Query 001004
Match_columns 1192
No_of_seqs 205 out of 295
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 13:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0916 1,3-beta-glucan syntha 100.0 0E+00 0E+00 3311.9 77.4 1098 6-1183 575-1678(1679)
2 PF02364 Glucan_synthase: 1,3- 100.0 5E-275 1E-279 2392.8 48.7 698 287-1026 1-777 (817)
3 PF02364 Glucan_synthase: 1,3- 98.1 7.1E-07 1.5E-11 109.8 1.9 42 384-425 101-142 (817)
4 PRK11498 bcsA cellulose syntha 86.9 0.33 7.1E-06 62.3 2.0 188 556-763 325-522 (852)
5 PRK14583 hmsR N-glycosyltransf 84.5 6 0.00013 46.9 10.6 134 556-703 141-276 (444)
6 PRK11204 N-glycosyltransferase 82.9 2.8 6E-05 48.6 7.0 142 544-705 112-257 (420)
7 TIGR03111 glyc2_xrt_Gpos1 puta 52.1 56 0.0012 39.0 8.8 42 556-601 117-159 (439)
8 PF12823 DUF3817: Domain of un 50.3 55 0.0012 31.9 6.8 68 1031-1103 13-81 (92)
9 cd06421 CESA_CelA_like CESA_Ce 47.2 16 0.00034 37.9 2.9 138 556-705 70-208 (234)
10 TIGR03030 CelA cellulose synth 45.3 3.2E+02 0.0069 35.2 14.3 135 557-705 215-355 (713)
11 CHL00032 ndhA NADH dehydrogena 44.6 2.7E+02 0.0059 33.3 12.6 28 1121-1148 157-186 (363)
12 PF11457 DUF3021: Protein of u 38.8 3.5E+02 0.0075 27.1 10.8 86 1061-1154 7-99 (136)
13 PHA03048 IMV membrane protein; 35.3 56 0.0012 32.2 4.3 30 743-772 1-30 (93)
14 PRK05454 glucosyltransferase M 29.8 8.2E+02 0.018 31.9 14.4 140 556-704 204-352 (691)
15 PF15469 Sec5: Exocyst complex 27.8 1.7E+02 0.0037 30.9 6.8 65 101-170 72-139 (182)
16 KOG3659 Sodium-neurotransmitte 24.7 1.6E+02 0.0036 37.4 6.8 65 1009-1079 481-555 (629)
17 PF05794 Tcp11: T-complex prot 24.5 4.1E+02 0.0089 31.8 10.0 95 122-226 43-156 (441)
18 PF14518 Haem_oxygenas_2: Iron 24.5 45 0.00098 31.8 1.7 75 554-649 9-89 (106)
19 PF10569 Thiol-ester_cl: Alpha 24.4 28 0.0006 28.0 0.2 11 724-734 9-19 (31)
20 PF12794 MscS_TM: Mechanosensi 24.3 5.6E+02 0.012 30.2 10.8 25 1131-1155 195-221 (340)
21 PLN02436 cellulose synthase A 23.9 6.2E+02 0.014 34.6 11.9 224 680-937 792-1040(1094)
22 TIGR01667 YCCS_YHJK integral m 23.3 8E+02 0.017 32.0 12.7 41 1128-1169 502-542 (701)
23 PRK11281 hypothetical protein; 22.7 2.5E+02 0.0053 38.4 8.3 13 995-1007 543-555 (1113)
24 cd02520 Glucosylceramide_synth 22.3 53 0.0012 33.9 1.9 102 556-705 72-174 (196)
25 PRK10547 chemotaxis protein Ch 21.4 4.2E+02 0.0091 34.3 9.6 87 128-218 10-96 (670)
26 PRK14716 bacteriophage N4 adso 21.1 89 0.0019 38.7 3.7 26 679-704 260-285 (504)
27 cd04195 GT2_AmsE_like GT2_AmsE 20.3 1.1E+02 0.0023 31.2 3.5 131 546-700 60-193 (201)
28 PF08019 DUF1705: Domain of un 20.2 1.1E+02 0.0024 31.8 3.6 37 1006-1042 33-78 (156)
No 1
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=0 Score=3311.88 Aligned_cols=1098 Identities=60% Similarity=0.962 Sum_probs=1037.9
Q ss_pred ccccHHHHhhcCCCCccchhhhhccccccccccccccccchhHHHHHHHHhHHHHHhccccccccccccccccccccCCC
Q 001004 6 FQSLPGAFNACLIPVEKNEKTKKKGLKATFSRKFDEVTTNKEKEEAKFAQMWNKIISSFREEDLISNREMDLLLVPYWAD 85 (1192)
Q Consensus 6 f~~~p~af~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rFa~~WNeii~sfReeDlisdrE~~lL~~p~~~~ 85 (1192)
|++||+||+.+|+|.+ .+++...+..|.. +.++.+++++++|+++||+||.++||||+|||||++++++|++..
T Consensus 575 f~~lp~af~~~l~~~~---~~r~~~~~~~ft~---~~~~~~~~~a~~f~~lWn~vi~a~r~Edyis~~e~~l~i~~l~~~ 648 (1679)
T KOG0916|consen 575 FQPLPGAFNAYLKPKE---SKRKYLANKTFTA---KFAPLNGKEAARFALLWNTVILAKREEDYISLRELRLLIRPLSTM 648 (1679)
T ss_pred eeEchHhHhhhcCCCc---hhhhhhhhhcccc---cCCCcchHHHHHHHHHHHHHHHHhhhHHhhhccchhhhhcccccC
Confidence 7899999999999964 2222223333443 566778999999999999999999999999999999999997766
Q ss_pred CCCCcccCchhhhcCchHHHHHHHHhhcCCcH-HHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCc-hhhHHHHHHHHH
Q 001004 86 RDLDLIQWPPFLLASKIPIALDMAKDSNGRDR-ELKKRLNSDNYMHRAVQECYASFKIIINVLVLGE-REKEVINEIFSK 163 (1192)
Q Consensus 86 ~~~~~i~wP~FLla~ki~~Al~~a~~~~~~d~-~L~~~i~~d~y~~~Av~e~y~s~k~il~~ll~~~-~~~~ii~~i~~~ 163 (1192)
...+.. +|||+| ++|++|||+..+++. +|+++|++|+||.|||.|||+|+|+++..++.++ .++.|+++++++
T Consensus 649 ~~~~~~---~flL~s--~la~~qaK~~~g~~~~~l~~~~~~DtYm~yaV~e~y~Sik~~~~~~i~~~T~~r~i~~ri~~r 723 (1679)
T KOG0916|consen 649 SSYDCT---IFLLGS--PLALDQAKILLGKMYLTLLILFFLDTYLWYAVVETYFSIKKSFYLGISILTPWRNIFSRLPKR 723 (1679)
T ss_pred Ccccch---hHHhcc--HHHHHHHHHhcCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHH
Confidence 333333 999999 999999999998665 9999999999999999999999999999999998 888999999999
Q ss_pred HHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHHHHHHhhhccCcccccccCCCCCCCCCC
Q 001004 164 VDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRVVIVLLNMLEVVTRDIMEDDVPSLLDSSHGGSYGKTE 243 (1192)
Q Consensus 164 i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~vv~~l~~l~e~v~~d~~~~~~~~~~~~~~~~~~~~~~ 243 (1192)
|+.+|.+.++..+|||+.||.++.+++.|+ ...++ ++++|+++|++++|++.++.+
T Consensus 724 I~~~I~~~~~~~~fk~~vL~~~~~~~i~i~-----my~e~----l~~lq~l~ell~~qv~~e~~~--------------- 779 (1679)
T KOG0916|consen 724 IYSKILATDLEIEFKPKVLPSQIWNAIKIS-----MYREH----LLALQHLQELLYHQVPSEGGG--------------- 779 (1679)
T ss_pred HHHHHHHhhHHHHhChhhhHHHHhhhhhee-----hhHHH----HHHHHHHHHHHHHHhhhhccc---------------
Confidence 999999999999999999999999999998 11222 999999999999999988722
Q ss_pred CCCccccccccccccCCCCCCCChHHHHHHHHHHhhhcccccccCCCCChhhhHhHhhhhccCCCCCCCCccccccccce
Q 001004 244 GMTPLDQQVHFFGALGFPVYPETEAWKEKIRRLHLLLTVKESAMDVPSNLEAIRRISFFSNSLFMDMPSAPKVRNMLSFS 323 (1192)
Q Consensus 244 ~~~~~~~~~lF~~~i~~p~~~~~~~~~~~~~Rl~~lLt~~~sa~~~P~n~EArRRisFFanSL~m~mP~a~~V~~M~sfS 323 (1192)
..++..++|.+ + ++..| |+|+++|+|+||||||+||||||||+||+||||++|||||
T Consensus 780 --~~~~~~~ff~~-~------~d~~~--------------~s~~~~P~n~EA~RRisFFa~SL~m~mP~a~~V~~M~sFs 836 (1679)
T KOG0916|consen 780 --QTLKAPTFFVS-Q------DDGSF--------------ESAEFVPSNLEARRRISFFANSLFMPMPEAPPVRNMPSFS 836 (1679)
T ss_pred --chhhcchhhee-c------ccccc--------------cchhhCCccHHHHHHHHHHHHhhccCCCCCCcccccCcee
Confidence 01111225554 2 23333 8899999999999999999999999999999999999999
Q ss_pred eecccccceeecccccccCCCCCcccHHHHHHhhCchhhhhHHHHhcCCchh---hhhhchHHHHHHhhhhhcccccccc
Q 001004 324 VLTPYYSEDVLFSINGLEKPNEDGVSILFYLQKIFPDEWMNFLERVNCSSEE---ELRASEELEEELRLWASYRGQTLTK 400 (1192)
Q Consensus 324 VLtPyY~E~Vl~Sl~eL~~e~edgvsiL~YL~~i~PdEW~NFler~~~~~~~---~~~~~~~~~~elRlWAS~RgQTL~R 400 (1192)
||||||+||||||++||++|||||||||+||||||||||+||+||+||++++ |+...+++.++||+|||||||||||
T Consensus 837 VLtP~YsE~vl~S~~el~~e~ed~vsiL~YLqki~pdEW~nFler~k~~~~e~~~dl~~~pe~~l~lR~WaS~RgQTL~R 916 (1679)
