Query 001007
Match_columns 1191
No_of_seqs 495 out of 2350
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 3.5E-82 7.6E-87 761.1 34.5 395 62-465 240-646 (670)
2 KOG0243 Kinesin-like protein [ 100.0 8.2E-80 1.8E-84 745.9 43.4 350 141-509 46-425 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 6.9E-78 1.5E-82 704.9 24.8 348 142-506 3-367 (574)
4 KOG0245 Kinesin-like protein [ 100.0 2.5E-77 5.5E-82 711.5 26.2 344 144-507 4-380 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 1.6E-75 3.6E-80 670.2 39.4 444 142-592 5-472 (607)
6 cd01370 KISc_KIP3_like Kinesin 100.0 1.9E-73 4.2E-78 643.5 30.3 313 145-459 1-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 3E-73 6.5E-78 693.8 33.2 342 143-504 97-469 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 2.2E-72 4.7E-77 634.7 30.6 309 144-459 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.6E-71 3.4E-76 629.6 30.6 307 144-457 1-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 1E-71 2.2E-76 672.5 28.7 349 144-504 6-368 (675)
11 cd01367 KISc_KIF2_like Kinesin 100.0 3.5E-70 7.5E-75 613.2 30.3 306 144-457 1-322 (322)
12 KOG0241 Kinesin-like protein [ 100.0 2.5E-70 5.5E-75 639.3 28.3 392 143-558 3-428 (1714)
13 cd01365 KISc_KIF1A_KIF1B Kines 100.0 9.5E-70 2.1E-74 617.0 31.9 319 144-463 1-353 (356)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 8.9E-69 1.9E-73 604.1 32.3 314 144-459 1-333 (333)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 9.3E-69 2E-73 601.4 31.9 309 144-459 2-325 (325)
16 cd01376 KISc_KID_like Kinesin 100.0 8.7E-69 1.9E-73 601.0 31.4 305 145-457 1-319 (319)
17 cd01366 KISc_C_terminal Kinesi 100.0 1.2E-68 2.6E-73 601.0 32.5 315 143-461 1-328 (329)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.8E-68 3.8E-73 598.5 30.9 306 145-459 1-321 (321)
19 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.1E-68 6.7E-73 603.3 31.5 317 144-464 2-348 (352)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1.8E-67 4E-72 593.9 29.8 310 145-457 1-334 (334)
21 cd01372 KISc_KIF4 Kinesin moto 100.0 4.4E-67 9.6E-72 591.0 30.5 307 145-460 2-341 (341)
22 cd00106 KISc Kinesin motor dom 100.0 2.4E-65 5.1E-70 572.6 32.4 312 145-457 1-328 (328)
23 KOG0247 Kinesin-like protein [ 100.0 3.6E-65 7.8E-70 596.2 33.9 322 141-462 28-439 (809)
24 smart00129 KISc Kinesin motor, 100.0 5.5E-64 1.2E-68 563.9 31.4 316 145-464 1-333 (335)
25 PF00225 Kinesin: Kinesin moto 100.0 7.2E-64 1.6E-68 562.2 23.1 309 151-459 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 2.1E-61 4.6E-66 552.1 25.8 315 144-463 208-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 3.3E-60 7.1E-65 568.3 11.5 341 152-503 1-371 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.7E-55 5.9E-60 524.4 35.1 315 142-466 20-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 8.8E-47 1.9E-51 393.4 16.7 172 203-438 8-186 (186)
30 KOG0239 Kinesin (KAR3 subfamil 100.0 4.5E-32 9.8E-37 328.1 -4.1 652 172-967 12-670 (670)
31 COG5059 KIP1 Kinesin-like prot 98.7 1.5E-10 3.2E-15 140.6 -10.2 263 128-403 290-566 (568)
32 COG1579 Zn-ribbon protein, pos 96.6 0.24 5.2E-06 55.3 20.4 41 626-666 151-192 (239)
33 PRK11637 AmiB activator; Provi 96.5 0.78 1.7E-05 55.0 25.4 9 821-829 378-386 (428)
34 COG4942 Membrane-bound metallo 95.9 1.9 4E-05 51.8 23.9 22 687-708 285-306 (420)
35 TIGR02169 SMC_prok_A chromosom 95.8 0.68 1.5E-05 61.1 22.3 14 223-236 27-40 (1164)
36 PRK11637 AmiB activator; Provi 95.8 0.98 2.1E-05 54.1 21.8 6 700-705 306-311 (428)
37 PF10481 CENP-F_N: Cenp-F N-te 95.7 1.9 4.2E-05 48.8 21.4 65 628-705 162-228 (307)
38 TIGR02169 SMC_prok_A chromosom 95.6 0.92 2E-05 59.9 22.3 11 313-323 118-128 (1164)
39 KOG0980 Actin-binding protein 95.6 1.4 2.9E-05 56.4 22.0 81 751-835 645-751 (980)
40 PF09726 Macoilin: Transmembra 95.5 1.3 2.8E-05 56.5 22.1 37 553-589 543-579 (697)
41 PF13851 GAS: Growth-arrest sp 95.4 2.8 6.1E-05 45.8 21.3 158 467-645 27-199 (201)
42 PF07888 CALCOCO1: Calcium bin 95.3 4.3 9.3E-05 50.3 25.0 39 479-517 155-193 (546)
43 PRK09039 hypothetical protein; 95.3 2.3 5E-05 49.9 21.9 89 548-659 116-204 (343)
44 TIGR02168 SMC_prok_B chromosom 95.2 1.6 3.4E-05 57.6 22.4 10 733-742 977-986 (1179)
45 KOG1853 LIS1-interacting prote 95.1 2 4.3E-05 48.1 19.2 35 626-660 145-182 (333)
46 COG1579 Zn-ribbon protein, pos 95.1 2.2 4.8E-05 47.8 19.9 36 626-661 140-175 (239)
47 TIGR02168 SMC_prok_B chromosom 95.0 2.3 4.9E-05 56.1 23.2 9 863-871 1071-1079(1179)
48 PF09726 Macoilin: Transmembra 95.0 1.7 3.6E-05 55.5 20.9 27 633-659 634-660 (697)
49 PF12718 Tropomyosin_1: Tropom 94.7 3.5 7.6E-05 42.9 19.0 56 539-594 85-140 (143)
50 PF09755 DUF2046: Uncharacteri 94.7 3.9 8.4E-05 47.4 21.0 94 551-661 109-204 (310)
51 PF07888 CALCOCO1: Calcium bin 94.7 5.6 0.00012 49.3 23.5 27 632-658 435-461 (546)
52 KOG0996 Structural maintenance 94.7 0.89 1.9E-05 59.5 17.2 53 541-593 472-524 (1293)
53 KOG4673 Transcription factor T 94.6 5.6 0.00012 49.9 22.7 50 490-539 607-660 (961)
54 PF08317 Spc7: Spc7 kinetochor 94.5 2.5 5.5E-05 49.1 19.4 46 546-591 221-266 (325)
55 PF05667 DUF812: Protein of un 94.4 3.7 8E-05 51.7 21.4 30 745-783 553-582 (594)
56 PF00038 Filament: Intermediat 94.2 8.8 0.00019 43.8 22.6 28 629-656 263-290 (312)
57 PF10168 Nup88: Nuclear pore c 94.1 5.9 0.00013 51.0 22.7 81 564-657 634-714 (717)
58 KOG0250 DNA repair protein RAD 93.9 3.8 8.1E-05 53.8 20.5 62 533-594 357-419 (1074)
59 PF05667 DUF812: Protein of un 93.8 5.2 0.00011 50.4 21.3 36 624-659 494-529 (594)
60 PF00308 Bac_DnaA: Bacterial d 93.7 0.035 7.5E-07 60.6 2.2 50 186-237 3-52 (219)
61 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 9 0.0002 39.1 20.1 33 628-660 98-130 (132)
62 KOG0250 DNA repair protein RAD 93.6 6.8 0.00015 51.6 22.0 20 217-237 61-80 (1074)
63 COG0556 UvrB Helicase subunit 93.6 0.083 1.8E-06 64.1 5.0 87 186-281 3-100 (663)
64 PRK09039 hypothetical protein; 93.5 11 0.00024 44.4 22.2 42 551-592 112-153 (343)
65 KOG0971 Microtubule-associated 93.5 4.3 9.4E-05 52.2 19.4 15 731-749 599-613 (1243)
66 COG1196 Smc Chromosome segrega 93.5 5.3 0.00011 54.0 22.0 21 774-794 985-1005(1163)
67 COG5185 HEC1 Protein involved 93.4 1.5 3.3E-05 52.6 14.7 90 564-660 332-421 (622)
68 PF12325 TMF_TATA_bd: TATA ele 93.3 3.3 7.1E-05 42.1 15.1 97 476-594 18-114 (120)
69 smart00787 Spc7 Spc7 kinetocho 93.3 6 0.00013 46.1 19.3 52 541-592 211-262 (312)
70 PF14662 CCDC155: Coiled-coil 93.2 14 0.0003 40.4 20.3 24 482-505 30-53 (193)
71 KOG2129 Uncharacterized conser 93.1 9.8 0.00021 45.5 20.3 63 575-646 252-314 (552)
72 KOG4643 Uncharacterized coiled 93.0 6.2 0.00014 51.4 19.9 19 1067-1085 1002-1020(1195)
73 KOG1029 Endocytic adaptor prot 93.0 6.7 0.00015 49.8 19.7 19 935-953 820-838 (1118)
74 COG1196 Smc Chromosome segrega 93.0 9.3 0.0002 51.7 23.1 21 213-236 21-41 (1163)
75 PRK03918 chromosome segregatio 92.9 15 0.00033 47.7 24.4 91 556-658 392-482 (880)
76 KOG0977 Nuclear envelope prote 92.9 11 0.00023 47.0 21.4 115 475-589 100-217 (546)
77 PF12718 Tropomyosin_1: Tropom 92.9 11 0.00023 39.3 18.5 57 538-594 77-133 (143)
78 PHA02562 46 endonuclease subun 92.7 9.7 0.00021 46.8 21.2 16 221-236 29-44 (562)
79 KOG0976 Rho/Rac1-interacting s 92.6 4.4 9.5E-05 51.5 17.4 11 933-943 688-698 (1265)
80 KOG0995 Centromere-associated 92.5 22 0.00047 44.4 23.0 32 473-504 293-324 (581)
81 KOG0161 Myosin class II heavy 92.5 8.1 0.00018 54.2 21.6 25 306-330 682-706 (1930)
82 PF00038 Filament: Intermediat 92.5 13 0.00028 42.5 20.4 33 59-91 7-39 (312)
83 KOG1029 Endocytic adaptor prot 92.4 14 0.0003 47.2 21.2 37 625-661 473-509 (1118)
84 KOG4643 Uncharacterized coiled 92.3 7.9 0.00017 50.6 19.6 64 440-503 250-337 (1195)
85 PF11559 ADIP: Afadin- and alp 92.3 5.9 0.00013 40.9 15.9 45 538-585 105-149 (151)
86 KOG4809 Rab6 GTPase-interactin 92.3 12 0.00027 46.0 20.2 110 482-595 332-447 (654)
87 KOG0971 Microtubule-associated 92.2 13 0.00029 48.1 21.1 71 483-554 405-475 (1243)
88 PRK02224 chromosome segregatio 92.2 15 0.00034 47.8 23.0 30 632-661 603-632 (880)
89 PHA02562 46 endonuclease subun 92.0 20 0.00044 44.1 22.7 59 535-593 221-279 (562)
90 PF06785 UPF0242: Uncharacteri 91.9 18 0.00038 42.5 20.0 28 480-507 91-118 (401)
91 PF10174 Cast: RIM-binding pro 91.8 16 0.00035 47.4 22.0 119 476-594 289-410 (775)
92 PF15254 CCDC14: Coiled-coil d 91.8 13 0.00029 47.5 20.5 28 632-659 526-553 (861)
93 PF09789 DUF2353: Uncharacteri 91.8 15 0.00033 43.0 19.8 110 482-598 73-183 (319)
94 KOG0996 Structural maintenance 91.7 7.5 0.00016 51.5 18.8 12 225-236 114-125 (1293)
95 COG4372 Uncharacterized protei 91.7 28 0.0006 41.6 21.6 53 391-455 8-67 (499)
96 PF14662 CCDC155: Coiled-coil 91.7 23 0.0005 38.8 19.6 35 483-517 10-44 (193)
97 KOG1937 Uncharacterized conser 91.6 11 0.00023 45.7 18.5 86 555-661 293-378 (521)
98 PF06785 UPF0242: Uncharacteri 91.3 23 0.00051 41.5 20.1 102 547-661 126-227 (401)
99 KOG0161 Myosin class II heavy 91.1 8.2 0.00018 54.2 19.4 17 1126-1142 1622-1638(1930)
100 KOG0612 Rho-associated, coiled 90.7 11 0.00023 50.4 18.8 32 628-661 667-698 (1317)
101 PRK03918 chromosome segregatio 90.7 37 0.00081 44.2 24.3 14 223-236 27-40 (880)
102 PRK04863 mukB cell division pr 90.7 12 0.00026 51.8 20.3 17 221-237 29-45 (1486)
103 KOG4674 Uncharacterized conser 90.6 30 0.00065 48.5 23.4 118 534-660 1229-1346(1822)
104 PRK04863 mukB cell division pr 90.5 27 0.00059 48.5 23.4 12 414-425 211-222 (1486)
105 PF08614 ATG16: Autophagy prot 90.5 2.6 5.6E-05 45.5 11.4 45 548-592 116-160 (194)
106 PRK02224 chromosome segregatio 90.4 39 0.00084 44.2 24.0 14 223-236 27-40 (880)
107 PF10168 Nup88: Nuclear pore c 90.2 13 0.00028 48.0 19.0 32 562-593 639-670 (717)
108 KOG0995 Centromere-associated 90.2 5.5 0.00012 49.3 14.9 33 563-595 295-327 (581)
109 PF05483 SCP-1: Synaptonemal c 90.1 40 0.00086 43.0 22.0 27 121-147 167-193 (786)
110 KOG0976 Rho/Rac1-interacting s 90.0 10 0.00022 48.4 17.0 15 390-404 41-55 (1265)
111 PF12128 DUF3584: Protein of u 90.0 42 0.00092 45.9 24.5 28 629-656 772-799 (1201)
112 PF12325 TMF_TATA_bd: TATA ele 89.9 13 0.00028 37.9 15.0 23 482-504 31-53 (120)
113 PF08317 Spc7: Spc7 kinetochor 89.9 15 0.00033 42.8 17.9 58 541-598 209-266 (325)
114 KOG0994 Extracellular matrix g 89.8 54 0.0012 44.0 23.3 19 643-661 1690-1708(1758)
115 PRK10884 SH3 domain-containing 89.8 4.4 9.5E-05 44.6 12.6 21 488-508 93-113 (206)
116 KOG0977 Nuclear envelope prote 89.6 38 0.00083 42.4 21.5 117 477-593 95-214 (546)
117 COG4942 Membrane-bound metallo 89.6 45 0.00097 40.6 21.5 23 483-505 61-83 (420)
118 KOG0978 E3 ubiquitin ligase in 89.5 23 0.0005 45.4 19.9 38 624-661 583-620 (698)
119 KOG0946 ER-Golgi vesicle-tethe 89.4 11 0.00023 48.5 16.7 27 568-594 736-762 (970)
120 PF04849 HAP1_N: HAP1 N-termin 89.4 20 0.00044 41.7 17.9 21 482-502 168-188 (306)
121 PRK06620 hypothetical protein; 89.3 0.21 4.6E-06 54.5 2.2 50 185-237 10-62 (214)
122 PRK12377 putative replication 89.3 0.24 5.2E-06 55.5 2.6 50 188-238 71-120 (248)
123 PF04156 IncA: IncA protein; 89.2 25 0.00054 37.5 17.6 23 567-589 163-185 (191)
124 PRK14086 dnaA chromosomal repl 89.1 0.28 6E-06 61.4 3.2 51 185-237 282-332 (617)
125 KOG0933 Structural maintenance 89.1 27 0.00059 46.0 20.2 19 200-218 369-387 (1174)
126 TIGR00606 rad50 rad50. This fa 88.9 16 0.00034 50.2 19.6 26 775-800 1136-1161(1311)
127 PRK08084 DNA replication initi 88.9 0.27 5.9E-06 54.2 2.6 47 186-237 17-63 (235)
128 KOG2991 Splicing regulator [RN 88.8 29 0.00063 39.5 17.9 30 632-661 282-311 (330)
129 TIGR00606 rad50 rad50. This fa 88.8 24 0.00051 48.6 21.1 9 733-741 1127-1135(1311)
130 PRK10929 putative mechanosensi 88.8 53 0.0011 44.6 23.4 44 930-973 598-647 (1109)
131 TIGR01242 26Sp45 26S proteasom 88.7 1 2.2E-05 52.8 7.3 17 220-236 157-173 (364)
132 PRK06893 DNA replication initi 88.7 0.3 6.5E-06 53.5 2.9 47 186-237 11-57 (229)
133 PF09738 DUF2051: Double stran 88.6 26 0.00056 40.9 18.2 65 530-594 101-165 (302)
134 COG2805 PilT Tfp pilus assembl 88.5 0.22 4.7E-06 57.3 1.6 29 208-236 114-142 (353)
135 PF00261 Tropomyosin: Tropomyo 88.5 46 0.001 37.2 22.2 26 573-598 166-191 (237)
136 KOG0933 Structural maintenance 88.5 33 0.00071 45.3 20.3 22 383-404 684-705 (1174)
137 KOG0980 Actin-binding protein 88.4 53 0.0011 43.0 21.8 13 243-255 199-211 (980)
138 KOG0804 Cytoplasmic Zn-finger 88.4 18 0.0004 43.8 17.0 25 565-589 424-448 (493)
139 PF00261 Tropomyosin: Tropomyo 88.3 47 0.001 37.1 20.0 42 552-593 173-214 (237)
140 PRK07952 DNA replication prote 88.3 0.39 8.4E-06 53.8 3.4 50 187-237 68-117 (244)
141 smart00787 Spc7 Spc7 kinetocho 88.1 25 0.00055 41.1 17.9 57 542-598 205-261 (312)
142 PF10498 IFT57: Intra-flagella 88.0 26 0.00057 41.7 18.2 38 470-507 216-253 (359)
143 PF09728 Taxilin: Myosin-like 87.8 47 0.001 38.8 19.8 37 478-514 118-154 (309)
144 COG4372 Uncharacterized protei 87.8 71 0.0015 38.4 22.9 13 852-864 469-481 (499)
145 PRK14088 dnaA chromosomal repl 87.8 0.34 7.3E-06 58.4 2.7 50 185-237 99-148 (440)
146 KOG0963 Transcription factor/C 87.8 62 0.0013 41.0 21.4 84 558-661 185-268 (629)
147 PF15619 Lebercilin: Ciliary p 87.5 38 0.00082 37.2 17.7 23 572-594 167-189 (194)
148 PRK05642 DNA replication initi 87.5 0.4 8.6E-06 52.9 2.8 50 186-237 14-63 (234)
149 KOG0728 26S proteasome regulat 87.5 3.6 7.7E-05 46.7 10.0 17 219-235 181-197 (404)
150 TIGR00362 DnaA chromosomal rep 87.4 0.39 8.4E-06 56.8 2.9 51 185-237 104-154 (405)
151 PF10174 Cast: RIM-binding pro 87.4 44 0.00096 43.6 20.9 29 632-660 511-539 (775)
152 PTZ00454 26S protease regulato 87.2 1.3 2.8E-05 53.0 7.0 51 186-236 140-196 (398)
153 PF00769 ERM: Ezrin/radixin/mo 87.1 27 0.00058 39.5 16.8 114 484-597 8-124 (246)
154 PRK08116 hypothetical protein; 86.9 0.29 6.2E-06 55.3 1.4 51 186-237 80-132 (268)
155 KOG0804 Cytoplasmic Zn-finger 86.9 32 0.00069 41.9 17.8 29 567-595 419-447 (493)
156 PRK00149 dnaA chromosomal repl 86.6 0.44 9.5E-06 57.3 2.8 51 185-237 116-166 (450)
157 TIGR03420 DnaA_homol_Hda DnaA 86.4 0.5 1.1E-05 50.6 2.8 47 186-237 10-56 (226)
158 KOG0612 Rho-associated, coiled 86.4 76 0.0017 43.0 22.1 16 440-455 583-598 (1317)
159 PF15070 GOLGA2L5: Putative go 86.3 1.1E+02 0.0024 39.2 23.2 48 545-592 164-211 (617)
160 COG5185 HEC1 Protein involved 86.3 84 0.0018 38.7 20.7 31 474-504 330-360 (622)
161 PRK03992 proteasome-activating 86.2 1.5 3.4E-05 52.0 6.9 17 220-236 166-182 (389)
162 COG2804 PulE Type II secretory 86.0 0.4 8.7E-06 58.4 2.0 31 208-238 247-277 (500)
163 KOG4674 Uncharacterized conser 85.9 45 0.00098 46.9 20.5 27 535-561 1315-1341(1822)
164 KOG0727 26S proteasome regulat 85.8 3.6 7.7E-05 46.7 8.9 123 138-260 91-247 (408)
165 KOG4807 F-actin binding protei 85.5 50 0.0011 39.5 18.1 44 516-559 396-439 (593)
166 KOG0946 ER-Golgi vesicle-tethe 85.5 7.4 0.00016 49.8 12.3 54 540-593 663-716 (970)
167 PF04849 HAP1_N: HAP1 N-termin 85.4 23 0.0005 41.3 15.4 28 483-510 162-189 (306)
168 PRK08903 DnaA regulatory inact 85.3 0.66 1.4E-05 50.2 3.1 48 186-237 13-60 (227)
169 PRK09087 hypothetical protein; 85.2 0.55 1.2E-05 51.7 2.4 47 186-237 16-62 (226)
170 PF13851 GAS: Growth-arrest sp 84.9 67 0.0014 35.4 23.3 25 488-512 27-51 (201)
171 PF12128 DUF3584: Protein of u 84.6 1E+02 0.0022 42.4 23.3 14 1130-1143 1072-1085(1201)
172 PF10473 CENP-F_leu_zip: Leuci 84.5 56 0.0012 34.3 18.1 21 488-508 17-37 (140)
173 PRK06835 DNA replication prote 84.5 0.34 7.4E-06 56.4 0.5 36 201-237 166-201 (329)
174 PRK14087 dnaA chromosomal repl 84.4 0.6 1.3E-05 56.6 2.5 49 187-237 111-159 (450)
175 COG0593 DnaA ATPase involved i 84.4 0.59 1.3E-05 56.0 2.4 51 185-237 81-131 (408)
176 PF09730 BicD: Microtubule-ass 84.1 1.5E+02 0.0032 38.7 24.4 76 1021-1113 590-681 (717)
177 PF08614 ATG16: Autophagy prot 84.0 11 0.00024 40.7 11.6 49 544-592 119-167 (194)
178 TIGR01843 type_I_hlyD type I s 83.9 83 0.0018 37.0 19.7 22 636-657 247-268 (423)
179 PF10146 zf-C4H2: Zinc finger- 83.9 41 0.00088 37.9 16.1 57 535-591 47-103 (230)
180 TIGR01843 type_I_hlyD type I s 83.8 98 0.0021 36.4 22.2 19 632-650 250-268 (423)
181 PF10186 Atg14: UV radiation r 83.6 82 0.0018 35.4 19.2 23 483-505 22-44 (302)
182 PF04012 PspA_IM30: PspA/IM30 83.5 44 0.00095 36.6 16.1 42 549-590 99-140 (221)
183 PF04111 APG6: Autophagy prote 83.3 21 0.00045 41.7 14.2 41 558-598 95-135 (314)
184 KOG4360 Uncharacterized coiled 82.9 56 0.0012 40.5 17.5 23 480-502 165-187 (596)
185 KOG0964 Structural maintenance 82.4 1.5E+02 0.0032 39.7 21.7 19 313-331 117-135 (1200)
186 PF14915 CCDC144C: CCDC144C pr 82.3 66 0.0014 37.5 17.1 17 487-503 5-21 (305)
187 KOG0963 Transcription factor/C 82.1 1.6E+02 0.0034 37.6 24.0 34 477-510 238-271 (629)
188 KOG0994 Extracellular matrix g 81.8 1.4E+02 0.003 40.5 21.2 25 637-661 1726-1750(1758)
189 PF04111 APG6: Autophagy prote 81.7 25 0.00054 41.1 14.1 87 485-589 47-133 (314)
190 KOG2751 Beclin-like protein [S 81.7 88 0.0019 38.2 18.4 32 567-598 237-268 (447)
191 COG2433 Uncharacterized conser 81.5 24 0.00052 44.3 14.2 24 566-589 485-508 (652)
192 PF10498 IFT57: Intra-flagella 81.5 62 0.0013 38.7 17.3 95 493-594 225-319 (359)
193 PF15254 CCDC14: Coiled-coil d 81.5 1.2E+02 0.0025 39.6 20.1 43 552-594 512-554 (861)
194 TIGR02928 orc1/cdc6 family rep 81.5 0.96 2.1E-05 52.2 2.6 38 199-236 19-57 (365)
195 PF11559 ADIP: Afadin- and alp 81.4 71 0.0015 33.1 18.1 20 630-649 128-147 (151)
196 PRK10884 SH3 domain-containing 81.3 21 0.00046 39.4 12.6 28 478-505 90-117 (206)
197 PF15070 GOLGA2L5: Putative go 80.9 1.5E+02 0.0033 37.9 21.4 13 1134-1146 575-587 (617)
198 COG1484 DnaC DNA replication p 80.8 1.1 2.3E-05 50.4 2.6 49 188-238 76-124 (254)
199 PF05701 WEMBL: Weak chloropla 80.6 1.6E+02 0.0035 36.8 23.5 32 481-512 295-326 (522)
200 PF10473 CENP-F_leu_zip: Leuci 80.6 80 0.0017 33.2 18.9 57 534-593 80-136 (140)
201 KOG4673 Transcription factor T 80.5 1.6E+02 0.0034 37.9 20.4 58 1018-1092 901-959 (961)
202 PF13863 DUF4200: Domain of un 80.5 65 0.0014 32.1 16.3 28 567-594 79-106 (126)
203 PRK08727 hypothetical protein; 80.3 0.91 2E-05 50.0 1.8 45 186-237 14-59 (233)
204 COG1340 Uncharacterized archae 80.2 1.3E+02 0.0028 35.3 21.3 92 487-589 157-248 (294)
205 PF07798 DUF1640: Protein of u 80.2 89 0.0019 33.5 18.9 18 575-592 137-154 (177)
206 PF15290 Syntaphilin: Golgi-lo 80.0 31 0.00068 39.7 13.4 21 483-503 84-104 (305)
207 KOG2129 Uncharacterized conser 80.0 22 0.00048 42.7 12.7 18 787-804 300-317 (552)
208 PRK00411 cdc6 cell division co 79.9 1.5 3.2E-05 51.3 3.5 37 200-236 35-72 (394)
209 PF04851 ResIII: Type III rest 79.9 0.99 2.2E-05 45.8 1.8 36 200-238 8-44 (184)
210 PF15066 CAGE1: Cancer-associa 79.8 1.6E+02 0.0035 36.3 21.9 23 567-589 451-473 (527)
211 KOG0978 E3 ubiquitin ligase in 79.8 97 0.0021 40.1 19.0 53 541-593 566-618 (698)
212 PRK08939 primosomal protein Dn 79.4 0.97 2.1E-05 52.2 1.7 52 187-238 123-175 (306)
213 KOG0240 Kinesin (SMY1 subfamil 79.3 1.5E+02 0.0032 37.6 19.6 32 568-599 516-547 (607)
214 KOG0018 Structural maintenance 79.2 74 0.0016 42.6 17.9 38 624-661 398-435 (1141)
