Query 001003
Match_columns 1192
No_of_seqs 196 out of 586
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 2E-122 5E-127 1215.0 99.0 856 1-1183 19-914 (1158)
2 3v7d_B Cell division control p 97.7 0.044 1.5E-06 64.2 33.4 111 661-856 125-235 (464)
3 1r5m_A SIR4-interacting protei 97.3 0.29 1E-05 55.5 33.6 142 969-1180 262-423 (425)
4 1sq9_A Antiviral protein SKI8; 97.1 0.6 2E-05 52.8 36.1 84 658-772 16-102 (397)
5 3zwl_B Eukaryotic translation 97.0 0.66 2.2E-05 51.4 39.7 114 969-1137 233-346 (369)
6 3mkq_A Coatomer beta'-subunit; 96.9 1.6 5.3E-05 54.9 39.3 111 659-855 14-126 (814)
7 3mmy_A MRNA export factor; mRN 96.8 0.78 2.7E-05 50.8 30.5 78 658-774 39-121 (368)
8 4aez_A CDC20, WD repeat-contai 96.6 1.6 5.5E-05 49.9 35.6 40 975-1021 283-322 (401)
9 1r5m_A SIR4-interacting protei 96.5 1.6 5.6E-05 49.2 36.0 78 659-778 109-188 (425)
10 3i2n_A WD repeat-containing pr 96.3 1.9 6.5E-05 47.5 32.3 42 973-1021 187-231 (357)
11 1gxr_A ESG1, transducin-like e 96.1 2.1 7.1E-05 46.6 33.5 41 973-1020 243-283 (337)
12 2pm9_A Protein WEB1, protein t 96.1 1.4 4.6E-05 50.1 26.8 18 753-770 81-98 (416)
13 1p22_A F-BOX/WD-repeat protein 96.1 3 0.0001 48.1 33.4 73 659-774 134-206 (435)
14 3ei3_B DNA damage-binding prot 96.1 2.6 9E-05 47.4 31.8 74 659-770 74-150 (383)
15 3vl1_A 26S proteasome regulato 96.0 3 0.0001 47.3 34.2 40 973-1019 266-307 (420)
16 2ovr_B FBW7, F-BOX/WD repeat p 96.0 3.4 0.00012 47.7 43.8 76 658-776 159-234 (445)
17 3sfz_A APAF-1, apoptotic pepti 95.9 7.8 0.00027 51.3 48.0 100 620-770 810-913 (1249)
18 1sq9_A Antiviral protein SKI8; 95.7 3.6 0.00012 46.2 32.9 49 966-1021 196-252 (397)
19 4a11_B DNA excision repair pro 95.6 3.8 0.00013 45.9 35.3 121 658-855 43-173 (408)
20 3k26_A Polycomb protein EED; W 95.6 3.5 0.00012 45.4 35.4 86 658-775 18-109 (366)
21 2ymu_A WD-40 repeat protein; u 95.6 5.6 0.00019 47.3 40.9 70 659-770 263-334 (577)
22 4gqb_B Methylosome protein 50; 95.4 4.4 0.00015 45.6 27.1 79 660-775 84-163 (344)
23 4aow_A Guanine nucleotide-bind 95.4 4 0.00014 44.5 36.0 80 659-774 39-121 (340)
24 4ery_A WD repeat-containing pr 95.3 4.2 0.00015 44.2 36.9 76 659-775 24-101 (312)
25 3dm0_A Maltose-binding peripla 95.1 9.2 0.00031 47.2 35.5 40 973-1019 580-619 (694)
26 2ovr_B FBW7, F-BOX/WD repeat p 95.0 6.9 0.00024 45.1 35.4 103 620-776 169-274 (445)
27 3dw8_B Serine/threonine-protei 94.8 5.1 0.00017 45.8 25.9 31 658-688 28-60 (447)
28 1gxr_A ESG1, transducin-like e 94.8 5.7 0.00019 43.0 35.0 79 658-775 97-177 (337)
29 3zwl_B Eukaryotic translation 94.8 6.1 0.00021 43.3 36.2 149 969-1181 190-345 (369)
30 4e54_B DNA damage-binding prot 94.8 3.3 0.00011 47.9 24.2 74 659-770 120-196 (435)
31 3sfz_A APAF-1, apoptotic pepti 94.3 20 0.00067 47.4 44.5 113 659-855 616-730 (1249)
32 1vyh_C Platelet-activating fac 94.3 9.6 0.00033 43.6 35.5 75 659-774 109-185 (410)
33 2ynn_A Coatomer subunit beta'; 94.2 7.7 0.00026 42.2 35.8 111 659-855 14-126 (304)
34 2ymu_A WD-40 repeat protein; u 94.0 13 0.00044 44.2 38.9 70 659-770 222-293 (577)
35 4gga_A P55CDC, cell division c 93.9 11 0.00039 43.0 34.0 96 975-1137 300-395 (420)
36 3mmy_A MRNA export factor; mRN 93.7 9.9 0.00034 41.6 27.4 48 969-1023 288-336 (368)
37 4g56_B MGC81050 protein; prote 93.3 12 0.00043 41.8 24.7 79 660-775 96-175 (357)
38 2aq5_A Coronin-1A; WD40 repeat 93.3 13 0.00046 41.9 26.9 52 966-1021 230-286 (402)
39 3frx_A Guanine nucleotide-bind 93.1 12 0.00042 40.9 38.3 42 973-1021 215-256 (319)
40 3mkq_A Coatomer beta'-subunit; 92.8 25 0.00084 43.7 44.8 76 659-773 98-175 (814)
41 3bws_A Protein LP49; two-domai 92.8 16 0.00054 41.4 36.7 117 966-1136 312-431 (433)
42 1l0q_A Surface layer protein; 92.7 15 0.00052 41.0 34.0 49 966-1021 167-218 (391)
43 1pgu_A Actin interacting prote 92.6 21 0.00072 42.4 35.3 43 970-1020 223-270 (615)
44 3bws_A Protein LP49; two-domai 92.2 19 0.00063 40.9 26.2 38 977-1021 382-419 (433)
45 1pgu_A Actin interacting prote 92.2 23 0.0008 42.0 44.2 80 660-777 208-290 (615)
46 2oaj_A Protein SNI1; WD40 repe 92.1 35 0.0012 43.8 30.5 29 659-687 489-519 (902)
47 1k8k_C P40, ARP2/3 complex 41 91.9 17 0.00059 39.9 29.7 73 660-773 10-86 (372)
48 4ggc_A P55CDC, cell division c 91.4 17 0.00058 38.8 33.0 70 668-777 36-105 (318)
49 1nr0_A Actin interacting prote 91.3 32 0.0011 41.6 39.2 83 659-776 191-276 (611)
50 3vl1_A 26S proteasome regulato 91.1 23 0.00079 39.8 33.9 80 658-778 139-220 (420)
51 3lrv_A PRE-mRNA-splicing facto 91.1 21 0.0007 39.4 22.7 143 969-1180 142-290 (343)
52 1yfq_A Cell cycle arrest prote 90.9 20 0.0007 38.7 30.6 78 658-772 11-91 (342)
53 2pm9_A Protein WEB1, protein t 90.9 24 0.00081 39.5 23.7 82 659-777 114-204 (416)
54 4ery_A WD repeat-containing pr 90.6 21 0.00072 38.5 36.5 75 659-774 66-142 (312)
55 1l0q_A Surface layer protein; 90.1 27 0.00092 38.8 30.3 46 969-1021 213-262 (391)
56 4aez_A CDC20, WD repeat-contai 89.8 30 0.001 39.0 32.3 145 969-1181 232-379 (401)
57 2xzm_R RACK1; ribosome, transl 89.6 28 0.00095 38.4 37.0 42 972-1019 231-272 (343)
58 3v7d_B Cell division control p 89.2 35 0.0012 39.0 42.9 78 658-774 162-240 (464)
59 4a11_B DNA excision repair pro 89.2 31 0.001 38.2 31.4 51 964-1021 302-353 (408)
60 3ow8_A WD repeat-containing pr 89.1 29 0.001 38.0 37.2 79 659-776 33-117 (321)
61 3iz6_a 40S ribosomal protein R 88.9 34 0.0012 38.4 27.7 149 969-1186 221-379 (380)
62 2ynn_A Coatomer subunit beta'; 88.4 31 0.0011 37.3 32.2 105 604-770 20-128 (304)
63 1yfq_A Cell cycle arrest prote 88.0 32 0.0011 37.1 29.1 61 952-1021 151-213 (342)
64 4g56_B MGC81050 protein; prote 87.9 38 0.0013 37.7 29.3 42 973-1021 246-288 (357)
65 1p22_A F-BOX/WD-repeat protein 87.6 44 0.0015 38.1 30.8 108 619-777 182-292 (435)
66 3odt_A Protein DOA1; ubiquitin 87.4 32 0.0011 36.4 36.2 71 659-770 19-90 (313)
67 3f3f_A Nucleoporin SEH1; struc 86.7 37 0.0012 36.2 30.7 79 658-771 11-91 (351)
68 4aow_A Guanine nucleotide-bind 86.6 38 0.0013 36.4 33.9 44 970-1020 189-233 (340)
69 3lrv_A PRE-mRNA-splicing facto 86.1 34 0.0012 37.5 19.9 151 969-1183 88-245 (343)
70 3dw8_B Serine/threonine-protei 85.8 51 0.0017 37.1 30.7 29 659-687 94-126 (447)
71 2aq5_A Coronin-1A; WD40 repeat 85.7 51 0.0017 36.9 25.6 85 658-776 81-169 (402)
72 2xyi_A Probable histone-bindin 85.6 55 0.0019 37.3 23.7 148 970-1180 248-408 (430)
73 3k26_A Polycomb protein EED; W 84.5 49 0.0017 35.8 30.2 117 658-856 69-191 (366)
74 3jro_A Fusion protein of prote 84.3 91 0.0031 38.7 27.4 77 659-772 10-88 (753)
75 3gre_A Serine/threonine-protei 83.7 38 0.0013 38.4 19.3 78 659-775 169-250 (437)
76 4h5i_A Guanine nucleotide-exch 83.6 58 0.002 36.3 20.6 72 659-770 270-343 (365)
77 3gre_A Serine/threonine-protei 83.5 65 0.0022 36.4 33.4 72 659-769 64-141 (437)
78 2xyi_A Probable histone-bindin 83.1 69 0.0024 36.4 27.3 74 658-770 277-353 (430)
79 3dwl_C Actin-related protein 2 82.9 48 0.0016 36.5 19.4 50 969-1022 115-166 (377)
80 3dm0_A Maltose-binding peripla 82.7 96 0.0033 37.8 29.7 69 660-769 432-502 (694)
81 1k8k_C P40, ARP2/3 complex 41 82.6 60 0.002 35.3 35.3 20 753-772 22-41 (372)
82 3jrp_A Fusion protein of prote 82.4 60 0.0021 35.3 29.5 77 659-772 12-90 (379)
83 3jrp_A Fusion protein of prote 80.4 70 0.0024 34.7 26.7 79 659-771 148-241 (379)
84 3dwl_C Actin-related protein 2 80.3 36 0.0012 37.5 17.0 73 661-772 14-88 (377)
85 1ri6_A Putative isomerase YBHE 79.6 70 0.0024 34.2 33.0 54 966-1021 138-196 (343)
86 1nir_A Nitrite reductase; hemo 78.6 56 0.0019 39.1 19.0 46 969-1021 192-244 (543)
87 1got_B GT-beta; complex (GTP-b 78.3 83 0.0028 34.4 35.7 72 659-771 56-129 (340)
88 2pbi_B Guanine nucleotide-bind 75.3 1E+02 0.0035 33.9 35.7 46 969-1021 213-259 (354)
89 2pbi_B Guanine nucleotide-bind 74.9 1.1E+02 0.0036 33.8 33.2 41 974-1021 304-345 (354)
90 3ei3_B DNA damage-binding prot 74.8 1.1E+02 0.0036 33.8 36.1 73 658-769 118-193 (383)
91 1vyh_C Platelet-activating fac 72.5 1.3E+02 0.0045 33.9 33.9 75 659-774 151-227 (410)
92 4gqb_B Methylosome protein 50; 72.3 1.2E+02 0.0042 33.4 26.9 137 971-1181 187-330 (344)
93 1pby_B Quinohemoprotein amine 70.8 55 0.0019 34.9 14.9 39 975-1020 10-51 (337)
94 3dsm_A Uncharacterized protein 68.8 1.4E+02 0.0047 32.6 20.0 153 966-1179 139-299 (328)
95 1got_B GT-beta; complex (GTP-b 68.0 1.4E+02 0.0048 32.4 34.4 77 660-774 99-177 (340)
96 3odt_A Protein DOA1; ubiquitin 67.9 1.2E+02 0.0042 31.7 34.6 52 952-1015 226-279 (313)
97 3ow8_A WD repeat-containing pr 67.8 1.4E+02 0.0048 32.3 32.9 77 659-776 81-159 (321)
98 2vdu_B TRNA (guanine-N(7)-)-me 65.9 1.8E+02 0.0063 32.9 27.8 47 968-1019 320-370 (450)
99 3dsm_A Uncharacterized protein 65.4 1.3E+02 0.0045 32.8 16.8 44 969-1019 55-100 (328)
100 3iz6_a 40S ribosomal protein R 64.4 1.8E+02 0.0061 32.2 18.3 77 658-774 205-284 (380)
101 4gq1_A NUP37; propeller, trans 62.6 2E+02 0.0067 32.1 24.5 41 975-1021 338-378 (393)
102 3i2n_A WD repeat-containing pr 62.3 1.7E+02 0.0058 31.3 28.2 75 659-770 210-291 (357)
103 3frx_A Guanine nucleotide-bind 61.2 1.8E+02 0.0061 31.3 28.5 70 660-770 67-138 (319)
104 2oit_A Nucleoporin 214KDA; NH2 61.1 65 0.0022 37.2 13.6 27 994-1021 85-111 (434)
105 3jro_A Fusion protein of prote 55.2 3.7E+02 0.013 33.0 27.2 64 1109-1181 219-284 (753)
106 1q7f_A NHL, brain tumor CG1071 54.9 1.7E+02 0.0056 30.7 14.7 22 1160-1181 258-279 (286)
107 2oaj_A Protein SNI1; WD40 repe 54.4 1.2E+02 0.004 38.8 15.5 108 604-773 24-132 (902)
108 1nr0_A Actin interacting prote 53.3 3.5E+02 0.012 32.2 43.5 29 659-687 60-90 (611)
109 2pm7_B Protein transport prote 52.4 1.8E+02 0.0061 30.8 14.6 108 605-770 17-132 (297)
110 3amr_A 3-phytase; beta-propell 52.1 3E+02 0.01 31.0 17.8 91 924-1021 29-149 (355)
111 1erj_A Transcriptional repress 51.1 2.9E+02 0.01 30.6 24.5 76 658-774 165-242 (393)
112 2xzm_R RACK1; ribosome, transl 50.0 2.8E+02 0.0094 30.0 31.1 70 659-769 77-148 (343)
113 1jmx_B Amine dehydrogenase; ox 49.0 2.4E+02 0.0083 29.9 15.2 146 969-1178 14-171 (349)
114 4e54_B DNA damage-binding prot 48.5 86 0.0029 35.7 11.8 81 658-776 250-333 (435)
115 4gga_A P55CDC, cell division c 48.4 3.3E+02 0.011 30.4 32.0 54 628-690 124-181 (420)
116 1ri6_A Putative isomerase YBHE 48.4 2.7E+02 0.0092 29.4 30.7 52 966-1020 240-294 (343)
117 3scy_A Hypothetical bacterial 46.8 3.1E+02 0.011 29.6 28.4 55 966-1021 164-229 (361)
118 3fm0_A Protein CIAO1; WDR39,SG 46.7 3.1E+02 0.011 29.7 34.4 73 660-770 18-92 (345)
119 3fm0_A Protein CIAO1; WDR39,SG 44.0 3.4E+02 0.012 29.3 30.5 76 659-772 106-183 (345)
120 1pby_B Quinohemoprotein amine 43.9 3.1E+02 0.011 28.8 27.4 26 752-777 47-72 (337)
121 3vu4_A KMHSV2; beta-propeller 42.2 3.7E+02 0.013 29.2 20.1 112 620-777 110-234 (355)
122 3vu4_A KMHSV2; beta-propeller 41.8 2.6E+02 0.0089 30.6 14.2 74 658-770 195-271 (355)
123 2j04_A TAU60, YPL007P, hypothe 34.9 4.4E+02 0.015 31.8 15.0 139 969-1178 100-250 (588)
124 2hes_X YDR267CP; beta-propelle 32.7 4.8E+02 0.017 27.8 20.1 30 658-687 107-138 (330)
125 3f3f_A Nucleoporin SEH1; struc 31.3 4.6E+02 0.016 27.2 26.8 31 658-688 57-91 (351)
126 3bg1_A Protein SEC13 homolog; 29.4 4.7E+02 0.016 27.7 13.4 75 659-770 14-90 (316)
127 4h5i_A Guanine nucleotide-exch 29.4 5.9E+02 0.02 27.8 21.0 25 753-777 283-307 (365)
128 4gq1_A NUP37; propeller, trans 27.6 4.6E+02 0.016 28.9 13.4 80 667-774 100-179 (393)
129 2hes_X YDR267CP; beta-propelle 27.4 5.9E+02 0.02 27.1 35.2 73 659-769 15-88 (330)
130 2iwa_A Glutamine cyclotransfer 23.0 7.1E+02 0.024 26.5 14.0 57 994-1093 11-69 (266)
131 3qqz_A Putative uncharacterize 21.8 5.9E+02 0.02 26.9 11.9 90 924-1022 39-140 (255)
132 2vdu_B TRNA (guanine-N(7)-)-me 21.5 8.7E+02 0.03 27.0 35.1 19 751-769 115-133 (450)
133 3amr_A 3-phytase; beta-propell 21.5 8.8E+02 0.03 27.1 16.5 61 677-768 98-160 (355)
134 3hfq_A Uncharacterized protein 20.9 7.6E+02 0.026 26.1 21.7 53 966-1020 150-204 (347)
135 1xip_A Nucleoporin NUP159; bet 20.3 5.7E+02 0.019 28.9 12.0 99 619-773 96-194 (388)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=1.5e-122 Score=1215.00 Aligned_cols=856 Identities=19% Similarity=0.306 Sum_probs=673.7
Q ss_pred CcchhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCcc
Q 001003 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1192)
Q Consensus 1 m~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~ 80 (1192)
|+|+|+.++||||+|+||++|||++++.+ ||||||+|+||||++.+ +|
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~---------------------------~Lvvak~~~Lel~~~~~--~~--- 66 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDL---------------------------NLLIAKNTRLEIYVVTA--EG--- 66 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSCC---------------------------EEEEEETTEEEEEEEET--TE---
T ss_pred ccEEEEEEeeCCChhhEEEEEEcCCCCcc---------------------------EEEEecCCEEEEEEEcc--cc---
Confidence 99999999999999999999999999876 99999999999999762 23
Q ss_pred ccCCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeee
Q 001003 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh 160 (1192)
|++++++++||+|++|+++|++++ ++|+|+|+|+++|+++|+||++++.+.+++.|
T Consensus 67 --------------------L~~v~~~~l~G~I~~l~~~r~~g~----~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~ 122 (1158)
T 3ei3_A 67 --------------------LRPVKEVGMYGKIAVMELFRPKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRA 122 (1158)
T ss_dssp --------------------EEEEEEEECSSCEEEEEEECCTTC----SSCEEEEEETTCEEEEEEEEC-CCCCEEEEEE
T ss_pred --------------------eEEEEEEEcccEEEEEEEEcCCCC----CceEEEEEeCCceEEEEEEcCCCCceeEEEEe
Confidence 999999999999999999999886 79999999999999999999997766555555
Q ss_pred eeeccccccccCCcccccCCCeEEECCCCcEEEEEEcCceEEEEeCccCCCCCCCCCCCCCCCCCccceeeceEEEEccc
Q 001003 161 CFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240 (1192)
Q Consensus 161 ~~E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~ 240 (1192)
+..-. .+.|+ ...++++++|||+|||++|++|+++++|+||.+.+.. ..++.+++.+
T Consensus 123 ~~~~~----~~~~r-~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~------------------l~~~~~~l~~ 179 (1158)
T 3ei3_A 123 HGNVQ----DRIGR-PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKE------------------LKAFNIRLEE 179 (1158)
T ss_dssp EEECC----CSSCC-BCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTT------------------CCCEEEECSC
T ss_pred ccccc----cCccc-cCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCccc------------------cccccccccc
Confidence 42211 24453 3578999999999999999999999999999764321 1467888877
Q ss_pred cCccceeeeeeccCCcccEEEEEEecCCCcccceeeeeeeeEEEEEEEeeccce-eeeeeeeccCCcccceeEEecCCCC
Q 001003 241 LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQ-HPLIWSAMNLPHDAYKLLAVPSPIG 319 (1192)
Q Consensus 241 ldi~~V~D~~FL~gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l~~~sLdl~~k~-~~~i~s~~~Lp~d~~~LipvP~p~G 319 (1192)
+ +|+||+|||||+|||||+|||+.. || .+++++||+..+. .+.+|++++||++|++|||||+|+|
T Consensus 180 ~---~v~d~~fL~g~~~P~~A~Ly~d~~---~~--------~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~g 245 (1158)
T 3ei3_A 180 L---HVIDVKFLYGCQAPTICFVYQDPQ---GR--------HVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFG 245 (1158)
T ss_dssp C---CEEEEEECSSCSSCEEEEEEEETT---EE--------EEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTC
T ss_pred c---eEEEEEEecCCCCcEEEEEEECCC---CC--------EEEEEEEEcCCCeeeecccccccCCCCCCEEEECCCCCc
Confidence 6 999999999999999999999854 43 3458999998874 4457998899999999999999999
Q ss_pred eEEEEecceEEEEeCCCceeEeccccccccCCCccCcCCCceeEeeceeeEEe-eCcEEEEEcCCCCEEEEEEEECCc--
Q 001003 320 GVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWL-QNDVALLSTKTGDLVLLTVVYDGR-- 396 (1192)
Q Consensus 320 GvLVig~n~I~y~d~~~~~~~a~N~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~Ll~~~~G~L~~l~l~~dg~-- 396 (1192)
||||||+|.|+|+|+++...++. +..+++ + + .|.+.+. +..++||++++|+||+|+|..|++
T Consensus 246 Gvlv~g~n~i~y~~~~~~~~~~~----------p~~~~~---~-i-~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~ 310 (1158)
T 3ei3_A 246 GAIIIGQESITYHNGDKYLAIAP----------PIIKQS---T-I-VCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMD 310 (1158)
T ss_dssp CEEEECSSCEEEEETTEEEEECC----------GGGGGS---C-E-EEEEECSTTSSEEEEEETTCEEEEEEEEEEC---
T ss_pred eEEEEECCEEEEEcCCCceEEec----------cccCCc---e-E-EEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCcc
Confidence 99999999999999887543221 111111 1 2 2333332 346899999999999999999976
Q ss_pred ---eEeeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEeeCCCcccccCCCccccCCcccCCccchhccCCCcc
Q 001003 397 ---VVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473 (1192)
Q Consensus 397 ---~V~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 473 (1192)
.|++|+++|+|++++|+||++|++|+||+||++|||+||||...+ +
T Consensus 311 ~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~----------~--------------------- 359 (1158)
T 3ei3_A 311 GTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDS----------N--------------------- 359 (1158)
T ss_dssp --CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSC----------C---------------------
T ss_pred CceeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCC----------C---------------------
Confidence 799999999999999999999999999999999999999997631 0
Q ss_pred hhhcccCccccccccCCCCCccccccceeEEEEeeecccCCccccccccccCCCC----CccCCCCCCceEE--------
Q 001003 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL-------- 541 (1192)
Q Consensus 474 ~~d~~~~~~e~~ly~~~~~~~~~~~~~~~~~v~Dsl~NigPI~D~~vg~~~~~~~----~~sG~g~~gsL~i-------- 541 (1192)
+ ...+|+++|+++|+|||.||++++.....+ +|||.|++|+|++
T Consensus 360 ---~---------------------~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~ 415 (1158)
T 3ei3_A 360 ---E---------------------QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH 415 (1158)
T ss_dssp ---T---------------------TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred ---C---------------------ccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence 0 012489999999999999999987643332 5999999999997
Q ss_pred ----EeCCCcCEEEEEEecCCCCCCCCcccccccCCCcceEEEEEeccceEEEEe-cCceeeeecccCccccCCcEEEEe
Q 001003 542 ----VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIAAGN 616 (1192)
Q Consensus 542 ----~eLpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~-g~~~eEv~~~~gF~~~~~TI~ag~ 616 (1192)
.+|||++++|+++.. .++++|+|||+||.++|+||++ |+++||+++ .||.++++||+||+
T Consensus 416 ~~~~~~l~gv~~iWtl~~~--------------~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~-~gf~~~~~TL~~~~ 480 (1158)
T 3ei3_A 416 EHASIDLPGIKGLWPLRSD--------------PNRETDDTLVLSFVGQTRVLMLNGEEVEETEL-MGFVDDQQTFFCGN 480 (1158)
T ss_dssp EEEEECCCSCCEEEEECCC--------------SSCSSCCEEEEEETTEEEEEEEETTEEEEECC-TTCCSSSCEEEEEE
T ss_pred EEEeecCCCccEEEEEeec--------------CCCCCCCEEEEECCCCeEEEEEeCCccccccc-ccccCCCCcEEEEE
Confidence 589999999999864 3578999999999999999997 889999964 79999999999999
Q ss_pred eCCCCEEEEEecCcEEEEeCCc--ceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEee
Q 001003 617 LFGRRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSV 694 (1192)
Q Consensus 617 l~~~~~IvQVt~~~vrli~~~~--~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~ 694 (1192)
+ ++++|||||+++||+++.+. +++ +|.+| .+..|++|++++++|+++. ++.+.+|+++..+ +..