T KOG0916|consen 837 VLTPYYSEKVLYSLRELIRENEDGVSILFYLQKIYPDEWKNFLERTKCLAEEKIDDLPFYPEYTLRLRIWASYRGQTLYR 916 (1679)
T ss_pred eecccchhhhhhhHHHHhhcccCCeeHHHHHHHhCcHHHHHHHHHhccchhccccccccchhHHHHHHHHHHhccccHHH
Confidence 9999999999999999999999999999999999999999999999999977 6555578999999999999999999
Q ss_pred cccccccHHHHHHHhhhhcccChHHHHhhhhhhcccchhhccchhhHHHHHHHHHhCcccEEEEeeeccCCCCCCccchH
Q 001004 401 TVRGMMYYRKALELQAFLDMAKDEELMKGYKAAELNSEEQSKSETSLWAQCQAVSDMKFTYVVSCQQYGTHKRSGDARAK 480 (1192)
Q Consensus 401 TVrGmM~Y~~ALkll~~lE~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~KF~yVVscQ~Yg~~k~~~~~~a~ 480 (1192)
||||||||+|||||||++|+|++.++.+|.++ ....+++++++||++|||||||||+||.||+++|++|+
T Consensus 917 TvrGmMyY~rAlkL~~~~e~~~~~~~~~G~~~----------~~~~l~~~l~~~A~~KFtyvVscQ~Y~~~K~~~d~~ae 986 (1679)
T KOG0916|consen 917 TVRGMMYYSRALKLLYFLENPEEVDLFEGDSN----------EDRSLEAELEAMADRKFTYVVSCQRYGNQKFSGDERAE 986 (1679)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHhcCCch----------hhhHHHHHHHHHHhccceEEEehhHhhhhccCCChHHH
Confidence 99999999999999999999999999988331 11258999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeeecccccccccccccceEEEEEEeccCCCCCCCCCccccccccceEEEeecCCCcccCCCCCc
Q 001004 481 DILRLMTTYPSLRVAYIDEVEETSKDKTKKTVQKVYYSALAKAAAPTKSIDSSETVQTLDQVIYRIKLPGPAILGGGKPE 560 (1192)
Q Consensus 481 di~~Lm~~~P~LrVAYiDe~~~~~~~~~~~~~~~~yySvLik~~~~~~~~d~~~~~~~~~~eiYRIkLPG~piLGEGKpe 560 (1192)
||++||++||+||||||||++++.+++ +++||||||||+++. +++++|+|||||||||||||||||||
T Consensus 987 ~i~~Lm~~yp~LriAYide~e~~~~~~-----~~~~YS~Lvk~~~~~-------~~~~~~~~iyrIkLpG~pilGeGKpe 1054 (1679)
T KOG0916|consen 987 NILFLMRAYPSLRIAYIDEVEPPVEEG-----EPVYYSVLVKGDCEI-------DENGLDQEIYRIKLPGPPILGEGKPE 1054 (1679)
T ss_pred HHHHHHHhCccceEeeeccccccccCC-----CceEEEEeeecCcch-------hhcccccceEEEeCCCCCcCCCCCCc
Confidence 999999999999999999988766553 469999999999654 35899999999999999999999999
Q ss_pred CccchhhhhcccccccccCCccchHHHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchhhhhhcccchhhHHHHH
Q 001004 561 NQNHAIIFTRGEGLQTIDMNQDNYMEESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAWFMSNQETSFVTIG 640 (1192)
Q Consensus 561 NQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~f~a~qE~sFvTl~ 640 (1192)
|||||||||||||||||||||||||||||||||||+||++.|.|.+||||||+|||||||||||||||||||||||||||
T Consensus 1055 NQNhaiiFtRGE~iQtIDmNQDnYlEE~lKmRnlL~EF~~~~~g~r~ptIlG~RE~IFt~svssLa~fms~qEqSFvTlg 1134 (1679)
T KOG0916|consen 1055 NQNHAIIFTRGEAIQTIDMNQDNYLEEALKMRNLLQEFEELHLGIRPPTILGAREHIFTGSVSSLAWFMSGQEQSFVTLG 1134 (1679)
T ss_pred ccCceeeeecchhhheecccchHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhheecCCchHHHHHHccCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeeeeeeccccccCccccccch
Q 001004 641 QRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISLFE 720 (1192)
Q Consensus 641 qR~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EYiQcGKGRDvG~~qI~~Fe 720 (1192)
||+||+|+||||||||||||||+||+||||||||||||||||||||||||||||||||||||||||||||||||||++||
T Consensus 1135 qR~LA~p~~vr~HYGHPD~~drif~~TRGGvSKAsk~inlsEDIfAG~n~tlRgG~itH~EYiQvGKGRDvGlnqI~~Fe 1214 (1679)
T KOG0916|consen 1135 QRTLANPGGVRLHYGHPDVFDRIFHITRGGVSKASKGINLSEDIFAGFNATLRGGNITHHEYIQVGKGRDVGLNQISNFE 1214 (1679)
T ss_pred HHHhccccceeeecCCCcHhhhhhhhccccchHhhcccccchHhhhhhhHHhhCCCcccceeeecccccccCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCccccchhhHHhhccccchhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCchh
Q 001004 721 AKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYVTTIGFYFSTLLTVLTVYVFLYGRLYLILSGLEKGLSTQPAIRDNKPL 800 (1192)
Q Consensus 721 aKIa~GnGEQ~LSRdvyrLG~~ldffRmLSfYyt~~GFy~n~~~~vltV~~fly~~lylalsg~e~~~~~~~~~~~~~~l 800 (1192)
||||+|||||+||||||||||||||||||||||||||||+|||+||+|||+||||++|+++||+|+.+...+...++.+|
T Consensus 1215 aKia~G~GEQ~LSRd~YrLG~~ldffRmLSfyftt~GF~~n~m~ivltVy~Fl~GrlYl~lsg~~~~~~~~~~~~~~~~l 1294 (1679)
T KOG0916|consen 1215 AKIANGNGEQTLSRDYYRLGTQLDFFRMLSFYFTTVGFYFNNMFIVLTVYLFLYGRLYLVLSGYEKDISLTASPRGCYAL 1294 (1679)
T ss_pred hhhcCCCcchhhhHHHHHhcccccHHHHHHHHhccccHHHHhHHHHHHHHHHHHHhHHHHHhhhhhccccccCCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777778888999
Q ss_pred hhhccchhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeEEeeeeEeEeecccccccceeeccCCceEE
Q 001004 801 QVALASQSFVQIGFLMALPMMMEIGLERGFRNALSDFILMQLQLAAVFFTFSLGTKTHYYGRTLLHGGAEYRGTGRGFVV 880 (1192)
Q Consensus 801 ~~~l~~q~i~qlg~l~~lPm~~~~~lE~G~~~A~~~~~~~~l~la~vF~~F~~gt~~h~~~~~il~GGAkY~aTGRGFvv 880 (1192)
+.++++|||||+|+++++||+||+++||||++|+.+|++||+||||+||||+||||+|||+|||+|||||||||||||||
T Consensus 1295 ~~aL~~qsifqv~~~~~lPmv~e~~lErGf~~A~~~f~~mqlqLa~vF~tF~~gt~~hy~~rtllhGGAkYr~TGRGFvv 1374 (1679)
T KOG0916|consen 1295 EPALAWQSIFQVGFIMFLPMVMEIGLERGFLRALSRFIKMQLQLAPVFFTFSLGTYTHYFGRTLLHGGAKYRATGRGFVV 1374 (1679)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHheeeeccchhHhhhhHhhcCCeeeeccCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecchhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHhhcccccCCCCccchhhHhhHHH
Q 001004 881 FHAKFAENYRLYSRSHFVKGIELMILLLVYHILGNSYRGVVAFLLITVSIWFMVGTWLFAPFLFNPSGFEWQKIIDDWTD 960 (1192)
Q Consensus 881 ~h~~F~~~Y~~YarSHf~~g~el~~lLivy~~yg~~~~~~~~y~~~t~s~W~~~~swl~aPf~FNP~gF~w~k~~~D~~d 960 (1192)
.|++|++|||+|||||||||+|+++||+||.+||+.++++.+|++.|+|+||+++|||||||+||||||+|+|+|+||+|
T Consensus 1375 ~h~~FsenYrlysrshfvkg~el~lmLlvy~~fg~~~~~~~~y~~~~i~~Wf~v~swlfAPFlFNPsgF~W~~~v~D~~d 1454 (1679)
T KOG0916|consen 1375 FHAKFSENYRLYSRSHFVKGSELMLLLLVYQIFGPAYRSSTVYILITISFWFLVGSWLFAPFLFNPSGFEWQKFVDDYRD 1454 (1679)
T ss_pred EeccHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCchhHHHHHHHhhhhccCcchhhhHHHhhhhhhhhheeeeeeecccc-CCcceeehhhHHHHHH
Q 001004 961 WNKWISNRGGIGVPPEKSWESWWEKEQRHLLYSGKRGIIVEILLSLRFFMYQYGLVYHLSFTK-STQNFLVYGASWVVII 1039 (1192)
Q Consensus 961 w~~Wl~~~ggi~~~~~~SW~sWw~~E~~~lr~tg~~gk~~eiil~lRffi~qygivy~L~i~~-~~ksi~Vy~lsW~vi~ 1039 (1192)
|++||++|||+|+++++||++||++|++|++++|.||+++||++++|||+||||+||+||+.. .++++.||++||++++
T Consensus 1455 ~~rWl~~rG~~~~~~~~SW~~ww~~e~~hl~~~~~~G~~~Ei~l~l~f~~f~~~~~~~ln~~~g~~~~~~v~~~s~~~i~ 1534 (1679)
T KOG0916|consen 1455 WIRWLWSRGGIGVHAEKSWESWWEEEQEHLTGSGRRGRFLEIILPLRFFFFQYGIVYFLNIQPGTNTSLRVYILSWAPIA 1534 (1679)
T ss_pred HHHHHHhcCCCCCCccccHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhhheeeEEEeccCCCCceEeehhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 5999999999999999
