF 162 (1192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh~~ 162 (1192)
.....+.+..+.||+|+++|.+||+|++|++++..|+ .+|+|+++|++||+|++|||+.+|+|+|.|||||
T Consensus 53 -----~~~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHyf 123 (1366)
T KOG1896|consen 53 -----NDPGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHYF 123 (1366)
T ss_pred -----cCccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEEe
Confidence 1122344445567999999999999999999999987 6999999999999999999999999999999999
Q ss_pred eccccccccCCcccccCCCeEEECCCCcEEEEEEcCceEEEEeCccCCCCCCCCCCCCCCCCCccceeeceEEEEccccC
Q 001003 163 ESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLD 242 (1192)
Q Consensus 163 E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~ld 242 (1192)
|.++ .+.|++....+|.++|||++||++|++|+..|+||||++.+ .+++++.. ..+....+.+.+||+|.+.+||
T Consensus 124 E~~~---~~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~~~-~~~~~~ss~~~pSyvi~~reLd 198 (1366)
T KOG1896|consen 124 EGPE---FRKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEELF-PSGFSKSSFTAPSYVIALRELD 198 (1366)
T ss_pred cccc---ccccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccccc-cccccccccccceeEEEhhhhh
Confidence 9986 45566666778999999999999999999999999998863 24433322 2223334578999999999998
Q ss_pred --ccceeeeeeccCCcccEEEEEEecCCCcccceeeeeeeeEEEEEEEeeccceeeeeeeeccCCcccceeEEecCCCCe
Q 001003 243 --MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGG 320 (1192)
Q Consensus 243 --i~~V~D~~FL~gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l~~~sLdl~~k~~~~i~s~~~Lp~d~~~LipvP~p~GG 320 (1192)
|+||+|++|||||++||+||||||.+||+||+..|+|||.+++++||+++|.||+||++.+||+||+.+.+||.|+||
T Consensus 199 eki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piGg 278 (1366)
T KOG1896|consen 199 EKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIGG 278 (1366)
T ss_pred hhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCcc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecceEEEEeCCC-ceeEeccccccccCCCccCcCCCceeEeeceeeEEeeCcEEEEEcCCCCEEEEEEEEC-CceE
Q 001003 321 VLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRVV 398 (1192)
Q Consensus 321 vLVig~n~I~y~d~~~-~~~~a~N~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Ll~~~~G~L~~l~l~~d-g~~V 398 (1192)
|||++.|.++|++|++ ++++++|++++..+.++.+||+.+++.|+++..+|++.+++++++.+|++|+|+|.+| +|.|
T Consensus 279 vLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~V 358 (1366)
T KOG1896|consen 279 VLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRSV 358 (1366)
T ss_pred EEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccch
Confidence 9999999999999998 5999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred eeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEeeCCCcccccCCCccccCCcccCCccchhccCCCcchhhcc
Q 001003 399 QRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDM 478 (1192)
Q Consensus 399 ~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~d~~ 478 (1192)
+.+++.++..+++++|++-..+++||+||+.|||+|+||+++...+. .+...|+.+.+....+.++.+...+..+||.
T Consensus 359 ~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~~--e~~~re~~d~~~~~~~~~~~d~~~d~~~~d~ 436 (1366)
T KOG1896|consen 359 QLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRAS--EGVRREEGDTESDGYSKKRVDDTQDVRRDDE 436 (1366)
T ss_pred hhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccCC--ccccccccCCcCCcchhhcccchhhhhhhhh
Confidence 99999999999999999999999999999999999999998764221 2222222222222223333221111111111
Q ss_pred cCcccc------ccccCCCCCccccccceeEEEEeeecccCCccccccccccCCCC---------------CccCCCCCC
Q 001003 479 VNGEEL------SLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA---------------SATGISKQS 537 (1192)
Q Consensus 479 ~~~~e~------~ly~~~~~~~~~~~~~~~~~v~Dsl~NigPI~D~~vg~~~~~~~---------------~~sG~g~~g 537 (1192)
.-++. .-||+++..+. ..+.|++||+|+|||||.||++|...+.+. .|+|.|++|
T Consensus 437 -~~~~~~~~g~~~~~g~~a~~t~---~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkng 512 (1366)
T KOG1896|consen 437 -KSAELFEAGSEENYGSGAQETV---QPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVATSGHGKNG 512 (1366)
T ss_pred -hccchhhccccccCCcccceee---eeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEEeccCCCCc
Confidence 00111 22333322211 238899999999999999999998654221 278999999
Q ss_pred ceEE------------EeCCCcCEEEEEEecCCCCCCCCcccccccCCCcceEEEEEeccceEEEEecCceeeeecccCc
Q 001003 538 NYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDY 605 (1192)
Q Consensus 538 sL~i------------~eLpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF 605 (1192)
.|.+ ++||||.++|||..+....+ .++.-|.||++|..++|+||++|+++.|++. .+|
T Consensus 513 aL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~Ev~~-s~f 582 (1366)
T KOG1896|consen 513 ALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELLEVSG-SGF 582 (1366)
T ss_pred ceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhhhccc-cee
Confidence 9987 78999999999998654322 2334599999999999999999999999975 589
Q ss_pred cccCCcEEEEeeCCCCEEEEEecCcEEEEeCC-cceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEE
Q 001003 606 FVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLV 684 (1192)
Q Consensus 606 ~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~-~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~ 684 (1192)
..+++||++|+++++++|||||++++|++|++ .+.|.+++. .+..+++++++||||+|....|.|.+|.
T Consensus 583 ~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd----------~~~~vv~~sv~dpyv~v~~~~g~i~~~~ 652 (1366)
T KOG1896|consen 583 TRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD----------SGAIVVQTSVADPYVAVRSSEGRITLYD 652 (1366)
T ss_pred EeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc----------cCCcEEEEeccCceEEEEEcCCceEEEE
Confidence 99999999999999999999999999999995 578888882 3456999999999999999999999999
Q ss_pred ecCCCceEeeccccccccCCCceeEEEeeccCCC-------------CCcccccccccccccCccccccCCCCCCCCCCc
Q 001003 685 GDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGP-------------EPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGD 751 (1192)
Q Consensus 685 ~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1192)
++.+..+|-+.++ + ...+.++++|.|.+. .+|.+.. ++.+..... ..+++.+++...+..
T Consensus 653 l~~~s~rl~~~~~--~---s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~-~~~~~~~~~-~kv~~~egg~~~~~~ 725 (1366)
T KOG1896|consen 653 LEEKSHRLALHDP--M---SFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSS-EAEGLQSLP-CKVDDEEGGSPEQEP 725 (1366)
T ss_pred eccccchhhccCc--c---cceeEEEechhhhccceEEEeeecccCcccccccc-cccccccCC-ccccCCCCCCcccCc
Confidence 9887666655554 2 345666677766542 2222222 111111111 334433322222223
Q ss_pred EEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEee
Q 001003 752 IYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQR 831 (1192)
Q Consensus 752 ~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~ 831 (1192)
+||++++++|.|+||++|++++||.++.|+.++++|.|+....++.. +...+..+.++...+
T Consensus 726 ~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~------------------~~s~~~~l~q~~~~~ 787 (1366)
T KOG1896|consen 726 YWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTN------------------KESEDLELKQLFVNP 787 (1366)
T ss_pred eEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCcccc------------------ccccchHHHHhhccc
Confidence 99999999999999999999999999999999999988533222100 001124567777888
Q ss_pred cCCC--CCccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCC----
Q 001003 832 WSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREET---- 905 (1192)
Q Consensus 832 ~g~~--~~~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~---- 905 (1192)
+|.+ ..+|||+..+.+|++++|++|+.. + ++..+++|+|+|++...++.+
T Consensus 788 L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~---~---------------------~~~~~~~f~kvp~~~~~~~~~p~~~ 843 (1366)
T KOG1896|consen 788 LGSEIVFKEPHLFLVVSDNEILIYKAFPQL---S---------------------QGNLKVFFKKVPHNLNIRTDKPHFL 843 (1366)
T ss_pred cchhhhccCCceEEEEeCceEEEEeecccc---C---------------------ccchhhhhhhCCHhhcccccCCccc
Confidence 8877 789999999999999999999611 1 111256899999866543321
Q ss_pred -------------CCCCCccceEEeeccCCceEEEEcCCCCeEEEE-eCCceEEEecCCCCceeEEecccCCCCCCcEEE
Q 001003 906 -------------PHGAPCQRITIFKNISGHQGFFLSGSRPCWCMV-FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIY 971 (1192)
Q Consensus 906 -------------~~~~g~~~l~~f~~i~G~~gVF~~G~rP~wi~~-~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~ 971 (1192)
..+...+++++|++++||+|||+||++|+||+. .+|.+++||+.+.++|.+|+||||+|||+||+|
T Consensus 844 ~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiy 923 (1366)
T KOG1896|consen 844 CKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIY 923 (1366)
T ss_pred chhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEE
Confidence 122345689999999999999999999999998 599999999999999999999999999999999
Q ss_pred EEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCC
Q 001003 972 VTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLS 1051 (1192)
Q Consensus 972 ~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~ 1051 (1192)
|+.++.++||.+|+...||+.||+|| |||++|||+++||++.++|+|+++.+. ++ +. .++|..+ +..+
T Consensus 924 vd~~~~l~i~~lp~~~~Ydn~wPvkk-Ipl~~T~~~vvYh~e~~vy~v~t~~~~--~~---~~--~~~d~~e----~~~~ 991 (1366)
T KOG1896|consen 924 VDRQGELVICVLPEALSYDNKWPVKK-IPLRKTPHQVVYHYEKKVYAVITSTPV--PY---ER--LGEDGEE----EVIS 991 (1366)
T ss_pred ECCCceEEEEEcchhcccCCCCcccc-cccccchhheeeeccceEEEEEEeccc--ee---ee--ccccccc----cccc
Confidence 99999999999999999999999999 999999999999999999999998752 22 22 2333221 1345
Q ss_pred ccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEecc-ccCCCCceEEEEEeccccCcccccCceE
Q 001003 1052 SVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFN-TTTKENETLLAIGTAYVQGEDVAARGRV 1130 (1192)
Q Consensus 1052 ~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s-~~t~~~~~ylaVGTa~~~gEd~~~rGRI 1130 (1192)
.+|..+.|+.++|+|+|++|. +|++++.|+|++||||++||.|.|.+ ++++++|+||||||++++|||.|+||||
T Consensus 992 ~de~~~~p~~~~f~i~LisP~----sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~ 1067 (1366)
T KOG1896|consen 992 RDENVIHPEGEQFSIQLISPE----SWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRI 1067 (1366)
T ss_pred ccccccccccccceeEEecCC----ccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccE
Confidence 678889999999999999995 99999999999999999999999995 4567789999999999999999999999
Q ss_pred EEEEeee---CCCCCceeEeecccCcccccchhcccCceEEEeecc---------eEEeeeh
Q 001003 1131 LLFSTGR---NADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS---------FVFVFLF 1180 (1192)
Q Consensus 1131 lvfev~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~~ 1180 (1192)
+|||||+ +|++|.|.+ |+|-+|. +|.||++.|.|.++ ||+||-|
T Consensus 1068 hi~diIeVVPepgkP~t~~---KlKel~~---eE~KGtVsavceV~G~l~~~~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1068 HIFDIIEVVPEPGKPFTKN---KLKELYI---EEQKGTVSAVCEVRGHLLSSQGQKIIVRKL 1123 (1366)
T ss_pred EEEEEEEecCCCCCCcccc---eeeeeeh---hhcccceEEEEEeccEEEEccCcEEEEEEe
Confidence 9999997 999999999 9999999 99999999999988 7888777
No 2
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-117 Score=1047.32 Aligned_cols=841 Identities=20% Similarity=0.304 Sum_probs=688.1
Q ss_pred cchhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCccc
Q 001003 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1192)
Q Consensus 2 ~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~~ 81 (1192)
+|+|+.++|+||+|.+|+.||||++... ||+|||+|+|+||.+.++ |
T Consensus 1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~---------------------------nlivAk~~~lei~~~~~~--G---- 47 (1096)
T KOG1897|consen 1 SMNYVVTAQKPTAVVTAVVGNFTSPENL---------------------------NLIVAKGNRLEILLVEPN--G---- 47 (1096)
T ss_pred CeeEEEEecCCceEeEEEeecccCccce---------------------------eeeeeccceEEEEeeccc--c----
Confidence 5889999999999999999999999876 999999999999998643 6
Q ss_pred cCCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeeee
Q 001003 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh~ 161 (1192)
|+.+++.++||+|..|+.||+++. .+|+|+|+|+++++++|+||.+..+..|+....
T Consensus 48 -------------------Lq~i~sv~ifg~I~~i~~fRp~g~----~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~ 104 (1096)
T KOG1897|consen 48 -------------------LQPITSVPIFGTIATIALFRPPGS----DKDYLFVATDSYRYFILEWDEESIQVVTRAHGD 104 (1096)
T ss_pred -------------------ceeeEeeccceeEEEEEeecCCCC----CcceEEEEECcceEEEEEEccccceEEEEeccc
Confidence 999999999999999999999987 799999999999999999999767777766655
Q ss_pred eeccccccccCCcccccCCCeEEECCCCcEEEEEEcCceEEEEeCccCCCCCCCCCCCCCCCCCccceeeceEEEEcccc
Q 001003 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1192)
Q Consensus 162 ~E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~l 241 (1192)
. ..|.| |+..+|++++|||.+|.|++++|++.+.+||+...+.. ........|.+++.++
T Consensus 105 v------~dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sh-------------t~~s~l~~fn~rfdel 164 (1096)
T KOG1897|consen 105 V------SDRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESH-------------TGGSLLKAFNVRFDEL 164 (1096)
T ss_pred c------ccccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccc-------------cCcccccccccccCcc
Confidence 2 35788 55799999999999999999999999999999754210 1112346788999888
Q ss_pred CccceeeeeeccCCcccEEEEEEecCCCcccceeeeeeeeEEEEEEEeeccce-eeeeeeeccCCcccceeEEecCCCCe
Q 001003 242 DMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQ-HPLIWSAMNLPHDAYKLLAVPSPIGG 320 (1192)
Q Consensus 242 di~~V~D~~FL~gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l~~~sLdl~~k~-~~~i~s~~~Lp~d~~~LipvP~p~GG 320 (1192)
||.||+||||...||+|+||++.. || ++..|.||+..|. ....|+ +++..++..+||||.|.||
T Consensus 165 ---~v~Di~fly~~s~pt~~vly~Ds~---~~--------Hv~~yelnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gG 229 (1096)
T KOG1897|consen 165 ---NVYDIKFLYGCSDPTLAVLYKDSD---GR--------HVKTYELNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGG 229 (1096)
T ss_pred ---eEEEEEEEcCCCCCceEEEEEcCC---Cc--------EEEEEEeccchhhccccccc-cccccCCceeeecCCCCce
Confidence 999999999999999999999874 43 4558899998665 456899 8999999999999999999
Q ss_pred EEEEecceEEEEeCCCceeEeccccccccCCCccCcCCCceeEeeceeeEEeeCcEEEEEcCCCCEEEEEEEECCceEee
Q 001003 321 VLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQR 400 (1192)
Q Consensus 321 vLVig~n~I~y~d~~~~~~~a~N~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Ll~~~~G~L~~l~l~~dg~~V~~ 400 (1192)
|||+|++.|+|.++....+++ ++ ..++.. +. +....-.+..+|||+|++|.||+|.+...+.+|++
T Consensus 230 vlV~ge~~I~Y~~~~~~~ai~--p~--------~~~~~t--~~--~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~ 295 (1096)
T KOG1897|consen 230 VLVIGEEFIVYMSGDNFVAIA--PL--------TAEQST--IV--CYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSG 295 (1096)
T ss_pred EEEEeeeEEEEeeCCceeEec--cc--------ccCCce--EE--EcccccCCccEEEEecCCCcEEEEEeecccccccc
Confidence 999999999999997544332 21 112221 10 00011134457999999999999999988888888
Q ss_pred --EEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEeeCCCcccccCCCccccCCcccCCccchhccCCCcchhhcc
Q 001003 401 --LDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDM 478 (1192)
Q Consensus 401 --l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~d~~ 478 (1192)
|+++|+|++++|+||+||++|+||+||++|||||+++...+ |
T Consensus 296 ~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~----------------------------------d-- 339 (1096)
T KOG1897|consen 296 LDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEP----------------------------------D-- 339 (1096)
T ss_pred eEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccC----------------------------------C--
Confidence 99999999999999999999999999999999999987531 0
Q ss_pred cCccccccccCCCCCccccccceeEEEEeeecccCCcccccccccc--CCCC--CccCCCCCCceEE------------E
Q 001003 479 VNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRI--NADA--SATGISKQSNYEL------------V 542 (1192)
Q Consensus 479 ~~~~e~~ly~~~~~~~~~~~~~~~~~v~Dsl~NigPI~D~~vg~~~--~~~~--~~sG~g~~gsL~i------------~ 542 (1192)
...+..++++++|||||.||+|.+.. ++.+ +|||++++|+||+ +
T Consensus 340 --------------------~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i 399 (1096)
T KOG1897|consen 340 --------------------VGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASI 399 (1096)
T ss_pred --------------------CCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEe
Confidence 02346789999999999999997754 2222 6999999999999 6
Q ss_pred eCCCcCEEEEEEecCCCCCCCCcccccccCCCcceEEEEEeccceEEEEecCceeeeecccCccccCCcEEEEeeCCCCE
Q 001003 543 ELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRR 622 (1192)
Q Consensus 543 eLpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~~TI~ag~l~~~~~ 622 (1192)
+|||+++||++|.. .+++||.|||+||.++|+||.+++++||.. ..||.++++||+|++++ ++.
T Consensus 400 ~l~Gikg~w~lk~~--------------v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~-~~gf~~~~~Tif~S~i~-g~~ 463 (1096)
T KOG1897|consen 400 DLPGIKGMWSLKSM--------------VDENYDNYLVLSFISETRVLNISEEVEETE-DPGFSTDEQTIFCSTIN-GNQ 463 (1096)
T ss_pred ecCCccceeEeecc--------------ccccCCcEEEEEeccceEEEEEccceEEec-cccccccCceEEEEccC-Cce
Confidence 89999999999964 567899999999999999999999999985 47999999999999995 566
Q ss_pred EEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeecccccccc
Q 001003 623 VIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIES 702 (1192)
Q Consensus 623 IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~ 702 (1192)
|+|||+++|||+++..+.. +|.+| .+..|..++.+..+|+|+..++.+.++..+..+. .......+
T Consensus 464 lvQvTs~~iRl~ss~~~~~---------~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l--~e~~~~~~-- 529 (1096)
T KOG1897|consen 464 LVQVTSNSIRLVSSAGLRS---------EWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL--REVSHKEF-- 529 (1096)
T ss_pred EEEEecccEEEEcchhhhh---------cccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccce--eeeeehee--
Confidence 9999999999999874433 78887 7778888999999999999888888888776552 22233333
Q ss_pred CCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeecccc
Q 001003 703 SKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVS 782 (1192)
Q Consensus 703 ~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~ 782 (1192)
..+++|+ |.+|.+ .....+....+..|++-++.|..+||+.+++....
T Consensus 530 -e~evaCL----Disp~~------------------------d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l--- 577 (1096)
T KOG1897|consen 530 -EYEVACL----DISPLG------------------------DAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL--- 577 (1096)
T ss_pred -cceeEEE----ecccCC------------------------CCCCcceEEEEEeecceEEEEEECCCcceeeeecc---
Confidence 4566654 666531 00112334444599999999999999888766531
Q ss_pred ccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEEeeecCCC
Q 001003 783 GRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPE 862 (1192)
Q Consensus 783 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~~~~~~~ 862 (1192)
. . +..+++|++..++ .++-||++.++||.|+.|.++...+
T Consensus 578 -~-~----------------------------------~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~tg-- 617 (1096)
T KOG1897|consen 578 -S-G----------------------------------EIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDINTG-- 617 (1096)
T ss_pred -C-C----------------------------------CccchheeeEEee--ccceEEEEEcCCceEEEEEEEcccc--
Confidence 1 0 1234468888885 3489999999999999999874221
Q ss_pred CCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCCCCCCCccceE--EeeccCCceEEEEcCCCCeEEEEeC
Q 001003 863 NTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRIT--IFKNISGHQGFFLSGSRPCWCMVFR 940 (1192)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~~~~~g~~~l~--~f~~i~G~~gVF~~G~rP~wi~~~~ 940 (1192)
.+ +++|. + .+|.+|+. .|.+.+ .++||+||+||+.+|+++
T Consensus 618 ---~l---------------sd~Kk---~----------------~lGt~P~~Lr~f~sk~-~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 618 ---QL---------------SDRKK---V----------------TLGTQPISLRTFSSKS-RTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ---eE---------------ccccc---c----------------ccCCCCcEEEEEeeCC-ceEEEEeCCCCEEEEecC
Confidence 11 12221 1 15777655 555544 489999999996667789
Q ss_pred CceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEE
Q 001003 941 ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 941 g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~ 1020 (1192)
|+|.+.|+ +.+.+..+|||++..||+++++++.. +|+|++|++++++ ++|+ ||++++||||+||+.+.+|+|.
T Consensus 660 ~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~~~-~l~i~tid~iqkl----~irt-vpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 660 GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASANGG-ALTIGTIDEIQKL----HIRT-VPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred CcEEEecc-chHHhhhhcccccccCCceEEEecCC-ceEEEEecchhhc----ceee-ecCCCChhheEecccceEEEEE
Confidence 99999997 77999999999999999998888776 9999999999976 9999 9999999999999999999998
Q ss_pred EeecCccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEe
Q 001003 1021 VSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTL 1100 (1192)
Q Consensus 1021 ~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L 1100 (1192)
+.+-+. ..+. ..++.+.++++++|+. ||++++.++|++||.+.|+.+++|
T Consensus 733 s~r~e~----------~~~~----------------~~ee~~~s~l~vlD~n----Tf~vl~~hef~~~E~~~Si~s~~~ 782 (1096)
T KOG1897|consen 733 SNRIES----------SAEY----------------YGEEYEVSFLRVLDQN----TFEVLSSHEFERNETALSIISCKF 782 (1096)
T ss_pred eccccc----------chhh----------------cCCcceEEEEEEecCC----ceeEEeeccccccceeeeeeeeee
Confidence 875310 1110 0122578899999985 999999999999999999999999
Q ss_pred ccccCCCCceEEEEEeccccC-cccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecceEEeee
Q 001003 1101 FNTTTKENETLLAIGTAYVQG-EDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFL 1179 (1192)
Q Consensus 1101 ~s~~t~~~~~ylaVGTa~~~g-Ed~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1179 (1192)
. .+ ...|++|||+++++ |++|..|||+||++.+ ..++|.+|++.+-|+++++++ |||+++|.. +++|++|+
T Consensus 783 ~---~d-~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~--fngkllA~I-n~~vrLye 854 (1096)
T KOG1897|consen 783 T---DD-PNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVE--FNGKLLAGI-NQSVRLYE 854 (1096)
T ss_pred c---CC-CceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhh--hCCeEEEec-CcEEEEEE
Confidence 6 22 36899999999998 7789999999999999 899999999999999999999 999999998 57899999
Q ss_pred hhhheeeee
Q 001003 1180 FSFLRSLFI 1188 (1192)
Q Consensus 1180 ~~~~~~~~~ 1188 (1192)
|--.|+|-+
T Consensus 855 ~t~~~eLr~ 863 (1096)
T KOG1897|consen 855 WTTERELRI 863 (1096)
T ss_pred ccccceehh
Confidence 999998865
No 3
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=5.9e-95 Score=859.59 Aligned_cols=890 Identities=20% Similarity=0.309 Sum_probs=703.7
Q ss_pred chhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCcccc
Q 001003 3 FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESK 82 (1192)
Q Consensus 3 ~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~~~ 82 (1192)
|.|..+++.+|+|.||++|+|.+++.+ ++++++++.|++|++.++ +|
T Consensus 2 ~lysltlq~~t~i~~~~~g~fs~~k~q---------------------------eIv~~~~s~l~L~~~d~~-~G----- 48 (1205)
T KOG1898|consen 2 FLYSLTLQNQTGIVQAIYGNFSGPKAQ---------------------------EIVLGRGSILELYRIDEN-DG----- 48 (1205)
T ss_pred chhhhhhhcccceeeeehhhccCCchh---------------------------eEEEEeeeEEEEEEecCC-Cc-----
Confidence 678899999999999999999999876 999999999999998632 35
Q ss_pred CCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeeeee
Q 001003 83 NSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCF 162 (1192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh~~ 162 (1192)
||++++++.+||+|++++.+|+.+. .+|+|+|++|+++++|++|+.+++.+++ +|+
T Consensus 49 -----------------~l~~i~~~~vFg~Irsla~~~lt~~----~kD~LaV~SDSGri~il~y~~ek~~~~~--~~q- 104 (1205)
T KOG1898|consen 49 -----------------RLKTICRQEVFGTIRSLAAFRLTGG----TKDYLAVGSDSGRISILEYNNEKNHFEK--LHQ- 104 (1205)
T ss_pred -----------------eEEEEEEEeehhhhhhhhccccCCC----CccEEEEEcCCceEEEEEechhhhcccc--ccc-
Confidence 4999999999999999999999986 8999999999999999999999988865 888
Q ss_pred eccccccccCCcccccCCCeEEECCCCcEEEEE-EcCceEEEEeCccCCCCCCCC-CCCCCCCCCccceeeceEEEEccc
Q 001003 163 ESPEWLHLKRGRESFARGPLVKVDPQGRCGGVL-VYGLQMIILKASQGGSGLVGD-EDTFGSGGGFSARIESSHVINLRD 240 (1192)
Q Consensus 163 E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~-~y~~~L~ilP~~~~~~~l~~~-~~~~~~~~~~~~~~~~s~~i~l~~ 240 (1192)
|+ ++|+|+|+..||+|+.+||.|||+++. +|+++|+++ +++| ....++++|+++++.++.++++..
