Query 001004
Match_columns 1192
No_of_seqs 205 out of 295
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 69.5 1.8 6.1E-05 53.3 2.3 133 556-702 224-362 (802)
2 3kyj_A CHEA3, putative histidi 32.6 1.6E+02 0.0054 29.2 8.8 86 128-217 16-101 (144)
3 2ysr_A DEP domain-containing p 30.4 13 0.00045 35.3 0.6 30 52-81 9-38 (105)
4 1ich_A TNF-1, tumor necrosis f 28.4 64 0.0022 31.4 5.0 75 346-421 11-101 (112)
5 2lch_A Protein OR38; structura 27.4 2E+02 0.007 26.6 8.2 82 134-218 16-97 (113)
6 1i5n_A Chemotaxis protein CHEA 21.7 3.2E+02 0.011 26.8 8.7 89 127-218 7-98 (146)
7 2lp4_A Chemotaxis protein CHEA 19.4 3.3E+02 0.011 28.4 8.7 89 127-218 7-98 (225)
8 1tqg_A Chemotaxis protein CHEA 18.0 4.5E+02 0.015 23.7 8.4 82 134-218 15-96 (105)
9 2ld6_A Chemotaxis protein CHEA 15.3 2.8E+02 0.0097 26.8 6.6 81 135-218 15-95 (139)
10 4hkr_A Calcium release-activat 14.8 1.4E+02 0.0049 31.9 4.5 37 1123-1159 108-145 (214)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=69.45 E-value=1.8 Score=53.31 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=82.7
Q ss_pred CCCCcCccchhhhhcccccccccCCccchH-HHHHhhhhhHHHHhhcCCCCCCceEeeccceeeccc-----chhhhhhc
Q 001004 556 GGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGS-----VSSLAWFM 629 (1192)
Q Consensus 556 EGKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgs-----vssLa~f~ 629 (1192)
.||+.|-|+++=-++||++-++|.+- .+ .++++ .+++.|+++. .+.+++.+-++..++ .+......
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L~--~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~~ 295 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFLA--RTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRCP 295 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHHH--HHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTSC
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCC--CcChHHHH--HHHHHHhcCC----CeEEEeccEEEeCCchHhhhhhHHhhhh
Confidence 37999999999999999999999753 22 33332 5556775443 355666555544433 22222222
Q ss_pred ccchhhHHHHHHHhhccccceeeecCCCcccccccccccCCccccccccccchhhhccccccccCcceeeeee
Q 001004 630 SNQETSFVTIGQRLLAHPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEY 702 (1192)
Q Consensus 630 a~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~iF~~TRGGiSKAsk~inLsEDIFaG~N~~lRgG~I~h~EY 702 (1192)
..+..|-...++.... ...-.--|+-=++.|.....-||... -.++||..-++-...+|.++.++.-
T Consensus 296 -~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~~ 362 (802)
T 4hg6_A 296 -PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYIDR 362 (802)
T ss_dssp -CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECCC
T ss_pred -HHHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEecC
Confidence 2233444445554432 23333346655666666666688774 3568999999999889988877653
No 2
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=32.56 E-value=1.6e+02 Score=29.19 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHH
Q 001004 128 YMHRAVQECYASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRV 207 (1192)
Q Consensus 128 y~~~Av~e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~v 207 (1192)
|+..| .|..+.+...|..|-.+..+...|+.||+.+...-=... .+.+..+-.+.-++.++++.+.+........+
T Consensus 16 FleEa-~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~---~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l 91 (144)
T 3kyj_A 16 YADDG-AQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSR---VLGLSVVESRAHLCEDLIGLVRDAGVPMDGEI 91 (144)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHH---hcCchHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 44333 555556666666666666777889999998876544433 35667788888999999999988654333445
Q ss_pred HHHHHHHHHH
Q 001004 208 VIVLLNMLEV 217 (1192)
Q Consensus 208 v~~l~~l~e~ 217 (1192)
+..|..-++.
T Consensus 92 ~dlll~~~D~ 101 (144)
T 3kyj_A 92 VEILLFASDT 101 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 3
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.39 E-value=13 Score=35.30 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=26.2
Q ss_pred HHHHhHHHHHhccccccccccccccccccc
Q 001004 52 KFAQMWNKIISSFREEDLISNREMDLLLVP 81 (1192)
Q Consensus 52 rFa~~WNeii~sfReeDlisdrE~~lL~~p 81 (1192)
|-..+||+||..||....|-||...+=.+|
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred hHHHHHHHHHHHHHcCCCcceeeeCCEECC
Confidence 334699999999999999999998887777
No 4
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=28.42 E-value=64 Score=31.37 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=49.5
Q ss_pred CcccHHHHHHhhCc-hhhhhHHHHhcCCchhhhhh---------chHHHHHHhhhhhccc------ccccccccccccHH
Q 001004 346 DGVSILFYLQKIFP-DEWMNFLERVNCSSEEELRA---------SEELEEELRLWASYRG------QTLTKTVRGMMYYR 409 (1192)
Q Consensus 346 dgvsiL~YL~~i~P-dEW~NFler~~~~~~~~~~~---------~~~~~~elRlWAS~Rg------QTL~RTVrGmM~Y~ 409 (1192)
+.-.+|+.+-...| .+|+.|+.++|+.. .++.. .+....=||.|----| +||..+.+-|=.-.