T Consensus 481 l-~~~~ivQVt~~~Irli~~~~~~~~~---------~w~~p-~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~--L~~ 546 (1158)
T 3ei3_A 481 V-AHQQLIQITSASVRLVSQEPKALVS---------EWKEP-QAKNISVASCNSSQVVVAV-GRALYYLQIHPQE--LRQ 546 (1158)
T ss_dssp E-TTTEEEEEESSCEEEEESSSCCEEE---------EECCT-TCCCCCEEEECSSEEEEEE-TTEEEEEEEETTE--EEE
T ss_pred c-CCCeEEEEecCEEEEEECCCCeEEE---------EEECC-CCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc--eee
Confidence 9 57799999999999999764 444 56655 6778999999999999994 8899999998632 322
Q ss_pred ccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 695 QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 695 ~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.....+ +.+|+|+++.... .+.....+.++.+|.+++++||+||+++.+
T Consensus 547 ~~~~~l---~~evscl~i~~~~----------------------------~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 547 ISHTEM---EHEVACLDITPLG----------------------------DSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp EEEEEC---SSCEEEEECCCCS----------------------------SSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred ecccCC---CCceEEEEeecCC----------------------------CCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 233334 5678887653110 001123445555777999999999998887
Q ss_pred EEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEE
Q 001003 775 FTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQ 854 (1192)
Q Consensus 775 ~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~ 854 (1192)
..+. + + + +..+.+|++..++ ++|||+++|+||.++.|.
T Consensus 596 ~~~~-L---~----~-------------------------------~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 596 HKEM-L---G----G-------------------------------EIIPRSILMTTFE---SSHYLLCALGDGALFYFG 633 (1158)
T ss_dssp EEEE-C---C----S-------------------------------SCCEEEEEEEEET---TEEEEEEEETTSEEEEEE
T ss_pred EEEE-C---C----C-------------------------------CCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEE
Confidence 6553 1 1 0 0134568888883 679999999999999998
Q ss_pred EeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCCCCCCCccceE--EeeccCCceEEEEcCCC
Q 001003 855 AYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRIT--IFKNISGHQGFFLSGSR 932 (1192)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~~~~~g~~~l~--~f~~i~G~~gVF~~G~r 932 (1192)
+....+ .+ +++|. +| +|.+|++ +|++.+ ..+||++|+|
T Consensus 634 ~d~~tg-----~l---------------~d~r~---~~----------------LG~~pv~L~~~~~~~-~~~V~a~s~r 673 (1158)
T 3ei3_A 634 LNIETG-----LL---------------SDRKK---VT----------------LGTQPTVLRTFRSLS-TTNVFACSDR 673 (1158)
T ss_dssp ECTTTC-----CE---------------EEEEE---EE----------------CCSSCCEEEEEESSS-CEEEEEESSS
T ss_pred EcCCCC-----cc---------------cccee---EE----------------cCCCceEEEEEeeCC-ceeEEEECCC
Confidence 642110 11 22221 23 3666655 556554 5899999999
Q ss_pred CeEEEEeCCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEec
Q 001003 933 PCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFA 1012 (1192)
Q Consensus 933 P~wi~~~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~ 1012 (1192)
|+|+++++++++++|+ +..++.++|||++++||+||++++.+ +||||++++.. .||+|+ |||++|||||+|||
T Consensus 674 p~liy~~~~~l~~s~l-~~~~v~~~~~F~se~~~~g~v~~~~~-~LrI~~i~~~~----~~~~~~-ipL~~Tprri~y~~ 746 (1158)
T 3ei3_A 674 PTVIYSSNHKLVFSNV-NLKEVNYMCPLNSDGYPDSLALANNS-TLTIGTIDEIQ----KLHIRT-VPLYESPRKICYQE 746 (1158)
T ss_dssp CEEEEESSSSEEEEEB-SSSCCCEEEEECCSSSTTEEEEECSS-CEEEEEECCSS----SEEEEE-EECSSEEEEEEEEG
T ss_pred CEEEEEcCCceEEecc-ChHHhceEeccCcccCCCcEEEEcCC-ceEEEEecccC----CeeEEE-EeCCCCceEEEEcC
Confidence 9777777899999997 66899999999999999999998877 79999998774 699999 99999999999999
Q ss_pred CCCEEEEEEeecCcccccc---cccc------ccccccc-cc-cccCCCCccccccCcceeeeEEEEEcCCCCCCCceee
Q 001003 1013 EKNLYPLIVSVPVLKPLNQ---VLSL------LIDQEVG-HQ-IDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTR 1081 (1192)
Q Consensus 1013 ~~~~y~v~~s~~~~~~~~~---~~~~------~~~ee~~-~~-~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~i 1081 (1192)
++++|+|++++.+ ++.. ..+. ..+++.. .. ...+....++..+.++.++++|+|+||. +|+++
T Consensus 747 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~----t~~~i 820 (1158)
T 3ei3_A 747 VSQCFGVLSSRIE--VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH----TFEVL 820 (1158)
T ss_dssp GGTEEEEEEEEEE--EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT----TCCEE
T ss_pred CCCEEEEEEEecc--ccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC----CCeEE
Confidence 9999999998642 1100 0000 0000000 00 0000001112223344689999999995 99999
Q ss_pred eeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccC-cccccCceEEEEEeeeCCCCCceeEeecccCcccccchh
Q 001003 1082 ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQG-EDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQI 1160 (1192)
Q Consensus 1082 d~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g-Ed~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~ 1160 (1192)
+.|+|++||+++||++|+|.+ +.++||||||++++| ||+++||||+||++++ .+++.+|.++..+++++..+
T Consensus 821 ~~~~l~~nE~~~sv~~v~~~~----~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~~~v~g~v~al~~- 893 (1158)
T 3ei3_A 821 HAHQFLQNEYALSLVSCKLGK----DPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAEKEVKGAVYSMVE- 893 (1158)
T ss_dssp EEEECCTTEEEEEEEEECCTT----CCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEEEEESSCEEEEEE-
T ss_pred EEEeCCCCcceEEEEEEEEcc----CCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEEEEcCCcCEEEee-
Confidence 999999999999999999963 357899999999996 8999999999999993 58999998888777777665
Q ss_pred cccCceEEEeecceEEeeehhhh
Q 001003 1161 DFASHFFAICSNSFVFVFLFSFL 1183 (1192)
Q Consensus 1161 ~~~~~~~a~~~~~~~~~~~~~~~ 1183 (1192)
|+|+++|++ +++++||.|.--
T Consensus 894 -~~g~Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 894 -FNGKLLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp -ETTEEEEEE-TTEEEEEEECTT
T ss_pred -eCCEEEEEc-CCEEEEEECCCC
Confidence 999887776 589999999743
No 2
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.66 E-value=0.044 Score=64.21 Aligned_cols=111 Identities=15% Similarity=0.243 Sum_probs=73.2
Q ss_pred EEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccccc
Q 001003 661 VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAID 740 (1192)
Q Consensus 661 Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1192)
|.+.+..+.+++.+..||+|.+|.+........+. .....|.++++..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~------~h~~~V~~l~~~~-------------------------- 172 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS------GHDGGVWALKYAH-------------------------- 172 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECS--------------------------
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe------CCCcCEEEEEEcC--------------------------
Confidence 67788888999999999999999876553322221 2345677665420
Q ss_pred CCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccc
Q 001003 741 GADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIH 820 (1192)
Q Consensus 741 ~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1192)
.. +++.+..+|.+.||++.+.+++..... .
T Consensus 173 ---------~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~----h------------------------------------ 202 (464)
T 3v7d_B 173 ---------GG-ILVSGSTDRTVRVWDIKKGCCTHVFEG----H------------------------------------ 202 (464)
T ss_dssp ---------TT-EEEEEETTSCEEEEETTTTEEEEEECC----C------------------------------------
T ss_pred ---------CC-EEEEEeCCCCEEEEECCCCcEEEEECC----C------------------------------------
Confidence 12 677788899999999987665433220 0
Q ss_pred cccEEEEEEeecCCCCCccEEEEEecCCcEEEEEEe
Q 001003 821 SMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1192)
Q Consensus 821 ~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~ 856 (1192)
...|..+.+... ....+|+..-.||.+.+|.+.
T Consensus 203 ~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 203 NSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp SSCEEEEEEEES---SSCEEEEEEETTSCEEEEECC
T ss_pred CCccEEEEEecC---CCCCEEEEEcCCCcEEEeeCC
Confidence 112444444332 356788899999999999863
No 3
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.29 Score=55.55 Aligned_cols=142 Identities=10% Similarity=0.056 Sum_probs=77.1
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEec-CCCccCeEEEecCCCEEEEEEeecCcccccccccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIP-LKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ip-L~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~ 1047 (1192)
++....++.++|..+.... .++. +. ....+..++++|.. +++..+.
T Consensus 262 l~~~~~d~~i~i~d~~~~~------~~~~-~~~~~~~i~~~~~~~~~--~l~~~~~------------------------ 308 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGN------SQNC-FYGHSQSIVSASWVGDD--KVISCSM------------------------ 308 (425)
T ss_dssp EEEEETTSCEEEECSSSBS------CSEE-ECCCSSCEEEEEEETTT--EEEEEET------------------------
T ss_pred EEEEcCCCEEEEEECCCCc------cceE-ecCCCccEEEEEECCCC--EEEEEeC------------------------
Confidence 4444446788888877643 4455 54 44568899999877 3332221
Q ss_pred CCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccC
Q 001003 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1127 (1192)
Q Consensus 1048 ~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~r 1127 (1192)
...|++++.. +.+.+..+.... ..+.++ .+. ....+|++|+ ..
T Consensus 309 ---------------d~~i~i~d~~----~~~~~~~~~~~~-~~i~~~---~~s-----~~~~~l~~~~---------~d 351 (425)
T 1r5m_A 309 ---------------DGSVRLWSLK----QNTLLALSIVDG-VPIFAG---RIS-----QDGQKYAVAF---------MD 351 (425)
T ss_dssp ---------------TSEEEEEETT----TTEEEEEEECTT-CCEEEE---EEC-----TTSSEEEEEE---------TT
T ss_pred ---------------CCcEEEEECC----CCcEeEecccCC-ccEEEE---EEc-----CCCCEEEEEE---------CC
Confidence 1146677763 556665555332 234443 332 1245888885 35
Q ss_pred ceEEEEEeeeCCC--C--------------CceeEeeccc-Cc-ccccchhcccCceEEEeecc-eEEeeeh
Q 001003 1128 GRVLLFSTGRNAD--N--------------PQNLVLSGSY-GP-LFSSVQIDFASHFFAICSNS-FVFVFLF 1180 (1192)
Q Consensus 1128 GRIlvfev~~~~~--~--------------~e~~~~~~~~-~~-~~~~~~~~~~~~~~a~~~~~-~~~~~~~ 1180 (1192)
|.|.||++..... + ++.++.-..- .. ....++-.-.|++||+|+.. .|++|-+
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8999999964210 0 0011111111 11 23334433468888877766 5777754
No 4
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.09 E-value=0.6 Score=52.80 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=52.8
Q ss_pred CCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 658 NSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 658 ~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
...|.+++....+++.+..||+|.+|..+.............+......|.++++..+..
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------------- 75 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE-------------------- 75 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE--------------------
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc--------------------
Confidence 346999999999999999999999999876541000000011112345677766542210
Q ss_pred cccCCCCCCCCCCc---EEEEEEecCCeEEEEECCCce
Q 001003 738 AIDGADGGPLDQGD---IYSVVCYESGALEIFDVPNFN 772 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~---~~l~v~~~~g~l~I~sLP~~~ 772 (1192)
... .+++.+..+|.+.||++.+.+
T Consensus 76 -----------~~g~~~~~l~s~~~dg~i~iw~~~~~~ 102 (397)
T 1sq9_A 76 -----------RDAFELCLVATTSFSGDLLFYRITRED 102 (397)
T ss_dssp -----------TTTEEEEEEEEEETTSCEEEEEEEECT
T ss_pred -----------cCCccccEEEEEcCCCCEEEEEccCCc
Confidence 012 467778889999999986543
No 5
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.66 Score=51.40 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=69.2
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccC
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNH 1048 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~ 1048 (1192)
++....++.+++-.+.... .+++ +.....+..++++|..+.+++...... ..... .+
T Consensus 233 l~~~~~d~~i~v~d~~~~~------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~--~~---------- 289 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQ------VLKK-YETDCPLNTAVITPLKEFIILGGGQEA----KDVTT--TS---------- 289 (369)
T ss_dssp EEEEETTSEEEEEETTTCC------EEEE-EECSSCEEEEEECSSSSEEEEEECCC------------------------
T ss_pred EEEecCCceEEEEECCCCc------eeee-ecCCCCceeEEecCCCceEEEeecCCC----ceEEE--Ee----------
Confidence 4444556889998887654 6677 887888999999999998888765321 00000 00
Q ss_pred CCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCc
Q 001003 1049 NLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARG 1128 (1192)
Q Consensus 1049 ~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rG 1128 (1192)
.......+++.+.. +.+.+..+.-. ...|.++ .+. . ...+|+.|+ ..|
T Consensus 290 ----------~~~~~~~i~~~d~~----~~~~~~~~~~~-~~~v~~~---~~s---~--~~~~l~s~~---------~dg 337 (369)
T 3zwl_B 290 ----------ANEGKFEARFYHKI----FEEEIGRVQGH-FGPLNTV---AIS---P--QGTSYASGG---------EDG 337 (369)
T ss_dssp ---------------CEEEEEETT----TCCEEEEEECC-SSCEEEE---EEC---T--TSSEEEEEE---------TTS
T ss_pred ----------cCCCcceeEEEecC----CCcchhheecc-cCcEEEE---EEC---C--CCCEEEEEc---------CCC
Confidence 00234568888874 55666555422 2344444 332 1 235888884 468
Q ss_pred eEEEEEeee
Q 001003 1129 RVLLFSTGR 1137 (1192)
Q Consensus 1129 RIlvfev~~ 1137 (1192)
.|.||++..
T Consensus 338 ~v~iw~~~~ 346 (369)
T 3zwl_B 338 FIRLHHFEK 346 (369)
T ss_dssp EEEEEEECH
T ss_pred eEEEEECcc
Confidence 999999975
No 6
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.93 E-value=1.6 Score=54.86 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=71.9
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +++++++..||+|.+|........-... .....|.++++..+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~--------------------- 66 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ------VTETPVRAGKFIAR--------------------- 66 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE------CCSSCEEEEEEEGG---------------------
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe------cCCCcEEEEEEeCC---------------------
Confidence 347777774 6799999999999999876543321211 12456776655321
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcc
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRK 816 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1192)
. .+++++..+|.+.||++.+.+.+.....-
T Consensus 67 -------------~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------------------------------------ 96 (814)
T 3mkq_A 67 -------------K-NWIIVGSDDFRIRVFNYNTGEKVVDFEAH------------------------------------ 96 (814)
T ss_dssp -------------G-TEEEEEETTSEEEEEETTTCCEEEEEECC------------------------------------
T ss_pred -------------C-CEEEEEeCCCeEEEEECCCCcEEEEEecC------------------------------------
Confidence 1 26778888999999999876654433210
Q ss_pred cccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEE
Q 001003 817 ENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 817 ~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
...|..+. |. ...++|+..-.||.+.+|.+
T Consensus 97 ----~~~v~~~~---~s--~~~~~l~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 97 ----PDYIRSIA---VH--PTKPYVLSGSDDLTVKLWNW 126 (814)
T ss_dssp ----SSCEEEEE---EC--SSSSEEEEEETTSEEEEEEG
T ss_pred ----CCCEEEEE---Ee--CCCCEEEEEcCCCEEEEEEC
Confidence 01233343 32 34568888889999999986
No 7
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.85 E-value=0.78 Score=50.76 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=52.4
Q ss_pred CCcEEEEEEcC-----CEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccc
Q 001003 658 NSTVLSVSIAD-----PYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLS 732 (1192)
Q Consensus 658 ~~~Iv~asi~d-----pyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~ 732 (1192)
...|.++++.. .+++.+..||+|.+|.++..+..+.. .+......|.++++..+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~h~~~v~~~~~~~~----------------- 97 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK----AQQMHTGPVLDVCWSDD----------------- 97 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE----EEEECSSCEEEEEECTT-----------------
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE----EeccccCCEEEEEECcC-----------------
Confidence 45699998863 68888999999999998763332211 11113456777655311
Q ss_pred cCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 733 TGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+..+|.+.||++.+.+++
T Consensus 98 -----------------~~-~l~s~~~dg~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 98 -----------------GS-KVFTASCDKTAKMWDLSSNQAI 121 (368)
T ss_dssp -----------------SS-EEEEEETTSEEEEEETTTTEEE
T ss_pred -----------------CC-EEEEEcCCCcEEEEEcCCCCce
Confidence 12 6677888999999999876654
No 8
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.56 E-value=1.6 Score=49.89 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=32.8
Q ss_pred cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 975 QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 975 ~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
++.+++-.+.... ++++ +..+..+..++++|..+.+++++
T Consensus 283 d~~i~i~d~~~~~------~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 283 DKQIHFWNAATGA------RVNT-VDAGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp TCEEEEEETTTCC------EEEE-EECSSCEEEEEECSSSSEEEEEE
T ss_pred CCEEEEEECCCCC------EEEE-EeCCCcEEEEEECCCCCeEEEEe
Confidence 6899999887654 6787 88888899999999988877754
No 9
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.49 E-value=1.6 Score=49.21 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=51.1
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +.+++.+..||+|.+|..+ +..+.. +......|.++++..+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~-----~~~~~~~v~~~~~~~~--------------------- 160 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKT--GALLNV-----LNFHRAPIVSVKWNKD--------------------- 160 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEE-----ECCCCSCEEEEEECTT---------------------
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeee-----ccCCCccEEEEEECCC---------------------
Confidence 368888885 5689999999999999732 222221 1112446776654211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
.. +++.+..+|.+.+|++.+.+.+....
T Consensus 161 -------------~~-~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 161 -------------GT-HIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp -------------SS-EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred -------------CC-EEEEEecCCeEEEEECCCCcEEEEee
Confidence 12 56677779999999998877665443
No 10
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.25 E-value=1.9 Score=47.47 Aligned_cols=42 Identities=12% Similarity=0.047 Sum_probs=27.7
Q ss_pred EecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEec---CCCEEEEEE
Q 001003 973 TSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFA---EKNLYPLIV 1021 (1192)
Q Consensus 973 ~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~---~~~~y~v~~ 1021 (1192)
..++.+++..+.... ..+. ......+..++++| ..+.+++++
T Consensus 187 ~~d~~i~i~d~~~~~------~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 187 YDNGDIKLFDLRNMA------LRWE-TNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp ETTSEEEEEETTTTE------EEEE-EECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ccCCeEEEEECccCc------eeee-cCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 334677777776543 3444 56677789999999 666666643
No 11
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.12 E-value=2.1 Score=46.64 Aligned_cols=41 Identities=2% Similarity=-0.046 Sum_probs=27.2
Q ss_pred EecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEE
Q 001003 973 TSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 973 ~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~ 1020 (1192)
..++.+++..+.... ..+. ..-...+..++++|..+.++.+
T Consensus 243 ~~~~~i~~~~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 243 MESSNVEVLHVNKPD------KYQL-HLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp ETTSCEEEEETTSSC------EEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCcEEEEECCCCC------eEEE-cCCccceeEEEECCCCCEEEEe
Confidence 446789998887653 2232 3334568889999988866553
No 12
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.08 E-value=1.4 Score=50.07 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.2
Q ss_pred EEEEEecCCeEEEEECCC
Q 001003 753 YSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~ 770 (1192)
+++.+..+|.+.||++..