T Consensus 105 et----fGks~~rrivpG~y~~idp~Gra~misave~~kLvyv--------lnrD~~a~ltisSpleahk~~sic~~l~~ 172 (1205)
T KOG1898|consen 105 ET----FGKSGCRRIVPGQYLAIDPKGRAVMISAVEKQKLVYV--------LNRDGAARLTISSPLEAHKAHSICLDLVG 172 (1205)
T ss_pred cc----cCcccceEeccccEEEEcCCccceeeehhhcCcEEEE--------EccchhhhceecCchhhccCCcEEEEEEE
Confidence 66 699999999999999999999999998 999999998 3222 236678999999999999999999
Q ss_pred cCccceeeeeeccCCcccEEEEEEec----CCCcccceeeeeeeeEEEEEEEeeccceeeeeeeeccCCcccceeEEecC
Q 001003 241 LDMKHVKDFIFVHGYIEPVMVILHER----ELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPS 316 (1192)
Q Consensus 241 ldi~~V~D~~FL~gy~~PtlaiL~e~----~~tw~gr~~~~~dt~~l~~~sLdl~~k~~~~i~s~~~Lp~d~~~LipvP~ 316 (1192)
+|. ||.||+||.|+-+ ....+|... ..+-..+++|.||+..++..+.|+. -+...++++++||+
T Consensus 173 Vd~----------gf~np~fa~LE~dy~~a~~d~tgeaa-~~~~~~l~fYeldlglnhvvrk~s~-p~~~~~n~l~~VP~ 240 (1205)
T KOG1898|consen 173 VDV----------GFENPIFAALERDYSEADNDPTGEAA-TMTQKVLTFYELDLGLNHVVRKASE-PVNHFGNFLLTVPG 240 (1205)
T ss_pred Eec----------cCCCceEEEEeechhhcccCchhhhh-hccccceeEEEEecccceeEEEccc-ccCCCceEEEEecC
Confidence 998 9999999999954 222334332 2233456799999999999999987 47788999999998
Q ss_pred C---CCeEEEEecceEEEEeCC-CceeEeccccccccCCCccCcCC--------CceeEeeceeeEEeeCcEEEEEcCCC
Q 001003 317 P---IGGVLVVGANTIHYHSQS-ASCALALNNYAVSLDSSQELPRS--------SFSVELDAAHATWLQNDVALLSTKTG 384 (1192)
Q Consensus 317 p---~GGvLVig~n~I~y~d~~-~~~~~a~N~~~~~~~~~~~~~~~--------~~~l~l~~~~~~~~~~~~~Ll~~~~G 384 (1192)
. ..|||||+.|++.|++.. .+. .+.+++++ ...+...++.+.-++.+++|+|+++|
T Consensus 241 G~D~ps~v~vc~~n~~~y~~~~d~p~------------~ri~~~rr~~~L~~~~~~vliv~s~~hk~k~~ff~llqt~~G 308 (1205)
T KOG1898|consen 241 GSDGPSGVLVCAENYLLYRNLGDHPD------------VRIPIERRINELSDAEDGVLIVSSAEHKTKSMFFFLLQTEYG 308 (1205)
T ss_pred CCCCCcceEEecCceeeccccccCCC------------EEeccccccccCCccccccEEEEeecccccCCeEEEEEecCC
Confidence 6 359999999999999986 321 22233332 22344544444456778999999999
Q ss_pred CEEEEEEEECCceEeeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEeeCCCcccccCCCccccCCcccCCccc
Q 001003 385 DLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPST 464 (1192)
Q Consensus 385 ~L~~l~l~~dg~~V~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1192)
|+|+++|..|+..|..+++.|+++.|.+..||++++|+||+.|++||+.|||+.+.+ +++++.
T Consensus 309 D~fk~tl~~d~d~v~el~lkYfDtvp~a~~L~I~k~GfLf~~sE~~n~~lyq~~~LG----------~~~~~~------- 371 (1205)
T KOG1898|consen 309 DLFKLTLEHDGDNVVELRLKYFDTVPCALQLCILKTGFLFVASEFGNHRLYQFEKLG----------EEDDDF------- 371 (1205)
T ss_pred ceEEEEEecCCCcceeeeeehhcCCccceEEEEeccceEEEhhhccCcceeehhhcC----------CCccch-------
Confidence 999999999999999999999999999999999999999999999999999999864 333221
Q ss_pred hhccCCCcchhhcccCccccccccCCCCCccccccceeEEEEeeecccCCccccccccccCCCC----CccCCCCCCceE
Q 001003 465 KRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYE 540 (1192)
Q Consensus 465 k~~~~~~~~~~d~~~~~~e~~ly~~~~~~~~~~~~~~~~~v~Dsl~NigPI~D~~vg~~~~~~~----~~sG~g~~gsL~ 540 (1192)
++.++.. +.+...|+++ ...+|..+++++||.|+.|+.+++..+++. .|||.+.+++||
T Consensus 372 -------s~~~~~~--~~~~~~f~p~--------~l~nL~~~~~i~sl~p~~d~~I~~~~ne~~~qi~~~cg~~~~sslr 434 (1205)
T KOG1898|consen 372 -------SNAMTSE--EGKSVFFEPR--------ILKNLSPVSSVESLSPLLDISIGDDSNEDTPQIYSACGRGPRSSLR 434 (1205)
T ss_pred -------hhhcccc--cCcceecccc--------ccccccchhhhhccCccceeEeeccCcccchhhhhhhCcCccccch
Confidence 1111111 0122344443 245788999999999999999998766554 399999999998
Q ss_pred E------------EeCCC-cCEEEEEEecCCCCCCCCcccccccCCCcceEEEEEeccceEEEEecCceeeeecccCccc
Q 001003 541 L------------VELPG-CKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFV 607 (1192)
Q Consensus 541 i------------~eLpg-~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~ 607 (1192)
+ .+||| ++++||++.+ ..+.||+|||+||.++|+||++|+.+||+++ .||..
T Consensus 435 ~lR~gle~sel~~t~lp~~~ta~WTvk~~--------------~td~ydsyivvsF~n~TlVLsIgesveEvtd-sgFls 499 (1205)
T KOG1898|consen 435 ILRNGLEVSELLVTELPGNPTATWTVKKN--------------ITDVYDSYIVVSFVNGTLVLSIGESVEEVTD-SGFLS 499 (1205)
T ss_pred hhccccchHHHhhhccCCCCceEEEEcCc--------------cccccceEEEEEeeccEEEEEcchhHHHhhh-ccccc
Confidence 8 25887 9999999875 5789999999999999999999999999985 69999
Q ss_pred cCCcEEEEeeCCCCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecC
Q 001003 608 QGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDP 687 (1192)
Q Consensus 608 ~~~TI~ag~l~~~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~ 687 (1192)
+.+||+|+.| |+..+|||++.+||++..+.++. +|..| ++.+|+.++++..+|+|++++|.+++|.++.
T Consensus 500 ~~~Tl~~~l~-Gd~slVQi~~d~iRhi~~~~r~~---------ew~~P-~~~~Iv~~avnr~qiVvalSngelvyfe~d~ 568 (1205)
T KOG1898|consen 500 TTPTLACSLM-GDDSLVQIHPDGIRHIRPTKRIN---------EWKTP-ERVRIVKCAVNRRQIVVALSNGELVYFEGDV 568 (1205)
T ss_pred CCceEEEEEe-cCCcEEEEchhhhhhcccccccc---------cccCC-CceEEEEEeecceEEEEEccCCeEEEEEecc
Confidence 9999999999 67889999999999998776432 78887 8899999999999999999999999999997
Q ss_pred CCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEE
Q 001003 688 STCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFD 767 (1192)
Q Consensus 688 ~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~s 767 (1192)
.+.+.+......+ +..++|+++..+.- +.+ -+-+|+++..++.++|++
T Consensus 569 sgql~E~~er~tl---~~~vac~ai~~~~~----------------------------g~k-rsrfla~a~~d~~vriis 616 (1205)
T KOG1898|consen 569 SGQLNEFTERVTL---STDVACLAIGQDPE----------------------------GEK-RSRFLALASVDNMVRIIS 616 (1205)
T ss_pred Cccceeeeeeeee---ceeehhhccCCCCc----------------------------chh-hcceeeeeccccceeEEE
Confidence 7665665444444 44567665543220 111 234899999999999999
Q ss_pred CCCcee--eEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeecCCCCC----ccEE
Q 001003 768 VPNFNC--VFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHS----RPFL 841 (1192)
Q Consensus 768 LP~~~~--v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~g~~~~----~p~L 841 (1192)
|-.-.. .++...++ ..+..++++.++.... .-||
T Consensus 617 L~p~d~l~~ls~q~l~----------------------------------------~~~~s~~iv~~~~~~~~~~~~L~l 656 (1205)
T KOG1898|consen 617 LDPSDCLQPLSVQGLS----------------------------------------SPPESLCIVEMEATGGTDVAQLYL 656 (1205)
T ss_pred ecCcceEEEccccccC----------------------------------------CCccceEEEEecccCCccceeEEE
Confidence 864222 22222211 1233456666654443 7899
Q ss_pred EEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCCCCCCCccceEEee-cc
Q 001003 842 FAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NI 920 (1192)
Q Consensus 842 lv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~~~~~g~~~l~~f~-~i 920 (1192)
.++|.||-++.+.+..-.+ +..+.|+ || +|.+|++.|+ ..
T Consensus 657 ~~GL~NGvllR~~id~v~G--------------------~l~d~rt---R~----------------lG~~pvkLf~~~~ 697 (1205)
T KOG1898|consen 657 LIGLRNGVLLRFVIDTVTG--------------------QLLDIRT---RF----------------LGLRPVKLFPISM 697 (1205)
T ss_pred EecccccEEEEEEeccccc--------------------ceeeehe---ee----------------eccccceEEEEee
Confidence 9999999999887753221 1245555 66 4899999998 77
Q ss_pred CCceEEEEcCCCCeEEEEe-CCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEe
Q 001003 921 SGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVI 999 (1192)
Q Consensus 921 ~G~~gVF~~G~rP~wi~~~-~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~i 999 (1192)
.|.+.|++.++|| |+.++ +.++.+.|+ ++.+...++||.+..||.|.+++..+ .|||.++....+ .++++. +
T Consensus 698 ~~~s~vL~lSsr~-wl~y~~~~~~h~t~I-sy~~l~~as~~~S~qcpeGiv~i~~n-~l~i~~~~~~g~---~~n~~~-~ 770 (1205)
T KOG1898|consen 698 RGQSDVLALSSRP-WLLYTYQQEFHLTPI-SYSTLEHASPFCSEQCPEGIVAISKN-TLRIIALDKLGK---VLNVDG-F 770 (1205)
T ss_pred cCcceeEEecCCh-hhhhhhcceeeeecc-cccchhccccccccCCCcchhhhhhh-hhheeeehhhcc---cccccc-c
Confidence 8899999999999 99875 889999998 77899999999999999998888777 999999998863 579999 9
Q ss_pred cCCCccCeEEEecCCCEEEEEEeecCccc-----cccccccc---cccccccccccC-------CCCccccccCcc---e
Q 001003 1000 PLKATPHQITYFAEKNLYPLIVSVPVLKP-----LNQVLSLL---IDQEVGHQIDNH-------NLSSVDLHRTYT---V 1061 (1192)
Q Consensus 1000 pL~~tp~~Iay~~~~~~y~v~~s~~~~~~-----~~~~~~~~---~~ee~~~~~~~~-------~~~~~~~~~~p~---~ 1061 (1192)
|+++|||+++|||+++..+++++.....- .++..... ..+++..|.+.+ +...+.....|. .
T Consensus 771 ~l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~ 850 (1205)
T KOG1898|consen 771 PLAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNG 850 (1205)
T ss_pred ccccCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccccCcccccC
Confidence 99999999999999999999988642110 01000000 011222222211 011111122221 3
Q ss_pred eeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcc--cccCceEEEEEeeeCC
Q 001003 1062 EEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGED--VAARGRVLLFSTGRNA 1139 (1192)
Q Consensus 1062 ~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd--~~~rGRIlvfev~~~~ 1139 (1192)
..++|+.+|+. +-.+++.+++.+||.++|++.+.+++ ++...|++||++...-+| .-++|++|.|+++.+.
T Consensus 851 w~s~I~~~d~~----s~~~~~~~~l~~ne~a~~v~~~~fs~---~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g 923 (1205)
T KOG1898|consen 851 WVSSIRVFDPK----SGKIICLVELGQNEAAFSVCAVDFSS---SEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG 923 (1205)
T ss_pred ccceEEEEcCC----CCceEEEEeecCCcchhheeeeeecc---CCCceEEEEEeeccccccccccCCCceEEEEEEecC
Confidence 77899999997 55889999999999999999999983 334489999999988766 2389999999999999
Q ss_pred CCCceeEeecccCcccccchhcccCceEEEeec
Q 001003 1140 DNPQNLVLSGSYGPLFSSVQIDFASHFFAICSN 1172 (1192)
Q Consensus 1140 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 1172 (1192)
+++|.+|.+..-+.+.++.+ |+|.+||.-+.
T Consensus 924 ~~lellh~T~~~~~v~Ai~~--f~~~~LagvG~ 954 (1205)
T KOG1898|consen 924 DKLELLHKTEIPGPVGAICP--FQGRVLAGVGR 954 (1205)
T ss_pred ceeeeeeccCCCccceEEec--cCCEEEEeccc
Confidence 99999998888888888887 88887776553
No 4
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=9e-94 Score=827.32 Aligned_cols=974 Identities=17% Similarity=0.215 Sum_probs=716.3
Q ss_pred CcchhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCcc
Q 001003 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1192)
Q Consensus 1 m~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~ 80 (1192)
|+ -+|.+....|.++||+.|+||+.+.. ||+|.|+|.|+||+...| +
T Consensus 1 m~-~~y~d~~d~tv~~~~~ag~Ft~s~~~---------------------------~llv~~~Nil~v~~~~~d--~--- 47 (1319)
T COG5161 1 MN-YLYSDESDWTVTEGCSAGLFTPSRTC---------------------------SLLVYNGNILAVRLWKYD--S--- 47 (1319)
T ss_pred Cc-chhhhhhHHHHhhccccceeeccccc---------------------------eEEEEeccEEEEEEeecc--C---
Confidence 54 46788999999999999999998876 999999999999998744 4
Q ss_pred ccCCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeee
Q 001003 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh 160 (1192)
+|.++-++.++|.|++|...+...+ .+|.|++.|..||+++++||.+.+.|.|+|+|
T Consensus 48 -------------------~l~l~de~~~~e~~t~I~~~pq~~s----e~~~lll~t~~akis~lrf~sq~n~f~Tislh 104 (1319)
T COG5161 48 -------------------GLVLVDEHMLLEKVTQIEKYPQISS----EQDGLLLLTHRAKISLLRFDSQANEFRTISLH 104 (1319)
T ss_pred -------------------CeeEchHHhhhhhhhhhhhcccccC----ccceEEEEeccceEEEEEehhhcccceeEEEe
Confidence 2999999999999999999977765 79999999999999999999999999999999
Q ss_pred eeeccccccccCCcc--cccCCCeEEECCCCcEEEEEEcCceEEEEeCccCCCC--CCCCCCCCC---------CCCC--
Q 001003 161 CFESPEWLHLKRGRE--SFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSG--LVGDEDTFG---------SGGG-- 225 (1192)
Q Consensus 161 ~~E~~~~~~~~~G~~--~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~~~--l~~~~~~~~---------~~~~-- 225 (1192)
|||.. . .|.. .......+.-||++-|+ |++|++..+.+||+-...+ +.+.|.+.. ...|
T Consensus 105 yyeGK----f-kgksLvelak~stle~D~~ssca-LlfneDi~~flpfhvnkndddev~~d~D~~~~~~~~~h~~i~psq 178 (1319)
T COG5161 105 YYEGK----F-KGKSLVELAKFSTLEFDIRSSCA-LLFNEDIGNFLPFHVNKNDDDEVRIDVDLGMFQMSKRHFSIFPSQ 178 (1319)
T ss_pred eeccc----c-CCchhhhhhhhhheeeccCccch-hhhhhhhhhcccccccCCccccccccccccHHHHHHHHhhcCCCC
Confidence 99974 1 1222 12345678999999887 6788999999999754322 211111100 0000
Q ss_pred -------------ccceeeceEEEEccccC--ccceeeeeeccCCcccEEEEEEecCCCcccceeeeeeeeEEEEEEEee
Q 001003 226 -------------FSARIESSHVINLRDLD--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSIST 290 (1192)
Q Consensus 226 -------------~~~~~~~s~~i~l~~ld--i~~V~D~~FL~gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l~~~sLdl 290 (1192)
...-..||+++...+|| |+||+|++||.||.+||+|+||+|.++|++....+|+++.+.+++||+
T Consensus 179 gtntfnkrkrt~~~~kfsaPs~Vl~~seld~~ikniiD~~FL~ny~~PTvallY~Pkl~~~~~~ti~k~p~~~~v~Tldl 258 (1319)
T COG5161 179 GTNTFNKRKRTLFPGKFSAPSKVLKFSELDGKIKNIIDFVFLENYSIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDL 258 (1319)
T ss_pred CccccchhhhhhcCCcccCceeEEEehhhhccccccEEEEeeccCCCceEEEEecccccccceeEeecCceeEEEEEEec
Confidence 01123589999999998 999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeeeccCCcccceeEEecCCCCeEEEEecceEEEEeCCC-ceeEeccccccccCCCc-cCcCC--CceeEeec
Q 001003 291 TLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQ-ELPRS--SFSVELDA 366 (1192)
Q Consensus 291 ~~k~~~~i~s~~~Lp~d~~~LipvP~p~GGvLVig~n~I~y~d~~~-~~~~a~N~~~~~~~~~~-~~~~~--~~~l~l~~ 366 (1192)
+++.+.+|-.+..||+|.+..+|+|. |.|++|.|+++|+|..+ .+++.+|+++.+...+. ..+++ ++++...|
T Consensus 259 ~~~~saVI~~~~~lP~d~~~~v~~p~---Gall~g~neli~idstg~~~~I~lNs~~~k~~~~~~v~d~s~~d~n~~~~g 335 (1319)
T COG5161 259 GAGRSAVIDEFLVLPRDFRVTVAGPV---GALLFGSNELILIDSTGSSYTIPLNSMSEKYGGNKIVEDISLSDVNCFSRG 335 (1319)
T ss_pred CcchhhhhHhHhcCCceEEEEEeccc---ceEEEecccEEEEecCCcEEEeechhhHHHhcCCceEeecccceeeEeecC
Confidence 99999999888889999999999984 99999999999999988 67999999997765555 44555 56777888
Q ss_pred eeeEEeeC-----cEEEEEcCCCCEEEEEEEECCceEeeEEEEec-------CCCccccceEEecCCeEEEEeeeCCeEE
Q 001003 367 AHATWLQN-----DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-------NPSVLTSDITTIGNSLFFLGSRLGDSLL 434 (1192)
Q Consensus 367 ~~~~~~~~-----~~~Ll~~~~G~L~~l~l~~dg~~V~~l~l~~~-------~~~~~~s~l~~l~~g~lFvGS~~GDS~L 434 (1192)
...-|+.. .++++++-+|+.|.|.+.+||+++.++.|..+ ...+-++|+..+++..+|+|+..+||.+
T Consensus 336 ttsIwipsSK~~~etl~l~dl~g~~yyl~~~~dgk~iigfdi~~L~~e~dllk~~s~~~Cv~~~n~~l~f~g~g~~ns~v 415 (1319)
T COG5161 336 TTSIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCVGHVNNLLFFGGVGDSNSRV 415 (1319)
T ss_pred ceeeeccCcccccceEEEEecCCCEEEEEEEeccceeeccceeeeeeeccccccCCCCeeEEEcCceEEEEEecCCceEE
Confidence 88888754 46899999999999999999999998777654 3577899999999999999999999999
Q ss_pred EEEeeCCCcccccCCCccccCCcccCCccchhccCCCcchhhcccCccccccccCCCCCccccccceeEEEEeeecccCC
Q 001003 435 VQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGP 514 (1192)
Q Consensus 435 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~d~~~~~~e~~ly~~~~~~~~~~~~~~~~~v~Dsl~NigP 514 (1192)
+||.+.........+.|.+. ..+ -.+++|||.++--|..+++........+..++.+++|+.+.|+||
T Consensus 416 lr~~~l~~tiEtR~~eG~~~--l~g----------~nDeEmdD~y~apEn~l~~n~~~~v~~~~~p~d~el~~~l~n~gp 483 (1319)
T COG5161 416 LRIKSLLPTIETRASEGVGP--LEG----------GNDEEMDDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGP 483 (1319)
T ss_pred EEecccCCchhhhhhcCCCc--ccC----------CChhhhhhhhcccccccccCcccceeeccCcchhHHhhhhccCCc
Confidence 99998753221100000000 000 001223333332222333332222222335678999999999999
Q ss_pred ccccccccccCC---CC---------CccCCCCCCceEE------------EeCCCcCEEEEEEecCCCCCCCCcccccc
Q 001003 515 LKDFSYGLRINA---DA---------SATGISKQSNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAA 570 (1192)
Q Consensus 515 I~D~~vg~~~~~---~~---------~~sG~g~~gsL~i------------~eLpg~~~iWtv~~~~~~~~~~~~~~~~~ 570 (1192)
|.||+||+.... +. ...|++..+.|.+ ..+-++..+|+++.++..
T Consensus 484 itdfavgkv~v~kglP~pN~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~e~vw~~kI~g~l----------- 552 (1319)
T COG5161 484 ITDFAVGKVDVEKGLPIPNIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQKIRGYL----------- 552 (1319)
T ss_pred ccceeeeeccceecCCCCCccceeeEEeccCCCcceEEEEeccccceeeehccccchhheeehhcccee-----------
Confidence 999999986532 11 1467777788877 234578999999986421
Q ss_pred cCCCcceEEEEEeccceEEEEecCceeeeecccCccccCCcEEEEeeCCCCEEEEEecCcEEEEeCCc-ceeeeecCCCC
Q 001003 571 YDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSY-MTQDLSFGPSN 649 (1192)
Q Consensus 571 ~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~~-~~q~i~~~~~~ 649 (1192)
....--.|+++|..+.|.||+-++++.+.. +..|..+..|+.++.++.++++|||||+.+++||.+. +.+.+.+.
T Consensus 553 r~~~~~~~~~ls~~s~S~If~~~e~f~l~~-~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~lR~l~~~~F~--- 628 (1319)
T COG5161 553 RCSRALDFYILSRVSDSRIFRWSEEFLLEV-SGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDLRMLGRVEFA--- 628 (1319)
T ss_pred hhcceeeEEEeecccccceeeccccceeee-cceeeccccEEEeeeccCcceEEEecchHhhhhcccceeeeeEeec---
Confidence 112234799999999999999999998874 5689999999999999889999999999999999885 45545442
Q ss_pred CCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCce-EeeccccccccCCCceeEEEeeccCCCCCcccccccc
Q 001003 650 SESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT-VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTD 728 (1192)
Q Consensus 650 ~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~-l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~ 728 (1192)
..-|++.|++||++++....|.|.+|..+..+.+ +++..+..+. +-...+.-+. |....
T Consensus 629 --------~~~V~~~Sv~Dp~ilvv~~~g~i~~f~~~ekn~rL~k~dl~~~l~--d~k~~s~v~~-dsN~~--------- 688 (1319)
T COG5161 629 --------SRAVEARSVRDPLILVVRDSGKILTFYDREKNMRLFKIDLVTCLA--DAKNKSFVLS-DSNSL--------- 688 (1319)
T ss_pred --------eeeeEEEeccCCEEEEEEecCceEEEEehhhhchhccCChHHHHH--hhhhheEecc-Ccccc---------
Confidence 1249999999999999999999999998876655 3433332231 1112221111 11100
Q ss_pred cccccCccccccCCCCCCCCCCcEEEEEE-ecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCC
Q 001003 729 AWLSTGVGEAIDGADGGPLDQGDIYSVVC-YESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSS 807 (1192)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~ 807 (1192)
|.+ .++... +. .-..++.. ..+..+--..-|.+..++.+++.+.+.+...- . +.
T Consensus 689 -----g~f-~ig~~~---Sq-~e~~l~~~~~~~~q~~~~~s~~~D~~~e~dg~dQlte~~~~----~-----ty------ 743 (1319)
T COG5161 689 -----GIF-DIGKRI---SQ-LEPCLVKGLPYAIQFSPEASPAMDLAGEEDGDDQLTEISMS----L-----TY------ 743 (1319)
T ss_pred -----cce-ecccch---hh-hchhhhhcCcccceeccccCcchhhccccccchhhhhHHHH----H-----HH------
Confidence 000 000000 00 00112221 12223322334446666666544332221100 0 00
Q ss_pred ccCCCCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCcccccccccccccccc
Q 001003 808 EEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRL 887 (1192)
Q Consensus 808 ~~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (1192)
.-++ +--..|.|.++++..+|.+-+.|||+.....++++.|+.+++..
