Query 001005
Match_columns 1192
No_of_seqs 159 out of 187
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 13:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196 Tyrosine kinase, EPH ( 96.3 0.0035 7.6E-08 77.7 4.5 54 541-607 261-318 (996)
2 PF07699 GCC2_GCC3: GCC2 and G 96.2 0.0022 4.8E-08 53.9 1.7 26 550-577 9-34 (48)
3 KOG0921 Dosage compensation co 95.0 0.049 1.1E-06 68.7 7.2 12 153-164 938-949 (1282)
4 PF10256 Erf4: Golgin subfamil 92.8 0.33 7.2E-06 47.6 7.1 67 714-780 21-91 (118)
5 cd00185 TNFR Tumor necrosis fa 92.7 0.16 3.5E-06 48.6 4.7 65 538-609 12-87 (98)
6 PF07562 NCD3G: Nine Cysteines 92.7 0.026 5.6E-07 49.0 -0.6 36 540-577 6-51 (54)
7 PHA02637 TNF-alpha-receptor-li 91.9 0.14 3.1E-06 51.9 3.4 57 542-603 31-92 (127)
8 PHA02637 TNF-alpha-receptor-li 88.1 0.35 7.6E-06 49.3 2.6 41 534-575 38-87 (127)
9 KOG0921 Dosage compensation co 85.0 1.7 3.6E-05 55.9 6.5 27 82-108 838-864 (1282)
10 PF07699 GCC2_GCC3: GCC2 and G 80.7 1.3 2.8E-05 37.5 2.4 30 538-567 9-43 (48)
11 KOG3973 Uncharacterized conser 68.9 16 0.00035 43.0 7.9 16 168-184 225-240 (465)
12 cd00185 TNFR Tumor necrosis fa 65.5 6.6 0.00014 37.7 3.5 31 549-579 11-43 (98)
13 PF15496 DUF4646: Domain of un 61.8 7.7 0.00017 39.3 3.3 22 865-886 46-67 (123)
14 KOG4289 Cadherin EGF LAG seven 58.3 7.2 0.00016 52.3 2.9 86 1031-1128 2169-2256(2531)
15 KOG4069 Uncharacterized conser 54.3 40 0.00088 35.1 6.8 70 713-786 45-125 (154)
16 smart00180 EGF_Lam Laminin-typ 54.1 7.6 0.00016 32.8 1.5 24 535-561 17-40 (46)
17 PF05268 GP38: Phage tail fibr 53.9 25 0.00055 39.3 5.7 27 399-427 125-151 (260)
18 cd00055 EGF_Lam Laminin-type e 53.3 7.8 0.00017 33.1 1.5 27 534-563 17-43 (50)
19 KOG3973 Uncharacterized conser 52.2 52 0.0011 39.1 8.1 8 94-101 152-159 (465)
20 PTZ00146 fibrillarin; Provisio 51.3 34 0.00073 39.7 6.5 10 423-432 64-73 (293)
21 PF10256 Erf4: Golgin subfamil 50.8 23 0.00051 34.9 4.5 65 862-930 26-115 (118)
22 PF07354 Sp38: Zona-pellucida- 45.3 13 0.00029 42.3 2.1 36 538-576 217-261 (271)
23 PF00053 Laminin_EGF: Laminin 39.2 13 0.00028 31.4 0.6 21 543-563 22-42 (49)
24 KOG1836 Extracellular matrix g 39.0 24 0.00052 49.1 3.3 34 541-575 697-732 (1705)
25 PF12273 RCR: Chitin synthesis 37.8 30 0.00064 35.0 3.1 20 626-645 2-22 (130)
26 KOG1836 Extracellular matrix g 36.7 24 0.00052 49.1 2.9 43 535-577 794-838 (1705)
27 PF11145 DUF2921: Protein of u 33.3 1.1E+02 0.0023 40.8 7.6 116 1004-1119 593-723 (909)
28 cd00064 FU Furin-like repeats. 31.1 29 0.00064 29.1 1.5 22 541-562 18-42 (49)
29 KOG0994 Extracellular matrix g 30.1 51 0.0011 44.2 4.0 40 542-585 785-824 (1758)
30 KOG4260 Uncharacterized conser 28.8 36 0.00078 39.3 2.2 21 542-562 131-151 (350)
31 PF05268 GP38: Phage tail fibr 28.8 91 0.002 35.2 5.1 14 468-481 143-156 (260)
32 PTZ00382 Variant-specific surf 27.4 44 0.00095 32.8 2.2 25 550-577 4-28 (96)
33 COG4907 Predicted membrane pro 26.3 43 0.00093 41.0 2.3 8 295-302 451-458 (595)
34 COG1512 Beta-propeller domains 25.0 71 0.0015 36.8 3.7 12 356-367 257-268 (271)
35 KOG4260 Uncharacterized conser 24.4 43 0.00092 38.7 1.7 36 541-576 170-205 (350)
36 KOG4180 Predicted kinase [Gene 23.4 1.3E+02 0.0028 35.8 5.3 28 823-851 96-123 (395)
37 PF14946 DUF4501: Domain of un 23.1 2.3E+02 0.0049 30.9 6.6 29 621-649 83-112 (180)
38 KOG4289 Cadherin EGF LAG seven 22.4 84 0.0018 43.3 3.9 36 532-575 1734-1774(2531)
39 KOG3915 Transcription regulato 22.1 1.2E+02 0.0026 37.4 4.8 9 846-855 488-496 (641)
40 PF04790 Sarcoglycan_1: Sarcog 21.4 8.8E+02 0.019 28.0 11.3 59 280-340 162-222 (264)
41 PF15496 DUF4646: Domain of un 20.8 1.2E+02 0.0025 31.0 3.9 70 719-789 43-120 (123)