T Consensus 81 ~l~~~~~dg~v~vw~~~~ 98 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNE 98 (416)
T ss_dssp CEEEEESSSCEEEECCSS
T ss_pred eEEEEccCCeEEEeeccc
Confidence 567788899999999876
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.08 E-value=3 Score=48.14 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=51.6
Q ss_pred CcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 659 STVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 659 ~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
..|.+.+..+.+++.+..||+|.+|..........+. .....|.+++. +
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~--~----------------------- 182 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT------GHTGSVLCLQY--D----------------------- 182 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC------CCSSCEEEEEC--C-----------------------
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc------CCCCcEEEEEE--C-----------------------
Confidence 4589999999999999999999999876543322211 12445665543 1
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+..+|.+.||++.+.+++
T Consensus 183 -----------~~-~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 183 -----------ER-VIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp -----------SS-EEEEEETTSCEEEEESSSCCEE
T ss_pred -----------CC-EEEEEcCCCeEEEEECCCCcEE
Confidence 11 6777888999999999876554
No 14
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.07 E-value=2.6 Score=47.38 Aligned_cols=74 Identities=19% Similarity=0.114 Sum_probs=49.5
Q ss_pred CcEEEEEEcC---CEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 659 STVLSVSIAD---PYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 659 ~~Iv~asi~d---pyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
..|.+++... .+++.+..||+|.+|.++.......... ......|.++++..+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~h~~~v~~~~~~~~-------------------- 129 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG----MGPGDAITGMKFNQF-------------------- 129 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC----CSTTCBEEEEEEETT--------------------
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec----CCcCCceeEEEeCCC--------------------
Confidence 4588887753 5899999999999999875544222211 012456777665311
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
...+++.+..+|.+.||++..
T Consensus 130 --------------~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 130 --------------NTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp --------------EEEEEEEEETTTEEEEEETTS
T ss_pred --------------CCCEEEEEeCCCEEEEEECCC
Confidence 124777888899999999875
No 15
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.97 E-value=3 Score=47.31 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=27.1
Q ss_pred EecCeEEEEEcCCCCccCCccceEEEecC--CCccCeEEEecCCCEEEE
Q 001003 973 TSQGILKICQLPSGSTYDNYWPVQKVIPL--KATPHQITYFAEKNLYPL 1019 (1192)
Q Consensus 973 ~~~~~LrI~~l~~~~~~d~~~~vrk~ipL--~~tp~~Iay~~~~~~y~v 1019 (1192)
..+|.++|-.+.... .+.+ ++- ...+..++++|..+.+++
T Consensus 266 ~~dg~i~i~d~~~~~------~~~~-~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 266 HVSGVITVHNVFSKE------QTIQ-LPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp ETTSCEEEEETTTCC------EEEE-ECCTTSSCEEEEEECSSCTTEEE
T ss_pred cCCCeEEEEECCCCc------eeEE-cccccCCCceeEEEeCCCCCEEE
Confidence 446789999887654 4555 544 345888999998873333
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.96 E-value=3.4 Score=47.74 Aligned_cols=76 Identities=16% Similarity=0.331 Sum_probs=52.8
Q ss_pred CCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 658 NSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 658 ~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
...|.+++..+.+++.+..||+|.+|..+......... .....|.++++ +
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~--~---------------------- 208 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY------GHTSTVRCMHL--H---------------------- 208 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEE--E----------------------
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEEC------CCCCcEEEEEe--c----------------------
Confidence 34599999999999999999999999886553322211 12445665543 1
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
.. .++.+..+|.+.+|++.+.+++..
T Consensus 209 ------------~~-~l~s~s~dg~i~~wd~~~~~~~~~ 234 (445)
T 2ovr_B 209 ------------EK-RVVSGSRDATLRVWDIETGQCLHV 234 (445)
T ss_dssp ------------TT-EEEEEETTSEEEEEESSSCCEEEE
T ss_pred ------------CC-EEEEEeCCCEEEEEECCCCcEEEE
Confidence 11 467788899999999987665433
No 17
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.88 E-value=7.8 Score=51.29 Aligned_cols=100 Identities=12% Similarity=0.183 Sum_probs=60.2
Q ss_pred CCEEEEEecCcEEEEeCCc--ceeeeecCCCCCCCCCCCCCCcEEEEEE--cCCEEEEEEeCCcEEEEEecCCCceEeec
Q 001003 620 RRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQ 695 (1192)
Q Consensus 620 ~~~IvQVt~~~vrli~~~~--~~q~i~~~~~~~e~~~~~~~~~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~l~~~ 695 (1192)
+..++=.....+++++... ....+.. + ....|.++++ .+.+++.+..||+|.+|..+.........
T Consensus 810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~-------~---~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 879 (1249)
T 3sfz_A 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHT-------G---HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 879 (1249)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEEEC-------S---SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCEEEEEcCCcEEEEEecCCCceeEEcC-------C---CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC
Confidence 4455555667788887543 2222221 1 2234555555 57899999999999999887643322211
Q ss_pred cccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 696 TPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 696 ~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
.....|.++++..+ .. +++.+..+|.+.+|++.+
T Consensus 880 ------~h~~~v~~v~~spd----------------------------------g~-~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 880 ------GHLSWVHGVMFSPD----------------------------------GS-SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp ------CCSSCEEEEEECTT----------------------------------SS-EEEEEETTSCEEEEEHHH
T ss_pred ------CCccceEEEEECCC----------------------------------CC-EEEEEeCCCeEEEEEccc
Confidence 22445666654211 12 566777889999999764
No 18
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.73 E-value=3.6 Score=46.23 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=34.5
Q ss_pred CCcEEEEE-ecCeEEEEEcCCCCccCCccceEEEecC-------CCccCeEEEecCCCEEEEEE
Q 001003 966 NHGFIYVT-SQGILKICQLPSGSTYDNYWPVQKVIPL-------KATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 966 ~~Gfi~~~-~~~~LrI~~l~~~~~~d~~~~vrk~ipL-------~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+|+++.. .++.++|..+.... ++++ +.. ...+..++++|..+.+++++
T Consensus 196 ~~~~l~~~~~dg~i~i~d~~~~~------~~~~-~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~ 252 (397)
T 1sq9_A 196 ERGLIATGFNNGTVQISELSTLR------PLYN-FESQHSMINNSNSIRSVKFSPQGSLLAIAH 252 (397)
T ss_dssp TTSEEEEECTTSEEEEEETTTTE------EEEE-EECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred CCceEEEEeCCCcEEEEECCCCc------eeEE-EeccccccccCCccceEEECCCCCEEEEEe
Confidence 45533333 35789998887654 6677 776 66789999999888776654
No 19
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.65 E-value=3.8 Score=45.93 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=71.6
Q ss_pred CCcEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEeeccc-------cccccCCCceeEEEeeccCCCCCccccccc
Q 001003 658 NSTVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTP-------AAIESSKKPVSSCTLYHDKGPEPWLRKTST 727 (1192)
Q Consensus 658 ~~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~-------~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~ 727 (1192)
...|.++++. +.+++.+..||+|.+|.++........... .........|.++++..+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------ 110 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH------------ 110 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT------------
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC------------
Confidence 3458888885 478888999999999988754321111000 000012345555544211
Q ss_pred ccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCC
Q 001003 728 DAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSS 807 (1192)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~ 807 (1192)
...+++.+..+|.+.||++.+.+.+..... .
T Consensus 111 ----------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~----------------------- 141 (408)
T 4a11_B 111 ----------------------DTGMFTSSSFDKTLKVWDTNTLQTADVFNF----E----------------------- 141 (408)
T ss_dssp ----------------------CTTCEEEEETTSEEEEEETTTTEEEEEEEC----S-----------------------
T ss_pred ----------------------CCcEEEEEeCCCeEEEeeCCCCccceeccC----C-----------------------
Confidence 011566677799999999988665433320 0
Q ss_pred ccCCCCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEE
Q 001003 808 EEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 808 ~~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
..+..+.+...+ ....+|++...||.|.+|.+
T Consensus 142 --------------~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 142 --------------ETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp --------------SCEEEEEECSSC--SSCCEEEEEESSSSEEEEES
T ss_pred --------------CceeeeEeecCC--CCCcEEEEEcCCCeEEEEeC
Confidence 112333333332 34458888899999999986
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.61 E-value=3.5 Score=45.35 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=55.3
Q ss_pred CCcEEEEEEc------CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCccccccccccc
Q 001003 658 NSTVLSVSIA------DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWL 731 (1192)
Q Consensus 658 ~~~Iv~asi~------dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~ 731 (1192)
...|.+++++ +++++....++.|.+|........-.+..... ......|.++++..+..
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-------------- 82 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-ADADENFYTCAWTYDSN-------------- 82 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-SCTTCCEEEEEEEECTT--------------
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-cCCCCcEEEEEeccCCC--------------
Confidence 4469998887 67788899999999999875443222211111 11245677776643221
Q ss_pred ccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 732 STGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
....+++.+..+|.+.||++.+.+++.
T Consensus 83 -----------------~~~~~l~~~~~dg~i~v~d~~~~~~~~ 109 (366)
T 3k26_A 83 -----------------TSHPLLAVAGSRGIIRIINPITMQCIK 109 (366)
T ss_dssp -----------------TCCEEEEEEETTCEEEEECTTTCCEEE
T ss_pred -----------------CCCCEEEEecCCCEEEEEEchhceEee
Confidence 112478888889999999998766543
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.56 E-value=5.6 Score=47.34 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=45.0
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. ..+++.+..|++|.++..+.. .+.. +......|.++++..|
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--~~~~-----~~~h~~~v~~~~~~~~--------------------- 314 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--LLQT-----LTGHSSSVWGVAFSPD--------------------- 314 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEE-----ECCCSSCEEEEEECTT---------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--EEEE-----EecCCCCeEEEEECCC---------------------
Confidence 458887774 458888999999999975432 2221 1122446666654211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
.. +++.+..+|.+++|++..
T Consensus 315 -------------~~-~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 315 -------------GQ-TIASASDDKTVKLWNRNG 334 (577)
T ss_dssp -------------SS-EEEEEETTSCEEEEETTS
T ss_pred -------------CC-EEEEEeCCCeEEEEeCCC
Confidence 12 566778899999999754
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.40 E-value=4.4 Score=45.59 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=52.2
Q ss_pred cEEEEEE-cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 660 TVLSVSI-ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 660 ~Iv~asi-~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
.|.+++. .|.+++.+..||+|++|.++.......... .+......|.++++..|
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~--~~~~H~~~V~~v~~spd----------------------- 138 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIVSKF--CKYEHDDIVSTVSVLSS----------------------- 138 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEE--EEECCSSCEEEEEECTT-----------------------
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeec--cccCCCCCEEEEEECCC-----------------------
Confidence 3777776 467999999999999999876544322111 11123456777655211
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
.. +++.+..+|.++||.+.+.+++.
T Consensus 139 -----------g~-~l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 139 -----------GT-QAVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp -----------SS-EEEEEETTSCEEEEETTTTEEEE
T ss_pred -----------CC-EEEEEeCCCeEEEEECCCCcEEE
Confidence 12 67778889999999998766543
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.39 E-value=4 Score=44.54 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=49.0
Q ss_pred CcEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 659 STVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 659 ~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
..|.++++. ..+++-+..||+|++|.+.......... ...+......|.++++..|
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~-~~~l~~h~~~V~~~~~s~d-------------------- 97 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVVISSD-------------------- 97 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE-EEEECCCSSCEEEEEECTT--------------------
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee-eEEEeCCCCCEEEEEECCC--------------------
Confidence 458888886 2366668889999999986543211100 1112223456776655211
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+..+|.+.+|........
T Consensus 98 --------------g~-~l~s~~~d~~i~~~~~~~~~~~ 121 (340)
T 4aow_A 98 --------------GQ-FALSGSWDGTLRLWDLTTGTTT 121 (340)
T ss_dssp --------------SS-EEEEEETTSEEEEEETTTTEEE
T ss_pred --------------CC-EEEEEcccccceEEeeccccee
Confidence 12 6677778999999998775543
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.27 E-value=4.2 Score=44.17 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=50.0
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +.+++.+..||.|.+|..........+ ......|.++++..+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~------~~h~~~v~~~~~~~~--------------------- 76 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI------SGHKLGISDVAWSSD--------------------- 76 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTT---------------------
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh------ccCCCceEEEEEcCC---------------------
Confidence 458888774 568888999999999987654332221 112445666654211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
.. +++.+..+|.+.||++.+.+++.
T Consensus 77 -------------~~-~l~s~~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 77 -------------SN-LLVSASDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp -------------SS-EEEEEETTSEEEEEETTTCCEEE
T ss_pred -------------CC-EEEEECCCCEEEEEECCCCcEEE
Confidence 12 67778889999999998765543
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.12 E-value=9.2 Score=47.18 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=28.7
Q ss_pred EecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEE
Q 001003 973 TSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPL 1019 (1192)
Q Consensus 973 ~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v 1019 (1192)
..++.++|-.+.... .+++ +.....++.++++|....++.
T Consensus 580 ~~Dg~i~iwd~~~~~------~~~~-~~~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGK------KLYS-LEANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp ETTSBCEEEETTTTE------EEEC-CBCSSCEEEEEECSSSSEEEE
T ss_pred eCCCeEEEEECCCCc------eEEE-ecCCCcEEEEEEcCCCcEEEE
Confidence 446889998887654 4555 666667888999998765544
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.99 E-value=6.9 Score=45.06 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=64.2
Q ss_pred CCEEEEEec-CcEEEEeCCcc--eeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeecc
Q 001003 620 RRRVIQVFE-RGARILDGSYM--TQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQT 696 (1192)
Q Consensus 620 ~~~IvQVt~-~~vrli~~~~~--~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~ 696 (1192)
++.++=... ..|++++.... ++.+.. ....|.+++..+.+++.+..||+|.+|.+..........
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~- 236 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTLYG-----------HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM- 236 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECC-----------CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE-
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEECC-----------CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEc-
Confidence 344444443 34788875532 222211 234599999999999999999999999887654422221
Q ss_pred ccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 697 PAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 697 ~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
.....+.+++. +. . +++.+..+|.+.+|++.+.+++..
T Consensus 237 -----~~~~~v~~~~~--~~----------------------------------~-~l~~~~~dg~i~iwd~~~~~~~~~ 274 (445)
T 2ovr_B 237 -----GHVAAVRCVQY--DG----------------------------------R-RVVSGAYDFMVKVWDPETETCLHT 274 (445)
T ss_dssp -----CCSSCEEEEEE--CS----------------------------------S-CEEEEETTSCEEEEEGGGTEEEEE
T ss_pred -----CCcccEEEEEE--CC----------------------------------C-EEEEEcCCCEEEEEECCCCcEeEE
Confidence 12345655543 11 1 466777899999999877655433
No 27
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.82 E-value=5.1 Score=45.80 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecCC
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPS 688 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~ 688 (1192)
...|.++++. +.+++.+..||+|.+|..+..
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~ 60 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQE 60 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCC
Confidence 3458888885 569999999999999998654
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.76 E-value=5.7 Score=43.01 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
...|.+++.. +.+++++..||+|.+|..+........ .+......+.++++..+
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~~~~i~~~~~~~~-------------------- 152 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA----ELTSSAPACYALAISPD-------------------- 152 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE----EEECSSSCEEEEEECTT--------------------
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee----ecccCCCceEEEEECCC--------------------
Confidence 4458888885 568999999999999988764421111 11112345666554211
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
.. +++++..+|.+.+|++.+.+++.
T Consensus 153 --------------~~-~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 153 --------------SK-VCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp --------------SS-EEEEEETTSCEEEEETTTTEEEE
T ss_pred --------------CC-EEEEEeCCCcEEEEeCCCCceee
Confidence 12 56777789999999998766543
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.76 E-value=6.1 Score=43.34 Aligned_cols=149 Identities=11% Similarity=0.154 Sum_probs=79.8
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecC-CCccCeEEEecCCCEEEEEEeecCcccccccccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPL-KATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL-~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~ 1047 (1192)
++....++.+++..+..... +++. +.. ...+..++++|..+.+++++.
T Consensus 190 l~~~~~dg~i~i~d~~~~~~-----~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~------------------------- 238 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYE-----YVDS-IDLHEKSISDMQFSPDLTYFITSSR------------------------- 238 (369)
T ss_dssp EEEEETTSEEEEEETTTTTE-----EEEE-EECCSSCEEEEEECTTSSEEEEEET-------------------------
T ss_pred EEEEcCCCEEEEEECCCCcE-----eEEE-EecCCCceeEEEECCCCCEEEEecC-------------------------
Confidence 34445568899988876321 5555 554 346888999998777665431
Q ss_pred CCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccC-----c
Q 001003 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQG-----E 1122 (1192)
Q Consensus 1048 ~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g-----E 1122 (1192)
...|+++|.. +.+.+..++ ....+.++ .+. ....++++|+..... .
T Consensus 239 ---------------d~~i~v~d~~----~~~~~~~~~--~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 239 ---------------DTNSFLVDVS----TLQVLKKYE--TDCPLNTA---VIT-----PLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp ---------------TSEEEEEETT----TCCEEEEEE--CSSCEEEE---EEC-----SSSSEEEEEECCC--------
T ss_pred ---------------CceEEEEECC----CCceeeeec--CCCCceeE---Eec-----CCCceEEEeecCCCceEEEEe
Confidence 1146667653 556666555 22333333 232 234688888753311 1
Q ss_pred ccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecc-eEEeeehh
Q 001003 1123 DVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLFS 1181 (1192)
Q Consensus 1123 d~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~ 1181 (1192)
....+..|.+|++.... ....+. ...+. ...+.-.-.|.+||+|+.. .|+||-+.
T Consensus 290 ~~~~~~~i~~~d~~~~~-~~~~~~--~~~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 290 ANEGKFEARFYHKIFEE-EIGRVQ--GHFGP-LNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -----CEEEEEETTTCC-EEEEEE--CCSSC-EEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred cCCCcceeEEEecCCCc-chhhee--cccCc-EEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 12233478888864321 111111 11222 2233323478899998855 78888764
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.76 E-value=3.3 Score=47.90 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=46.8
Q ss_pred CcEEEEEEc--CC-EEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 659 STVLSVSIA--DP-YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 659 ~~Iv~asi~--dp-yvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
.+|++++.. ++ +|+.+..||+|.+|.++.......+. +......|.++++...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~----~~gH~~~V~~l~f~p~-------------------- 175 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK----GIGAGGSITGLKFNPL-------------------- 175 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC----CCSSSCCCCEEEECSS--------------------
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE----ccCCCCCEEEEEEeCC--------------------
Confidence 358888874 34 78889999999999876543321111 1112456777765210
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
... +++.+-.+|++.||++..
T Consensus 176 -------------~~~-~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 176 -------------NTN-QFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp -------------CTT-EEEEECSSSCEEEEETTS
T ss_pred -------------CCC-EEEEEeCCCEEEEeeccC
Confidence 012 566677889999999864
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.34 E-value=20 Score=47.39 Aligned_cols=113 Identities=14% Similarity=0.223 Sum_probs=73.0
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++++ +.+++.+..||+|.+|..........+. .....|.++++..|
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------~h~~~v~~~~~s~~--------------------- 668 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK------AHEDEVLCCAFSSD--------------------- 668 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTT---------------------
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec------cCCCCEEEEEEecC---------------------
Confidence 457777774 5689889999999999887654433322 23556777655211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcc
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRK 816 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1192)
.. +++.+..+|.+.||++.+.+++.....-
T Consensus 669 -------------~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~------------------------------------ 698 (1249)
T 3sfz_A 669 -------------DS-YIATCSADKKVKIWDSATGKLVHTYDEH------------------------------------ 698 (1249)
T ss_dssp -------------SS-EEEEEETTSEEEEEETTTCCEEEEEECC------------------------------------
T ss_pred -------------CC-EEEEEeCCCeEEEEECCCCceEEEEcCC------------------------------------
Confidence 12 6777888999999999876655433210
Q ss_pred cccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEE
Q 001003 817 ENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 817 ~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
...|..+ .|..+....+|..+-.||.+.+|.+
T Consensus 699 ----~~~v~~~---~~~~~~~~~~l~sg~~d~~v~vwd~ 730 (1249)
T 3sfz_A 699 ----SEQVNCC---HFTNKSNHLLLATGSNDFFLKLWDL 730 (1249)
T ss_dssp ----SSCEEEE---EECSSSSCCEEEEEETTSCEEEEET
T ss_pred ----CCcEEEE---EEecCCCceEEEEEeCCCeEEEEEC
Confidence 0123233 3333345667778888999999985
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.30 E-value=9.6 Score=43.64 Aligned_cols=75 Identities=16% Similarity=0.337 Sum_probs=50.8
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++.+. .++++.+..||+|.+|..+.....-. +......|.++++..+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~------l~~h~~~V~~v~~~~~--------------------- 161 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT------LKGHTDSVQDISFDHS--------------------- 161 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE------ECCCSSCEEEEEECTT---------------------
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE------EeccCCcEEEEEEcCC---------------------
Confidence 458888875 56888899999999998865433222 2123456777655211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+..+|.+.||++.+.+++
T Consensus 162 -------------~~-~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 162 -------------GK-LLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp -------------SS-EEEEEETTSCCCEEETTSSCEE
T ss_pred -------------CC-EEEEEeCCCeEEEEeCCCCcee
Confidence 12 6777888999999998775543
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.22 E-value=7.7 Score=42.23 Aligned_cols=111 Identities=15% Similarity=0.259 Sum_probs=71.3
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +++++.+..||+|.+|..+.....-.+. .....+.++++..+
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~------~~~~~v~~~~~~~~--------------------- 66 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ------VTETPVRAGKFIAR--------------------- 66 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE------CCSSCEEEEEEEGG---------------------
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee------ccCCcEEEEEEeCC---------------------
Confidence 347777774 6788889999999999886543321111 12345666554321
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcc
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRK 816 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1192)
. .+++.+-.+|.++||++.+.+++..... .