Q ss_pred HHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHhhHHHHHHHHHHhhhchhc
Q 001004 1040 FVLLLVKGMSVGRRRFSANFQLLFRMIKGLVFISFITIFIILIAIPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQR 1119 (1192)
Q Consensus 1040 ~~~~l~~~~s~~rrk~sa~~ql~~Rlik~llfl~~vaviivl~~l~~ltv~Difa~lLAflptGWGll~Iaqa~rp~~~~ 1119 (1192)
++++++++++++++|+++++|+++|++|+++|++++.+++++..++++++.|+|+|++||+|||||+++|+|++||+.++
T Consensus 1535 ~v~~~~~~~~~~~kk~g~~~~~~~r~i~~~~~~~~~~v~~~l~~~~~~~~~d~~~~~la~~~t~~~~l~i~~~~r~~~~~ 1614 (1679)
T KOG0916|consen 1535 AVLFLFKLLGMCRKKFGAVFALLARFIKVLVFLLFFEVMWVLEGWSFLTTVDLFVSILAFHPTGWGLLLIAQLTREVKKD 1614 (1679)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhchhhcccccchhhhccccCcc
Q 001004 1120 GGIWESIKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKE 1183 (1192)
Q Consensus 1120 ~~~W~~V~~LAr~yD~~~G~~lf~Pia~LSw~Pfvs~~QTRlLFN~aFSrgl~Is~il~g~~~~ 1183 (1192)
.+.|++|+.+||+||++||++||+|+|+|+||||+++|||||||||||||||||++||+|++++
T Consensus 1615 ~~~W~~~~~~~~ayd~~mg~li~~p~a~l~w~Pfi~~fqtr~LFn~afSR~l~i~~Il~gk~~~ 1678 (1679)
T KOG0916|consen 1615 LGWWSGVWYLARAYDFFMGHLIFFPVAPLSWFPFISEFQTRMLFNQAFSRGLRISRILAGKQKK 1678 (1679)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccccCCcchhhccCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 2
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=100.00 E-value=4.6e-275 Score=2392.81 Aligned_cols=698 Identities=55% Similarity=0.873 Sum_probs=638.7
Q ss_pred cCCCCChhhhHhHhhhhccCCCCCCCCccccccccceeecccccceeecccccccCCCC--CcccHHHHHHhhCchhhhh
Q 001004 287 MDVPSNLEAIRRISFFSNSLFMDMPSAPKVRNMLSFSVLTPYYSEDVLFSINGLEKPNE--DGVSILFYLQKIFPDEWMN 364 (1192)
Q Consensus 287 ~~~P~n~EArRRisFFanSL~m~mP~a~~V~~M~sfSVLtPyY~E~Vl~Sl~eL~~e~e--dgvsiL~YL~~i~PdEW~N 364 (1192)
+.+|+|+||||||+||||||+||||+||||++|||||||||||+|||+||++||++||| ||||+|+|||+||||||+|
T Consensus 1 ~~~P~~~EA~RRisFFanSL~~~mP~~~~V~~M~sfsVLtP~Y~E~Vl~Sl~eL~ke~e~~~~vtlL~YLk~l~p~EW~n 80 (817)
T PF02364_consen 1 EFFPRNSEARRRISFFANSLFMPMPEPPPVEKMPSFSVLTPYYSEKVLYSLKELIKENEQNDGVTLLEYLKQLYPDEWEN 80 (817)
T ss_pred CCCCCchHHHHHHHHHHHhcCCCCcCCCchhhccccccccccccceeccCHHHhhhcccccCCccHHHHHHHHChHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhcCCchhhh-------------hh-----------------chHHHHHHhhhhhcccccccccccccccHHHHHHH
Q 001004 365 FLERVNCSSEEEL-------------RA-----------------SEELEEELRLWASYRGQTLTKTVRGMMYYRKALEL 414 (1192)
Q Consensus 365 Fler~~~~~~~~~-------------~~-----------------~~~~~~elRlWAS~RgQTL~RTVrGmM~Y~~ALkl 414 (1192)
|+||+|++++++. |. .++..+++|+|||+|||||||||+|||||++|||+
T Consensus 81 F~er~k~~~~e~~~~~~~~~~~~~~~was~r~qtL~rtv~Gfm~~~~a~~LrtrLWASlR~QTLyRTV~G~m~y~~Alkl 160 (817)
T PF02364_consen 81 FVERTKRLAEESDAEESSEKEEELRLWASYRGQTLPRTVRGFMYYEPAYTLRTRLWASLRGQTLYRTVSGFMNYSKALKL 160 (817)
T ss_pred HHHHhcccchhhhhhccccchhhhhHHHHhcccCCCchhhhhhhhhHHHHHHhhhhhccHHHhhhhhhhhhhhHHHHHhh
Confidence 9999999874311 10 25677999999999999999999999999999999
Q ss_pred hhhhcccChHHHHhhhhhhcccchhhccchhhHHHHHHHHHhCcccEEEEeeeccCCCCCCccchHHHHHHHHhCCCcEE
Q 001004 415 QAFLDMAKDEELMKGYKAAELNSEEQSKSETSLWAQCQAVSDMKFTYVVSCQQYGTHKRSGDARAKDILRLMTTYPSLRV 494 (1192)
Q Consensus 415 l~~lE~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~KF~yVVscQ~Yg~~k~~~~~~a~di~~Lm~~~P~LrV 494 (1192)
|+++|+++..+..+ .+.+.++++++++|++||+||||||+||+|| +++|+||+.||++||+|||
T Consensus 161 l~~~e~~~~~~~~~-------------~~~~~~~~~~~~~a~~KF~yVVs~Q~yg~~~---~~~a~~i~~Lm~~~P~LrV 224 (817)
T PF02364_consen 161 LYRVENPSIEQMFG-------------GNYESLERELEAMADRKFTYVVSCQRYGKFK---KEEAEDIEFLMRAYPSLRV 224 (817)
T ss_pred HhhccCCchhhhcc-------------CchHHHHHHHHHHHhcCCCEEEecchhcCCC---hHHHHHHHHHHHhCCceEE
Confidence 99999998765433 2346778899999999999999999999999 7789999999999999999
Q ss_pred EEeeecccccccccccccceEEEEEEeccCCCCCCCCCccccccccceEEEeecCCCcccCCCCCcCccchhhhhccccc
Q 001004 495 AYIDEVEETSKDKTKKTVQKVYYSALAKAAAPTKSIDSSETVQTLDQVIYRIKLPGPAILGGGKPENQNHAIIFTRGEGL 574 (1192)
Q Consensus 495 AYiDe~~~~~~~~~~~~~~~~yySvLik~~~~~~~~d~~~~~~~~~~eiYRIkLPG~piLGEGKpeNQNhAiIFtRGE~l 574 (1192)
|||||++++.+++ +++||||||||+++.+ ++|+++|+|||||||||||||||||||||||||||||||
T Consensus 225 AYide~~~~~~~~-----~~~yYS~Lv~~~~~~~-------~~g~~~~~yri~LpG~pilGeGK~eNQNhaiiF~rGe~l 292 (817)
T PF02364_consen 225 AYIDEVPDRNGGG-----EPEYYSVLVKGDCEID-------ENGKRQEIYRIKLPGNPILGEGKPENQNHAIIFTRGEYL 292 (817)
T ss_pred EEEeeecccCCCC-----CceEEEEEecCCcccc-------ccCcccceEEEECCCCCcCCCCCccccceeEEEEccccc
Confidence 9999988654432 6899999999996543 479999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHhhhhhHHHHhhcCC-------------CCCCceEeeccceeecccchhhhhhcccchhhHHHHHH
Q 001004 575 QTIDMNQDNYMEESLKMRNLLQEFLKKHD-------------GVRYPTILGVREHIFTGSVSSLAWFMSNQETSFVTIGQ 641 (1192)
Q Consensus 575 QtIDmNQDnYlEEaLKmRNlL~EF~~~~~-------------g~~~~tIlG~REhIFTgsvssLa~f~a~qE~sFvTl~q 641 (1192)
|||||||||||||||||||||+||++.+. +.+||||||+|||||||||||||||||+||||||||+|
T Consensus 293 Q~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~~vg~L~~~aa~qE~~F~Tl~q 372 (817)
T PF02364_consen 293 QTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSENVGSLGDFAAGQEQSFGTLFQ 372 (817)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecCCcchHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999998773 26899999999999999999999999999999999999
Q ss_pred HhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeeeeeeccccccCccccccchh
Q 001004 642 RLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISLFEA 721 (1192)
Q Consensus 642 R~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EYiQcGKGRDvG~~qI~~Fea 721 (1192)
|+||+|+ |||||||||||||+||+||||||||||||||||||||||||+|||||||||||||||||||||||||++|||
T Consensus 373 R~la~p~-~rlHYGHPD~~n~~f~~TRGGvSKAsk~lhLsEDIfaG~n~~lRGG~i~h~ey~qcGKGRD~Gf~~I~~F~~ 451 (817)
T PF02364_consen 373 RTLANPL-VRLHYGHPDVFNRIFMTTRGGVSKASKGLHLSEDIFAGMNATLRGGRIKHCEYIQCGKGRDVGFNSILNFET 451 (817)
T ss_pred HHHhcch-hhccCCCchhhhhhheeccCccchHhhcccccHHHHHHHHHHhcCCceeehhhhhcccccccCchhhhhhHh
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccccchhhHHhhccccchhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCc---
Q 001004 722 KIANGNGEQTLSRDIYRLGHRFDFFRMLSCYVTTIGFYFSTLLTVLTVYVFLYGRLYLILSGLEKGLSTQPAIRDNK--- 798 (1192)
Q Consensus 722 KIa~GnGEQ~LSRdvyrLG~~ldffRmLSfYyt~~GFy~n~~~~vltV~~fly~~lylalsg~e~~~~~~~~~~~~~--- 798 (1192)
|||+|||||+||||+|||||||||||||||||||||||+|||+||+|||+|+| +|++|+|++.++. .|.++.+.