T Consensus 744 -nl~d----~~f~lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~yk~~l~r~--------------------------- 791 (1319)
T COG5161 744 -NLID----MLFRLPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVFYKTHLPRH--------------------------- 791 (1319)
T ss_pred -hhhh----hhccChhhhhhhhHhhcccccchheehhhcCceEEEEeeccccc---------------------------
Confidence 0000 01124678899999999999999999999999999999985221
Q ss_pred ceeeEEec-C--CCccCC-----CCCCCCCCccceEEeeccCCceEEEEcCCCCeEEEEe-CCceEEEecCCCCceeEEe
Q 001003 888 RNLRFSRT-P--LDAYTR-----EETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFT 958 (1192)
Q Consensus 888 ~~lrF~kv-~--~~~~~~-----~~~~~~~g~~~l~~f~~i~G~~gVF~~G~rP~wi~~~-~g~l~~~p~~~~~~v~~~t 958 (1192)
.+|.|- . ..+... +.+..+.-.+-...|....||+.+|++|..|..+.+. ....++.+. +.-|+.+.+
T Consensus 792 --~~f~~nvTRndlAitGaPdna~~Ka~sSV~ri~m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~-gNIPlvsv~ 868 (1319)
T COG5161 792 --VSFNLNVTRNDLAITGAPDNADIKAFSSVGRIDMVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHR-GNIPLVSVI 868 (1319)
T ss_pred --chhhhhcchhhhhccCCCcchhhhhcccccceeEEEeeccCeEEEEEcCCccEEEEEeccCCcceeec-CCCceeeee
Confidence 123221 0 000000 0111111112234777778899999999999777663 344444454 347999999
Q ss_pred cccCCCCCCcEEEEEecCeEEEEEcCCCCccC-CccceEEEecCCCccCeEEEecCCCEEEEEEeecCcccccccccccc
Q 001003 959 VLHNVNCNHGFIYVTSQGILKICQLPSGSTYD-NYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLI 1037 (1192)
Q Consensus 959 ~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d-~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~ 1037 (1192)
|||- .|.+|++.....|+|++-...-|+ +.||+++ +|++.|..+++||+..++|+|....+ .++. ..
T Consensus 869 p~s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~-~~~~Ktlqklvyh~~~~~~~Vgsc~~--~~f~-----~~ 936 (1319)
T COG5161 869 PLSK----RGYLMVDNVLGVRASQYVFDNGYVGNKNPVKR-TPKHKTLQKLVYHCAGRYMVVGSCEE--AGFS-----PK 936 (1319)
T ss_pred eccc----ccEEEEecccceeEEEEEeccceecccCceee-ccccccccceeeeccceEEEEEeeee--cCcc-----cc
Confidence 9986 899999999999999999998887 9999999 99999999999999999999976543 3331 23
Q ss_pred ccccccccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEec-cccCCCCceEEEEEe
Q 001003 1038 DQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLF-NTTTKENETLLAIGT 1116 (1192)
Q Consensus 1038 ~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~-s~~t~~~~~ylaVGT 1116 (1192)
+||+++.+.- ++-...|+..+++|-|++|. +|++||+|||++||.|++|+.+.|+ +++|+.+++||+|||
T Consensus 937 gEdgE~~i~~-----D~Nvphaeg~~~~vdL~spk----sw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgt 1007 (1319)
T COG5161 937 GEDGESGIPV-----DTNVPHAEGYRFYVDLYSPK----SWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGT 1007 (1319)
T ss_pred CCCCCccCcc-----CCCCcccccceeeEEEecCc----ceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEe
Confidence 5554333221 12235567889999999996 9999999999999999999999999 788899999999999
Q ss_pred ccccCcccccCceEEEEEeee---CCCCCceeEeecccCcccccchhcccCceEEEeecc
Q 001003 1117 AYVQGEDVAARGRVLLFSTGR---NADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS 1173 (1192)
Q Consensus 1117 a~~~gEd~~~rGRIlvfev~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1173 (1192)
++..|||.|.|||.+|||||+ +|++|+|.+ |+|-+.. |+.||-+...|-++
T Consensus 1008 t~~~gED~p~rG~~hv~eII~VVP~pg~P~t~~---KLK~~~~---Ee~kGTV~~vcEV~ 1061 (1319)
T COG5161 1008 TFIEGEDRPARGRLHVLEIISVVPSPGSPFTDC---KLKVLGI---EETKGTVVRVCEVR 1061 (1319)
T ss_pred eecccCccCCcCceEEEEEEEecCCCCCCcccc---eeeEEeh---hhcccEEEEEEEEc
Confidence 999999999999999999985 999999999 8888877 99999998888776
No 5
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=7.3e-55 Score=532.32 Aligned_cols=451 Identities=29% Similarity=0.443 Sum_probs=300.1
Q ss_pred cEEEEEeCCCeEEEEEEeCCCCCEEEEeeeeeeccccccccCCcccccCCCeEEECCCCcEEEEEEcCceEEEEeCccCC
Q 001003 131 DSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGG 210 (1192)
Q Consensus 131 D~Llv~~~~aklsil~~d~~~~~l~t~Slh~~E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~ 210 (1192)
|+|+|+|+++++++|+||++++++.+.++|+++. +.+.|.|+..+|++++|||.|||+|+.+|++.+.|+|+.+..
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~----~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~ 76 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEP----LSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSL 76 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE-------SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS--
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEe----cCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccc
Confidence 8999999999999999999999886557787755 478999999999999999999999999999999999998711
Q ss_pred CCCCCCCCCCCCCCCccceeeceEEEEc-cccCccceeeeeecc---CCcccEEEEEEecCCCcccceeeeeeeeEE--E
Q 001003 211 SGLVGDEDTFGSGGGFSARIESSHVINL-RDLDMKHVKDFIFVH---GYIEPVMVILHERELTWAGRVSWKHHTCMI--S 284 (1192)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~s~~i~l-~~ldi~~V~D~~FL~---gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l--~ 284 (1192)
+.+. . ....+..++ ++ .+|+||+||| ||++||||+||++.+.|.. ..++- .
T Consensus 77 ---~~~~---~--------~~~~~~~pi~s~---~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~------~~~y~w~~ 133 (504)
T PF10433_consen 77 ---DSDI---A--------FSPHINSPIKSE---GNILDMCFLHPSVGYDNPTLAILYVDSQRRTH------LVTYEWSL 133 (504)
T ss_dssp -----T----T--------T---EEEE--S----SEEEEEEEES---S-SS-EEEEEEEETT-EEE------EEEEE---
T ss_pred ---cccc---c--------ccccccccccCC---ceEEEEEEEecccCCCCceEEEEEEEecccce------eEEEeeec
Confidence 0000 0 112222223 23 3999999999 9999999999999664221 11110 1
Q ss_pred EEEEeeccceee-e--eeeeccCCcccceeEEecCCCCeEEEEecceEEEEeCCCce----eEeccccccccCCCccCcC
Q 001003 285 ALSISTTLKQHP-L--IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASC----ALALNNYAVSLDSSQELPR 357 (1192)
Q Consensus 285 ~~sLdl~~k~~~-~--i~s~~~Lp~d~~~LipvP~p~GGvLVig~n~I~y~d~~~~~----~~a~N~~~~~~~~~~~~~~ 357 (1192)
...++...+..+ . +|....+| ++|||||.|.||+||++++.|+|.++.... ...++.. ...+
T Consensus 134 ~~~l~~~~~~~~~~~~l~~~~~~p---~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~--------~~~~ 202 (504)
T PF10433_consen 134 DDGLNHVISKSTLPIRLPNEDELP---SFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSP--------PSSS 202 (504)
T ss_dssp -----EETTTTEEEE--EEEE-TT---EEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H---------HHH
T ss_pred ccccceeeeeccccccccccCCCc---cEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCC--------ccCC
Confidence 222333333222 2 66666677 999999999999999999999999764321 1111100 0001
Q ss_pred CCceeEeece---eeEEeeCcEEEEEcCCCCEEEEEEEECCceEeeEEEEecCC-CccccceEEecCC--eEEEEeeeCC
Q 001003 358 SSFSVELDAA---HATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNP-SVLTSDITTIGNS--LFFLGSRLGD 431 (1192)
Q Consensus 358 ~~~~l~l~~~---~~~~~~~~~~Ll~~~~G~L~~l~l~~dg~~V~~l~l~~~~~-~~~~s~l~~l~~g--~lFvGS~~GD 431 (1192)
..+....... .....+.+++||++++|+||+|.+..+++ +++++++|+ ++++++++++++| +||+||++||
T Consensus 203 ~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~---~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gd 279 (504)
T PF10433_consen 203 SSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG---SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGD 279 (504)
T ss_dssp TS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE---EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-
T ss_pred CceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC---eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCC
Confidence 1111110000 00124567999999999999999999877 799999999 9999999999999 9999999999
Q ss_pred eEEEEEeeCCCcccccCCCccccCCcccCCccchhccCCCcchhhcccCccccccccCCCCCccccccceeEEEEeeecc
Q 001003 432 SLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVN 511 (1192)
Q Consensus 432 S~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~d~~~~~~e~~ly~~~~~~~~~~~~~~~~~v~Dsl~N 511 (1192)
|+|+|+.. ..++++|+++|
T Consensus 280 s~l~~~~~-------------------------------------------------------------~~l~~~~~~~N 298 (504)
T PF10433_consen 280 SQLLQISL-------------------------------------------------------------SNLEVLDSLPN 298 (504)
T ss_dssp EEEEEEES-------------------------------------------------------------ESEEEEEEE--
T ss_pred cEEEEEeC-------------------------------------------------------------CCcEEEEeccC
Confidence 99999963 24889999999
Q ss_pred cCCccccccccccCC--C--------CCccCCCCCCceEE--------------EeCCCcCEEEEEEecCCCCCCCCccc
Q 001003 512 IGPLKDFSYGLRINA--D--------ASATGISKQSNYEL--------------VELPGCKGIWTVYHKSSRGHNADSSR 567 (1192)
Q Consensus 512 igPI~D~~vg~~~~~--~--------~~~sG~g~~gsL~i--------------~eLpg~~~iWtv~~~~~~~~~~~~~~ 567 (1192)
+|||.||++++.... . .+|||.|++|+|++ .+|||+++||+++.+
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~----------- 367 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLS----------- 367 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SS-----------
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeec-----------
Confidence 999999999865322 1 15999999999988 368899999999864
Q ss_pred ccccCCCcceEEEEEeccceEEEEec-----CceeeeecccCccccCCcEEEEeeCCCCEEEEEecCcEEEEeCC--cce
Q 001003 568 MAAYDDEYHAYLIISLEARTMVLETA-----DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS--YMT 640 (1192)
Q Consensus 568 ~~~~~~~~~~yLvlS~~~~T~Vl~~g-----~~~eEv~~~~gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~--~~~ 640 (1192)
..+ |+|||+|+.++|+||+++ ++++|++.. ||.++++||+||++ ++++|||||+++||+++.. +..
T Consensus 368 ---~~~--~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~-~~~~ivQVt~~~i~l~~~~~~~~~ 440 (504)
T PF10433_consen 368 ---SSD--HSYLVLSFPNETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNV-GDGRIVQVTPKGIRLIDLEDGKLT 440 (504)
T ss_dssp ---SSS--BSEEEEEESSEEEEEEES----SSEEEEE----TS-SSS-EEEEEEE-TTTEEEEEESSEEEEEESSSTSEE
T ss_pred ---CCC--ceEEEEEcCCceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEc-CCCeEEEEecCeEEEEECCCCeEE
Confidence 122 899999999999999984 567777434 99999999999999 5899999999999999843 233
Q ss_pred eeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEe
Q 001003 641 QDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTL 712 (1192)
Q Consensus 641 q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l 712 (1192)
+ +|.+| .+..|++|+++++|++|++.++.+.+|+++......+......+. ...+|+|+.+
T Consensus 441 ~---------~w~~~-~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eis~l~i 501 (504)
T PF10433_consen 441 Q---------EWKPP-AGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILE-LDNEISCLSI 501 (504)
T ss_dssp E---------EEE-T-TS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE--SS-EEEEE-
T ss_pred E---------EEeCC-CCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeecccccc-CCCceEEEEe
Confidence 3 34444 677899999999999999999999999998765433332221111 2668888754
No 6
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=99.35 E-value=2.1e-12 Score=149.47 Aligned_cols=114 Identities=18% Similarity=0.380 Sum_probs=89.9
Q ss_pred eeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccC-ceEEEEEeeeCC--
Q 001003 1063 EYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNA-- 1139 (1192)
Q Consensus 1063 ~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~r-GRIlvfev~~~~-- 1139 (1192)
+|+|||+||. +|+++++|+|+++|+++|++.++|.+..+ +.++||||||++..+|+..++ |||++|++.+.+
T Consensus 1 ~s~i~l~d~~----~~~~~~~~~l~~~E~~~s~~~~~l~~~~~-~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 1 ASSIRLVDPT----TFEVLDSFELEPNEHVTSLCSVKLKGDST-GKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp --EEEEEETT----TSSEEEEEEEETTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred CcEEEEEeCC----CCeEEEEEECCCCceEEEEEEEEEcCccc-cccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 4789999995 99999999999999999999999984433 458999999999999999888 999999999863
Q ss_pred -CCCceeEeecccCcccccchhcccCceEEEeecceEEeeehhhhe
Q 001003 1140 -DNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLR 1184 (1192)
Q Consensus 1140 -~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 1184 (1192)
.+++.++.+...+++++..+ ++|. +++|.++++++|.|.--.
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~--~~~~-lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICS--FNGR-LVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEE--ETTE-EEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEEeecCcceEhhh--hCCE-EEEeecCEEEEEEccCcc
Confidence 37788887777777777665 8888 777778999999886444
No 7
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=0.76 Score=53.79 Aligned_cols=223 Identities=17% Similarity=0.269 Sum_probs=130.8
Q ss_pred CccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCCCCCCCccceEE
Q 001003 837 SRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITI 916 (1192)
Q Consensus 837 ~~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~~~~~g~~~l~~ 916 (1192)
.+|.|++.=-||.|-+|++. +. ..+++..++|.|.|. ... .
T Consensus 224 ~~plllvaG~d~~lrifqvD---Gk---------------------~N~~lqS~~l~~fPi------------~~a---~ 264 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVD---GK---------------------VNPKLQSIHLEKFPI------------QKA---E 264 (514)
T ss_pred CCceEEEecCCCcEEEEEec---Cc---------------------cChhheeeeeccCcc------------cee---e
Confidence 57877776679999999984 11 123455778877653 111 1
Q ss_pred eeccCCceEEEEcCCCCeEEEE---eCCceEEEecCCCCceeEEecccCCCCCCcEEEEEec-CeEEEEEcCCCCccCCc
Q 001003 917 FKNISGHQGFFLSGSRPCWCMV---FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQ-GILKICQLPSGSTYDNY 992 (1192)
Q Consensus 917 f~~i~G~~gVF~~G~rP~wi~~---~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~-~~LrI~~l~~~~~~d~~ 992 (1192)
| -.+|.+-||..|.|+++-.+ +..--.++|+... +=.+|-.|--..|.+ ||++... |.+.+...-...
T Consensus 265 f-~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e----- 336 (514)
T KOG2055|consen 265 F-APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE----- 336 (514)
T ss_pred e-cCCCceEEEecccceEEEEeeccccccccccCCCCc-ccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-----
Confidence 2 22787899999999944334 2444556676442 233455554444555 7777775 555555544433
Q ss_pred cceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcCC
Q 001003 993 WPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPD 1072 (1192)
Q Consensus 993 ~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~ 1072 (1192)
.+.. +.+..-.+-++++..++.+.+.+... + +. +.+-.
T Consensus 337 -li~s-~KieG~v~~~~fsSdsk~l~~~~~~G---------------e--------------------V~-----v~nl~ 374 (514)
T KOG2055|consen 337 -LITS-FKIEGVVSDFTFSSDSKELLASGGTG---------------E--------------------VY-----VWNLR 374 (514)
T ss_pred -hhhe-eeeccEEeeEEEecCCcEEEEEcCCc---------------e--------------------EE-----EEecC
Confidence 5666 77888889999998887777754321 0 01 11110
Q ss_pred CCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEeee----CCCCCceeEee
Q 001003 1073 RAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR----NADNPQNLVLS 1148 (1192)
Q Consensus 1073 ~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~----~~~~~e~~~~~ 1148 (1192)
.-..+.++.=+..=+.++++. .+ ...|+|+| +-+|-+=||+-.. .-.+|.+..
T Consensus 375 ----~~~~~~rf~D~G~v~gts~~~-S~-------ng~ylA~G---------S~~GiVNIYd~~s~~~s~~PkPik~~-- 431 (514)
T KOG2055|consen 375 ----QNSCLHRFVDDGSVHGTSLCI-SL-------NGSYLATG---------SDSGIVNIYDGNSCFASTNPKPIKTV-- 431 (514)
T ss_pred ----CcceEEEEeecCccceeeeee-cC-------CCceEEec---------cCcceEEEeccchhhccCCCCchhhh--
Confidence 001222222222225555432 12 24599999 5789999998643 333444322
Q ss_pred cccCcccccchhccc--CceEEEeecc
Q 001003 1149 GSYGPLFSSVQIDFA--SHFFAICSNS 1173 (1192)
Q Consensus 1149 ~~~~~~~~~~~~~~~--~~~~a~~~~~ 1173 (1192)
.-+....+++| || +++||+|+.-
T Consensus 432 dNLtt~Itsl~--Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 432 DNLTTAITSLQ--FNHDAQILAIASRV 456 (514)
T ss_pred hhhheeeeeee--eCcchhhhhhhhhc
Confidence 24556667888 65 7899999865
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.28 E-value=5.4 Score=43.14 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=24.7
Q ss_pred CcEEEEEEcC--CEEEEEEeCCcEEEEEecCCC
Q 001003 659 STVLSVSIAD--PYVLLGMSDGSIRLLVGDPST 689 (1192)
Q Consensus 659 ~~Iv~asi~d--pyvlv~~~dg~i~~l~~d~~~ 689 (1192)
..|.++++.. .+++.+..||.+.+|..+...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~ 42 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE 42 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC
Confidence 4588888865 788888889999999887543
No 9
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.95 E-value=8.6 Score=48.47 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=56.3
Q ss_pred EEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 661 VLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 661 Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
|+++.-+ =.-|+|++.+|+|.+|.+.-+..+.+..- ...+|+++++-+|
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~------d~g~VtslSFrtD----------------------- 255 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ------DWGRVTSLSFRTD----------------------- 255 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc------cccceeEEEeccC-----------------------
Confidence 6655432 24688999999999999876544333221 1356888776433
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccc
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFV 781 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~ 781 (1192)
+...++.+..+|.|.+|.|.+-+++....+..
T Consensus 256 -----------G~p~las~~~~G~m~~wDLe~kkl~~v~~nah 287 (910)
T KOG1539|consen 256 -----------GNPLLASGRSNGDMAFWDLEKKKLINVTRNAH 287 (910)
T ss_pred -----------CCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence 23578889999999999999988876665443
No 10
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.77 E-value=4.2 Score=48.66 Aligned_cols=75 Identities=17% Similarity=0.357 Sum_probs=46.7
Q ss_pred EEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeec
Q 001003 753 YSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRW 832 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~ 832 (1192)
+++|+.++|.|.|+.+--=.++|... + .+.... +.....+...|--+..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~-i---~~~~~~--------------------------~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNEN-I---RESFLS--------------------------KSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-G---GG--T---------------------------SS----EEEEEEEEEE-
T ss_pred EEEEEecCCcEEEEECCCCeEEeecc-c---cccccc--------------------------cccccCeeEEEEEEEec
Confidence 88899999999999986555566532 2 110000 00000122233344456
Q ss_pred CCCC-CccEEEEEecCCcEEEEEEee
Q 001003 833 SAHH-SRPFLFAILTDGTILCYQAYL 857 (1192)
Q Consensus 833 g~~~-~~p~Llv~l~dG~l~~Y~~~~ 857 (1192)
+++. ..|.|+|++..|++++|++.+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEec
Confidence 6554 789999999999999999975
No 11
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.60 E-value=4.6 Score=51.26 Aligned_cols=122 Identities=15% Similarity=0.241 Sum_probs=79.8
Q ss_pred CCCceeEEecccCCCCCCc-EEEEEe-cCeEEEEEcCCCCc---cCCccceEEEecCCCccCeEEEecCCCEEEEEEeec
Q 001003 950 CDGSIVAFTVLHNVNCNHG-FIYVTS-QGILKICQLPSGST---YDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVP 1024 (1192)
Q Consensus 950 ~~~~v~~~t~F~~~~c~~G-fi~~~~-~~~LrI~~l~~~~~---~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~ 1024 (1192)
.+++|.+..=+ |+| |+.+.+ +|.++|-.+.+..- +..-.+..- .-+.+...+.++||.++.+++.+.+
T Consensus 137 h~apVl~l~~~-----p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-~~~s~i~~~~aW~Pk~g~la~~~~d- 209 (933)
T KOG1274|consen 137 HDAPVLQLSYD-----PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-FILSRICTRLAWHPKGGTLAVPPVD- 209 (933)
T ss_pred cCCceeeeeEc-----CCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-ccccceeeeeeecCCCCeEEeeccC-
Confidence 34677776542 333 454433 69999999986531 122222222 3334457889999999999996432
Q ss_pred CccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEecccc
Q 001003 1025 VLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTT 1104 (1192)
Q Consensus 1025 ~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~ 1104 (1192)
.+|+++++. +|+..-.+.....+.. +..+++.
T Consensus 210 ---------------------------------------~~Vkvy~r~----~we~~f~Lr~~~~ss~--~~~~~ws--- 241 (933)
T KOG1274|consen 210 ---------------------------------------NTVKVYSRK----GWELQFKLRDKLSSSK--FSDLQWS--- 241 (933)
T ss_pred ---------------------------------------CeEEEEccC----Cceeheeecccccccc--eEEEEEc---
Confidence 268899985 9998655555555554 4555553
Q ss_pred CCCCceEEEEEeccccCcccccCceEEEEEeee
Q 001003 1105 TKENETLLAIGTAYVQGEDVAARGRVLLFSTGR 1137 (1192)
Q Consensus 1105 t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~ 1137 (1192)
....|||-|| ..|.|+||++..
T Consensus 242 --PnG~YiAAs~---------~~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 --PNGKYIAAST---------LDGQILVWNVDT 263 (933)
T ss_pred --CCCcEEeeec---------cCCcEEEEeccc
Confidence 2467999995 688999999975
No 12
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.83 E-value=4.1 Score=47.97 Aligned_cols=44 Identities=9% Similarity=0.277 Sum_probs=39.4
Q ss_pred cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 975 QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 975 ~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
++.||+..+|+-..| ..||.+. -|++. +|.++++|.++.++|+.
T Consensus 458 knalrLVHvPS~TVF-sNfP~~n-~~vg~-vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 458 KNALRLVHVPSCTVF-SNFPTSN-TKVGH-VTCMAFSPNSGYLAVGN 501 (514)
T ss_pred ccceEEEeccceeee-ccCCCCC-Ccccc-eEEEEecCCCceEEeec
Confidence 369999999999888 7899998 99988 89999999999999964
No 13
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.36 E-value=4.8 Score=48.33 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCCeEEEEeCCceEEEecCCCCceeEEecccC--CCCCC---cEEEEEecCeEEEEEcCCCCc----cCC
Q 001003 921 SGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHN--VNCNH---GFIYVTSQGILKICQLPSGST----YDN 991 (1192)
Q Consensus 921 ~G~~gVF~~G~rP~wi~~~~g~l~~~p~~~~~~v~~~t~F~~--~~c~~---Gfi~~~~~~~LrI~~l~~~~~----~d~ 991 (1192)
+..+.|+|.|+|-.+.+..+|.+++.-- .+-.-.||++|.. .+-++ -++..+.++.|.|.+=..+.. -..
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~ 329 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHV 329 (418)
T ss_pred CCCceEEEEecceEEEEcCCCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCC
Confidence 3667899999999888888999998663 5677889999998 33333 277778888888877333210 013
Q ss_pred ccceEEEecCCCccCeEEEecCCCEE
Q 001003 992 YWPVQKVIPLKATPHQITYFAEKNLY 1017 (1192)
Q Consensus 992 ~~~vrk~ipL~~tp~~Iay~~~~~~y 1017 (1192)
+..++. -.+...+--|+-..+.+..
T Consensus 330 PVal~v-~~~~~~~G~IV~Ls~~G~L 354 (418)
T PF14727_consen 330 PVALSV-ANFNGLKGLIVSLSDEGQL 354 (418)
T ss_pred CEEEEe-cccCCCCceEEEEcCCCcE
Confidence 334444 4444444445554444443
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.76 E-value=16 Score=39.27 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=31.6
Q ss_pred CcEEEEEe-cCeEEEEEcCCCCccCCccceEEEecCCC-ccCeEEEecCCCEEEEE
Q 001003 967 HGFIYVTS-QGILKICQLPSGSTYDNYWPVQKVIPLKA-TPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 967 ~Gfi~~~~-~~~LrI~~l~~~~~~d~~~~vrk~ipL~~-tp~~Iay~~~~~~y~v~ 1020 (1192)
+.+++... ++.+++..+.... +++. +.... .+..+++++..+.++++
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~------~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGK------CVAT-LTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccc------ccee-EecCccccceEEECCCcCEEEEe
Confidence 45666665 7889998887543 4455 55444 57888898887666664
No 15
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.74 E-value=30 Score=41.73 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=58.9
Q ss_pred eEEEEcCCeEEEEEEEEeccCCccccCCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEE
Q 001003 57 NLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILA 136 (1192)
Q Consensus 57 nLVvak~n~LeIy~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~ 136 (1192)
.|+|--.+.|.||.+... +|..+. .+..+|+++.++.|--..-+|..-++.+.. ++|.|.|=
T Consensus 90 ~LaVLhP~kl~vY~v~~~-~g~~~~--------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~---~~~~IcVQ 151 (418)
T PF14727_consen 90 QLAVLHPRKLSVYSVSLV-DGTVEH--------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVK---GRDFICVQ 151 (418)
T ss_pred eEEEecCCEEEEEEEEec-CCCccc--------------CcEEEEEEEEEEecccceeEEEEEECCCCC---CceEEEEE
Confidence 788889999999999532 121000 123569999999999999999998988762 58999999
Q ss_pred eCCCeEEEEEEeC
Q 001003 137 FEDAKISVLEFDD 149 (1192)
Q Consensus 137 ~~~aklsil~~d~ 149 (1192)
+-||+|++.+.|.