T Consensus 67 -------------~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~----h-------------------------------- 96 (304)
T 2ynn_A 67 -------------K-NWIIVGSDDFRIRVFNYNTGEKVVDFEA----H-------------------------------- 96 (304)
T ss_dssp -------------G-TEEEEEETTSEEEEEETTTCCEEEEEEC----C--------------------------------
T ss_pred -------------C-CEEEEECCCCEEEEEECCCCcEEEEEeC----C--------------------------------
Confidence 1 2677888899999999987665433321 0
Q ss_pred cccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEE
Q 001003 817 ENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1192)
Q Consensus 817 ~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~ 855 (1192)
...|..|.+. ...++|+.+-.||.+.+|.+
T Consensus 97 ----~~~v~~~~~~-----~~~~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 97 ----PDYIRSIAVH-----PTKPYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp ----SSCEEEEEEC-----SSSSEEEEEETTSCEEEEEG
T ss_pred ----CCcEEEEEEc-----CCCCEEEEECCCCeEEEEEC
Confidence 1124444432 34578888889999999986
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=94.05 E-value=13 Score=44.15 Aligned_cols=70 Identities=11% Similarity=0.217 Sum_probs=44.0
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. ..+++.+..||+|.+|..+. ..+.. +......|.++++..|
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--~~~~~-----~~~~~~~v~~v~~~~d--------------------- 273 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQT-----LTGHSSSVNGVAFRPD--------------------- 273 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEE-----ECCCSSCEEEEEECTT---------------------
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEE-----EecCCCCEEEEEEcCC---------------------
Confidence 347777775 46888899999999996532 22221 1112445666654211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
.. +++.+..++.+++|+...
T Consensus 274 -------------~~-~l~~~~~d~~i~~w~~~~ 293 (577)
T 2ymu_A 274 -------------GQ-TIASASDDKTVKLWNRNG 293 (577)
T ss_dssp -------------SS-EEEEEETTSCEEEEETTS
T ss_pred -------------CC-EEEEEeCCCEEEEEeCCC
Confidence 12 566778899999998643
No 35
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.89 E-value=11 Score=42.98 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=60.3
Q ss_pred cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccc
Q 001003 975 QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVD 1054 (1192)
Q Consensus 975 ~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~ 1054 (1192)
++.+||-.+.... ..+. +..+..+..+++++..+.+++++..
T Consensus 300 D~~I~iwd~~t~~------~~~~-~~~~~~v~~~~~~~~~~~lv~~sg~------------------------------- 341 (420)
T 4gga_A 300 DRHIRIWNVCSGA------CLSA-VDAHSQVCSILWSPHYKELISGHGF------------------------------- 341 (420)
T ss_dssp TCEEEEEETTTTE------EEEE-EECSSCEEEEEEETTTTEEEEEECT-------------------------------
T ss_pred CCEEEEEeCCccc------ccee-eccccceeeeeecCCCCeEEEEEec-------------------------------
Confidence 5688888776554 5677 7777888888888888877665421
Q ss_pred cccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCceEEEEE
Q 001003 1055 LHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFS 1134 (1192)
Q Consensus 1055 ~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rGRIlvfe 1134 (1192)
....|++.+.. +++.+..++= ....|++|. +. . ...+||.|. + -|.|.||+
T Consensus 342 -------~d~~I~iwd~~----~~~~v~~l~g-H~~~V~~l~---~s---p--dg~~l~S~s-----~----D~tvriWd 392 (420)
T 4gga_A 342 -------AQNQLVIWKYP----TMAKVAELKG-HTSRVLSLT---MS---P--DGATVASAA-----A----DETLRLWR 392 (420)
T ss_dssp -------TTCCEEEEETT----TCCEEEEECC-CSSCEEEEE---EC---T--TSSCEEEEE-----T----TTEEEEEC
T ss_pred -------CCCEEEEEECC----CCcEEEEEcC-CCCCEEEEE---Ec---C--CCCEEEEEe-----c----CCeEEEEE
Confidence 01246677763 6666655431 123455543 32 1 234777662 3 38899999
Q ss_pred eee
Q 001003 1135 TGR 1137 (1192)
Q Consensus 1135 v~~ 1137 (1192)
+-+
T Consensus 393 v~~ 395 (420)
T 4gga_A 393 CFE 395 (420)
T ss_dssp CSC
T ss_pred CCC
Confidence 976
No 36
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.68 E-value=9.9 Score=41.59 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=34.9
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecC-CCccCeEEEecCCCEEEEEEee
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPL-KATPHQITYFAEKNLYPLIVSV 1023 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL-~~tp~~Iay~~~~~~y~v~~s~ 1023 (1192)
++....+|.++|-.+.... .++. ++- ...++.++++|+.+.++.++..
T Consensus 288 l~s~~~dg~i~iwd~~~~~------~~~~-~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 288 LATVGSDGRFSFWDKDART------KLKT-SEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EEEEETTSCEEEEETTTTE------EEEE-CCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred EEEEccCCeEEEEECCCCc------EEEE-ecCCCCCceEEEECCCCCeEEEEecc
Confidence 4444557889999888654 5566 665 3468999999999988887653
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=93.35 E-value=12 Score=41.79 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=45.6
Q ss_pred cEEEEEEc-CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 660 TVLSVSIA-DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 660 ~Iv~asi~-dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
.|.+++.. |..++++..||+|++|.+........ ... ........|.++++..|
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~-~~~-~~~~h~~~V~~v~~spd----------------------- 150 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLLV-NKF-AKYEHDDIVKTLSVFSD----------------------- 150 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC--------CC-CCE-EECCCSSCEEEEEECSS-----------------------
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE-Eee-ccCCCCCCEEEEEECCC-----------------------
Confidence 47777764 56788899999999998755433111 110 11112446776654211
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
.. +++.+-.+|.+.||.+.+.+++.
T Consensus 151 -----------g~-~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 151 -----------GT-QAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp -----------SS-EEEEEETTSCEEEEETTTTEEEE
T ss_pred -----------CC-EEEEEeCCCeEEEEECCCCcEEE
Confidence 12 67778889999999998766543
No 38
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=93.26 E-value=13 Score=41.88 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=34.6
Q ss_pred CCcEEEEE-----ecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 966 NHGFIYVT-----SQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 966 ~~Gfi~~~-----~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+|-++++ .++.++|-.+..... ...... ++-...+..++|+|..+.+++..
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEE---PLSLQE-LDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSS---CSEEEE-CCCCSSCEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccC---CceEEe-ccCCCceeEEEEcCCCCEEEEEE
Confidence 45545544 357888888776432 234455 55566789999999988877654
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.10 E-value=12 Score=40.95 Aligned_cols=42 Identities=5% Similarity=0.158 Sum_probs=31.9
Q ss_pred EecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 973 TSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 973 ~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
..++.++|-.+.... .+++ +.....+..++++|....++.++
T Consensus 215 ~~dg~i~iwd~~~~~------~~~~-~~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 215 GKDGEIMLWNLAAKK------AMYT-LSAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp ETTCEEEEEETTTTE------EEEE-EECCSCEEEEEECSSSSEEEEEE
T ss_pred eCCCeEEEEECCCCc------EEEE-ecCCCcEEEEEEcCCCCEEEEEc
Confidence 446789998887654 5677 77777889999999887766643
No 40
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.83 E-value=25 Score=43.74 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=50.1
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++.+ +++++.+..||+|.+|.++........ +......+.++++..+
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-----~~~~~~~v~~~~~~p~--------------------- 151 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-----FEGHEHFVMCVAFNPK--------------------- 151 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-----EECCSSCEEEEEEETT---------------------
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-----EcCCCCcEEEEEEEcC---------------------
Confidence 348888874 668999999999999998764332221 1112445666654210
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
...+++.+..+|.+.+|++.+.+.
T Consensus 152 -------------~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 152 -------------DPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp -------------EEEEEEEEETTSEEEEEETTCSSC
T ss_pred -------------CCCEEEEEeCCCeEEEEECCCCcc
Confidence 123677788899999999876444
No 41
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=92.79 E-value=16 Score=41.45 Aligned_cols=117 Identities=12% Similarity=0.157 Sum_probs=71.2
Q ss_pred CCc-EEEEEe--cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccc
Q 001003 966 NHG-FIYVTS--QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVG 1042 (1192)
Q Consensus 966 ~~G-fi~~~~--~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~ 1042 (1192)
|+| .+|++. ++.+++-.+.... .++. ++.+..|+.++++|..+.+++.+.... .....
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~------~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~~~----------- 372 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKK------VQKS-IPVFDKPNTIALSPDGKYLYVSCRGPN-HPTEG----------- 372 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTE------EEEE-EECSSSEEEEEECTTSSEEEEEECCCC-CTTTC-----------
T ss_pred CCCCEEEEEecCCCEEEEEECCCCc------EEEE-ecCCCCCCeEEEcCCCCEEEEEecCCC-ccccc-----------
Confidence 555 676653 5678887776543 5677 898889999999999887777654210 00000
Q ss_pred cccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCc
Q 001003 1043 HQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGE 1122 (1192)
Q Consensus 1043 ~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gE 1122 (1192)
...--...+.|++++.. +++.+..+.. ...+.++. +. ....+|+++..
T Consensus 373 -------------~~~~g~~dg~v~~~d~~----~~~~~~~~~~--~~~~~~~~---~s-----~dg~~l~~~~~----- 420 (433)
T 3bws_A 373 -------------YLKKGLVLGKVYVIDTT----TDTVKEFWEA--GNQPTGLD---VS-----PDNRYLVISDF----- 420 (433)
T ss_dssp -------------TTSCCSSCCEEEEEETT----TTEEEEEEEC--SSSEEEEE---EC-----TTSCEEEEEET-----
T ss_pred -------------cccccccceEEEEEECC----CCcEEEEecC--CCCCceEE---Ec-----CCCCEEEEEEC-----
Confidence 00000124578899984 7788777665 33454443 32 12357777642
Q ss_pred ccccCceEEEEEee
Q 001003 1123 DVAARGRVLLFSTG 1136 (1192)
Q Consensus 1123 d~~~rGRIlvfev~ 1136 (1192)
..|.|.+|++.
T Consensus 421 ---~d~~i~v~~~~ 431 (433)
T 3bws_A 421 ---LDHQIRVYRRD 431 (433)
T ss_dssp ---TTTEEEEEEET
T ss_pred ---CCCeEEEEEec
Confidence 24899999874
No 42
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=92.69 E-value=15 Score=40.95 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCc-EEEEEe--cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 966 NHG-FIYVTS--QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 966 ~~G-fi~~~~--~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+| .+|+.. ++.+++..+.... .++. ++.+..+..++++|..+.+++..
T Consensus 167 ~dg~~l~~~~~~~~~v~~~d~~~~~------~~~~-~~~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 167 PDGTKVYVANFDSMSISVIDTVTNS------VIDT-VKVEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE------EEEE-EECSSEEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe------EEEE-EecCCCccceEECCCCCEEEEEe
Confidence 444 565554 3578887776543 5566 88888899999999888777654
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=92.61 E-value=21 Score=42.40 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=28.3
Q ss_pred EEEEecCeEEEEEcCCCCccCCccceEEEe-----cCCCccCeEEEecCCCEEEEE
Q 001003 970 IYVTSQGILKICQLPSGSTYDNYWPVQKVI-----PLKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 970 i~~~~~~~LrI~~l~~~~~~d~~~~vrk~i-----pL~~tp~~Iay~~~~~~y~v~ 1020 (1192)
+....++.+++-.+.... .+++ + .....+..++++ ..+.++.+
T Consensus 223 ~~~~~dg~i~vwd~~~~~------~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGE------FLKY-IEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp EEEETTCCEEEEETTTCC------EEEE-CCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred EEEeCCCeEEEEECCCCC------EeEE-ecccccccCCceEEEEEc-CCCEEEEE
Confidence 334556889998887654 5666 6 445567888888 55555543
No 44
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=92.21 E-value=19 Score=40.86 Aligned_cols=38 Identities=3% Similarity=-0.015 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 977 ILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 977 ~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
.+++-.+.... .++. ++.+..|..++++|+.+.+++.+
T Consensus 382 ~v~~~d~~~~~------~~~~-~~~~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 382 KVYVIDTTTDT------VKEF-WEAGNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp EEEEEETTTTE------EEEE-EECSSSEEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCc------EEEE-ecCCCCCceEEEcCCCCEEEEEE
Confidence 67766665443 5677 88888899999999988777654
No 45
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=92.20 E-value=23 Score=41.98 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred cEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 660 TVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 660 ~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
.|.++++. +.+++.+..||.|.+|.+........+.... ......|.++++. +.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~-~~-------------------- 264 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWL-DS-------------------- 264 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT--BCCCSCEEEEEES-SS--------------------
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc--cccCCceEEEEEc-CC--------------------
Confidence 58888886 4589989999999999886554422221100 0124567666553 21
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEe
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
. +++.+..+|.+.+|++.+.+++...
T Consensus 265 --------------~-~l~~~~~d~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 265 --------------Q-KFATVGADATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp --------------S-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred --------------C-EEEEEcCCCcEEEEECCCCcEEEEE
Confidence 1 6677778999999999887765444
No 46
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=92.09 E-value=35 Score=43.75 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=24.8
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecC
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDP 687 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~ 687 (1192)
..|.+++++ ..+++++..||+|++|..+.
T Consensus 489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 489 LAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred CceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence 458888886 67999999999999998764
No 47
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=91.94 E-value=17 Score=39.88 Aligned_cols=73 Identities=5% Similarity=0.079 Sum_probs=47.8
Q ss_pred cEEEEEEc--CCEEEEEEeCCcEEEEEecCCC--ceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPST--CTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 660 ~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~--~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
.|.++++. +.+++++..||+|.+|..+... .... +......|.++++..+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~------~~~h~~~v~~~~~~~~-------------------- 63 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------LKEHNGQVTGVDWAPD-------------------- 63 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE------EECCSSCEEEEEEETT--------------------
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee------ecCCCCcccEEEEeCC--------------------
Confidence 47777774 5688888899999999987653 2111 1123456776655311
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
.. +++.+..+|.+.||++.+.+.
T Consensus 64 --------------~~-~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 64 --------------SN-RIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp --------------TT-EEEEEETTSCEEEEEEETTEE
T ss_pred --------------CC-EEEEEcCCCeEEEEECCCCee
Confidence 12 566777899999999876543
No 48
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=91.42 E-value=17 Score=38.84 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=44.1
Q ss_pred CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCC
Q 001003 668 DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPL 747 (1192)
Q Consensus 668 dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1192)
+..|++++ |++|++|..+...+ +.... +......|.++++..+
T Consensus 36 ~~~lAvg~-D~tV~iWd~~tg~~-~~~~~---~~~~~~~V~~v~~~~~-------------------------------- 78 (318)
T 4ggc_A 36 GNVLAVAL-DNSVYLWSASSGDI-LQLLQ---MEQPGEYISSVAWIKE-------------------------------- 78 (318)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCE-EEEEE---CCSTTCCEEEEEECTT--------------------------------
T ss_pred CCEEEEEe-CCEEEEEECCCCCE-EEEEE---ecCCCCeEEEEEECCC--------------------------------
Confidence 44566665 89999998765543 22111 1112445777655311
Q ss_pred CCCcEEEEEEecCCeEEEEECCCceeeEEe
Q 001003 748 DQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 748 ~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
.. +++.+..+|.+.||++.+.+++...
T Consensus 79 --~~-~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 79 --GN-YLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp --SS-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred --CC-EEEEEECCCcEEEeecCCceeEEEe
Confidence 12 6778888999999999987765444
No 49
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=91.25 E-value=32 Score=41.62 Aligned_cols=83 Identities=20% Similarity=0.137 Sum_probs=51.3
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeecccc-ccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPA-AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~-~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
..|.++++. +.+++.+..||+|++|.+......-.+.... ........|.++++..|
T Consensus 191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-------------------- 250 (611)
T 1nr0_A 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-------------------- 250 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT--------------------
T ss_pred CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC--------------------
Confidence 458888874 5688889999999999876543322211100 00012445666654211
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
.. +++.+-.+|.++||++.+.+++..
T Consensus 251 --------------g~-~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 251 --------------GT-KIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp --------------SS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred --------------CC-EEEEEeCCCeEEEEeCCCCceeee
Confidence 12 667778899999999988666543
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=91.12 E-value=23 Score=39.79 Aligned_cols=80 Identities=8% Similarity=0.154 Sum_probs=54.3
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
...|.+++.. +.+++.+..||+|.+|.+........+ ......|.++++..+
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~~~-------------------- 192 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------IGHRATVTDIAIIDR-------------------- 192 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------ECCSSCEEEEEEETT--------------------
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------cCCCCcEEEEEEcCC--------------------
Confidence 3458888884 568999999999999998755432222 123456776655311
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEee
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVD 778 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~ 778 (1192)
.. +++.+..+|.+.||++.+.+.+....
T Consensus 193 --------------~~-~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 193 --------------GR-NVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp --------------TT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred --------------CC-EEEEEcCCCcEEEeECCCCceeEEee
Confidence 12 56677789999999998877665543
No 51
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.11 E-value=21 Score=39.39 Aligned_cols=143 Identities=12% Similarity=0.149 Sum_probs=78.5
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccC
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNH 1048 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~ 1048 (1192)
++....++.++|-.+..... ..+.. .+....+..++++|+.+.++.++..
T Consensus 142 l~s~s~dg~i~~wd~~~~~~----~~~~~-~~~~~~i~~~~~~pdg~~lasg~~d------------------------- 191 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQ----YIVHS-AKSDVEYSSGVLHKDSLLLALYSPD------------------------- 191 (343)
T ss_dssp EEEEETTCCEEEEESSSSCE----EEEEC-CCSSCCCCEEEECTTSCEEEEECTT-------------------------
T ss_pred EEEEeCCCcEEEEECCCCcE----EEEEe-cCCCCceEEEEECCCCCEEEEEcCC-------------------------
Confidence 44455678999999886542 22222 3444568899999988776664311
Q ss_pred CCCccccccCcceeeeEEEEEcCCCCCCCceee-eeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccC
Q 001003 1049 NLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTR-ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1127 (1192)
Q Consensus 1049 ~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~i-d~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~r 1127 (1192)
..|++.|.. +.+.+ ..++......|+++ .+. ....+|+.|. .
T Consensus 192 ---------------g~i~iwd~~----~~~~~~~~~~~~h~~~v~~l---~fs-----~~g~~l~s~~----------~ 234 (343)
T 3lrv_A 192 ---------------GILDVYNLS----SPDQASSRFPVDEEAKIKEV---KFA-----DNGYWMVVEC----------D 234 (343)
T ss_dssp ---------------SCEEEEESS----CTTSCCEECCCCTTSCEEEE---EEC-----TTSSEEEEEE----------S
T ss_pred ---------------CEEEEEECC----CCCCCccEEeccCCCCEEEE---EEe-----CCCCEEEEEe----------C
Confidence 146677664 33333 33333223444444 443 1246888884 2
Q ss_pred ceEEEEEeeeCCC--CCceeE-eecccCcccccchhcccCceEEEee--cceEEeeeh
Q 001003 1128 GRVLLFSTGRNAD--NPQNLV-LSGSYGPLFSSVQIDFASHFFAICS--NSFVFVFLF 1180 (1192)
Q Consensus 1128 GRIlvfev~~~~~--~~e~~~-~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~ 1180 (1192)
|.|.||++..... ..+... +...... ..+.-+-.|++||+|+ .+.++||-|
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGT--VTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CC--EEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCCCcceeecccccccccccc--eEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 3799999864211 111100 0011111 1122456799999987 568888866
No 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.87 E-value=20 Score=38.75 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=50.4
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
...|.++++. +.+++.+..||+|.+|..+............ .....|.++++..+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~-------------------- 67 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFIDN-------------------- 67 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEEEEES--------------------
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee---ecCCceEEEEECCC--------------------
Confidence 3458888874 6799999999999999987654211111111 12456776655311
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEEC-CCce
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDV-PNFN 772 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sL-P~~~ 772 (1192)
...+++.+..+|.+.+|++ ...+
T Consensus 68 --------------~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 68 --------------TDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp --------------SSEEEEEEETTSCEEEECSSSSSS
T ss_pred --------------CCcEEEEEcCCCeEEEEEeccCCc
Confidence 2325667778999999998 6643
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.87 E-value=24 Score=39.49 Aligned_cols=82 Identities=20% Similarity=0.103 Sum_probs=50.4
Q ss_pred CcEEEEEEc---CCEEEEEEeCCcEEEEEecCCC------ceEeeccccccccCCCceeEEEeeccCCCCCccccccccc
Q 001003 659 STVLSVSIA---DPYVLLGMSDGSIRLLVGDPST------CTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDA 729 (1192)
Q Consensus 659 ~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~------~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~ 729 (1192)
..|.++++. +.+++.+..||+|.+|.+.... ...... ........+.++++..+
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~-------------- 176 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG---QSMSSVDEVISLAWNQS-------------- 176 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC---CSCCSSCCCCEEEECSS--------------
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc---cccCCCCCeeEEEeCCC--------------
Confidence 357777775 5688888889999999876543 111110 11112345555544211
Q ss_pred ccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEe
Q 001003 730 WLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
...+++.+..+|.+.||++...+++...
T Consensus 177 --------------------~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 204 (416)
T 2pm9_A 177 --------------------LAHVFASAGSSNFASIWDLKAKKEVIHL 204 (416)
T ss_dssp --------------------CTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred --------------------CCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence 1126777888999999999886665443
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=90.62 E-value=21 Score=38.46 Aligned_cols=75 Identities=13% Similarity=0.253 Sum_probs=49.5
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++.. +.+++.+..||+|.+|.++.......+.. ....|.++++..+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~--------------------- 118 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG------HSNYVFCCNFNPQ--------------------- 118 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC------CSSCEEEEEECSS---------------------
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC------CCCCEEEEEEcCC---------------------
Confidence 347777774 56888899999999998876544222211 2445666544211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+..+|.+.||.+.+.+.+
T Consensus 119 -------------~~-~l~s~~~d~~i~iwd~~~~~~~ 142 (312)
T 4ery_A 119 -------------SN-LIVSGSFDESVRIWDVKTGKCL 142 (312)
T ss_dssp -------------SS-EEEEEETTSCEEEEETTTCCEE
T ss_pred -------------CC-EEEEEeCCCcEEEEECCCCEEE
Confidence 12 5677888999999999876554
No 55
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=90.09 E-value=27 Score=38.85 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred EEEEEe----cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 969 FIYVTS----QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 969 fi~~~~----~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
++++.. ++.+++-.+.... .++. ++.+..|..++++|..+.+++.+
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~~~------~~~~-~~~~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGTNK------ITAR-IPVGPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTTTE------EEEE-EECCSSEEEEEECTTSSEEEEEE
T ss_pred EEEEEecCcCCCcEEEEECCCCe------EEEE-EecCCCccEEEEccCCCEEEEEc
Confidence 566654 4677777766543 5677 99888899999999988766654
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.77 E-value=30 Score=38.97 Aligned_cols=145 Identities=5% Similarity=0.020 Sum_probs=80.9
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEec-CCCccCeEEEecCCCEEEEEEeecCcccccccccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIP-LKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ip-L~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~ 1047 (1192)
++....++.++|-.+.... ++++ +. -...+..++++|..+.+++..+-.