No 1
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=96.30 E-value=0.0035 Score=77.73 Aligned_cols=54 Identities=39% Similarity=0.883 Sum_probs=39.9
Q ss_pred cCCCCCCC----cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCccCCCCCccccCCccc
Q 001005 541 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYH 607 (1192)
Q Consensus 541 k~CP~G~y----G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~~~~~CpY~C~sdk~~ 607 (1192)
=-|.+||. |.-|+.||.||||...| ...|.+||.+...+ .. ..++|. |..++|+
T Consensus 261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~-------~e--ga~~C~--C~~gyyR 318 (996)
T KOG0196|consen 261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS-------SE--GATSCT--CENGYYR 318 (996)
T ss_pred eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC-------CC--CCCccc--ccCCccc
Confidence 46899984 77799999999999764 57899999854221 11 246775 8888775
No 2
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=96.25 E-value=0.0022 Score=53.91 Aligned_cols=26 Identities=42% Similarity=1.095 Sum_probs=22.6
Q ss_pred ccceeCCCCccccccCCCCCCcccCCCC
Q 001005 550 IFCEECPVGTYKNVTGSDKSLCHQCPPQ 577 (1192)
Q Consensus 550 ~fC~eCP~GtYK~~tGs~~~~C~pCp~~ 577 (1192)
.-|++||.||||+..|. ..|.+||..
T Consensus 9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g 34 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQ--TSCTPCPPG 34 (48)
T ss_pred CccCCCCCCccCCccCC--ccCccCcCC
Confidence 45999999999999876 479999975
No 3
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.97 E-value=0.049 Score=68.67 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=7.6
Q ss_pred hhhccccceeee
Q 001005 153 EELLMSDSVIKV 164 (1192)
Q Consensus 153 ~~~lm~~s~ikv 164 (1192)
|..-.++++.|+
T Consensus 938 ~r~~l~~~~~~~ 949 (1282)
T KOG0921|consen 938 ERYSLSNPVLKM 949 (1282)
T ss_pred Hhhhhcchhhhh
Confidence 445667777665
No 4
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=92.78 E-value=0.33 Score=47.65 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=45.7
Q ss_pred CCcchhhhhhchHHHHHHHHHHHhhhhhh--h--hhhHHHHHhHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 001005 714 TPPEQIKEIVYEGAFNSFVDEINAIATYH--W--WEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVR 780 (1192)
Q Consensus 714 spP~~i~~iVyed~Fn~Fad~IN~laay~--~--We~~iy~iLsvl~YPlaw~~lq~rRrkk~~rL~efv~ 780 (1192)
.-|.++...+.+++|++++++||+..+=. . |.-++-.+|.++..=+...+.....||++++|.+|+.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~ 91 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLE 91 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999987322 2 4444555555554222222234556677888999996
No 5
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=92.73 E-value=0.16 Score=48.55 Aligned_cols=65 Identities=28% Similarity=0.568 Sum_probs=42.1
Q ss_pred EEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCcc--CCCCCccccCCcc
Q 001005 538 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIA--ETPCPYRCISERY 606 (1192)
Q Consensus 538 I~gk~CP~G~y---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~~--~~~CpY~C~sdk~ 606 (1192)
.-=+.||+|++ ..-|++||.|+|...... ...|++|.. -+ ...++ ++.+.. .+.|- |.+++|
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~--C~-~g~~~-~~~ct~t~dt~C~--C~~G~y 84 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRT--CD-SGLVE-KAPCTATRNTVCG--CKPGFY 84 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCcc--CC-CCCEE-EccCCCCCCCeEe--CCCCCE
Confidence 44578999985 356999999999986532 257999975 44 22233 323322 46685 888777
Q ss_pred cCC
Q 001005 607 HMP 609 (1192)
Q Consensus 607 ~~p 609 (1192)
...