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse-~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~ 89 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSD-HEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLG 89 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCH-HHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCH-HHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHH
Confidence 34566777777777 89999999999654 33221 1223345999998766 77777777776666
Q ss_pred HHHHHhhhhccc
Q 001004 410 KALELQAFLDMA 421 (1192)
Q Consensus 410 ~ALkll~~lE~~ 421 (1192)
-|-+++..++.+
T Consensus 90 ~ae~Ie~~l~~~ 101 (112)
T 1ich_A 90 CLEDIEEALCGP 101 (112)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 677777666644
No 5
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=27.41 E-value=2e+02 Score=26.59 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHHHHHHHH
Q 001004 134 QECYASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRVVIVLLN 213 (1192)
Q Consensus 134 ~e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~vv~~l~~ 213 (1192)
.|..+.+...|..+-.+..+...++.+|+.+...-=.. ..+.+..+..+...+.++++.+.+++......++..+..
T Consensus 16 ~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa---~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~ 92 (113)
T 2lch_A 16 KELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEIT---ETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKK 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHH---HhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 44455555555555445556667888888765543222 246677888899999999999988765445556666666
Q ss_pred HHHHH
Q 001004 214 MLEVV 218 (1192)
Q Consensus 214 l~e~v 218 (1192)
-++.+
T Consensus 93 ~~d~l 97 (113)
T 2lch_A 93 KLDMV 97 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 6
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=21.74 E-value=3.2e+02 Score=26.76 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcch
Q 001004 127 NYMHRAVQECYASFKI---IINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKED 203 (1192)
Q Consensus 127 ~y~~~Av~e~y~s~k~---il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~ 203 (1192)
+++..=+.|+-+.+.. .|..+-.+..+...++.+|+.+-..--.. ..+.+..|..+...+.++++.+.+++.+.
T Consensus 7 ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA---~~~G~~~l~~lah~lE~~l~~~r~g~~~~ 83 (146)
T 1i5n_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGA---GTFGFTILQETTHLMENLLDEARRGEMQL 83 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhH---HccCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3444444555554444 44444444445666888888765543332 24567788888999999999998876544
Q ss_pred hHHHHHHHHHHHHHH
Q 001004 204 KDRVVIVLLNMLEVV 218 (1192)
Q Consensus 204 ~~~vv~~l~~l~e~v 218 (1192)
...+++.|..-++.+
T Consensus 84 ~~~l~~~l~~~~D~l 98 (146)
T 1i5n_A 84 NTDIINLFLETKDIM 98 (146)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 455566665555554
No 7
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=19.38 E-value=3.3e+02 Score=28.42 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcch
Q 001004 127 NYMHRAVQECYASFKI---IINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKED 203 (1192)
Q Consensus 127 ~y~~~Av~e~y~s~k~---il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~ 203 (1192)
+|+..=+.||-+.+.. .|..|-.+..+...++.||+.+...--... .|.+..+-.+.-.+..+++.+.++.-..
T Consensus 7 ~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~---~~g~~~i~~laH~~E~~l~~~r~g~~~~ 83 (225)
T 2lp4_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAG---TFGFTILQETTHLMENLLDEARRGEMQL 83 (225)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHH---hcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4444445566655544 444555566677889999998766544433 4677888899999999999998876443
Q ss_pred hHHHHHHHHHHHHHH
Q 001004 204 KDRVVIVLLNMLEVV 218 (1192)
Q Consensus 204 ~~~vv~~l~~l~e~v 218 (1192)
...+++.|..-.+.+
T Consensus 84 ~~~~~~ll~~~~D~l 98 (225)
T 2lp4_A 84 NTDIINLFLETKDIM 98 (225)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 444555555544443
No 8
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=18.03 E-value=4.5e+02 Score=23.73 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHHHHHHHH
Q 001004 134 QECYASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRVVIVLLN 213 (1192)
Q Consensus 134 ~e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~vv~~l~~ 213 (1192)
.|..+.+...+..+-.+..+...++.+|+.+...--.. ..+.+..|..+...+.++++.+.+++.......+..+..
T Consensus 15 ~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa---~~~G~~~l~~la~~lE~~l~~~r~~~~~~~~~~~~~l~~ 91 (105)
T 1tqg_A 15 KEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMA---GTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFA 91 (105)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHH---HhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34444445545444444445555666766655432222 245667788888888889888888665445555666655
Q ss_pred HHHHH
Q 001004 214 MLEVV 218 (1192)
Q Consensus 214 l~e~v 218 (1192)
-++.+
T Consensus 92 ~~d~l 96 (105)
T 1tqg_A 92 GVDMI 96 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 9
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=15.28 E-value=2.8e+02 Score=26.84 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHHHHHHHHH
Q 001004 135 ECYASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRVVIVLLNM 214 (1192)
Q Consensus 135 e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~vv~~l~~l 214 (1192)
|..+.+...|..+-.+..+...++.+|+.+-..--.. ..+.+..+..+...+.++++.+.+++......+++.+.+-
T Consensus 15 e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA---~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~~l~~~l~~~ 91 (139)
T 2ld6_A 15 EYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMA---GTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 91 (139)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHH---HhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3334444444444444445556777777765443222 2456677888888999999888876543333444444444
Q ss_pred HHHH
Q 001004 215 LEVV 218 (1192)
Q Consensus 215 ~e~v 218 (1192)
++.+
T Consensus 92 ~D~l 95 (139)
T 2ld6_A 92 VDMI 95 (139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 10
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=14.83 E-value=1.4e+02 Score=31.91 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccchhhh
Q 001004 1123 WESIKTLARGYEIVMGLLLF-TPVAFLAWFPFVSEFQT 1159 (1192)
Q Consensus 1123 W~~V~~LAr~yD~~~G~~lf-~Pia~LSw~Pfvs~~QT 1159 (1192)
+...-++|+.+--+.|+++| +-|++++|+-|...-|+
T Consensus 108 ~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~ 145 (214)
T 4hkr_A 108 LHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRR 145 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcH
Confidence 67788999999999999998 56889999998877554
Done!