T Consensus 232 l~s~~~d~~v~iwd~~~~~------~~~~-~~~~~~~v~~~~~~p~~~~ll~~~~gs----------------------- 281 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSI------PKFT-KTNHNAAVKAVAWCPWQSNLLATGGGT----------------------- 281 (401)
T ss_dssp EEEEETTSCEEEEETTCSS------EEEE-ECCCSSCCCEEEECTTSTTEEEEECCT-----------------------
T ss_pred EEEEeCCCeEEEccCCCCC------ccEE-ecCCcceEEEEEECCCCCCEEEEecCC-----------------------
Confidence 4444556899999887644 5555 53 445689999999776555543210
Q ss_pred CCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccC
Q 001003 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1127 (1192)
Q Consensus 1048 ~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~r 1127 (1192)
....|++++.. +.+.+..++. ...+.++ .+. ....++++.++ ...
T Consensus 282 --------------~d~~i~i~d~~----~~~~~~~~~~--~~~v~~~---~~s-----~~~~~l~~~~g-------~~d 326 (401)
T 4aez_A 282 --------------MDKQIHFWNAA----TGARVNTVDA--GSQVTSL---IWS-----PHSKEIMSTHG-------FPD 326 (401)
T ss_dssp --------------TTCEEEEEETT----TCCEEEEEEC--SSCEEEE---EEC-----SSSSEEEEEEC-------TTT
T ss_pred --------------CCCEEEEEECC----CCCEEEEEeC--CCcEEEE---EEC-----CCCCeEEEEee-------cCC
Confidence 01256677764 4455555543 3344444 332 12356666432 236
Q ss_pred ceEEEEEeeeCCCCCceeE-eecccCcccccchhcccCceEEEeecc-eEEeeehh
Q 001003 1128 GRVLLFSTGRNADNPQNLV-LSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLFS 1181 (1192)
Q Consensus 1128 GRIlvfev~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~ 1181 (1192)
|.|.||++... ...... ...-.+.+.+ +.-.-.|+.+|+++.. .|++|-..
T Consensus 327 g~i~v~~~~~~--~~~~~~~~~~h~~~v~~-~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 327 NNLSIWSYSSS--GLTKQVDIPAHDTRVLY-SALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CEEEEEEEETT--EEEEEEEEECCSSCCCE-EEECTTSSEEEEECTTSEEEEEECC
T ss_pred CcEEEEecCCc--cceeEEEecCCCCCEEE-EEECCCCCEEEEEeCCCcEEEEECC
Confidence 89999998641 111111 1111223332 3333568888888765 78888654
No 57
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=89.64 E-value=28 Score=38.35 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=29.4
Q ss_pred EEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEE
Q 001003 972 VTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPL 1019 (1192)
Q Consensus 972 ~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v 1019 (1192)
...++.++|-.+.... .+.+. .+.+..+..++++|..+.+++
T Consensus 231 gs~dg~v~iwd~~~~~-----~~~~~-~~~~~~v~~v~~sp~~~~la~ 272 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLT-----YPQRE-FDAGSTINQIAFNPKLQWVAV 272 (343)
T ss_dssp EETTCEEEEEESSCCS-----SCSEE-EECSSCEEEEEECSSSCEEEE
T ss_pred EcCCCeEEEEECCCCc-----cccee-ecCCCcEEEEEECCCCCEEEE
Confidence 3446889998874332 25566 667778999999998775543
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.23 E-value=35 Score=39.01 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCcEEEEEEc-CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 658 NSTVLSVSIA-DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 658 ~~~Iv~asi~-dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
...|.+++.. +.+++.+..||+|.+|.++........ ......|.++++....
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~h~~~v~~l~~~~~~-------------------- 215 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF------EGHNSTVRCLDIVEYK-------------------- 215 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEEEESS--------------------
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEE------CCCCCccEEEEEecCC--------------------
Confidence 3458888886 458888999999999998755332221 1234567776553111
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
...+++.+..+|.+.+|++++....
T Consensus 216 -------------~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 216 -------------NIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp -------------SCEEEEEEETTSCEEEEECCCCCCC
T ss_pred -------------CCCEEEEEcCCCcEEEeeCCCCccc
Confidence 1247778888999999999875543
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.17 E-value=31 Score=38.22 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecC-CCccCeEEEecCCCEEEEEE
Q 001003 964 NCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPL-KATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 964 ~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL-~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
.+...+++...++.+++-.+.... ++++ +.- ...+..++++|..+.++.+.
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~~------~~~~-~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSGE------QITM-LKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTCC------EEEE-ECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEecCCEEEEEECcCCc------ceee-eccCCCeEEEEEEcCCCCEEEEEC
Confidence 345677888888999999887654 5666 653 34678999999988777654
No 60
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=89.14 E-value=29 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=49.1
Q ss_pred CcEEEEEEc------CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccc
Q 001003 659 STVLSVSIA------DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLS 732 (1192)
Q Consensus 659 ~~Iv~asi~------dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~ 732 (1192)
..|.+++.. ..+++-+..||+|++|..+.....+.. .+......|.++.+..+
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~----~l~gh~~~v~~~~~~~~----------------- 91 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW----SLEGHQLGVVSVDISHT----------------- 91 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE----EECCCSSCEEEEEECSS-----------------
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee----eeccCCCCEEEEEECCC-----------------
Confidence 347777764 347888889999999988654332211 12122445665543211
Q ss_pred cCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 733 TGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
. .+++.+-.+|.++||++.+.+++..
T Consensus 92 -----------------~-~~l~s~s~D~~i~lWd~~~~~~~~~ 117 (321)
T 3ow8_A 92 -----------------L-PIAASSSLDAHIRLWDLENGKQIKS 117 (321)
T ss_dssp -----------------S-SEEEEEETTSEEEEEETTTTEEEEE
T ss_pred -----------------C-CEEEEEeCCCcEEEEECCCCCEEEE
Confidence 1 2566777899999999988665433
No 61
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.88 E-value=34 Score=38.35 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecC-CCccCeEEEecCCCEEEEEEeecCcccccccccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPL-KATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL-~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~ 1047 (1192)
|+....++.++|-.+.... -+++. +.- ...+..|+++|..+.++.+...
T Consensus 221 l~sgs~D~~v~~wd~~~~~-----~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D------------------------ 270 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITS-----RAVRT-YHGHEGDINSVKFFPDGQRFGTGSDD------------------------ 270 (380)
T ss_dssp EEEEETTSCEEEEETTTTC-----CCCEE-ECCCSSCCCEEEECTTSSEEEEECSS------------------------
T ss_pred EEEEECCCeEEEEECCCCC-----cceEE-ECCcCCCeEEEEEecCCCeEEEEcCC------------------------
Confidence 4444557899998876432 14455 443 3358899999988766553211
Q ss_pred CCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCC------cceEEEEEEEeccccCCCCceEEEEEeccccC
Q 001003 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSS------ENALTVRVVTLFNTTTKENETLLAIGTAYVQG 1121 (1192)
Q Consensus 1048 ~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~------E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g 1121 (1192)
..|++.|.. +.+.+..+..... ..++++ .+. ....+|+.|.
T Consensus 271 ----------------~~i~lwd~~----~~~~~~~~~~~~~~~~~~~~~v~~~---~~s-----~~g~~l~~g~----- 317 (380)
T 3iz6_a 271 ----------------GTCRLFDMR----TGHQLQVYNREPDRNDNELPIVTSV---AFS-----ISGRLLFAGY----- 317 (380)
T ss_dssp ----------------SCEEEEETT----TTEEEEEECCCCSSSCCSSCSCSEE---EEC-----SSSSEEEEEC-----
T ss_pred ----------------CeEEEEECC----CCcEEEEecccccccccccCceEEE---EEC-----CCCCEEEEEE-----
Confidence 134455542 2233333332211 123433 332 1246888884
Q ss_pred cccccCceEEEEEeeeCCCCCceeEe--ecccCcccccchhcccCceEEEeecc-eEEeeehhhheee
Q 001003 1122 EDVAARGRVLLFSTGRNADNPQNLVL--SGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLFSFLRSL 1186 (1192)
Q Consensus 1122 Ed~~~rGRIlvfev~~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 1186 (1192)
..|.|+||++.... ...++.. ..-.+.+ +.+.-.-.|..||+|+.. .|+||-++=-|.+
T Consensus 318 ----~dg~i~vwd~~~~~-~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~i 379 (380)
T 3iz6_a 318 ----SNGDCYVWDTLLAE-MVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379 (380)
T ss_dssp ----TTSCEEEEETTTCC-EEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTTSCEEEEECCSSSSC
T ss_pred ----CCCCEEEEECCCCc-eEEEEecccCCCCCce-EEEEECCCCCEEEEeeCCCCEEEEecCCCccc
Confidence 46899999974311 0001100 0011112 223223478899998865 8999988765543
No 62
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=88.40 E-value=31 Score=37.27 Aligned_cols=105 Identities=10% Similarity=0.152 Sum_probs=65.1
Q ss_pred CccccCCcEEEEeeCCCCEEEEEecCcEEEEeCCcc--eeeeecCCCCCCCCCCCCCCcEEEEEE--cCCEEEEEEeCCc
Q 001003 604 DYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYM--TQDLSFGPSNSESGSGSENSTVLSVSI--ADPYVLLGMSDGS 679 (1192)
Q Consensus 604 gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~~~--~q~i~~~~~~~e~~~~~~~~~Iv~asi--~dpyvlv~~~dg~ 679 (1192)
.|..+++.|++|.. + ..||+++.... +..+.. ....|.++.+ ...+++.+..|++
T Consensus 20 ~fsp~~~~l~s~~~-d---------g~v~lWd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 20 DFHPTEPWVLTTLY-S---------GRVELWNYETQVEVRSIQV-----------TETPVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp EECSSSSEEEEEET-T---------SEEEEEETTTTEEEEEEEC-----------CSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred EECCCCCEEEEEcC-C---------CcEEEEECCCCceeEEeec-----------cCCcEEEEEEeCCCCEEEEECCCCE
Confidence 45667777777765 2 34666665432 222222 1223666666 4679999999999
Q ss_pred EEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEec
Q 001003 680 IRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYE 759 (1192)
Q Consensus 680 i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 759 (1192)
|++|..........+. .....|.++++..+ .. +++.+-.
T Consensus 79 i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~----------------------------------~~-~l~sgs~ 117 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFE------AHPDYIRSIAVHPT----------------------------------KP-YVLSGSD 117 (304)
T ss_dssp EEEEETTTCCEEEEEE------CCSSCEEEEEECSS----------------------------------SS-EEEEEET
T ss_pred EEEEECCCCcEEEEEe------CCCCcEEEEEEcCC----------------------------------CC-EEEEECC
Confidence 9999887654433322 23456777655211 12 5677888
Q ss_pred CCeEEEEECCC
Q 001003 760 SGALEIFDVPN 770 (1192)
Q Consensus 760 ~g~l~I~sLP~ 770 (1192)
+|.++||++.+
T Consensus 118 D~~v~lWd~~~ 128 (304)
T 2ynn_A 118 DLTVKLWNWEN 128 (304)
T ss_dssp TSCEEEEEGGG
T ss_pred CCeEEEEECCC
Confidence 99999999865
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.01 E-value=32 Score=37.09 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=42.6
Q ss_pred CceeEEecccCCCCCCcEEEEEecCeEEEEEcCC-CCccCCccceEEEecCCCccCeEEEec-CCCEEEEEE
Q 001003 952 GSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPS-GSTYDNYWPVQKVIPLKATPHQITYFA-EKNLYPLIV 1021 (1192)
Q Consensus 952 ~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~-~~~~d~~~~vrk~ipL~~tp~~Iay~~-~~~~y~v~~ 1021 (1192)
+.+.+++- .|++++..+.++.+++..+.. .. ..+.... .+....++.++++| ..+.+++++
T Consensus 151 ~~v~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 151 NKIFTMDT-----NSSRLIVGMNNSQVQWFRLPLCED---DNGTIEE-SGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp CCEEEEEE-----CSSEEEEEESTTEEEEEESSCCTT---CCCEEEE-CSCSSCEEEEEECSGGGCEEEEEE
T ss_pred CceEEEEe-----cCCcEEEEeCCCeEEEEECCcccc---ccceeee-cCCCCceeEEEECCCCCCEEEEEe
Confidence 45655553 366777777788999999886 32 1234455 66677899999999 888777654
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.85 E-value=38 Score=37.70 Aligned_cols=42 Identities=7% Similarity=0.173 Sum_probs=27.8
Q ss_pred EecCeEEEEEcCCCCccCCccceEEEecCCC-ccCeEEEecCCCEEEEEE
Q 001003 973 TSQGILKICQLPSGSTYDNYWPVQKVIPLKA-TPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 973 ~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~-tp~~Iay~~~~~~y~v~~ 1021 (1192)
..++.++|-.+.... .+++ +.... .+..|+|+|..+.|++..
T Consensus 246 ~~d~~i~~wd~~~~~------~~~~-~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 246 DETGNVSLVNIKNPD------SAQT-SAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp ESSSCEEEEESSCGG------GCEE-ECCCSSCEEEEEECSSSSCCEEEE
T ss_pred ecccceeEEECCCCc------EeEE-EeccceeEEEEEEcCCCCCEEEEE
Confidence 456789988876543 5566 65433 578889988776555533
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=87.60 E-value=44 Score=38.10 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCEEEEEecC-cEEEEeCCc--ceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeec
Q 001003 619 GRRRVIQVFER-GARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQ 695 (1192)
Q Consensus 619 ~~~~IvQVt~~-~vrli~~~~--~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~ 695 (1192)
+++.++=.... .|++++... .++.+.. ....|.+++..+.+++.+..||+|.+|.+..........
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----------h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 250 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECC-----------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-----------CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeee
Confidence 44444444433 478887543 2222211 234599999999999999999999999886543311000
Q ss_pred cccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 696 TPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 696 ~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
.+......|.+++. + .. +++.+..+|.+.||++.+.+++.
T Consensus 251 ---~~~~~~~~v~~~~~--~----------------------------------~~-~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 251 ---VLVGHRAAVNVVDF--D----------------------------------DK-YIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp ---EECCCSSCEEEEEE--E----------------------------------TT-EEEEEETTSEEEEEETTTCCEEE
T ss_pred ---EecCCCCcEEEEEe--C----------------------------------CC-EEEEEeCCCeEEEEECCcCcEEE
Confidence 11112344555443 1 11 67778889999999998766654
Q ss_pred Ee
Q 001003 776 TV 777 (1192)
Q Consensus 776 ~~ 777 (1192)
..
T Consensus 291 ~~ 292 (435)
T 1p22_A 291 TL 292 (435)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=87.37 E-value=32 Score=36.38 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=47.4
Q ss_pred CcEEEEEE-cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 659 STVLSVSI-ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 659 ~~Iv~asi-~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
..|.+++. .+.+++.+..||.|.+|..+......... .....+.++++..+
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~---------------------- 70 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY------TGQGFLNSVCYDSE---------------------- 70 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE------ECSSCEEEEEEETT----------------------
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee------cCCccEEEEEECCC----------------------
Confidence 45777776 46689999999999999986543221111 12456776655311
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
.. +++.+..+|.+.+|.+.+
T Consensus 71 ------------~~-~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 71 ------------KE-LLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp ------------TT-EEEEEETTSCEEEEETTC
T ss_pred ------------CC-EEEEecCCCeEEEEEeee
Confidence 12 677788899999999865
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=86.66 E-value=37 Score=36.25 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=50.6
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
...|.++++. +.+++.+..||+|.+|.++......+... .+......|.++++....
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~------------------- 69 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD--SWRAHDSSIVAIDWASPE------------------- 69 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE--EEECCSSCEEEEEECCGG-------------------
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc--eeccCCCcEEEEEEcCCC-------------------
Confidence 3458888874 66899999999999999875433222111 122235567776653110
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCc
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNF 771 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~ 771 (1192)
...+++.+..+|.+.||++...
T Consensus 70 --------------d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 70 --------------YGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp --------------GCSEEEEEETTSCEEEEEECTT
T ss_pred --------------CCCEEEEEcCCCeEEEEecCCC
Confidence 0126777788999999998764
No 68
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=86.64 E-value=38 Score=36.42 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=27.3
Q ss_pred EEEEecCeEEEEEcCCCCccCCccceEEEec-CCCccCeEEEecCCCEEEEE
Q 001003 970 IYVTSQGILKICQLPSGSTYDNYWPVQKVIP-LKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 970 i~~~~~~~LrI~~l~~~~~~d~~~~vrk~ip-L~~tp~~Iay~~~~~~y~v~ 1020 (1192)
+....++.+++-.+.... .+++ +. -...+..|+++|+.+.++.+
T Consensus 189 ~s~~~d~~i~i~d~~~~~------~~~~-~~~h~~~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCK------LKTN-HIGHTGYLNTVTVSPDGSLCASG 233 (340)
T ss_dssp EEEETTSCEEEEETTTTE------EEEE-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEcCCCEEEEEECCCCc------eeeE-ecCCCCcEEEEEECCCCCEEEEE
Confidence 333446788888777543 3444 33 23357888999887766554
No 69
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.07 E-value=34 Score=37.53 Aligned_cols=151 Identities=8% Similarity=-0.010 Sum_probs=79.9
Q ss_pred EEEEEecCeEEEEEcCCCC---ccCCccceEEEecCC--CccCeEEEec--CCCEEEEEEeecCcccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGS---TYDNYWPVQKVIPLK--ATPHQITYFA--EKNLYPLIVSVPVLKPLNQVLSLLIDQEV 1041 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~---~~d~~~~vrk~ipL~--~tp~~Iay~~--~~~~y~v~~s~~~~~~~~~~~~~~~~ee~ 1041 (1192)
++....++.+++....... .+...-.+++ ..++ ..+..++++| ..+.++.++..
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~d------------------ 148 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLRE-IEVDSANEIIYMYGHNEVNTEYFIWADNR------------------ 148 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEE-EECCCSSCEEEEECCC---CCEEEEEETT------------------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEE-eecCCCCCEEEEEcCCCCCCCEEEEEeCC------------------
Confidence 5555667788888766432 1111122455 5554 3477788888 55554443211
Q ss_pred ccccccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccC
Q 001003 1042 GHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQG 1121 (1192)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g 1121 (1192)
..|++.|.. +.+.+..+.......++|+. +. ....+||+|+
T Consensus 149 ----------------------g~i~~wd~~----~~~~~~~~~~~~~~~i~~~~---~~-----pdg~~lasg~----- 189 (343)
T 3lrv_A 149 ----------------------GTIGFQSYE----DDSQYIVHSAKSDVEYSSGV---LH-----KDSLLLALYS----- 189 (343)
T ss_dssp ----------------------CCEEEEESS----SSCEEEEECCCSSCCCCEEE---EC-----TTSCEEEEEC-----
T ss_pred ----------------------CcEEEEECC----CCcEEEEEecCCCCceEEEE---EC-----CCCCEEEEEc-----
Confidence 135555543 22333222233333455443 32 1246899984
Q ss_pred cccccCceEEEEEeeeCCCCCceeEeecccCcccccchhcccCceEEEeecceEEeeehhhh
Q 001003 1122 EDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFL 1183 (1192)
Q Consensus 1122 Ed~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 1183 (1192)
.-|.|.||++......+.++.. .-.....++.-.-+|..||+++...|+||-..-.
T Consensus 190 ----~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~ 245 (343)
T 3lrv_A 190 ----PDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKD 245 (343)
T ss_dssp ----TTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSS
T ss_pred ----CCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC
Confidence 5689999999753221122221 0112233344234789999999888998875543
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=85.84 E-value=51 Score=37.15 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.2
Q ss_pred CcEEEEEEcC----CEEEEEEeCCcEEEEEecC
Q 001003 659 STVLSVSIAD----PYVLLGMSDGSIRLLVGDP 687 (1192)
Q Consensus 659 ~~Iv~asi~d----pyvlv~~~dg~i~~l~~d~ 687 (1192)
..|.+++... .+++.+..||+|.+|.+..
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence 3477777742 5788899999999998754
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=85.66 E-value=51 Score=36.95 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=52.8
Q ss_pred CCcEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEee-ccccccccCCCceeEEEeeccCCCCCccccccccccccc
Q 001003 658 NSTVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSV-QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLST 733 (1192)
Q Consensus 658 ~~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~-~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~ 733 (1192)
...|.+++.+ +.+++.+..||+|.+|.+......... .....+......|.++++..+
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~------------------ 142 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT------------------ 142 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS------------------
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC------------------
Confidence 4569998884 568888999999999998764221000 001112223455666654211
Q ss_pred CccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 734 GVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
...+++.+..+|.+.||.+.+.+.+..
T Consensus 143 ----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~ 169 (402)
T 2aq5_A 143 ----------------AQNVLLSAGCDNVILVWDVGTGAAVLT 169 (402)
T ss_dssp ----------------BTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ----------------CCCEEEEEcCCCEEEEEECCCCCccEE
Confidence 112677788899999999987665433
No 72
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.61 E-value=55 Score=37.30 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=79.8
Q ss_pred EEEEecCeEEEEEcCCCCccCCccceEEEec-CCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccC
Q 001003 970 IYVTSQGILKICQLPSGSTYDNYWPVQKVIP-LKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNH 1048 (1192)
Q Consensus 970 i~~~~~~~LrI~~l~~~~~~d~~~~vrk~ip-L~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~ 1048 (1192)
+....++.++|-.+..... .-++.. +. -...++.|+++|..+.+++..+.
T Consensus 248 ~s~~~dg~i~i~d~~~~~~---~~~~~~-~~~~~~~v~~i~~~p~~~~~l~tg~~------------------------- 298 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNT---SKPSHT-VDAHTAEVNCLSFNPYSEFILATGSA------------------------- 298 (430)
T ss_dssp EEEETTSEEEEEETTCSCS---SSCSEE-EECCSSCEEEEEECSSCTTEEEEEET-------------------------
T ss_pred EEEeCCCeEEEEECCCCCC---CcceeE-eecCCCCeEEEEeCCCCCCEEEEEeC-------------------------
Confidence 3344578999998886521 124555 53 34568999999987744433221
Q ss_pred CCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccCc
Q 001003 1049 NLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARG 1128 (1192)
Q Consensus 1049 ~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~rG 1128 (1192)
.+.|++++.... -+.+..+.-. ...|.++ .+. ...+.+|+.|. .-|
T Consensus 299 --------------dg~v~vwd~~~~---~~~~~~~~~h-~~~v~~i---~~s----p~~~~~l~s~~---------~d~ 344 (430)
T 2xyi_A 299 --------------DKTVALWDLRNL---KLKLHSFESH-KDEIFQV---QWS----PHNETILASSG---------TDR 344 (430)
T ss_dssp --------------TSEEEEEETTCT---TSCSEEEECC-SSCEEEE---EEC----SSCTTEEEEEE---------TTS
T ss_pred --------------CCeEEEEeCCCC---CCCeEEeecC-CCCEEEE---EEC----CCCCCEEEEEe---------CCC
Confidence 113556665310 1223333321 2334444 332 12245777774 348
Q ss_pred eEEEEEeeeCC----------CCCceeEeecccCcccccchhcccCc-eEEEeecc-eEEeeeh
Q 001003 1129 RVLLFSTGRNA----------DNPQNLVLSGSYGPLFSSVQIDFASH-FFAICSNS-FVFVFLF 1180 (1192)
Q Consensus 1129 RIlvfev~~~~----------~~~e~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~-~~~~~~~ 1180 (1192)
+|.||++.... +.++.+..+..-+.-.+.+.-.-+|+ ++|+|+.. .|.||-.