215 PF05622 HOOK: HOOK protein; 79.2 0.61 1.3E-05 59.5 0.0 31 625-655 381-411 (713)
216 PRK04778 septation ring format 79.2 1.1E+02 0.0024 38.5 19.5 14 733-746 542-555 (569)
217 KOG4360 Uncharacterized coiled 79.2 1E+02 0.0023 38.3 18.1 104 482-592 160-263 (596)
218 PF02841 GBP_C: Guanylate-bind 79.1 70 0.0015 36.9 16.5 17 573-589 281-297 (297)
219 KOG0999 Microtubule-associated 79.0 69 0.0015 40.0 16.6 30 478-507 47-76 (772)
220 KOG2991 Splicing regulator [RN 78.9 92 0.002 35.7 16.4 62 537-598 239-300 (330)
221 COG1340 Uncharacterized archae 78.8 46 0.00099 38.8 14.5 24 635-658 179-202 (294)
222 PRK04778 septation ring format 78.7 78 0.0017 39.9 17.9 27 774-801 516-542 (569)
223 PF09730 BicD: Microtubule-ass 78.2 2.3E+02 0.005 37.1 26.2 46 543-588 99-147 (717)
224 PF13870 DUF4201: Domain of un 78.1 1E+02 0.0022 32.9 19.3 24 631-654 148-171 (177)
225 PF10226 DUF2216: Uncharacteri 78.0 1.2E+02 0.0025 33.5 16.8 48 475-522 42-89 (195)
226 PRK08181 transposase; Validate 78.0 1.1 2.4E-05 50.9 1.6 21 216-238 105-125 (269)
227 KOG0979 Structural maintenance 77.9 66 0.0014 42.8 16.8 15 223-237 46-60 (1072)
228 KOG1853 LIS1-interacting prote 77.8 1.4E+02 0.003 34.3 23.8 29 632-661 161-189 (333)
229 PRK01156 chromosome segregatio 77.7 2.5E+02 0.0054 37.2 24.8 16 221-236 25-40 (895)
230 KOG0249 LAR-interacting protei 77.2 81 0.0017 40.6 16.8 36 475-510 92-127 (916)
231 PRK06526 transposase; Provisio 77.1 1.2 2.6E-05 50.1 1.5 21 216-238 97-117 (254)
232 PRK11281 hypothetical protein; 77.0 2.4E+02 0.0052 38.7 22.4 31 564-594 229-259 (1113)
233 PLN03188 kinesin-12 family pro 76.7 2.1E+02 0.0046 39.4 21.2 67 528-594 1115-1191(1320)
234 KOG1003 Actin filament-coating 76.2 1.3E+02 0.0029 33.3 18.3 26 632-657 113-138 (205)
235 PRK12422 chromosomal replicati 76.1 1.8 4E-05 52.4 2.8 52 184-237 104-159 (445)
236 TIGR01005 eps_transp_fam exopo 75.9 1.7E+02 0.0038 37.8 20.4 33 756-799 429-461 (754)
237 PF05384 DegS: Sensor protein 75.8 1.2E+02 0.0026 32.6 19.6 56 539-594 96-151 (159)
238 COG1474 CDC6 Cdc6-related prot 75.8 1.6 3.5E-05 51.7 2.2 30 207-236 29-59 (366)
239 COG2433 Uncharacterized conser 75.4 47 0.001 41.9 14.2 14 436-449 336-349 (652)
240 cd00046 DEXDc DEAD-like helica 75.2 1.2 2.7E-05 41.9 0.9 17 222-238 3-19 (144)
241 PF09789 DUF2353: Uncharacteri 75.2 1.7E+02 0.0037 34.6 18.0 34 628-661 126-159 (319)
242 PF00437 T2SE: Type II/IV secr 75.0 2.9 6.4E-05 46.5 3.9 29 207-236 116-144 (270)
243 KOG0964 Structural maintenance 74.8 1.4E+02 0.003 39.9 18.2 50 1077-1129 855-904 (1200)
244 cd00009 AAA The AAA+ (ATPases 74.7 1.9 4.1E-05 41.2 2.0 19 218-236 18-36 (151)
245 PTZ00112 origin recognition co 74.7 1.3 2.9E-05 57.3 1.2 32 205-236 765-798 (1164)
246 PF05266 DUF724: Protein of un 74.4 1.4E+02 0.0031 32.8 16.6 53 540-592 130-182 (190)
247 PF05701 WEMBL: Weak chloropla 74.3 2.4E+02 0.0052 35.4 22.8 19 574-592 335-353 (522)
248 KOG0999 Microtubule-associated 74.3 2.5E+02 0.0053 35.5 20.3 35 916-959 492-533 (772)
249 PF10146 zf-C4H2: Zinc finger- 74.1 1E+02 0.0023 34.8 15.5 68 531-598 36-103 (230)
250 smart00053 DYNc Dynamin, GTPas 73.9 11 0.00023 42.5 7.9 54 310-372 85-138 (240)
251 PRK12704 phosphodiesterase; Pr 73.8 2.5E+02 0.0054 35.3 21.1 32 766-799 278-309 (520)
252 PRK09343 prefoldin subunit bet 73.6 1.1E+02 0.0024 31.1 14.5 39 561-599 77-115 (121)
253 PRK06921 hypothetical protein; 73.6 2 4.2E-05 48.7 2.0 51 187-237 80-135 (266)
254 PF13191 AAA_16: AAA ATPase do 73.5 1.6 3.6E-05 44.6 1.3 33 204-236 9-41 (185)
255 PRK12402 replication factor C 73.5 1.8 3.9E-05 49.1 1.8 42 189-237 13-54 (337)
256 TIGR02538 type_IV_pilB type IV 73.4 1.4 3E-05 55.0 0.9 28 210-237 307-334 (564)
257 KOG0992 Uncharacterized conser 73.4 1.2E+02 0.0026 37.7 16.5 37 627-663 388-424 (613)
258 PRK10436 hypothetical protein; 73.2 1.5 3.2E-05 53.6 1.0 28 210-237 209-236 (462)
259 PRK00409 recombination and DNA 73.0 1.1E+02 0.0023 40.3 17.4 38 921-958 737-775 (782)
260 PF15619 Lebercilin: Ciliary p 73.0 1.5E+02 0.0033 32.6 24.1 22 640-661 169-190 (194)
261 PF13863 DUF4200: Domain of un 72.8 1.1E+02 0.0023 30.6 16.7 23 567-589 86-108 (126)
262 TIGR02338 gimC_beta prefoldin, 72.7 98 0.0021 30.7 13.4 35 562-596 74-108 (110)
263 KOG4302 Microtubule-associated 72.6 1.4E+02 0.0031 38.5 17.7 34 627-660 232-265 (660)
264 PF13401 AAA_22: AAA domain; P 72.6 1.4 2.9E-05 42.9 0.5 18 219-236 4-21 (131)
265 PF10212 TTKRSYEDQ: Predicted 72.6 81 0.0018 39.4 15.2 27 556-582 488-514 (518)
266 KOG4809 Rab6 GTPase-interactin 72.3 60 0.0013 40.5 13.8 31 630-660 375-405 (654)
267 KOG0288 WD40 repeat protein Ti 72.3 1.8E+02 0.004 35.4 17.4 17 738-754 225-241 (459)
268 KOG0018 Structural maintenance 72.2 3.5E+02 0.0075 36.8 21.1 42 479-520 308-349 (1141)
269 PRK10698 phage shock protein P 72.2 1.5E+02 0.0032 33.1 16.1 113 486-598 29-142 (222)
270 TIGR02977 phageshock_pspA phag 72.1 1.5E+02 0.0033 32.8 16.1 37 556-592 100-136 (219)
271 COG1842 PspA Phage shock prote 72.1 1.8E+02 0.0038 32.9 20.1 44 548-591 99-142 (225)
272 PF07889 DUF1664: Protein of u 72.0 87 0.0019 32.4 13.0 43 547-589 81-123 (126)
273 TIGR02533 type_II_gspE general 71.8 1.8 3.9E-05 53.1 1.3 28 210-237 233-260 (486)
274 PF06818 Fez1: Fez1; InterPro 71.3 1.2E+02 0.0025 33.9 14.6 8 582-589 93-100 (202)
275 PF00270 DEAD: DEAD/DEAH box h 71.0 2.3 5E-05 42.9 1.7 26 210-237 7-32 (169)
276 KOG0288 WD40 repeat protein Ti 70.9 1.8E+02 0.004 35.5 17.0 34 724-757 225-263 (459)
277 PF01935 DUF87: Domain of unkn 70.8 1.7 3.7E-05 47.0 0.7 15 222-236 26-40 (229)
278 PF15450 DUF4631: Domain of un 70.4 2.9E+02 0.0063 34.7 20.4 116 484-599 354-478 (531)
279 PF12846 AAA_10: AAA-like doma 70.3 1.7 3.8E-05 47.7 0.7 19 219-237 1-19 (304)
280 PF10212 TTKRSYEDQ: Predicted 70.2 1E+02 0.0022 38.6 15.2 30 528-557 474-503 (518)
281 cd01131 PilT Pilus retraction 70.1 1.9 4.1E-05 46.4 0.9 19 219-237 1-19 (198)
282 PF05483 SCP-1: Synaptonemal c 70.0 3.4E+02 0.0073 35.3 22.4 39 481-519 527-565 (786)
283 PF10267 Tmemb_cc2: Predicted 70.0 1.5E+02 0.0033 36.0 16.5 46 544-589 272-318 (395)
284 TIGR03319 YmdA_YtgF conserved 69.8 3E+02 0.0065 34.6 22.7 52 737-799 249-303 (514)
285 smart00382 AAA ATPases associa 69.7 2 4.3E-05 40.4 0.9 18 220-237 3-20 (148)
286 COG5008 PilU Tfp pilus assembl 69.6 3 6.5E-05 47.7 2.3 34 204-237 110-145 (375)
287 TIGR01420 pilT_fam pilus retra 69.6 2.2 4.8E-05 49.8 1.4 28 210-237 113-140 (343)
288 KOG0979 Structural maintenance 69.5 3.9E+02 0.0085 36.1 20.7 10 166-175 17-26 (1072)
289 TIGR00634 recN DNA repair prot 69.5 1.3E+02 0.0028 37.8 16.7 14 223-236 26-39 (563)
290 TIGR03752 conj_TIGR03752 integ 69.3 43 0.00092 41.3 11.8 20 574-593 121-140 (472)
291 PRK10865 protein disaggregatio 69.2 9.9 0.00021 49.9 7.2 45 188-236 565-615 (857)
292 PF15294 Leu_zip: Leucine zipp 69.1 1.6E+02 0.0035 34.2 15.8 33 485-517 129-161 (278)
293 PF13245 AAA_19: Part of AAA d 68.5 2.3 5.1E-05 39.4 1.0 26 211-237 3-28 (76)
294 TIGR00634 recN DNA repair prot 67.9 2.3E+02 0.005 35.7 18.3 19 750-768 440-458 (563)
295 TIGR03007 pepcterm_ChnLen poly 67.8 1.4E+02 0.0031 36.5 16.2 175 477-654 157-350 (498)
296 PF03915 AIP3: Actin interacti 67.7 3E+02 0.0066 33.9 18.7 96 484-579 216-316 (424)
297 TIGR02680 conserved hypothetic 67.4 5.2E+02 0.011 36.4 23.2 16 222-237 27-42 (1353)
298 PF10186 Atg14: UV radiation r 67.3 2.2E+02 0.0047 32.0 18.9 17 974-990 276-292 (302)
299 TIGR02525 plasmid_TraJ plasmid 67.1 2.7 6E-05 49.9 1.5 20 218-237 148-167 (372)
300 PRK13894 conjugal transfer ATP 66.4 8.3 0.00018 45.0 5.2 28 208-236 138-165 (319)
301 KOG0982 Centrosomal protein Nu 66.4 3.2E+02 0.0069 33.6 20.5 29 633-661 365-393 (502)
302 COG1382 GimC Prefoldin, chaper 66.4 1.6E+02 0.0035 30.2 14.6 42 557-598 72-113 (119)
303 KOG0243 Kinesin-like protein [ 66.3 2.9E+02 0.0064 37.4 19.0 21 390-410 376-397 (1041)
304 TIGR02524 dot_icm_DotB Dot/Icm 65.8 3 6.5E-05 49.3 1.5 20 218-237 133-152 (358)
305 KOG2751 Beclin-like protein [S 65.8 2E+02 0.0042 35.4 16.0 9 408-416 83-91 (447)
306 PF06818 Fez1: Fez1; InterPro 65.5 2.3E+02 0.005 31.6 15.8 92 469-560 12-106 (202)
307 PF10211 Ax_dynein_light: Axon 65.4 2.1E+02 0.0046 31.2 18.7 26 634-659 162-187 (189)
308 PHA01754 hypothetical protein 65.2 10 0.00022 34.3 4.2 49 991-1048 12-60 (69)
309 PRK09841 cryptic autophosphory 65.1 4.1E+02 0.0088 34.7 20.2 26 425-450 224-249 (726)
310 PF01920 Prefoldin_2: Prefoldi 65.0 74 0.0016 30.4 10.6 84 566-658 9-92 (106)
311 TIGR03319 YmdA_YtgF conserved 65.0 3.7E+02 0.008 33.8 22.4 37 680-717 214-250 (514)
312 PF15397 DUF4618: Domain of un 65.0 2.7E+02 0.0058 32.2 18.5 29 564-592 195-223 (258)
313 PF01637 Arch_ATPase: Archaeal 64.9 2.3 5.1E-05 44.7 0.3 29 208-236 9-37 (234)
314 PRK12704 phosphodiesterase; Pr 64.9 3.7E+02 0.0081 33.9 21.7 16 680-695 220-235 (520)
315 TIGR03185 DNA_S_dndD DNA sulfu 64.9 1.8E+02 0.0039 37.3 16.8 16 221-236 30-45 (650)
316 PRK11281 hypothetical protein; 64.7 2.6E+02 0.0057 38.4 18.7 21 633-653 232-252 (1113)
317 TIGR03015 pepcterm_ATPase puta 64.6 4.1 8.9E-05 44.8 2.2 22 215-236 39-60 (269)
318 PF06637 PV-1: PV-1 protein (P 64.4 2.5E+02 0.0053 34.1 16.2 49 471-519 282-330 (442)
319 PRK00106 hypothetical protein; 64.4 3.9E+02 0.0085 33.9 22.1 53 737-800 270-325 (535)
320 KOG1899 LAR transmembrane tyro 64.1 2.6E+02 0.0055 35.9 16.8 13 874-886 489-501 (861)
321 KOG0982 Centrosomal protein Nu 63.9 3.5E+02 0.0077 33.3 19.0 46 548-593 339-384 (502)
322 cd01129 PulE-GspE PulE/GspE Th 63.6 3.6 7.7E-05 46.5 1.5 28 210-237 71-98 (264)
323 PRK11519 tyrosine kinase; Prov 63.3 4.5E+02 0.0097 34.3 21.1 24 427-450 226-249 (719)
324 PF04102 SlyX: SlyX; InterPro 63.2 36 0.00078 31.3 7.6 49 547-595 3-51 (69)
325 PF06309 Torsin: Torsin; Inte 63.1 4 8.6E-05 41.9 1.5 55 192-256 26-80 (127)
326 PF11932 DUF3450: Protein of u 63.1 98 0.0021 34.8 12.6 9 724-732 195-203 (251)
327 PRK00106 hypothetical protein; 62.8 4.1E+02 0.009 33.7 22.2 37 680-717 235-271 (535)
328 PF06705 SF-assemblin: SF-asse 62.2 2.7E+02 0.0058 31.3 23.5 158 485-657 31-190 (247)
329 PF15066 CAGE1: Cancer-associa 62.1 4E+02 0.0086 33.2 17.7 19 571-589 448-466 (527)
330 TIGR01000 bacteriocin_acc bact 62.0 3.7E+02 0.008 32.9 21.8 27 632-658 288-314 (457)
331 PF01695 IstB_IS21: IstB-like 62.0 4.8 0.0001 42.9 2.0 18 221-238 49-66 (178)
332 PF07106 TBPIP: Tat binding pr 61.6 1.1E+02 0.0023 32.4 11.9 58 58-115 74-136 (169)
333 KOG4593 Mitotic checkpoint pro 61.5 4.8E+02 0.01 34.0 22.5 46 1100-1149 599-645 (716)
334 PF13207 AAA_17: AAA domain; P 61.4 3.7 8E-05 39.6 0.9 16 221-236 1-16 (121)
335 COG4477 EzrA Negative regulato 61.3 3.8E+02 0.0082 33.9 17.6 24 538-561 313-336 (570)
336 TIGR02680 conserved hypothetic 61.3 4.1E+02 0.0089 37.3 20.2 27 635-661 368-394 (1353)
337 PF13479 AAA_24: AAA domain 61.2 4 8.7E-05 44.4 1.3 20 219-238 3-22 (213)
338 TIGR02782 TrbB_P P-type conjug 61.0 13 0.00027 43.0 5.3 29 208-237 122-150 (299)
339 TIGR00635 ruvB Holliday juncti 60.9 3.8 8.2E-05 46.3 1.1 41 197-237 6-48 (305)
340 PF05557 MAD: Mitotic checkpoi 60.6 27 0.00058 45.1 8.6 82 563-661 504-585 (722)
341 PF00448 SRP54: SRP54-type pro 60.4 3.6 7.9E-05 44.5 0.8 17 221-237 3-19 (196)
342 PF14197 Cep57_CLD_2: Centroso 60.1 1E+02 0.0022 28.6 9.9 22 572-593 43-64 (69)
343 PF08826 DMPK_coil: DMPK coile 60.1 1.1E+02 0.0023 28.0 9.8 33 557-589 27-59 (61)
344 PF03148 Tektin: Tektin family 60.0 3.8E+02 0.0082 32.3 17.7 38 111-148 59-96 (384)
345 TIGR03017 EpsF chain length de 60.0 3.8E+02 0.0082 32.3 20.1 26 425-450 128-153 (444)
346 COG4026 Uncharacterized protei 59.9 79 0.0017 35.5 10.6 43 742-784 227-271 (290)
347 PRK13833 conjugal transfer pro 59.6 13 0.00029 43.5 5.2 29 208-237 134-162 (323)
348 KOG2543 Origin recognition com 59.6 4.5 9.7E-05 48.3 1.4 40 220-280 31-70 (438)
349 PRK01156 chromosome segregatio 59.5 5.5E+02 0.012 34.1 23.8 12 1117-1128 826-837 (895)
350 PLN03137 ATP-dependent DNA hel 59.4 38 0.00082 45.9 9.7 27 208-236 466-492 (1195)
351 PF14992 TMCO5: TMCO5 family 59.2 1.1E+02 0.0023 35.7 12.0 37 781-817 231-269 (280)
352 KOG4364 Chromatin assembly fac 59.1 1.9E+02 0.0041 37.2 14.7 28 636-663 360-387 (811)
353 PF06120 Phage_HK97_TLTM: Tail 59.0 3.6E+02 0.0079 31.8 16.4 82 424-507 22-107 (301)
354 PF15397 DUF4618: Domain of un 59.0 3.4E+02 0.0073 31.4 19.8 9 653-661 164-172 (258)
355 PF09787 Golgin_A5: Golgin sub 58.9 3.6E+02 0.0078 33.7 17.5 16 577-592 363-378 (511)
356 KOG4438 Centromere-associated 58.7 4.3E+02 0.0094 32.6 19.7 30 488-517 173-202 (446)
357 PF05700 BCAS2: Breast carcino 58.4 1.2E+02 0.0025 33.8 12.0 38 552-589 179-216 (221)
358 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.3 2.2E+02 0.0048 29.1 18.7 19 573-591 102-120 (132)
359 PF05622 HOOK: HOOK protein; 58.3 2.9 6.3E-05 53.5 -0.5 32 626-658 317-348 (713)
360 KOG4572 Predicted DNA-binding 58.1 5E+02 0.011 34.4 18.0 23 639-661 1089-1111(1424)
361 PRK04406 hypothetical protein; 58.1 60 0.0013 30.6 8.2 50 546-595 9-58 (75)
362 PF06160 EzrA: Septation ring 58.0 4.9E+02 0.011 33.0 19.6 38 1079-1116 450-488 (560)
363 PF13604 AAA_30: AAA domain; P 58.0 4.3 9.3E-05 43.7 0.8 27 211-237 10-36 (196)
364 KOG4603 TBP-1 interacting prot 57.8 1.3E+02 0.0028 32.7 11.4 35 57-91 80-114 (201)
365 PF13086 AAA_11: AAA domain; P 57.6 5.9 0.00013 41.7 1.8 26 211-237 10-35 (236)
366 PF15290 Syntaphilin: Golgi-lo 57.5 2.5E+02 0.0053 32.8 14.2 31 477-507 71-101 (305)
367 PF09304 Cortex-I_coil: Cortex 57.4 1.3E+02 0.0028 30.4 10.7 26 567-592 49-74 (107)
368 PRK09183 transposase/IS protei 57.2 5.9 0.00013 44.6 1.8 20 216-237 101-120 (259)
369 PTZ00361 26 proteosome regulat 57.2 45 0.00098 40.8 9.3 16 221-236 219-234 (438)
370 PF09738 DUF2051: Double stran 56.7 3.9E+02 0.0085 31.5 19.6 23 629-651 220-242 (302)
371 PRK12705 hypothetical protein; 56.7 5.1E+02 0.011 32.7 21.5 16 680-695 208-223 (508)
372 KOG4593 Mitotic checkpoint pro 56.5 5.8E+02 0.012 33.3 22.7 19 643-661 300-318 (716)
373 PRK10929 putative mechanosensi 56.3 7.2E+02 0.016 34.4 24.0 18 482-499 216-233 (1109)
374 TIGR02231 conserved hypothetic 56.2 1.3E+02 0.0028 37.5 13.1 30 482-511 72-101 (525)
375 PF13094 CENP-Q: CENP-Q, a CEN 56.2 2.5E+02 0.0053 29.5 13.4 69 451-519 1-72 (160)
376 PF00004 AAA: ATPase family as 56.1 5 0.00011 38.7 0.8 15 222-236 1-15 (132)
377 PF08702 Fib_alpha: Fibrinogen 56.0 2.7E+02 0.0058 29.4 18.2 24 485-508 33-56 (146)
378 PF07106 TBPIP: Tat binding pr 55.9 1.4E+02 0.003 31.6 11.6 26 485-510 76-101 (169)
379 PLN03229 acetyl-coenzyme A car 55.9 6.1E+02 0.013 33.4 20.2 15 647-661 717-731 (762)
380 smart00806 AIP3 Actin interact 55.7 4.8E+02 0.01 32.2 18.6 95 484-578 220-319 (426)
381 PLN03025 replication factor C 55.6 6.7 0.00015 45.2 1.9 42 189-237 11-52 (319)
382 PF09766 FimP: Fms-interacting 55.5 2.3E+02 0.005 33.9 14.5 30 476-505 21-50 (355)
383 KOG1937 Uncharacterized conser 55.5 3.8E+02 0.0083 33.2 16.0 25 626-650 394-418 (521)
384 TIGR03752 conj_TIGR03752 integ 55.4 1.3E+02 0.0028 37.3 12.4 19 641-659 122-140 (472)
385 TIGR01069 mutS2 MutS2 family p 55.3 1.1E+02 0.0024 40.1 12.9 35 921-955 726-762 (771)
386 PRK00409 recombination and DNA 55.3 1.1E+02 0.0023 40.3 12.7 17 220-236 328-344 (782)
387 PF05384 DegS: Sensor protein 55.1 3E+02 0.0065 29.6 19.7 27 488-514 27-53 (159)
388 PF10211 Ax_dynein_light: Axon 54.8 3.2E+02 0.0069 29.9 21.3 62 531-592 124-186 (189)
389 PRK13729 conjugal transfer pil 54.8 41 0.0009 41.4 8.3 46 547-592 75-120 (475)
390 TIGR01069 mutS2 MutS2 family p 54.7 2.8E+02 0.0062 36.5 16.3 17 220-236 323-339 (771)
391 PF03148 Tektin: Tektin family 54.7 4.6E+02 0.01 31.7 21.8 45 550-594 246-290 (384)
392 PRK12723 flagellar biosynthesi 54.3 9.4 0.0002 45.8 2.9 18 219-236 174-191 (388)
393 PF15035 Rootletin: Ciliary ro 54.1 2.3E+02 0.005 30.9 13.0 115 480-594 1-127 (182)
394 PRK00295 hypothetical protein; 53.8 79 0.0017 29.2 8.1 48 548-595 5-52 (68)
395 COG4962 CpaF Flp pilus assembl 53.8 6.7 0.00014 46.3 1.5 30 207-237 162-191 (355)
396 KOG2685 Cystoskeletal protein 53.7 5.1E+02 0.011 31.9 18.4 41 623-663 280-320 (421)
397 TIGR02449 conserved hypothetic 53.7 1.2E+02 0.0025 28.2 9.0 48 542-589 15-62 (65)
398 TIGR00631 uvrb excinuclease AB 53.7 9.3 0.0002 48.7 2.9 89 188-281 2-97 (655)
399 PF10481 CENP-F_N: Cenp-F N-te 53.5 4.3E+02 0.0092 30.9 19.7 27 568-594 101-127 (307)
400 PF05010 TACC: Transforming ac 53.0 3.7E+02 0.008 30.1 22.2 22 569-590 118-139 (207)
401 PF10267 Tmemb_cc2: Predicted 52.8 4.6E+02 0.0099 32.1 16.4 20 58-77 6-25 (395)
402 cd01130 VirB11-like_ATPase Typ 52.8 7.2 0.00016 41.4 1.5 30 207-237 14-43 (186)
403 PF05970 PIF1: PIF1-like helic 52.7 8.2 0.00018 45.5 2.1 37 197-236 3-39 (364)
404 PRK10361 DNA recombination pro 52.6 5.7E+02 0.012 32.1 23.9 29 632-660 169-197 (475)
405 TIGR02338 gimC_beta prefoldin, 52.6 1.7E+02 0.0038 28.9 11.0 29 567-595 15-43 (110)
406 PF01580 FtsK_SpoIIIE: FtsK/Sp 51.7 5.7 0.00012 42.4 0.5 17 221-237 40-56 (205)
407 PRK02119 hypothetical protein; 51.6 1E+02 0.0022 28.9 8.5 50 546-595 7-56 (73)
408 COG1222 RPT1 ATP-dependent 26S 51.4 25 0.00055 42.0 5.6 97 138-234 87-200 (406)
409 PF05673 DUF815: Protein of un 51.4 9.5 0.00021 43.3 2.2 71 187-284 23-94 (249)
410 KOG0249 LAR-interacting protei 51.1 4.4E+02 0.0096 34.4 16.1 16 966-981 676-691 (916)
411 PF15450 DUF4631: Domain of un 51.1 6.1E+02 0.013 32.1 19.0 27 51-77 8-34 (531)
412 PF04012 PspA_IM30: PspA/IM30 51.1 3.7E+02 0.008 29.5 23.6 50 549-598 92-141 (221)
413 COG4209 LplB ABC-type polysacc 50.9 5.3 0.00012 45.7 0.1 25 733-759 189-213 (309)
414 PRK13900 type IV secretion sys 50.6 7 0.00015 45.8 1.0 30 207-237 149-178 (332)
415 PF12004 DUF3498: Domain of un 50.5 5.2 0.00011 49.2 0.0 17 143-159 61-77 (495)
416 PF13671 AAA_33: AAA domain; P 50.5 7.4 0.00016 38.5 1.1 16 221-236 1-16 (143)
417 PF08647 BRE1: BRE1 E3 ubiquit 50.4 2.5E+02 0.0055 27.4 12.8 10 581-590 85-94 (96)
418 COG1201 Lhr Lhr-like helicases 50.4 15 0.00032 47.9 4.0 36 210-256 30-65 (814)
419 KOG4302 Microtubule-associated 50.3 3.3E+02 0.0072 35.3 15.3 29 633-661 224-252 (660)
420 PRK04325 hypothetical protein; 50.1 1E+02 0.0022 28.9 8.3 49 547-595 8-56 (74)
421 PRK02793 phi X174 lysis protei 50.1 96 0.0021 28.9 8.1 49 547-595 7-55 (72)
422 smart00487 DEXDc DEAD-like hel 50.0 9.4 0.0002 38.4 1.8 17 221-237 26-42 (201)
423 PTZ00424 helicase 45; Provisio 49.9 8.5 0.00018 45.0 1.6 26 209-236 57-82 (401)
424 PRK13342 recombination factor 49.8 8.6 0.00019 46.0 1.7 38 200-237 17-54 (413)
425 TIGR03499 FlhF flagellar biosy 49.6 7.3 0.00016 44.4 1.0 17 221-237 196-212 (282)
426 KOG0926 DEAH-box RNA helicase 49.5 10 0.00022 48.9 2.2 81 916-1016 1088-1168(1172)
427 PHA02544 44 clamp loader, smal 49.5 8.9 0.00019 43.5 1.7 22 216-237 39-61 (316)
428 PRK13851 type IV secretion sys 49.4 6.9 0.00015 46.2 0.7 30 207-237 151-180 (344)
429 PRK13341 recombination factor 49.3 9.6 0.00021 49.2 2.0 45 189-237 26-70 (725)