T Consensus 152 S~DG~L~~feqe~ 164 (418)
T PF14727_consen 152 SMDGSLSFFEQES 164 (418)
T ss_pred ecCceEEEEeCCc
Confidence 9999999988763
No 16
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.76 E-value=5.8 Score=38.45 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=55.7
Q ss_pred cCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCce
Q 001003 628 ERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPV 707 (1192)
Q Consensus 628 ~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i 707 (1192)
...||+++.+..+.++.-. +.-+.-+.+...+.+-++++|+|.+|.... .+-.+. ..+++
T Consensus 24 D~~IRvf~~~e~~~Ei~e~-----------~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiK-------SK~~~ 83 (111)
T PF14783_consen 24 DFEIRVFKGDEIVAEITET-----------DKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIK-------SKNQV 83 (111)
T ss_pred CcEEEEEeCCcEEEEEecc-----------cceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeec-------cCCCe
Confidence 5568998888766554431 112344556778899999999999997632 112222 14457
Q ss_pred eEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEE
Q 001003 708 SSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1192)
Q Consensus 708 ~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I 765 (1192)
.|++.| |... ....=++++|.||.+++
T Consensus 84 ~~~~~~-D~~g------------------------------dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 84 TSMAFY-DING------------------------------DGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEE-cCCC------------------------------CCceEEEEEecCCeEEe
Confidence 777777 4310 12346889999999975
No 17
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.78 E-value=41 Score=38.27 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=46.6
Q ss_pred CceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecc-eEEeeehhhh
Q 001003 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLFSFL 1183 (1192)
Q Consensus 1108 ~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~ 1183 (1192)
.+.+++|| |+| +-|.+||-.+..---+.+.++...|..+. + .+--+.+|++.++- ++.||--.|.
T Consensus 218 ~~~~L~vG-----~d~----~~i~~~D~ds~~~~~~~~AH~~RVK~i~~-~-~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 218 DGSELLVG-----GDN----EWISLKDTDSDTPLTEFLAHENRVKDIAS-Y-TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEe-----cCC----ceEEEeccCCCccceeeecchhheeeeEE-E-ecCCceEEEEeccCceEEEEEcccc
Confidence 35788888 444 78899988863333466777888888875 2 23346788888776 9999988876
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=87.47 E-value=72 Score=38.70 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=89.6
Q ss_pred eEEEEEeccceEEEEec-CceeeeecccCccccCCcEEEEeeCCCCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCC
Q 001003 577 AYLIISLEARTMVLETA-DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSG 655 (1192)
Q Consensus 577 ~yLvlS~~~~T~Vl~~g-~~~eEv~~~~gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~ 655 (1192)
.++.++..+.-++..+. ..+ +...-+....+-+.++...++...|-+|-++|.++........+++.
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~---t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~--------- 443 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGY---TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG--------- 443 (603)
T ss_pred cEEEEecCCeEEEEecccCcc---cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc---------
Confidence 45555555555565542 222 11112345555666666656678888999999999866555555541
Q ss_pred CCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 656 SENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 656 ~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
-....++.+--..+++|+-.||.|.+|.+......-+..... ....|++++.-.|
T Consensus 444 -y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~----h~a~iT~vaySpd-------------------- 498 (603)
T KOG0318|consen 444 -YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE----HRAAITDVAYSPD-------------------- 498 (603)
T ss_pred -cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec----ccCCceEEEECCC--------------------
Confidence 122356666678899999999999999987654322211111 1335666643211
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
. .+++.+-.++.+.+|++.+-+.
T Consensus 499 --------------~-~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 499 --------------G-AYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred --------------C-cEEEEeccCCcEEEEEcccCce
Confidence 1 2888899999999999877444
No 19
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.71 E-value=5.9 Score=44.71 Aligned_cols=83 Identities=14% Similarity=0.256 Sum_probs=60.9
Q ss_pred CCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 657 ENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 657 ~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
....|+++++..||++=+.+|.+|.+|.+..... ...+.+....|.|+.+|...+
T Consensus 42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~~q------lg~ll~HagsitaL~F~~~~S------------------- 96 (362)
T KOG0294|consen 42 HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ------LGILLSHAGSITALKFYPPLS------------------- 96 (362)
T ss_pred cccceeEEEecceeEeccCCCCcEEEEeccchhh------hcceeccccceEEEEecCCcc-------------------
Confidence 4567999999999999999999999998754321 112223355688877764321
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
.+ |+.-+-+||.+.||+.-+++++-+.+
T Consensus 97 -------------~s-hLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 97 -------------KS-HLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred -------------hh-heeeecCCCcEEEEEcCCeEEeeeec
Confidence 12 78889999999999999988875554
No 20
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.62 E-value=50 Score=41.91 Aligned_cols=206 Identities=15% Similarity=0.181 Sum_probs=116.7
Q ss_pred CcEEEEEEcCCEEEE-EEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 659 STVLSVSIADPYVLL-GMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 659 ~~Iv~asi~dpyvlv-~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
..|..++=...+.|| +.-|.|+++|....+.| |.+ +. ...-|+|+.+.
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C-L~~-----F~-HndfVTcVaFn------------------------ 418 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC-LKV-----FS-HNDFVTCVAFN------------------------ 418 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCcce-eeE-----Ee-cCCeeEEEEec------------------------
Confidence 346666666555555 66799999999987777 332 21 24457776542
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCccc
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKE 817 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1192)
|+| ..|+ +-+--+|.++||++|+.+.++=.+ ++.
T Consensus 419 PvD---------DryF-iSGSLD~KvRiWsI~d~~Vv~W~D----l~~-------------------------------- 452 (712)
T KOG0283|consen 419 PVD---------DRYF-ISGSLDGKVRLWSISDKKVVDWND----LRD-------------------------------- 452 (712)
T ss_pred ccC---------CCcE-eecccccceEEeecCcCeeEeehh----hhh--------------------------------
Confidence 222 1333 334458999999999988765443 222
Q ss_pred ccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCC
Q 001003 818 NIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPL 897 (1192)
Q Consensus 818 ~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~ 897 (1192)
.|.-+++.+ ..-|-++++-+|....|...-..-. .+. .|+-
T Consensus 453 -----lITAvcy~P-----dGk~avIGt~~G~C~fY~t~~lk~~---------------------~~~---~I~~----- 493 (712)
T KOG0283|consen 453 -----LITAVCYSP-----DGKGAVIGTFNGYCRFYDTEGLKLV---------------------SDF---HIRL----- 493 (712)
T ss_pred -----hheeEEecc-----CCceEEEEEeccEEEEEEccCCeEE---------------------Eee---eEee-----
Confidence 233333322 2456678888999999986410000 000 0010
Q ss_pred CccCCCCCCCCCCccceEEeeccCCceEEEEcCCCCeEEEEe-CCceEEEecCCCCceeEEecccCCCCCCcEEEEEecC
Q 001003 898 DAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQG 976 (1192)
Q Consensus 898 ~~~~~~~~~~~~g~~~l~~f~~i~G~~gVF~~G~rP~wi~~~-~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~ 976 (1192)
+..+ +..+. +|+-|+-. .|+.--+|+.+ ..++|++-......|.-|-.|+|.+-+.- ..++.+|
T Consensus 494 ----~~~K-k~~~~-rITG~Q~~--------p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~-Asfs~Dg 558 (712)
T KOG0283|consen 494 ----HNKK-KKQGK-RITGLQFF--------PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS-ASFSSDG 558 (712)
T ss_pred ----ccCc-cccCc-eeeeeEec--------CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee-eeEccCC
Confidence 0000 00111 34433321 12221234443 68899988643455777888888776554 7888888
Q ss_pred eEEEEEcCCCCccCCccceEE
Q 001003 977 ILKICQLPSGSTYDNYWPVQK 997 (1192)
Q Consensus 977 ~LrI~~l~~~~~~d~~~~vrk 997 (1192)
.--||.-++.+-| -|....
T Consensus 559 k~IVs~seDs~VY--iW~~~~ 577 (712)
T KOG0283|consen 559 KHIVSASEDSWVY--IWKNDS 577 (712)
T ss_pred CEEEEeecCceEE--EEeCCC
Confidence 8888888877766 666543
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=78.63 E-value=1.7e+02 Score=35.76 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=39.5
Q ss_pred CceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecc-eEEee
Q 001003 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVF 1178 (1192)
Q Consensus 1108 ~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~ 1178 (1192)
.+.++||| ||| |.++||.+.-..-..| ....+-.+..+.|.+--.|..||+|-.+ +|-+|
T Consensus 454 ~~~~vaVG-----G~D----gkvhvysl~g~~l~ee--~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 454 DGSEVAVG-----GQD----GKVHVYSLSGDELKEE--AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CCCEEEEe-----ccc----ceEEEEEecCCcccce--eeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 36799999 565 6799999975332223 1223444555555566789999999888 55544
No 22
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=78.00 E-value=87 Score=38.62 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.7
Q ss_pred EEEEEEecCCeEEEEECCCceeeEEee
Q 001003 752 IYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 752 ~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
.|++-+.++|+++||.+-...++.++.
T Consensus 413 ~wlasGsdDGtvriWEi~TgRcvr~~~ 439 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATGRCVRTVQ 439 (733)
T ss_pred ceeeecCCCCcEEEEEeecceEEEEEe
Confidence 499999999999999999988876664
No 23
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=77.78 E-value=1.1 Score=55.97 Aligned_cols=91 Identities=15% Similarity=-0.027 Sum_probs=69.4
Q ss_pred ccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeeeeeeccccccccCCccccc
Q 001003 99 ASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFA 178 (1192)
Q Consensus 99 ~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh~~E~~~~~~~~~G~~~~~ 178 (1192)
.-|++..+.+.||+|. |..+.-+++ + .-+++-||++.+|||+.. +-+||++|+- ...-.-...
T Consensus 87 s~lrf~sq~n~f~Tis-lhyyeGKfk----g----ksLvelak~stle~D~~s----scaLlfneDi----~~flpfhvn 149 (1319)
T COG5161 87 SLLRFDSQANEFRTIS-LHYYEGKFK----G----KSLVELAKFSTLEFDIRS----SCALLFNEDI----GNFLPFHVN 149 (1319)
T ss_pred EEEEehhhcccceeEE-EeeeccccC----C----chhhhhhhhhheeeccCc----cchhhhhhhh----hhccccccc
Confidence 4588888999999998 888877764 3 345778999999999986 4589999983 111111123
Q ss_pred CCCeEEECCCCcEEEEEEcCceEEEEeC
Q 001003 179 RGPLVKVDPQGRCGGVLVYGLQMIILKA 206 (1192)
Q Consensus 179 ~~~~l~VDP~~Rc~~l~~y~~~L~ilP~ 206 (1192)
.+....|||+.-|.++....++++|+|-
T Consensus 150 kndddev~~d~D~~~~~~~~~h~~i~ps 177 (1319)
T COG5161 150 KNDDDEVRIDVDLGMFQMSKRHFSIFPS 177 (1319)
T ss_pred CCccccccccccccHHHHHHHHhhcCCC
Confidence 3456789999999999999999999985
No 24
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=75.86 E-value=1.7e+02 Score=34.32 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=34.9
Q ss_pred cEEEEEec--CeEEEEEcCCCC-ccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 968 GFIYVTSQ--GILKICQLPSGS-TYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 968 Gfi~~~~~--~~LrI~~l~~~~-~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
.++|+..- +.+++..++... +|.. ...-+ +|.|.-||++++||+.+.+.|++
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIK-VPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEE-CSTTSSEEEEEE-TTSSEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEE-eeccc-cccCCCCcEEEEcCCcCEEEEec
Confidence 47777653 478888887654 2322 23346 89999999999999988766654
No 25
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=72.54 E-value=2e+02 Score=33.68 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=92.5
Q ss_pred cEEEEeeCCCCEEEEEecCcEEEEeCCc--ceeeeecCCCCCCCCCCCCCCcEEEEEEcCC--EEEE--EEeCCcEEEEE
Q 001003 611 TIAAGNLFGRRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADP--YVLL--GMSDGSIRLLV 684 (1192)
Q Consensus 611 TI~ag~l~~~~~IvQVt~~~vrli~~~~--~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dp--yvlv--~~~dg~i~~l~ 684 (1192)
.|.+-.| +++|+|-+....|-++|-.. .++.|. +|. | ......+.|++.. |++. ....|+|++|.
T Consensus 89 ~IL~Vrm-Nr~RLvV~Lee~IyIydI~~MklLhTI~------t~~-~-n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 89 SILAVRM-NRKRLVVCLEESIYIYDIKDMKLLHTIE------TTP-P-NPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred ceEEEEE-ccceEEEEEcccEEEEecccceeehhhh------ccC-C-CccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 4666667 78899989999999998653 233222 331 1 2233666666544 8777 45578999998
Q ss_pred ecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCe-E
Q 001003 685 GDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGA-L 763 (1192)
Q Consensus 685 ~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~-l 763 (1192)
+..-...- .+...+..++|+.+-.| + .+++-+-+.|+ +
T Consensus 160 ~~nl~~v~------~I~aH~~~lAalafs~~----------------------------------G-~llATASeKGTVI 198 (391)
T KOG2110|consen 160 TINLQPVN------TINAHKGPLAALAFSPD----------------------------------G-TLLATASEKGTVI 198 (391)
T ss_pred cccceeee------EEEecCCceeEEEECCC----------------------------------C-CEEEEeccCceEE
Confidence 75422111 12224567777654211 1 24555555554 5
Q ss_pred EEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeecCCCCCccEEEE
Q 001003 764 EIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFA 843 (1192)
Q Consensus 764 ~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv 843 (1192)
++|+.|+-+.++... +-.. -..|.++. |+ .+.+||.+
T Consensus 199 RVf~v~~G~kl~eFR------RG~~--------------------------------~~~IySL~---Fs--~ds~~L~~ 235 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFR------RGTY--------------------------------PVSIYSLS---FS--PDSQFLAA 235 (391)
T ss_pred EEEEcCCccEeeeee------CCce--------------------------------eeEEEEEE---EC--CCCCeEEE
Confidence 788888877766553 1100 12344443 43 45679999
Q ss_pred EecCCcEEEEEEee
Q 001003 844 ILTDGTILCYQAYL 857 (1192)
Q Consensus 844 ~l~dG~l~~Y~~~~ 857 (1192)
.-..+++.+|++-.
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 99999999999853
No 26
>PTZ00420 coronin; Provisional
Probab=71.53 E-value=1.2e+02 Score=38.20 Aligned_cols=148 Identities=7% Similarity=0.130 Sum_probs=77.4
Q ss_pred ecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCcc
Q 001003 974 SQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSV 1053 (1192)
Q Consensus 974 ~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~ 1053 (1192)
.++.++|-.+.... .+.. +.....+..+++++..+.++..+.
T Consensus 146 ~DgtIrIWDl~tg~------~~~~-i~~~~~V~SlswspdG~lLat~s~------------------------------- 187 (568)
T PTZ00420 146 FDSFVNIWDIENEK------RAFQ-INMPKKLSSLKWNIKGNLLSGTCV------------------------------- 187 (568)
T ss_pred CCCeEEEEECCCCc------EEEE-EecCCcEEEEEECCCCCEEEEEec-------------------------------
Confidence 35688887776554 3455 655566888999998876654321
Q ss_pred ccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEE
Q 001003 1054 DLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLF 1133 (1192)
Q Consensus 1054 ~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvf 1133 (1192)
...|+++|+. +++.+.+++- ++.....+.+.+... ++...+|+.+. + |-...+.|.||
T Consensus 188 ---------D~~IrIwD~R----sg~~i~tl~g--H~g~~~s~~v~~~~f--s~d~~~IlTtG-~----d~~~~R~VkLW 245 (568)
T PTZ00420 188 ---------GKHMHIIDPR----KQEIASSFHI--HDGGKNTKNIWIDGL--GGDDNYILSTG-F----SKNNMREMKLW 245 (568)
T ss_pred ---------CCEEEEEECC----CCcEEEEEec--ccCCceeEEEEeeeE--cCCCCEEEEEE-c----CCCCccEEEEE
Confidence 1157888885 6677655443 333222233333211 11223444431 1 11233469999
Q ss_pred EeeeCCCCCce-eEeecccCcccccchhcccCceEEEe-ecceEEeeehhhh
Q 001003 1134 STGRNADNPQN-LVLSGSYGPLFSSVQIDFASHFFAIC-SNSFVFVFLFSFL 1183 (1192)
Q Consensus 1134 ev~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~ 1183 (1192)
++-... +|-. .......+.+.... ....|.+++++ +-+.+++|++...
T Consensus 246 Dlr~~~-~pl~~~~ld~~~~~L~p~~-D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 246 DLKNTT-SALVTMSIDNASAPLIPHY-DESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ECCCCC-CceEEEEecCCccceEEee-eCCCCCEEEEEECCCeEEEEEccCC
Confidence 987422 2222 22222223322211 12346655544 6779999998643
No 27
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=69.36 E-value=1.1e+02 Score=35.15 Aligned_cols=53 Identities=6% Similarity=0.136 Sum_probs=41.0
Q ss_pred cEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEe
Q 001003 968 GFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVS 1022 (1192)
Q Consensus 968 Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s 1022 (1192)
-|+-+..++.+||-.+.+-..-++..--+. +|++ +|.+++|.|+-+.++|.+-
T Consensus 100 ~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~d-hpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 100 KLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYD-HPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred eeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCC-CceEEEECCCcceEEEEEc
Confidence 455556667899988887654455555666 8888 9999999999999999775
No 28
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.44 E-value=94 Score=37.38 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=61.6
Q ss_pred cCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCC-EEEEEEeCCcEEEEEecCCCceEeeccccccccCCCc
Q 001003 628 ERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADP-YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKP 706 (1192)
Q Consensus 628 ~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dp-yvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~ 706 (1192)
..-||++|..... .+.+ ++ . .|..|-.+-.-.+ .+++.+.+.++.+|.+...+.++- .+.+..+.
T Consensus 175 Dg~vrl~DtR~~~-~~v~-el--n-----hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~-----~~~~H~Kt 240 (487)
T KOG0310|consen 175 DGKVRLWDTRSLT-SRVV-EL--N-----HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT-----SMFNHNKT 240 (487)
T ss_pred CceEEEEEeccCC-ceeE-Ee--c-----CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh-----hhhcccce
Confidence 4568998865431 1111 11 1 2333555555444 666677788999998875544332 12224678
Q ss_pred eeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEee
Q 001003 707 VSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 707 i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
|+|++++.+. +.++-.. -+|.+.||++-+++.++.-.
T Consensus 241 VTcL~l~s~~----------------------------------~rLlS~s-LD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 241 VTCLRLASDS----------------------------------TRLLSGS-LDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred EEEEEeecCC----------------------------------ceEeecc-cccceEEEEccceEEEEeee
Confidence 9999887432 1233333 37999999999999987775
No 29
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=67.74 E-value=2.4e+02 Score=32.58 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=88.7
Q ss_pred cceEEEEEec-----------cceEEEEecC------ceeeeecccCccccCCcEEEEeeCCCCEEEEEecCcEEEEeCC
Q 001003 575 YHAYLIISLE-----------ARTMVLETAD------LLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS 637 (1192)
Q Consensus 575 ~~~yLvlS~~-----------~~T~Vl~~g~------~~eEv~~~~gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~ 637 (1192)
...||++... ..-.+|++.+ .++.+.. ...+++-.++..+ ++ ++|=-..+.|++++-+
T Consensus 41 ~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~ 115 (321)
T PF03178_consen 41 KKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLD 115 (321)
T ss_dssp SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEE-TT-EEEEEETTEEEEEEEE
T ss_pred ccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhh-CC-EEEEeecCEEEEEEcc
Confidence 3578888543 3456777765 5666542 2346677777777 34 4776778888888743
Q ss_pred c-c-eeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeecc
Q 001003 638 Y-M-TQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHD 715 (1192)
Q Consensus 638 ~-~-~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d 715 (1192)
. . +..... |. ....|++.++.+++++++..-.++.++..+++...+....... ...++.++++..|
T Consensus 116 ~~~~l~~~~~------~~---~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d 183 (321)
T PF03178_consen 116 NSKTLLKKAF------YD---SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVD 183 (321)
T ss_dssp TTSSEEEEEE------E----BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-S
T ss_pred Ccccchhhhe------ec---ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecC
Confidence 2 2 222222 12 2346999999999999999999999998877555443222211 2445666654311
Q ss_pred CCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 716 KGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
. . .++++..+|.+.+++.|.
T Consensus 184 ---------------------------------~-~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 184 ---------------------------------E-D-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ---------------------------------S-S-EEEEEETTSEEEEEEE-S
T ss_pred ---------------------------------C-c-EEEEEcCCCeEEEEEECC
Confidence 1 2 566788899999999873
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.18 E-value=1.5e+02 Score=32.64 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=19.0
Q ss_pred EEEEEecCCeEEEEECCCceeeEEe
Q 001003 753 YSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
.++-+-++|.+.+|+|-+-.++...
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeee
Confidence 5666889999999999876655433
No 31
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=66.50 E-value=77 Score=35.18 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=76.4
Q ss_pred CccccCCcEEEEeeCCCC--EEEEEecCcEEEEeCC-cceeeeecCCCC---CCCCCCCCCCcEEEEEEcCCEEEEEEeC
Q 001003 604 DYFVQGRTIAAGNLFGRR--RVIQVFERGARILDGS-YMTQDLSFGPSN---SESGSGSENSTVLSVSIADPYVLLGMSD 677 (1192)
Q Consensus 604 gF~~~~~TI~ag~l~~~~--~IvQVt~~~vrli~~~-~~~q~i~~~~~~---~e~~~~~~~~~Iv~asi~dpyvlv~~~d 677 (1192)
+=..+.|.|++..-.... .|--+-..|+|+||-. ++.|.++...+. ...+.+-.+..|.-|..+|.+ .
T Consensus 50 ~daADDPAIwVh~t~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~------~ 123 (364)
T COG4247 50 NDAADDPAIWVHATNPDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQ------N 123 (364)
T ss_pred CcccCCcceEeccCCcCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEeccccc------C
Confidence 334677888887664333 2444556789999854 355544332211 011222235566666666654 7
Q ss_pred CcEEEEEecCCCceEeeccccc--cccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEE
Q 001003 678 GSIRLLVGDPSTCTVSVQTPAA--IESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSV 755 (1192)
Q Consensus 678 g~i~~l~~d~~~~~l~~~~~~~--l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (1192)
..|.+|.+|++...|+-..-.. .++..++.-..|||++.. ...++++
T Consensus 124 ~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~k-------------------------------tgd~yvf 172 (364)
T COG4247 124 DKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPK-------------------------------TGDYYVF 172 (364)
T ss_pred CeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCC-------------------------------cCcEEEE
Confidence 7899999999876665332221 112233344467875431 2358999
Q ss_pred EEecCCeEEEEECCC
Q 001003 756 VCYESGALEIFDVPN 770 (1192)
Q Consensus 756 v~~~~g~l~I~sLP~ 770 (1192)
|.+..|.++=|+|-+
T Consensus 173 V~~~qG~~~Qy~l~d 187 (364)
T COG4247 173 VNRRQGDIAQYKLID 187 (364)
T ss_pred EecCCCceeEEEEEe
Confidence 988889998888754
No 32
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=66.08 E-value=1e+02 Score=35.75 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred ccEEEEEeC-CCeEEEEEEeCCCCCEEEEeeeeeeccccccccCCcccccCCCeEEECCCCcEEEEE-EcCceEEEEeCc
Q 001003 130 RDSIILAFE-DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVL-VYGLQMIILKAS 207 (1192)
Q Consensus 130 ~D~Llv~~~-~aklsil~~d~~~~~l~t~Slh~~E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~-~y~~~L~ilP~~ 207 (1192)
..+..+..+ +..+.+++||+..++|..+--+. . ++.+........-+.+.|+||..-.+ =+.+.|++.-..
T Consensus 202 ~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~--t-----lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 202 GKYAYLVNELNSTVDVLEYNPAVGKFEELQTID--T-----LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CcEEEEEeccCCEEEEEEEcCCCceEEEeeeec--c-----CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 556666666 78999999999988887643332 1 22223333344668999999998776 445667776443
Q ss_pred c
Q 001003 208 Q 208 (1192)
Q Consensus 208 ~ 208 (1192)
+
T Consensus 275 ~ 275 (346)
T COG2706 275 P 275 (346)
T ss_pred C
Confidence 3
No 33
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=63.78 E-value=60 Score=39.24 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=43.2
Q ss_pred EEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCC
Q 001003 670 YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQ 749 (1192)
Q Consensus 670 yvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1192)
.++-...||++++|.++.....+++.++.......-.+++ |-|+- .
