Query 001004
Match_columns 1192
No_of_seqs 205 out of 295
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 05:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001004.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001004hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5na_ a.24.10.3 (A:) Chemota 33.0 72 0.0052 27.9 8.5 78 137-217 17-94 (128)
2 d1tqga_ a.24.10.3 (A:) Chemota 29.7 81 0.0059 26.7 8.0 64 134-200 15-78 (105)
3 d1xhba2 c.68.1.17 (A:95-422) P 16.6 24 0.0017 35.0 1.8 33 557-589 94-129 (328)
4 d1sq5a_ c.37.1.6 (A:) Pantothe 10.8 1.3E+02 0.0093 30.8 5.5 50 584-646 57-106 (308)
5 d1wlna1 b.26.1.2 (A:8-114) Afa 9.8 54 0.0039 28.6 1.8 22 562-583 52-73 (107)
6 d2yrka1 g.37.1.4 (A:8-55) Zinc 9.8 18 0.0013 28.7 -1.3 12 608-619 17-28 (48)
7 d1n0ua4 d.58.11.1 (A:482-560) 9.5 71 0.0052 26.6 2.4 33 462-494 7-39 (79)
8 d1omza_ c.68.1.15 (A:) Alpha-1 8.1 46 0.0033 29.6 0.6 15 318-332 1-15 (265)
9 d1r0va1 c.52.2.1 (A:62-139) Di 7.7 1.6E+02 0.012 24.1 3.7 35 475-520 39-73 (78)
10 d1x4la1 g.39.1.3 (A:8-36) Four 7.5 48 0.0035 23.7 0.3 8 866-873 11-18 (29)
No 1
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=33.01 E-value=72 Score=27.88 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCCcchhHHHHHHHHHHHH
Q 001004 137 YASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANKKEDKDRVVIVLLNMLE 216 (1192)
Q Consensus 137 y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~~~~~~~vv~~l~~l~e 216 (1192)
.+.+...|..+-.+..+...++.+|+.+...--.... +.+..+-.+..++.++++.+.++.......++..+..-.+
T Consensus 17 l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~---~gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~l~~~~d 93 (128)
T d1i5na_ 17 LADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGT---FGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKD 93 (128)
T ss_dssp HHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhh---cChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3444555555555656677889999887665444433 4677888899999999999988654333334444444433
Q ss_pred H
Q 001004 217 V 217 (1192)
Q Consensus 217 ~ 217 (1192)
.
T Consensus 94 ~ 94 (128)
T d1i5na_ 94 I 94 (128)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.70 E-value=81 Score=26.69 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHhcccccceecCCCchhHHHHHHHHHHHHhhCC
Q 001004 134 QECYASFKIIINVLVLGEREKEVINEIFSKVDEHIREDNLLTELNMSALPSLYEQCVELIECLLANK 200 (1192)
Q Consensus 134 ~e~y~s~k~il~~ll~~~~~~~ii~~i~~~i~~~i~~~~~~~~f~~~~Lp~l~~~~~~L~~~L~~~~ 200 (1192)
.|.-+.+...|..+-.+..+...++.+|+.+...--... .+.+..+-.+..++.++++.+.+..
T Consensus 15 ~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~---~~gl~~i~~lah~lE~~l~~~~~~~ 78 (105)
T d1tqga_ 15 KEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAG---TMGFSSMAKLCHTLENILDKARNSE 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchh---hcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 444455566666665566667778888888766544443 3467778888999999999998865
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.60 E-value=24 Score=34.97 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCCcCccchhhhhcccccccccCC---ccchHHHHH
Q 001004 557 GKPENQNHAIIFTRGEGLQTIDMN---QDNYMEESL 589 (1192)
Q Consensus 557 GKpeNQNhAiIFtRGE~lQtIDmN---QDnYlEEaL 589 (1192)
|.+...|.|+--++||+|=.+|.. ..++||+.+
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHH
Confidence 677778888888889988888765 556666554
No 4
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=10.81 E-value=1.3e+02 Score=30.84 Aligned_cols=50 Identities=30% Similarity=0.580 Sum_probs=36.7
Q ss_pred hHHHHHhhhhhHHHHhhcCCCCCCceEeeccceeecccchhhhhhcccchhhHHHHHHHhhcc
Q 001004 584 YMEESLKMRNLLQEFLKKHDGVRYPTILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRLLAH 646 (1192)
Q Consensus 584 YlEEaLKmRNlL~EF~~~~~g~~~~tIlG~REhIFTgsvssLa~f~a~qE~sFvTl~qR~LA~ 646 (1192)
|.+++.+.....++|.... +.+.|-||| .+|++|| | -+||....|..|+.