T Consensus 85 ~~~ 87 (98)
T cd00185 85 CLT 87 (98)
T ss_pred ecC
Confidence 544
No 6
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=92.68 E-value=0.026 Score=49.05 Aligned_cols=36 Identities=36% Similarity=0.812 Sum_probs=19.9
Q ss_pred ccCCCCCCCc----------ccceeCCCCccccccCCCCCCcccCCCC
Q 001005 540 GKACPKGLYG----------IFCEECPVGTYKNVTGSDKSLCHQCPPQ 577 (1192)
Q Consensus 540 gk~CP~G~yG----------~fC~eCP~GtYK~~tGs~~~~C~pCp~~ 577 (1192)
..+|++|++. +-|++||.|+|.+.+ +...|.+||.+
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~--~~~~C~~C~~~ 51 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQT--DSTSCTKCPEG 51 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE----ETTEEEE--TT
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCC--CccccccCCCc
Confidence 4689999852 239999999999987 44689999974
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=91.86 E-value=0.14 Score=51.95 Aligned_cols=57 Identities=26% Similarity=0.596 Sum_probs=37.4
Q ss_pred CCCCCCC---cccceeCCCCccccccCC--CCCCcccCCCCCCCCCceEEeeeCCccCCCCCccccC
Q 001005 542 ACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 603 (1192)
Q Consensus 542 ~CP~G~y---G~fC~eCP~GtYK~~tGs--~~~~C~pCp~~~~P~ra~yiyvr~G~~~~~CpY~C~s 603 (1192)
.|..+-| +.-|.+||.|+|.....+ ....|.|||..+.....++.. ....|.-.|++
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~~-----~C~~C~~~Cd~ 92 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHLP-----ACLSCNGRCDR 92 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCCC-----cccccCCccCc
Confidence 6888865 445999999999874433 235799999876444333321 25677777776
No 8
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=88.11 E-value=0.35 Score=49.26 Aligned_cols=41 Identities=24% Similarity=0.617 Sum_probs=31.0
Q ss_pred CCceEEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCC
Q 001005 534 ENGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCP 575 (1192)
Q Consensus 534 ~~GTI~gk~CP~G~y---------G~fC~eCP~GtYK~~tGs~~~~C~pCp 575 (1192)
..|..-=+.||||++ ..-|.+||.|||...... ...|.+|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~-~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNH-LPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCC-CCcccccC
Confidence 445667789999985 667999999999875432 34688887
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=84.97 E-value=1.7 Score=55.88 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=14.1
Q ss_pred cCccccccceeeccCCCCCcceeEEEe
Q 001005 82 NYNMSTDTETLLLEFPNQPLWTNVYVQ 108 (1192)
Q Consensus 82 n~n~~t~t~t~ll~fp~~~lw~~v~~~ 108 (1192)
+|-..|.-...|+.-|-.|+-..++|-
T Consensus 838 ~n~elt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 838 ANDELTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred ccCcccchhhhhhhccCcccccceeee
Confidence 344444444455566666665555544
No 10
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=80.70 E-value=1.3 Score=37.48 Aligned_cols=30 Identities=40% Similarity=0.912 Sum_probs=24.0
Q ss_pred EEccCCCCCCC----c-ccceeCCCCccccccCCC
Q 001005 538 TTGKACPKGLY----G-IFCEECPVGTYKNVTGSD 567 (1192)
Q Consensus 538 I~gk~CP~G~y----G-~fC~eCP~GtYK~~tGs~ 567 (1192)
-.=.+||.|+| | ..|.+||.|+|....|+.
T Consensus 9 ~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~ 43 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGST 43 (48)
T ss_pred CccCCCCCCccCCccCCccCccCcCCCccCCcCCc
Confidence 44579999987 3 459999999998877764
No 11
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=68.89 E-value=16 Score=42.99 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=8.7
Q ss_pred hhhhhhhheeecceEEE
Q 001005 168 LRMTVKIFLMWNSEMLV 184 (1192)
Q Consensus 168 l~~~~~~~lm~~s~~~i 184 (1192)
|.+||.- ..||-+|.-
T Consensus 225 L~vTVqS-F~Wsdr~k~ 240 (465)
T KOG3973|consen 225 LKVTVQS-FLWSDRLKM 240 (465)
T ss_pred HHHHHHh-hcccHHHHH
Confidence 5556655 356665543
No 12
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=65.48 E-value=6.6 Score=37.73 Aligned_cols=31 Identities=35% Similarity=1.096 Sum_probs=23.2
Q ss_pred cccceeCCCCccccccCC--CCCCcccCCCCCC
Q 001005 549 GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEF 579 (1192)
Q Consensus 549 G~fC~eCP~GtYK~~tGs--~~~~C~pCp~~~~ 579 (1192)
+.-|..||.|+|-...+. ....|.+|+..++
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~y 43 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTY 43 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCc
Confidence 555999999999876532 2357999998654
No 13
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=61.81 E-value=7.7 Score=39.29 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=18.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhh
Q 001005 865 LVPPTICYRLVAGLNAQLRLVR 886 (1192)
Q Consensus 865 ~~~~~~w~~fVa~lN~qlR~v~ 886 (1192)
.|..+.|.+|+.+|+...++-.