430 KOG2010 Double stranded RNA bi 49.3 89 0.0019 36.8 9.3 65 529-593 135-199 (405)
431 TIGR01005 eps_transp_fam exopo 49.2 2E+02 0.0043 37.4 13.7 9 939-947 653-661 (754)
432 cd00268 DEADc DEAD-box helicas 49.1 10 0.00022 39.8 2.0 25 210-236 29-53 (203)
433 PRK00736 hypothetical protein; 49.0 1E+02 0.0023 28.4 8.1 48 548-595 5-52 (68)
434 PRK10869 recombination and rep 48.9 3.3E+02 0.0071 34.5 15.1 18 216-236 22-39 (553)
435 PRK11776 ATP-dependent RNA hel 48.8 9.7 0.00021 45.9 1.9 26 209-236 33-58 (460)
436 KOG0962 DNA repair protein RAD 48.8 5.4E+02 0.012 35.9 17.4 20 912-942 1185-1204(1294)
437 PRK06547 hypothetical protein; 48.6 12 0.00027 39.7 2.4 28 209-236 5-32 (172)
438 PF07889 DUF1664: Protein of u 48.3 3.4E+02 0.0073 28.2 12.5 25 566-590 93-117 (126)
439 PF02994 Transposase_22: L1 tr 47.9 50 0.0011 39.5 7.5 37 557-593 146-182 (370)
440 TIGR03819 heli_sec_ATPase heli 47.6 14 0.0003 43.6 2.8 30 207-237 167-196 (340)
441 PRK09343 prefoldin subunit bet 47.4 2.7E+02 0.0058 28.4 11.5 27 568-594 20-46 (121)
442 PF07111 HCR: Alpha helical co 47.2 7.9E+02 0.017 32.2 24.2 23 637-659 641-663 (739)
443 KOG1899 LAR transmembrane tyro 46.9 7.7E+02 0.017 32.0 17.8 28 482-509 133-160 (861)
444 PRK04195 replication factor C 46.8 12 0.00026 45.8 2.2 37 200-236 19-56 (482)
445 PF13238 AAA_18: AAA domain; P 46.2 8.5 0.00018 36.9 0.7 15 222-236 1-15 (129)
446 KOG0962 DNA repair protein RAD 46.1 1E+03 0.022 33.5 19.2 25 570-594 879-903 (1294)
447 PF06414 Zeta_toxin: Zeta toxi 46.1 10 0.00022 40.6 1.3 20 217-236 13-32 (199)
448 TIGR03545 conserved hypothetic 46.0 1.8E+02 0.0038 37.0 12.1 30 632-661 241-270 (555)
449 PRK03947 prefoldin subunit alp 45.8 3.5E+02 0.0075 27.7 14.4 17 488-504 13-29 (140)
450 PF02841 GBP_C: Guanylate-bind 45.7 5.4E+02 0.012 29.8 15.9 17 578-594 279-295 (297)
451 PLN02939 transferase, transfer 45.6 9.7E+02 0.021 32.8 18.9 46 553-598 298-346 (977)
452 TIGR02231 conserved hypothetic 45.4 2.2E+02 0.0047 35.5 12.7 28 487-514 70-97 (525)
453 TIGR01000 bacteriocin_acc bact 45.4 6.6E+02 0.014 30.8 21.6 20 573-592 240-259 (457)
454 PF00910 RNA_helicase: RNA hel 45.3 7.5 0.00016 37.7 0.2 15 222-236 1-15 (107)
455 TIGR02977 phageshock_pspA phag 45.2 4.7E+02 0.01 29.0 22.4 42 548-589 99-140 (219)
456 PRK11192 ATP-dependent RNA hel 45.1 12 0.00025 44.8 1.8 26 209-236 30-55 (434)
457 PF10046 BLOC1_2: Biogenesis o 45.1 2.3E+02 0.0051 27.7 10.4 64 62-126 34-97 (99)
458 PF00063 Myosin_head: Myosin h 45.1 11 0.00024 48.1 1.6 34 203-236 68-102 (689)
459 PF05496 RuvB_N: Holliday junc 45.1 19 0.00041 40.6 3.2 43 194-236 23-67 (233)
460 TIGR03017 EpsF chain length de 45.0 3.5E+02 0.0076 32.5 14.1 12 756-767 395-406 (444)
461 PF02562 PhoH: PhoH-like prote 45.0 12 0.00026 41.2 1.7 19 218-236 18-36 (205)
462 COG0419 SbcC ATPase involved i 44.7 9.3E+02 0.02 32.3 22.7 35 219-255 25-66 (908)
463 PF03962 Mnd1: Mnd1 family; I 44.6 4.6E+02 0.0099 28.7 15.0 31 564-594 137-167 (188)
464 PF00580 UvrD-helicase: UvrD/R 44.5 7.5 0.00016 43.1 0.0 29 218-255 12-40 (315)
465 PRK00080 ruvB Holliday junctio 44.3 12 0.00025 43.4 1.5 39 199-237 29-69 (328)
466 PF04949 Transcrip_act: Transc 44.2 2.2E+02 0.0049 30.3 10.4 89 54-142 43-138 (159)
467 PRK04837 ATP-dependent RNA hel 44.0 12 0.00027 44.5 1.7 26 209-236 37-62 (423)
468 PF07724 AAA_2: AAA domain (Cd 44.0 11 0.00025 39.9 1.3 17 220-236 4-20 (171)
469 TIGR00348 hsdR type I site-spe 43.9 14 0.0003 47.3 2.2 30 207-237 247-281 (667)
470 PTZ00121 MAEBL; Provisional 43.8 1.1E+03 0.024 33.6 18.7 17 930-946 1974-1990(2084)
471 KOG0989 Replication factor C, 43.7 16 0.00034 42.9 2.4 17 221-237 59-75 (346)
472 PRK13764 ATPase; Provisional 43.6 10 0.00022 47.9 1.0 19 219-237 257-275 (602)
473 COG1842 PspA Phage shock prote 43.6 5.3E+02 0.012 29.2 19.0 53 547-599 91-143 (225)
474 PF07728 AAA_5: AAA domain (dy 43.2 9.6 0.00021 37.9 0.6 15 222-236 2-16 (139)
475 PF05911 DUF869: Plant protein 43.2 9.5E+02 0.021 32.0 22.3 27 564-590 122-148 (769)
476 PRK03947 prefoldin subunit alp 43.1 3.8E+02 0.0083 27.4 13.9 26 481-506 13-38 (140)
477 PF03215 Rad17: Rad17 cell cyc 43.1 13 0.00028 46.2 1.8 31 206-236 30-62 (519)
478 TIGR02894 DNA_bind_RsfA transc 43.1 3.2E+02 0.007 29.5 11.6 21 637-657 127-147 (161)
479 COG3074 Uncharacterized protei 42.8 3E+02 0.0065 26.0 10.6 67 497-588 6-72 (79)
480 KOG3850 Predicted membrane pro 42.5 7.2E+02 0.016 30.4 16.6 121 511-657 262-382 (455)
481 PRK00846 hypothetical protein; 42.4 2.2E+02 0.0047 27.3 9.2 51 546-596 11-61 (77)
482 COG0419 SbcC ATPase involved i 42.0 1E+03 0.022 32.0 22.6 8 230-237 81-88 (908)
483 PF00769 ERM: Ezrin/radixin/mo 41.9 5.7E+02 0.012 29.1 15.8 64 531-594 65-128 (246)
484 PRK10590 ATP-dependent RNA hel 41.7 15 0.00033 44.4 2.0 26 209-236 30-55 (456)
485 PRK00440 rfc replication facto 41.6 14 0.00029 41.7 1.5 34 200-236 22-55 (319)
486 cd00632 Prefoldin_beta Prefold 41.5 3.5E+02 0.0076 26.5 13.3 28 567-594 75-102 (105)
487 PRK14722 flhF flagellar biosyn 41.3 12 0.00026 44.7 1.1 19 219-237 137-155 (374)
488 PF04642 DUF601: Protein of un 41.2 6.2E+02 0.014 29.3 14.4 37 426-462 102-145 (311)
489 PF05010 TACC: Transforming ac 41.1 5.6E+02 0.012 28.7 22.1 24 632-655 179-202 (207)
490 PF09744 Jnk-SapK_ap_N: JNK_SA 41.1 4.8E+02 0.011 28.0 14.6 107 481-587 50-156 (158)
491 cd00124 MYSc Myosin motor doma 41.0 54 0.0012 42.2 6.8 35 202-236 68-103 (679)
492 COG2256 MGS1 ATPase related to 41.0 15 0.00031 44.4 1.7 43 189-235 22-64 (436)
493 PF05700 BCAS2: Breast carcino 40.8 5.5E+02 0.012 28.6 18.5 37 557-593 177-213 (221)
494 PF14915 CCDC144C: CCDC144C pr 40.7 6.8E+02 0.015 29.6 22.9 25 482-506 57-81 (305)
495 PF12761 End3: Actin cytoskele 40.4 2.2E+02 0.0047 31.6 10.2 88 489-576 97-195 (195)
496 PF08172 CASP_C: CASP C termin 40.3 2E+02 0.0043 32.9 10.3 104 483-586 1-131 (248)
497 PF15035 Rootletin: Ciliary ro 40.3 5.3E+02 0.012 28.2 16.3 114 476-592 62-175 (182)
498 TIGR01241 FtsH_fam ATP-depende 40.3 10 0.00023 46.4 0.4 53 184-236 48-105 (495)
499 PF08172 CASP_C: CASP C termin 40.2 1.7E+02 0.0037 33.4 9.8 99 490-588 1-126 (248)
500 KOG2264 Exostosin EXT1L [Signa 40.1 1.6E+02 0.0034 37.2 9.9 74 530-603 82-155 (907)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.5e-82 Score=761.10 Aligned_cols=395 Identities=38% Similarity=0.562 Sum_probs=334.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcChhHHHHhhhhhhccc
Q 001007 62 STKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLT 141 (1191)
Q Consensus 62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~~e~e~r~~~~~~eRrkLhN~l~e 141 (1191)
.+++..|++++..++..+.+++.++..++..+.. .+.........|......+.+.+ .+..+||+|||++++
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQE-------ALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3345555555555555555555555554443322 22222222334444444455555 667889999999999
Q ss_pred CCCCEEEEEeeCCCCCCCCC---c-eEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCC
Q 001007 142 AKGNIKVFCRTRPLFEDEGP---S-VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG 217 (1191)
Q Consensus 142 lkGnIRV~~RVRPl~~~E~~---s-vV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdG 217 (1191)
+||||||||||||+++++.. . ++..++...+.+..+....+...+.|.||+||+|.++|++||.++.|+|++||||
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDG 391 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDG 391 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988754 2 3344444456776665554444557999999999999999999999999999999
Q ss_pred ccEEEEeeccCCCCccccccc-CCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC-CCceEE
Q 001007 218 YNVSIFAYGQTHSGKTHTMEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKI 295 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~G-s~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~-~~~~~i 295 (1191)
||+||||||||||||||||.| +++++|||||++++||..+..... +|.|.+.++|+|||||.|+|||++.. .....|
T Consensus 392 YnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I 470 (670)
T KOG0239|consen 392 YNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEI 470 (670)
T ss_pred cceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeE
Confidence 999999999999999999999 689999999999999999987766 99999999999999999999998874 444445
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCC
Q 001007 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1191)
Q Consensus 296 ~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS 369 (1191)
..+. ...+.+++...|.+.+++..+++.|..+|+++.|. |||||+||+|+|...+..++..+.++|+|||||||
T Consensus 471 ~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGS 550 (670)
T KOG0239|consen 471 VDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGS 550 (670)
T ss_pred EEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccC
Confidence 4433 45688999999999999999999999999999885 89999999999999999999999999999999999
Q ss_pred ccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001007 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1191)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsT 449 (1191)
||+++++++|+|++|+++||+||++||+||.||+.+..||||||||||+||||+|||++||+|||+|||...++.||+++
T Consensus 551 ER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~s 630 (670)
T KOG0239|consen 551 ERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCS 630 (670)
T ss_pred cccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccCc
Q 001007 450 LNFSSRARSTVLSLGN 465 (1191)
Q Consensus 450 LrFAsRAr~I~~~~~n 465 (1191)
|+||+|++.+.+++..
T Consensus 631 L~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 631 LRFATRVRSVELGSAR 646 (670)
T ss_pred cchHHHhhceeccccc
Confidence 9999999999877544
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-80 Score=745.91 Aligned_cols=350 Identities=33% Similarity=0.492 Sum_probs=295.7
Q ss_pred cCCCCEEEEEeeCCCCCCCC----CceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001007 141 TAKGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E~----~svV~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~sv 214 (1191)
+..-||+|+|||||+++.|. +.+|.+++ ...|.|.....+. .-.++|+||+||||.+.|.+||+. |+|+|..|
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccc-cccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 45569999999999998873 45677776 4557777652221 146899999999999999999997 69999999
Q ss_pred cCCccEEEEeeccCCCCccccccc--------CCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTMEG--------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~G--------s~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~ 286 (1191)
+.|||||||||||||+||||||+| .+.+.|||||++.+||+.+.. .+.+|.|+|||+|+|||.++|||+
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEEl~DLLa 201 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEELTDLLA 201 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHHHHHhcC
Confidence 999999999999999999999999 467899999999999998864 347999999999999999999998
Q ss_pred CCCCC--ceEEEec-------ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeec-c
Q 001007 287 QTGNG--LAKIRLQ-------SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-I 352 (1191)
Q Consensus 287 ~~~~~--~~~i~~~-------~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~-~ 352 (1191)
+.... ...+..+ .+..+.|+.+..|+++.++..+|..|...|.++.|. |||||+||+|+|..... .
T Consensus 202 ~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~ 281 (1041)
T KOG0243|consen 202 SEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP 281 (1041)
T ss_pred CccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC
Confidence 87653 2211111 123456899999999999999999999999999884 99999999999976543 3
Q ss_pred CCc--eeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcce
Q 001007 353 TGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1191)
Q Consensus 353 tg~--~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKT 430 (1191)
.|+ ...|||+||||||||..+++|+.+.|.+|++.||+||.+||+||+||.++.+|||||+|||||||||||||.+||
T Consensus 282 ~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT 361 (1041)
T KOG0243|consen 282 EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKT 361 (1041)
T ss_pred cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCcee
Confidence 333 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAND 509 (1191)
Q Consensus 431 lMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~ 509 (1191)
+||+||||+..+++||++||.||.||++|+++|.....+. +...+++|-.||++|+..+.++.+
T Consensus 362 ~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~---------------K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 362 CIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLM---------------KKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHH---------------HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999998876544332 234455666666666666655443
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-78 Score=704.90 Aligned_cols=348 Identities=34% Similarity=0.508 Sum_probs=293.6
Q ss_pred CCCCEEEEEeeCCCCCCCCC----ceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhc
Q 001007 142 AKGNIKVFCRTRPLFEDEGP----SVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 215 (1191)
Q Consensus 142 lkGnIRV~~RVRPl~~~E~~----svV~~~-d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svL 215 (1191)
...+|+|++|+||+...+.. .++.++ ....+.+..+.......++.|+||.||+++++|++||+.+ .|+|++|+
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 34689999999999875521 233333 3345566666655666778999999999999999999986 89999999
Q ss_pred CCccEEEEeeccCCCCcccccccC-CCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceE
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEGS-SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs-~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 294 (1191)
+|||+||||||||||||||||.|+ ++..|||||++++||..|+.... ...|.|+|||+|||||.|+|||++.+.....
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~-~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~ 161 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE-KTRFLVRVSYLEIYNESIRDLLSPVNPKGLE 161 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc-cceEEEEeehHHHHhHHHHHHhCccCcCCce
Confidence 999999999999999999999998 67799999999999999986543 3389999999999999999999998765555
Q ss_pred EEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeec-cCC--ceeeeeeeEEe
Q 001007 295 IRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITG--ENLYSKLSLVD 365 (1191)
Q Consensus 295 i~~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~-~tg--~~~~SkL~LVD 365 (1191)
++.. .+.++.+++...|.+++++..+|..|..+|.++.|. |||||+||+|+|++... ..+ ....|+|+|||
T Consensus 162 lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvD 241 (574)
T KOG4280|consen 162 LREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVD 241 (574)
T ss_pred eeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeee
Confidence 5544 345677999999999999999999999999999875 99999999999998332 222 34579999999
Q ss_pred cCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCC-cccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001007 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1191)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~-hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~e 444 (1191)
||||||..+++++|+|++|+.+||+||++||+||.+|++++. ||||||||||+||||||||||+|+||+||+|...+++
T Consensus 242 LagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ 321 (574)
T KOG4280|consen 242 LAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYE 321 (574)
T ss_pred ccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhH
Confidence 999999999999999999999999999999999999999776 9999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 445 ETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKE 506 (1191)
Q Consensus 445 ETLsTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~ 506 (1191)
||++||+||+||+.|.+.+.-+.. ..+..+..|+.||..|+.++..
T Consensus 322 ETlsTLrfA~Rak~I~nk~~ined----------------~~~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 322 ETLSTLRFAQRAKAIKNKPVINED----------------PKDALLRELQEEIERLKKELDP 367 (574)
T ss_pred HHHHHHHHHHHHHHhhccccccCC----------------cchhhHHHHHHHHHHHHHhhcc
Confidence 999999999999998765432111 1134555666666666665543
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-77 Score=711.53 Aligned_cols=344 Identities=32% Similarity=0.511 Sum_probs=298.1
Q ss_pred CCEEEEEeeCCCCCCCC---Cc-eEeecCCcEEEEecCCCccCCCCceeecceeeCCC-------CChhhHHhch-HHhH
Q 001007 144 GNIKVFCRTRPLFEDEG---PS-VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH-------VGQAELFSDV-QPFV 211 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~---~s-vV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~-------asQeeVFeeV-~PLV 211 (1191)
.+|+|.||||||+..|. .. +|.+.++ ++.+..+..+ .....|+||++||.. ++|..||+++ .|++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn-~ttii~~~~~--k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGN-TTTIINPKGS--KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCC-ceeeecCCCc--ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 58999999999998873 23 4454444 4444433322 223459999999877 4799999998 8999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCC--CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC-CC
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP-QT 288 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~--~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~-~~ 288 (1191)
+.+|+|||+||||||||||||||||+|-. +++|||||++++||..+.........|.|.|||+|||||+|+|||+ +.
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 99999999999999999999999999976 8999999999999999988888889999999999999999999999 77
Q ss_pred CCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc--CC--ceee
Q 001007 289 GNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLY 358 (1191)
Q Consensus 289 ~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~--tg--~~~~ 358 (1191)
..+..+++... +.+|.+|+...|+|+.++..++..|.+.|++++|+ |||||+||+|.+.+.... ++ ...+
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 77777777654 56788999999999999999999999999999986 999999999999887542 22 4578
Q ss_pred eeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc-------CCCcccCCCCccccccccccCCCcceE
Q 001007 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-------RKDIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 359 SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~-------kk~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
|||+|||||||||++.+|++|+|+|||.+|||||.+||.||+||++ +..+||||||.||+||+++|||||||+
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 9999999999999999999999999999999999999999999985 235999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHhhcccccC-cchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRARSTVLSLG-NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~-n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
||++|||.+-||+|||+|||||.|||+|++... |.+ .-.+.|.+|++|+.+||..+...