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts-C~~nr---------------------------------d 328 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS-CAWNR---------------------------------D 328 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee-eecCC---------------------------------C
Confidence 3445557999999999876555666666555322223333 33311 1
Q ss_pred CcEEEEEEecCCeEEEEECCCcee
Q 001003 750 GDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 750 ~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
. .|.+.+..+|+++||+++++..
T Consensus 329 g-~~iAagc~DGSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 329 G-KLIAAGCLDGSIQIWDKGSRTV 351 (641)
T ss_pred c-chhhhcccCCceeeeecCCccc
Confidence 1 2566677799999999987543
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.38 E-value=1.2e+02 Score=35.33 Aligned_cols=66 Identities=20% Similarity=0.436 Sum_probs=47.9
Q ss_pred CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCC
Q 001003 668 DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPL 747 (1192)
Q Consensus 668 dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1192)
.+|+..+..|++|+++.+....+++.+.. .++.|..+.+- |
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~g------hdnwVr~~af~----p----------------------------- 344 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVG------HDNWVRGVAFS----P----------------------------- 344 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEec------ccceeeeeEEc----C-----------------------------
Confidence 46888899999999999887667666443 24455544331 0
Q ss_pred CCCcEEEEEEecCCeEEEEECCCceee
Q 001003 748 DQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 748 ~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
...|++-|-+|++|+||+|.+.++.
T Consensus 345 --~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 345 --GGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred --CCeEEEEEecCCcEEEEEeccceee
Confidence 1248888999999999999887764
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=61.85 E-value=94 Score=36.05 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=42.5
Q ss_pred cEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEe
Q 001003 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1192)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~ 830 (1192)
+.|++-+-.++++.||.|.+-++..+..+. -..++++.+.
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGh----------------------------------------i~~vr~vavS 202 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGH----------------------------------------IETVRGVAVS 202 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecch----------------------------------------hheeeeeeec
Confidence 358888888999999999886665444311 0123334332
Q ss_pred ecCCCCCccEEEEEecCCcEEEEEE
Q 001003 831 RWSAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 831 ~~g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
...||||....|+++-.|.+
T Consensus 203 -----~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 203 -----KRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred -----ccCceEEEecCCCeeEEEec
Confidence 35799999999999998886
No 36
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=61.56 E-value=2.2e+02 Score=32.71 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=17.0
Q ss_pred ccEEEEEecCCcEEEEEEe
Q 001003 838 RPFLFAILTDGTILCYQAY 856 (1192)
Q Consensus 838 ~p~Llv~l~dG~l~~Y~~~ 856 (1192)
.-||-++..||.|++|.+-
T Consensus 35 G~~lAvGc~nG~vvI~D~~ 53 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFD 53 (405)
T ss_pred cceeeeeccCCcEEEEEcc
Confidence 4799999999999999974
No 37
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=61.41 E-value=4.3e+02 Score=33.39 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=37.0
Q ss_pred CceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecceEEee
Q 001003 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVF 1178 (1192)
Q Consensus 1108 ~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1178 (1192)
..+||||- .++|-|++|.+-...-++=-.+.-....++..+ -+-++.+..+=+++.||=|
T Consensus 486 dG~yiaa~---------~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~--~~~~~~lvvats~nQv~ef 545 (691)
T KOG2048|consen 486 DGNYIAAI---------STRGQIFVYNLETLESHLLKVRLNIDVTAAAFS--PFVRNRLVVATSNNQVFEF 545 (691)
T ss_pred CCCEEEEE---------eccceEEEEEcccceeecchhccCcceeeeecc--ccccCcEEEEecCCeEEEE
Confidence 35799987 478999999986533333222222233343332 2467888888888887644
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=61.39 E-value=2.8e+02 Score=31.29 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCCccCCccceEEEec---CCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCc
Q 001003 976 GILKICQLPSGSTYDNYWPVQKVIP---LKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSS 1052 (1192)
Q Consensus 976 ~~LrI~~l~~~~~~d~~~~vrk~ip---L~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 1052 (1192)
..+||-..... ..|..|. +- -.+++|+||+.|..++++.++-..
T Consensus 37 k~vriw~~~~~----~s~~ck~-vld~~hkrsVRsvAwsp~g~~La~aSFD~---------------------------- 83 (312)
T KOG0645|consen 37 KAVRIWSTSSG----DSWTCKT-VLDDGHKRSVRSVAWSPHGRYLASASFDA---------------------------- 83 (312)
T ss_pred ceEEEEecCCC----CcEEEEE-eccccchheeeeeeecCCCcEEEEeeccc----------------------------
Confidence 36777666642 2477776 43 356899999999999555543211
Q ss_pred cccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCc-eEE
Q 001003 1053 VDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARG-RVL 1131 (1192)
Q Consensus 1053 ~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rG-RIl 1131 (1192)
.+-+.... +..||.++.+|=.+|| +|+|... .+ ..|||-.+ |+ .+.
T Consensus 84 ------------t~~Iw~k~--~~efecv~~lEGHEnE----VK~Vaws---~s--G~~LATCS----------RDKSVW 130 (312)
T KOG0645|consen 84 ------------TVVIWKKE--DGEFECVATLEGHENE----VKCVAWS---AS--GNYLATCS----------RDKSVW 130 (312)
T ss_pred ------------eEEEeecC--CCceeEEeeeeccccc----eeEEEEc---CC--CCEEEEee----------CCCeEE
Confidence 11122222 2488888888888888 4888775 22 36888763 33 488
Q ss_pred EEEeeeCCCCCceeEeecccCcccccchhcccC--ceEEEeecc-eEEeee
Q 001003 1132 LFSTGRNADNPQNLVLSGSYGPLFSSVQIDFAS--HFFAICSNS-FVFVFL 1179 (1192)
Q Consensus 1132 vfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~-~~~~~~ 1179 (1192)
|+|+.+ .+..|....-..-..=+-+|+ ++. .||++|+-- .|.+|-
T Consensus 131 iWe~de-ddEfec~aVL~~HtqDVK~V~--WHPt~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 131 IWEIDE-DDEFECIAVLQEHTQDVKHVI--WHPTEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred EEEecC-CCcEEEEeeeccccccccEEE--EcCCcceeEEeccCCeEEEEe
Confidence 999983 344444321111111111344 566 799999864 666653
No 39
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=59.31 E-value=88 Score=37.36 Aligned_cols=107 Identities=13% Similarity=0.196 Sum_probs=66.9
Q ss_pred CCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEE--cCCEEEEEEeCCcEEEEEecCCCceEeeccc
Q 001003 620 RRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTP 697 (1192)
Q Consensus 620 ~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~ 697 (1192)
+.++.=-+..+|++++.+++...=.++ +++ . .|...++ ...-+-|+-.|.++++|.+.+++. +-...
T Consensus 257 ~~lys~s~Drsvkvw~~~~~s~vetly------GHq-d--~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg- 325 (479)
T KOG0299|consen 257 SELYSASADRSVKVWSIDQLSYVETLY------GHQ-D--GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRG- 325 (479)
T ss_pred cceeeeecCCceEEEehhHhHHHHHHh------CCc-c--ceeeechhcccceEEeccccceeEEEeccccce-eeeeC-
Confidence 344555556778887765432111111 333 2 3555555 455666676799999999955443 22111
Q ss_pred cccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEe
Q 001003 698 AAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 698 ~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
....+-|+|+.++. -.+.+-+||++.+|++-.++++|+.
T Consensus 326 -----~~~sidcv~~In~~------------------------------------HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 326 -----GEGSIDCVAFINDE------------------------------------HFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred -----CCCCeeeEEEeccc------------------------------------ceeeccCCceEEEeeecccCceeEe
Confidence 24468888886543 2345667999999999999999998
Q ss_pred e
Q 001003 778 D 778 (1192)
Q Consensus 778 ~ 778 (1192)
.
T Consensus 365 ~ 365 (479)
T KOG0299|consen 365 R 365 (479)
T ss_pred e
Confidence 6
No 40
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=59.03 E-value=3.8e+02 Score=32.15 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=55.0
Q ss_pred cceEEEEEeccceEEEEe---cCceeeeecccCccccCCcEEEEeeCCCCEEEEEecCcEEEEeCC--cceeeeecCCCC
Q 001003 575 YHAYLIISLEARTMVLET---ADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGS--YMTQDLSFGPSN 649 (1192)
Q Consensus 575 ~~~yLvlS~~~~T~Vl~~---g~~~eEv~~~~gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~--~~~q~i~~~~~~ 649 (1192)
.-+||+-.-.++|-.|+. |..+.-+.+ . +++--+.++. +||.|..+-.+. ..+..|.+.+.+
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--~--~s~v~~ts~~---------fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSD--E--TSDVEYTSAA---------FHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEee--c--cccceeEEee---------EcCCceEEeccCCCceEEEEEcCCcc
Confidence 346888888888888873 444444432 1 2223334444 444444433222 122222222111
Q ss_pred CCCCCCCCCCcEEEEEEcCC--EEEEEEeCCcEEEEEec
Q 001003 650 SESGSGSENSTVLSVSIADP--YVLLGMSDGSIRLLVGD 686 (1192)
Q Consensus 650 ~e~~~~~~~~~Iv~asi~dp--yvlv~~~dg~i~~l~~d 686 (1192)
.--..|...++|.+.++.++ |++++++|++|++|.+-
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 11122335678999999655 89999999999999873
No 41
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.48 E-value=22 Score=41.35 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEeeeCCCCCc
Q 001003 1064 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1143 (1192)
Q Consensus 1064 ~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e 1143 (1192)
+.||++|+.. -=..+.+|+|. |++.+.. .|- -+ ..+|.+| .++|.+-.||+-... .-
T Consensus 226 hqvR~YDt~~---qRRPV~~fd~~--E~~is~~--~l~---p~--gn~Iy~g---------n~~g~l~~FD~r~~k--l~ 282 (412)
T KOG3881|consen 226 HQVRLYDTRH---QRRPVAQFDFL--ENPISST--GLT---PS--GNFIYTG---------NTKGQLAKFDLRGGK--LL 282 (412)
T ss_pred eeEEEecCcc---cCcceeEeccc--cCcceee--eec---CC--CcEEEEe---------cccchhheecccCce--ee
Confidence 4688999852 22235666665 6665433 232 12 3578888 468889999886521 00
Q ss_pred eeEeecccCcccccchhcccCceEEEeecc-eEEeee
Q 001003 1144 NLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFL 1179 (1192)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 1179 (1192)
-+--+.+++-.++++-.-.+|++|+|+.- .||||-
T Consensus 283 -g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 283 -GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred -ccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 11113566667778877888999999998 788774
No 42
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=57.34 E-value=2.4e+02 Score=30.15 Aligned_cols=121 Identities=14% Similarity=0.220 Sum_probs=71.4
Q ss_pred ceEEEecCCC--ccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcC
Q 001003 994 PVQKVIPLKA--TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEP 1071 (1192)
Q Consensus 994 ~vrk~ipL~~--tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp 1071 (1192)
++.. ++|.. .++.++++|..+.++|+.... | . .|+|++.
T Consensus 50 ~~~~-i~l~~~~~I~~~~WsP~g~~favi~g~~---~----------------------------------~-~v~lyd~ 90 (194)
T PF08662_consen 50 PVES-IELKKEGPIHDVAWSPNGNEFAVIYGSM---P----------------------------------A-KVTLYDV 90 (194)
T ss_pred ccce-eeccCCCceEEEEECcCCCEEEEEEccC---C----------------------------------c-ccEEEcC
Confidence 6777 88854 499999999999999875321 0 1 4556665
Q ss_pred CCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeeccc
Q 001003 1072 DRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSY 1151 (1192)
Q Consensus 1072 ~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~ 1151 (1192)
..+.+..+ .. ..+.+ +... ....|+|+|.-- ...|.|.+|++.+ .+.+...+.
T Consensus 91 -----~~~~i~~~--~~-~~~n~---i~ws-----P~G~~l~~~g~~------n~~G~l~~wd~~~----~~~i~~~~~- 143 (194)
T PF08662_consen 91 -----KGKKIFSF--GT-QPRNT---ISWS-----PDGRFLVLAGFG------NLNGDLEFWDVRK----KKKISTFEH- 143 (194)
T ss_pred -----cccEeEee--cC-CCceE---EEEC-----CCCCEEEEEEcc------CCCcEEEEEECCC----CEEeecccc-
Confidence 23444333 22 23333 3332 234588887531 2448999999973 222221111
Q ss_pred CcccccchhcccCceEEEeecc-------eEEeeehh
Q 001003 1152 GPLFSSVQIDFASHFFAICSNS-------FVFVFLFS 1181 (1192)
Q Consensus 1152 ~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~ 1181 (1192)
...+.++=+-.|+.+|+++.+ .+.||-|.
T Consensus 144 -~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 144 -SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 123445567889999999875 56677664
No 43
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=56.37 E-value=3.6e+02 Score=31.70 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.6
Q ss_pred cCCCCCccEEEEEecCCcEEEEEEee
Q 001003 832 WSAHHSRPFLFAILTDGTILCYQAYL 857 (1192)
Q Consensus 832 ~g~~~~~p~Llv~l~dG~l~~Y~~~~ 857 (1192)
|+.....|++++...||.+.+|++.+
T Consensus 306 l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 306 LSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 44446789999999999999999864
No 44
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=56.11 E-value=4.4e+02 Score=35.17 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=44.6
Q ss_pred ceEEEEcCCCCeEEEE-eCCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCC
Q 001003 923 HQGFFLSGSRPCWCMV-FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSG 986 (1192)
Q Consensus 923 ~~gVF~~G~rP~wi~~-~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~ 986 (1192)
+..=|++=..|.||.+ +..-+++.-+...+.+.+...|...--|+++++..+-+-|-|.+-+..
T Consensus 732 ~as~~~S~qcpeGiv~i~~n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~ 796 (1205)
T KOG1898|consen 732 HASPFCSEQCPEGIVAISKNTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHN 796 (1205)
T ss_pred ccccccccCCCcchhhhhhhhhheeeehhhcccccccccccccCcceEEEecCCCeEEEEEeccc
Confidence 3455677778888875 456666666655567777777777777888888777777777775543
No 45
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=55.38 E-value=3.7e+02 Score=30.82 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCEEEEEecCcEEEEeCCcc--eeeeecCCCCCCCCCCCCCCcEEEEEEcC-CEEEEEEeCCcEEEEEecCCCceEeecc
Q 001003 620 RRRVIQVFERGARILDGSYM--TQDLSFGPSNSESGSGSENSTVLSVSIAD-PYVLLGMSDGSIRLLVGDPSTCTVSVQT 696 (1192)
Q Consensus 620 ~~~IvQVt~~~vrli~~~~~--~q~i~~~~~~~e~~~~~~~~~Iv~asi~d-pyvlv~~~dg~i~~l~~d~~~~~l~~~~ 696 (1192)
+..+|=-....+|||+.... .+.+. .+..|..+...| ..++.+..||.|+.+.++..+. ..
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~------------~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~-~~--- 89 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFK------------HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE-DQ--- 89 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhhee------------cCCceeeeeccCCceEEEeccCceEEEEEecCCcc-ee---
Confidence 34444455677888886542 11111 233488888766 5888899999999998865433 12
Q ss_pred ccccccCCCceeEEEe
Q 001003 697 PAAIESSKKPVSSCTL 712 (1192)
Q Consensus 697 ~~~l~~~~~~i~~~~l 712 (1192)
++.....+.|++-
T Consensus 90 ---igth~~~i~ci~~ 102 (323)
T KOG1036|consen 90 ---IGTHDEGIRCIEY 102 (323)
T ss_pred ---eccCCCceEEEEe
Confidence 2223556777654
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=54.96 E-value=6.3e+02 Score=33.30 Aligned_cols=28 Identities=7% Similarity=0.199 Sum_probs=22.1
Q ss_pred CcEEEEEE--cCCEEEEEEeCCcEEEEEec
Q 001003 659 STVLSVSI--ADPYVLLGMSDGSIRLLVGD 686 (1192)
Q Consensus 659 ~~Iv~asi--~dpyvlv~~~dg~i~~l~~d 686 (1192)
..|.++++ .+.+++.+..||+|.+|...
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~ 513 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECE 513 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 34777777 36788899999999999764
No 47
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=54.04 E-value=3.9e+02 Score=30.67 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=32.1
Q ss_pred EEEEEe--cCeEEEEEcCCCCccCCc-cceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 969 FIYVTS--QGILKICQLPSGSTYDNY-WPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 969 fi~~~~--~~~LrI~~l~~~~~~d~~-~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
++|+.. .+.+++..+.....+... -...+ +|.+..||++++||..+.++|+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-TVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCcee-cCCCCCCceEEECCCCCEEEEEe
Confidence 455544 246666666653322110 12235 77899999999999988777754
No 48
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=53.77 E-value=4e+02 Score=30.63 Aligned_cols=170 Identities=12% Similarity=0.157 Sum_probs=89.1
Q ss_pred EEee-ccCCceEEEEcCCCCeEEEEeCC---ce--EEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCC--
Q 001003 915 TIFK-NISGHQGFFLSGSRPCWCMVFRE---RL--RVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSG-- 986 (1192)
Q Consensus 915 ~~f~-~i~G~~gVF~~G~rP~wi~~~~g---~l--~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~-- 986 (1192)
+.|. +++|..-|..|.+|-..++--|. .+ |-.++ . =.+.|.+.|-| ..||+.-+-+|-.-+--+++.
T Consensus 137 kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-k-yqtR~v~~~pn---~eGy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-K-YQTRCVALVPN---GEGYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccc-e-eEEEEEEEecC---CCceEEEeecceEEEEccCCchH
Confidence 4444 56665555557777755543221 11 11111 1 14666766543 368888777887777777765
Q ss_pred ---CccCCccceEE--EecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccccCcce
Q 001003 987 ---STYDNYWPVQK--VIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTV 1061 (1192)
Q Consensus 987 ---~~~d~~~~vrk--~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~ 1061 (1192)
.+|-..-|-.+ -..+.+-++.|++||-.++|+-+-+. ..
T Consensus 212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD----------------G~-------------------- 255 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD----------------GI-------------------- 255 (323)
T ss_pred HhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC----------------ce--------------------
Confidence 23321222111 01223346677777766666654321 01
Q ss_pred eeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccC---cccccCceEEEEEeeeC
Q 001003 1062 EEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQG---EDVAARGRVLLFSTGRN 1138 (1192)
Q Consensus 1062 ~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g---Ed~~~rGRIlvfev~~~ 1138 (1192)
|-+-++. +=+.+ .+|... -+||.+..|. . ....||||+.+.+. ++..++-+|+|..+.+.
T Consensus 256 ----V~~Wd~~----~rKrl--~q~~~~--~~SI~slsfs---~--dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 256 ----VNIWDLF----NRKRL--KQLAKY--ETSISSLSFS---M--DGSLLAIASSYQYERADTPTHERNAIFIRDLTDY 318 (323)
T ss_pred ----EEEccCc----chhhh--hhccCC--CCceEEEEec---c--CCCeEEEEechhhhcCCCCCCCCCceEEEecccc
Confidence 1111110 11111 133333 2566666664 2 24699999999984 33778899999998764
Q ss_pred CCCC
Q 001003 1139 ADNP 1142 (1192)
Q Consensus 1139 ~~~~ 1142 (1192)
-.+|
T Consensus 319 e~~p 322 (323)
T KOG1036|consen 319 ETKP 322 (323)
T ss_pred ccCC
Confidence 4443
No 49
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=51.26 E-value=6.8e+02 Score=32.59 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 659 STVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 659 ~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
...++.+.|++|++++.+.|+|-.|.+.+.-. ..+-..-+..+.+|..+++ |.
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---r~sf~~~~ah~~~V~gla~--D~---------------------- 503 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---RKSFGDSPAHKGEVTGLAV--DG---------------------- 503 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCee---ecccccCccccCceeEEEe--cC----------------------
Confidence 34566667999999999999999998876422 1111000123445655543 21
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
.+..++-+..+|.+..|+.-...+
T Consensus 504 -----------~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 504 -----------TNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred -----------CCceEEEccCcceEEEEecCCcce
Confidence 123556677789999999876554
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=50.31 E-value=4.5e+02 Score=30.23 Aligned_cols=162 Identities=10% Similarity=0.136 Sum_probs=89.5
Q ss_pred eCCceEEEecCCCCceeEEecccCCCCCC--cEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCE
Q 001003 939 FRERLRVHPQLCDGSIVAFTVLHNVNCNH--GFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNL 1016 (1192)
Q Consensus 939 ~~g~l~~~p~~~~~~v~~~t~F~~~~c~~--Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~ 1016 (1192)
.|..+|+-+= -.+.|++.+. ||. .||-..-++++|+=.|.... +.-- +++.. +--+||+|+.-.
T Consensus 89 dNkylRYF~G-H~~~V~sL~~-----sP~~d~FlS~S~D~tvrLWDlR~~~------cqg~-l~~~~-~pi~AfDp~GLi 154 (311)
T KOG1446|consen 89 DNKYLRYFPG-HKKRVNSLSV-----SPKDDTFLSSSLDKTVRLWDLRVKK------CQGL-LNLSG-RPIAAFDPEGLI 154 (311)
T ss_pred cCceEEEcCC-CCceEEEEEe-----cCCCCeEEecccCCeEEeeEecCCC------CceE-EecCC-CcceeECCCCcE
Confidence 4667777662 2245666554 554 45544445677765555322 1122 33333 235789998888
Q ss_pred EEEEEeecC----------ccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEEC
Q 001003 1017 YPLIVSVPV----------LKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPM 1086 (1192)
Q Consensus 1017 y~v~~s~~~----------~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el 1086 (1192)
||+++-... +.|+.-. . .+++...+|..-+.+.+-..+.-....+.+.++|.-. -+.+.++++
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf--~-i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~----G~~~~tfs~ 227 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTF--S-ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD----GTVKSTFSG 227 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeE--c-cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC----CcEeeeEee
Confidence 888764311 1122100 0 1112234444322233222344445667788999863 358889999
Q ss_pred CCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEee
Q 001003 1087 QSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTG 1136 (1192)
Q Consensus 1087 ~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~ 1136 (1192)
.+++--..+...- .....||..| ...|||++|.+.
T Consensus 228 ~~~~~~~~~~a~f------tPds~Fvl~g---------s~dg~i~vw~~~ 262 (311)
T KOG1446|consen 228 YPNAGNLPLSATF------TPDSKFVLSG---------SDDGTIHVWNLE 262 (311)
T ss_pred ccCCCCcceeEEE------CCCCcEEEEe---------cCCCcEEEEEcC
Confidence 9888755433321 1234688888 678999999993
No 51
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=50.06 E-value=6.8e+02 Score=32.26 Aligned_cols=263 Identities=15% Similarity=0.253 Sum_probs=146.1
Q ss_pred ccccCCcEEEEeeCCCCEEEE-EecCcE-EEEeCC--cceeeeecCCCCCCCCCCCCCCcEEEEEEc--CCEEEEEEeC-
Q 001003 605 YFVQGRTIAAGNLFGRRRVIQ-VFERGA-RILDGS--YMTQDLSFGPSNSESGSGSENSTVLSVSIA--DPYVLLGMSD- 677 (1192)
Q Consensus 605 F~~~~~TI~ag~l~~~~~IvQ-Vt~~~v-rli~~~--~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~--dpyvlv~~~d- 677 (1192)
|..+..-+-|+.+..+..++- -..+|+ .|++-. .+++.+.+. ..+|..++++ +.+++++++.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis-----------~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS-----------DQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc-----------cceeeEEEecccCCEEEEcCCcc
Confidence 333335566666644443333 234554 466633 356666662 3459999998 9999999876
Q ss_pred CcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEE
Q 001003 678 GSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVC 757 (1192)
Q Consensus 678 g~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 757 (1192)
|.+.+|+...+.-.++.+.. -.+++|+. | +| . ..+++.+
T Consensus 330 gQLlVweWqsEsYVlKQQgH------~~~i~~l~-Y---Sp------------------------------D-gq~iaTG 368 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGH------SDRITSLA-Y---SP------------------------------D-GQLIATG 368 (893)
T ss_pred ceEEEEEeeccceeeecccc------ccceeeEE-E---CC------------------------------C-CcEEEec
Confidence 79999988777665654432 33455542 1 11 1 1367778
Q ss_pred ecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeecCCCCC
Q 001003 758 YESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHS 837 (1192)
Q Consensus 758 ~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~g~~~~ 837 (1192)
-++|.++||..-+--|..+.+. +.. -|.-+.+...
T Consensus 369 ~eDgKVKvWn~~SgfC~vTFte----Hts------------------------------------~Vt~v~f~~~----- 403 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFCFVTFTE----HTS------------------------------------GVTAVQFTAR----- 403 (893)
T ss_pred cCCCcEEEEeccCceEEEEecc----CCC------------------------------------ceEEEEEEec-----
Confidence 8899999999766333222210 100 0111222211
Q ss_pred ccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCCCCCCCccceEEe
Q 001003 838 RPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIF 917 (1192)
Q Consensus 838 ~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~~~~~g~~~l~~f 917 (1192)
.-.|+..--||++-++.+..|. ++|-. ..+.|+..-
T Consensus 404 g~~llssSLDGtVRAwDlkRYr-----------------------------NfRTf---------------t~P~p~Qfs 439 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYR-----------------------------NFRTF---------------TSPEPIQFS 439 (893)
T ss_pred CCEEEEeecCCeEEeeeecccc-----------------------------eeeee---------------cCCCceeee
Confidence 2233444458888777664322 22211 123333322
Q ss_pred e---ccCCceEEEEcCCCCeE-EEE-e--CCceE-EEecCCCCceeE--EecccCCCCCCcEEEEE--ecCeEEEEEcCC
Q 001003 918 K---NISGHQGFFLSGSRPCW-CMV-F--RERLR-VHPQLCDGSIVA--FTVLHNVNCNHGFIYVT--SQGILKICQLPS 985 (1192)
Q Consensus 918 ~---~i~G~~gVF~~G~rP~w-i~~-~--~g~l~-~~p~~~~~~v~~--~t~F~~~~c~~Gfi~~~--~~~~LrI~~l~~ 985 (1192)
. +.+| . +.++|+.-++ |+. + .|++. +.+ --++||.+ |.|-.+ .+++ .+.++||=.+=.