T Consensus 46 DVs~eDW~~F~~dl~~aa~ls~ 67 (123)
T PF15496_consen 46 DVSEEDWTRFLNDLSEAASLSP 67 (123)
T ss_pred CCCHHHHHHHHHHHHHHHhcCc
Confidence 6899999999999999844433
No 14
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=58.29 E-value=7.2 Score=52.30 Aligned_cols=86 Identities=24% Similarity=0.194 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHH-HHhccccccccccchhhhhhccCCCCcc-cccchhhhhhhh
Q 001005 1031 HQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLV-LFILPLGILLPFPAGINALFSHGPRRSV-GLARVYALWNVT 1108 (1192)
Q Consensus 1031 ~~~l~~l~is~lll~D~~ltll~llq~y~is~~~~~~v-l~~lPl~~~~p~~~Gl~alfs~~~rrs~-~~ar~yalwN~~ 1108 (1192)
-+..+|+.+..|+|+=+.++++-+|---+.+|...+++ |++ +-| +|+||.-+.. -+.-+-+|--.+
T Consensus 2169 t~a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l----------~~L--~Fv~gi~~nq~~CtvvailLhf~ 2236 (2531)
T KOG4289|consen 2169 TYAAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGL----------AQL--VFVLGINQNQFYCTVVAILLHFT 2236 (2531)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhH----------HHH--HhhhhcccCchhhHHHHHHHHHH
Confidence 34566666666776666666666665555666533322 222 222 6666665542 233444566667
Q ss_pred hhhHHHHHhhhhcccccCCC
Q 001005 1109 SLINVGVAFLCGYVHYSSGS 1128 (1192)
Q Consensus 1109 Sl~n~~va~icg~~~~~~~~ 1128 (1192)
++.-..=+|+.|+--|-|-.
T Consensus 2237 ~~stFaWlfl~gLhlYRml~ 2256 (2531)
T KOG4289|consen 2237 YLSTFAWLFLEGLHLYRMLT 2256 (2531)
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 77777778888887776544
No 15
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.26 E-value=40 Score=35.12 Aligned_cols=70 Identities=20% Similarity=0.397 Sum_probs=50.2
Q ss_pred CCCcchhhhhhchHHHHHHHHHHHhhhhh-------hhhhhHHHHHhHHhhcchhHHHHHHHHHHHHHHHHHHHHhh---
Q 001005 713 HTPPEQIKEIVYEGAFNSFVDEINAIATY-------HWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSE--- 782 (1192)
Q Consensus 713 ~spP~~i~~iVyed~Fn~Fad~IN~laay-------~~We~~iy~iLsvl~YPlaw~~lq~rRrkk~~rL~efv~se--- 782 (1192)
...|..+++.|..+.|+.=+..+|++-|= ..+|+.+ =++.+|-.|.--.. -=+||+++++||+.++
T Consensus 45 ~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~qty~Egcl---gC~TaY~iy~ctet-hYek~L~klskfl~~qNe~ 120 (154)
T KOG4069|consen 45 AEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITPQTYFEGCL---GCFTAYAIYACTET-HYEKKLDKLSKFLNRQNEE 120 (154)
T ss_pred ecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCcchHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 34789999999999999999999998432 2466664 56666665543332 3357899999999843
Q ss_pred -cCch
Q 001005 783 -YDHA 786 (1192)
Q Consensus 783 -ydh~ 786 (1192)
|.|.
T Consensus 121 IY~~~ 125 (154)
T KOG4069|consen 121 IYHHV 125 (154)
T ss_pred hcccc
Confidence 6664
No 16
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=54.12 E-value=7.6 Score=32.80 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=20.0
Q ss_pred CceEEccCCCCCCCcccceeCCCCccc
Q 001005 535 NGTTTGKACPKGLYGIFCEECPVGTYK 561 (1192)
Q Consensus 535 ~GTI~gk~CP~G~yG~fC~eCP~GtYK 561 (1192)
.|.- .|++++.|..|++|+.|+|-
T Consensus 17 ~G~C---~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 17 TGQC---ECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCEE---ECCCCCCCCCCCcCCCCcCC
Confidence 4544 39999999999999999995
No 17
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=53.86 E-value=25 Score=39.31 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=13.9
Q ss_pred CCCCCCCccEEEEeeccCCcceeEeeeEE
Q 001005 399 SGNSTAGGGIIVMGSFEHPLSSLSVEGSV 427 (1192)
Q Consensus 399 ~~~GGaGGGiI~I~A~~~~L~~L~l~GsI 427 (1192)
...|++||=+|+=.... .| +|..+|.|
T Consensus 125 ~~~g~~GG~~I~N~iG~-rL-RI~N~GaI 151 (260)
T PF05268_consen 125 NSAGAAGGHAIQNDIGG-RL-RINNNGAI 151 (260)
T ss_pred CCCccccceeeecCCcc-eE-EEecCCEE
Confidence 34566777777633221 22 34555555
No 18
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=53.31 E-value=7.8 Score=33.05 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.0
Q ss_pred CCceEEccCCCCCCCcccceeCCCCccccc
Q 001005 534 ENGTTTGKACPKGLYGIFCEECPVGTYKNV 563 (1192)
Q Consensus 534 ~~GTI~gk~CP~G~yG~fC~eCP~GtYK~~ 563 (1192)
.+|+- .|++|+.|..|++|+.|+|...