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 99999997621 12355554433333333344345677 77777755 6788754
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=84.50 E-value=49 Score=35.81 Aligned_cols=117 Identities=10% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCcEEEEEEcC------CEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCccccccccccc
Q 001003 658 NSTVLSVSIAD------PYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWL 731 (1192)
Q Consensus 658 ~~~Iv~asi~d------pyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~ 731 (1192)
...|.+++.+. .+++.+..||+|.+|..+.......+. .....|.++++..+.
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~--------------- 127 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV------GHGNAINELKFHPRD--------------- 127 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE------SCCSCEEEEEECSSC---------------
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec------CCCCcEEEEEECCCC---------------
Confidence 34588887753 489999999999999876543322221 134567776553100
Q ss_pred ccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCC
Q 001003 732 STGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGT 811 (1192)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 811 (1192)
.. +++.+..+|.+.||++.+.+.+.....+.
T Consensus 128 ------------------~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------ 158 (366)
T 3k26_A 128 ------------------PN-LLLSVSKDHALRLWNIQTDTLVAIFGGVE------------------------------ 158 (366)
T ss_dssp ------------------TT-EEEEEETTSCEEEEETTTTEEEEEECSTT------------------------------
T ss_pred ------------------CC-EEEEEeCCCeEEEEEeecCeEEEEecccc------------------------------
Confidence 12 67777889999999998766554432110
Q ss_pred CCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEEEe
Q 001003 812 GQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1192)
Q Consensus 812 ~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~~~ 856 (1192)
.....|..+.+. ....+|+..-.||.|.+|.+.
T Consensus 159 -------~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 159 -------GHRDEVLSADYD-----LLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp -------SCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEESC
T ss_pred -------cccCceeEEEEC-----CCCCEEEEecCCCCEEEEECC
Confidence 001234444432 234578888889999999874
No 74
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=84.29 E-value=91 Score=38.72 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=48.9
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++++ +.+++.+..||+|.+|..+..+.... . .+......|.++++..+.
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-~---~l~~h~~~V~~l~~s~~~-------------------- 65 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-D---TLTGHEGPVWRVDWAHPK-------------------- 65 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-E---EECCCSSCEEEEEECCTT--------------------
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-e---eccCCcCceEEEEecCCC--------------------
Confidence 347777764 56888899999999998864332211 1 122234567776653211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCce
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFN 772 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~ 772 (1192)
...+++.+..+|.+.||++.+.+
T Consensus 66 -------------~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 66 -------------FGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp -------------SCSEEEEEETTSCEEEEEEETTE
T ss_pred -------------CCCEEEEEeCCCeEEEEECCCCc
Confidence 01267778889999999986643
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=83.67 E-value=38 Score=38.39 Aligned_cols=78 Identities=8% Similarity=0.030 Sum_probs=51.2
Q ss_pred CcEEEEEEc----CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 659 STVLSVSIA----DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 659 ~~Iv~asi~----dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
..++++... +.+++.+..||+|.+|.+........+..+. ....|.++++-.+
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----h~~~v~~~~~s~~------------------- 225 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP----RHGAVSSICIDEE------------------- 225 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG----GGCCEEEEEECTT-------------------
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC----CCCceEEEEECCC-------------------
Confidence 346666643 6788889999999999886654433322210 1345776654211
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeE
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVF 775 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~ 775 (1192)
..+++.+..+|.+.||++...+++.
T Consensus 226 ----------------~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 226 ----------------CCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp ----------------SCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----------------CCEEEEEcCCCeEEEEEcCCccEEE
Confidence 1377888889999999998755543
No 76
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=83.58 E-value=58 Score=36.29 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=49.6
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +.+++.+..|++|++|.+........+ +......|.++++-.|
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-----~~gH~~~V~~v~fSpd--------------------- 323 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-----KQAHSFAITEVTISPD--------------------- 323 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-----TTSSSSCEEEEEECTT---------------------
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-----cCcccCCEEEEEECCC---------------------
Confidence 348888874 569999999999999987654332221 1123456887765211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
. .+++-+-.+++++||++|.
T Consensus 324 -------------g-~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 324 -------------S-TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -------------S-CEEEEEETTSEEEEEECCT
T ss_pred -------------C-CEEEEEeCCCeEEEEEcCC
Confidence 1 2677788899999999985
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=83.48 E-value=65 Score=36.38 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=45.6
Q ss_pred CcEEEEEEcC---CEEEEEEeCCcEEEEEecC---CCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccc
Q 001003 659 STVLSVSIAD---PYVLLGMSDGSIRLLVGDP---STCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLS 732 (1192)
Q Consensus 659 ~~Iv~asi~d---pyvlv~~~dg~i~~l~~d~---~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~ 732 (1192)
..|.++++.. .+++.+..||+|.+|.+.. ... .. ....+. ....|.++++..+
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~--~~~~~~-h~~~v~~~~~~~~----------------- 122 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-YS--SSLTYD-CSSTVTQITMIPN----------------- 122 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-CS--CSEEEE-CSSCEEEEEECTT-----------------
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-cc--eeeecc-CCCCEEEEEEeCC-----------------
Confidence 3588888754 5888899999999998754 211 10 000111 2456776655311
Q ss_pred cCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 001003 733 TGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1192)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP 769 (1192)
. .+++.+..+|.+.||++.
T Consensus 123 -----------------~-~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 123 -----------------F-DAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp -----------------S-SEEEEEETTSEEEEEEEE
T ss_pred -----------------C-CEEEEEeCCCEEEEEEec
Confidence 1 267778889999999984
No 78
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=83.09 E-value=69 Score=36.44 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCcEEEEEEc--CC-EEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 658 NSTVLSVSIA--DP-YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 658 ~~~Iv~asi~--dp-yvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
...|.+++.+ ++ +++.+..||+|.+|.+......+. .+......|.++++..+
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~-----~~~~h~~~v~~i~~sp~------------------- 332 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH-----SFESHKDEIFQVQWSPH------------------- 332 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-----EEECCSSCEEEEEECSS-------------------
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-----EeecCCCCEEEEEECCC-------------------
Confidence 3458888885 44 567788899999998865322111 11112445666654211
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
...+++.+..+|.+.||.+..
T Consensus 333 ---------------~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 ---------------NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---------------CTTEEEEEETTSCCEEEEGGG
T ss_pred ---------------CCCEEEEEeCCCcEEEEeCCC
Confidence 123677788899999999865
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=82.91 E-value=48 Score=36.48 Aligned_cols=50 Identities=12% Similarity=0.370 Sum_probs=30.5
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEec--CCCccCeEEEecCCCEEEEEEe
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIP--LKATPHQITYFAEKNLYPLIVS 1022 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ip--L~~tp~~Iay~~~~~~y~v~~s 1022 (1192)
++....++.++|..+..... .+..+. +. -...+..++++|..+.++.++.
T Consensus 115 l~~~~~d~~i~iwd~~~~~~---~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 115 FAVGSGARVISVCYFEQEND---WWVSKH-LKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp CEEEESSSCEEECCC--------CCCCEE-ECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred EEEEecCCeEEEEEECCccc---ceeeeE-eecccCCCeEEEEEcCCCCEEEEEeC
Confidence 45556677888877766542 123455 55 3557899999998887776554
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=82.72 E-value=96 Score=37.83 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=44.9
Q ss_pred cEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 660 ~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
.|.+++++ +.+++.+..||+|++|.+........ +......|.++++..+
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~------~~~h~~~v~~~~~s~~---------------------- 483 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR------FVGHTKDVLSVAFSLD---------------------- 483 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------EECCSSCEEEEEECTT----------------------
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE------EeCCCCCEEEEEEeCC----------------------
Confidence 46666663 56888888999999998865433222 1123456777765311
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP 769 (1192)
.. +++.+-.+|+++||++.
T Consensus 484 ------------~~-~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 484 ------------NR-QIVSASRDRTIKLWNTL 502 (694)
T ss_dssp ------------SS-CEEEEETTSCEEEECTT
T ss_pred ------------CC-EEEEEeCCCEEEEEECC
Confidence 11 46677789999999864
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.57 E-value=60 Score=35.34 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=16.3
Q ss_pred EEEEEecCCeEEEEECCCce
Q 001003 753 YSVVCYESGALEIFDVPNFN 772 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~~~ 772 (1192)
+++++..+|.+.||++.+.+
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~ 41 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNK 41 (372)
T ss_dssp EEEEECSSSEEEEEEEETTE
T ss_pred EEEEEeCCCEEEEEeCCCCc
Confidence 67778789999999987654
No 82
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=82.41 E-value=60 Score=35.28 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=49.5
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++++ +.+++.+..||+|.+|.++..+..... .+......|.++++..+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~-------------------- 67 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID----TLTGHEGPVWRVDWAHPK-------------------- 67 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE----EECCCSSCEEEEEECCGG--------------------
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee----EecCCCCcEEEEEeCCCC--------------------
Confidence 348888775 678998999999999998743332211 121234567766552111
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCce
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFN 772 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~ 772 (1192)
...+++.+..+|.+.||++.+.+
T Consensus 68 -------------~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 68 -------------FGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp -------------GCSEEEEEETTSCEEEEEEETTE
T ss_pred -------------CCCEEEEeccCCEEEEEEcCCCc
Confidence 01267777889999999987644
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=80.45 E-value=70 Score=34.74 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=49.2
Q ss_pred CcEEEEEEc---------------CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCccc
Q 001003 659 STVLSVSIA---------------DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLR 723 (1192)
Q Consensus 659 ~~Iv~asi~---------------dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~ 723 (1192)
..|.+++.. +.+++.+..||+|.+|.+........... .+......|.++++..+.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~------- 218 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSPTV------- 218 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE--EECCCSSCEEEEEECCCC-------
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE--EEecccCcEeEEEECCCC-------
Confidence 347877775 46888899999999998865433211111 121224456666542110
Q ss_pred ccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCc
Q 001003 724 KTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNF 771 (1192)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~ 771 (1192)
....+++.+..+|.+.||++.+.
T Consensus 219 -------------------------~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 219 -------------------------LLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp -------------------------SSSEEEEEEETTSCEEEEEESST
T ss_pred -------------------------CCCCeEEEEeCCCEEEEEeCCCC
Confidence 00247778888999999998763
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=80.27 E-value=36 Score=37.55 Aligned_cols=73 Identities=8% Similarity=0.065 Sum_probs=41.5
Q ss_pred EEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccc
Q 001003 661 VLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEA 738 (1192)
Q Consensus 661 Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 738 (1192)
|.+++++ +.+++.+..||+|.+|.++....... ..+......|.++++..+
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~----~~~~~h~~~v~~~~~s~~----------------------- 66 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA----RTFSDHDKIVTCVDWAPK----------------------- 66 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC----CCBCCCSSCEEEEEECTT-----------------------
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE----EEEecCCceEEEEEEeCC-----------------------
Confidence 5555554 56788788899999999875421111 112223456776654211
Q ss_pred ccCCCCCCCCCCcEEEEEEecCCeEEEEECCCce
Q 001003 739 IDGADGGPLDQGDIYSVVCYESGALEIFDVPNFN 772 (1192)
Q Consensus 739 ~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~ 772 (1192)
. .+++.+..+|.+.||++.+.+
T Consensus 67 -----------~-~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 67 -----------S-NRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp -----------T-CCEEEEETTSSEEEC------
T ss_pred -----------C-CEEEEEeCCCeEEEEEcCCCC
Confidence 1 256777789999999987644
No 85
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=79.64 E-value=70 Score=34.23 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCc-EEEEEe--cCeEEEEEcCCCCccCCccc--eEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 966 NHG-FIYVTS--QGILKICQLPSGSTYDNYWP--VQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 966 ~~G-fi~~~~--~~~LrI~~l~~~~~~d~~~~--vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+| ++|+.. ++.+++..+....++. ... ... .+.+..|+.++++|+.+.++++.
T Consensus 138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 138 PDNRTLWVPALKQDRICLFTVSDDGHLV-AQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEE-EEEEEEEE-CSTTCCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEecCCCCEEEEEEecCCCcee-eecccccc-cCCCCCcceEEECCCCCEEEEEe
Confidence 444 677764 5788888887633221 011 234 55677899999999988655543
No 86
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=78.61 E-value=56 Score=39.06 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=33.8
Q ss_pred EEEEEec-CeEEEEEc--CCCCccCCccceEEEecCCCccCeEEEec----CCCEEEEEE
Q 001003 969 FIYVTSQ-GILKICQL--PSGSTYDNYWPVQKVIPLKATPHQITYFA----EKNLYPLIV 1021 (1192)
Q Consensus 969 fi~~~~~-~~LrI~~l--~~~~~~d~~~~vrk~ipL~~tp~~Iay~~----~~~~y~v~~ 1021 (1192)
++|+.+. +.+++-.+ .... .+++ ++.+..|+.|+++| +.+.++++.
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~------~~~~-i~~g~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPT------KVAE-IKIGIEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCE------EEEE-EECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECcCCCCc------EEEE-EecCCCcceEEeCCCcCCCCCEEEEEE
Confidence 6666554 57777777 3222 5778 99999999999999 888777654
No 87
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=78.33 E-value=83 Score=34.36 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=46.3
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++.. +.+++.+..||+|++|..........+. .....+.++++..+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------~~~~~v~~~~~s~~--------------------- 108 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP------LRSSWVMTCAYAPS--------------------- 108 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------CSSSCEEEEEECTT---------------------
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee------cCCccEEEEEECCC---------------------
Confidence 347777764 4588889999999999876544322211 12345665544211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCc
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNF 771 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~ 771 (1192)
.. +++.+..+|.+.||.+...
T Consensus 109 -------------~~-~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 109 -------------GN-YVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp -------------SS-EEEEEETTCEEEEEETTTC
T ss_pred -------------CC-EEEEEeCCCeEEEEECccC
Confidence 12 6677778999999998763
No 88
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=75.30 E-value=1e+02 Score=33.93 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=31.1
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecCCC-ccCeEEEecCCCEEEEEE
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKA-TPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~-tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+....++.+++-.+.... .++. +.... .+..++++|..+.++.+.
T Consensus 213 l~sgs~Dg~v~~wd~~~~~------~~~~-~~~h~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQ------CVQA-FETHESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp EEEEETTSCEEEEETTTCC------EEEE-ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCc------EEEE-ecCCCCCeEEEEEeCCCCEEEEEe
Confidence 4444556889998887654 4566 65433 578899999887666543
No 89
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=74.89 E-value=1.1e+02 Score=33.84 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=27.5
Q ss_pred ecCeEEEEEcCCCCccCCccceEEEecC-CCccCeEEEecCCCEEEEEE
Q 001003 974 SQGILKICQLPSGSTYDNYWPVQKVIPL-KATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 974 ~~~~LrI~~l~~~~~~d~~~~vrk~ipL-~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
.++.++|-.+.... .+.. +.- ...+..++++|+.+.++.+.
T Consensus 304 ~d~~i~vwd~~~~~------~~~~-l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 304 NDYTINVWDVLKGS------RVSI-LFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp TTSCEEEEETTTCS------EEEE-ECCCSSCEEEEEECTTSSCEEEEE
T ss_pred CCCcEEEEECCCCc------eEEE-EECCCCcEEEEEECCCCCEEEEEc
Confidence 35789998876554 3444 432 33588899999888766654
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=74.83 E-value=1.1e+02 Score=33.80 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=46.8
Q ss_pred CCcEEEEEEcC---CEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 658 NSTVLSVSIAD---PYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 658 ~~~Iv~asi~d---pyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
...|.+++... .+++.+..||+|.+|.+... ......... .....+.++++..+
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~---~~~~~v~~~~~~~~------------------- 174 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTD---SWDYWYCCVDVSVS------------------- 174 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCC---CSSCCEEEEEEETT-------------------
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccC---CCCCCeEEEEECCC-------------------
Confidence 45689988854 68888889999999988742 211111111 11345666654311
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP 769 (1192)
.. +++.+..+|.+.+|.+.
T Consensus 175 ---------------~~-~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 175 ---------------RQ-MLATGDSTGRLLLLGLD 193 (383)
T ss_dssp ---------------TT-EEEEEETTSEEEEEETT
T ss_pred ---------------CC-EEEEECCCCCEEEEECC
Confidence 12 67778889999999983
No 91
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=72.49 E-value=1.3e+02 Score=33.85 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=50.6
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +.+++.+..||+|.+|......+... +......|.++++..+
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------~~~h~~~V~~v~~~p~--------------------- 203 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT------MHGHDHNVSSVSIMPN--------------------- 203 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC------CCCCSSCEEEEEECSS---------------------
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE------EcCCCCCEEEEEEeCC---------------------
Confidence 458888874 56888899999999998765433221 1123456777655311
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+-.+|.+.+|.+.+..++
T Consensus 204 -------------~~-~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 204 -------------GD-HIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp -------------SS-EEEEEETTSEEEEEETTTCCEE
T ss_pred -------------CC-EEEEEeCCCeEEEEECCCCcEE
Confidence 12 5667778999999999875554
No 92
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=72.32 E-value=1.2e+02 Score=33.41 Aligned_cols=137 Identities=6% Similarity=0.053 Sum_probs=71.1
Q ss_pred EEEecCeEEEEEcCCCCccCCccceEEEecCC---CccCeEEEecCCCEEEEEEeecCcccccccccccccccccccccc
Q 001003 971 YVTSQGILKICQLPSGSTYDNYWPVQKVIPLK---ATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1192)
Q Consensus 971 ~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~---~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~ 1047 (1192)
-...++.++|-.+.... ++++ +... ..+..++++|....+++..+.
T Consensus 187 s~s~D~~v~iwd~~~~~------~~~~-~~~~~~~~~~~~~~~~p~~~~~l~sg~~------------------------ 235 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPK------PASQ-IGCSAPGYLPTSLAWHPQQSEVFVFGDE------------------------ 235 (344)
T ss_dssp EEETTSCEEEEETTSSS------CEEE-CC----CCCEEEEEECSSCTTEEEEEET------------------------
T ss_pred eeccccccccccccccc------eeee-eecceeeccceeeeecCCCCcceEEecc------------------------
Confidence 33446889988776554 4455 4322 246677888765544443221
Q ss_pred CCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCcccccC
Q 001003 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1127 (1192)
Q Consensus 1048 ~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~~~r 1127 (1192)
-..|++.|.. +.+.+..++-. ...|.++ .+. .....|||.|. .-
T Consensus 236 ---------------dg~v~~wd~~----~~~~~~~~~~h-~~~v~~v---~fs----p~g~~~lasgs---------~D 279 (344)
T 4gqb_B 236 ---------------NGTVSLVDTK----STSCVLSSAVH-SQCVTGL---VFS----PHSVPFLASLS---------ED 279 (344)
T ss_dssp ---------------TSEEEEEESC----C--CCEEEECC-SSCEEEE---EEC----SSSSCCEEEEE---------TT
T ss_pred ---------------CCcEEEEECC----CCcEEEEEcCC-CCCEEEE---EEc----cCCCeEEEEEe---------CC
Confidence 1246677764 44555444422 2344444 342 12245777773 34
Q ss_pred ceEEEEEeeeCCCCCceeEeecccCcccccchhcc--cC-ceEEEeec-ceEEeeehh
Q 001003 1128 GRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDF--AS-HFFAICSN-SFVFVFLFS 1181 (1192)
Q Consensus 1128 GRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~-~~~a~~~~-~~~~~~~~~ 1181 (1192)
|.|.||++.. . +......--+.+. ++. | .| .++|+|+. ..|++|...
T Consensus 280 ~~i~vwd~~~--~--~~~~~~~H~~~V~-~v~--~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 280 CSLAVLDSSL--S--ELFRSQAHRDFVR-DAT--WSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SCEEEECTTC--C--EEEEECCCSSCEE-EEE--ECSSSTTEEEEEETTSCEEEEECC
T ss_pred CeEEEEECCC--C--cEEEEcCCCCCEE-EEE--EeCCCCeEEEEEcCCCeEEEEECC
Confidence 7899998643 1 2222111122333 343 5 34 58889985 588888653
No 93
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=70.85 E-value=55 Score=34.95 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=29.0
Q ss_pred cCeEEEEEcCCCCccCCccceEEEecCCC---ccCeEEEecCCCEEEEE
Q 001003 975 QGILKICQLPSGSTYDNYWPVQKVIPLKA---TPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 975 ~~~LrI~~l~~~~~~d~~~~vrk~ipL~~---tp~~Iay~~~~~~y~v~ 1020 (1192)
++.+++-.+.... .+++ ++++. .|+.++++|..+.+++.
T Consensus 10 ~~~v~~~d~~~~~------~~~~-~~~~~~~~~~~~~~~s~dg~~l~v~ 51 (337)
T 1pby_B 10 PDKLVVIDTEKMA------VDKV-ITIADAGPTPMVPMVAPGGRIAYAT 51 (337)
T ss_dssp TTEEEEEETTTTE------EEEE-EECTTCTTCCCCEEECTTSSEEEEE
T ss_pred CCeEEEEECCCCc------EEEE-EEcCCCCCCccceEEcCCCCEEEEE
Confidence 4677776665433 5677 88888 79999999998766654
No 94
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=68.77 E-value=1.4e+02 Score=32.59 Aligned_cols=153 Identities=8% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCcEEEEEecC-eEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccc
Q 001003 966 NHGFIYVTSQG-ILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQ 1044 (1192)
Q Consensus 966 ~~Gfi~~~~~~-~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~ 1044 (1192)
.++.+|++..+ .=+|..++... .-.+++ ++++..|+.|++++..+.|++..... ++. .