T Consensus 440 cvavD~sG-e-lV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-------~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 440 CVAVDPSG-E-LVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-------LLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EEEEcCCC-C-EEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-------eEEeccccceEEEEEeec
Confidence 2 2233 2 4444555444 543 3 46655 222 24578885 555322 3433 356888876654
Q ss_pred CCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeec
Q 001003 986 GSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVP 1024 (1192)
Q Consensus 986 ~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~ 1024 (1192)
.. =.+-. +++.-..-.++++|+.+-.+|+|..-
T Consensus 510 s~-----~~vEt-l~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 510 SS-----GTVET-LEIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred cC-----ceeee-EeeccceeEEEEcCCCCeEEEEEecc
Confidence 42 25566 88888899999999999999999763
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.95 E-value=6.3e+02 Score=31.83 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=33.2
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEe
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVS 1022 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s 1022 (1192)
++.+.+.+.+++..++... -||+ | .-+|.++.+.......++++-
T Consensus 437 Llg~~ss~~~~fydW~~~~------lVrr-I--~v~~k~v~w~d~g~lVai~~d 481 (794)
T KOG0276|consen 437 LLGVRSSDFLCFYDWESGE------LVRR-I--EVTSKHVYWSDNGELVAIAGD 481 (794)
T ss_pred eEEEEeCCeEEEEEcccce------EEEE-E--eeccceeEEecCCCEEEEEec
Confidence 4455667788888888765 7888 4 567899988877677666654
No 53
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=49.24 E-value=4.4e+02 Score=30.96 Aligned_cols=117 Identities=19% Similarity=0.300 Sum_probs=71.9
Q ss_pred cCccccCCcEEEEeeCCCCEEEEEecCcEEE-EeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEE
Q 001003 603 VDYFVQGRTIAAGNLFGRRRVIQVFERGARI-LDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIR 681 (1192)
Q Consensus 603 ~gF~~~~~TI~ag~l~~~~~IvQVt~~~vrl-i~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~ 681 (1192)
..|..++.-|+-|-|.+.-+|-++-+++.+. ++..- .+ -+|-.-.. ..+.++-+..||++-
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~d-------ieWl~WHp---------~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--ED-------IEWLKWHP---------RAHILLAGSTDGSVW 173 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--Cc-------eEEEEecc---------cccEEEeecCCCcEE
Confidence 4788999999999996666677776666543 22110 00 02221001 345667789999999
Q ss_pred EEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCC
Q 001003 682 LLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESG 761 (1192)
Q Consensus 682 ~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g 761 (1192)
+|++.++.. .++ +......++|.++-.| .. -++.+.++|
T Consensus 174 mw~ip~~~~-~kv-----~~Gh~~~ct~G~f~pd----------------------------------GK-r~~tgy~dg 212 (399)
T KOG0296|consen 174 MWQIPSQAL-CKV-----MSGHNSPCTCGEFIPD----------------------------------GK-RILTGYDDG 212 (399)
T ss_pred EEECCCcce-eeE-----ecCCCCCcccccccCC----------------------------------Cc-eEEEEecCc
Confidence 999876522 221 2223445666655322 11 345566799
Q ss_pred eEEEEECCCceeeEEee
Q 001003 762 ALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 762 ~l~I~sLP~~~~v~~~~ 778 (1192)
++.+|.+-+..+.+..+
T Consensus 213 ti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKIT 229 (399)
T ss_pred eEEEEecCCCceeEEec
Confidence 99999998888877765
No 54
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=49.07 E-value=4.9e+02 Score=30.36 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=37.4
Q ss_pred CCc-EEEEEec--CeEEEEEcCCC-CccCCccceEEEecC-CCccCeEEEecCCCEEEEEE
Q 001003 966 NHG-FIYVTSQ--GILKICQLPSG-STYDNYWPVQKVIPL-KATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 966 ~~G-fi~~~~~--~~LrI~~l~~~-~~~d~~~~vrk~ipL-~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+| |+|++.. +.+.+..+++. .++ -.++. +|. |..||.++.+|+.+.++|+.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l---~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTL---TLVQT-VPTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTE---EEEEE-EEESSSSEEEEEE-TTSSEEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCce---EEEEE-EeCCCCCccEEEEeCCCCEEEEEe
Confidence 444 8999775 47889999543 333 25666 888 66799999999988887754
No 55
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=48.40 E-value=7.7e+02 Score=32.41 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=36.7
Q ss_pred cCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEE--cCCEEEEEEeCCcEEEEEecCCC
Q 001003 628 ERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDPST 689 (1192)
Q Consensus 628 ~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~ 689 (1192)
...|++++.+..-|+..+- .....|.+.+. .+.++++..-||.|.+|.++...
T Consensus 117 D~~vK~~~~~D~s~~~~lr---------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 117 DTAVKLLNLDDSSQEKVLR---------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred ceeEEEEeccccchheeec---------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 4467777766443433331 12345888887 57899999999999999987643
No 56
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=48.13 E-value=4.9e+02 Score=30.06 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=36.0
Q ss_pred CceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecceEEeee
Q 001003 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFL 1179 (1192)
Q Consensus 1108 ~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1179 (1192)
..+|++-||+ ..=.|||||=.- +.+= +..|+-.|-..--|+-++-.|.+|....-.|+||-
T Consensus 260 dgeYv~a~s~--------~aHaLYIWE~~~--GsLV-KILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 260 DGEYVCAGSA--------RAHALYIWEKSI--GSLV-KILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA 320 (405)
T ss_pred CccEEEeccc--------cceeEEEEecCC--ccee-eeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence 4689999984 344599998643 2221 11223332222234456667788888777888884
No 57
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=47.91 E-value=6.6e+02 Score=31.49 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=52.3
Q ss_pred eEEEEcCCCCeEEEEeCCceEEEecCCCC-------ceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceE
Q 001003 924 QGFFLSGSRPCWCMVFRERLRVHPQLCDG-------SIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQ 996 (1192)
Q Consensus 924 ~gVF~~G~rP~wi~~~~g~l~~~p~~~~~-------~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vr 996 (1192)
..|-.-+.+|+++++++..+|++-+.... -...++.|.-..-.+.+|+-+-+ =|+|-.+-.+ ..-|++
T Consensus 570 q~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d--~k~~WfDldl---sskPyk 644 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD--KKMCWFDLDL---SSKPYK 644 (733)
T ss_pred eEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC--CeeEEEEccc---CcchhH
Confidence 45666677887777777778877754211 12222222221122333443333 3444444333 223778
Q ss_pred EEecCCC-ccCeEEEecCCCEEEEEE
Q 001003 997 KVIPLKA-TPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 997 k~ipL~~-tp~~Iay~~~~~~y~v~~ 1021 (1192)
+ +-+.. -.|.||||+.-.+|+.+.
T Consensus 645 ~-lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 645 T-LRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred H-hhhhhhhhhhhhhccccceeeeec
Confidence 7 77766 599999999888888764
No 58
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=47.46 E-value=1.3e+02 Score=38.13 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=45.0
Q ss_pred CceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecc-eEEeeehhhheee
Q 001003 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLFSFLRSL 1186 (1192)
Q Consensus 1108 ~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 1186 (1192)
.+.|||-| ..-|+|.|||+-...--.+ +..| ++..+|+.--.-|-+||.|+.. .|++|-+--.+.+
T Consensus 588 ~Gr~LaSg---------~ed~~I~iWDl~~~~~v~~-l~~H---t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 588 CGRYLASG---------DEDGLIKIWDLANGSLVKQ-LKGH---TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEeec---------ccCCcEEEEEcCCCcchhh-hhcc---cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 35688888 5679999999976222222 2222 4444455555789999999865 9999977666655
No 59
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=46.20 E-value=4.7e+02 Score=33.49 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred cEEEEeeCCCCEEEEEecCcEEEEeCCc--ceeee--------ecCCCCCCCCCCCCCCcEEEEEE--cCCEEEEEEeCC
Q 001003 611 TIAAGNLFGRRRVIQVFERGARILDGSY--MTQDL--------SFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDG 678 (1192)
Q Consensus 611 TI~ag~l~~~~~IvQVt~~~vrli~~~~--~~q~i--------~~~~~~~e~~~~~~~~~Iv~asi--~dpyvlv~~~dg 678 (1192)
-|+||-+ .+-.-|+++|++-.+..+.. .++-| .+|. | ....|+++.+ ++-|++-+-.||
T Consensus 529 Rifaghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----G---H~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 529 RIFAGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----G---HKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred hhhcccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----C---CCCceEEEEEcCCCceEeecccCC
Confidence 4667777 45556777777655544321 12211 1220 1 2334555544 789999999999
Q ss_pred cEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEe
Q 001003 679 SIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCY 758 (1192)
Q Consensus 679 ~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 758 (1192)
.|.+|.+.......++... ...|.++++-.| ..+++++-
T Consensus 600 ~I~iWDl~~~~~v~~l~~H------t~ti~SlsFS~d-----------------------------------g~vLasgg 638 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGH------TGTIYSLSFSRD-----------------------------------GNVLASGG 638 (707)
T ss_pred cEEEEEcCCCcchhhhhcc------cCceeEEEEecC-----------------------------------CCEEEecC
Confidence 9999988664442222222 223444444211 12788888
Q ss_pred cCCeEEEEECCC
Q 001003 759 ESGALEIFDVPN 770 (1192)
Q Consensus 759 ~~g~l~I~sLP~ 770 (1192)
.++++.+|++-.
T Consensus 639 ~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 639 ADNSVRLWDLTK 650 (707)
T ss_pred CCCeEEEEEchh
Confidence 899999997643
No 60
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=45.51 E-value=2.9e+02 Score=32.93 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=37.0
Q ss_pred CcEEEEEecCCCceEeecc-cc-ccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEE
Q 001003 678 GSIRLLVGDPSTCTVSVQT-PA-AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSV 755 (1192)
Q Consensus 678 g~i~~l~~d~~~~~l~~~~-~~-~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (1192)
.+|.+|.+++.+..|.... +. .+...-.++-.+|||.+.. ...++++
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~-------------------------------~g~~ya~ 175 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPS-------------------------------TGALYAF 175 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TT-------------------------------T--EEEE
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCC-------------------------------CCcEEEE
Confidence 4699999998655454221 11 1222234567789996531 1357999
Q ss_pred EEecCCeEEEEECC
Q 001003 756 VCYESGALEIFDVP 769 (1192)
Q Consensus 756 v~~~~g~l~I~sLP 769 (1192)
+...+|.++-|.|-
T Consensus 176 v~~k~G~~~Qy~L~ 189 (381)
T PF02333_consen 176 VNGKDGRVEQYELT 189 (381)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EecCCceEEEEEEE
Confidence 99999999988873
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=45.39 E-value=2.1e+02 Score=33.93 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=50.9
Q ss_pred EEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEeeeCCCCCcee
Q 001003 1066 VRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNL 1145 (1192)
Q Consensus 1066 v~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~ 1145 (1192)
++++|-. +.++...|.-+.+--.-....|.|. ....|++-| .+-|+||||++.. ++.|.+
T Consensus 365 l~viDlR----t~eI~~~~sA~g~k~asDwtrvvfS-----pd~~YvaAG---------S~dgsv~iW~v~t--gKlE~~ 424 (459)
T KOG0288|consen 365 LKVIDLR----TKEIRQTFSAEGFKCASDWTRVVFS-----PDGSYVAAG---------SADGSVYIWSVFT--GKLEKV 424 (459)
T ss_pred eeeeecc----cccEEEEeeccccccccccceeEEC-----CCCceeeec---------cCCCcEEEEEccC--ceEEEE
Confidence 4455543 6666666654443333334444453 246899999 7899999999976 455554
Q ss_pred EeecccCcccccchhcccCceEEEeecc-eEEee
Q 001003 1146 VLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVF 1178 (1192)
Q Consensus 1146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~ 1178 (1192)
...----++..++.-+--|.=|++|... +|.+|
T Consensus 425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 3111111122223323345556666665 56665
No 62
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.48 E-value=8.2e+02 Score=31.59 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=74.4
Q ss_pred CCceEEEeCCCcCEEEEEEecCCCCC----CCCcccccccCCCcceEEEEEeccceEEEEecCceeeeecccCccccCCc
Q 001003 536 QSNYELVELPGCKGIWTVYHKSSRGH----NADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRT 611 (1192)
Q Consensus 536 ~gsL~i~eLpg~~~iWtv~~~~~~~~----~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~~T 611 (1192)
+|-+.+.+||+..=|-.+......-. |..+.-.+-.....-..||---.+++.||+-...+..++ ...+..+++-
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~-~l~YSpDgq~ 364 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRIT-SLAYSPDGQL 364 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccccee-eEEECCCCcE
Confidence 34444568887666666654321000 000000000112233455556777888888776666654 3456667677
Q ss_pred EEEEeeCCCCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCc
Q 001003 612 IAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTC 690 (1192)
Q Consensus 612 I~ag~l~~~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~ 690 (1192)
|+.|.= .+.|++++....--.+.+. .+..+...++-+.....++-.+-||+|+.|.+.....
T Consensus 365 iaTG~e----------DgKVKvWn~~SgfC~vTFt-------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 365 IATGAE----------DGKVKVWNTQSGFCFVTFT-------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred EEeccC----------CCcEEEEeccCceEEEEec-------cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 766653 3347777644311112221 1113444566666777788788899999998875543
No 63
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=41.98 E-value=2.4e+02 Score=37.20 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=45.8
Q ss_pred hhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEE-----------cCCeEEEEEEEE
Q 001003 5 AYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVT-----------AANVIEIYVVRV 73 (1192)
Q Consensus 5 ~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVva-----------k~n~LeIy~v~~ 73 (1192)
.+.+..++-.+..++.|+|++.... -+||+ +..+|-||++..
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t---------------------------~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNT---------------------------YYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCce---------------------------EEEEEEEeeccCCCCcccceEEEEEEec
Confidence 3457888889999999999976532 44544 234666676541
Q ss_pred eccCCccccCCccccccccccccccccEEEEEEEEeeeEEeEEEEE
Q 001003 74 QEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAIL 119 (1192)
Q Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~ 119 (1192)
..||++++|..+-|.+.+|..+
T Consensus 817 ------------------------~~~L~~v~e~~v~Gav~aL~~f 838 (1096)
T KOG1897|consen 817 ------------------------LNSLELVAETVVKGAVYALVEF 838 (1096)
T ss_pred ------------------------CCceeeeeeeeeccceeehhhh
Confidence 1259999999999999887643
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.21 E-value=34 Score=37.81 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=47.8
Q ss_pred ceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEee---cccCcccccchhcccCceEEEeecceEEeeeh
Q 001003 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLS---GSYGPLFSSVQIDFASHFFAICSNSFVFVFLF 1180 (1192)
Q Consensus 1109 ~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 1180 (1192)
..+|||-|+-++| +.-.|||+|.|+...++--|..+.. .-|.-+-+ +--...++|+|+--+++||--
T Consensus 21 ~nrLavAt~q~yG--l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Ws---e~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 21 ENRLAVATAQHYG--LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWS---ENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cchhheeehhhcc--cccCceEEEEecCCCCCeEEEEeeecccceeEeeec---CCCcceEEEEecCceEEEecc
Confidence 5789999999999 7889999999998544444443321 22333334 445677889999999999963
No 65
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=40.62 E-value=8.7e+02 Score=30.82 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=19.5
Q ss_pred CCCeEEECCCCcEEEEEEcCceEEEEeC
Q 001003 179 RGPLVKVDPQGRCGGVLVYGLQMIILKA 206 (1192)
Q Consensus 179 ~~~~l~VDP~~Rc~~l~~y~~~L~ilP~ 206 (1192)
+...+.+-|.|..+|+.=-.+.+-++-+
T Consensus 477 ~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 477 SISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred cceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 3467889999998888755555555544
No 66
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=40.54 E-value=64 Score=24.63 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=27.0
Q ss_pred CcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEe
Q 001003 967 HGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYF 1011 (1192)
Q Consensus 967 ~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~ 1011 (1192)
..++|++..+.=.|..++.. ....+++ ++++..|+.|+++
T Consensus 3 ~~~lyv~~~~~~~v~~id~~----~~~~~~~-i~vg~~P~~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTA----TNKVIAT-IPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEeCCCCEEEEEECC----CCeEEEE-EECCCCCceEEeC
Confidence 35678876544444445543 2347788 9999999999874
No 67
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=39.37 E-value=1e+02 Score=37.03 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=22.0
Q ss_pred cEEEEEEecCCeEEEEECCCceeeEEee
Q 001003 751 DIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
...++++..+|.+++||||+|+.+...+
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred ceEEEEEECCCcEEEEECCCchHhhccc
Confidence 3566678899999999999999988776
No 68
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.50 E-value=1.4e+02 Score=38.30 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCeEEEEeCCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCcc-CCccceEEEe
Q 001003 921 SGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTY-DNYWPVQKVI 999 (1192)
Q Consensus 921 ~G~~gVF~~G~rP~wi~~~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~-d~~~~vrk~i 999 (1192)
||..| .+..+|- |+-.-.. ...+. .+|+|++.+= -..+|+.+++-+.|++..+..+.+ .-+||.+. +
T Consensus 135 GG~ag-lvL~er~-wlgnk~~-v~l~~--~eG~I~~i~W------~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~-~ 202 (846)
T KOG2066|consen 135 GGMAG-LVLSERN-WLGNKDS-VVLSE--GEGPIHSIKW------RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQS-V 202 (846)
T ss_pred cCcce-EEEehhh-hhcCccc-eeeec--CccceEEEEe------cCcEEEEecCCCcEEEeccccceeeccCCCCCC-C
Confidence 66667 6666666 6643222 33444 4578887754 345788888889999999988765 45778877 7
Q ss_pred cCCCccCeEEEecCCCEE
Q 001003 1000 PLKATPHQITYFAEKNLY 1017 (1192)
Q Consensus 1000 pL~~tp~~Iay~~~~~~y 1017 (1192)
-....|-++.+.++.++.
T Consensus 203 R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 203 RPELFPPHLHWQDEDRLV 220 (846)
T ss_pred CcccCCCceEecCCCeEE
Confidence 777789999999887655
No 69
>PTZ00421 coronin; Provisional
Probab=38.47 E-value=7.3e+02 Score=30.78 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=23.5
Q ss_pred CCcEEEEEEc--C-CEEEEEEeCCcEEEEEecCC
Q 001003 658 NSTVLSVSIA--D-PYVLLGMSDGSIRLLVGDPS 688 (1192)
Q Consensus 658 ~~~Iv~asi~--d-pyvlv~~~dg~i~~l~~d~~ 688 (1192)
...|.+++.+ + .+++.+..||+|.+|.+...
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 3458888875 3 47777889999999988653
No 70
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.13 E-value=9.9e+02 Score=30.72 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=87.9
Q ss_pred CceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEE
Q 001003 941 ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 941 g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~ 1020 (1192)
..++.-|+ +..+.+..-.+++-=..|-.+++.-+.-..+.+++...- -.-.++ .|-.+-..+.+|-+.++.+.++
T Consensus 225 ~~l~~lp~--ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~--~~~~~~-~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 225 KKLKTLPL--YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK--CVYKQR-QSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred hhhheech--hhheeeEEEechhcCCcceEEEEecCCceEEEEecccch--hhhhhc-cCCchhhhcceeccccCceEEE
Confidence 55676674 467888887777443344444444334444445443210 112233 4433336777887777777777
Q ss_pred EeecCccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEe
Q 001003 1021 VSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTL 1100 (1192)
Q Consensus 1021 ~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L 1100 (1192)
+..++ +.|+|.. +-++... =..-||.++.|+.+
T Consensus 300 taeQn----------------------------------------l~l~d~~----~l~i~k~-ivG~ndEI~Dm~~l-- 332 (775)
T KOG0319|consen 300 TAEQN----------------------------------------LFLYDED----ELTIVKQ-IVGYNDEILDMKFL-- 332 (775)
T ss_pred Eccce----------------------------------------EEEEEcc----ccEEehh-hcCCchhheeeeec--
Confidence 65421 1123221 1122111 12347788888876
Q ss_pred ccccCCCCceEEEEEeccccCcccccCceEEEEEeee-----CCCCCceeEeecccCcccccchhcccCceEEEeecc-e
Q 001003 1101 FNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR-----NADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS-F 1174 (1192)
Q Consensus 1101 ~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~ 1174 (1192)
++-..++||-|. .+++.+|++-. -+++-|.+- ++.. --.|-+||+|+-- +
T Consensus 333 -----G~e~~~laVATN---------s~~lr~y~~~~~~c~ii~GH~e~vl------SL~~----~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 333 -----GPEESHLAVATN---------SPELRLYTLPTSYCQIIPGHTEAVL------SLDV----WSSGDLLATGSKDKS 388 (775)
T ss_pred -----CCccceEEEEeC---------CCceEEEecCCCceEEEeCchhhee------eeee----cccCcEEEEecCCce
Confidence 223679999975 45666774432 223334332 1111 1356699999875 8
Q ss_pred EEeeeh
Q 001003 1175 VFVFLF 1180 (1192)
Q Consensus 1175 ~~~~~~ 1180 (1192)
|++|-.
T Consensus 389 vilWr~ 394 (775)
T KOG0319|consen 389 VILWRL 394 (775)
T ss_pred EEEEEe
Confidence 999843
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=37.68 E-value=5.3e+02 Score=28.88 Aligned_cols=117 Identities=15% Similarity=0.289 Sum_probs=69.4
Q ss_pred ceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcCCC
Q 001003 994 PVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDR 1073 (1192)
Q Consensus 994 ~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~ 1073 (1192)
-+++ +-+...+..+-||++.+.+.+ ...++|+..|+.
T Consensus 177 ~v~s-L~~~s~VtSlEvs~dG~ilTi-----------------------------------------a~gssV~Fwdak- 213 (334)
T KOG0278|consen 177 EVQS-LEFNSPVTSLEVSQDGRILTI-----------------------------------------AYGSSVKFWDAK- 213 (334)
T ss_pred EEEE-EecCCCCcceeeccCCCEEEE-----------------------------------------ecCceeEEeccc-
Confidence 5666 777777777777776554433 134578899986
Q ss_pred CCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEeeeCCCCCceeEeecccCc
Q 001003 1074 AGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGP 1153 (1192)
Q Consensus 1074 ~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e~~~~~~~~~~ 1153 (1192)
+|+.+-+|+++-| |.+..|+ ..++++|-| ||| +.+|.||.+...+. + .+.++.+++
T Consensus 214 ---sf~~lKs~k~P~n-----V~SASL~-----P~k~~fVaG-----ged----~~~~kfDy~TgeEi-~-~~nkgh~gp 269 (334)
T KOG0278|consen 214 ---SFGLLKSYKMPCN-----VESASLH-----PKKEFFVAG-----GED----FKVYKFDYNTGEEI-G-SYNKGHFGP 269 (334)
T ss_pred ---cccceeeccCccc-----ccccccc-----CCCceEEec-----Ccc----eEEEEEeccCCcee-e-ecccCCCCc
Confidence 8899999888753 3455554 346788877 566 56788887652211 1 134566666
Q ss_pred ccccchhcccCceEEEeecc-eEEee
Q 001003 1154 LFSSVQIDFASHFFAICSNS-FVFVF 1178 (1192)
Q Consensus 1154 ~~~~~~~~~~~~~~a~~~~~-~~~~~ 1178 (1192)
+-+ |.----|-+-|+=+-- .++||
T Consensus 270 Vhc-VrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 270 VHC-VRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred eEE-EEECCCCceeeccCCCceEEEE
Confidence 655 2211223333332211 66776
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.67 E-value=7.9e+02 Score=29.46 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=83.7
Q ss_pred EEEEeecCCCCCccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCC
Q 001003 826 ELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREET 905 (1192)
Q Consensus 826 eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~ 905 (1192)
||=+..|. +..-||--+..|-+.+++++.. +.++ ++.+.-+.|
T Consensus 226 EVWfl~FS--~nGkyLAsaSkD~Taiiw~v~~--------------------------d~~~-kl~~tlvgh-------- 268 (519)
T KOG0293|consen 226 EVWFLQFS--HNGKYLASASKDSTAIIWIVVY--------------------------DVHF-KLKKTLVGH-------- 268 (519)
T ss_pred cEEEEEEc--CCCeeEeeccCCceEEEEEEec--------------------------Ccce-eeeeeeecc--------
Confidence 46666775 5677998888999999998852 1221 222221111
Q ss_pred CCCCCccceEEeeccCCceEEEEcCCCCeEEEE--eCCceE-EEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEE
Q 001003 906 PHGAPCQRITIFKNISGHQGFFLSGSRPCWCMV--FRERLR-VHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQ 982 (1192)
Q Consensus 906 ~~~~g~~~l~~f~~i~G~~gVF~~G~rP~wi~~--~~g~l~-~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~ 982 (1192)
..++....=.-..+-+.+||.--...+. .-|.++ .+|- + ..|++=.-.=||+||=+++..-.=.|+.