T Consensus 17 ~~G~C---~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 17 GTGQC---ECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCCEE---eCCCcCCCCCCCCCCCCCccCC
Confidence 45555 3999999999999999999653
No 19
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=52.17 E-value=52 Score=39.09 Aligned_cols=8 Identities=63% Similarity=1.090 Sum_probs=4.2
Q ss_pred ccCCCCCc
Q 001005 94 LEFPNQPL 101 (1192)
Q Consensus 94 l~fp~~~l 101 (1192)
|.||.+|-
T Consensus 152 L~~~k~p~ 159 (465)
T KOG3973|consen 152 LNFPKQPG 159 (465)
T ss_pred cCCCCCCC
Confidence 44565553
No 20
>PTZ00146 fibrillarin; Provisional
Probab=51.27 E-value=34 Score=39.66 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=6.5
Q ss_pred eeeEEEeCCC
Q 001005 423 VEGSVKADGQ 432 (1192)
Q Consensus 423 l~GsI~AnGg 432 (1192)
..|...+.|.
T Consensus 64 ~~gv~~~~~~ 73 (293)
T PTZ00146 64 FPGVFIAKGK 73 (293)
T ss_pred ecCEEEeecC
Confidence 4677777664
No 21
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=50.76 E-value=23 Score=34.90 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=44.9
Q ss_pred hcccCChHHHHHHHHHHHHHHHHh-hcc------------------------ccchhhHhHHHHHhhcCCCccccCCeEE
Q 001005 862 MSQLVPPTICYRLVAGLNAQLRLV-RRG------------------------RLRATFRPVLRWLETHANPTLQLHGLRV 916 (1192)
Q Consensus 862 ~~q~~~~~~w~~fVa~lN~qlR~v-~~~------------------------slr~tl~~vi~~lesh~n~~l~~~Gvrv 916 (1192)
++..+++++|+++|.+||..++.. ..- .-+..+..+=+||+..|++.++.+|+++
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 455789999999999999998877 321 1122344466788888887899999854
Q ss_pred EEEEEEEeceeeEE
Q 001005 917 DLAWFQATACGYCQ 930 (1192)
Q Consensus 917 ~L~~fqata~g~~q 930 (1192)
- -.-.+||-.
T Consensus 106 i----~pr~~g~ls 115 (118)
T PF10256_consen 106 I----SPRRSGYLS 115 (118)
T ss_pred E----chhHceEEE
Confidence 3 233555543
No 22
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=45.25 E-value=13 Score=42.33 Aligned_cols=36 Identities=28% Similarity=0.574 Sum_probs=27.3
Q ss_pred EEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCC
Q 001005 538 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 576 (1192)
Q Consensus 538 I~gk~CP~G~y---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~ 576 (1192)
+.=..|+|||+ -.=|+-|++|||....+ ..|+.|+.
T Consensus 217 v~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~~~---~~C~~C~~ 261 (271)
T PF07354_consen 217 VRIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPDDD---VHCQQCNS 261 (271)
T ss_pred EEeeccCCCCCcCcccCCCCCCeeEECCCcccCCCCC---ceEEecCc
Confidence 34467888886 12499999999987654 58999996
No 23
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=39.22 E-value=13 Score=31.38 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=17.4
Q ss_pred CCCCCCcccceeCCCCccccc
Q 001005 543 CPKGLYGIFCEECPVGTYKNV 563 (1192)
Q Consensus 543 CP~G~yG~fC~eCP~GtYK~~ 563 (1192)
|++++.|..|++|..|+|...