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEd-----------------pnaKLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNED-----------------PNAKLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCC-----------------ccHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999876432 222 33567888899999888887543
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.6e-75 Score=670.16 Aligned_cols=444 Identities=29% Similarity=0.413 Sum_probs=332.8
Q ss_pred CCCCEEEEEeeCCCCCCCC----CceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001007 142 AKGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1191)
Q Consensus 142 lkGnIRV~~RVRPl~~~E~----~svV~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svL 215 (1191)
.-++|+|+||+||.+..|. ..+..+.. ..++.+...+. .+.|.||+||.|+++|++||+. +.|+|++||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~-----~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE-----TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc-----cccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 4589999999999987652 22333333 55666554332 2899999999999999999998 589999999
Q ss_pred CCccEEEEeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 292 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs~~---~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~ 292 (1191)
.|||+||||||||||||||||.|... ..||+||++++||+.|... ..+.+|.|+|||||||+|+|+|||++.+.+.
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~-~~n~efhVkVsy~EIYmEKi~DLL~~~k~nl 158 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSM-EENLEFHVKVSYFEIYMEKIRDLLDPEKTNL 158 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcC-cccceEEEEEEeehhhhhHHHHHhCcccCCc
Confidence 99999999999999999999999766 5699999999999999764 3468999999999999999999999877665
Q ss_pred eEEEecc-cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecC
Q 001007 293 AKIRLQS-LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 367 (1191)
Q Consensus 293 ~~i~~~~-~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLA 367 (1191)
...+... ..++.|++...|.+++++++++..|..+|+++.|+ |||||+||+|+|++.+..+.....|+|.|||||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLa 238 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLA 238 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcc
Confidence 4433322 34678999999999999999999999999988775 999999999999999999999999999999999
Q ss_pred CCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHH
Q 001007 368 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 446 (1191)
Q Consensus 368 GSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k-k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eET 446 (1191)
|||+++++|+.|..+.|+.+||+||++||+||++|+.+ +.|||||||||||||||+|||||+|.+|+|++|+..+..||
T Consensus 239 GSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET 318 (607)
T KOG0240|consen 239 GSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAET 318 (607)
T ss_pred cccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999997 89999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-
Q 001007 447 LSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL--KEANDQCVLLYNEVQKAWK- 523 (1191)
Q Consensus 447 LsTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L--~~~~~q~~~l~qElqk~~k- 523 (1191)
.+||+|++||+.|++.+.-+.. ........++.++.+....++..++.+...|+.-- ......+....++.++...
T Consensus 319 ~STl~fg~rak~ikN~v~~n~e-~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~ 397 (607)
T KOG0240|consen 319 KSTLRFGNRAKTIKNTVWVNLE-LTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAI 397 (607)
T ss_pred ccchhhccccccccchhhhhhH-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhh
Confidence 9999999999998765433222 22233334444444444455555555444444110 0011111111111111110
Q ss_pred ---hHHHHHHh---hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 524 ---VSFTLQSD---LKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 524 ---~~~eLq~d---L~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
....++.. .......+.+....+..+.++...++.+..++.++++.++.+.++....-++....+..++
T Consensus 398 ~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~ 472 (607)
T KOG0240|consen 398 LSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQEL 472 (607)
T ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 01111111 1233334444455555555555555655556666666666665555544444444444433
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.9e-73 Score=643.48 Aligned_cols=313 Identities=32% Similarity=0.545 Sum_probs=279.6
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCc--------cCCCCceeecceeeCCCCChhhHHhch-HHhH
Q 001007 145 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT--------ISNPKKDFEFDRVYGPHVGQAELFSDV-QPFV 211 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~--------~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV 211 (1191)
||+|||||||+.+.| ...++.+.++..+.+.+.... .....+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 799999999999765 346788888877766654321 123468999999999999999999986 7999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCC
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~ 291 (1191)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ..+.|.|++||+|||||+|+|||++....
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999987543 46889999999999999999999886433
Q ss_pred ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc---CCceeeeeee
Q 001007 292 LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLS 362 (1191)
Q Consensus 292 ~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~---tg~~~~SkL~ 362 (1191)
..++.+. ...+.++++..|.+.++++++++.|..+|..+.|. |||||+||+|+|.+.+.. ......|+|+
T Consensus 160 -l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 160 -LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred -ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 3444443 34567899999999999999999999999988774 899999999999988765 4556789999
Q ss_pred EEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCcceEEEEEeCCC
Q 001007 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPN 439 (1191)
Q Consensus 363 LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk---~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs 439 (1191)
|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||.
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhHHHHHHhhc
Q 001007 440 AANMSETLSSLNFSSRARST 459 (1191)
Q Consensus 440 ~~~~eETLsTLrFAsRAr~I 459 (1191)
..+++||++||+||+||++|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999875
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3e-73 Score=693.81 Aligned_cols=342 Identities=30% Similarity=0.470 Sum_probs=289.1
Q ss_pred CCCEEEEEeeCCCCCCCC-CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCccE
Q 001007 143 KGNIKVFCRTRPLFEDEG-PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E~-~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdGyN~ 220 (1191)
.++|+|||||||+++.|. ..++...+++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 97 ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred CCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 579999999999987763 334444555555543 37899999999999999999986 8999999999999
Q ss_pred EEEeeccCCCCcccccccCC----------CCCChHHHHHHHHHHhhccC----cccccccceeEEEEEEechhhhcccC
Q 001007 221 SIFAYGQTHSGKTHTMEGSS----------HDRGLYARCFEELFDLSNSD----TTATARFNFAVTVFELYNEQLRELLP 286 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~----------~~~GIIPRale~LF~~i~~~----~~~~~~f~V~VS~lEIYNE~V~DLL~ 286 (1191)
||||||||||||||||+|+. .++|||||++++||..+... ......|.|+|||+|||||+|+|||+
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 99999999999999999963 56899999999999987642 22456899999999999999999998
Q ss_pred CCCCCceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc--CC--ce
Q 001007 287 QTGNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--EN 356 (1191)
Q Consensus 287 ~~~~~~~~i~~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~--tg--~~ 356 (1191)
+.... ..++.+ ....+.+++++.|.+.+++..+|..|..+|.++.|. |||||+||+|+|...... .+ ..
T Consensus 248 p~~k~-L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 248 PSQKN-LQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred cccCC-ceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 76544 334433 334677999999999999999999999999988875 999999999999875432 22 24
Q ss_pred eeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc-----CCCcccCCCCccccccccccCCCcceE
Q 001007 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-----RKDIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 357 ~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~-----kk~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 579999999999999999999999999999999999999999999975 457999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
|||||||...+++||++||+||+||+.|++.+..+... ...+..+.+.|.+|++|+.+|+...
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~----------~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVM----------QDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccch----------hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998765432211 1122345678888888888888764
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.2e-72 Score=634.73 Aligned_cols=309 Identities=36% Similarity=0.492 Sum_probs=268.7
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCc
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdGy 218 (1191)
+||+|||||||+.+.|. ..++...++.++.+... +.+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 48999999999988763 34555555555555432 248999999999999999999986 89999999999
Q ss_pred cEEEEeeccCCCCcccccccCC--------CCCChHHHHHHHHHHhhccC---cccccccceeEEEEEEechhhhcccCC
Q 001007 219 NVSIFAYGQTHSGKTHTMEGSS--------HDRGLYARCFEELFDLSNSD---TTATARFNFAVTVFELYNEQLRELLPQ 287 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~Gs~--------~~~GIIPRale~LF~~i~~~---~~~~~~f~V~VS~lEIYNE~V~DLL~~ 287 (1191)
|+||||||||||||||||+|+. .++|||||++++||..+... ......|.|++||+|||||+|+|||++
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 9999999999999999999975 36899999999999987643 124568999999999999999999987
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCC--ceeee
Q 001007 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG--ENLYS 359 (1191)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg--~~~~S 359 (1191)
..... .++.+. ...+.++++..|.+.+++.+++..|..+|..+.|+ |||||+||+|+|...+...+ ....|
T Consensus 155 ~~~~l-~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 155 TSRNL-KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred CCCCc-eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 65443 344332 34567999999999999999999999999988764 89999999999987664433 34579
Q ss_pred eeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc----CCCcccCCCCccccccccccCCCcceEEEEE
Q 001007 360 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS----RKDIVPYENSMLTKVLADSLGESSKTLMIVN 435 (1191)
Q Consensus 360 kL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~----kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ 435 (1191)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+||+|
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999974 4689999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHhHHHHHHhhc
Q 001007 436 ICPNAANMSETLSSLNFSSRARST 459 (1191)
Q Consensus 436 ISPs~~~~eETLsTLrFAsRAr~I 459 (1191)
|||+..+++||++||+||+||+.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999875
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.6e-71 Score=629.62 Aligned_cols=307 Identities=31% Similarity=0.493 Sum_probs=273.7
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCcc--------CCCCceeecceeeCCCCChhhHHhch-HHh
Q 001007 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI--------SNPKKDFEFDRVYGPHVGQAELFSDV-QPF 210 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~--------~~~~k~F~FD~VF~p~asQeeVFeeV-~PL 210 (1191)
.+|+|||||||+.+.| ...++.+.++.+|.+..+.... ....+.|.||+||+++++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 3799999999998875 4567888889999988765421 23568999999999999999999985 899
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 290 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~ 290 (1191)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|.+||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~ 153 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPS 153 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCccc
Confidence 9999999999999999999999999999999999999999999998753 899999999999999999987653
Q ss_pred C-----ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccC------
Q 001007 291 G-----LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT------ 353 (1191)
Q Consensus 291 ~-----~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~t------ 353 (1191)
. ...++.+. ...+.+++++.|.+.+++..++..|.++|.++.|. |||||+||+|++.+.+...
T Consensus 154 ~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~ 233 (345)
T cd01368 154 STKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQ 233 (345)
T ss_pred cccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccccc
Confidence 2 23444443 23566899999999999999999999999988774 8999999999998765432
Q ss_pred --CceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc------CCCcccCCCCccccccccccC
Q 001007 354 --GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG 425 (1191)
Q Consensus 354 --g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~------kk~hVPYRdSKLTrLLqDSLG 425 (1191)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..||||||||||+||+|+||
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~ 313 (345)
T cd01368 234 DKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD 313 (345)
T ss_pred CCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 345689999999999999999999999999999999999999999999986 568999999999999999999
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHhHHHHHHh
Q 001007 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457 (1191)
Q Consensus 426 GNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr 457 (1191)
|||+|+||+||||+..+++||++||+||++|+
T Consensus 314 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 314 GEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-71 Score=672.53 Aligned_cols=349 Identities=32% Similarity=0.500 Sum_probs=290.8
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCc-cCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCC
Q 001007 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT-ISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~-~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLdG 217 (1191)
.+|.|+|||||+.+.+ ..+.+...++..+........ .......|.||+||+++++|++||+. ++|+|.+|++|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 5899999999998863 223344455555444332110 11115889999999999999999997 79999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEe
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~ 297 (1191)
||++|||||||||||||||.|...+|||||+++.+||+.+.... .+.|.|.|||+|||||.|+|||++++... .++.
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~L-~irE 162 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDGGDL-RLRE 162 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCCCCc-eEeE
Confidence 99999999999999999999999999999999999999998654 78999999999999999999999987664 4444
Q ss_pred cc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCcc
Q 001007 298 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEG 371 (1191)
Q Consensus 298 ~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER 371 (1191)
+. +..|.+++++.|.+.+++..+|..|..+|+++.|. |||||+||+|.|.+....... ..|+|+|||||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER 241 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence 33 44577999999999999999999999999998875 999999999999988754432 678999999999999
Q ss_pred ccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC--CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001007 372 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1191)
Q Consensus 372 ~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k--k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsT 449 (1191)
+.++++.|.|++|+.+||+||++||+||++|+.+ ..||||||||||||||++|||||+|+|||||+|...+|+||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 9999999999999999999999999999999986 46999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 450 LNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 450 LrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
|+||+||++|.+.+..+..... +.+ +..++.++..|+.++..++...
T Consensus 322 L~fAsrak~i~~~~~~n~~~~~-~~~-------~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILSD-KAL-------LKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHHHhhhcccccccceecch-hhh-------hHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999876533222111 111 1122456666666666655444
No 11
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.5e-70 Score=613.23 Aligned_cols=306 Identities=31% Similarity=0.453 Sum_probs=271.5
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~p~asQeeVFee-V~PLV~sv 214 (1191)
+||+|||||||+.+.|. ..++.+++++++.+..+..... ...+.|+||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998773 4667777777888876533211 135789999999999999999998 59999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceE
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 294 (1191)
++|||+||||||||||||||||+|+..++||+||++++||+.++... ..|.|++||+|||||+|+|||++.. ...
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~--~l~ 155 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDRK--RLS 155 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCcc--cee
Confidence 99999999999999999999999999999999999999999886543 6899999999999999999998732 234
Q ss_pred EEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCC
Q 001007 295 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 368 (1191)
Q Consensus 295 i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAG 368 (1191)
++.+. ...+.++++..|.+++++..++..|..+|..+.|. |||||+||+|+|.+.+. ....|+|+||||||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAG 232 (322)
T cd01367 156 VLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAG 232 (322)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCC
Confidence 44432 33567899999999999999999999999988764 89999999999998764 45789999999999
Q ss_pred CccccccC-CcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHH
Q 001007 369 SEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1191)
Q Consensus 369 SER~~ks~-a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETL 447 (1191)
|||...++ ..|++++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||...+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99998765 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHh
Q 001007 448 SSLNFSSRAR 457 (1191)
Q Consensus 448 sTLrFAsRAr 457 (1191)
+||+||+|++
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 12
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-70 Score=639.34 Aligned_cols=392 Identities=31% Similarity=0.460 Sum_probs=315.4
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCC---CccCCCCceeecceeeCCC-------CChhhHHhch-
Q 001007 143 KGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGD---DTISNPKKDFEFDRVYGPH-------VGQAELFSDV- 207 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~---~~~~~~~k~F~FD~VF~p~-------asQeeVFeeV- 207 (1191)
..+|||.|||||++..| ..+++++....++...++. ....+.+++|.||++|++. +.|+.||..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 36899999999998776 3456777666555444432 1233567999999999876 4799999998
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCC
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~ 287 (1191)
.-+|+++|+|||+||||||||||||||||+|..+++|||||+++.||..|.....+...|+|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 67899999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCC-ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeec--cCC--ce
Q 001007 288 TGNG-LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL--ITG--EN 356 (1191)
Q Consensus 288 ~~~~-~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~--~tg--~~ 356 (1191)
.++. ..+++.++ +.++.||.+..|++++++..++..|.++|+++.|+ |||||+||.+.|.+.-. .+| ..
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 7654 34455443 45677999999999999999999999999999886 89999999999987632 222 34
Q ss_pred eeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC------CCcccCCCCccccccccccCCCcce
Q 001007 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR------KDIVPYENSMLTKVLADSLGESSKT 430 (1191)
Q Consensus 357 ~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k------k~hVPYRdSKLTrLLqDSLGGNSKT 430 (1191)
..|+|.|||||||||+.++++.|.|++|+.+||+||.+||.||++|+++ ..+||||||.||+||+|+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 6799999999999999999999999999999999999999999999862 4599999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHhHHHHHHhhcccc-cCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLS-LGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAND 509 (1191)
Q Consensus 431 lMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~-~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~ 509 (1191)
+||+||||+.++|+||++|||||.|||.|++. ..|. ++...-|.+|++|++.|+.+|..++.
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNe-----------------dpnarvirElReEve~lr~qL~~ae~ 385 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE-----------------DPNARVIRELREEVEKLREQLEQAEA 385 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccC-----------------CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999998742 1121 13345678888888888888766332
Q ss_pred -HHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001007 510 -QCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVA 558 (1191)
Q Consensus 510 -q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~ 558 (1191)
+.-.+.+.+++..+. +++-..-|++++....+.+.+.+.++.
T Consensus 386 ~~~~el~e~l~esekl-------i~ei~~twEEkl~ktE~in~erq~~L~ 428 (1714)
T KOG0241|consen 386 MKLPELKEKLEESEKL-------IKEITVTWEEKLRKTEEINQERQAQLE 428 (1714)
T ss_pred ccchHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222 233334455555555554444444443
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=9.5e-70 Score=616.98 Aligned_cols=319 Identities=33% Similarity=0.516 Sum_probs=280.8
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCC--ccCCCCceeecceeeCCC-------CChhhHHhch-HH
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDD--TISNPKKDFEFDRVYGPH-------VGQAELFSDV-QP 209 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~--~~~~~~k~F~FD~VF~p~-------asQeeVFeeV-~P 209 (1191)
+||+||||+||++..|. ..++.+++ ..+.+.++.. ......+.|.||+||+++ ++|++||+.+ .|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999987662 35667666 6777776542 123456899999999999 9999999985 89
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 289 (1191)
+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.........|.|.+||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 99999999999999999999999999999999999999999999999876655577899999999999999999998874
Q ss_pred --CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc----CCcee
Q 001007 290 --NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENL 357 (1191)
Q Consensus 290 --~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~----tg~~~ 357 (1191)
.....++.+. ...+.+++++.|.+.+++..++..|.++|..+.|+ |||||+||+|++.+.... .....
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~ 239 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE
Confidence 2333444432 33567899999999999999999999999987764 899999999999987644 34567
Q ss_pred eeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC--------CCcccCCCCccccccccccCCCcc
Q 001007 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--------KDIVPYENSMLTKVLADSLGESSK 429 (1191)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k--------k~hVPYRdSKLTrLLqDSLGGNSK 429 (1191)
.|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+ ..||||||||||+||+|+||||++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 899999999999999999999999999999999999999999999863 489999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001007 430 TLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 430 TlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~ 463 (1191)
|+||+||||...+++||++||+||+|+++|++.+
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999998654
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=8.9e-69 Score=604.14 Aligned_cols=314 Identities=36% Similarity=0.543 Sum_probs=277.9
Q ss_pred CCEEEEEeeCCCCCCCC----CceEee-cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCC
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~-~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLdG 217 (1191)
.||+|+|||||+++.|. ..++.. +++.+|.+..+........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 48999999999987663 345555 4567788877655445567899999999999999999998 59999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceE
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~---~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~ 294 (1191)
||+||||||||||||||||+|+.. ++|||||++++||+.+.... ...|.|.+||+|||||+|+|||.+.......
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~ 158 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQKKKLE 158 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCCCcee
Confidence 999999999999999999999877 89999999999999887543 3789999999999999999999887644444
Q ss_pred EEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc---CCceeeeeeeEEe
Q 001007 295 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVD 365 (1191)
Q Consensus 295 i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~---tg~~~~SkL~LVD 365 (1191)
++.+. ...+.+++++.|.+++++..++..|.++|..+.+. |||||+||+|+|.+.+.. .+....|+|+|||
T Consensus 159 i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VD 238 (333)
T cd01371 159 LKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVD 238 (333)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEE
Confidence 44433 34567999999999999999999999999887764 899999999999987653 3345679999999
Q ss_pred cCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCC-cccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001007 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1191)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~-hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~e 444 (1191)
||||||..+++..|.+++|+.+||+||.+|++||.+|++++. |||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 999999999999999999999999999999999999998775 9999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhc
Q 001007 445 ETLSSLNFSSRARST 459 (1191)
Q Consensus 445 ETLsTLrFAsRAr~I 459 (1191)
||++||+||+|+|.|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999875
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=9.3e-69 Score=601.35 Aligned_cols=309 Identities=38% Similarity=0.591 Sum_probs=280.1
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCc
Q 001007 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdGy 218 (1191)
.+|+|+|||||+.+.| ...++.++++.+|.+..+. ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD-----DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC-----CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4899999999998776 4578888888888887642 358999999999999999999985 99999999999
Q ss_pred cEEEEeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEE
Q 001007 219 NVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 295 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~Gs~~---~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i 295 (1191)
|+||||||||||||||||+|+.. ++||+||++++||+.+... .....|.|++||+|||||.++|||++..... .+
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i 154 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDNL-QV 154 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCCc-eE
Confidence 99999999999999999999987 8999999999999988654 3466899999999999999999998875443 33
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCC
Q 001007 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1191)
Q Consensus 296 ~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS 369 (1191)
+.+. ...+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGs 234 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGS 234 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCC
Confidence 3322 34567899999999999999999999999887764 89999999999999887777788999999999999
Q ss_pred ccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC-CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHH
Q 001007 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448 (1191)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk-~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLs 448 (1191)
||..+++++|.+++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||||+|+||+||||...+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999977 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhc
Q 001007 449 SLNFSSRARST 459 (1191)
Q Consensus 449 TLrFAsRAr~I 459 (1191)
||+||+||++|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8.7e-69 Score=601.01 Aligned_cols=305 Identities=32% Similarity=0.526 Sum_probs=269.9
Q ss_pred CEEEEEeeCCCCCCC--CCceEeecCC-----cEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcC
Q 001007 145 NIKVFCRTRPLFEDE--GPSVVEFTDD-----CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 216 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E--~~svV~~~d~-----~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLd 216 (1191)
||+|||||||+.+.| ...++...++ ..+.+..+.. ....+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN--RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC--CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 799999999998776 3355655444 3566655432 2346899999999999999999998 6999999999
Q ss_pred CccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEE
Q 001007 217 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 296 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~ 296 (1191)
|||+||||||||||||||||+|+..++|||||++++||+.++.. .+.|.|.+||+|||||+|+|||++..... .++
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~ 154 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKEL-PIR 154 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCCCc-eEE
Confidence 99999999999999999999999999999999999999987543 37899999999999999999998865443 343
Q ss_pred ec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCc
Q 001007 297 LQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 370 (1191)
Q Consensus 297 ~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSE 370 (1191)
.. ....+.++++..|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+. .....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence 33 233567999999999999999999999999887764 89999999999988754 23678999999999999
Q ss_pred cccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHh
Q 001007 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1191)
Q Consensus 371 R~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTL 450 (1191)
|..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 001007 451 NFSSRAR 457 (1191)
Q Consensus 451 rFAsRAr 457 (1191)
+||+|||
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999985
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.2e-68 Score=601.00 Aligned_cols=315 Identities=45% Similarity=0.697 Sum_probs=285.7
Q ss_pred CCCEEEEEeeCCCCCCC---CCceEeecCC--cEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCC
Q 001007 143 KGNIKVFCRTRPLFEDE---GPSVVEFTDD--CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG 217 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E---~~svV~~~d~--~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdG 217 (1191)
+|+|+|+||+||+.+.| ...++.++++ .+|.+..+ ....+.|.||+||+++++|++||+.|.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999999886 4567777766 67777653 234589999999999999999999999999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC--CCceEE
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKI 295 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~--~~~~~i 295 (1191)
+|+||||||+|||||||||+|+..++||+||++++||+.++.....+..|.|.+||+|||||+++|||++.. .....+
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i 156 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEI 156 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEE
Confidence 999999999999999999999999999999999999999887655578999999999999999999999863 333444
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCC
Q 001007 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1191)
Q Consensus 296 ~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS 369 (1191)
+.+. ...+.+++.+.|.+++++..++..|.++|....+. |||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 157 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGs 236 (329)
T cd01366 157 KHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGS 236 (329)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCC
Confidence 4443 33467899999999999999999999999887664 89999999999999888777888999999999999
Q ss_pred ccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001007 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1191)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsT 449 (1191)
|+..+.++.|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++|
T Consensus 237 E~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 237 ERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred cccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccc
Q 001007 450 LNFSSRARSTVL 461 (1191)
Q Consensus 450 LrFAsRAr~I~~ 461 (1191)
|+||+|+++|++
T Consensus 317 L~~a~~~~~i~~ 328 (329)
T cd01366 317 LRFASRVRSVEL 328 (329)
T ss_pred HHHHHHhhcccC
Confidence 999999999864
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.8e-68 Score=598.52 Aligned_cols=306 Identities=34% Similarity=0.537 Sum_probs=274.5
Q ss_pred CEEEEEeeCCCCCCC---CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCccE
Q 001007 145 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E---~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdGyN~ 220 (1191)
||+||||+||+.+.| ...++.+.++.+|.+..+ ...+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 799999999998875 356777777767777654 3458999999999999999999985 8999999999999
Q ss_pred EEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEecc-
Q 001007 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS- 299 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~- 299 (1191)
||||||||||||||||+|+..++||+||++++||+.+.... ...|.|++||+|||||+|+|||++.+... .+..+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l-~i~~~~~ 152 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQEL-RIREDPN 152 (321)
T ss_pred eEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc--CceEEEEEEEEEEEcCEeEEccCCCCCCc-eEEECCC
Confidence 99999999999999999999999999999999999886543 66899999999999999999999876443 333332
Q ss_pred -cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccC---CceeeeeeeEEecCCCcc
Q 001007 300 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEG 371 (1191)
Q Consensus 300 -~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~t---g~~~~SkL~LVDLAGSER 371 (1191)
...+.+++++.|.+++++..++..|.++|..+.|. |||||+||+|+|.+.+... +....|+|+|||||||||
T Consensus 153 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 153 KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCc
Confidence 34567899999999999999999999999887764 8999999999999887654 556789999999999999
Q ss_pred ccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC--CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001007 372 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1191)
Q Consensus 372 ~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk--~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsT 449 (1191)
..+.+ .|.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 99999999999999999999999999985 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhc
Q 001007 450 LNFSSRARST 459 (1191)
Q Consensus 450 LrFAsRAr~I 459 (1191)
|+||+|+++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999874
No 19
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.1e-68 Score=603.33 Aligned_cols=317 Identities=35% Similarity=0.495 Sum_probs=276.9
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCC-cEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCC
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEFTDD-CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~~d~-~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLdG 217 (1191)
+||+|+||+||+.+.|. ..++..+++ .+|.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 59999999999987662 356777655 5666665432 23356899999999999999999998 59999999999
Q ss_pred ccEEEEeeccCCCCcccccccCC-----------CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSS-----------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~-----------~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~ 286 (1191)
||+||||||||||||||||+|+. .++|||||++++||+.+... ...|.|++||+|||||+|+|||+
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCC
Confidence 99999999999999999999974 34899999999999988653 56899999999999999999998
Q ss_pred CCC--CCceEEEec----ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccC---
Q 001007 287 QTG--NGLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT--- 353 (1191)
Q Consensus 287 ~~~--~~~~~i~~~----~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~t--- 353 (1191)
+.. .....+..+ ....+.++++..|.+++++..++..|.++|..+.|+ |||||+||+|++.+.....