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t----~~~~~~-i~~g~~p~~i~~~~dG~l~v~~~~~~-------------~~~---~ 197 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTET----DKVVDE-LTIGIQPTSLVMDKYNKMWTITDGGY-------------EGS---P 197 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTT----TEEEEE-EECSSCBCCCEECTTSEEEEEBCCBC-------------TTC---S
T ss_pred ECCEEEEEcCCCCCEEEEEECCC----CeEEEE-EEcCCCccceEEcCCCCEEEEECCCc-------------cCC---c
Confidence 35667777531 22344444321 125677 99999999999999888766632110 000 0
Q ss_pred cccCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccCccc
Q 001003 1045 IDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDV 1124 (1192)
Q Consensus 1045 ~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~gEd~ 1124 (1192)
+. .+...|..+|+. +.+....+.+..+..+..+.. . ...+.+++.. .
T Consensus 198 ~~--------------~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~---~----~d~~~lyv~~-~------- 244 (328)
T 3dsm_A 198 YG--------------YEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQL---N----GTRDTLYWIN-N------- 244 (328)
T ss_dssp SC--------------BCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEE---C----TTSCEEEEES-S-------
T ss_pred cc--------------cCCceEEEEECC----CCeEEEEEecCCCCCceeEEE---e----cCCCEEEEEc-c-------
Confidence 00 124578899985 778888888877666665543 1 1123333321 1
Q ss_pred ccCceEEEEEeeeCCCCCce-eEeecccCcccccchhc-ccCceEEEe-----ecceEEeee
Q 001003 1125 AARGRVLLFSTGRNADNPQN-LVLSGSYGPLFSSVQID-FASHFFAIC-----SNSFVFVFL 1179 (1192)
Q Consensus 1125 ~~rGRIlvfev~~~~~~~e~-~~~~~~~~~~~~~~~~~-~~~~~~a~~-----~~~~~~~~~ 1179 (1192)
.|++|+.... +... ...... +.....+..| ..|.+.+++ .++.|.+|-
T Consensus 245 ----~v~~~d~~t~--~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 ----DIWRMPVEAD--RVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp ----SEEEEETTCS--SCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred ----EEEEEECCCC--ceeeeeeecCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 6888877431 1111 000000 1222333345 478888887 345676664
No 95
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=68.02 E-value=1.4e+02 Score=32.42 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=46.8
Q ss_pred cEEEEEE--cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 660 TVLSVSI--ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 660 ~Iv~asi--~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
.|.++++ .+.+++.+..|+.|.+|.+.......... ..+......+.++.+..+
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~---------------------- 154 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS--RELAGHTGYLSCCRFLDD---------------------- 154 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE--EEEECCSSCEEEEEEEET----------------------
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE--EEecCCCccEEEEEECCC----------------------
Confidence 4777776 46689999999999999876532211110 112122345555543211
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
. .++.+-.+|.+.||++.+.+++
T Consensus 155 -------------~-~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 155 -------------N-QIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp -------------T-EEEEEETTSCEEEEETTTTEEE
T ss_pred -------------C-cEEEEECCCcEEEEECCCCcEE
Confidence 1 2556677899999999876654
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=67.90 E-value=1.2e+02 Score=31.67 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=34.3
Q ss_pred CceeEEecccCCCCCCc-EEEEEecCeEEEEEcCCCCccCCccceEEEecCCC-ccCeEEEecCCC
Q 001003 952 GSIVAFTVLHNVNCNHG-FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKA-TPHQITYFAEKN 1015 (1192)
Q Consensus 952 ~~v~~~t~F~~~~c~~G-fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~-tp~~Iay~~~~~ 1015 (1192)
++|.+++- + |+| ++....++.++|-.+.... .++. +.... .+..++++|..+
T Consensus 226 ~~i~~~~~-~----~~~~l~~~~~dg~v~iwd~~~~~------~~~~-~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 226 SFVYCIKL-L----PNGDIVSCGEDRTVRIWSKENGS------LKQV-ITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp SCEEEEEE-C----TTSCEEEEETTSEEEEECTTTCC------EEEE-EECSSSCEEEEEECTTSC
T ss_pred ceEEEEEE-e----cCCCEEEEecCCEEEEEECCCCc------eeEE-EeccCceEEEEEEccCCC
Confidence 45555543 2 333 4555557889988877654 5566 66555 688999999888
No 97
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=67.81 E-value=1.4e+02 Score=32.32 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=47.4
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. .++++.+..|++|++|.+........+.. ....+.++++..
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~------~~~~~~~~~~sp---------------------- 132 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA------GPVDAWTLAFSP---------------------- 132 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC------CTTCCCCEEECT----------------------
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC------CCccEEEEEECC----------------------
Confidence 448887774 46788888899999998765433211111 122333333211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
... +++.+..+|.+.||.+.+.+..+.
T Consensus 133 ------------dg~-~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 133 ------------DSQ-YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp ------------TSS-EEEEECTTSEEEEEETTTCSEEEE
T ss_pred ------------CCC-EEEEEcCCCcEEEEEcCCCceeEE
Confidence 112 677788899999999987655433
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=65.86 E-value=1.8e+02 Score=32.93 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=32.1
Q ss_pred cEEEEEe--cCeEEEEEc--CCCCccCCccceEEEecCCCccCeEEEecCCCEEEE
Q 001003 968 GFIYVTS--QGILKICQL--PSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPL 1019 (1192)
Q Consensus 968 Gfi~~~~--~~~LrI~~l--~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v 1019 (1192)
.++++.. ++.++|..+ ....++ ..+++ ++....+..++++| .+.++.
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l---~~~~~-~~~~~~v~~~~~~~-~~~~v~ 370 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDL---ALKQI-ITFPYNVISLSAHN-DEFQVT 370 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCE---EEEEE-EECSSCEEEEEEET-TEEEEE
T ss_pred CEEEEEECCCCeEEEEEeccCCCCce---eeccE-eccCCceEEEEecC-CcEEEE
Confidence 3566654 578999999 333221 36677 88888899999999 344443
No 99
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=65.38 E-value=1.3e+02 Score=32.75 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=27.9
Q ss_pred EEEEEec--CeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEE
Q 001003 969 FIYVTSQ--GILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPL 1019 (1192)
Q Consensus 969 fi~~~~~--~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v 1019 (1192)
.+|+... +.+.+....... .+++ ++.+..|+.|+++++.++|+.
T Consensus 55 ~lyv~~~~~~~v~viD~~t~~------~~~~-i~~~~~p~~i~~~~~g~lyv~ 100 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINTFK------EVGR-ITGFTSPRYIHFLSDEKAYVT 100 (328)
T ss_dssp EEEEEEGGGTEEEEEETTTCC------EEEE-EECCSSEEEEEEEETTEEEEE
T ss_pred EEEEEEcCCCEEEEEECcccE------EEEE-cCCCCCCcEEEEeCCCeEEEE
Confidence 3555443 344444443332 5677 888889999999887765554
No 100
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=64.40 E-value=1.8e+02 Score=32.25 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=49.6
Q ss_pred CCcEEEEEEc---CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 658 NSTVLSVSIA---DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 658 ~~~Iv~asi~---dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
...|.++++. +.+++.+..||+|.+|.+......+. .+......|.++++..+
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~-----~~~~h~~~v~~v~~~p~------------------- 260 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR-----TYHGHEGDINSVKFFPD------------------- 260 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE-----EECCCSSCCCEEEECTT-------------------
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE-----EECCcCCCeEEEEEecC-------------------
Confidence 4568888874 45788888999999998753222111 11122445666654211
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
.. +++.+-.+|.++||.+.+.+.+
T Consensus 261 ---------------~~-~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 261 ---------------GQ-RFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp ---------------SS-EEEEECSSSCEEEEETTTTEEE
T ss_pred ---------------CC-eEEEEcCCCeEEEEECCCCcEE
Confidence 12 5677888999999999876554
No 101
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=62.56 E-value=2e+02 Score=32.14 Aligned_cols=41 Identities=7% Similarity=0.158 Sum_probs=30.7
Q ss_pred cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 975 QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 975 ~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
++.++|-.+..... .... ...+..++.+++||+.+.+++++
T Consensus 338 Dg~V~lwd~~~~~~-----~~~~-~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 338 HGLIQLINTYEKDS-----NSIP-IQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp TTEEEEEETTCTTC-----CEEE-EECSSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEECCCCcE-----EEEe-cCCCCcEEEEEEcCCCCEEEEEe
Confidence 57888888776542 3334 55667899999999999988865
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=62.27 E-value=1.7e+02 Score=31.28 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=47.0
Q ss_pred CcEEEEEEc-----CCEEEEEEeCCcEEEEEecCCCce--EeeccccccccCCCceeEEEeeccCCCCCccccccccccc
Q 001003 659 STVLSVSIA-----DPYVLLGMSDGSIRLLVGDPSTCT--VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWL 731 (1192)
Q Consensus 659 ~~Iv~asi~-----dpyvlv~~~dg~i~~l~~d~~~~~--l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~ 731 (1192)
..|.++++. +.+++++..||.|.+|.+...... +... .+......|.++++..+
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---------------- 270 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQVRHLPQ---------------- 270 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCEEEEEEETT----------------
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCEEEEEECCC----------------
Confidence 358888885 478888999999999987542211 1110 01122445665544211
Q ss_pred ccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 732 STGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
...+++.+..+|.+.||.+..
T Consensus 271 ------------------~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 271 ------------------NRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp ------------------EEEEEEEEETTSEEEEEEEEC
T ss_pred ------------------CCcEEEEEeCCCcEEEeecCC
Confidence 123677788899999999865
No 103
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=61.20 E-value=1.8e+02 Score=31.26 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=45.7
Q ss_pred cEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 660 ~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
.|.++++. +.+++.+..||+|++|.+........ +......|.++++..+
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~------~~~h~~~v~~~~~~~~---------------------- 118 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR------FVGHKSDVMSVDIDKK---------------------- 118 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------EECCSSCEEEEEECTT----------------------
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE------EccCCCcEEEEEEcCC----------------------
Confidence 47766663 56888888999999998865433222 1123456776654211
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
. .+++.+-.+|.++||.+..
T Consensus 119 ------------~-~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 119 ------------A-SMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp ------------S-CEEEEEETTSCEEEEETTS
T ss_pred ------------C-CEEEEEeCCCeEEEEECCC
Confidence 1 2566777899999999854
No 104
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=61.10 E-value=65 Score=37.16 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.8
Q ss_pred ceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 994 PVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 994 ~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
+..+ ++++..++.+++++..+.++|+.
T Consensus 85 ~~~~-~~~~~~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 85 QGLL-VPMKFPIHHLALSCDNLTLSACM 111 (434)
T ss_dssp CCEE-ECCSSCEEEEEECTTSCEEEEEE
T ss_pred cccc-ccCCCcccEEEEcCCCCEEEEEE
Confidence 4466 88888899999999988877653
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=55.17 E-value=3.7e+02 Score=33.04 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=37.0
Q ss_pred ceEEEEEeccccCcccccCceEEEEEeeeCCCCCc-eeEeecccCcccccchhcccCceEEEeecc-eEEeeehh
Q 001003 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ-NLVLSGSYGPLFSSVQIDFASHFFAICSNS-FVFVFLFS 1181 (1192)
Q Consensus 1109 ~~ylaVGTa~~~gEd~~~rGRIlvfev~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~ 1181 (1192)
..+|+.|. ..|.|.+|++........ ..............+.-.-.|..+|+|+.. .|++|-+.
T Consensus 219 ~~~l~s~s---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 219 RSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SEEEEEEE---------SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCEEEEEe---------cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 46888874 368999999976321111 111111223333334333578888887655 78888765
No 106
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=54.87 E-value=1.7e+02 Score=30.66 Aligned_cols=22 Identities=0% Similarity=0.119 Sum_probs=18.1
Q ss_pred hcccCceEEEeecceEEeeehh
Q 001003 1160 IDFASHFFAICSNSFVFVFLFS 1181 (1192)
Q Consensus 1160 ~~~~~~~~a~~~~~~~~~~~~~ 1181 (1192)
.+-.|.+++++..+.|++|.+.
T Consensus 258 ~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 258 LMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp EETTTEEEEEETTTEEEEEECS
T ss_pred ECCCCcEEEECCCCeEEEEEcc
Confidence 4568999999888899999764
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=54.37 E-value=1.2e+02 Score=38.79 Aligned_cols=108 Identities=8% Similarity=0.126 Sum_probs=66.8
Q ss_pred CccccCCcEEEEeeCCCCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEc-CCEEEEEEeCCcEEE
Q 001003 604 DYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIA-DPYVLLGMSDGSIRL 682 (1192)
Q Consensus 604 gF~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~-dpyvlv~~~dg~i~~ 682 (1192)
.|..++..|++|.. + ..||+++.......... . ....|.++++. +.+++.+..|++|.+
T Consensus 24 afspdg~~lAsgs~-D---------g~I~lw~~~~~~~~~~~-------~---~~~~V~~l~fspg~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 24 AFDFTQNLLAIATV-T---------GEVHIYGQQQVEVVIKL-------E---DRSAIKEMRFVKGIYLVVINAKDTVYV 83 (902)
T ss_dssp EEETTTTEEEEEET-T---------SEEEEECSTTCEEEEEC-------S---SCCCEEEEEEETTTEEEEEETTCEEEE
T ss_pred EECCCCCEEEEEeC-C---------CEEEEEeCCCcEEEEEc-------C---CCCCEEEEEEcCCCEEEEEECcCeEEE
Confidence 45567778888876 2 23666654432111111 0 22348887765 557888889999999
Q ss_pred EEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCe
Q 001003 683 LVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGA 762 (1192)
Q Consensus 683 l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~ 762 (1192)
|.++...+..... ....|.++++..+ ..+++++..+|.
T Consensus 84 Wd~~~~~~~~~~~-------~~~~V~~v~~sp~-----------------------------------g~~l~sgs~dg~ 121 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-------VPGKITSIDTDAS-----------------------------------LDWMLIGLQNGS 121 (902)
T ss_dssp EETTTCSEEEEEE-------CSSCEEEEECCTT-----------------------------------CSEEEEEETTSC
T ss_pred EECCCCcEEEEEc-------CCCCEEEEEECCC-----------------------------------CCEEEEEcCCCc
Confidence 9987654422221 1345666644211 127888889999
Q ss_pred EEEEECCCcee
Q 001003 763 LEIFDVPNFNC 773 (1192)
Q Consensus 763 l~I~sLP~~~~ 773 (1192)
+.+|++...++
T Consensus 122 V~lwd~~~~~~ 132 (902)
T 2oaj_A 122 MIVYDIDRDQL 132 (902)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCcc
Confidence 99999988654
No 108
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=53.34 E-value=3.5e+02 Score=32.17 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=23.6
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecC
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDP 687 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~ 687 (1192)
..|.++++. +.|++.+..||+|++|....
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 90 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCC
Confidence 358888874 56999999999999998754
No 109
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=52.42 E-value=1.8e+02 Score=30.83 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred ccccCCcEEEEeeCCCCEEEEEecCcEEEEeCC----cceeeeecCCCCCCCCCCCCCCcEEEEEEc----CCEEEEEEe
Q 001003 605 YFVQGRTIAAGNLFGRRRVIQVFERGARILDGS----YMTQDLSFGPSNSESGSGSENSTVLSVSIA----DPYVLLGMS 676 (1192)
Q Consensus 605 F~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~----~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~----dpyvlv~~~ 676 (1192)
|..++..|+.|.. ...||+++.. ..++.+.- ....|.+++.+ +.+++-+..
T Consensus 17 ~s~~g~~las~s~----------D~~v~iw~~~~~~~~~~~~l~g-----------H~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 17 MDYYGKRMATCSS----------DKTIKIFEVEGETHKLIDTLTG-----------HEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp ECTTSSEEEEEET----------TSCEEEEEBCSSCBCCCEEECC-----------CSSCEEEEEECCGGGCSEEEEEET
T ss_pred ECCCCCEEEEEeC----------CCEEEEEecCCCCcEEEEEEcc-----------ccCCeEEEEecCCCcCCEEEEEcC
Q ss_pred CCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEE
Q 001003 677 DGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVV 756 (1192)
Q Consensus 677 dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 756 (1192)
||+|+++.+..... .....+......|.++++..+. ...+++.
T Consensus 76 D~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~---------------------------------~g~~l~s 118 (297)
T 2pm7_B 76 DGKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHE---------------------------------YGPMLLV 118 (297)
T ss_dssp TTEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGG---------------------------------GCSEEEE
T ss_pred CCEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCC---------------------------------CCcEEEE
Q ss_pred EecCCeEEEEECCC
Q 001003 757 CYESGALEIFDVPN 770 (1192)
Q Consensus 757 ~~~~g~l~I~sLP~ 770 (1192)
+..+|.+.||.+.+
T Consensus 119 ~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 119 ASSDGKVSVVEFKE 132 (297)
T ss_dssp EETTSEEEEEEBCS
T ss_pred EECCCcEEEEEecC
No 110
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=52.13 E-value=3e+02 Score=31.00 Aligned_cols=91 Identities=13% Similarity=0.236 Sum_probs=51.3
Q ss_pred eEEEEcCC--CCeEEEEe--CCceEEEecCCCCceeEEe--cccCCCCCCcE---------EEEEec----CeEEEEEcC
Q 001003 924 QGFFLSGS--RPCWCMVF--RERLRVHPQLCDGSIVAFT--VLHNVNCNHGF---------IYVTSQ----GILKICQLP 984 (1192)
Q Consensus 924 ~gVF~~G~--rP~wi~~~--~g~l~~~p~~~~~~v~~~t--~F~~~~c~~Gf---------i~~~~~----~~LrI~~l~ 984 (1192)
.+|++--. ..+||+.+ ++.|..+-+ .-..+..+. .+||+..-.|| +|++.. +.|++..|+
T Consensus 29 pavw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 29 PAIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp EEEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred ccEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 35555332 22345543 355666665 223333332 45777665565 455553 478999997
Q ss_pred CCCccCCccceEEEe-----cCC---CccCeEEE--ecCCC-EEEEEE
Q 001003 985 SGSTYDNYWPVQKVI-----PLK---ATPHQITY--FAEKN-LYPLIV 1021 (1192)
Q Consensus 985 ~~~~~d~~~~vrk~i-----pL~---~tp~~Iay--~~~~~-~y~v~~ 1021 (1192)
+... +++. + |++ .+|.-+++ .+.++ .|+.++
T Consensus 108 p~~~-----~l~~-i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~ 149 (355)
T 3amr_A 108 GKNG-----TLQS-MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT 149 (355)
T ss_dssp TTTC-----CEEE-CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE
T ss_pred CCCC-----ceee-ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE
Confidence 6553 4565 6 643 67888888 55444 566654
No 111
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=51.07 E-value=2.9e+02 Score=30.58 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=49.0
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCc
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGV 735 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~ 735 (1192)
...|.++++. +.+++.+..||+|++|.+....+..... ....+.++++...
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~-------------------- 217 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------IEDGVTTVAVSPG-------------------- 217 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEEEEECST--------------------
T ss_pred CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-------cCCCcEEEEEECC--------------------
Confidence 3458888874 5688889999999999876543322211 1334555543210
Q ss_pred cccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 736 GEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
...+++.+..+|.++||.+.+..++
T Consensus 218 --------------~~~~l~~~s~d~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 218 --------------DGKYIAAGSLDRAVRVWDSETGFLV 242 (393)
T ss_dssp --------------TCCEEEEEETTSCEEEEETTTCCEE
T ss_pred --------------CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 1126777888999999998775543
No 112
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=49.96 E-value=2.8e+02 Score=29.99 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=46.0
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +.+++.+..||+|++|.+........+. .....|.++++..|
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~------~h~~~v~~v~~sp~--------------------- 129 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV------GHQSEVYSVAFSPD--------------------- 129 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE------CCCSCEEEEEECSS---------------------
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------CCCCcEEEEEECCC---------------------
Confidence 347777764 4688888899999999886554322221 23456777655211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP 769 (1192)
.. +++.+-.+|.+.||++.
T Consensus 130 -------------~~-~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 130 -------------NR-QILSAGAEREIKLWNIL 148 (343)
T ss_dssp -------------TT-EEEEEETTSCEEEEESS
T ss_pred -------------CC-EEEEEcCCCEEEEEecc
Confidence 12 56677789999999985
No 113
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=49.02 E-value=2.4e+02 Score=29.90 Aligned_cols=146 Identities=9% Similarity=0.067 Sum_probs=0.0
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecCCC--ccCeEEEecCCCEEEEEEeecCccccccccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKA--TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQID 1046 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~--tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~ 1046 (1192)
++....++.+++-.+.... .+++ ++++. .|+.++++|+.+.+++....
T Consensus 14 ~v~~~~~~~v~~~d~~~~~------~~~~-~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------------- 63 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVASDT------VYKS-CVMPDKFGPGTAMMAPDNRTAYVLNNH----------------------- 63 (349)
T ss_dssp EEEEETTTEEEEEETTTTE------EEEE-EECSSCCSSCEEEECTTSSEEEEEETT-----------------------
T ss_pred EEEeCCCCeEEEEECCCCc------EEEE-EecCCCCCCceeEECCCCCEEEEEeCC-----------------------
Q ss_pred cCCCCccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCC-----CcceEEEEEEEeccccCCCCceEEEEEeccccC
Q 001003 1047 NHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQS-----SENALTVRVVTLFNTTTKENETLLAIGTAYVQG 1121 (1192)
Q Consensus 1047 ~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~-----~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g 1121 (1192)
...|.++++. +.+.+..+++.. ...+.++.. ....+.+++.+......
T Consensus 64 ----------------~~~i~~~d~~----t~~~~~~~~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 64 ----------------YGDIYGIDLD----TCKNTFHANLSSVPGEVGRSMYSFAI-------SPDGKEVYATVNPTQRL 116 (349)
T ss_dssp ----------------TTEEEEEETT----TTEEEEEEESCCSTTEEEECSSCEEE-------CTTSSEEEEEEEEEEEC
T ss_pred ----------------CCcEEEEeCC----CCcEEEEEEcccccccccccccceEE-------CCCCCEEEEEccccccc
Q ss_pred ccccc--CceEEEEEeee---CCCCCceeEeecccCcccccchhcccCceEEEeecceEEee
Q 001003 1122 EDVAA--RGRVLLFSTGR---NADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVF 1178 (1192)
Q Consensus 1122 Ed~~~--rGRIlvfev~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1178 (1192)
.+.-. .|+|++|++.. ........+.......+++ -.|. +.+++.. |++|
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-----~dg~-l~~~~~~-i~~~ 171 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA-----DDGS-LYVAGPD-IYKM 171 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC-----TTSC-EEEESSS-EEEE
T ss_pred ccccccCCCeEEEEECCCccccceeeeccCCCcccceeEC-----CCCc-EEEccCc-EEEE
No 114
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=48.47 E-value=86 Score=35.66 Aligned_cols=81 Identities=10% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCcEEEEEEc--CC-EEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 658 NSTVLSVSIA--DP-YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 658 ~~~Iv~asi~--dp-yvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
...|.++++. ++ +++.+..||+|.+|.+........... .......|.++++-.