T Consensus 452 KI~~G~GEQ~LSRe~yrLg~~ld~~R~LSfyy~~~Gf~~n~~~i~lsv~~f~~--~~~~L~~l~~~~~-~~~~~~~~~~~ 528 (817)
T PF02364_consen 452 KIASGMGEQMLSREYYRLGTRLDFFRFLSFYYAHPGFYINNMFIVLSVYLFLY--VYLNLSGLEHESI-ICAYDKNTDVL 528 (817)
T ss_pred HhcCCccchhhhHHHHHhhccCCHHHHHHHHhcCccHhHhhHHHHHHHHHHHH--HHHHHHHHHHHHH-hhhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999 6667778876653 34443331
Q ss_pred ------hhhh-----hccchhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeEEeeeeEeEeecccccc
Q 001004 799 ------PLQV-----ALASQSFVQIGFLMALPMMMEIGLERGFRNALSDFILMQLQLAAVFFTFSLGTKTHYYGRTLLHG 867 (1192)
Q Consensus 799 ------~l~~-----~l~~q~i~qlg~l~~lPm~~~~~lE~G~~~A~~~~~~~~l~la~vF~~F~~gt~~h~~~~~il~G 867 (1192)
.|+. .+++||+||+|+++++||++|+++|+|+++|+.+|+.||+||||+||||+||||+|||++||+||
T Consensus 529 ~~~g~~~l~p~~~~~~~~~~si~q~g~l~~lPl~~q~~lE~G~~~A~~~~~~~~lslsp~F~vF~~qt~a~~~~~~l~~G 608 (817)
T PF02364_consen 529 EPIGCYNLQPVLDWIARNVQSIFQLGFLSFLPLIVQELLERGFWKALTRFFKHQLSLSPVFEVFSCQTYAHYFGRTLLHG 608 (817)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccchheeeeeehhhhhhhhhhhcC
Confidence 1333 35789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCceEEeecchhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHhhcccccCCC
Q 001004 868 GAEYRGTGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLLVYHILGNSYRGVVAFLLITVSIWFMVGTWLFAPFLFNPS 947 (1192)
Q Consensus 868 GAkY~aTGRGFvv~h~~F~~~Y~~YarSHf~~g~el~~lLivy~~yg~~~~~~~~y~~~t~s~W~~~~swl~aPf~FNP~ 947 (1192)
|||||||||||||+|++|++||++|||||||+|+|+++||++|.++ +|...||++|++++|||+||||||||
T Consensus 609 GAkYiaTGRGF~i~r~~F~~lY~~YA~Sh~y~G~el~llLl~~~~~--------~y~~~~~~~W~~v~sll~aPFiFNP~ 680 (817)
T PF02364_consen 609 GAKYIATGRGFVITRIPFAELYSRYARSHFYKGFELLLLLLFYTLT--------MYIPATLSFWFLVISLLFAPFIFNPH 680 (817)
T ss_pred ccEEEecCCceEEEeccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999877775 89999999999999999999999999
Q ss_pred CccchhhHhhHHHHHHhhccCCCCCCCCCCchhHHHHHHHhhh--------------------hccCcchhhhHHHhhhh
Q 001004 948 GFEWQKIIDDWTDWNKWISNRGGIGVPPEKSWESWWEKEQRHL--------------------LYSGKRGIIVEILLSLR 1007 (1192)
Q Consensus 948 gF~w~k~~~D~~dw~~Wl~~~ggi~~~~~~SW~sWw~~E~~~l--------------------r~tg~~gk~~eiil~lR 1007 (1192)
||+|+|+++||+||++||++ |++.++++||++||++|++|+ |+++....+.|+++.++
T Consensus 681 ~F~w~~~~~Dy~dw~~Wl~~--g~~~~~~~SW~~w~~~~~~~~tg~k~k~~~~~~e~~~~~~~r~~~~~~~~~ei~~~l~ 758 (817)
T PF02364_consen 681 QFDWQKFFVDYRDWLRWLSR--GNSRPHDNSWISWWREERSRITGFKRKILEDISEKRFGDHLRASFFNLLFSEIILPLR 758 (817)
T ss_pred cCchhHHHHhHHHHHHHHhc--CCCCccccccHHHHHHHHHHhccccceeeccchhccccccccceeeehhHHHHHHHHH
Confidence 99999999999999999996 689999999999999998755 33344455566666677
Q ss_pred hhhhheeeeeeeccccCCc
Q 001004 1008 FFMYQYGLVYHLSFTKSTQ 1026 (1192)
Q Consensus 1008 ffi~qygivy~L~i~~~~k 1026 (1192)
+++++++.++++++..+.+
T Consensus 759 ~~~~~~~~y~finsq~~~~ 777 (817)
T PF02364_consen 759 FFIFQFIAYLFINSQNGVK 777 (817)
T ss_pred HHHHHHhhheEEEcccCCC
Confidence 7777777777776655433
No 3
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=98.15 E-value=7.1e-07 Score=109.81 Aligned_cols=42 Identities=60% Similarity=0.911 Sum_probs=38.4
Q ss_pred HHHHhhhhhcccccccccccccccHHHHHHHhhhhcccChHH
Q 001004 384 EEELRLWASYRGQTLTKTVRGMMYYRKALELQAFLDMAKDEE 425 (1192)
Q Consensus 384 ~~elRlWAS~RgQTL~RTVrGmM~Y~~ALkll~~lE~~~~~~ 425 (1192)
..++|.|||||||||+|||+|||||++|++|+++++.+...+
T Consensus 101 ~~~~~~was~r~qtL~rtv~Gfm~~~~a~~LrtrLWASlR~Q 142 (817)
T PF02364_consen 101 EEELRLWASYRGQTLPRTVRGFMYYEPAYTLRTRLWASLRGQ 142 (817)
T ss_pred hhhhhHHHHhcccCCCchhhhhhhhhHHHHHHhhhhhccHHH
Confidence 467999999999999999999999999999999999876554
No 4
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=86.91 E-value=0.33 Score=62.31 Aligned_cols=188 Identities=19% Similarity=0.212 Sum_probs=114.4
Q ss_pred CCCCcCccchhhhhcccccccccCCccchHH-HHHhhhhhHHHHhhcCCCCCCceEeeccceeeccc-----chhhhhhc
Q 001004 556 GGKPENQNHAIIFTRGEGLQTIDMNQDNYME-ESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGS-----VSSLAWFM 629 (1192)
Q Consensus 556 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlE-EaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgs-----vssLa~f~ 629 (1192)
.||..|-|||+=.++||++=++|++. ..+ ++|+ +++..|.++. .+.+|+.+=+.++.. .+....+.