T Consensus 158 ~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~ 237 (352)
T cd01364 158 SESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237 (352)
T ss_pred CccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC
Confidence 874 333344443 234567899999999999999999999999888764 8999999999998875432
Q ss_pred CceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEE
Q 001007 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMI 433 (1191)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMI 433 (1191)
.....|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 22357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001007 434 VNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 434 v~ISPs~~~~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
+||||...+++||++||+||+|+++|++.|.
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~ 348 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKPE 348 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 9999999999999999999999999987653
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.8e-67 Score=593.86 Aligned_cols=310 Identities=37% Similarity=0.491 Sum_probs=272.7
Q ss_pred CEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccC------CCCceeecceeeCCCCChhhHHhch-HHhHhhhcCC
Q 001007 145 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTIS------NPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 217 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~------~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdG 217 (1191)
.|+|+||+||+...+...+...+++..+.+..++.... ...+.|.||+||++ ++|++||+.+ .|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999987766666667777877776654322 23468999999999 9999999986 8999999999
Q ss_pred ccEEEEeeccCCCCcccccccCC---CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC----
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN---- 290 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~---~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~---- 290 (1191)
||+||||||||||||||||+|+. .++|||||++++||+.++.. .+..|.|++||+|||||+|+|||++...
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~ 157 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR--ATKTYTVHVSYLEIYNEQLYDLLGDTPEALES 157 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc--cCcceEEEEEEEEEECCEeecCCCCCcccccc
Confidence 99999999999999999999976 47899999999999988653 3567999999999999999999988742
Q ss_pred -CceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEe--eccCCceeeeee
Q 001007 291 -GLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKL 361 (1191)
Q Consensus 291 -~~~~i~~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~--n~~tg~~~~SkL 361 (1191)
....++.+ ....+.+++++.|.+++++..++..|..+|....+. |||||+||+|+|.+. .........|+|
T Consensus 158 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l 237 (334)
T cd01375 158 LPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKL 237 (334)
T ss_pred CCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEE
Confidence 22334433 234567899999999999999999999999987664 899999999999987 334445678999
Q ss_pred eEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC-CcccCCCCccccccccccCCCcceEEEEEeCCCC
Q 001007 362 SLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNA 440 (1191)
Q Consensus 362 ~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk-~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~ 440 (1191)
+|||||||||..+++..|.+++|+..||+||.+|++||.+|++++ .||||||||||+||+|+|||||+|+||+||||..
T Consensus 238 ~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~ 317 (334)
T cd01375 238 NLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEP 317 (334)
T ss_pred EEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCch
Confidence 999999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHhHHHHHHh
Q 001007 441 ANMSETLSSLNFSSRAR 457 (1191)
Q Consensus 441 ~~~eETLsTLrFAsRAr 457 (1191)
.+++||++||+||+|++
T Consensus 318 ~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 318 SNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999999984
No 21
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=4.4e-67 Score=591.00 Aligned_cols=307 Identities=34% Similarity=0.534 Sum_probs=268.5
Q ss_pred CEEEEEeeCCCCCCCCC----ceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCc
Q 001007 145 NIKVFCRTRPLFEDEGP----SVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E~~----svV~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdGy 218 (1191)
+|+|+||+||+.+.|.. .++.+.+ +..+.+. ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG--------TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec--------CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999877632 3444432 2333332 147899999999999999999985 89999999999
Q ss_pred cEEEEeeccCCCCcccccccCC------CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC--C
Q 001007 219 NVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--N 290 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~Gs~------~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~--~ 290 (1191)
|+||||||||||||||||+|+. .++|||||++++||+.++... ...+|.|.|||+|||||+|+|||.+.. .
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 9999999999999999999974 579999999999999887543 357899999999999999999998874 3
Q ss_pred CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc----------CC
Q 001007 291 GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----------TG 354 (1191)
Q Consensus 291 ~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~----------tg 354 (1191)
....++.+. ...+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+.. ..
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 344454443 34567899999999999999999999999887764 899999999999988763 34
Q ss_pred ceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCcceE
Q 001007 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk---~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
....|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 4678999999999999999999999999999999999999999999999876 7999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHhhcc
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRARSTV 460 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr~I~ 460 (1191)
||+||||...+++||++||+||+|+++|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999874
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.4e-65 Score=572.59 Aligned_cols=312 Identities=38% Similarity=0.585 Sum_probs=282.8
Q ss_pred CEEEEEeeCCCCCCC---CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCccE
Q 001007 145 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E---~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdGyN~ 220 (1191)
+|+||||+||+...| .+.++.+.++++|.+.++........+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998764 678899888889999887654556679999999999999999999985 7999999999999
Q ss_pred EEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCC--CCCceEEEec
Q 001007 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT--GNGLAKIRLQ 298 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~--~~~~~~i~~~ 298 (1191)
||||||+|||||||||+|+..++|||||++++||+.+.........|.|.+||+|||||+|+|||.+. ... ..++.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~-l~i~~~ 159 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKP-LSLRED 159 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCC-cEEEEc
Confidence 99999999999999999999999999999999999887654446789999999999999999999986 333 334443
Q ss_pred c--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCc--eeeeeeeEEecCCCc
Q 001007 299 S--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSE 370 (1191)
Q Consensus 299 ~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~--~~~SkL~LVDLAGSE 370 (1191)
. ...+.+++++.|.+++++..++..|..+|....+. |||||+||+|+|.+.+..... ...|+|+||||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 3 34577899999999999999999999999887664 799999999999998876654 778999999999999
Q ss_pred cccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC--CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHH
Q 001007 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448 (1191)
Q Consensus 371 R~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk--~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLs 448 (1191)
+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||+|...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHh
Q 001007 449 SLNFSSRAR 457 (1191)
Q Consensus 449 TLrFAsRAr 457 (1191)
||+||+|++
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999985
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-65 Score=596.18 Aligned_cols=322 Identities=29% Similarity=0.449 Sum_probs=281.4
Q ss_pred cCCCCEEEEEeeCCCC-CCCCCceEeecCCcEEEEecCCCccC-------CCCceeecceeeCCCCChhhHHhch-HHhH
Q 001007 141 TAKGNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTIS-------NPKKDFEFDRVYGPHVGQAELFSDV-QPFV 211 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~-~~E~~svV~~~d~~tI~v~~~~~~~~-------~~~k~F~FD~VF~p~asQeeVFeeV-~PLV 211 (1191)
+.+..|.||||+||+. ..+...++.+.++.+|.+..|.+... ...+.|.|.+||+|+++|.+||+.+ .|+|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 5678999999999998 55667788899999999987644322 2247899999999999999999985 8999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhcc--------------------------------
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNS-------------------------------- 259 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~-------------------------------- 259 (1191)
.+++.|.|..+|+||.|||||||||+|++.++||+||+++.||+.++.
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~ 187 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA 187 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999955431
Q ss_pred ---C----------------------------cccccccceeEEEEEEechhhhcccCCCCCCc-----eEEEe--cccc
Q 001007 260 ---D----------------------------TTATARFNFAVTVFELYNEQLRELLPQTGNGL-----AKIRL--QSLE 301 (1191)
Q Consensus 260 ---~----------------------------~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~-----~~i~~--~~~~ 301 (1191)
+ -..+..|.|+|||+|||||-|||||.+.+... ..++. ....
T Consensus 188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~ 267 (809)
T KOG0247|consen 188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNM 267 (809)
T ss_pred ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCe
Confidence 0 01345689999999999999999998764321 11222 3345
Q ss_pred cceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc--CCceeeeeeeEEecCCCcccccc
Q 001007 302 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAE 375 (1191)
Q Consensus 302 ~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~--tg~~~~SkL~LVDLAGSER~~ks 375 (1191)
++.|++.+.|.+.+|++++|..|.++|..++|+ |||||+||+|.+.+.... .+....|.|.|||||||||..++
T Consensus 268 ~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rt 347 (809)
T KOG0247|consen 268 YVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRT 347 (809)
T ss_pred eeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccc
Confidence 688999999999999999999999999999885 999999999999887655 45567899999999999999999
Q ss_pred CCcchhhHHHHHhhhhhHHHHHHHHhhccC-----CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHh
Q 001007 376 DDSGERITDVLHVMKSLSALGDVLSSLTSR-----KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1191)
Q Consensus 376 ~a~G~RLkEa~~INkSLsaLg~VIsALa~k-----k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTL 450 (1191)
+++|.||+||++||.||++||.||.+|..+ +.+|||||||||++++++|.|..+.+||+||+|...+|+|+++.|
T Consensus 348 q~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vl 427 (809)
T KOG0247|consen 348 QNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVL 427 (809)
T ss_pred cchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHH
Confidence 999999999999999999999999999863 379999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 001007 451 NFSSRARSTVLS 462 (1191)
Q Consensus 451 rFAsRAr~I~~~ 462 (1191)
+||+-+..|.+.
T Consensus 428 kFaeiaq~v~v~ 439 (809)
T KOG0247|consen 428 KFAEIAQEVEVA 439 (809)
T ss_pred HHHHhccccccc
Confidence 999999988643
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.5e-64 Score=563.94 Aligned_cols=316 Identities=39% Similarity=0.587 Sum_probs=279.8
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCc--EEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCC
Q 001007 145 NIKVFCRTRPLFEDE----GPSVVEFTDDC--TIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 217 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E----~~svV~~~d~~--tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLdG 217 (1191)
+|+|+|||||+...| .+.++.+.++. +|.+..+. .....+.|.||+||+++++|++||+.+ .|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 699999999998776 34677776554 66665442 234568999999999999999999985 8999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEe
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~ 297 (1191)
+|+|||+||+|||||||||+|+.+++||+||++++||+.+.... ....|.|++||+|||||+++|||++.... ..++.
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~-l~i~~ 156 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKK-LEIRE 156 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCC-cEEEE
Confidence 99999999999999999999999999999999999999886433 36789999999999999999999877544 34444
Q ss_pred cc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEe--eccCCceeeeeeeEEecCCC
Q 001007 298 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKLSLVDLAGS 369 (1191)
Q Consensus 298 ~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~--n~~tg~~~~SkL~LVDLAGS 369 (1191)
+. ...+.+++++.|.+++++..++..+..+|....+. |||||+||+|+|.+. +...+....|+|+|||||||
T Consensus 157 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGs 236 (335)
T smart00129 157 DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGS 236 (335)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCC
Confidence 33 34567899999999999999999999999887664 899999999999966 55566678999999999999
Q ss_pred ccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc--CCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHH
Q 001007 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1191)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~--kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETL 447 (1191)
||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+++||+
T Consensus 237 e~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl 316 (335)
T smart00129 237 ERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETL 316 (335)
T ss_pred CccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHH
Confidence 99999999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhcccccC
Q 001007 448 SSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 448 sTLrFAsRAr~I~~~~~ 464 (1191)
+||+||+++++|++.|.
T Consensus 317 ~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 317 STLRFASRAKEIKNKAI 333 (335)
T ss_pred HHHHHHHHHhhcccCCC
Confidence 99999999999987653
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.2e-64 Score=562.16 Aligned_cols=309 Identities=38% Similarity=0.569 Sum_probs=261.5
Q ss_pred eeCCCCCCCCC----ceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCCccEEEEe
Q 001007 151 RTRPLFEDEGP----SVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFA 224 (1191)
Q Consensus 151 RVRPl~~~E~~----svV~~~d-~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLdGyN~~IfA 224 (1191)
||||+++.|.. ..+...+ .................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999876521 2222221 11111122222333456899999999999999999998 599999999999999999
Q ss_pred eccCCCCcccccccC--CCCCChHHHHHHHHHHhhccCccc-ccccceeEEEEEEechhhhcccCCCC---CCceEEEec
Q 001007 225 YGQTHSGKTHTMEGS--SHDRGLYARCFEELFDLSNSDTTA-TARFNFAVTVFELYNEQLRELLPQTG---NGLAKIRLQ 298 (1191)
Q Consensus 225 YGQTGSGKTyTM~Gs--~~~~GIIPRale~LF~~i~~~~~~-~~~f~V~VS~lEIYNE~V~DLL~~~~---~~~~~i~~~ 298 (1191)
||+|||||||||+|+ ..++||+||++++||..+...... ...|.|+|||+|||||+|+|||.+.. .....++.+
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 899999999999999988754332 46899999999999999999999873 233445544
Q ss_pred cc---ccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCc----eeeeeeeEEecC
Q 001007 299 SL---ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE----NLYSKLSLVDLA 367 (1191)
Q Consensus 299 ~~---~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~----~~~SkL~LVDLA 367 (1191)
.. ..+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 43 4567899999999999999999999999988775 899999999999998876554 378999999999
Q ss_pred CCccccccCC-cchhhHHHHHhhhhhHHHHHHHHhhccC--CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001007 368 GSEGLIAEDD-SGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1191)
Q Consensus 368 GSER~~ks~a-~G~RLkEa~~INkSLsaLg~VIsALa~k--k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~e 444 (1191)
|||+..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 4889999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhc
Q 001007 445 ETLSSLNFSSRARST 459 (1191)
Q Consensus 445 ETLsTLrFAsRAr~I 459 (1191)
||++||+||+++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999875
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-61 Score=552.07 Aligned_cols=315 Identities=26% Similarity=0.380 Sum_probs=273.8
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~p~asQeeVFee-V~PLV~sv 214 (1191)
..|.||||-||++..|. ..+|.+|..+.+.|+-+...+. -.+..|.||++|++.++++.||.- ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 46999999999998873 3688888888888887643221 235899999999999999999996 59999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCC------CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCC
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTMEGSSH------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 288 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~Gs~~------~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~ 288 (1191)
|+|--+|+||||||||||||||.|+-. ..||..++.+++|..+....-....+.|++||||||+.++||||+..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 999999999999999999999988542 36999999999999887544456789999999999999999999874
Q ss_pred CCCceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCc----CCceeEEEEEEEEEEeeccCCceeeeeee
Q 001007 289 GNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLS 362 (1191)
Q Consensus 289 ~~~~~~i~~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T----~SSRSH~IftI~V~~~n~~tg~~~~SkL~ 362 (1191)
.. ..+..+ ....++|+.+..|.+.++++++++.|...|+.+.| +|||||+||+|.+.... +....||++
T Consensus 368 ~K--LrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKfS 442 (676)
T KOG0246|consen 368 KK--LRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKFS 442 (676)
T ss_pred cc--eEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEEE
Confidence 32 222222 23568899999999999999999999999987765 49999999999997643 247789999
Q ss_pred EEecCCCcccc-ccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCC-CcceEEEEEeCCCC
Q 001007 363 LVDLAGSEGLI-AEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGE-SSKTLMIVNICPNA 440 (1191)
Q Consensus 363 LVDLAGSER~~-ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGG-NSKTlMIv~ISPs~ 440 (1191)
||||||+||.. .+.++.++..||..|||||+||..||.||..++.|+|||.||||++|+|||=| ||+|+||+||||+.
T Consensus 443 lIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~ 522 (676)
T KOG0246|consen 443 LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGI 522 (676)
T ss_pred EEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCc
Confidence 99999999965 44567788899999999999999999999999999999999999999999988 99999999999999
Q ss_pred CCHHHHHHHhHHHHHHhhccccc
Q 001007 441 ANMSETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 441 ~~~eETLsTLrFAsRAr~I~~~~ 463 (1191)
.+++.||+|||||+|+++.....
T Consensus 523 ~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 523 SSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred chhhhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999976543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-60 Score=568.28 Aligned_cols=341 Identities=31% Similarity=0.440 Sum_probs=274.0
Q ss_pred eCCCCCCCC----CceEee-cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCCccEEEEee
Q 001007 152 TRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFAY 225 (1191)
Q Consensus 152 VRPl~~~E~----~svV~~-~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLdGyN~~IfAY 225 (1191)
|||+...|. ..|+++ +....|.+ +....|+||+||....+|.++|+. |.|+++.+|+|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 688876542 234442 23333333 335889999999999999999997 6999999999999999999
Q ss_pred ccCCCCcccccccC----CCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEecc--
Q 001007 226 GQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS-- 299 (1191)
Q Consensus 226 GQTGSGKTyTM~Gs----~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~-- 299 (1191)
|||||||||||.+. ..+.|+|||++.++|..+.... ...|.|.|+|+||||+.|+|||.+...... +....
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~--~~~f~i~vs~vely~e~v~dl~~~~~~~~~-i~~~e~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTE--SFVFRITVSFVELYNEEVLDLLKPSRLKAN-IKLREPK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhh--ccceeeeeeeeeccchhhhhhcChhhhhhc-eeccccC
Confidence 99999999999876 2345999999999999987533 378999999999999999999985443221 22222
Q ss_pred -cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeec-cCCceeeeeeeEEecCCCcccc
Q 001007 300 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITGENLYSKLSLVDLAGSEGLI 373 (1191)
Q Consensus 300 -~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~-~tg~~~~SkL~LVDLAGSER~~ 373 (1191)
...+.++++..|....+....|..|...|++++|+ |||||+||++++.+... .......+||+|||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 24567899999999999999999999999988875 89999999999987543 3333467999999999999999
Q ss_pred ccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCC--cccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhH
Q 001007 374 AEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD--IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 451 (1191)
Q Consensus 374 ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~--hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLr 451 (1191)
+++++|+|++|+.+||.+|++||+||++|...+. |||||+||||+||||+||||+.|+||+||||+..++.||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999998654 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCc-chhhh----hhhHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 001007 452 FSSRARSTVLSLGN-RDTIK----KWRDIANDARKELYER-----EKEIQDLKQEILGLRQA 503 (1191)
Q Consensus 452 FAsRAr~I~~~~~n-~~tik----k~k~i~~~l~~el~~l-----e~eI~~Lk~Ei~~Lk~~ 503 (1191)
||.||++|++.+.. .++.. ..+...+.+..++... ..+|+.|..|+..+...
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~ 371 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEET 371 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhh
Confidence 99999999987543 32322 2333333333333222 24555555555555444
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-55 Score=524.43 Aligned_cols=315 Identities=31% Similarity=0.506 Sum_probs=270.1
Q ss_pred CCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCCccE
Q 001007 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNV 220 (1191)
Q Consensus 142 lkGnIRV~~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svLdGyN~ 220 (1191)
.-.+++++++..|-..++ ..+...+...+..... ....|.||+||++.++|++||+. +.|+++++++||||
T Consensus 20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~ 91 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE--RLINTSKKSHVSLEKS------KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNC 91 (568)
T ss_pred eecCceEEEeecCCCcch--heeecccccccccccc------cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccc
Confidence 446778888888853332 1122222222222211 14679999999999999999997 59999999999999
Q ss_pred EEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEe--c
Q 001007 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--Q 298 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~--~ 298 (1191)
||||||||||||||||.|...++||||+++.+||+.+..... +..|.|.+||+|||||+++|||.+.... ..++. .
T Consensus 92 TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~~~~~~ 169 (568)
T COG5059 92 TVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEES-LNIREDSL 169 (568)
T ss_pred eEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcccc-ccccccCC
Confidence 999999999999999999999999999999999998875443 6789999999999999999999887654 12222 2
Q ss_pred ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccccc
Q 001007 299 SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIA 374 (1191)
Q Consensus 299 ~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~k 374 (1191)
....+.+++...+.+.++++.+|+.|..+|..+.+. |||||+||++++.+.+...+....++|+||||||||++..
T Consensus 170 ~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~ 249 (568)
T COG5059 170 LGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAAR 249 (568)
T ss_pred CceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccch
Confidence 234456789999999999999999999999988875 8999999999999998777766668999999999999999
Q ss_pred cCCcchhhHHHHHhhhhhHHHHHHHHhhcc--CCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHH
Q 001007 375 EDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 452 (1191)
Q Consensus 375 s~a~G~RLkEa~~INkSLsaLg~VIsALa~--kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrF 452 (1191)
++..+.|++|+..||+||.+||+||++|.. +..|||||+||||||||++|||+++|+|||||+|...+++||.+||+|
T Consensus 250 ~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~ 329 (568)
T COG5059 250 TGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKF 329 (568)
T ss_pred hhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHH
Confidence 999999999999999999999999999997 788999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCcc
Q 001007 453 SSRARSTVLSLGNR 466 (1191)
Q Consensus 453 AsRAr~I~~~~~n~ 466 (1191)
|+||++|.+.+...
T Consensus 330 a~rak~I~~~~~~~ 343 (568)
T COG5059 330 ASRAKSIKNKIQVN 343 (568)
T ss_pred HHHHhhcCCccccc
Confidence 99999998765544
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=8.8e-47 Score=393.43 Aligned_cols=172 Identities=44% Similarity=0.657 Sum_probs=162.0
Q ss_pred HHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhh
Q 001007 203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLR 282 (1191)
Q Consensus 203 VFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~ 282 (1191)
||+.+.|+|+.+++|||+||||||||||||||||+|++.++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99998899999999999999999999999999999999999999999987
Q ss_pred cccCCCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccC---Cc
Q 001007 283 ELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GE 355 (1191)
Q Consensus 283 DLL~~~~~~~~~i~~~~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~t---g~ 355 (1191)
+..++..|..+|.++.|. |||||+||+|++.+.+... +.
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 677888888889877764 8999999999999877654 45
Q ss_pred eeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEE
Q 001007 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVN 435 (1191)
Q Consensus 356 ~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ 435 (1191)
...|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+|
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 001007 436 ICP 438 (1191)
Q Consensus 436 ISP 438 (1191)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.96 E-value=4.5e-32 Score=328.07 Aligned_cols=652 Identities=36% Similarity=0.373 Sum_probs=446.8
Q ss_pred EEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHH
Q 001007 172 IRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 251 (1191)
Q Consensus 172 I~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale 251 (1191)
+..+............+.|+.+..+...+..-+....+.+..++++++.. +|++|++.+.....|++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 83 (670)
T KOG0239|consen 12 IHGNTSDDTLSNPKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFK 83 (670)
T ss_pred ccCCcccccccccccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhh
Confidence 33333334444556889999999887777777777777778888887775 8999999999999999999988
Q ss_pred HHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCc
Q 001007 252 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGND 331 (1191)
Q Consensus 252 ~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~ 331 (1191)
.+++....... . ..++.|++.+.|++.........+..........+.......+..+..+......++...
T Consensus 84 ~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 155 (670)
T KOG0239|consen 84 ELIDLANSDKT--S------NVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLY 155 (670)
T ss_pred hcccccccCCC--c------hhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhcccc
Confidence 88875443221 1 167889999999987654433222222222233344445555566666666655555443
Q ss_pred CcCCceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccC
Q 001007 332 VSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411 (1191)
Q Consensus 332 ~T~SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPY 411 (1191)
...++. .... ...++|+|+.+.......-+....+...+-.+...+...+..
T Consensus 156 ~~~~~~---------------~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~---------- 207 (670)
T KOG0239|consen 156 LDLSKV---------------TPEN---SLSLLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS---------- 207 (670)
T ss_pred cccccc---------------chhh---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 332222 1111 111566666665433333333333333332222222222222
Q ss_pred CCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHH
Q 001007 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQ 491 (1191)
Q Consensus 412 RdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~ 491 (1191)
....++.|.+.+| .|+...+.++.-. .......++|.
T Consensus 208 -~~~~~~~l~~~~~-------------------------~~~~~~~~~~~l~-----------------~~~~~~~~~i~ 244 (670)
T KOG0239|consen 208 -AQEERRVLADSLG-------------------------NYADLRRNIKPLE-----------------GLESTIKKKIQ 244 (670)
T ss_pred -hHHHHHHHHHHhh-------------------------hhhhHHHhhhhhh-----------------hhhhHHHHHHH
Confidence 4455566666665 4444444432111 11122334489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 492 DLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQI 571 (1191)
Q Consensus 492 ~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~ql 571 (1191)
.|+.++..|+..+..+.+++..+.+++++.++....++.++...+..+.+++ .+++...++.+++.++...+.-..-.-
T Consensus 245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvR 323 (670)
T KOG0239|consen 245 ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVR 323 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEec
Confidence 9999999999999999999999999999988888777777776666666555 444444444444443332110000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 572 QQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEEN 651 (1191)
Q Consensus 572 qq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ieqL~eEn 651 (1191)
-...+++...+..+.... +..+.....+.......-..-.-.|.....+..+.-.+.++..+
T Consensus 324 P~~~~e~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv 385 (670)
T KOG0239|consen 324 PLLPSEKQRLQSKVIDTE------------------EQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLV 385 (670)
T ss_pred CCCccccccccccccccC------------------CcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHH
Confidence 000000000001110000 00000000000000000001223345555566777888899999
Q ss_pred HHHHHhhhhc------CCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCcccCCCCcccccCCCeEEeeccCccccc
Q 001007 652 EKLFDRLTEK------ASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIK 725 (1191)
Q Consensus 652 eKL~~rl~~k------a~s~~s~~~~s~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1191)
.+++|-...- .++|++.+++.| .+..+ .+.|.+ ..+.-+.+..+++|-.-.+
T Consensus 386 ~S~lDGYnVCIFAYGQTGSGKTyTM~G~-------------------~~~~~-Giipra--l~~lF~~~~~~~~g~~y~~ 443 (670)
T KOG0239|consen 386 QSALDGYNVCIFAYGQTGSGKTYTMSGP-------------------TPEDP-GIIPRA--LEKLFRTITSLKSGWKYDK 443 (670)
T ss_pred HHHhcCcceeEEEecccCCCccccccCC-------------------CcccC-CccHHH--HHHHHHHHHhhccCceEEe
Confidence 9999875432 233333333332 11111 344444 6777788888899888899
Q ss_pred ccCchhhHHHhhhCCCCcc-cccchhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHhHhcCcccchhhhhhh
Q 001007 726 TTPAGEYLTAALNDFNPEQ-YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVS 804 (1191)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1191)
++|++|+.+.++.||.++. |.+.++|.+++|+.+|++.+++|+.|..+||.+|.+|.+..+++.+.+.|.+.+++|+|.