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~sp-------------------- 306 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY---SLPHRHPVNAACFSP-------------------- 306 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB---CCBCSSCEEECCBCT--------------------
T ss_pred cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE---eeeccccccceeECC--------------------
Confidence 3458888884 34 566678899999998754322111100 111234555543310
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEE
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFT 776 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~ 776 (1192)
... +++.+-.+|.+.||++.+.++...
T Consensus 307 --------------dg~-~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 307 --------------DGA-RLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp --------------TSS-EEEEEESSSCEEEEESSSSSSEEE
T ss_pred --------------CCC-eeEEEcCCCEEEEEECCCCccceE
Confidence 112 677788899999999988665433
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=48.42 E-value=3.3e+02 Score=30.39 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=36.3
Q ss_pred cCcEEEEeCCc--ceeeeecCCCCCCCCCCCCCCcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCc
Q 001003 628 ERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTC 690 (1192)
Q Consensus 628 ~~~vrli~~~~--~~q~i~~~~~~~e~~~~~~~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~ 690 (1192)
.+.|++.+... ..+.+.+. ..+..|.+++.. +.+++++..||+|.+|.......
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~---------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQME---------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECC---------STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEECCCCCEEEEEEec---------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 34578887553 23323331 124459999885 57999999999999998866533
No 116
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=48.40 E-value=2.7e+02 Score=29.39 Aligned_cols=52 Identities=8% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCc-EEEEEe--cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEE
Q 001003 966 NHG-FIYVTS--QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 966 ~~G-fi~~~~--~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~ 1020 (1192)
|+| .+|++. ++.+++..+..... ..-.+.. ++.+..|+.++++|+.+.+++.
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~--~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGS--VLSKEGF-QPTETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSC--CEEEEEE-EECSSSCCCEEECTTSSEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCC--ceEEeee-ecCCCccceEEECCCCCEEEEe
Confidence 444 677655 46888888874221 1235666 8887779999999988866654
No 117
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=46.85 E-value=3.1e+02 Score=29.65 Aligned_cols=55 Identities=9% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCc-EEEEEe--cCeEEEEEcCCCCc------cCC--ccceEEEecCCCccCeEEEecCCCEEEEEE
Q 001003 966 NHG-FIYVTS--QGILKICQLPSGST------YDN--YWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021 (1192)
Q Consensus 966 ~~G-fi~~~~--~~~LrI~~l~~~~~------~d~--~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~ 1021 (1192)
|+| ++|+.. .+.+++..++.... +.. .-.... ++.+..|+.++++|+.+.++++.
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~ 229 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKFAYLIN 229 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCEEEEEc
Confidence 565 577765 35788888886542 200 003445 66778899999999998666543
No 118
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=46.67 E-value=3.1e+02 Score=29.66 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=45.2
Q ss_pred cEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 660 ~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
.|.+++.+ +.+++.+..||+|++|..+.......... .......|.++++..|
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~---~~~h~~~v~~~~~sp~---------------------- 72 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL---SEGHQRTVRKVAWSPC---------------------- 72 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE---CSSCSSCEEEEEECTT----------------------
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee---ccccCCcEEEEEECCC----------------------
Confidence 46666663 56788888999999998875432111111 1112446776654211
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
.. +++.+-.+|.+.||.+..
T Consensus 73 ------------g~-~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 73 ------------GN-YLASASFDATTCIWKKNQ 92 (345)
T ss_dssp ------------SS-EEEEEETTSCEEEEEECC
T ss_pred ------------CC-EEEEEECCCcEEEEEccC
Confidence 12 677778899999998754
No 119
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=43.96 E-value=3.4e+02 Score=29.33 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=47.5
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.+++.. +.+++.+..|++|.+|.++.......+. .+......|.++++..+
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~~p~--------------------- 161 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS---VLNSHTQDVKHVVWHPS--------------------- 161 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE---EECCCCSCEEEEEECSS---------------------
T ss_pred CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE---EecCcCCCeEEEEECCC---------------------
Confidence 458888874 5688889999999999987543211111 11122445665544211
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCce
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFN 772 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~ 772 (1192)
.. +++.+..+|.+.||.+.+.+
T Consensus 162 -------------~~-~l~s~s~d~~i~~w~~~~~~ 183 (345)
T 3fm0_A 162 -------------QE-LLASASYDDTVKLYREEEDD 183 (345)
T ss_dssp -------------SS-CEEEEETTSCEEEEEEETTE
T ss_pred -------------CC-EEEEEeCCCcEEEEEecCCC
Confidence 11 56777889999999876543
No 120
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=43.89 E-value=3.1e+02 Score=28.79 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=18.2
Q ss_pred EEEEEEecCCeEEEEECCCceeeEEe
Q 001003 752 IYSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 752 ~~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
.+++....++.+.+|++.+.+.+...
T Consensus 47 ~l~v~~~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 47 IAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCCeEeeE
Confidence 34455667889999999887665433
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=42.16 E-value=3.7e+02 Score=29.25 Aligned_cols=112 Identities=10% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEE--EeCCcEEEEEecCCCceEe----
Q 001003 620 RRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLG--MSDGSIRLLVGDPSTCTVS---- 693 (1192)
Q Consensus 620 ~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~--~~dg~i~~l~~d~~~~~l~---- 693 (1192)
...++=+..+.|++++.....+.+... . . ....+++...++++. ..||+|.+|.+........
T Consensus 110 ~~~~~~~~~~~i~i~d~~~~~~~~~~~------~----~-~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 110 REFIVVSYGDVISVFKFGNPWKRITDD------I----R-FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp SSEEEEEETTEEEEEESSTTCCBSSCC------E----E-EEEEEEEETTEEEEEESSCTTCEEEEECCC----------
T ss_pred CCEEEEEEcCEEEEEECCCCceeeEEe------c----c-CCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 344444567778888755321111111 1 1 123344444777774 6899999998764321000
Q ss_pred -----ecc-ccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCe-EEEE
Q 001003 694 -----VQT-PAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGA-LEIF 766 (1192)
Q Consensus 694 -----~~~-~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~-l~I~ 766 (1192)
+.. ...+......|.++++-.| . .+++.+-.+|+ ++||
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~----------------------------------g-~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRK----------------------------------S-DMVATCSQDGTIIRVF 223 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTT----------------------------------S-SEEEEEETTCSEEEEE
T ss_pred ccccccCcccEEEEccCCceEEEEECCC----------------------------------C-CEEEEEeCCCCEEEEE
Confidence 000 1112223456666654211 1 26777888998 9999
Q ss_pred ECCCceeeEEe
Q 001003 767 DVPNFNCVFTV 777 (1192)
Q Consensus 767 sLP~~~~v~~~ 777 (1192)
++.+.+++...
T Consensus 224 d~~~~~~~~~~ 234 (355)
T 3vu4_A 224 KTEDGVLVREF 234 (355)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99887665443
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=41.76 E-value=2.6e+02 Score=30.57 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCc-EEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccC
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGS-IRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~-i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1192)
...|.++++. +.+++.+..||+ |++|.+....+...+.. +.....|.++++-.|
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~----g~h~~~v~~~~~s~~------------------- 251 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR----GLDRADVVDMKWSTD------------------- 251 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC----TTCCSCEEEEEECTT-------------------
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----CCCCCcEEEEEECCC-------------------
Confidence 3458888884 568888999999 99998876544322210 002445766654211
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
. .+++.+-.+|.++||.+.+
T Consensus 252 ---------------~-~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 252 ---------------G-SKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ---------------S-CEEEEEETTCEEEEEESSC
T ss_pred ---------------C-CEEEEEECCCEEEEEEccC
Confidence 1 2677788899999999975
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=34.91 E-value=4.4e+02 Score=31.80 Aligned_cols=139 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEEecCeEEEEEcCCCCccCCccceEEEecCCCc------cCeEEEecCCCEEEEEEeecCccccccccccccccccc
Q 001003 969 FIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKAT------PHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVG 1042 (1192)
Q Consensus 969 fi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~t------p~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~ 1042 (1192)
++..+.+|+++|-.... .... +. ... .+.++|+|+.+.+++++
T Consensus 100 LAs~s~dg~V~iwd~~~--------~l~~-l~-~~~~~~~~sv~svafSPDG~~LAsgs--------------------- 148 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK--------MLTN-LD-SKGNLSSRTYHCFEWNPIESSIVVGN--------------------- 148 (588)
T ss_dssp EEEEETTSCEEEEETTE--------EEEE-CC-CSSCSTTTCEEEEEECSSSSCEEEEE---------------------
T ss_pred EEEEeCCCcEEEEeCCc--------eeee-cc-CCCccccccEEEEEEcCCCCEEEEEc---------------------
Q ss_pred cccccCCCCccccccCcceeeeEEEEEcCCCCCC---CceeeeeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccc
Q 001003 1043 HQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGG---PWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYV 1119 (1192)
Q Consensus 1043 ~~~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~---twe~id~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~ 1119 (1192)
+.+.|++.+...+.. +|-.+..++.....|.-.|..|.+. .++ +|+|
T Consensus 149 -------------------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS---Pdg----Laas---- 198 (588)
T 2j04_A 149 -------------------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY---EDV----LVAA---- 198 (588)
T ss_dssp -------------------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE---TTE----EEEE----
T ss_pred -------------------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc---CCc----EEEE----
Q ss_pred cCcccccCceEEEEEeeeCCCCC--cee-EeecccCcccccchhcccCceEEEeecceEEee
Q 001003 1120 QGEDVAARGRVLLFSTGRNADNP--QNL-VLSGSYGPLFSSVQIDFASHFFAICSNSFVFVF 1178 (1192)
Q Consensus 1120 ~gEd~~~rGRIlvfev~~~~~~~--e~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 1178 (1192)
..-+.+++|++....-.. .++ ..|. ..+.+ ..|.|..+|+++...|++|
T Consensus 199 -----s~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~s---vaFsg~~LASa~~~tIkLW 250 (588)
T 2j04_A 199 -----LSNNSVFSMTVSASSHQPVSRMIQNASR--RKITD---LKIVDYKVVLTCPGYVHKI 250 (588)
T ss_dssp -----ETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCC---EEEETTEEEEECSSEEEEE
T ss_pred -----eCCCeEEEEECCCCccccceeeeccccc--CcEEE---EEEECCEEEEEeCCeEEEE
No 124
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=32.71 E-value=4.8e+02 Score=27.83 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.9
Q ss_pred CCcEEEEEEc--CCEEEEEEeCCcEEEEEecC
Q 001003 658 NSTVLSVSIA--DPYVLLGMSDGSIRLLVGDP 687 (1192)
Q Consensus 658 ~~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~ 687 (1192)
...|.++++. +.+++.+..|++|++|.++.
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 3458888874 56888888999999998843
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=31.35 E-value=4.6e+02 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCcEEEEEEc----CCEEEEEEeCCcEEEEEecCC
Q 001003 658 NSTVLSVSIA----DPYVLLGMSDGSIRLLVGDPS 688 (1192)
Q Consensus 658 ~~~Iv~asi~----dpyvlv~~~dg~i~~l~~d~~ 688 (1192)
...|.+++.. +.+++.+..||+|.+|.++..
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 3458998885 568888999999999998654
No 126
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=29.38 E-value=4.7e+02 Score=27.71 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred CcEEEEEEc--CCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcc
Q 001003 659 STVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVG 736 (1192)
Q Consensus 659 ~~Iv~asi~--dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~ 736 (1192)
..|.++++. +.+++.+..|++|++|.+......+. . .+......|.++++..+.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-~---~l~gH~~~V~~v~~~~~~-------------------- 69 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-A---DLRGHEGPVWQVAWAHPM-------------------- 69 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-E---EEECCSSCEEEEEECCGG--------------------
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-E---EEcCCCccEEEEEeCCCC--------------------
Confidence 458888774 57888899999999998865432111 1 122234567776552110
Q ss_pred ccccCCCCCCCCCCcEEEEEEecCCeEEEEECCC
Q 001003 737 EAIDGADGGPLDQGDIYSVVCYESGALEIFDVPN 770 (1192)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~ 770 (1192)
.. .+++.+-.+|.+.||.+.+
T Consensus 70 ------------~~-~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 70 ------------YG-NILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ------------GS-SCEEEEETTSCEEEECCSS
T ss_pred ------------CC-CEEEEEECCCEEEEEECCC
Confidence 01 1566777899999999875
No 127
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=29.36 E-value=5.9e+02 Score=27.76 Aligned_cols=25 Identities=4% Similarity=0.196 Sum_probs=20.5
Q ss_pred EEEEEecCCeEEEEECCCceeeEEe
Q 001003 753 YSVVCYESGALEIFDVPNFNCVFTV 777 (1192)
Q Consensus 753 ~l~v~~~~g~l~I~sLP~~~~v~~~ 777 (1192)
+++.+..+|++.||.+.+.+++...
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEcCCCEEEEEECCCCcEEEEe
Confidence 7788888999999999987765443
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=27.58 E-value=4.6e+02 Score=28.92 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=46.0
Q ss_pred cCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCC
Q 001003 667 ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGP 746 (1192)
Q Consensus 667 ~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1192)
...+++-+..|++|+++..+..... .......+......|.++++...... .
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH~~~v~~v~~~p~~~~-----------------~---------- 151 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETII-TQHVLGGKSGHHNFVNDIDIADVYSA-----------------D---------- 151 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEE-EEEEECTTTSCSSCEEEEEEEEEECT-----------------T----------
T ss_pred CCCEEEEEeCCCcEEEEECCCCccc-eeeeecccCCCCCceEEEEEcccccc-----------------c----------
Confidence 3446777888999999988765331 11111123334556777755311000 0
Q ss_pred CCCCcEEEEEEecCCeEEEEECCCceee
Q 001003 747 LDQGDIYSVVCYESGALEIFDVPNFNCV 774 (1192)
Q Consensus 747 ~~~~~~~l~v~~~~g~l~I~sLP~~~~v 774 (1192)
......+++-+-.+++++||.+.+-..+
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 0011347777888999999998664443
No 129
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=27.39 E-value=5.9e+02 Score=27.12 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceE-eeccccccccCCCceeEEEeeccCCCCCcccccccccccccCccc
Q 001003 659 STVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTV-SVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1192)
Q Consensus 659 ~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l-~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1192)
..|.+++....+++.+..||+|++|.+......+ .... .......|.++++..+
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~---~~~h~~~v~~v~~sp~---------------------- 69 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD---ETAHKKAIRSVAWRPH---------------------- 69 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC---TTCCCSCEEEEEECTT----------------------
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe---cCCccCCEEEEEECCC----------------------
Confidence 3588888877788889999999999886542221 1110 0112445776654211
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 001003 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1192)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP 769 (1192)
.. +++.+-.+|.++||++.
T Consensus 70 ------------~~-~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 70 ------------TS-LLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp ------------SS-EEEEEETTSCEEEEEC-
T ss_pred ------------CC-EEEEEeCCCcEEEEEcc
Confidence 12 67777789999999974
No 130
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=22.96 E-value=7.1e+02 Score=26.52 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=36.7
Q ss_pred ceEEEecCCCc--cCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCCccccccCcceeeeEEEEEcC
Q 001003 994 PVQKVIPLKAT--PHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEP 1071 (1192)
Q Consensus 994 ~vrk~ipL~~t--p~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~p~~~~~sv~Lldp 1071 (1192)
.+++ +|++.. |+-++|+++..+| +.+.. ...++|+.+|+
T Consensus 11 vv~~-~p~~~~~f~~Gl~~~~dg~Ly-vstg~-------------------------------------~~~s~v~~iD~ 51 (266)
T 2iwa_A 11 VLNE-FPHDPYAFTQGLVYAENDTLF-ESTGL-------------------------------------YGRSSVRQVAL 51 (266)
T ss_dssp EEEE-EECCTTCCEEEEEECSTTEEE-EEECS-------------------------------------TTTCEEEEEET
T ss_pred EEEE-EECCCCCCcccEEEeCCCeEE-EECCC-------------------------------------CCCCEEEEEEC
Confidence 5677 999864 7999999874333 32211 01346778887
Q ss_pred CCCCCCceeeeeEECCCCcceE
Q 001003 1072 DRAGGPWQTRATIPMQSSENAL 1093 (1192)
Q Consensus 1072 ~~~~~twe~id~~el~~~E~v~ 1093 (1192)
. |-+++.++.+++.....
T Consensus 52 ~----tg~v~~~i~l~~~~fge 69 (266)
T 2iwa_A 52 Q----TGKVENIHKMDDSYFGE 69 (266)
T ss_dssp T----TCCEEEEEECCTTCCEE
T ss_pred C----CCCEEEEEecCCCcceE
Confidence 4 66777777777655544
No 131
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=21.85 E-value=5.9e+02 Score=26.95 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=55.5
Q ss_pred eEEEEcCCCCeEEEE-e-CCc-eEEEecCCCCceeEEecccCCCCCCcEEEEEec--CeEEEEEcCCCCccCCccceEEE
Q 001003 924 QGFFLSGSRPCWCMV-F-RER-LRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQ--GILKICQLPSGSTYDNYWPVQKV 998 (1192)
Q Consensus 924 ~gVF~~G~rP~wi~~-~-~g~-l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~--~~LrI~~l~~~~~~d~~~~vrk~ 998 (1192)
..+|+..++|-.|+. . .|+ ++-.|+........++. .++|.+++..+ +.+.+..++.... -|.+++
T Consensus 39 ~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~-----~~~g~~~vs~E~~~~l~~~~v~~~~~---i~~~~~- 109 (255)
T 3qqz_A 39 NTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEY-----IGDNQFVISDERDYAIYVISLTPNSE---VKILKK- 109 (255)
T ss_dssp TEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEE-----CSTTEEEEEETTTTEEEEEEECTTCC---EEEEEE-
T ss_pred CEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEE-----eCCCEEEEEECCCCcEEEEEcCCCCe---eeeeee-
Confidence 357777777766765 2 333 44445444445666665 35566666654 4677777776652 255666
Q ss_pred e--cCCCcc-----CeEEEecCCCEEEEEEe
Q 001003 999 I--PLKATP-----HQITYFAEKNLYPLIVS 1022 (1192)
Q Consensus 999 i--pL~~tp-----~~Iay~~~~~~y~v~~s 1022 (1192)
+ |++..+ --|||+|..+.+.++.-
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred eccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 6 445555 78999999977766553
No 132
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=21.50 E-value=8.7e+02 Score=27.01 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=14.8
Q ss_pred cEEEEEEecCCeEEEEECC
Q 001003 751 DIYSVVCYESGALEIFDVP 769 (1192)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLP 769 (1192)
.++++.+..+|.+.||.+.
T Consensus 115 ~~l~~~~~~dg~v~iwd~~ 133 (450)
T 2vdu_B 115 SRLIACADSDKSLLVFDVD 133 (450)
T ss_dssp SEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEECc
Confidence 3445677788999999987
No 133
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=21.46 E-value=8.8e+02 Score=27.09 Aligned_cols=61 Identities=25% Similarity=0.416 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCCceEeecccc--ccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEE
Q 001003 677 DGSIRLLVGDPSTCTVSVQTPA--AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYS 754 (1192)
Q Consensus 677 dg~i~~l~~d~~~~~l~~~~~~--~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 754 (1192)
+++|.+|.+|+.+..+...... .+.....+.-.+|+|.+.. ...+++
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~-------------------------------~g~~ya 146 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQK-------------------------------TGKYYA 146 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTT-------------------------------TCCEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCC-------------------------------CCcEEE
Confidence 4789999998765545422110 0111113455578886431 124689
Q ss_pred EEEecCCeEEEEEC
Q 001003 755 VVCYESGALEIFDV 768 (1192)
Q Consensus 755 ~v~~~~g~l~I~sL 768 (1192)
++...+|.++.|.|
T Consensus 147 fV~~k~G~~~q~~l 160 (355)
T 3amr_A 147 MVTGKEGEFEQYEL 160 (355)
T ss_dssp EEECSSSEEEEEEE
T ss_pred EEECCCCeEEEEEE
Confidence 99999999998887
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=20.89 E-value=7.6e+02 Score=26.09 Aligned_cols=53 Identities=8% Similarity=0.086 Sum_probs=32.1
Q ss_pred CCcEEEEEe--cCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEE
Q 001003 966 NHGFIYVTS--QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1192)
Q Consensus 966 ~~Gfi~~~~--~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~ 1020 (1192)
|+|-+|+.. ++.+++..+....++. ...... ++.+..|+.++++|+.+.++++
T Consensus 150 pdg~l~v~~~~~~~v~~~~~~~~g~~~-~~~~~~-~~~g~~p~~~~~spdg~~l~v~ 204 (347)
T 3hfq_A 150 PDNRLAVIDLGSDKVYVYNVSDAGQLS-EQSVLT-MEAGFGPRHLVFSPDGQYAFLA 204 (347)
T ss_dssp TTSCEEEEETTTTEEEEEEECTTSCEE-EEEEEE-CCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEeCCCCEEEEEEECCCCcEE-EeeeEE-cCCCCCCceEEECCCCCEEEEE
Confidence 455466654 3578888887433220 111123 4556689999999999855554
No 135
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=20.34 E-value=5.7e+02 Score=28.93 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCEEEEEecCcEEEEeCCcceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeecccc
Q 001003 619 GRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPA 698 (1192)
Q Consensus 619 ~~~~IvQVt~~~vrli~~~~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~ 698 (1192)
+++.++=....+|++++.....+.-... .-...+.......|.++++.+||+|.++.+......-.
T Consensus 96 d~~~L~v~~~~~l~v~dv~sl~~~~~~~---------~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~~----- 161 (388)
T 1xip_A 96 HGDQVLVSTRNALYSLDLEELSEFRTVT---------SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL----- 161 (388)
T ss_dssp ETTEEEEEESSEEEEEESSSTTCEEEEE---------ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE-----
T ss_pred CCCEEEEEcCCcEEEEEchhhhccCccc---------eeecceeeEEecCCCEEEEECCCCEEEEEccCCccccc-----
Q ss_pred ccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCcee
Q 001003 699 AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1192)
Q Consensus 699 ~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~ 773 (1192)
...++|+|. +..+ ++++..+|.+++|..+..++
T Consensus 162 -----~~~Vs~v~W----------------------------------SpkG---~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 162 -----AQNVTSFDV----------------------------------TNSQ---LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp -----EESEEEEEE----------------------------------CSSE---EEEEETTSCEEEEEEETTEE
T ss_pred -----cCCceEEEE----------------------------------cCCc---eEEEEcCCcEEEEcCCCccc
Done!