T Consensus 325 ~gKAGnLN~aL~~a~GEyIavlDAD~--ip~pdfL~--~~V~~f~~dP----~VglVQtp~~f~n~dp~~rnl~~~~~~~ 396 (852)
T PRK11498 325 HAKAGNINNALKYAKGEFVAIFDCDH--VPTRSFLQ--MTMGWFLKDK----KLAMMQTPHHFFSPDPFERNLGRFRKTP 396 (852)
T ss_pred cchHHHHHHHHHhCCCCEEEEECCCC--CCChHHHH--HHHHHHHhCC----CeEEEEcceeccCCchHHHhhHHHhhcc
Confidence 58999999999999999999999853 332 2222 4445665443 578888776665432 12211222
Q ss_pred ccchhhHHHHHHHhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeee-eeeeccc
Q 001004 630 SNQETSFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHE-YIQVGKG 708 (1192)
Q Consensus 630 a~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~E-YiQcGKG 708 (1192)
.-+| .|-...|+-... ....+--|+-=++.|.-...=||..-- -++||+--++....+|-++.|.. =...|-
T Consensus 397 ~e~~-~fy~~iq~g~~~-~~a~~~~Gs~aviRReaLeeVGGfd~~----titED~dlslRL~~~Gyrv~yl~~~~a~gl- 469 (852)
T PRK11498 397 NEGT-LFYGLVQDGNDM-WDATFFCGSCAVIRRKPLDEIGGIAVE----TVTEDAHTSLRLHRRGYTSAYMRIPQAAGL- 469 (852)
T ss_pred cchh-HHHHHHHhHHHh-hcccccccceeeeEHHHHHHhcCCCCC----ccCccHHHHHHHHHcCCEEEEEeccceeEE-
Confidence 2222 344455554332 334455677777777777777998742 37999999999999999999864 333332
Q ss_pred cccCccccccch---hhccCCCccccchhhHHhhccccchhhhhhhhhcccchhhHHH
Q 001004 709 RDVGLNQISLFE---AKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYVTTIGFYFSTL 763 (1192)
Q Consensus 709 RDvG~~qI~~Fe---aKIa~GnGEQ~LSRdvyrLG~~ldffRmLSfYyt~~GFy~n~~ 763 (1192)
.=.++..+- .+-+.| ..|.+.++---++..+.+..=+ +|....=++++.+
T Consensus 470 ---aPesl~~~~~QR~RWarG-~lQi~r~~~pl~~~gL~~~qRl-~y~~~~l~~l~g~ 522 (852)
T PRK11498 470 ---ATESLSAHIGQRIRWARG-MVQIFRLDNPLTGKGLKLAQRL-CYANAMLHFLSGI 522 (852)
T ss_pred ---CCCCHHHHHHHHHHHHHH-HHHHHHHhChhccCCCCHHHHH-HHHHHHHHHHHHH
Confidence 223555543 346677 5777766544567777774333 3333333444443
No 5
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.47 E-value=6 Score=46.89 Aligned_cols=134 Identities=19% Similarity=0.121 Sum_probs=69.5
Q ss_pred CCCCcCccchhhhhcccccccccCCccchHH-HHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchhhhhhcccchh
Q 001004 556 GGKPENQNHAIIFTRGEGLQTIDMNQDNYME-ESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAWFMSNQET 634 (1192)
Q Consensus 556 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlE-EaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~f~a~qE~ 634 (1192)
.||+-+.|+|+..++||++-++|. |+.++ +++ +.+.+.|+++. .+.+++.+-.+...+ +.++....++-.
T Consensus 141 ~Gka~AlN~gl~~a~~d~iv~lDA--D~~~~~d~L--~~lv~~~~~~~----~~g~v~g~~~~~~~~-~~~~~~~~~e~~ 211 (444)
T PRK14583 141 QGKAIALRMGAAAARSEYLVCIDG--DALLDKNAV--PYLVAPLIANP----RTGAVTGNPRIRTRS-TLIGRVQVGEFS 211 (444)
T ss_pred CCHHHHHHHHHHhCCCCEEEEECC--CCCcCHHHH--HHHHHHHHhCC----CeEEEEccceecCCC-cchhhHHHHHHH
Confidence 479999999999999999999986 44442 333 35666665432 233443322222221 222222222212
Q ss_pred hHHHHHHHhhccccceeee-cCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeeee
Q 001004 635 SFVTIGQRLLAHPLKVRFH-YGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYI 703 (1192)
Q Consensus 635 sFvTl~qR~LA~Pl~vR~H-YGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EYi 703 (1192)
++..+.+|.... .+.-+- =|+==.|.|.-...=||-+- -.+.||+--|+-...+|.+|.+++-.
T Consensus 212 ~~~~~~~~~~~~-~g~~~~~sG~~~~~rr~al~~vGg~~~----~~i~ED~dl~~rl~~~G~~i~~~p~a 276 (444)
T PRK14583 212 SIIGLIKRTQRV-YGQVFTVSGVVAAFRRRALADVGYWSP----DMITEDIDISWKLQLKHWSVFFEPRG 276 (444)
T ss_pred HHHHHHHHHHHH-hCCceEecCceeEEEHHHHHHcCCCCC----CcccccHHHHHHHHHcCCeEEEeecc
Confidence 222223332211 000000 02111222222223355441 24789999999999999999987743
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=82.92 E-value=2.8 Score=48.59 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=78.5
Q ss_pred EEeecCCCcccCCCCCcCccchhhhhcccccccccCCccchH-HHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccc
Q 001004 544 YRIKLPGPAILGGGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSV 622 (1192)
Q Consensus 544 YRIkLPG~piLGEGKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsv 622 (1192)
.-++.+.| .||+.|-|+|+-.++||++=.+|.+ +.+ .++|+ .+++.|+++. .+.+++..=.+-. ..
T Consensus 112 ~~i~~~~n----~Gka~aln~g~~~a~~d~i~~lDaD--~~~~~d~L~--~l~~~~~~~~----~v~~v~g~~~~~~-~~ 178 (420)
T PRK11204 112 RVIHLAEN----QGKANALNTGAAAARSEYLVCIDGD--ALLDPDAAA--YMVEHFLHNP----RVGAVTGNPRIRN-RS 178 (420)
T ss_pred EEEEcCCC----CCHHHHHHHHHHHcCCCEEEEECCC--CCCChhHHH--HHHHHHHhCC----CeEEEECCceecc-ch
Confidence 33444554 4799999999999999999998754 454 33433 6666776433 3445543322222 12
Q ss_pred hhhhhhcccchhhHHHHHH---HhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceee
Q 001004 623 SSLAWFMSNQETSFVTIGQ---RLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTH 699 (1192)
Q Consensus 623 ssLa~f~a~qE~sFvTl~q---R~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h 699 (1192)
+.++....++-.+...+.+ +.+..+ -..-|+==.+.|.....-||...- .++||.--++-...+|.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~~rr~~l~~vgg~~~~----~~~ED~~l~~rl~~~G~~i~~ 251 (420)
T PRK11204 179 TLLGRIQVGEFSSIIGLIKRAQRVYGRV---FTVSGVITAFRKSALHEVGYWSTD----MITEDIDISWKLQLRGWDIRY 251 (420)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhCCc---eEecceeeeeeHHHHHHhCCCCCC----cccchHHHHHHHHHcCCeEEe
Confidence 2333332222222222222 222111 111133223444444445676532 468999999998889999988
Q ss_pred eeeeee
Q 001004 700 HEYIQV 705 (1192)
Q Consensus 700 ~EYiQc 705 (1192)
+.-..|
T Consensus 252 ~p~~~~ 257 (420)
T PRK11204 252 EPRALC 257 (420)
T ss_pred ccccEE
Confidence 776555
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=52.08 E-value=56 Score=38.99 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCCCcCccchhhhhcccccccccCCccchHH-HHHhhhhhHHHHhhc
Q 001004 556 GGKPENQNHAIIFTRGEGLQTIDMNQDNYME-ESLKMRNLLQEFLKK 601 (1192)
Q Consensus 556 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlE-EaLKmRNlL~EF~~~ 601 (1192)
.||+.+-|+|+=.++||++ +=|++|+.++ ++++ ++++.|+++
T Consensus 117 ~Gka~AlN~gl~~s~g~~v--~~~DaD~~~~~d~L~--~l~~~f~~~ 159 (439)
T TIGR03111 117 QGKAKALNAAIYNSIGKYI--IHIDSDGKLHKDAIK--NMVTRFENN 159 (439)
T ss_pred CCHHHHHHHHHHHccCCEE--EEECCCCCcChHHHH--HHHHHHHhC
Confidence 4899999999999999995 5556888874 4554 788888743
No 8
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=50.33 E-value=55 Score=31.88 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHH-HHHhhH
Q 001004 1031 YGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVFISFITIFIILIAIPHMTFKDILLCIL-AFMPTG 1103 (1192)
Q Consensus 1031 y~lsW~vi~~~~~l~~~~s~~rrk~sa~~ql~~Rlik~llfl~~vaviivl~~l~~ltv~Difa~lL-AflptG 1103 (1192)
=|.||++++.+...+|.+.-.. ..-...=.+.+++|++.+.+.+.+..-.+|++......++ |++|.|
T Consensus 13 Egisll~Ll~iamplKy~~~~~-----~~v~~~G~iHG~lF~~Yl~~~~~~~~~~rW~~~~~~~~llas~iPfg 81 (92)
T PF12823_consen 13 EGISLLLLLFIAMPLKYLAGNP-----EAVKIIGPIHGFLFMLYLVAALDLASKYRWSLKRTLLALLASVIPFG 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-----chhhhcchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHccccc
Confidence 3678888887777777543111 0112233568999999999998888889999998766665 578865
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=47.23 E-value=16 Score=37.86 Aligned_cols=138 Identities=18% Similarity=0.131 Sum_probs=79.5
Q ss_pred CCCCcCccchhhhhcccccccccCCccchHHHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccch-hhhhhcccchh
Q 001004 556 GGKPENQNHAIIFTRGEGLQTIDMNQDNYMEESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVS-SLAWFMSNQET 634 (1192)
Q Consensus 556 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvs-sLa~f~a~qE~ 634 (1192)
.||.-|-|+|+=..+||++-.+|. |.++++. .+.++++.+++.. .+.+++.+-+...++.. .+..-......