T Consensus 444 ~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~ 523 (670)
T KOG0239|consen 444 TVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVF 523 (670)
T ss_pred eeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEE
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhcCccccccccCcchhhhhccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccchhhhhhhh
Q 001007 805 RVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRM 884 (1191)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1191)
+|+|.|+ ++.+.+.+.|+.+|.+.|+++| .+++|+++.++.+.|..++.++......+.+.+ .+.
T Consensus 524 ~v~v~g~-------~~~t~~~~~g~l~LVDLAGSER------~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~--k~~ 588 (670)
T KOG0239|consen 524 RVRIRGI-------NELTGIRVTGVLNLVDLAGSER------VSKSGVTGERLKEAQNINKSLSALGDVISALAS--KRS 588 (670)
T ss_pred EEEEecc-------ccCcccccccceeEeecccCcc------cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh--cCC
Confidence 9999999 9999999999999999998887 777899999999999999999999988888877 444
Q ss_pred cccccccccccccccchhhhHHHHhhhhcchhhhhhhhccCChhhhHHHHHHHHhhcccccccccCCCCCCcccchhhhH
Q 001007 885 RGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLS 964 (1191)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1191)
++...++-..||.+..|. .+..+.-|+++|+..++++.|+|.+++++++|+|....+.+...|+++.+++..|+++..+
T Consensus 589 HiPyRNSKLT~lLq~sLG-G~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~ 667 (670)
T KOG0239|consen 589 HIPYRNSKLTQLLQDSLG-GDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLS 667 (670)
T ss_pred CCcccccchHHHhHhhhC-CccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhhh
Confidence 555799999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 001007 965 TAI 967 (1191)
Q Consensus 965 ~~~ 967 (1191)
+|+
T Consensus 668 ~~~ 670 (670)
T KOG0239|consen 668 TAI 670 (670)
T ss_pred hcC
Confidence 885
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.71 E-value=1.5e-10 Score=140.57 Aligned_cols=263 Identities=22% Similarity=0.216 Sum_probs=170.7
Q ss_pred hHHHHhhhhhhcccCCCCEEEEEeeCCCCCCC--CCceEeecC-----CcEEEEecCCCccCCCCceeecceeeCCCCCh
Q 001007 128 LINEKKRLFNDLLTAKGNIKVFCRTRPLFEDE--GPSVVEFTD-----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQ 200 (1191)
Q Consensus 128 ~~~eRrkLhN~l~elkGnIRV~~RVRPl~~~E--~~svV~~~d-----~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQ 200 (1191)
+.+.+|.||+.+...+ +++|+|+|+|..... ......+.+ ...+.++.. .........|.||.+|.+...+
T Consensus 290 eskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 290 ESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhh
Confidence 4567899999999999 999999999987442 212222211 112222211 1122344789999999999999
Q ss_pred hhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechh
Q 001007 201 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ 280 (1191)
Q Consensus 201 eeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~ 280 (1191)
..++....-+++..++| +++||++++|+++||. ....++..-.+...|..........|.+...+-+.++|-..
T Consensus 368 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (568)
T COG5059 368 ILVFREQSQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDR 441 (568)
T ss_pred hHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999988889998988 9999999999999995 33456666666888887776667778888888888887333
Q ss_pred hhcccCCCCCCceEE-Eeccc--ccceeeeeeccCCHHHHHHHHHHHHhhcCCcCc----CCceeEEEEEEEEEEeeccC
Q 001007 281 LRELLPQTGNGLAKI-RLQSL--ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLIT 353 (1191)
Q Consensus 281 V~DLL~~~~~~~~~i-~~~~~--~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T----~SSRSH~IftI~V~~~n~~t 353 (1191)
..+++.......... ..... .....+.........+..... .+...+....+ .++++|.+|..+....+...
T Consensus 442 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 520 (568)
T COG5059 442 LLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST 520 (568)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhh
Confidence 333332211111000 00000 000000000000001111111 12233333322 37899999988887665544
Q ss_pred CceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhc
Q 001007 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 403 (1191)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa 403 (1191)
+... ++.|||||+||. -+..-|.++++..++|++|..++++|.++.
T Consensus 521 ~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 521 KELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred HHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 4433 899999999999 899999999999999999999999998764
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.59 E-value=0.24 Score=55.29 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCC
Q 001007 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKA-SSVS 666 (1191)
Q Consensus 626 ~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ka-~s~~ 666 (1191)
+..+.++......+++...+.+-.+..+.|+++-..+ +.|.
T Consensus 151 ~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gv 192 (239)
T COG1579 151 VAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGV 192 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceE
Confidence 3445556666777777778888888889999986654 4443
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.47 E-value=0.78 Score=54.97 Aligned_cols=9 Identities=44% Similarity=0.165 Sum_probs=4.7
Q ss_pred ccccccCcc
Q 001007 821 LQSIMVSPV 829 (1191)
Q Consensus 821 ~~~~~~~~~ 829 (1191)
|++|.|.+=
T Consensus 378 ~~~~~v~~G 386 (428)
T PRK11637 378 NQSALVSVG 386 (428)
T ss_pred CCcCCCCCc
Confidence 455555543
No 34
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.88 E-value=1.9 Score=51.83 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.5
Q ss_pred cccCCCCCCCCcccCCCCcccc
Q 001007 687 ARNDNNNKGLPVDVAPLPLSAD 708 (1191)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~ 708 (1191)
.-+.++.++++...++.|+++.
T Consensus 285 ~i~~t~~~~~~~G~l~~PV~G~ 306 (420)
T COG4942 285 LISSTGGFGALRGQLAWPVTGR 306 (420)
T ss_pred ccccccccccccCCcCCCCCCc
Confidence 4455577888889999999743
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.81 E-value=0.68 Score=61.09 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 001007 223 FAYGQTHSGKTHTM 236 (1191)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1191)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999999876
No 36
>PRK11637 AmiB activator; Provisional
Probab=95.80 E-value=0.98 Score=54.13 Aligned_cols=6 Identities=33% Similarity=0.324 Sum_probs=2.6
Q ss_pred cCCCCc
Q 001007 700 VAPLPL 705 (1191)
Q Consensus 700 ~~~~~~ 705 (1191)
.+|-|+
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 344444
No 37
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.65 E-value=1.9 Score=48.82 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCc--ccCCCCc
Q 001007 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPV--DVAPLPL 705 (1191)
Q Consensus 628 ~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ka~s~~s~~~~s~~~~~~~~~q~~~~~~~~~~~~~~~~--~~~~~~~ 705 (1191)
..-+.|.|+.++-.+.-++|+.|..-| + .| ..+++. .+.+|.-|||+|--+++.-+|. +-.||-+
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~l-q---~k----~~~q~~-----~qstmsHRdIArhQasSSVFsWQqektps~~ 228 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKAL-Q---AK----KASQAA-----PQSTMSHRDIARHQASSSVFSWQQEKTPSRL 228 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHH-h---cc----cCCCcC-----ccccccHHHHHHHhccCcccccccccCcccc
Confidence 555666666666666666777775333 2 22 111111 1236777999988777666554 5555554
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.59 E-value=0.92 Score=59.89 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=6.0
Q ss_pred CHHHHHHHHHH
Q 001007 313 NPLEFSKVLKS 323 (1191)
Q Consensus 313 S~~E~~~lL~~ 323 (1191)
+..++..++..
T Consensus 118 ~~~~~~~~l~~ 128 (1164)
T TIGR02169 118 RLSEIHDFLAA 128 (1164)
T ss_pred cHHHHHHHHHH
Confidence 45566665543
No 39
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.56 E-value=1.4 Score=56.42 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=45.2
Q ss_pred hccchhh--------HHHHHHHHHHHhccchhHH----HHHHHhhhHHHHhH----------hcCcccchhhhhhhhhhh
Q 001007 751 ISDGANK--------LLMLVLAAVIKAGASREHE----ILAEIRDAVFAFIR----------KMEPTRVMDTMLVSRVRI 808 (1191)
Q Consensus 751 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 808 (1191)
++||.|- ++|-.++-+|-.|++--|- =..-+-+.+.-|+| ----.+++|-|++-+
T Consensus 645 la~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~--- 721 (980)
T KOG0980|consen 645 LADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQ--- 721 (980)
T ss_pred cCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH---
Confidence 5666666 6666666666555443332 22223333333322 223456788885543
Q ss_pred HHHHHhhhcCccc----cccccCcchhhhhc
Q 001007 809 LYIRSLLARSPEL----QSIMVSPVECFLEK 835 (1191)
Q Consensus 809 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 835 (1191)
||--+..-.||| -+|++-|++.-|++
T Consensus 722 -~lq~~~~~~eel~~~~~di~~e~l~~lld~ 751 (980)
T KOG0980|consen 722 -YLQTLNQLGEELLPKELDIDQELLGNLLDI 751 (980)
T ss_pred -HHHHHHHHhHHhccccchhhHHHHHHHHHH
Confidence 777888888887 35666666666554
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.48 E-value=1.3 Score=56.45 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 553 L~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
++.+..+|..+...++.++...++.+..++.++.+|.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 41
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.35 E-value=2.8 Score=45.80 Aligned_cols=158 Identities=25% Similarity=0.292 Sum_probs=78.0
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHH
Q 001007 467 DTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIE 546 (1191)
Q Consensus 467 ~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~ 546 (1191)
..|+..+.-..+.+......++.+.++..|+.+|..-|..+..+...+...+..-.+.-..+ ..++.....+...++.+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L-~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL-QNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666777777777777777666666665555444321111111 12233333334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHH--------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCc
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKM-------QIQ--------QRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMP 611 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~-------qlq--------q~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~ 611 (1191)
+.+.+.+..++.++.+..+++.. .++ -++..+..+...++.-+.||.+.+.....
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nl---------- 175 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANL---------- 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------
Confidence 55555555555544433333221 111 12334444444444444444433332221
Q ss_pred ccccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 001007 612 AVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 645 (1191)
Q Consensus 612 ~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ie 645 (1191)
.......+..++++-+......|.
T Consensus 176 ----------dp~~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 176 ----------DPAALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122445667788888777777665
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.35 E-value=4.3 Score=50.32 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 479 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE 517 (1191)
Q Consensus 479 l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qE 517 (1191)
+.+....++.+...|+.++..|+..|.....++..+..+
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666655555555443
No 43
>PRK09039 hypothetical protein; Validated
Probab=95.30 E-value=2.3 Score=49.94 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChh
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSS 627 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s 627 (1191)
.+..++.+.+........+..-++..++++|+.|+.++..|+..|......... ....+.
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~--------------------~~~~i~ 175 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE--------------------SQAKIA 175 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH
Confidence 344444555555555555555566666666777777776666666544443311 001244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001007 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 628 ~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~ 659 (1191)
.+..+|+..++++...+++.+. ++|.+|.
T Consensus 176 ~L~~~L~~a~~~~~~~l~~~~~---~~~~~l~ 204 (343)
T PRK09039 176 DLGRRLNVALAQRVQELNRYRS---EFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH---HHHHHHH
Confidence 5556666666665555554444 4555554
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.18 E-value=1.6 Score=57.55 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=5.7
Q ss_pred HHHhhhCCCC
Q 001007 733 LTAALNDFNP 742 (1191)
Q Consensus 733 ~~~~~~~~~~ 742 (1191)
|-+|+..|.|
T Consensus 977 lg~aiee~~~ 986 (1179)
T TIGR02168 977 LENKIKELGP 986 (1179)
T ss_pred HHHHHHHcCC
Confidence 3346666665
No 45
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.13 E-value=2 Score=48.15 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Q 001007 626 SSAVSKKLEEELKKRDALI---ERLHEENEKLFDRLTE 660 (1191)
Q Consensus 626 ~s~lkkKLEEeLkkrd~~i---eqL~eEneKL~~rl~~ 660 (1191)
.++...-||-||-.++..+ ++|++|.-.|.+.|--
T Consensus 145 AIErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 145 AIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554 5688887778777743
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.09 E-value=2.2 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 626 ~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.......++++++..++....+..+-+.|...|+..
T Consensus 140 ~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~e 175 (239)
T COG1579 140 LAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344556788888888888887777777777766544
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.01 E-value=2.3 Score=56.07 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.3
Q ss_pred ccccccccc
Q 001007 863 QGFKINLKP 871 (1191)
Q Consensus 863 ~~~~~~~~~ 871 (1191)
.||.|...|
T Consensus 1071 ~~~~~~~~~ 1079 (1179)
T TIGR02168 1071 AGIEIFAQP 1079 (1179)
T ss_pred cCceEEEeC
Confidence 345554444
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.99 E-value=1.7 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001007 633 LEEELKKRDALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 633 LEEeLkkrd~~ieqL~eEneKL~~rl~ 659 (1191)
.+..+.++|.+|..|+.....+.-=++
T Consensus 634 ~~~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 634 AQGQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334455556666655555444443333
No 49
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.75 E-value=3.5 Score=42.87 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 539 l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+++.++.....+.....++.+....-++..-+++.++........++..|..++.+
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444555555566666666666666665544
No 50
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.75 E-value=3.9 Score=47.42 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCC-CChhH
Q 001007 551 AQLRNQVAQLLQLEQEQKMQIQQR-DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDG-MDSSA 628 (1191)
Q Consensus 551 ~qL~~ql~qLlq~eeElk~qlqq~-e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~-~d~s~ 628 (1191)
+.|..++.++.+...++...+.+- +..+..|+.+|..|+.+... +...-.+ ++.+. +-...
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~-~q~~le~----------------Lr~EKVdlEn~ 171 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA-KQEELER----------------LRREKVDLENT 171 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHH----------------HHHHHHhHHHH
Confidence 455566666666666665555543 34567777777777653311 1111000 11111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 629 lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
+...-|.-.+++..++.+|..|...|-.+|..+
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333334445667778888999998888888765
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.70 E-value=5.6 Score=49.35 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRL 658 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl 658 (1191)
++.+|...+-.-|.+|+...+++.+.-
T Consensus 435 ql~~EkQeL~~yi~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 435 QLQEEKQELLEYIERLEQRLDKVADEK 461 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444455555666666666666654
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.89 Score=59.48 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 541 ~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
.+-+...+++..++..+........+.+.+++-.++++..|...-+..-+++.
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e 524 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVE 524 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555555555555555555555444444443333
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.58 E-value=5.6 Score=49.92 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHhhHHHhHHH
Q 001007 490 IQDLKQEILGLRQALKEANDQCVLLYNEVQ----KAWKVSFTLQSDLKSENYML 539 (1191)
Q Consensus 490 I~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElq----k~~k~~~eLq~dL~~e~~~l 539 (1191)
-+.++.||..|...|++++..|..+.+++- ........||.-+.+....|
T Consensus 607 Ed~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~taw 660 (961)
T KOG4673|consen 607 EDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAW 660 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHH
Confidence 356778888999999988888887766543 22333344444444433333
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.53 E-value=2.5 Score=49.12 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
.+.++...+..+.++..+.++++..+.....++..++.+|.++++.
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444433
No 55
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.37 E-value=3.7 Score=51.67 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=19.3
Q ss_pred cccchhhccchhhHHHHHHHHHHHhccchhHHHHHHHhh
Q 001007 745 YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRD 783 (1191)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1191)
|--+|+|=++.+.|.-. |-..|+ |..||||
T Consensus 553 YK~La~lh~~c~~Li~~----v~~tG~-----~~rEird 582 (594)
T PF05667_consen 553 YKLLASLHENCSQLIET----VEETGT-----ISREIRD 582 (594)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhH-----HHHHHHH
Confidence 77778888888885444 444553 4566665
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.17 E-value=8.8 Score=43.84 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 629 VSKKLEEELKKRDALIERLHEENEKLFD 656 (1191)
Q Consensus 629 lkkKLEEeLkkrd~~ieqL~eEneKL~~ 656 (1191)
....++.++.+....+.+...|+..|.+
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777877788777777776654
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.06 E-value=5.9 Score=50.96 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 643 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ 643 (1191)
+.+++.+++..+.++..++..|++++.+++.+...-+. +... ......-.....+.+.+-|++.-..
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~--~~~~-----------~~~s~~L~~~Q~~~I~~iL~~~~~~ 700 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES--QKSP-----------KKKSIVLSESQKRTIKEILKQQGEE 700 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccc-----------cCCCccCCHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777766553322111 1100 0111123445555666666666666
Q ss_pred HHHHHHHHHHHHHh
Q 001007 644 IERLHEENEKLFDR 657 (1191)
Q Consensus 644 ieqL~eEneKL~~r 657 (1191)
|.++-++..++...
T Consensus 701 I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 701 IDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHh
Confidence 66555555554443
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.90 E-value=3.8 Score=53.85 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=37.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 533 KSENYMLADKHKIEKEQNAQLRNQVAQLLQLE-QEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 533 ~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~e-eElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+.+..+.+..++..+...+.++.++..+.... ++...++.+.+++++.|+.+++.++.++..
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~ 419 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINS 419 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555556666666666666666544 555666666666666666666666665543
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.84 E-value=5.2 Score=50.37 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001007 624 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 624 ~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~ 659 (1191)
.++..-.+|-.+++.+.-.-...+.+|...+-.+|.
T Consensus 494 lEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 494 LEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666666666655553
No 60
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.75 E-value=0.035 Score=60.61 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=34.0
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.-+.. ..++..|..+..+.+.--..||. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 57999996653 44677777666666663234555 6789999999999873
No 61
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.74 E-value=9 Score=39.07 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 628 ~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
..+..|+.++...+..++.|...|.=|.++|..
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456688999999999999999999999988754
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.61 E-value=6.8 Score=51.64 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=15.6
Q ss_pred CccEEEEeeccCCCCcccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|-+.. |.-|+.||||+-.|.
T Consensus 61 g~~vN-fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILT 80 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHH
Confidence 44444 888999999998774
No 63
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.56 E-value=0.083 Score=64.09 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=57.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc------C-----CCCCChHHHHHHHHH
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------S-----SHDRGLYARCFEELF 254 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~G------s-----~~~~GIIPRale~LF 254 (1191)
..|....-|.|.-+|-. .|..||+++-+|...-++ .|.|||||||||-- - .++.-+ ..+||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTL----AaQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTL----AAQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhH----HHHHH
Confidence 45777777888888764 456778887777655443 79999999999953 1 133333 34455
Q ss_pred HhhccCcccccccceeEEEEEEechhh
Q 001007 255 DLSNSDTTATARFNFAVTVFELYNEQL 281 (1191)
Q Consensus 255 ~~i~~~~~~~~~f~V~VS~lEIYNE~V 281 (1191)
....+ -.+...+...|||+.-|.-.-
T Consensus 75 ~Efk~-fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 75 SEFKE-FFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHHHH-hCcCcceEEEeeeccccCccc
Confidence 44432 234556778999999986544
No 64
>PRK09039 hypothetical protein; Validated
Probab=93.52 E-value=11 Score=44.36 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 551 ~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
.+++.+..++.....+.+....+...++..|+.+|+.|+.|+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666677777777777777777775
No 65
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.50 E-value=4.3 Score=52.18 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=10.0
Q ss_pred hhHHHhhhCCCCcccccch
Q 001007 731 EYLTAALNDFNPEQYDNLA 749 (1191)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~ 749 (1191)
+|||| |=||+|-..-
T Consensus 599 ~~l~A----FmPdsFlrrG 613 (1243)
T KOG0971|consen 599 SLLTA----FMPDSFLRRG 613 (1243)
T ss_pred HHHHH----hCcHhhccCC
Confidence 45655 7899886543
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.49 E-value=5.3 Score=53.99 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=10.5
Q ss_pred hHHHHHHHhhhHHHHhHhcCc
Q 001007 774 EHEILAEIRDAVFAFIRKMEP 794 (1191)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~ 794 (1191)
+++=|.+-+..+...|-+|.-
T Consensus 985 ~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 985 QREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555443
No 67
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.41 E-value=1.5 Score=52.61 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 643 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ 643 (1191)
++.++.++...+++|+.|+.++..|..|+.++-.+.+...--..+ . ..+..+.+-+.....+|.-....++-+
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E----r---e~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE----R---EKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH----H---HHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 334556666677777777777777777776544443221000000 0 001112222333455666666777777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 001007 644 IERLHEENEKLFDRLTE 660 (1191)
Q Consensus 644 ieqL~eEneKL~~rl~~ 660 (1191)
++..-++.+|+++...+
T Consensus 405 aq~~~~slek~~~~~~s 421 (622)
T COG5185 405 AQGIFKSLEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777643
No 68
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.35 E-value=3.3 Score=42.06 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 001007 476 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRN 555 (1191)
Q Consensus 476 ~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ 555 (1191)
.+.+...+..++.++..|+.++..|...-..+.++...+..+... + +........++.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~-------~---------------~~~~~~~~~L~~ 75 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE-------L---------------RALKKEVEELEQ 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---------------HHHHHHHHHHHH
Confidence 344444455555555555555555555544444444333322221 1 112233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 556 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 556 ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
++.++.++.+-.-+-+.++.++++.|+..+.+++.-.+.
T Consensus 76 el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333344455556666666666666654443
No 69
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.31 E-value=6 Score=46.12 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 541 ~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
.++.....++...+..+.++....++.+..++....++..++.+|.++++.+
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555444444455555555555555555555555444
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.24 E-value=14 Score=40.45 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
.+...+..-.+|..|+..|+..+.
T Consensus 30 ~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 30 SVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555544444
No 71
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.08 E-value=9.8 Score=45.50 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 001007 575 DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 646 (1191)
Q Consensus 575 e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ieq 646 (1191)
...|..|+.+++.++.++..+.+..........+.. .+ . -++-..+.+||..++.+|+..-..
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee---~~---~---reen~rlQrkL~~e~erRealcr~ 314 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE---VD---H---REENERLQRKLINELERREALCRM 314 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh---H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777664444433222211100 00 0 134556788888888888765443
No 72
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.99 E-value=6.2 Score=51.42 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=10.2
Q ss_pred hhhhhhhhhhcHHHHHHHH
Q 001007 1067 AEDARLASLISLDGILNQV 1085 (1191)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~ 1085 (1191)
+.=.|.-+|.|.|-+-|--
T Consensus 1002 s~l~r~~~las~dl~~k~g 1020 (1195)
T KOG4643|consen 1002 SPLLRVLHLASIDLFTKTG 1020 (1195)
T ss_pred chHHHHHHHHHHHHHhccC
Confidence 3444555666666555443
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=6.7 Score=49.84 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.3
Q ss_pred HHHHhhcccccccccCCCC
Q 001007 935 RSWLAENFEFLSVTGDDAS 953 (1191)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~ 953 (1191)
-.|=|.|=.-||..-+|.+
T Consensus 820 y~wrakke~dLsFskgd~I 838 (1118)
T KOG1029|consen 820 YPWRAKKENDLSFSKGDTI 838 (1118)
T ss_pred ccccccccccccccCCCee
Confidence 4577777777777776654
No 74
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.99 E-value=9.3 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.9
Q ss_pred hhcCCccEEEEeeccCCCCccccc
Q 001007 213 SALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 213 svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+-.|+|+ -.||.||||+--+
T Consensus 21 ~f~~~~t~---IvGPNGSGKSNI~ 41 (1163)
T COG1196 21 NFSPGFTA---IVGPNGSGKSNIV 41 (1163)
T ss_pred ecCCCCeE---EECCCCCchHHHH
Confidence 33456665 4699999998766
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=92.95 E-value=15 Score=47.71 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHH
Q 001007 556 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEE 635 (1191)
Q Consensus 556 ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEE 635 (1191)
.+.++.........++..+...+..++.++++|+..+.......+.... -..+. .. .....+..+.+.
T Consensus 392 ~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~-c~~~L---------~~--~~~~el~~~~~~ 459 (880)
T PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV-CGREL---------TE--EHRKELLEEYTA 459 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCcC---------Cc--hhHHHHHHHHHH
Confidence 3333333334444555555566666666666666555543332222221 11111 11 112233345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001007 636 ELKKRDALIERLHEENEKLFDRL 658 (1191)
Q Consensus 636 eLkkrd~~ieqL~eEneKL~~rl 658 (1191)
++.....++..+.++..++-..+
T Consensus 460 ei~~l~~~~~~l~~~~~~l~~~~ 482 (880)
T PRK03918 460 ELKRIEKELKEIEEKERKLRKEL 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556656655555554444443
No 76
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.90 E-value=11 Score=47.01 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---hHHHhHHHHHHHHHHHHHHH
Q 001007 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD---LKSENYMLADKHKIEKEQNA 551 (1191)
Q Consensus 475 i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~d---L~~e~~~l~~k~k~~kE~~~ 551 (1191)
+.++...+...++.+|..|+.|+..|+..+......+..-..++........+++.+ ++.....+++..+.++.++.