T Consensus 269 -----~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-~----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 269 -----SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-G----LGFSVSSCAWCPDGFRFVTGSPDRTIIM 338 (519)
T ss_pred -----cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc-C----cCCCcceeEEccCCceeEecCCCCcEEE
Confidence 2233322211112458888855544444 234333 3342 1 2233322333799988887754556666
Q ss_pred cCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeec
Q 001003 983 LPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVP 1024 (1192)
Q Consensus 983 l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~ 1024 (1192)
++-..+.-..|--.+ +| -.+-+|..++.+..++++..+
T Consensus 339 wdlDgn~~~~W~gvr-~~---~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 339 WDLDGNILGNWEGVR-DP---KVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred ecCCcchhhcccccc-cc---eeEEEEEcCCCcEEEEEeccc
Confidence 666666556787776 53 356777777788777777653
No 73
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.71 E-value=5.2e+02 Score=30.42 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=45.8
Q ss_pred CcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEE
Q 001003 750 GDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAM 829 (1192)
Q Consensus 750 ~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~ 829 (1192)
+..+|+.+-.+++++||.++...++|+..+.. .=|.++++
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd----------------------------------------nwVr~~af 342 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD----------------------------------------NWVRGVAF 342 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEeccc----------------------------------------ceeeeeEE
Confidence 34689998889999999999988887775321 12444554
Q ss_pred eecCCCCCccEEEEEecCCcEEEEEEe
Q 001003 830 QRWSAHHSRPFLFAILTDGTILCYQAY 856 (1192)
Q Consensus 830 ~~~g~~~~~p~Llv~l~dG~l~~Y~~~ 856 (1192)
.+ ..-||+--..|+.|-+|.+.
T Consensus 343 ~p-----~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 343 SP-----GGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred cC-----CCeEEEEEecCCcEEEEEec
Confidence 32 34688888899999999874
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.68 E-value=4.4e+02 Score=31.45 Aligned_cols=102 Identities=7% Similarity=0.124 Sum_probs=56.5
Q ss_pred eEEEEEeccce-EEEEecCceeeeecccCccccCCcEEEEeeCCCC--EEEEEecCcEEEEeCCcceeeeecCCCCCCCC
Q 001003 577 AYLIISLEART-MVLETADLLTEVTESVDYFVQGRTIAAGNLFGRR--RVIQVFERGARILDGSYMTQDLSFGPSNSESG 653 (1192)
Q Consensus 577 ~yLvlS~~~~T-~Vl~~g~~~eEv~~~~gF~~~~~TI~ag~l~~~~--~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~ 653 (1192)
+|+++.+.+.- .++... .-. + .|.+..+.-|.--.+.+++ .+|-+-+.++++.|-........++ |
T Consensus 367 k~vl~v~~d~~i~l~~~e-~~~---d-r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~------G 435 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNRE-ARV---D-RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF------G 435 (519)
T ss_pred cEEEEEecccceeeechh-hhh---h-hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh------c
Confidence 67777765532 333221 111 1 2445555555555664444 3555667788887754322111121 2
Q ss_pred CCCCCCcEEEEEE---cCCEEEEEEeCCcEEEEEecCCCc
Q 001003 654 SGSENSTVLSVSI---ADPYVLLGMSDGSIRLLVGDPSTC 690 (1192)
Q Consensus 654 ~~~~~~~Iv~asi---~dpyvlv~~~dg~i~~l~~d~~~~ 690 (1192)
.- .+.-|+...+ ++.||+=+.+|+.|.+|.......
T Consensus 436 hk-q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 436 HK-QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred cc-ccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 11 2334555444 468999999999999998766544
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.54 E-value=2e+02 Score=36.72 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=55.7
Q ss_pred CcEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 659 STVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 659 ~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
.-++|++++ |.|.+=++-||.|++|.+..... ....+. ..-|+|+|+..|
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~Dl------~~lITAvcy~Pd-------------------- 462 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-VDWNDL------RDLITAVCYSPD-------------------- 462 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCee-Eeehhh------hhhheeEEeccC--------------------
Confidence 348888884 88999999999999999754322 222222 334788888633
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEe
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
..+.+|++=+|..++|..-+++++.+.
T Consensus 463 ---------------Gk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 463 ---------------GKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ---------------CceEEEEEeccEEEEEEccCCeEEEee
Confidence 126778888999999999888876554
No 76
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=36.45 E-value=7.7e+02 Score=28.95 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=47.9
Q ss_pred ccEEEEE-eC--CCeEEEEEEeCCCCCEEEEeeeeeeccccccccCCcccccCCCeEEECCCCcEEEEEEc-CceEEEEe
Q 001003 130 RDSIILA-FE--DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVY-GLQMIILK 205 (1192)
Q Consensus 130 ~D~Llv~-~~--~aklsil~~d~~~~~l~t~Slh~~E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y-~~~L~ilP 205 (1192)
...|.+. .. .+.++..+||++.+.|.- -+ .. .-.| .++.++.+|++||..+..-| .+.+.+.|
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~---ln--~~----~~~g----~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTF---LN--RQ----TLPG----SPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEE---ee--cc----ccCC----CCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 4445443 33 699999999998887743 22 11 1122 23489999999999999988 56899999
Q ss_pred CccCC
Q 001003 206 ASQGG 210 (1192)
Q Consensus 206 ~~~~~ 210 (1192)
++.++
T Consensus 118 ~~~dG 122 (346)
T COG2706 118 LQADG 122 (346)
T ss_pred cccCC
Confidence 97654
No 77
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=36.06 E-value=74 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=22.0
Q ss_pred cEEEEEEcCCEEEEEEeCCcEEEE
Q 001003 660 TVLSVSIADPYVLLGMSDGSIRLL 683 (1192)
Q Consensus 660 ~Iv~asi~dpyvlv~~~dg~i~~l 683 (1192)
+|.+.+..+.+++++.+-+-+++|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 489999999999999999998887
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=35.49 E-value=7.4e+02 Score=28.52 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=55.8
Q ss_pred EEEEcCCCCeEEEE-eCCc----eEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEE--
Q 001003 925 GFFLSGSRPCWCMV-FRER----LRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQK-- 997 (1192)
Q Consensus 925 gVF~~G~rP~wi~~-~~g~----l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk-- 997 (1192)
.|.++++|-..+|- .++. ..-.|+ . -.+.|++-|.. .+||++-.-+|-.-|-.|++-.. -..+..|-
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpL-k-~Q~R~va~f~d---~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR 242 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPL-K-WQTRCVACFQD---KDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHR 242 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcc-c-ceeeEEEEEec---CCceEeeeecceEEEEecCCCCc-cCceeEEEec
Confidence 67788888844443 2211 112343 2 35778888776 45788878889999999987411 11223331
Q ss_pred ----EecCCCccCeEEEecCCCEEEEEEee
Q 001003 998 ----VIPLKATPHQITYFAEKNLYPLIVSV 1023 (1192)
Q Consensus 998 ----~ipL~~tp~~Iay~~~~~~y~v~~s~ 1023 (1192)
+-+.=+.+..|++||..++++-+-+.
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD 272 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSD 272 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCC
Confidence 01112346778999988888877654
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=33.60 E-value=2.3e+02 Score=34.55 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=83.9
Q ss_pred CcceEEEEEeccceEEEEe-cCceeeeecccCcc-----ccC--CcEEEEeeCCCC---EEEEEecCcEEEEeCCc---c
Q 001003 574 EYHAYLIISLEARTMVLET-ADLLTEVTESVDYF-----VQG--RTIAAGNLFGRR---RVIQVFERGARILDGSY---M 639 (1192)
Q Consensus 574 ~~~~yLvlS~~~~T~Vl~~-g~~~eEv~~~~gF~-----~~~--~TI~ag~l~~~~---~IvQVt~~~vrli~~~~---~ 639 (1192)
.-+.+|++|-...-.||-- |-++.|...---|+ |.+ .+|.||...-.+ .+---....+|+.+.+. +
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 3457899998888888864 55565553211122 222 355666553211 12222234577777553 2
Q ss_pred eeeeecCCCCCCCCCCCCCCcEEEEEE----cCCEEEEEEeCCcEEEEEecCCCc--eEeeccccccccCCCceeEEEee
Q 001003 640 TQDLSFGPSNSESGSGSENSTVLSVSI----ADPYVLLGMSDGSIRLLVGDPSTC--TVSVQTPAAIESSKKPVSSCTLY 713 (1192)
Q Consensus 640 ~q~i~~~~~~~e~~~~~~~~~Iv~asi----~dpyvlv~~~dg~i~~l~~d~~~~--~l~~~~~~~l~~~~~~i~~~~l~ 713 (1192)
.|-|.- .. ..+.+|...++ ..+.++-+|.||+|.+|..-.... ...+.+ +- .....|+|+.+-
T Consensus 305 ~qVik~-------k~-~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~--AH-~~g~~Itsi~FS 373 (641)
T KOG0772|consen 305 LQVIKT-------KP-AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD--AH-LPGQDITSISFS 373 (641)
T ss_pred eeEEee-------cc-CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee--cc-CCCCceeEEEec
Confidence 232221 11 12344444444 267888999999999998532111 111111 11 124578888663
Q ss_pred ccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee-eEEeecc
Q 001003 714 HDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC-VFTVDKF 780 (1192)
Q Consensus 714 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~-v~~~~~l 780 (1192)
.|- . +|+---.+++|.+|+|-.++. ++.-.+|
T Consensus 374 ~dg----------------------------------~-~LlSRg~D~tLKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 374 YDG----------------------------------N-YLLSRGFDDTLKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred ccc----------------------------------c-hhhhccCCCceeeeeccccccchhhhcCC
Confidence 221 1 222222478999999998665 4444433
No 80
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.95 E-value=4.5e+02 Score=29.60 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=47.0
Q ss_pred eeEeeceeeEEeeCcEEEEEcCCCCEEEEEEEECCceEeeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEee
Q 001003 361 SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTC 439 (1192)
Q Consensus 361 ~l~l~~~~~~~~~~~~~Ll~~~~G~L~~l~l~~dg~~V~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~ 439 (1192)
..+++++. .. -.++++|+-.+|-||.|.+.. |.....+.+ .+ .+-.+..+-.+.|+++.||+.|+-+.+.+..
T Consensus 52 g~RiE~sa-~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~--~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 52 GVRIECSA-IV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI--LE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred Cceeeeee-EE-ECCEEEEEEccCcEEEEEecc-hhheeeeee--hh-hhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 45666643 33 355699999999999998864 433332222 11 2234455667899999999988866655443
No 81
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=32.85 E-value=6.2e+02 Score=30.95 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=49.1
Q ss_pred CcEEEEEE--cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|+++.- .|-|++-...+|.|.+........ ...+.....+.. -+. +-+
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsv--Rll-~ys------------------- 173 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSV--RLL-RYS------------------- 173 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCcc------ccceecCCCCeE--EEe-ecc-------------------
Confidence 45777776 588999999999999887643311 111211111111 111 111
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeec
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDK 779 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~ 779 (1192)
....+.+.+.-++|.+.+|....+.+.|....
T Consensus 174 -----------~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~ 205 (673)
T KOG4378|consen 174 -----------PSKRFLLSIASDKGAVTLWDVQGMSPIFHASE 205 (673)
T ss_pred -----------cccceeeEeeccCCeEEEEeccCCCcccchhh
Confidence 11346777788899999999887777665543
No 82
>PLN00181 protein SPA1-RELATED; Provisional
Probab=32.65 E-value=1.3e+03 Score=30.41 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCcEEEEEEc--C-CEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 658 NSTVLSVSIA--D-PYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 658 ~~~Iv~asi~--d-pyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
...|.++++. + .+++.+..||+|.+|.+......-.+. ....+.++++..+
T Consensus 575 ~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------~~~~v~~v~~~~~------------------- 628 (793)
T PLN00181 575 EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-------TKANICCVQFPSE------------------- 628 (793)
T ss_pred CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-------cCCCeEEEEEeCC-------------------
Confidence 3458888885 3 477778889999999886543321211 1223444433110
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCc
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNF 771 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~ 771 (1192)
...+++.+..+|.+.||.+.+.
T Consensus 629 ---------------~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 629 ---------------SGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred ---------------CCCEEEEEeCCCeEEEEECCCC
Confidence 1236778888999999998653
No 83
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.79 E-value=3.5e+02 Score=31.11 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=18.7
Q ss_pred cEEEEEEecCCeEEEEECCC-cee
Q 001003 751 DIYSVVCYESGALEIFDVPN-FNC 773 (1192)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLP~-~~~ 773 (1192)
..-++.+-.+|.|+||..|+ +++
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ceEEEEeccCcEEEEEecCCcccc
Confidence 45677788999999999998 554
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=30.86 E-value=6.7e+02 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=24.1
Q ss_pred CcEEEEE-EcCCEEEEEEeCCcEEEEEecCCCc
Q 001003 659 STVLSVS-IADPYVLLGMSDGSIRLLVGDPSTC 690 (1192)
Q Consensus 659 ~~Iv~as-i~dpyvlv~~~dg~i~~l~~d~~~~ 690 (1192)
..|-|++ |++...+.+.+||+|.+|.+-....
T Consensus 328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 3466655 5788899999999999998754433
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=30.85 E-value=4.5e+02 Score=29.64 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEee
Q 001003 977 ILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSV 1023 (1192)
Q Consensus 977 ~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~ 1023 (1192)
-+-|+..+... .+-. ||-...--.||+||....++-+++.
T Consensus 254 ~IDIA~vetGd------~~~e-I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 254 FIDIAEVETGD------RVWE-IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEeEecccCC------eEEE-eeccCCceeEEecCCCceeeEEecC
Confidence 34456666555 3455 6666666789999999999988875
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=30.26 E-value=7e+02 Score=30.04 Aligned_cols=110 Identities=20% Similarity=0.252 Sum_probs=67.0
Q ss_pred EEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccC
Q 001003 662 LSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDG 741 (1192)
Q Consensus 662 v~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1192)
.++-.+..|++=+..||+..+...........++... .+-+++++.+..|
T Consensus 309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~----s~v~~ts~~fHpD-------------------------- 358 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET----SDVEYTSAAFHPD-------------------------- 358 (506)
T ss_pred eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc----ccceeEEeeEcCC--------------------------
Confidence 3344478899999888888877666554433332210 1334565544322
Q ss_pred CCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCccccccc
Q 001003 742 ADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHS 821 (1192)
Q Consensus 742 ~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1192)
..++..+..+|.+.||.|.+-.- +..|+ - +.
T Consensus 359 ---------gLifgtgt~d~~vkiwdlks~~~---~a~Fp---g----------------------------------ht 389 (506)
T KOG0289|consen 359 ---------GLIFGTGTPDGVVKIWDLKSQTN---VAKFP---G----------------------------------HT 389 (506)
T ss_pred ---------ceEEeccCCCceEEEEEcCCccc---cccCC---C----------------------------------CC
Confidence 23555688999999999865331 11221 0 11
Q ss_pred ccEEEEEEeecCCCCCccEEEEEecCCcEEEEEE
Q 001003 822 MKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 822 ~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
-.|.+| .|+ ++..||.+...||.+..+.+
T Consensus 390 ~~vk~i---~Fs--ENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 390 GPVKAI---SFS--ENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred CceeEE---Eec--cCceEEEEEecCCeEEEEEe
Confidence 235555 555 66789999888888888776
No 87
>PTZ00420 coronin; Provisional
Probab=29.69 E-value=1.3e+03 Score=29.38 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=22.7
Q ss_pred CcEEEEEEc---CCEEEEEEeCCcEEEEEecC
Q 001003 659 STVLSVSIA---DPYVLLGMSDGSIRLLVGDP 687 (1192)
Q Consensus 659 ~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~ 687 (1192)
..|.+++.+ +.+++.+..||+|.+|.+..
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t 106 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPH 106 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Confidence 458888775 35777788999999998764
No 88
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=29.60 E-value=6e+02 Score=29.09 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=50.8
Q ss_pred EEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeC-CCeEEEEEEeCCCCCEEEEeeeeeeccccccccCCcccccC
Q 001003 101 LELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFE-DAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFAR 179 (1192)
Q Consensus 101 L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~-~aklsil~~d~~~~~l~t~Slh~~E~~~~~~~~~G~~~~~~ 179 (1192)
|+++...+..|....|+. .. ..+.|+++.. +..+.+.+++ +.+.+..+.-+ ..+ ..
T Consensus 25 l~~~~~~~~~~~~~~l~~---sp-----d~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~----------~~~----~~ 81 (330)
T PRK11028 25 LTLLQVVDVPGQVQPMVI---SP-----DKRHLYVGVRPEFRVLSYRIA-DDGALTFAAES----------PLP----GS 81 (330)
T ss_pred eeeeeEEecCCCCccEEE---CC-----CCCEEEEEECCCCcEEEEEEC-CCCceEEeeee----------cCC----CC
Confidence 777777766666655532 21 3578887754 5666666665 34445321111 111 12
Q ss_pred CCeEEECCCCcEEEEEEc-CceEEEEeCc
Q 001003 180 GPLVKVDPQGRCGGVLVY-GLQMIILKAS 207 (1192)
Q Consensus 180 ~~~l~VDP~~Rc~~l~~y-~~~L~ilP~~ 207 (1192)
+..+..||+||.+.+.-| .+.+.++.+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 357899999998887754 6788888664
No 89
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=29.54 E-value=8.1e+02 Score=27.12 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.1
Q ss_pred EEEEcCCEEEEEEeCCcEEEEEe
Q 001003 663 SVSIADPYVLLGMSDGSIRLLVG 685 (1192)
Q Consensus 663 ~asi~dpyvlv~~~dg~i~~l~~ 685 (1192)
|+...+..++|++++| |.++..
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~ 23 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDL 23 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEe
Confidence 5666788999999998 777777
No 90
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=28.92 E-value=6.5e+02 Score=28.54 Aligned_cols=91 Identities=21% Similarity=0.336 Sum_probs=47.3
Q ss_pred EEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEe-----ccccCcccccCceEEEEEeeeCC
Q 001003 1065 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGT-----AYVQGEDVAARGRVLLFSTGRNA 1139 (1192)
Q Consensus 1065 sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGT-----a~~~gEd~~~rGRIlvfev~~~~ 1139 (1192)
.||+.+..+ +.+|...+. |++ -|=.+|++|... ..+ .|||.|. ++..-|| |- ||.+..-
T Consensus 38 ~vriw~~~~-~~s~~ck~v--ld~-~hkrsVRsvAws---p~g--~~La~aSFD~t~~Iw~k~~----~e---fecv~~l 101 (312)
T KOG0645|consen 38 AVRIWSTSS-GDSWTCKTV--LDD-GHKRSVRSVAWS---PHG--RYLASASFDATVVIWKKED----GE---FECVATL 101 (312)
T ss_pred eEEEEecCC-CCcEEEEEe--ccc-cchheeeeeeec---CCC--cEEEEeeccceEEEeecCC----Cc---eeEEeee
Confidence 466666543 346776533 222 244566776654 222 3887762 1111121 11 3332211
Q ss_pred CCCceeEeecccCcccccchhcccCceEEEeecc-eEEeeeh
Q 001003 1140 DNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLF 1180 (1192)
Q Consensus 1140 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~ 1180 (1192)
| =|+.+++.-+++ -.|.+||+|+-- +|.||+-
T Consensus 102 ---E-GHEnEVK~Vaws-----~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 102 ---E-GHENEVKCVAWS-----ASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred ---e-ccccceeEEEEc-----CCCCEEEEeeCCCeEEEEEe
Confidence 1 233334444555 679999999987 7888874
No 91
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.98 E-value=1.5e+03 Score=29.91 Aligned_cols=97 Identities=13% Similarity=0.235 Sum_probs=53.2
Q ss_pred CccceEEeeccCCceEEEEcCCCCeE-EEEe--CCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCC
Q 001003 910 PCQRITIFKNISGHQGFFLSGSRPCW-CMVF--RERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSG 986 (1192)
Q Consensus 910 g~~~l~~f~~i~G~~gVF~~G~rP~w-i~~~--~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~ 986 (1192)
.+..+..|+.-++. .++...||.. |+.. .+.+...-+.-+.|+.+.. .+++.|+..+ -+|-..+...
T Consensus 281 kRt~v~tfrrendR--FW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~-------~n~LfYvkd~-~i~~~d~~t~ 350 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDR--FWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVN-------GNGLFYVKDR-FIRSYDLRTQ 350 (1202)
T ss_pred cccceeeeeccCCe--EEEEEecCCcceeeeecCCceEEEEEcccCceEEEc-------CCEEEEEccc-eEEeeecccc
Confidence 34567778754442 4444455554 2332 2333333433344454442 4677888754 7776666653
Q ss_pred CccCCccceEEEecC----CCccCeEEEecCCCEEEEEE
Q 001003 987 STYDNYWPVQKVIPL----KATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 987 ~~~d~~~~vrk~ipL----~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
. ..++-+ +.- ...|+.+.|.|..++..+.+
T Consensus 351 ~----d~~v~~-lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 351 K----DTAVAS-LRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred c----cceeEe-ccCCCcccCCcceeeeccccCeEEEEe
Confidence 3 234433 222 24689999999888766644
No 92
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=27.87 E-value=95 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.0
Q ss_pred EEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEe
Q 001003 101 LELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFD 148 (1192)
Q Consensus 101 L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d 148 (1192)
++++.+..+-..|..+. .-+ ..|.|.++++++.+.+-+.|
T Consensus 2 f~~~~~k~l~~~v~~~~-w~P-------~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMS-WCP-------TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cceecccCCCCcEEEEE-ECC-------CCCEEEEEECCCeEEEEECC
Confidence 56677777777766333 332 58999999999999998875
No 93
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=27.52 E-value=96 Score=34.76 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCEEEEEEEECCceEeeEEEEec-----CCCccccceEEecCCeEEEEeeeCCeEEEEEe
Q 001003 375 DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-----NPSVLTSDITTIGNSLFFLGSRLGDSLLVQFT 438 (1192)
Q Consensus 375 ~~~Ll~~~~G~L~~l~l~~dg~~V~~l~l~~~-----~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~ 438 (1192)
+.++|+++...|..+. .+|+-++.+.|..- ...+.|..|+.-.+|.|||-|+ .| ++|+|.
T Consensus 184 ~lliLS~es~~l~~~d--~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pN-lfy~f~ 248 (248)
T PF06977_consen 184 HLLILSDESRLLLELD--RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PN-LFYRFE 248 (248)
T ss_dssp EEEEEETTTTEEEEE---TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TT-EEEEEE
T ss_pred eEEEEECCCCeEEEEC--CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-Cc-eEEEeC
Confidence 4577777777775444 56776777777652 4567799999999999999998 44 788773
No 94
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.05 E-value=9.3e+02 Score=30.96 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=43.8
Q ss_pred EEEEEE--cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 661 VLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 661 Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
|.+.++ .+-+++-+..|.++++|.++++..+.. .-.++. .....|.|+++. ..
T Consensus 368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~-~~a~~~-gH~~svgava~~--~~--------------------- 422 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL-CVAQAN-GHTNSVGAVAGS--KL--------------------- 422 (775)
T ss_pred eeeeeecccCcEEEEecCCceEEEEEecCCcchhh-hhhhhc-ccccccceeeec--cc---------------------
Confidence 556553 343666677899999999955433211 111111 134456666551 10
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
..+ +++..-.+++|.+|.||.
T Consensus 423 ----------~as-ffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 423 ----------GAS-FFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred ----------Ccc-EEEEecCCceEEEecCCC
Confidence 112 666677899999999998
No 95
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=26.59 E-value=4.8e+02 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=40.1
Q ss_pred EEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeec
Q 001003 753 YSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRW 832 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~ 832 (1192)
+++++.-+|+|.||.+....+.+.+.+ +.-|.++..
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~h-----------------------------------------e~~V~~l~w--- 335 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICEH-----------------------------------------EDGVTKLKW--- 335 (399)
T ss_pred hhhcccccceEEEEecccchhheeccC-----------------------------------------CCceEEEEE---
Confidence 677888899999999988776655531 112444543
Q ss_pred CCCCCccEEEEEecCCcEEEEEE
Q 001003 833 SAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 833 g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
...+||+..-.||.|-.|.+
T Consensus 336 ---~~t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 336 ---LNTDYLLTACANGKVRQWDA 355 (399)
T ss_pred ---cCcchheeeccCceEEeeec
Confidence 23799999999998876664
No 96
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.50 E-value=1.3e+03 Score=28.15 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=48.2
Q ss_pred CcEEEEEE--cCCEEEEEEeCCcEEEEEecCCCce--EeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 659 STVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCT--VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 659 ~~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~--l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
..|+++++ .+.+++.+..||.|++|.......+ -.+.... ... .+.+++.- .
T Consensus 289 ~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---~~~-~~~~~~fs--p------------------ 344 (456)
T KOG0266|consen 289 DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE---NSA-PVTSVQFS--P------------------ 344 (456)
T ss_pred CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC---CCC-ceeEEEEC--C------------------
Confidence 34777777 4668888888999999988765421 1111111 111 34444331 0
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
...++++...++.+.+|.+.....+
T Consensus 345 ---------------~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 345 ---------------NGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred ---------------CCcEEEEecCCCeEEEEEccCCcce
Confidence 1237888888999999999875554
No 97
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.39 E-value=1.2e+03 Score=27.66 Aligned_cols=139 Identities=10% Similarity=0.067 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCeEEEEeCCceEEEecCCCCcee--EEecccC------CC---C--CCcEEEEEecCeEEEEEcCCCC
Q 001003 921 SGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIV--AFTVLHN------VN---C--NHGFIYVTSQGILKICQLPSGS 987 (1192)
Q Consensus 921 ~G~~gVF~~G~rP~wi~~~~g~l~~~p~~~~~~v~--~~t~F~~------~~---c--~~Gfi~~~~~~~LrI~~l~~~~ 987 (1192)
.+...+|++++.-.++.+-.|++...-+-..+.+. +.--|+. .+ . ....+|++.+|.+.+..+....