T Consensus 70 ~~~~~~~n~~~~~a~~d~i~~lD~--D~~~~~~-~l~~l~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (234)
T cd06421 70 HAKAGNLNNALAHTTGDFVAILDA--DHVPTPD-FLRRTLGYFLDDP----KVALVQTPQFFYNPDPFDWLADGAPNEQE 142 (234)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEcc--ccCcCcc-HHHHHHHHHhcCC----CeEEEecceEEecCCcchhHHHHHHHHHH
Confidence 467788999999999999999985 7888653 5568888886522 45666655443333321 22322222333
Q ss_pred hHHHHHHHhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeeeeee
Q 001004 635 SFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQV 705 (1192)
Q Consensus 635 sFvTl~qR~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EYiQc 705 (1192)
.|.+..+.. .++.++-.=-|.-=.+.|..+..=||... ..+.||..-+......|.+|.+.....|
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~g~~~~~r~~~~~~ig~~~~----~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 143 LFYGVIQPG-RDRWGAAFCCGSGAVVRREALDEIGGFPT----DSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred HHHHHHHHH-HhhcCCceecCceeeEeHHHHHHhCCCCc----cceeccHHHHHHHHHcCceEEEecCccc
Confidence 333222111 11111111113333444444444466652 2467999999999999999988665444
No 10
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=45.34 E-value=3.2e+02 Score=35.23 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCCcCccchhhhhcccccccccCCccchH-HHHHhhhhhHHHHhhcCCCCCCceEeeccceeecc-----cchhhhhhcc
Q 001004 557 GKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTG-----SVSSLAWFMS 630 (1192)
Q Consensus 557 GKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTg-----svssLa~f~a 630 (1192)
||+-|=|||+=.++||++=++|+.. .. .++|+ +++..|+++. .+++++.+=+.++. +.+. ...+.
T Consensus 215 ~KAgnLN~al~~a~gd~Il~lDAD~--v~~pd~L~--~~v~~f~~dp----~v~~Vqtp~~f~~p~~~~~nl~~-~~~~~ 285 (713)
T TIGR03030 215 AKAGNINNALKHTDGELILIFDADH--VPTRDFLQ--RTVGWFVEDP----KLFLVQTPHFFVSPDPIERNLGT-FRRMP 285 (713)
T ss_pred CChHHHHHHHHhcCCCEEEEECCCC--CcChhHHH--HHHHHHHhCC----CEEEEeCCeeccCCCHHhhhhHH-HHHhh
Confidence 6999999999999999999999754 33 33332 5556775433 56777665333321 2222 12222
Q ss_pred cchhhHHHHHHHhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeeeeee
Q 001004 631 NQETSFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQV 705 (1192)
Q Consensus 631 ~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EYiQc 705 (1192)
++...|-...|+-... .+..+.-|+-=++.|.-...=||..- -.++||.--|+-..-+|-++.+..=..+
T Consensus 286 ~e~~~f~~~i~~g~~~-~~~~~~~Gs~~~iRR~al~~iGGf~~----~~vtED~~l~~rL~~~G~~~~y~~~~~~ 355 (713)
T TIGR03030 286 NENELFYGLIQDGNDF-WNAAFFCGSAAVLRREALDEIGGIAG----ETVTEDAETALKLHRRGWNSAYLDRPLI 355 (713)
T ss_pred hHHHHHHHHHHHHHhh-hCCeeecCceeEEEHHHHHHcCCCCC----CCcCcHHHHHHHHHHcCCeEEEeccccc
Confidence 2222333333443332 33444557766777776777788863 3479999999988889999888764444
No 11
>CHL00032 ndhA NADH dehydrogenase subunit 1
Probab=44.56 E-value=2.7e+02 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=21.3
Q ss_pred cchHHHHHHH--HHHHHHHHHHHHHHHHHh
Q 001004 1121 GIWESIKTLA--RGYEIVMGLLLFTPVAFL 1148 (1192)
Q Consensus 1121 ~~W~~V~~LA--r~yD~~~G~~lf~Pia~L 1148 (1192)
+.=+++|+++ -.||..++++++++...-
T Consensus 157 s~iGa~R~~~q~isyEv~l~l~ii~~~l~~ 186 (363)
T CHL00032 157 SFLGGLRAAAQSISYEIPLTLCVLSISLLS 186 (363)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346777777 479999999999987653
No 12
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=38.84 E-value=3.5e+02 Score=27.13 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc------cccHhHHHHHHHHHHhhHHHHHHHHHHhhhchhcccchHHHHHHHHHHH
Q 001004 1061 LLFRMIKGLVFISFITIFIILIAIP------HMTFKDILLCILAFMPTGWGLLLIAQACKPLMQRGGIWESIKTLARGYE 1134 (1192)
Q Consensus 1061 l~~Rlik~llfl~~vaviivl~~l~------~ltv~Difa~lLAflptGWGll~Iaqa~rp~~~~~~~W~~V~~LAr~yD 1134 (1192)
...+.+.++.+..++.+++.++.-. ..+..+....+.+ +-.|...-..+..+ +. .-|...+ +-.-+
T Consensus 7 ~i~~~~iGi~ig~~i~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ig~~~gl~s~if----~~-e~~s~~~--~~iiH 78 (136)
T PF11457_consen 7 IIKGFLIGIGIGSFISLIISLFYGQGFYPSFPISVSSILSVLVA-VLIGAVFGLASLIF----EI-ERWSLLK--QTIIH 78 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCccHHHHHHHHHH-HHHHHHHHHHHHHH----cc-cchhHHH--HHHHH
Confidence 3445556655555555555554443 3344555555534 22232221122222 22 3355444 35678
Q ss_pred HHHHHHHHHHHHHhh-hcccc
Q 001004 1135 IVMGLLLFTPVAFLA-WFPFV 1154 (1192)
Q Consensus 1135 ~~~G~~lf~Pia~LS-w~Pfv 1154 (1192)
++...+++.|++.+. |+|.-
T Consensus 79 f~~~~~~~~~~~~~~gW~~~~ 99 (136)
T PF11457_consen 79 FIITYAIFLILAYLLGWFPLS 99 (136)
T ss_pred HHHHHHHHHHHHHHhCCcchh
Confidence 889999999999997 99984
No 13
>PHA03048 IMV membrane protein; Provisional
Probab=35.25 E-value=56 Score=32.16 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=18.6
Q ss_pred cchhhhhhhhhcccchhhHHHHHHHHHHHH
Q 001004 743 FDFFRMLSCYVTTIGFYFSTLLTVLTVYVF 772 (1192)
Q Consensus 743 ldffRmLSfYyt~~GFy~n~~~~vltV~~f 772 (1192)
||.+++++=||+++=.-==-++++-++++|
T Consensus 1 MDi~~~~~ny~S~vli~GIiLL~~aCIfAf 30 (93)
T PHA03048 1 MDIMGMISNYFSTALIGGIILLAASCIFAF 30 (93)
T ss_pred CCHHHHhhcccchHHHHHHHHHHHHHHHhh
Confidence 699999999999873333333333444433
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=29.85 E-value=8.2e+02 Score=31.89 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=75.8
Q ss_pred CCCCcCccchhhh--hcccccccccCCccchH-HHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchhhhhhcccc
Q 001004 556 GGKPENQNHAIIF--TRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAWFMSNQ 632 (1192)
Q Consensus 556 EGKpeNQNhAiIF--tRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~f~a~q 632 (1192)
+.|.-|-|+++=- .++||+=+.|++- .+ -++++ .+.+.++.+. .+.+|-.+=.+. +.-+-++...+--
T Consensus 204 ~~KaGNl~~~~~~~~~~~eyivvLDADs--~m~~d~L~--~lv~~m~~dP----~vGlVQt~~~~~-n~~slfaR~qqf~ 274 (691)
T PRK05454 204 GRKAGNIADFCRRWGGAYDYMVVLDADS--LMSGDTLV--RLVRLMEANP----RAGLIQTLPVAV-GADTLFARLQQFA 274 (691)
T ss_pred CccHHHHHHHHHhcCCCcCEEEEEcCCC--CCCHHHHH--HHHHHHhhCc----CEEEEeCCccCc-CCCCHHHHHHHHH
Confidence 5688898888766 4459999999853 33 23333 6666775432 334443221111 1222233222100
Q ss_pred hhhHHHHHHHhhccccceeeec-CCCcccccccccccCCccccc-----cccccchhhhccccccccCcceeeeeeee
Q 001004 633 ETSFVTIGQRLLAHPLKVRFHY-GHPDVFDRLFHLTRGGVSKAS-----KVINLSEDIFAGFNSTLREGNVTHHEYIQ 704 (1192)
Q Consensus 633 E~sFvTl~qR~LA~Pl~vR~HY-GHPDvfd~iF~~TRGGiSKAs-----k~inLsEDIFaG~N~~lRgG~I~h~EYiQ 704 (1192)
...++.++++-++.=-+.--+| ||-=++++.-+...||..+=. .+--||||+--|.-.-.+|-+|.+...+.