T Consensus 22 C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 22 CKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp BSTTEESTTS-EE-TTEECST
T ss_pred ccccccCCcCcCCCCcccccc
Confidence 999999999999999999764
No 24
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=38.96 E-value=24 Score=49.12 Aligned_cols=34 Identities=32% Similarity=0.708 Sum_probs=25.6
Q ss_pred cCCCCCCCcccceeCCCCccccccCCCCC--CcccCC
Q 001005 541 KACPKGLYGIFCEECPVGTYKNVTGSDKS--LCHQCP 575 (1192)
Q Consensus 541 k~CP~G~yG~fC~eCP~GtYK~~tGs~~~--~C~pCp 575 (1192)
=.||+||-|-||+.|+.|+.+. +..... .|.+|+
T Consensus 697 c~C~~g~tG~~Ce~C~~gfrr~-~~~~~~~~~c~~C~ 732 (1705)
T KOG1836|consen 697 CTCPVGYTGQFCESCAPGFRRL-SPQLGPFCPCIPCD 732 (1705)
T ss_pred ccCCCCcccchhhhcchhhhcc-cccCCCCCcccccc
Confidence 5799999999999999999665 344444 455555
No 25
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.81 E-value=30 Score=34.99 Aligned_cols=20 Identities=35% Similarity=0.891 Sum_probs=9.5
Q ss_pred h-hhHHHHHHHHHHHHHHHHH
Q 001005 626 W-LFCLLLVGLLILLALVLSV 645 (1192)
Q Consensus 626 ~-~F~lll~~llvLlalv~s~ 645 (1192)
| +|+||+++++++|+++..+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 5 4555554444444444433
No 26
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=36.72 E-value=24 Score=49.06 Aligned_cols=43 Identities=35% Similarity=0.688 Sum_probs=34.7
Q ss_pred CceEEccCCCCCCCcccceeCCCCccccccCCC--CCCcccCCCC
Q 001005 535 NGTTTGKACPKGLYGIFCEECPVGTYKNVTGSD--KSLCHQCPPQ 577 (1192)
Q Consensus 535 ~GTI~gk~CP~G~yG~fC~eCP~GtYK~~tGs~--~~~C~pCp~~ 577 (1192)
..++.-|.||+||.|..|++|.-|+|=+..+-+ ...|++|+-+
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~ 838 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCN 838 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceec
Confidence 456667899999999999999999998865432 2489999964
No 27
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=33.30 E-value=1.1e+02 Score=40.77 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=65.5
Q ss_pred Ccccccccccceee--eeeeeeecCccc-chhhhHH---HHHHHHHHhhHHHHHHHHHHHHHhhhh------hHHHHHHh
Q 001005 1004 NNVQMLEERRDIFY--FLSFIVHNTKPV-GHQDLVG---LVISVLLLGDFSLVLLTLLQLYSISLV------DVFLVLFI 1071 (1192)
Q Consensus 1004 ~~l~~le~~r~~~~--p~s~~l~n~rp~-g~~~l~~---l~is~lll~D~~ltll~llq~y~is~~------~~~~vl~~ 1071 (1192)
.+++++.++=|++| |+.+-....-.- ...+.+. +=+.+.++.=......+.+|++-+.=. -=+.||.+
T Consensus 593 g~I~S~R~~~DpL~F~~~~l~~~~~~~~~q~~~~i~R~d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v 672 (909)
T PF11145_consen 593 GSISSTRDKSDPLYFEPLDLSTYPIYYRKQAEESIWRMDLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGV 672 (909)
T ss_pred EEEEeccCCCCCccccceeeeeccceeccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHH
Confidence 36677778888888 665544333111 2233332 111111111122334577898652210 12458888
Q ss_pred ccccccccccchhhhhhcc-CCCCcccccchhhhhhhhhhhH--HHHHhhh
Q 001005 1072 LPLGILLPFPAGINALFSH-GPRRSVGLARVYALWNVTSLIN--VGVAFLC 1119 (1192)
Q Consensus 1072 lPl~~~~p~~~Gl~alfs~-~~rrs~~~ar~yalwN~~Sl~n--~~va~ic 1119 (1192)
+=|+-.+|..++.-|||.. ..++...+.+-=-+|..-.++- ++|||+.
T Consensus 673 ~aLGy~~pLv~n~EaLf~~~~~~~~~~~~~~~w~e~~e~~vr~ltmvAflL 723 (909)
T PF11145_consen 673 QALGYMIPLVLNFEALFKSSHNRQNIFLDSGGWLEVNEVMVRLLTMVAFLL 723 (909)
T ss_pred HHHhccchhhcCHHHHcCcCCCCceEEeecCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999993 3344455544444555555555 4567765
No 28
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=31.12 E-value=29 Score=29.10 Aligned_cols=22 Identities=45% Similarity=1.017 Sum_probs=10.1
Q ss_pred cCCCCCC--Ccccce-eCCCCcccc
Q 001005 541 KACPKGL--YGIFCE-ECPVGTYKN 562 (1192)
Q Consensus 541 k~CP~G~--yG~fC~-eCP~GtYK~ 562 (1192)
+.|++|+ .+..|+ .||.++|.+
T Consensus 18 ~~C~~~~~~~~~~Cv~~C~~~~~~~ 42 (49)
T cd00064 18 TSCRHGFYLDGGTCVSECPEGTYAD 42 (49)
T ss_pred ccCcCccCCCCCcccccCCCCceec
Confidence 3444444 234444 455555443
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.05 E-value=51 Score=44.17 Aligned_cols=40 Identities=28% Similarity=0.598 Sum_probs=28.4
Q ss_pred CCCCCCCcccceeCCCCccccccCCCCCCcccCCCCCCCCCceE
Q 001005 542 ACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVY 585 (1192)
Q Consensus 542 ~CP~G~yG~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~y 585 (1192)
.|-|+--|-.|.+|.+|||- -..+=|++|.=+..-+-..|
T Consensus 785 qCkPnVVGR~CdqCApGtyG----FGPsGCk~CdC~~~Gs~~~~ 824 (1758)
T KOG0994|consen 785 QCKPNVVGRRCDQCAPGTYG----FGPSGCKACDCNSIGSLDKY 824 (1758)
T ss_pred cccCccccccccccCCcccC----cCCccCcccccccccccccc
Confidence 56677779999999999994 34466999986544333333
No 30
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.82 E-value=36 Score=39.26 Aligned_cols=21 Identities=43% Similarity=1.048 Sum_probs=17.1
Q ss_pred CCCCCCCcccceeCCCCcccc
Q 001005 542 ACPKGLYGIFCEECPVGTYKN 562 (1192)
Q Consensus 542 ~CP~G~yG~fC~eCP~GtYK~ 562 (1192)
=||+|.||.-|.+||-|+=+.