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555567778888888888888887766554443333333222222223222 23333344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.++..+..+....++.-..-..++..++.|..+|+-++
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555554433322222344555555555555554
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.89 E-value=11 Score=39.34 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 538 ~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+..++..+.+++++....+....+...+......+++.....|..+...++..+.+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455556666666666666666666666666666666666666666666666655544
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.74 E-value=9.7 Score=46.82 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.9
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
..+-+|++|+|||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999765
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.59 E-value=4.4 Score=51.47 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.9
Q ss_pred HHHHHHhhccc
Q 001007 933 QIRSWLAENFE 943 (1191)
Q Consensus 933 ~~~~~~~~~~~ 943 (1191)
.+-+||||.=.
T Consensus 688 ~Le~~laekR~ 698 (1265)
T KOG0976|consen 688 HLEGWLAEKRN 698 (1265)
T ss_pred HHHHHHhhhhh
Confidence 36789988654
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.54 E-value=22 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=23.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 473 RDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 473 k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
-...+.+..++...+.+++.|+.++..|+..+
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777778888888888888888775
No 81
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.49 E-value=8.1 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=17.1
Q ss_pred eeeeccCCHHHHHHHHHHHHhhcCC
Q 001007 306 LVQEKVDNPLEFSKVLKSAFQSRGN 330 (1191)
Q Consensus 306 Lt~~~V~S~~E~~~lL~~g~~nR~~ 330 (1191)
+.+..|+...+..++.+.|.-+|-.
T Consensus 682 l~QLrcngVLEgIRicR~GfPnr~~ 706 (1930)
T KOG0161|consen 682 LNQLRCNGVLEGIRICRQGFPNRMP 706 (1930)
T ss_pred HHHhhccCcHHHHHHHHhhCccccc
Confidence 4455677777777777777776654
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.45 E-value=13 Score=42.47 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 59 QALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1191)
Q Consensus 59 ~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~ 91 (1191)
+.|..++...=++|..+..++..|..++..+..
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 446666666666777777777776666655443
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=14 Score=47.23 Aligned_cols=37 Identities=32% Similarity=0.338 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 625 d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.+..+.+..+..+..+++...+|+|-++||..-+.++
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4445555566666666666677777777776666555
No 84
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.33 E-value=7.9 Score=50.56 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=34.6
Q ss_pred CCCHHHHHHHhHHHHHHhhcccc------------------------cCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 001007 440 AANMSETLSSLNFSSRARSTVLS------------------------LGNRDTIKKWRDIANDARKELYEREKEIQDLKQ 495 (1191)
Q Consensus 440 ~~~~eETLsTLrFAsRAr~I~~~------------------------~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~ 495 (1191)
..+-+-+.-++.|.+|+-+.+-. +.....|.+++...++++.+.......+.+|..
T Consensus 250 ~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~e 329 (1195)
T KOG4643|consen 250 TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHE 329 (1195)
T ss_pred CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44555666677777777654311 111223334445555555555555566667777
Q ss_pred HHHHHHHH
Q 001007 496 EILGLRQA 503 (1191)
Q Consensus 496 Ei~~Lk~~ 503 (1191)
|+..|..+
T Consensus 330 EnstLq~q 337 (1195)
T KOG4643|consen 330 ENSTLQVQ 337 (1195)
T ss_pred HHHHHHHH
Confidence 76666544
No 85
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.30 E-value=5.9 Score=40.93 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 585 (1191)
Q Consensus 538 ~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eI 585 (1191)
.+...++.+++++..+...+.+. ..+...++..++.+|+.|+.++
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~---~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQR---KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555444444444333 3445556666677777776665
No 86
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=12 Score=46.05 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLl 561 (1191)
+++...++.++|++.+..|+.++.....+...+.++.-........++..|+...+ .++..+|+...++.++.+..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leI----alEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEI----ALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666655555544444433332211112223333333333 33445566666666666665
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 562 QLEQE------QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 562 q~eeE------lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
....+ ...++++++.++..++.+........++.
T Consensus 408 ~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrl 447 (654)
T KOG4809|consen 408 NIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRL 447 (654)
T ss_pred HhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 55677788888877777776665554443
No 87
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.25 E-value=13 Score=48.12 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLR 554 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~ 554 (1191)
++.+..|+.+|+..-+.|..++..++.+...+.+.+.... -..++-..|..++..++++++.+.+++.+++
T Consensus 405 lE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 405 LEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433333322222211 1123334445555556666665555555443
No 88
>PRK02224 chromosome segregation protein; Provisional
Probab=92.16 E-value=15 Score=47.81 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.++.++...+..++.+++..+++.+++.+.
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 632 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEK 632 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555444
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.97 E-value=20 Score=44.08 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 535 ENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 535 e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
+...+....+.++.++..+++++..+.....+....+...+..+..++.++..++..+.
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444445555555444433334444455555566666666665554443
No 90
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.90 E-value=18 Score=42.46 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 480 RKELYEREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 480 ~~el~~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
+.-+++...+.++|+-..++|+++|-..
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~ 118 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHV 118 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445556667777777777777776544
No 91
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.84 E-value=16 Score=47.42 Aligned_cols=119 Identities=19% Similarity=0.287 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHH---HHHHHH
Q 001007 476 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIE---KEQNAQ 552 (1191)
Q Consensus 476 ~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~---kE~~~q 552 (1191)
++.+..++...+.++..++.++..+.............+...+.........+|.+++.-...+..+.... ...+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665555554444433444444444444444445555544444444333322 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 553 L~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+......+...+.+++..+...+.+|..|+.+|+.|+.+|++
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455566666667777777777777777766543
No 92
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.81 E-value=13 Score=47.46 Aligned_cols=28 Identities=39% Similarity=0.489 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~ 659 (1191)
-|.-.+++||++|.||.+-.--|...+.
T Consensus 526 iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 526 ILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999988766655543
No 93
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.76 E-value=15 Score=42.97 Aligned_cols=110 Identities=24% Similarity=0.196 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH-HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK-SENYMLADKHKIEKEQNAQLRNQVAQL 560 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~-~e~~~l~~k~k~~kE~~~qL~~ql~qL 560 (1191)
.+.+...+...|+.|+..|++.+.++..++..+.+.+.+..-.......... .+...+ -.+++.++.+..++
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~l-------V~qLEk~~~q~~qL 145 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDL-------VEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHH-------HHHHHHHHHHHHHH
Confidence 3445566677777777788877777777777666655443221111111100 122222 23334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 561 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 561 lq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
....+-.-.+.++...+...++.+...|..+|+..+..
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44434444445555666777888888888888655544
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.75 E-value=7.5 Score=51.53 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=10.6
Q ss_pred eccCCCCccccc
Q 001007 225 YGQTHSGKTHTM 236 (1191)
Q Consensus 225 YGQTGSGKTyTM 236 (1191)
.|+.||||+-.+
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 699999999876
No 95
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.72 E-value=28 Score=41.63 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhhcc------CCCcccCCCCccccccccccC-CCcceEEEEEeCCCCCCHHHHHHHhHHHHH
Q 001007 391 SLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG-ESSKTLMIVNICPNAANMSETLSSLNFSSR 455 (1191)
Q Consensus 391 SLsaLg~VIsALa~------kk~hVPYRdSKLTrLLqDSLG-GNSKTlMIv~ISPs~~~~eETLsTLrFAsR 455 (1191)
+...||.||..+.+ ++.|.. | || ..-.|.+|++|-...---.-||..|-.+++
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarLr--------l----F~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARLR--------L----FGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHHh--------H----hccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 56788999988875 122211 0 11 134677788776655545566666655544
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.72 E-value=23 Score=38.82 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE 517 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qE 517 (1191)
+.+++.--++|.+|+..|+..+..+++-...+..+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e 44 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEE 44 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544444333333333
No 97
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=11 Score=45.69 Aligned_cols=86 Identities=22% Similarity=0.195 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHH
Q 001007 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLE 634 (1191)
Q Consensus 555 ~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLE 634 (1191)
..+.+|.......+.++..+.+..+..+.-+.+-+.+|++.+...+.. ........++|
T Consensus 293 ayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e---------------------~~e~~~Iqele 351 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE---------------------DEEIRRIQELE 351 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch---------------------HHHHHHHHHHH
Confidence 344555555555566666666677777766666666776655554330 11246677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 635 EELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 635 EeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.++...+++|++-.+.+.+|+..+..-
T Consensus 352 qdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 352 QDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 999999999999999999999886544
No 98
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.28 E-value=23 Score=41.51 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCCh
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDS 626 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~ 626 (1191)
+.+...++..+.++.++.+.++.+++....++...+.+-..|.++|.+......+.......+. ..+
T Consensus 126 k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf-------------~eq 192 (401)
T PF06785_consen 126 KGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF-------------VEQ 192 (401)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------ccc
Confidence 3344445555555555555555555555555555555556666556555544433221212221 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 627 s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.+..+|-.+.+-+.+.....|.-|-..|.|--.++
T Consensus 193 ~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~ 227 (401)
T PF06785_consen 193 HSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDM 227 (401)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44556667777777777887878887887764444
No 99
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.14 E-value=8.2 Score=54.18 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001007 1126 CAQRQIADARRMVEVLQ 1142 (1191)
Q Consensus 1126 ~~~~~~~~~~~~~~~l~ 1142 (1191)
||.+++.||.+-.+.++
T Consensus 1622 ~ank~~~d~~K~lkk~q 1638 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQ 1638 (1930)
T ss_pred HHHHhhHHHHHHHHhhH
Confidence 56666666666554444
No 100
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.75 E-value=11 Score=50.40 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 628 ~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.++.+++-+++-...+.++...|+..+ +|..+
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~ 698 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH
Confidence 678899999999999999998888877 55444
No 101
>PRK03918 chromosome segregation protein; Provisional
Probab=90.71 E-value=37 Score=44.24 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 001007 223 FAYGQTHSGKTHTM 236 (1191)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1191)
+-+|++|||||..+
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36899999999765
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.67 E-value=12 Score=51.79 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.2
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
++.-+|++|+|||.+|-
T Consensus 29 ~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 55668999999999884
No 103
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.56 E-value=30 Score=48.48 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccc
Q 001007 534 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAV 613 (1191)
Q Consensus 534 ~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~ 613 (1191)
.-|..|++..+...+++.++++++..+......+...+.+++.++.....++..|+.+...++.+...-.....+...
T Consensus 1229 EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~-- 1306 (1822)
T KOG4674|consen 1229 ESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDK-- 1306 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--
Confidence 344444444444444555555555555444444455555555555555555555555555555554332222111110
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 614 SSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 614 ~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
..+.++ . .-..+|++++...+..|..+.+++..+...+..
T Consensus 1307 ~~~~kL---~----~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~ 1346 (1822)
T KOG4674|consen 1307 NDYEKL---K----SEISRLKEELEEKENLIAELKKELNRLQEKIKK 1346 (1822)
T ss_pred HHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1 133456666667777777777777666644433
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.52 E-value=27 Score=48.54 Aligned_cols=12 Identities=42% Similarity=0.398 Sum_probs=7.4
Q ss_pred CccccccccccC
Q 001007 414 SMLTKVLADSLG 425 (1191)
Q Consensus 414 SKLTrLLqDSLG 425 (1191)
+.+|+.|+++|-
T Consensus 211 ~~i~~fl~~yll 222 (1486)
T PRK04863 211 SAITRSLRDYLL 222 (1486)
T ss_pred HhHHHHHHHHcC
Confidence 456666776663
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.46 E-value=2.6 Score=45.55 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
..+..+...+..+.....+++..+..++..++.++.++..|..++
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555556666666666666666666544
No 106
>PRK02224 chromosome segregation protein; Provisional
Probab=90.38 E-value=39 Score=44.22 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.4
Q ss_pred EeeccCCCCccccc
Q 001007 223 FAYGQTHSGKTHTM 236 (1191)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1191)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 34999999998764
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.18 E-value=13 Score=48.01 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
++.+.++.+++.+...|+.++.+++..+.++.
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666677777777777777666655
No 108
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.16 E-value=5.5 Score=49.29 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 563 LEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 563 ~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
.++.++.++...+++|+.++.+..+|+.++..+
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555566666666666666666666544
No 109
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.12 E-value=40 Score=42.97 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=17.0
Q ss_pred HHHhcChhHHHHhhhhhhcccCCCCEE
Q 001007 121 AEARISPLINEKKRLFNDLLTAKGNIK 147 (1191)
Q Consensus 121 ~e~r~~~~~~eRrkLhN~l~elkGnIR 147 (1191)
..+.......+|-..|+-.+++.+||.
T Consensus 167 saEK~~~yE~EREET~qly~~l~~nie 193 (786)
T PF05483_consen 167 SAEKMKKYEYEREETRQLYMDLNENIE 193 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344445556667777777777777764
No 110
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.99 E-value=10 Score=48.37 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHhhcc
Q 001007 390 KSLSALGDVLSSLTS 404 (1191)
Q Consensus 390 kSLsaLg~VIsALa~ 404 (1191)
+++.--.++|..+..
T Consensus 41 ~r~L~aeniiqdlrs 55 (1265)
T KOG0976|consen 41 KRLLDAENIIQDLRS 55 (1265)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455556665554
No 111
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.96 E-value=42 Score=45.87 Aligned_cols=28 Identities=14% Similarity=0.423 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 629 VSKKLEEELKKRDALIERLHEENEKLFD 656 (1191)
Q Consensus 629 lkkKLEEeLkkrd~~ieqL~eEneKL~~ 656 (1191)
...++..++++.+..|+++++...++.+
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~e 799 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIE 799 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3446666667777777766665554443
No 112
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.93 E-value=13 Score=37.90 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
++..+..++..|..+-..+..++
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.91 E-value=15 Score=42.81 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 541 ~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
..++..+.++.++...+........+++.+++..+..|+.+..++.+++.++.++...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777788888888888888888888888777664443
No 114
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.81 E-value=54 Score=44.02 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 001007 643 LIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 643 ~ieqL~eEneKL~~rl~~k 661 (1191)
++|+|..|.+||+...-+|
T Consensus 1690 rAe~L~~eA~~Ll~~a~~k 1708 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQANEK 1708 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666667777776665444
No 115
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.76 E-value=4.4 Score=44.64 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEAN 508 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~ 508 (1191)
..+.+|+.|+..++.++....
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655555443
No 116
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.61 E-value=38 Score=42.41 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHhhHHHhHHHHHHHHHHHHHHHHH
Q 001007 477 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS---FTLQSDLKSENYMLADKHKIEKEQNAQL 553 (1191)
Q Consensus 477 ~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~---~eLq~dL~~e~~~l~~k~k~~kE~~~qL 553 (1191)
..++..+++..++..+++.++..|+.++..+..+.....+++....+.. ...-.+++.+...+....+.+.++...+
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777777777666666555554444443222222 2223344555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 554 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 554 ~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
..+...+.......+.++.+--.--..++.+++.|..+|.
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6666666655555555544444444566666666665554
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.56 E-value=45 Score=40.57 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
...++.+|++++.++..++.++.
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 118
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.51 E-value=23 Score=45.39 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 624 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 624 ~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.++...-.....++........+|.+|+++|...+...
T Consensus 583 e~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 583 EQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566667777777777788889999888888665
No 119
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=11 Score=48.48 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 568 KMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 568 k~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+++.....+++.|.++.+-+.++|.+
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k 762 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNK 762 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566666555555555543
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.37 E-value=20 Score=41.74 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQ 502 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~ 502 (1191)
.+..++.+...|+.|...|+.
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 333444444555555444443
No 121
>PRK06620 hypothetical protein; Validated
Probab=89.32 E-value=0.21 Score=54.47 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=34.9
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCcc---EEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN---VSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN---~~IfAYGQTGSGKTyTM~ 237 (1191)
+..|+||..+...+ +...|..+..+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 36789999776554 45577776554432 1343 358899999999999985
No 122
>PRK12377 putative replication protein; Provisional
Probab=89.31 E-value=0.24 Score=55.55 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=36.5
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1191)
.+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3566554445667778887777887776654 3577799999999999853
No 123
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.22 E-value=25 Score=37.48 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+..++.......+.+...+.+++
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444443333
No 124
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.15 E-value=0.28 Score=61.36 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=36.8
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..|+||..+.... +..+|..+..+++..-.+||. ||-||.+|+||||.+.
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 46799998664333 445666555566554456786 7889999999999984
No 125
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.12 E-value=27 Score=46.03 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=9.0
Q ss_pred hhhHHhchHHhHhhhcCCc
Q 001007 200 QAELFSDVQPFVQSALDGY 218 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGy 218 (1191)
+...|+....+++++..|.
T Consensus 369 ~s~~~e~~e~~~eslt~G~ 387 (1174)
T KOG0933|consen 369 DSKLLEKAEELVESLTAGL 387 (1174)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3344444445555554443
No 126
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.93 E-value=16 Score=50.20 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=13.0
Q ss_pred HHHHHHHhhhHHHHhHhcCcccchhh
Q 001007 775 HEILAEIRDAVFAFIRKMEPTRVMDT 800 (1191)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1191)
++=+.||-.-+-.+.++.=+..+.|+
T Consensus 1136 ~~~~~~~n~~~~~~w~~~~~~~~~~~ 1161 (1311)
T TIGR00606 1136 SMKMEEINKIIRDLWRSTYRGQDIEY 1161 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 33445555555555555544444444
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.90 E-value=0.27 Score=54.15 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=33.0
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.-+.. .+...+..+..+... .+ ...++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~~--~~-~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALRQ--EH-SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHhC--CC-CCeEEEECCCCCCHHHHHH
Confidence 56788876654 566677766554431 12 2368899999999999984
No 128
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.85 E-value=29 Score=39.48 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
-|.++|+..+.+|++++++++.+-+-+..+
T Consensus 282 iLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 282 ILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666677889999999999888877555
No 129
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.80 E-value=24 Score=48.58 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=4.0
Q ss_pred HHHhhhCCC
Q 001007 733 LTAALNDFN 741 (1191)
Q Consensus 733 ~~~~~~~~~ 741 (1191)
|-.|+|.|.
T Consensus 1127 ~~~~~~~~~ 1135 (1311)
T TIGR00606 1127 LDQAIMKFH 1135 (1311)
T ss_pred HHHHHHHHH
Confidence 334444443
No 130
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.76 E-value=53 Score=44.56 Aligned_cols=44 Identities=18% Similarity=0.033 Sum_probs=27.0
Q ss_pred hHHHHH--HHHhhcccccccccC----CCCCCcccchhhhHHhhhhhhhc
Q 001007 930 LQRQIR--SWLAENFEFLSVTGD----DASGGTTGQLELLSTAIMDGWMA 973 (1191)
Q Consensus 930 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 973 (1191)
++|+++ .|+.==+-|++++++ ....++-|++=.+-..++=.|+.
T Consensus 598 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~ 647 (1109)
T PRK10929 598 AMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVT 647 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHH
Confidence 344444 254433444555554 55677889998888877766664
No 131
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.73 E-value=1 Score=52.76 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45888999999999887
No 132
>PRK06893 DNA replication initiation factor; Validated
Probab=88.72 E-value=0.3 Score=53.53 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=32.2
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..++||..++... ...+ ..+...+-.++|.+++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 5689999886543 2222 122222334678889999999999999984
No 133
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.56 E-value=26 Score=40.92 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=37.5
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 530 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 530 ~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
..|.++...+.-.++.++.++.++...+.++.....+..-.+......+..|+.++..|+.+|.+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455556666666666666666555554445555566666666666666666553
No 134
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.52 E-value=0.22 Score=57.33 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=26.6
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|++..+.+--++.|+.-|+||||||.||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 57788888899999999999999999998
No 135
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.51 E-value=46 Score=37.16 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 573 QRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
+.......+..+|..|+.+|.+.-.+
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~R 191 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENR 191 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666554444
No 136
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.46 E-value=33 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=13.1
Q ss_pred HHHHHhhhhhHHHHHHHHhhcc
Q 001007 383 TDVLHVMKSLSALGDVLSSLTS 404 (1191)
Q Consensus 383 kEa~~INkSLsaLg~VIsALa~ 404 (1191)
.+-..|.+.|.+|..-|..|..
T Consensus 684 ~~~~~~q~el~~le~eL~~le~ 705 (1174)
T KOG0933|consen 684 KELRAIQKELEALERELKSLEA 705 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777666666643
No 137
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.38 E-value=53 Score=42.98 Aligned_cols=13 Identities=38% Similarity=0.651 Sum_probs=6.7
Q ss_pred CChHHHHHHHHHH
Q 001007 243 RGLYARCFEELFD 255 (1191)
Q Consensus 243 ~GIIPRale~LF~ 255 (1191)
.||+--++..||.
T Consensus 199 ~~lY~y~vkmlfk 211 (980)
T KOG0980|consen 199 SGLYDYLVKMLFK 211 (980)
T ss_pred hhHHHHHHHHHHH
Confidence 3555555555554
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.37 E-value=18 Score=43.84 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+.++..+.+.+.+|..|+.++..|-
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3344455555555555555555554
No 139
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.33 E-value=47 Score=37.07 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
.+..++..|.....+........+..+..|+.+|..|+..|.
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433333344444444444444444444444443
No 140
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.26 E-value=0.39 Score=53.78 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=35.4
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..+||........|..++..+..+++.+..|++ .++-||.+|+||||.+.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHH
Confidence 345665443345677788777777777655544 67889999999999984
No 141
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.07 E-value=25 Score=41.09 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 542 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 542 k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
.++..++++.+....+........+.+.+++..+..|+....+..+++.++.++...
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777778888888888888888888888888888775543
No 142
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.01 E-value=26 Score=41.72 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=17.6
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 470 KKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 470 kk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
+.|+.-.+................+..+.+|...+...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~ 253 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT 253 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45555554444444444444444444444444444433
No 143
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.81 E-value=47 Score=38.82 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 478 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL 514 (1191)
Q Consensus 478 ~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l 514 (1191)
+....+......-..+..++..|+..+....++....
T Consensus 118 dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r 154 (309)
T PF09728_consen 118 DIQAQMEEQSERNIKLREENEELREKLKSLIEQYELR 154 (309)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444556677777777777666665543
No 144
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.79 E-value=71 Score=38.44 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=6.9
Q ss_pred CCCcccccccccc
Q 001007 852 RSPVHYVDEKIQG 864 (1191)
Q Consensus 852 ~~~~~~~~~~~~~ 864 (1191)
|+|+---|.+.+|
T Consensus 469 ~~aiAaedt~~~G 481 (499)
T COG4372 469 RSAIAAEDTVGPG 481 (499)
T ss_pred ccCCCCCCCcCCC
Confidence 4455445555555
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.77 E-value=0.34 Score=58.44 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=35.6
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..|+||.-+.. ..+...|..+..+.++- ..||. +|-||++|+||||.+.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~~-~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKNP-GRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhCc-CCCCe-EEEEcCCCCcHHHHHH
Confidence 467999997643 45566777655555431 23675 8999999999999984
No 146
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.76 E-value=62 Score=40.98 Aligned_cols=84 Identities=21% Similarity=0.227 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHH
Q 001007 558 AQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEEL 637 (1191)
Q Consensus 558 ~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeL 637 (1191)
..+...+...+.+++..+..|..++..+.....++-........ +...-...-.-...++
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de--------------------e~~~k~aev~lim~eL 244 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE--------------------EVAAKAAEVSLIMTEL 244 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--------------------hhHHHHHHHHHHHHHH
Confidence 33334444555666666666666666666555555433332111 0011112222445566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 638 KKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 638 kkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
....+.|..+++|++.|+.++..-
T Consensus 245 e~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 245 EDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999999999997544
No 147
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.53 E-value=38 Score=37.16 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 572 QQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 572 qq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+...++..++.+|..|+..+.+
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555443
No 148
>PRK05642 DNA replication initiation factor; Validated
Probab=87.48 E-value=0.4 Score=52.88 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=31.0
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.-+.. .+...+..+..+.+..-+.-+..++-||.+|+||||-+.
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcC--ChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 56899997743 234444444433332111112457889999999999984
No 149
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=3.6 Score=46.66 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.4
Q ss_pred cEEEEeeccCCCCcccc
Q 001007 219 NVSIFAYGQTHSGKTHT 235 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyT 235 (1191)
--.++-||+.|+|||..
T Consensus 181 PKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLL 197 (404)
T ss_pred CcceEEecCCCCchhHH
Confidence 34578899999999743
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.38 E-value=0.39 Score=56.84 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=34.4
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..|+||.... ...+...|..+..+...--..||. ++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n~-l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCCe-EEEECCCCCcHHHHHH
Confidence 46799998443 345566776665555542223454 6779999999999983
No 151
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.37 E-value=44 Score=43.62 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
|-..+++...-.+++..++..+|..++..
T Consensus 511 K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 511 KKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555666666667777777777766644
No 152
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.24 E-value=1.3 Score=53.02 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=31.6
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC--C--ccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PLV~-svLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
..++|+.|-+.+..-+++.+.| .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4567777777655555554444 34432 1222 2 2345788999999999887
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.09 E-value=27 Score=39.51 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQ---SDLKSENYMLADKHKIEKEQNAQLRNQVAQL 560 (1191)
Q Consensus 484 ~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq---~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qL 560 (1191)
.++...+.+++.+...-+..|.........|..+.+........|+ ..+..++..|........+....|..++...
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777766666666666555555544443333222222 3345555555555555555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001007 561 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1191)
Q Consensus 561 lq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~ 597 (1191)
......+......++.+...++.++...+..+.+.+.