T Consensus 275 ~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~ 352 (691)
T PRK05454 275 TRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLP 352 (691)
T ss_pred HHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccc
Confidence 1112222221111100011123 887788877666666553311 13459999999999888999999987753
No 15
>PF15469 Sec5: Exocyst complex component Sec5
Probab=27.81 E-value=1.7e+02 Score=30.87 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=46.4
Q ss_pred chHHHHHHHHhhcC---CcHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhc
Q 001004 101 KIPIALDMAKDSNG---RDRELKKRLNSDNYMHRAVQECYASFKIIINVLVLGEREKEVINEIFSKVDEHIRE 170 (1192)
Q Consensus 101 ki~~Al~~a~~~~~---~d~~L~~~i~~d~y~~~Av~e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~ 170 (1192)
++..|+..-.+++- =...|.+-|++.+|- .+..-|.-.+.++..... +..++..++.+||+.|++
T Consensus 72 ~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~--~~i~dY~kak~l~~~~~~---~~~vf~~v~~eve~ii~~ 139 (182)
T PF15469_consen 72 KLRNALEFLQRNRFLFNLPSNLRECIKKGDYD--QAINDYKKAKSLFEKYKQ---QVPVFQKVWSEVEKIIEE 139 (182)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHH--HHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Confidence 35556666655553 446788899999985 457788988887764432 566789999999998853
No 16
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=24.73 E-value=1.6e+02 Score=37.42 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=45.9
Q ss_pred hhhheeeeeeeccccCCcceeehhhHHHHHHHHHH--HHhhhhcccccccccchH--------HHHHHHHHHHHHHHHHH
Q 001004 1009 FMYQYGLVYHLSFTKSTQNFLVYGASWVVIIFVLL--LVKGMSVGRRRFSANFQL--------LFRMIKGLVFISFITIF 1078 (1192)
Q Consensus 1009 fi~qygivy~L~i~~~~ksi~Vy~lsW~vi~~~~~--l~~~~s~~rrk~sa~~ql--------~~Rlik~llfl~~vavi 1078 (1192)
+.-++|..|+..+.. .|++.|.|+.+|+. +...+.+|-|+++++.+- .+|+..-.++..++..+
T Consensus 481 ~~~~~~g~y~~~ll~------~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~ll~i 554 (629)
T KOG3659|consen 481 PFITAGGGYVFPLLI------DYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVFLLFI 554 (629)
T ss_pred hhccccceeeehhhH------HHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHHHHHH
Confidence 344788888888754 78999999988874 445667888889998753 47777766655554444
Q ss_pred H
Q 001004 1079 I 1079 (1192)
Q Consensus 1079 i 1079 (1192)
+
T Consensus 555 f 555 (629)
T KOG3659|consen 555 F 555 (629)
T ss_pred H
Confidence 3
No 17
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=24.52 E-value=4.1e+02 Score=31.77 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=61.0
Q ss_pred HhccChhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH--HHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhC
Q 001004 122 RLNSDNYMHRAVQECYASFKIIINVLVLGEREKEVINEIFS--KVDEHIREDNLLTELNMSALPSLYEQCVELIECLLAN 199 (1192)
Q Consensus 122 ~i~~d~y~~~Av~e~y~s~k~il~~ll~~~~~~~ii~~i~~--~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~ 199 (1192)
.+..++-...-+..-++.+|.+|.+|| ++..+.-|....+ -|.+-+++|.+- +..+..-+.++++-+-.|
T Consensus 43 el~~~~~~~~~~~~Ll~~ike~L~~ll-~~~~~~~I~e~LD~~li~Qq~~~g~~D-------~~~l~~~i~~~l~~~CAP 114 (441)
T PF05794_consen 43 ELEQDPPDYSRLPQLLEEIKEILLSLL-PSRLRQEIEEVLDLELIRQQLEHGVLD-------LVKLARFIISLLKKLCAP 114 (441)
T ss_pred HHhhCCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHCChHHHHHHHhcCCcC-------HHHHHHHHHHHHHHhCCC
Confidence 334443344456788999999999999 6666554544433 255566666552 666666666666665443
Q ss_pred C-----------------cchhHHHHHHHHHHHHHHHHhhhccC
Q 001004 200 K-----------------KEDKDRVVIVLLNMLEVVTRDIMEDD 226 (1192)
Q Consensus 200 ~-----------------~~~~~~vv~~l~~l~e~v~~d~~~~~ 226 (1192)
- +.....+|+.|+.+++++ |.|+-+
T Consensus 115 ~RD~~v~~l~~~~~~~~~~~~~~~~V~~lr~if~~l--e~MklD 156 (441)
T PF05794_consen 115 MRDEEVKALVEKIEEGCTESSATDIVDGLRFIFEIL--ELMKLD 156 (441)
T ss_pred CCcHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH--HHHHHH
Confidence 2 112357999999999997 677655
No 18
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=24.50 E-value=45 Score=31.79 Aligned_cols=75 Identities=31% Similarity=0.568 Sum_probs=45.1
Q ss_pred cCCCCCcCccchhhhhcccccccccCCcc------chHHHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchhhhh
Q 001004 554 LGGGKPENQNHAIIFTRGEGLQTIDMNQD------NYMEESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAW 627 (1192)
Q Consensus 554 LGEGKpeNQNhAiIFtRGE~lQtIDmNQD------nYlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~ 627 (1192)
.|+|.|+ |+|.-+|-| .++.++++.+ .+..|+....|..--+-... ...+.++|
T Consensus 9 ~G~G~~~-~~H~~Lf~~--~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~--~~~~~~lG--------------- 68 (106)
T PF14518_consen 9 MGNGDPE-RSHPELFRR--FLRALGIDDEPGAYRDPYPPETLALINLFLALCLHR--SHYPEALG--------------- 68 (106)
T ss_dssp TTTT-GG-G-HHHHHHH--HHHHTT-----TT-----HHHHHHHHHHHHHH--H---SSTHHHHH---------------
T ss_pred hCCCCcc-ccHHHHHHH--HHHHcCCCCccccccccCCHHHHHHHHHHHHhcccc--hhHHHHHH---------------
Confidence 5899987 599999987 8888888876 67789999888776664321 11233322
Q ss_pred hcccchhhHHHHHHHhhccccc
Q 001004 628 FMSNQETSFVTIGQRLLAHPLK 649 (1192)
Q Consensus 628 f~a~qE~sFvTl~qR~LA~Pl~ 649 (1192)
++.+-|.+.-...+++..- ++
T Consensus 69 ~~~~~E~~~~~~~~~~~~~-l~ 89 (106)
T PF14518_consen 69 ALLATESSVPQIYRRLIKG-LR 89 (106)
T ss_dssp HHHHHHTHHHHHHHHHHHH-HH
T ss_pred HHHHHhhcChHHHHHHHHH-HH
Confidence 3448888888887766553 55
No 19
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=24.37 E-value=28 Score=27.95 Aligned_cols=11 Identities=55% Similarity=0.724 Sum_probs=8.2
Q ss_pred cCCCccccchh
Q 001004 724 ANGNGEQTLSR 734 (1192)
Q Consensus 724 a~GnGEQ~LSR 734 (1192)
-.|+|||++|+
T Consensus 9 P~GCgEQtm~~ 19 (31)
T PF10569_consen 9 PYGCGEQTMSS 19 (31)
T ss_dssp --SSTTHHHHH
T ss_pred CCCcHHHHHHH
Confidence 46999999987
No 20
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.32 E-value=5.6e+02 Score=30.19 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH--Hhhhccccc
Q 001004 1131 RGYEIVMGLLLFTPVA--FLAWFPFVS 1155 (1192)
Q Consensus 1131 r~yD~~~G~~lf~Pia--~LSw~Pfvs 1155 (1192)
+..-+...+++.+|++ +|+.++..-
T Consensus 195 ~~~~l~~~~li~~Pl~li~la~~GY~y 221 (340)
T PF12794_consen 195 RLRYLWWPLLILAPLALIVLALLGYYY 221 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455566666666654 345555543
No 21
>PLN02436 cellulose synthase A
Probab=23.87 E-value=6.2e+02 Score=34.63 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=112.4
Q ss_pred cchhhhccccccccCcceeee-eee--eeccccccCccccccchhhccCCCccccchhhHHh---hccccchhhhhhhhh
Q 001004 680 LSEDIFAGFNSTLREGNVTHH-EYI--QVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYR---LGHRFDFFRMLSCYV 753 (1192)
Q Consensus 680 LsEDIFaG~N~~lRgG~I~h~-EYi--QcGKGRDvG~~qI~~FeaKIa~GnGEQ~LSRdvyr---LG~~ldffRmLSfYy 753 (1192)
++||++.|+---.||=+--+| +=. -.|---+ ++.+-..=-..=|.|+=|-.+||+-=- .+.+|.|-.-|++.
T Consensus 792 vTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~-~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl- 869 (1094)
T PLN02436 792 VTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPI-NLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYI- 869 (1094)
T ss_pred eecHHHHHHHHHcCCCceEeCCCCchhhcCcCCC-CHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHH-
Confidence 689999999999999998886 311 1232111 112222223456889989999997322 35678887766544
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCchhhhhccchhhHHHHHHhhhhHHHHHHHHHHH---
Q 001004 754 TTIGFYFSTLLTVLTVYVFLYGRLYLILSGLEKGLSTQPAIRDNKPLQVALASQSFVQIGFLMALPMMMEIGLERGF--- 830 (1192)
Q Consensus 754 t~~GFy~n~~~~vltV~~fly~~lylalsg~e~~~~~~~~~~~~~~l~~~l~~q~i~qlg~l~~lPm~~~~~lE~G~--- 830 (1192)
.+.=|+++++.. .+|+++ =++.-+.|.- +. +. + +...+.+++..+++..+...+|--.
T Consensus 870 ~~~ly~l~Slp~--liY~~l--P~l~LL~G~~--i~--P~----------v-s~~~~~~fi~lfls~~~~~lLE~~wsG~ 930 (1094)
T PLN02436 870 NSVVYPWTSIPL--IVYCTL--PAICLLTGKF--IV--PE----------I-SNYASILFMALFISIAATGILEMQWGGV 930 (1094)
T ss_pred HHHHHHHHHHHH--HHHHHH--HHHHHHcCCe--ec--Cc----------c-chHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444466666554 233222 2222233421 11 10 0 1123345666777888777777421
Q ss_pred -HHHHHHHHHHH--hhhcc-eeeeEEeeeeEeEeecccccccceeeccCCceEEee-----cchhhhhhhhhhhhHHHHH
Q 001004 831 -RNALSDFILMQ--LQLAA-VFFTFSLGTKTHYYGRTLLHGGAEYRGTGRGFVVFH-----AKFAENYRLYSRSHFVKGI 901 (1192)
Q Consensus 831 -~~A~~~~~~~~--l~la~-vF~~F~~gt~~h~~~~~il~GGAkY~aTGRGFvv~h-----~~F~~~Y~~YarSHf~~g~ 901 (1192)
+++.++==.+. -..++ +|-+|+.=.| +.|| ..-+|.|+. ..|+++|..=..+-|....