T Consensus 131 CCp~gtyGpdCl~Cpggser~ 151 (350)
T KOG4260|consen 131 CCPDGTYGPDCLQCPGGSERP 151 (350)
T ss_pred ccCCCCcCCccccCCCCCcCC
Confidence 488888888888888887554
No 31
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=28.82 E-value=91 Score=35.21 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=6.5
Q ss_pred eeeCCceeEEEecC
Q 001005 468 LDIGDSAVLSSVGG 481 (1192)
Q Consensus 468 l~l~g~G~LsA~GG 481 (1192)
|.+.++|.|...||
T Consensus 143 LRI~N~GaIAgGGG 156 (260)
T PF05268_consen 143 LRINNNGAIAGGGG 156 (260)
T ss_pred EEEecCCEEecCCC
Confidence 44445555544333
No 32
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.43 E-value=44 Score=32.77 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=18.3
Q ss_pred ccceeCCCCccccccCCCCCCcccCCCC
Q 001005 550 IFCEECPVGTYKNVTGSDKSLCHQCPPQ 577 (1192)
Q Consensus 550 ~fC~eCP~GtYK~~tGs~~~~C~pCp~~ 577 (1192)
..|.+|..|+|++..+ ..|.+|+.+
T Consensus 4 ~~Ct~C~~g~~~~~~~---~~C~~C~~~ 28 (96)
T PTZ00382 4 AVCTSCDSDKKPNKDG---SGCVLCSVG 28 (96)
T ss_pred cccCcCCCCCccCCCC---CcCCcCCCC
Confidence 3688999999887533 468888853
No 33
>COG4907 Predicted membrane protein [Function unknown]
Probab=26.31 E-value=43 Score=41.02 Aligned_cols=8 Identities=38% Similarity=0.073 Sum_probs=4.1
Q ss_pred CcEEEEEE
Q 001005 295 LSFTLQIC 302 (1192)
Q Consensus 295 ~~fTLqI~ 302 (1192)
..+||.|.
T Consensus 451 ~v~~L~if 458 (595)
T COG4907 451 TVNTLFIF 458 (595)
T ss_pred ccceeeeh
Confidence 44566553
No 34
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=25.00 E-value=71 Score=36.76 Aligned_cols=12 Identities=50% Similarity=1.041 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCC
Q 001005 356 GSGGGHGGKGGL 367 (1192)
Q Consensus 356 GgGGGHGG~GG~ 367 (1192)
||||+.||.|+.
T Consensus 257 gGGgS~GGGGas 268 (271)
T COG1512 257 GGGGSSGGGGAS 268 (271)
T ss_pred CCCCCCCCCCCC
Confidence 444444444443
No 35
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=43 Score=38.73 Aligned_cols=36 Identities=19% Similarity=0.619 Sum_probs=27.6
Q ss_pred cCCCCCCCcccceeCCCCccccccCCCCCCcccCCC
Q 001005 541 KACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPP 576 (1192)
Q Consensus 541 k~CP~G~yG~fC~eCP~GtYK~~tGs~~~~C~pCp~ 576 (1192)
=.|.+||.|..|.+|..++|...---....|++|..