T Consensus 147 p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~ 226 (352)
T TIGR02658 147 PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGD 226 (352)
T ss_pred CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCc
Confidence 55678888888887777766666553322222211 1111332 11 1 2467788888888888764432
Q ss_pred -ccCCccceEEEecC---CCccCe---EEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccccCcc
Q 001003 988 -TYDNYWPVQKVIPL---KATPHQ---ITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYT 1060 (1192)
Q Consensus 988 -~~d~~~~vrk~ipL---~~tp~~---Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~ 1060 (1192)
..-..|..-. ..- +-.|-. |++|++.+.+.|+.... .+..|.
T Consensus 227 ~~~~~~~~~~~-~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~-------------~~~thk----------------- 275 (352)
T TIGR02658 227 AKFLPAIEAFT-EAEKADGWRPGGWQQVAYHRARDRIYLLADQR-------------AKWTHK----------------- 275 (352)
T ss_pred ceecceeeecc-ccccccccCCCcceeEEEcCCCCEEEEEecCC-------------cccccc-----------------
Confidence 1112233211 110 001222 99999888776643221 011111
Q ss_pred eeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEE
Q 001003 1061 VEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVR 1096 (1192)
Q Consensus 1061 ~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~ 1096 (1192)
.....|-++|.. +++++..+.+.. .+..|.
T Consensus 276 ~~~~~V~ViD~~----t~kvi~~i~vG~--~~~~ia 305 (352)
T TIGR02658 276 TASRFLFVVDAK----TGKRLRKIELGH--EIDSIN 305 (352)
T ss_pred CCCCEEEEEECC----CCeEEEEEeCCC--ceeeEE
Confidence 012257799985 999999999865 444443
No 98
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.31 E-value=1.3e+03 Score=28.12 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=47.8
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++++ +..++-+..|++|++|......++-.+. .....|+++++-.|
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~------~hs~~is~~~f~~d--------------------- 299 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK------GHSDGISGLAFSPD--------------------- 299 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee------ccCCceEEEEECCC---------------------
Confidence 447777774 3577779999999999987643422222 23557777755322
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
.. +++..-.+|.++||++-....
T Consensus 300 -------------~~-~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 300 -------------GN-LLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -------------CC-EEEEcCCCccEEEEECCCCce
Confidence 12 344444489999999987664
No 99
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=25.27 E-value=5.3e+02 Score=30.26 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=41.3
Q ss_pred EEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCcee
Q 001003 631 ARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVS 708 (1192)
Q Consensus 631 vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~ 708 (1192)
+|+.|.....+...+. | ....|..+-+. ||+|+-+.-|++|++|.+-...... .+......+.
T Consensus 259 ~RvWDiRtr~~V~~l~------G---H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~------tlt~hkksvr 323 (460)
T KOG0285|consen 259 IRVWDIRTRASVHVLS------G---HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI------TLTHHKKSVR 323 (460)
T ss_pred EEEeeecccceEEEec------C---CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE------eeecccceee
Confidence 5666655444433332 1 22336666665 9999999999999999876543322 2223355667
Q ss_pred EEEee
Q 001003 709 SCTLY 713 (1192)
Q Consensus 709 ~~~l~ 713 (1192)
|+|+.
T Consensus 324 al~lh 328 (460)
T KOG0285|consen 324 ALCLH 328 (460)
T ss_pred EEecC
Confidence 77765
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=24.89 E-value=9.6e+02 Score=27.65 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=34.6
Q ss_pred cEEEEEEc-CC-EEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCC
Q 001003 660 TVLSVSIA-DP-YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKG 717 (1192)
Q Consensus 660 ~Iv~asi~-dp-yvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~ 717 (1192)
.+.|.++. |. .++-+..||.|.+|.+....|+-.... .....|+|+++..|.+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-----AHtkGvt~l~FSrD~S 319 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-----AHTKGVTCLSFSRDNS 319 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-----hhccCeeEEEEccCcc
Confidence 36777664 33 455577899999999887766322111 1355688888877765
No 101
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=24.42 E-value=1.1e+03 Score=26.94 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=69.2
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
.-+..+.+. +..++=+=.||.+.++.+++..+...+.. ...|.++|+- |
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-------~~~v~sl~fs----p------------------ 243 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-------FDIVNSLCFS----P------------------ 243 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-------CCeEeeEEec----C------------------
Confidence 345555554 22333355688999999887665333221 2346666552 1
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcc
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRK 816 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1192)
..+|+..++.. ++.||.|.+-.+++.-+ ++..-. + .+
T Consensus 244 -------------nrywL~~at~~-sIkIwdl~~~~~v~~l~-----~d~~g~---------s---------------~~ 280 (315)
T KOG0279|consen 244 -------------NRYWLCAATAT-SIKIWDLESKAVVEELK-----LDGIGP---------S---------------SK 280 (315)
T ss_pred -------------CceeEeeccCC-ceEEEeccchhhhhhcc-----cccccc---------c---------------cc
Confidence 24788888865 48999998866664443 111000 0 00
Q ss_pred cccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEEe
Q 001003 817 ENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1192)
Q Consensus 817 ~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~ 856 (1192)
.-.+..+.+.-. ....+||++..||-+-.+++-
T Consensus 281 ----~~~~~clslaws---~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 281 ----AGDPICLSLAWS---ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----cCCcEEEEEEEc---CCCcEEEeeecCCcEEEEEee
Confidence 012344555433 457899999999999988863
No 102
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.79 E-value=1.6e+03 Score=28.56 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=60.2
Q ss_pred CcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEE--cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCc
Q 001003 629 RGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKP 706 (1192)
Q Consensus 629 ~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~ 706 (1192)
..||++..+..- .+..|+- ...-|.+..+ ..||++-..+|-+|.+|.-+.+=. ..+.+....+-
T Consensus 77 ~~IrVfnynt~e-kV~~FeA--------H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa-----~~qtfeGH~Hy 142 (794)
T KOG0276|consen 77 MQIRVFNYNTGE-KVKTFEA--------HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA-----CEQTFEGHEHY 142 (794)
T ss_pred ceEEEEecccce-eeEEeec--------cccceeeeeecCCCCeEEecCCccEEEEeeccCcee-----eeeEEcCcceE
Confidence 358888766421 1222321 2234777777 699999999999999997664311 11223334667
Q ss_pred eeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEee
Q 001003 707 VSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 707 i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
|.++|++.. ..+.+.- +.-++++.||+|-+-.+.|+-+
T Consensus 143 VMqv~fnPk---------------------------------D~ntFaS-~sLDrTVKVWslgs~~~nfTl~ 180 (794)
T KOG0276|consen 143 VMQVAFNPK---------------------------------DPNTFAS-ASLDRTVKVWSLGSPHPNFTLE 180 (794)
T ss_pred EEEEEecCC---------------------------------Cccceee-eeccccEEEEEcCCCCCceeee
Confidence 777776521 0122322 3337899999997655555544
No 103
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.87 E-value=4.6e+02 Score=31.16 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=0.0
Q ss_pred EEEEEec-CeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCcccccccccccccccccccccc
Q 001003 969 FIYVTSQ-GILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1192)
Q Consensus 969 fi~~~~~-~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~ 1047 (1192)
++|+.+. |.+.+-.+.... .+++ |+.|..|+.|+++++.+..++.+..+.
T Consensus 50 ~~yv~~rdg~vsviD~~~~~------~v~~-i~~G~~~~~i~~s~DG~~~~v~n~~~~---------------------- 100 (369)
T PF02239_consen 50 YLYVANRDGTVSVIDLATGK------VVAT-IKVGGNPRGIAVSPDGKYVYVANYEPG---------------------- 100 (369)
T ss_dssp EEEEEETTSEEEEEETTSSS------EEEE-EE-SSEEEEEEE--TTTEEEEEEEETT----------------------
T ss_pred EEEEEcCCCeEEEEECCccc------EEEE-EecCCCcceEEEcCCCCEEEEEecCCC----------------------
Q ss_pred CCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEE
Q 001003 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIP 1085 (1192)
Q Consensus 1048 ~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~e 1085 (1192)
.+.++|.. |++.+..+.
T Consensus 101 -----------------~v~v~D~~----tle~v~~I~ 117 (369)
T PF02239_consen 101 -----------------TVSVIDAE----TLEPVKTIP 117 (369)
T ss_dssp -----------------EEEEEETT----T--EEEEEE
T ss_pred -----------------ceeEeccc----cccceeecc
No 104
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.84 E-value=3e+02 Score=33.33 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=53.2
Q ss_pred EEEEe-CCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecC
Q 001003 935 WCMVF-RERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAE 1013 (1192)
Q Consensus 935 wi~~~-~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~ 1013 (1192)
|=++. ++-+|.+. .-..+|..++. + +|...|+-..=+..+++--....+ -..+ ..+++.|--+-+||+
T Consensus 242 W~vy~~~~~lrtf~-gH~k~Vrd~~~-s--~~g~~fLS~sfD~~lKlwDtETG~------~~~~-f~~~~~~~cvkf~pd 310 (503)
T KOG0282|consen 242 WNVYDDRRCLRTFK-GHRKPVRDASF-N--NCGTSFLSASFDRFLKLWDTETGQ------VLSR-FHLDKVPTCVKFHPD 310 (503)
T ss_pred EEEecCcceehhhh-cchhhhhhhhc-c--ccCCeeeeeecceeeeeeccccce------EEEE-EecCCCceeeecCCC
Confidence 43444 44444333 22245555443 3 377777777667788887777665 5577 999999999999999
Q ss_pred C-CEEEEEEee
Q 001003 1014 K-NLYPLIVSV 1023 (1192)
Q Consensus 1014 ~-~~y~v~~s~ 1023 (1192)
. ++|.+..+.
T Consensus 311 ~~n~fl~G~sd 321 (503)
T KOG0282|consen 311 NQNIFLVGGSD 321 (503)
T ss_pred CCcEEEEecCC
Confidence 8 888888775
No 105
>PTZ00421 coronin; Provisional
Probab=22.40 E-value=1.5e+03 Score=27.96 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=47.5
Q ss_pred CcEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 659 STVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 659 ~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
..|.+++.. +.+++.+..|++|.+|.+........+. .....|.++++..|
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~------~h~~~V~sla~spd-------------------- 179 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK------CHSDQITSLEWNLD-------------------- 179 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc------CCCCceEEEEEECC--------------------
Confidence 346666664 2467778889999999887543322211 12345666544211
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
.. +++.+..+|.++||.+-+.+.+..
T Consensus 180 --------------G~-lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 180 --------------GS-LLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred --------------CC-EEEEecCCCEEEEEECCCCcEEEE
Confidence 12 566677799999999877665443
No 106
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=22.28 E-value=2.1e+02 Score=28.91 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.1
Q ss_pred EEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCC
Q 001003 103 LVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIH 152 (1192)
Q Consensus 103 lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~ 152 (1192)
-+...++.-.|++|+.=|+...+ .+|.|+|+|.. .||-||-+.+
T Consensus 40 ~i~~LNin~~italaaG~l~~~~---~~D~LliGt~t---~llaYDV~~N 83 (136)
T PF14781_consen 40 DISFLNINQEITALAAGRLKPDD---GRDCLLIGTQT---SLLAYDVENN 83 (136)
T ss_pred ceeEEECCCceEEEEEEecCCCC---CcCEEEEeccc---eEEEEEcccC
Confidence 35556777789999988886433 79999999985 6888997655
No 107
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=22.03 E-value=6.5e+02 Score=28.24 Aligned_cols=92 Identities=20% Similarity=0.102 Sum_probs=54.9
Q ss_pred EEEEcCCCCeEEEE-e-C-CceEEEecCCCCceeEEecccCCCCCCcEEEEEe--cCeEEEEEcCCCCccCCccceEEEe
Q 001003 925 GFFLSGSRPCWCMV-F-R-ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTS--QGILKICQLPSGSTYDNYWPVQKVI 999 (1192)
Q Consensus 925 gVF~~G~rP~wi~~-~-~-g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~--~~~LrI~~l~~~~~~d~~~~vrk~i 999 (1192)
..|+..+.|..|+. + + ..++-.|+...+....++- ..+|.+++.+ .+.|.+.+++.....-..=.+++ +
T Consensus 35 tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y-----~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~-~ 108 (248)
T PF06977_consen 35 TLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITY-----LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQK-I 108 (248)
T ss_dssp EEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE------STTEEEEEETTTTEEEEEEE----TT--EEEEEE-E
T ss_pred eEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEE-----ECCCEEEEEEcCCCcEEEEEEeccccccchhhceE-E
Confidence 48888888888875 3 4 3456666666666777766 4556666666 47899999976543211223566 7
Q ss_pred cCCCc------cCeEEEecCCCEEEEEEe
Q 001003 1000 PLKAT------PHQITYFAEKNLYPLIVS 1022 (1192)
Q Consensus 1000 pL~~t------p~~Iay~~~~~~y~v~~s 1022 (1192)
+|+-. .--|||.+..+.+.++.-
T Consensus 109 ~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 109 SLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp E---S---SS--EEEEEETTTTEEEEEEE
T ss_pred ecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 77765 456999999998888754
No 108
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.99 E-value=8.5e+02 Score=27.84 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=59.2
Q ss_pred EEEEcCCCCeEEEEeCCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCC-
Q 001003 925 GFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKA- 1003 (1192)
Q Consensus 925 gVF~~G~rP~wi~~~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~- 1003 (1192)
...+.|+.| ...+...++|+.+ .-.||.-.--|+|-+.++.+++=-|+.|++..- -+.+ +||+.
T Consensus 39 a~~A~gs~p----a~~~s~~~fpvp~-----G~ap~dvapapdG~VWft~qg~gaiGhLdP~tG-----ev~~-ypLg~G 103 (353)
T COG4257 39 ATPAAGSSP----APDGSSAEFPVPN-----GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATG-----EVET-YPLGSG 103 (353)
T ss_pred cchhhcCCC----CCCCccceeccCC-----CCCccccccCCCCceEEecCccccceecCCCCC-----ceEE-EecCCC
Confidence 344556666 3456667777644 244555555899999999999999999999763 6777 99976
Q ss_pred -ccCeEEEecCCCEEEE
Q 001003 1004 -TPHQITYFAEKNLYPL 1019 (1192)
Q Consensus 1004 -tp~~Iay~~~~~~y~v 1019 (1192)
.||.|.--|+....+.
T Consensus 104 a~Phgiv~gpdg~~Wit 120 (353)
T COG4257 104 ASPHGIVVGPDGSAWIT 120 (353)
T ss_pred CCCceEEECCCCCeeEe
Confidence 7999999988777655
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.47 E-value=8.5e+02 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.8
Q ss_pred EEEEEecCCeEEEEECCCceeeEE
Q 001003 753 YSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
|++.+-.+|++.||++-.-++.+.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEE
Confidence 777788899999999977555433
No 110
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.20 E-value=1.9e+03 Score=28.53 Aligned_cols=113 Identities=13% Similarity=0.257 Sum_probs=63.4
Q ss_pred eeEEecCCCCeEEEEecceEEEEeCCCceeEeccccccccCCCccCcCCCceeEeeceeeE----EeeCcEEEEEcCCCC
Q 001003 310 KLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHAT----WLQNDVALLSTKTGD 385 (1192)
Q Consensus 310 ~LipvP~p~GGvLVig~n~I~y~d~~~~~~~a~N~~~~~~~~~~~~~~~~~~l~l~~~~~~----~~~~~~~Ll~~~~G~ 385 (1192)
-++|.++-..-++.+..|.+-|+...... ...+.+.+..++.+-|.+.. -++++..++....|+
T Consensus 327 dv~~~~~~~~~lv~l~nNtv~~ysl~~s~------------~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~ 394 (888)
T KOG0306|consen 327 DVTPSGGTENTLVLLANNTVEWYSLENSG------------KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE 394 (888)
T ss_pred EEEecCCcceeEEEeecCceEEEEeccCC------------CCCccccccceeeeccchhheeEEEeecCceeeeecCCC
Confidence 35555544433334667777777654311 00122223334444443221 246677788888888
Q ss_pred EEEEEEEECCceEeeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEee
Q 001003 386 LVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTC 439 (1192)
Q Consensus 386 L~~l~l~~dg~~V~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~ 439 (1192)
=+++-.....+.++.|... ..++++++. ++.++-+|-..|.=++|-+.+
T Consensus 395 SikiWn~~t~kciRTi~~~----y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCG----YILASKFVP-GDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred cEEEEEccCcceeEEeccc----cEEEEEecC-CCceEEEeccCCceEEEEeeh
Confidence 7777665445555545443 234555544 677888888888888887765
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=21.08 E-value=1.3e+03 Score=26.74 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=44.6
Q ss_pred ecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCc---cceEEEecCC---CccCeEEEecCCCEEEEE
Q 001003 947 PQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNY---WPVQKVIPLK---ATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 947 p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~---~~vrk~ipL~---~tp~~Iay~~~~~~y~v~ 1020 (1192)
.+.+.........|+|. ..-.+-++.+|..||-..+=..+.+.. +-.-. +||. ..|-|++.+|+.+.+++.
T Consensus 273 ~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred eeccchhheeeeeeCCC--cceeEEEecCCcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcEEEee
Confidence 33344444444556553 234588888999999887654433211 12223 4553 358999999999999985
Q ss_pred E
Q 001003 1021 V 1021 (1192)
Q Consensus 1021 ~ 1021 (1192)
.
T Consensus 350 ~ 350 (420)
T KOG2096|consen 350 F 350 (420)
T ss_pred c
Confidence 3
No 112
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=20.80 E-value=2.7e+02 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred CcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEeeeCCC
Q 001003 1089 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNAD 1140 (1192)
Q Consensus 1089 ~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~ 1140 (1192)
|+.++|+..-.|+ ....++.|+|||.. .|+.|+|.++.+
T Consensus 47 n~~italaaG~l~---~~~~~D~LliGt~t----------~llaYDV~~N~d 85 (136)
T PF14781_consen 47 NQEITALAAGRLK---PDDGRDCLLIGTQT----------SLLAYDVENNSD 85 (136)
T ss_pred CCceEEEEEEecC---CCCCcCEEEEeccc----------eEEEEEcccCch
Confidence 6789999999997 33457999999864 499999987544
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.77 E-value=6.5e+02 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEEecCCeEEEEECCCceeeEEe
Q 001003 752 IYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 752 ~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
-+||-|..+|.+.||.|-+..+|=+.
T Consensus 522 kvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 522 KVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred ceeeeeccCCcEEEEEcccceeeecc
Confidence 38999999999999999886665433
No 114
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=20.38 E-value=7.1e+02 Score=30.97 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccc
Q 001003 977 ILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLH 1056 (1192)
Q Consensus 977 ~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~ 1056 (1192)
.+-||+|..- ..|+-. ++|+++.-..|+.|..+-|+|+..... .+ .
T Consensus 426 n~eIfrireK-----dIpve~-velke~vi~FaWEP~gdkF~vi~g~~~---k~-----------------------t-- 471 (698)
T KOG2314|consen 426 NLEIFRIREK-----DIPVEV-VELKESVIAFAWEPHGDKFAVISGNTV---KN-----------------------T-- 471 (698)
T ss_pred eEEEEEeecc-----CCCcee-eecchheeeeeeccCCCeEEEEEcccc---cc-----------------------c--
Confidence 7889999975 479999 999999999999999999999864310 00 0
Q ss_pred cCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEEee
Q 001003 1057 RTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTG 1136 (1192)
Q Consensus 1057 ~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfev~ 1136 (1192)
..-|.++- . +..|..+-.++ . -+ +-.|.. .....|+||++-- ..+|.+..+|..
T Consensus 472 ----vsfY~~e~-~----~~~~~lVk~~d--k-~~---~N~vfw-----sPkG~fvvva~l~------s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 472 ----VSFYAVET-N----IKKPSLVKELD--K-KF---ANTVFW-----SPKGRFVVVAALV------SRRGDLEFYDTD 525 (698)
T ss_pred ----eeEEEeec-C----CCchhhhhhhc--c-cc---cceEEE-----cCCCcEEEEEEec------ccccceEEEecc
Confidence 01111111 1 13555543332 1 11 122322 2234699998732 378999999887
Q ss_pred e----CCCCCceeEeecccCcccccchhcccCceEEEeecc
Q 001003 1137 R----NADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS 1173 (1192)
Q Consensus 1137 ~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1173 (1192)
- ....||-- +++-+.=|--|+-.++|+.+
T Consensus 526 ~a~~k~~~~~eh~--------~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 526 YADLKDTASPEHF--------AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hhhhhhccCcccc--------ccccceECCCCCEEEEeeeh
Confidence 2 33333321 23344468889999999988
No 115
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.20 E-value=1.9e+03 Score=29.78 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEEEEeccceEEEEe-cCceeeeecccCcc-ccCCcEEEEeeCCCCEEEEEecCc-EEEEeCCcceeeeecCCCCCCCCC
Q 001003 578 YLIISLEARTMVLET-ADLLTEVTESVDYF-VQGRTIAAGNLFGRRRVIQVFERG-ARILDGSYMTQDLSFGPSNSESGS 654 (1192)
Q Consensus 578 yLvlS~~~~T~Vl~~-g~~~eEv~~~~gF~-~~~~TI~ag~l~~~~~IvQVt~~~-vrli~~~~~~q~i~~~~~~~e~~~ 654 (1192)
||+++-. +++.++ +-+-|.+-....+. ....|-.-+.+-.++.|+==+..| ||+||.....++-.+. -|..
T Consensus 1179 ~Ll~tGd--~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~----~~R~ 1252 (1387)
T KOG1517|consen 1179 HLLVTGD--VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC----VYRE 1252 (1387)
T ss_pred eEEecCC--eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce----eecc
Q ss_pred CCCCCcEEEEEEcC-CEE-EE-EEeCCcEEEEEe--cCCCceEeeccccccccCCCceeEEEeeccCCCCCccccccccc
Q 001003 655 GSENSTVLSVSIAD-PYV-LL-GMSDGSIRLLVG--DPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDA 729 (1192)
Q Consensus 655 ~~~~~~Iv~asi~d-pyv-lv-~~~dg~i~~l~~--d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~ 729 (1192)
-.....|+++++.. ++. +| ++.||.|.+|.+ .+....+.+..+-.. .+.++|+.+..+.
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y---Gs~lTal~VH~ha------------- 1316 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY---GSALTALTVHEHA------------- 1316 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc---CccceeeeeccCC-------------
Q ss_pred ccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee-eEEeeccccccceecccccccccccccccccCCCc
Q 001003 730 WLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC-VFTVDKFVSGRTHIVDTYMREALKDSETEINSSSE 808 (1192)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~-v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 808 (1192)
.+++.+.. +.+.||++.--.+ ++.....-+++++
T Consensus 1317 ----------------------piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~---------------------- 1351 (1387)
T KOG1517|consen 1317 ----------------------PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRI---------------------- 1351 (1387)
T ss_pred ----------------------CeeeecCc-ceEEEEecChhhhcccccCcccccCcC----------------------
Q ss_pred cCCCCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEE
Q 001003 809 EGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQ 854 (1192)
Q Consensus 809 ~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~ 854 (1192)
..+..+-+++. +++|-++-.|..+-+|.
T Consensus 1352 -------------gs~scL~FHP~-----~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1352 -------------GSVSCLAFHPH-----RLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred -------------CCcceeeecch-----hHhhhhccCCceEEEee
No 116
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.11 E-value=5.3e+02 Score=29.62 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=57.0
Q ss_pred eEEEEcCCCCeEEEE--eCCc-eEEEecCCCCceeEEecccCCCCCCc-EEEEEe-cCeEEEEEcCCCCccCCccceEEE
Q 001003 924 QGFFLSGSRPCWCMV--FRER-LRVHPQLCDGSIVAFTVLHNVNCNHG-FIYVTS-QGILKICQLPSGSTYDNYWPVQKV 998 (1192)
Q Consensus 924 ~gVF~~G~rP~wi~~--~~g~-l~~~p~~~~~~v~~~t~F~~~~c~~G-fi~~~~-~~~LrI~~l~~~~~~d~~~~vrk~ 998 (1192)
+..|+.+.+|.-|+. .+|. ++-.|+.......++.= ..+| |+..+. +..|.+.+++..... -..-..+
T Consensus 98 rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey-----ig~n~fvi~dER~~~l~~~~vd~~t~~-~~~~~~~- 170 (316)
T COG3204 98 RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY-----IGGNQFVIVDERDRALYLFTVDADTTV-ISAKVQK- 170 (316)
T ss_pred ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE-----ecCCEEEEEehhcceEEEEEEcCCccE-EeccceE-
Confidence 579999999988865 3444 55556543222111111 1334 333333 268888888887432 1223347
Q ss_pred ecCCCccC------eEEEecCCCEEEEEE
Q 001003 999 IPLKATPH------QITYFAEKNLYPLIV 1021 (1192)
Q Consensus 999 ipL~~tp~------~Iay~~~~~~y~v~~ 1021 (1192)
|||+.+++ -+||.|..+.+.++-
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEE
Confidence 99999988 699999999988864
Done!