T Consensus 57 ~~~~~~~~~~~~~~fl~~~-~~k~P~iIG-----IaG~sgS------G-KSTla~~L~~lL~~ 106 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTN-GQRIPYIIS-----IAGSVAV------G-KSTTARVLQALLSR 106 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCEEEE-----EEECTTS------S-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccc-CCCCCEEEE-----EeCCCCC------C-CcHHHHHHHHHHhh
Confidence 4588888888999998655 566788999 6777765 3 46777777777763
No 5
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.83 E-value=54 Score=28.57 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=19.1
Q ss_pred ccchhhhhcccccccccCCccc
Q 001004 562 QNHAIIFTRGEGLQTIDMNQDN 583 (1192)
Q Consensus 562 QNhAiIFtRGE~lQtIDmNQDn 583 (1192)
..||.|-..++.+.+.|.+..|
T Consensus 52 ~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 52 PHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SSCEEEEESSSCEEEEESCSSS
T ss_pred eeEEEEEEcccccEEecCCCCc
Confidence 4699999999999999998876
No 6
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.82 E-value=18 Score=28.67 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=8.7
Q ss_pred ceEeeccceeec
Q 001004 608 PTILGVREHIFT 619 (1192)
Q Consensus 608 ~tIlG~REhIFT 619 (1192)
-+=+-+|+||||
T Consensus 17 s~~~SvrdHiFs 28 (48)
T d2yrka1 17 SARLSIRDHIFS 28 (48)
T ss_dssp CSSSCHHHHHTS
T ss_pred eeecchHhhhhh
Confidence 344567899998
No 7
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.49 E-value=71 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=26.6
Q ss_pred EEEeeeccCCCCCCccchHHHHHHHHhCCCcEE
Q 001004 462 VVSCQQYGTHKRSGDARAKDILRLMTTYPSLRV 494 (1192)
Q Consensus 462 VVscQ~Yg~~k~~~~~~a~di~~Lm~~~P~LrV 494 (1192)
|+++-++.+.+...+.-.+.+..|.+..|+++|
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v 39 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT 39 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 678888887666655556888999999999987
No 8
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.11 E-value=46 Score=29.57 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=0.0
Q ss_pred ccccceeecccccce
Q 001004 318 NMLSFSVLTPYYSED 332 (1192)
Q Consensus 318 ~M~sfSVLtPyY~E~ 332 (1192)
.|=||||++|-|+|.
T Consensus 1 ~~~~~tvii~tyn~~ 15 (265)
T d1omza_ 1 ALDSFTLIMQTYNRT 15 (265)
T ss_dssp CTTCEEEEEEESSCH
T ss_pred CCCcEEEEEEcCCCH
No 9
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.67 E-value=1.6e+02 Score=24.11 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=27.5
Q ss_pred CccchHHHHHHHHhCCCcEEEEeeecccccccccccccceEEEEEE
Q 001004 475 GDARAKDILRLMTTYPSLRVAYIDEVEETSKDKTKKTVQKVYYSAL 520 (1192)
Q Consensus 475 ~~~~a~di~~Lm~~~P~LrVAYiDe~~~~~~~~~~~~~~~~yySvL 520 (1192)
+.-+.++|..-.+.|..||.|-+||.. +.+|+.|-
T Consensus 39 ktirmeeiaekarnfdelrlavvdees-----------eityfrvy 73 (78)
T d1r0va1 39 KTIRMEEIAEKARNFDELRLAVVDEES-----------EITYFRVY 73 (78)
T ss_dssp SCBCHHHHHHHTTTCSSCEEEEECTTC-----------CEEEEEEE
T ss_pred ceeeHHHHHHHhcCchheeeeeecccc-----------eEEEEEEe
Confidence 345678899999999999999999843 46787663
No 10
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.54 E-value=48 Score=23.67 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=6.7
Q ss_pred cccceeec
Q 001004 866 HGGAEYRG 873 (1192)
Q Consensus 866 ~GGAkY~a 873 (1192)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 68999986
Done!