T Consensus 170 CkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~ 205 (350)
T KOG4260|consen 170 CKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHE 205 (350)
T ss_pred ccccCCCCCccccccchHHHHhhcccccchhhhhhh
Confidence 489999999999999999997643223345777764
No 36
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=23.40 E-value=1.3e+02 Score=35.84 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred CCCCCCcccccccEEEEecCCCCcccCcc
Q 001005 823 RTDLPPCLHHRFPMSLIFGGDGSYMAPFS 851 (1192)
Q Consensus 823 r~dl~~~i~~~~Pm~IlfsGdGSf~~Pf~ 851 (1192)
|.++... ..--.|+|-.||||+|+--=+
T Consensus 96 R~~lsq~-i~waD~VisvGGDGTfL~Aas 123 (395)
T KOG4180|consen 96 RNDLSQP-IRWADMVISVGGDGTFLLAAS 123 (395)
T ss_pred hhhccCc-CchhhEEEEecCccceeehhh
Confidence 4444333 444578999999999987666
No 37
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=23.12 E-value=2.3e+02 Score=30.93 Aligned_cols=29 Identities=41% Similarity=0.522 Sum_probs=21.0
Q ss_pred HhCCch-hhHHHHHHHHHHHHHHHHHhhhh
Q 001005 621 TFGGPW-LFCLLLVGLLILLALVLSVARMK 649 (1192)
Q Consensus 621 tfGGp~-~F~lll~~llvLlalv~s~~R~k 649 (1192)
.+|||+ .-.|||=.|+|-++++++++-.-
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FF 112 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFF 112 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 579998 55566557777788998877543
No 38
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=22.43 E-value=84 Score=43.29 Aligned_cols=36 Identities=36% Similarity=0.866 Sum_probs=28.1
Q ss_pred CCCCceEEccCCCCCCCcccce-----eCCCCccccccCCCCCCcccCC
Q 001005 532 GGENGTTTGKACPKGLYGIFCE-----ECPVGTYKNVTGSDKSLCHQCP 575 (1192)
Q Consensus 532 ~G~~GTI~gk~CP~G~yG~fC~-----eCP~GtYK~~tGs~~~~C~pCp 575 (1192)
+|.+| |.-.||+||+|.+|+ +||.||+-. ..|.||.
T Consensus 1734 p~a~G--Y~C~C~~g~~G~~Ce~~~dq~CPrGWWG~------P~CgpC~ 1774 (2531)
T KOG4289|consen 1734 PGAHG--YTCECPPGYTGPYCELRADQPCPRGWWGF------PTCGPCN 1774 (2531)
T ss_pred CCCCc--eeEECCCcccCcchhhhccCCCCCcccCC------CCccCcc
Confidence 34455 457999999999995 899999843 4588885
No 39
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=22.12 E-value=1.2e+02 Score=37.45 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=4.9
Q ss_pred cccCcccCCc
Q 001005 846 YMAPFSLQND 855 (1192)
Q Consensus 846 f~~Pf~L~sD 855 (1192)
|-.|| |..|
T Consensus 488 ~~gp~-i~ad 496 (641)
T KOG3915|consen 488 FPGPF-IFAD 496 (641)
T ss_pred CCCcc-cccc
Confidence 44666 5544
No 40
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=21.38 E-value=8.8e+02 Score=28.04 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=42.0
Q ss_pred ceecCCCCCcccccCCcEE-EEEEEEEEEEeeeEEeccEEEEEecceEEEcc-CceEeecCCC
Q 001005 280 VELLHPPEDCNVNSSLSFT-LQICRVEDIVVDGLVEGSVVHFHRARTISVQS-SGAISASGMG 340 (1192)
Q Consensus 280 ~~~~~ppe~c~vn~s~~fT-LqI~rVeditv~g~i~GSvV~~~~a~tItI~~-~G~IsASGlG 340 (1192)
+..|.+|.+=++..+++-. |.+-.-|.+.+++. +| -|.+.+-..|.+++ +|.|.-+|.+
T Consensus 162 T~~Irs~~~~~L~leS~trsL~~~a~egV~i~a~-ag-~I~~~a~~di~L~S~~G~i~Lda~~ 222 (264)
T PF04790_consen 162 TPRIRSPPNEDLRLESPTRSLSMRAPEGVHIEAK-AG-DIEASARQDISLNSTDGSIVLDAEG 222 (264)
T ss_pred eccccCCCCcccccccCCcEEEEECCCCeEEEec-cC-cEEEEecCCEEEEecCCeEEEecCe
Confidence 3447778777888777776 77777888888885 33 34555667788877 6888777744
No 41
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=20.83 E-value=1.2e+02 Score=31.02 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=46.8
Q ss_pred hhhhhchHHHHHHHHHHHhhhhhhhhhhHHHHH------hH--HhhcchhHHHHHHHHHHHHHHHHHHHHhhcCchhhc
Q 001005 719 IKEIVYEGAFNSFVDEINAIATYHWWEGAIYSI------LA--ILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLR 789 (1192)
Q Consensus 719 i~~iVyed~Fn~Fad~IN~laay~~We~~iy~i------Ls--vl~YPlaw~~lq~rRrkk~~rL~efv~seydh~clR 789 (1192)
...=|.++++.+|.++++.-++..-+|.++-.. +. +..|=.++.....+.+||-..+.++|. ..|+.|++
T Consensus 43 ~~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~-~WN~~FF~ 120 (123)
T PF15496_consen 43 ASHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTID-QWNEGFFR 120 (123)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHH-HHHHHhcc
Confidence 444568999999999999988887666432221 11 233444555666777777778888886 56666654
Done!