T Consensus 931 si~~WWrnQq~w~I~~tSa~Lfavl~~iLK--------vLgg-----s~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~t 997 (1094)
T PLN02436 931 GIDDWWRNEQFWVIGGVSSHLFALFQGLLK--------VLAG-----VNTNFTVTSKAADDGEFSELYLFKWTSLLIPPT 997 (1094)
T ss_pred cHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--------Hhcc-----CcccceecccccccccccceeeecceeHhHHHH
Confidence 22222211111 11111 1111110000 1111 223455554 3477777544667788888
Q ss_pred HHHHHHHHHHHhcccc-------cchhhhhHHHHHHHHHHHHH
Q 001004 902 ELMILLLVYHILGNSY-------RGVVAFLLITVSIWFMVGTW 937 (1192)
Q Consensus 902 el~~lLivy~~yg~~~-------~~~~~y~~~t~s~W~~~~sw 937 (1192)
-++++-++=.+.|... ....+++-+-++.|.++..|
T Consensus 998 ti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~ly 1040 (1094)
T PLN02436 998 TLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLY 1040 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 8887765444443321 11122345666777776655
No 22
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=23.33 E-value=8e+02 Score=31.99 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhchhhccc
Q 001004 1128 TLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSR 1169 (1192)
Q Consensus 1128 ~LAr~yD~~~G~~lf~Pia~LSw~Pfvs~~QTRlLFN~aFSr 1169 (1192)
.+.|+.|.++|.++-.-...+ -+|--..-+-+-...+++..
T Consensus 502 a~~Rl~DTliG~~iA~~~~~l-lwP~w~~~~l~~~~~~al~a 542 (701)
T TIGR01667 502 ILPRLIDTLIGCLIAWGAVSY-LWPDWQSRLLRKMLHDALEA 542 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHH
Confidence 556999999998765443333 34654444444444444444
No 23
>PRK11281 hypothetical protein; Provisional
Probab=22.71 E-value=2.5e+02 Score=38.39 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=8.0
Q ss_pred cchhhhHHHhhhh
Q 001004 995 KRGIIVEILLSLR 1007 (1192)
Q Consensus 995 ~~gk~~eiil~lR 1007 (1192)
+..-++-+++++.
T Consensus 543 ~~al~~t~l~alp 555 (1113)
T PRK11281 543 PKAILITLLLALP 555 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 3556666666665
No 24
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=22.28 E-value=53 Score=33.90 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=65.7
Q ss_pred CCCCcCccchhhhhcccccccccCCccchH-HHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchhhhhhcccchh
Q 001004 556 GGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAWFMSNQET 634 (1192)
Q Consensus 556 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~f~a~qE~ 634 (1192)
.||..|.|+++-..+||++=.+|.. ..+ ..+|+ .+++.+.. + .+.++|-+
T Consensus 72 ~~~~~~~n~g~~~a~~d~i~~~D~D--~~~~~~~l~--~l~~~~~~-~----~~~~v~~~-------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEEARYDILVISDSD--ISVPPDYLR--RMVAPLMD-P----GVGLVTCL-------------------- 122 (196)
T ss_pred CHhHHHHHHHHHhCCCCEEEEECCC--ceEChhHHH--HHHHHhhC-C----CCCeEEee--------------------
Confidence 3678889999999999999998874 333 33332 45555531 1 34455533
Q ss_pred hHHHHHHHhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeeeeee
Q 001004 635 SFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQV 705 (1192)
Q Consensus 635 sFvTl~qR~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EYiQc 705 (1192)
+..|+==.+.|-.+-.-||-+. -...+.||..-++....+|.+|.+++...+
T Consensus 123 -----------------~~~g~~~~~r~~~~~~~ggf~~--~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~ 174 (196)
T cd02520 123 -----------------CAFGKSMALRREVLDAIGGFEA--FADYLAEDYFLGKLIWRLGYRVVLSPYVVM 174 (196)
T ss_pred -----------------cccCceeeeEHHHHHhccChHH--HhHHHHHHHHHHHHHHHcCCeEEEcchhee
Confidence 2233333455555555567632 123468999999999999999999877544
No 25
>PRK10547 chemotaxis protein CheA; Provisional
Probab=21.40 E-value=4.2e+02 Score=34.32 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHH
Q 001004 128 YMHRAVQECYASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRV 207 (1192)
Q Consensus 128 y~~~Av~e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~v 207 (1192)
|+.+| .|..+.+...|..|=....+...|+.||+.+...--... .+.+..+-.+.-++.+++..+.++.-.-...+
T Consensus 10 F~~Ea-~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~---~~g~~~i~~l~H~~E~lld~vR~g~l~~~~~~ 85 (670)
T PRK10547 10 FFDEA-DELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAG---TFGFTVLQETTHLMENLLDEARRGEMQLNTDI 85 (670)
T ss_pred HHHHH-HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHh---hcCchHHHHHHHHHHHHHHHHHCCCCCCCHHH
Confidence 34333 455555566676666666788899999999876654444 45688888999999999999998764444556
Q ss_pred HHHHHHHHHHH
Q 001004 208 VIVLLNMLEVV 218 (1192)
Q Consensus 208 v~~l~~l~e~v 218 (1192)
++.+.+-.+.+
T Consensus 86 ~dlll~~~D~l 96 (670)
T PRK10547 86 INLFLETKDIM 96 (670)
T ss_pred HHHHHHHHHHH
Confidence 66665555544
No 26
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=21.07 E-value=89 Score=38.73 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=23.8
Q ss_pred ccchhhhccccccccCcceeeeeeee
Q 001004 679 NLSEDIFAGFNSTLREGNVTHHEYIQ 704 (1192)
Q Consensus 679 nLsEDIFaG~N~~lRgG~I~h~EYiQ 704 (1192)
+|.||+--|+....+|.++.++.+--
T Consensus 260 sLTED~dLglRL~~~G~rv~y~p~ai 285 (504)
T PRK14716 260 SLTEDYDIGLRLKRAGFRQIFVRVRA 285 (504)
T ss_pred CcchHHHHHHHHHHCCCEEEEecccc
Confidence 89999999999999999999987763
No 27
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=20.26 E-value=1.1e+02 Score=31.21 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=71.3
Q ss_pred eecCCCcccCCCCCcCccchhhhhcccccccccCCccchH-HHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchh
Q 001004 546 IKLPGPAILGGGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSS 624 (1192)
Q Consensus 546 IkLPG~piLGEGKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvss 624 (1192)
|+.|.| -|++.+-|+|+-.+.||++-.+|. |.++ .++++ .+++.+++.. +..++|-+-..+.++...
T Consensus 60 i~~~~n----~G~~~a~N~g~~~a~gd~i~~lD~--Dd~~~~~~l~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 127 (201)
T cd04195 60 VPLEKN----RGLGKALNEGLKHCTYDWVARMDT--DDISLPDRFE--KQLDFIEKNP----EIDIVGGGVLEFDSDGND 127 (201)
T ss_pred EEcCcc----ccHHHHHHHHHHhcCCCEEEEeCC--ccccCcHHHH--HHHHHHHhCC----CeEEEcccEEEECCCCCe
Confidence 555655 488999999999999999988874 3333 33333 5555665432 345555544333333221
Q ss_pred hhhhc-ccchhhHHHHHHHhhccccceeeecCCCc-ccccccccccCCccccccccccchhhhccccccccCcceeee
Q 001004 625 LAWFM-SNQETSFVTIGQRLLAHPLKVRFHYGHPD-VFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHH 700 (1192)
Q Consensus 625 La~f~-a~qE~sFvTl~qR~LA~Pl~vR~HYGHPD-vfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~ 700 (1192)
..... ......+....++ ..-+.||= ++.|.-...-||.... ...||..-.......|+++.|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~rr~~~~~~g~~~~~----~~~eD~~~~~r~~~~g~~~~~~ 193 (201)
T cd04195 128 IGKRRLPTSHDDILKFARR--------RSPFNHPTVMFRKSKVLAVGGYQDL----PLVEDYALWARMLANGARFANL 193 (201)
T ss_pred eccccCCCCHHHHHHHhcc--------CCCCCChHHhhhHHHHHHcCCcCCC----CCchHHHHHHHHHHcCCceecc
Confidence 11000 0000001111111 11123332 3444445555776533 6789999999998889888774
No 28
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=20.24 E-value=1.1e+02 Score=31.83 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=20.9
Q ss_pred hhhhhhheeeeeeeccc-----cCCc----ceeehhhHHHHHHHHH
Q 001004 1006 LRFFMYQYGLVYHLSFT-----KSTQ----NFLVYGASWVVIIFVL 1042 (1192)
Q Consensus 1006 lRffi~qygivy~L~i~-----~~~k----si~Vy~lsW~vi~~~~ 1042 (1192)
.-||+++||++..-++- ++.. -+....+.|+++++++
T Consensus 33 ~~yf~~~Ygv~id~~mi~nv~eTn~~Ea~ells~~~~~~~l~~~vl 78 (156)
T PF08019_consen 33 ASYFMDTYGVVIDYDMIQNVFETNTAEASELLSWKLILWLLLLGVL 78 (156)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHHHH
Confidence 45889999988655431 1111 1334445666666665
Done!