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777888888888888888877766555443
No 154
>PRK08116 hypothetical protein; Validated
Probab=86.94 E-value=0.29 Score=55.28 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=36.9
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcC--CccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..++||.-. .+..+...|..+...++++.. ..|..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 456777644 355666677777777777643 345568999999999999984
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.89 E-value=32 Score=41.90 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
++...++....+..+..+|++|+.||+..
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455566777888888888888888643
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.62 E-value=0.44 Score=57.33 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=34.9
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
...|+||.... ...+...|..+..+.+.--..||. +|-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~~-l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCCe-EEEECCCCCCHHHHHH
Confidence 46789998443 235566777665555543234554 7779999999999984
No 157
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.42 E-value=0.5 Score=50.59 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=33.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.... ..+..+++.+..++. .+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 5578888773 255666666655543 4556789999999999999883
No 158
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.35 E-value=76 Score=42.97 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=10.2
Q ss_pred CCCHHHHHHHhHHHHH
Q 001007 440 AANMSETLSSLNFSSR 455 (1191)
Q Consensus 440 ~~~~eETLsTLrFAsR 455 (1191)
..++.++++.|..+..
T Consensus 583 ~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 583 NRDLEDKLSLLEESKS 598 (1317)
T ss_pred cccHHHHHHHHHHHHH
Confidence 4566777777766643
No 159
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.30 E-value=1.1e+02 Score=39.23 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 545 ~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
.+++++.++.+....+-...-++...++..+.....|..++.+++.++
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l 211 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKL 211 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443444444444444444555555554433
No 160
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.29 E-value=84 Score=38.70 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 474 DIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 474 ~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
.....+..++...+.+|+.|+..+..|+.++
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445566677777778888888777777665
No 161
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.17 E-value=1.5 Score=51.97 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-||++|+|||+..
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 45888999999999876
No 162
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.97 E-value=0.4 Score=58.40 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1191)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4456677888899999999999999999963
No 163
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.85 E-value=45 Score=46.87 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 535 ENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1191)
Q Consensus 535 e~~~l~~k~k~~kE~~~qL~~ql~qLl 561 (1191)
++..+...+...+..+.++...+.++.
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444433
No 164
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=3.6 Score=46.71 Aligned_cols=123 Identities=19% Similarity=0.327 Sum_probs=63.2
Q ss_pred hcccCCCCEEEEEeeCCCCCCC--CC---ceEeecCCcEEEEecCCCcc------CCCCceeecceeeCCCCChhhHHhc
Q 001007 138 DLLTAKGNIKVFCRTRPLFEDE--GP---SVVEFTDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSD 206 (1191)
Q Consensus 138 ~l~elkGnIRV~~RVRPl~~~E--~~---svV~~~d~~tI~v~~~~~~~------~~~~k~F~FD~VF~p~asQeeVFee 206 (1191)
.++-....-.-|||+-...+.| ++ ..++..++..+-+.++.... +..+-...+..|=+-+..-++|-+.
T Consensus 91 ~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeirea 170 (408)
T KOG0727|consen 91 AIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREA 170 (408)
T ss_pred ceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHH
Confidence 3333333344577876655544 11 11222333334444332211 1112334445555555555666666
Q ss_pred h-HHhHhhhcC---Ccc--EEEEeeccCCCCccccccc--------------CC---CCCChHHHHHHHHHHhhccC
Q 001007 207 V-QPFVQSALD---GYN--VSIFAYGQTHSGKTHTMEG--------------SS---HDRGLYARCFEELFDLSNSD 260 (1191)
Q Consensus 207 V-~PLV~svLd---GyN--~~IfAYGQTGSGKTyTM~G--------------s~---~~~GIIPRale~LF~~i~~~ 260 (1191)
| -|+...-+- |.+ -.|+.||+.|+|||...-. +. .--|==||.++++|....+.
T Consensus 171 velplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 171 VELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred HhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 5 365554331 222 3478899999999754321 11 01255599999999876543
No 165
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=85.55 E-value=50 Score=39.53 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 516 NEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQ 559 (1191)
Q Consensus 516 qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~q 559 (1191)
.|+.+.......++++.+.-...+...++..+.+++-+.++..+
T Consensus 396 EEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 396 EEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555444
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.47 E-value=7.4 Score=49.82 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 540 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 540 ~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
...+..++-+++.++....++..+.++++.+++++.+....+.+++.-|+.||.
T Consensus 663 K~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 663 KGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444455555666666666666677777777777777777777777777774
No 167
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.40 E-value=23 Score=41.34 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALKEANDQ 510 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~~~~~q 510 (1191)
+..+.+.++.|++|+..|+.+.......
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4466777777777777777765544433
No 168
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.32 E-value=0.66 Score=50.23 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=32.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.+++.. ...++..+..++.. .+.+..++-||.+||||||.+.
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 568899988322 33455555555442 2344578899999999999883
No 169
>PRK09087 hypothetical protein; Validated
Probab=85.16 E-value=0.55 Score=51.70 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=32.1
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||..+..++. ..+|..+... ..-.|-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 56889998864443 4477644322 22235568999999999999985
No 170
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.86 E-value=67 Score=35.35 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEANDQCV 512 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~~q~~ 512 (1191)
..|..|++++..++......+..+.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ 51 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMA 51 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766554444333
No 171
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.57 E-value=1e+02 Score=42.41 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHh
Q 001007 1130 QIADARRMVEVLQQ 1143 (1191)
Q Consensus 1130 ~~~~~~~~~~~l~~ 1143 (1191)
.+...+.++++|+.
T Consensus 1072 ~~~~l~~l~~~l~~ 1085 (1201)
T PF12128_consen 1072 YVNALRELLDILPS 1085 (1201)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555555555
No 172
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.55 E-value=56 Score=34.25 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEAN 508 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~ 508 (1191)
.+-..|+..+..|+..|...+
T Consensus 17 ~e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 173
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.49 E-value=0.34 Score=56.41 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=26.8
Q ss_pred hhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 201 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 201 eeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..+++.+...++++-.+. -.++-||+||+||||.+.
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 345555566788776554 458889999999999885
No 174
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.44 E-value=0.6 Score=56.55 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=33.4
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.|+||..+... ++...|..+..++.+-=..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 59999966544 455677655555443212355 47889999999999984
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.41 E-value=0.59 Score=55.96 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=31.6
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..|+||....... +...|.....+-++-=.-||- +|-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~~-N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGPS-NRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCCc-hHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHH
Confidence 46799998655443 444444332222221112554 7889999999999994
No 176
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.14 E-value=1.5e+02 Score=38.72 Aligned_cols=76 Identities=34% Similarity=0.478 Sum_probs=46.2
Q ss_pred hhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhc---------------HHHHHHHH
Q 001007 1021 SQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLIS---------------LDGILNQV 1085 (1191)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 1085 (1191)
.||-||||-|. -||..|-+ +|| +|. -|--| | +.=||+|=| |-.=||..
T Consensus 590 eqilKLKSLLS---TKREQIaT-LRT---VLK--------ANKqT-A-EvALanLKsKYE~EK~~v~etm~kLRnELK~L 652 (717)
T PF09730_consen 590 EQILKLKSLLS---TKREQIAT-LRT---VLK--------ANKQT-A-EVALANLKSKYENEKAMVSETMMKLRNELKAL 652 (717)
T ss_pred HHHHHHHHHHH---HHHHHHHH-HHH---HHH--------HHHHH-H-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 48999999986 47777643 343 111 01122 2 344666543 33334444
Q ss_pred H-HHHhhccccchhhhhHhHHHhhHHHHH
Q 001007 1086 K-DAVRQSSVNTLSRSKKKAMLTSLDELA 1113 (1191)
Q Consensus 1086 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1113 (1191)
| |.---+|+..+++.+=-.|..-||++.
T Consensus 653 KEDAATFsSlRamFa~RCdEYvtQldemq 681 (717)
T PF09730_consen 653 KEDAATFSSLRAMFAARCDEYVTQLDEMQ 681 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 345567888888888888888888873
No 177
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.99 E-value=11 Score=40.75 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 544 k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
..+..++..++.++.++.....+....++.+.+++..|+-++..++.++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555554445555555555555555555555555444
No 178
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.90 E-value=83 Score=37.01 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001007 636 ELKKRDALIERLHEENEKLFDR 657 (1191)
Q Consensus 636 eLkkrd~~ieqL~eEneKL~~r 657 (1191)
++......+..+......+..+
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.87 E-value=41 Score=37.90 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 535 ENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 535 e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
+...+.+.++.....++.++..+.+...........+..+..+...|..+++++..+
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555556666666655555555555555555566666666665544
No 180
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.78 E-value=98 Score=36.41 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 632 KLEEELKKRDALIERLHEE 650 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eE 650 (1191)
.++.++...+..+++++..
T Consensus 250 ~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 250 EAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 181
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.62 E-value=82 Score=35.37 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
+..+...+.+++.+...|+.++.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 182
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.50 E-value=44 Score=36.56 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 549 ~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
+...+..++.+.......++..+.+++..|..++.+...|..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.33 E-value=21 Score=41.74 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 558 AQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 558 ~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
.+..+.......++.+.+++.+.+..++.....++....+.
T Consensus 95 ~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 95 EEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555566666667777777777777766554444
No 184
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=82.87 E-value=56 Score=40.45 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 480 RKELYEREKEIQDLKQEILGLRQ 502 (1191)
Q Consensus 480 ~~el~~le~eI~~Lk~Ei~~Lk~ 502 (1191)
...+...++++..|+.+..-|+.
T Consensus 165 ~ekLk~~~een~~lr~k~~llk~ 187 (596)
T KOG4360|consen 165 QEKLKPLEEENTQLRSKAMLLKT 187 (596)
T ss_pred HhhcCChHHHHHHHHHHHHHHHh
Confidence 33344444455555555444443
No 185
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.39 E-value=1.5e+02 Score=39.66 Aligned_cols=19 Identities=37% Similarity=0.233 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHhhcCCc
Q 001007 313 NPLEFSKVLKSAFQSRGND 331 (1191)
Q Consensus 313 S~~E~~~lL~~g~~nR~~~ 331 (1191)
+-.+++.+|..+.-.|.+.
T Consensus 117 tk~evvnLLESAGFSrsNP 135 (1200)
T KOG0964|consen 117 TKGEVVNLLESAGFSRSNP 135 (1200)
T ss_pred cHHHHHHHHHhcCcccCCC
Confidence 4568899998776555543
No 186
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.28 E-value=66 Score=37.54 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 487 EKEIQDLKQEILGLRQA 503 (1191)
Q Consensus 487 e~eI~~Lk~Ei~~Lk~~ 503 (1191)
..+|..|+.|+..++..
T Consensus 5 q~eia~LrlEidtik~q 21 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQ 21 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544443
No 187
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=82.12 E-value=1.6e+02 Score=37.59 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 477 NDARKELYEREKEIQDLKQEILGLRQALKEANDQ 510 (1191)
Q Consensus 477 ~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q 510 (1191)
+-+..++......|..|+.|+..|+.++...+..
T Consensus 238 ~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 238 SLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344566667778888888888888888766543
No 188
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.83 E-value=1.4e+02 Score=40.52 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 637 LKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 637 Lkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
|..+.++|-.|+.+.+.+.+-|..+
T Consensus 1726 L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1726 LEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 3344445555566666666666555
No 189
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.75 E-value=25 Score=41.08 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 564 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~e 564 (1191)
..+.+++.|+.|...+.++|...+.+...+.+++.. ++...+..+++..+.......+....
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~------------------le~e~~~l~~eE~~~~~~~n~~~~~l 108 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEE------------------LEEELEELDEEEEEYWREYNELQLEL 108 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544444433333322 11122222233334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.+...+....+..++..++++..|+
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777777776666
No 190
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=81.66 E-value=88 Score=38.18 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
..-++-+.+.++..++.+++--..|+++....
T Consensus 237 ~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 237 FQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445667777777776666666665444
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.53 E-value=24 Score=44.31 Aligned_cols=24 Identities=8% Similarity=0.390 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 566 EQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 566 Elk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.++-++.+...+++.|+++++.++
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555554
No 192
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.52 E-value=62 Score=38.71 Aligned_cols=95 Identities=12% Similarity=0.246 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 493 LKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQ 572 (1191)
Q Consensus 493 Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlq 572 (1191)
.+.-...+...+.....++..+..++.+... .+.+....++..++.+..+..+.++++.++.+...+....+.
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~le-------kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLE-------KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333444444444444444444444322 233444445555555555555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+..++..+..+++..+.++.+
T Consensus 298 ~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766643
No 193
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.51 E-value=1.2e+02 Score=39.60 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.++-+++....+.+-+...+.|++.+|..|+.-...|......
T Consensus 512 ~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 512 SLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445557778888999998888777777655443
No 194
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.45 E-value=0.96 Score=52.16 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=25.8
Q ss_pred ChhhHHhchHHhHhhhcC-CccEEEEeeccCCCCccccc
Q 001007 199 GQAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLd-GyN~~IfAYGQTGSGKTyTM 236 (1191)
..++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344444445445555454 45568999999999999987
No 195
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.35 E-value=71 Score=33.08 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 630 SKKLEEELKKRDALIERLHE 649 (1191)
Q Consensus 630 kkKLEEeLkkrd~~ieqL~e 649 (1191)
..+.+-++++++.++++|++
T Consensus 128 ~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655554443
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.34 E-value=21 Score=39.42 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 478 DARKELYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 478 ~l~~el~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
.++..+..+++++.+|+.++..+.....
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455666777777777777777776654
No 197
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.90 E-value=1.5e+02 Score=37.94 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhcc
Q 001007 1134 ARRMVEVLQQMRS 1146 (1191)
Q Consensus 1134 ~~~~~~~l~~~~~ 1146 (1191)
|.+++..|++|.+
T Consensus 575 AqqImqLL~eiQn 587 (617)
T PF15070_consen 575 AQQIMQLLQEIQN 587 (617)
T ss_pred HHHHHHHhHhcCC
Confidence 3344555555543
No 198
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.79 E-value=1.1 Score=50.44 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=34.7
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1191)
|.|..+-..+..+..+|..+..+++.+-.|.| ++-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 44333334455788888888888777775555 45699999999998853
No 199
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.60 E-value=1.6e+02 Score=36.80 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 481 KELYEREKEIQDLKQEILGLRQALKEANDQCV 512 (1191)
Q Consensus 481 ~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~ 512 (1191)
.++.....++..|+..+..|+..|......+.
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~ 326 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELE 326 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 200
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.56 E-value=80 Score=33.18 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 534 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 534 ~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
++...+....+..++++.+|......+...++..... .-+..+.+...+..|..+++
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e---k~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE---KVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555666666666555555444433222 23334444455555555543
No 201
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.50 E-value=1.6e+02 Score=37.94 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=38.9
Q ss_pred chhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhcHHHHHH-HHHHHHhhc
Q 001007 1018 EDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILN-QVKDAVRQS 1092 (1191)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1092 (1191)
|.+.-|-++|-.||-++|+-.-+||-|--- ---+|+-|| -|..|.++|| |+.+++++.
T Consensus 901 ek~~~~p~~~~~ledL~qRy~a~LqmyGEk----------------~Ee~EELrl-Dl~dlK~mYk~QIdeLl~~~ 959 (961)
T KOG4673|consen 901 EKADRVPGIKAELEDLRQRYAAALQMYGEK----------------DEELEELRL-DLVDLKEMYKEQIDELLNKI 959 (961)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhcch----------------HHHHHHHHh-hHHHHHHHHHHHHHHHHhcc
Confidence 456678899999999999999999876321 123566665 4666666665 555555543
No 202
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=80.46 E-value=65 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
...++..+..+|..++.++..++..+..
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555554443
No 203
>PRK08727 hypothetical protein; Validated
Probab=80.30 E-value=0.91 Score=49.99 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=27.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGy-N~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.-+.... + ....+..+. .|+ .-.|+-||++||||||.+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQALA----AGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHHH----hccCCCeEEEECCCCCCHHHHHH
Confidence 4678888664433 2 222222222 233 2358999999999999984
No 204
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.21 E-value=1.3e+02 Score=35.29 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 487 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE 566 (1191)
Q Consensus 487 e~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeE 566 (1191)
...++.|..++..++............+-++.++....+.+ +-.......++.+.+-..+.+.....++
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k-----------~~~~~De~Rkeade~he~~ve~~~~~~e 225 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIK-----------LFEEADELRKEADELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555666666655555555555454444433222222 2222223333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+...+......|..+...|..|+
T Consensus 226 ~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 226 LHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555444
No 205
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.17 E-value=89 Score=33.49 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001007 575 DSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 575 e~eIe~Lq~eIeeLE~qL 592 (1191)
+.+|..++.+|+.++-++
T Consensus 137 ~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 137 DTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666766666544
No 206
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.99 E-value=31 Score=39.70 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQA 503 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~ 503 (1191)
+.+.+.||.+|+.++.++++.
T Consensus 84 l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 84 LHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 207
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.95 E-value=22 Score=42.68 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHhHhcCcccchhhhhhh
Q 001007 787 AFIRKMEPTRVMDTMLVS 804 (1191)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~ 804 (1191)
-.|+.||-|..|-.||--
T Consensus 300 kL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 300 KLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 467788888888887753
No 208
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.94 E-value=1.5 Score=51.26 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=24.9
Q ss_pred hhhHHhchHHhHhhhcC-CccEEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLd-GyN~~IfAYGQTGSGKTyTM 236 (1191)
-++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444445445544443 44566889999999999987
No 209
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.88 E-value=0.99 Score=45.78 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=21.9
Q ss_pred hhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCccccccc
Q 001007 200 QAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdG-yN~~IfAYGQTGSGKTyTM~G 238 (1191)
|.++...+ ++.+-.+ .+.-++..++||||||++|..
T Consensus 8 Q~~ai~~i---~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIARI---INSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHH---HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHH---HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 44544443 3333333 344455667999999999963
No 210
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.82 E-value=1.6e+02 Score=36.31 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+.--+.+.+.+++.|+..-.+||
T Consensus 451 mdk~LskKeeeverLQ~lkgelE 473 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELE 473 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Confidence 34445556666666665555554
No 211
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.75 E-value=97 Score=40.05 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 541 ~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
...+.++.+.+....++.++.....+...++.........++.++..|+.++.
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555566666666666666664
No 212
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.39 E-value=0.97 Score=52.19 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=35.2
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCccccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdG-yN~~IfAYGQTGSGKTyTM~G 238 (1191)
..+||.+-..+..+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4566665433446666777666677766543 234588999999999999954
No 213
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=79.32 E-value=1.5e+02 Score=37.58 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001007 568 KMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1191)
Q Consensus 568 k~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~ 599 (1191)
+.+++.++...+.....+.++..++...+..-
T Consensus 516 ~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~ 547 (607)
T KOG0240|consen 516 KSELQSLQEPSEHQSKRITELLSELRKDLGEI 547 (607)
T ss_pred HHHHHhhhhcccchhHHHHHHHHHHHhhhccc
Confidence 34444555555555566777776666544443
No 214
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.25 E-value=74 Score=42.56 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 624 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 624 ~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
....++..+++++++..+..++++...+.+|...+++.
T Consensus 398 d~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 398 DHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466788999999999999999999999999998776
No 215
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=79.21 E-value=0.61 Score=59.47 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 625 DSSAVSKKLEEELKKRDALIERLHEENEKLF 655 (1191)
Q Consensus 625 d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~ 655 (1191)
+......+++.++++....++.+.++.+.+.
T Consensus 381 ~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 381 EESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555544443
No 216
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.21 E-value=1.1e+02 Score=38.54 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=8.4
Q ss_pred HHHhhhCCCCcccc
Q 001007 733 LTAALNDFNPEQYD 746 (1191)
Q Consensus 733 ~~~~~~~~~~~~~~ 746 (1191)
...||.-++|--|+
T Consensus 542 ~~~alE~vePG~~~ 555 (569)
T PRK04778 542 IATALEKVEPGVTK 555 (569)
T ss_pred HHHHHHhhCCcHHH
Confidence 55666666665554
No 217
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.17 E-value=1e+02 Score=38.26 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLl 561 (1191)
..+.+...++.+++|+..|+.+-.-...+-. ++ +..+ ..+..++.++....+.+.....+.+..+-+++.+..
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~llk~Et~-~~-~~ke-----q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~ 232 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLLKTETL-TY-EEKE-----QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQ 232 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhc-ch-hHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777787777765432221111 00 1111 122333444444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
+....+-.++..++.++..+.-+.+++...|
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666666666666666555
No 218
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=79.11 E-value=70 Score=36.86 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE 589 (1191)
.++.++..++.+|+.|+
T Consensus 281 ~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34566666666666653
No 219
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.00 E-value=69 Score=40.02 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 478 DARKELYEREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 478 ~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
++.+.+.+++.+....+.|+..+++.+.+.
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666443
No 220
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=78.93 E-value=92 Score=35.68 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 537 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 537 ~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
..++-++.+.+...++++.....|..-++++.+.++.-+++|--|+.++++-+.++....+.
T Consensus 239 a~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 239 AELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777777777777777777777777777777777777766554443333
No 221
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=78.80 E-value=46 Score=38.77 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 635 EELKKRDALIERLHEENEKLFDRL 658 (1191)
Q Consensus 635 EeLkkrd~~ieqL~eEneKL~~rl 658 (1191)
+++...-.++...|++-.++|+..
T Consensus 179 eki~~la~eaqe~he~m~k~~~~~ 202 (294)
T COG1340 179 EKIQELANEAQEYHEEMIKLFEEA 202 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555544
No 222
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.72 E-value=78 Score=39.86 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=16.2
Q ss_pred hHHHHHHHhhhHHHHhHhcCcccchhhh
Q 001007 774 EHEILAEIRDAVFAFIRKMEPTRVMDTM 801 (1191)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1191)
-++|=+.+..|-.-| |.-+=.+.+|+-
T Consensus 516 ~~~V~~~f~~Ae~lF-~~~~Y~~al~~~ 542 (569)
T PRK04778 516 NEEVAEALNEAERLF-REYDYKAALEII 542 (569)
T ss_pred CHHHHHHHHHHHHHH-HhCChHHHHHHH
Confidence 345555566666667 766665555553
No 223
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.16 E-value=2.3e+02 Score=37.07 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 001007 543 HKIEKEQNAQLRNQVAQLLQLEQE---QKMQIQQRDSTIKTLQAKINSI 588 (1191)
Q Consensus 543 ~k~~kE~~~qL~~ql~qLlq~eeE---lk~qlqq~e~eIe~Lq~eIeeL 588 (1191)
...+.++|..|+.++.-+.+-..+ ++.++..++++++.|+.+++++
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777654332 4444444444444444444443
No 224
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.10 E-value=1e+02 Score=32.89 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 631 KKLEEELKKRDALIERLHEENEKL 654 (1191)
Q Consensus 631 kKLEEeLkkrd~~ieqL~eEneKL 654 (1191)
.+..+++..+...|..++...+-+
T Consensus 148 ~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 148 DKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555665566555554443
No 225
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=77.99 E-value=1.2e+02 Score=33.54 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAW 522 (1191)
Q Consensus 475 i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~ 522 (1191)
++.+....+...-.||..|++.+.+|+..-++..+-|-.+..+-++..
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgr 89 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGR 89 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhH
Confidence 333444444455566777777777776666666555555555555433
No 226
>PRK08181 transposase; Validated
Probab=77.96 E-value=1.1 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=17.5
Q ss_pred CCccEEEEeeccCCCCccccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~G 238 (1191)
.|+| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 78899999999999864
No 227
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.86 E-value=66 Score=42.75 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.5
Q ss_pred EeeccCCCCcccccc
Q 001007 223 FAYGQTHSGKTHTME 237 (1191)
Q Consensus 223 fAYGQTGSGKTyTM~ 237 (1191)
|-.|+.||||+..+.
T Consensus 46 mIiGpNGSGKSSiVc 60 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVC 60 (1072)
T ss_pred eEECCCCCCchHHHH
Confidence 567999999998764
No 228
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=77.77 E-value=1.4e+02 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.+.++..+++.+.-.|..|. .+..+-+++
T Consensus 161 ~llesvqRLkdEardlrqel-avr~kq~E~ 189 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQEL-AVRTKQTER 189 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhccC
Confidence 33444444444444444443 233333444
No 229
>PRK01156 chromosome segregation protein; Provisional
Probab=77.72 E-value=2.5e+02 Score=37.21 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.1
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567999999999774
No 230
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.18 E-value=81 Score=40.59 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQ 510 (1191)
Q Consensus 475 i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q 510 (1191)
..+++..++.+.+.++..+++.+..|...|...+.+
T Consensus 92 ~ndklE~~Lankda~lrq~eekn~slqerLelaE~~ 127 (916)
T KOG0249|consen 92 LNDKLENELANKDADLRQNEEKNRSLQERLELAEPK 127 (916)
T ss_pred chHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHh
Confidence 344555556666666666666666666655544443
No 231
>PRK06526 transposase; Provisional
Probab=77.12 E-value=1.2 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.2
Q ss_pred CCccEEEEeeccCCCCccccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~G 238 (1191)
.+.| |+-||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3555 68899999999999864
No 232
>PRK11281 hypothetical protein; Provisional
Probab=77.01 E-value=2.4e+02 Score=38.72 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+..+.++++.+..++.|+..++..+.+..+
T Consensus 229 ~d~~~~~~~~~~~~~~~lq~~in~kr~~~se 259 (1113)
T PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKRLTLSE 259 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777765544443
No 233
>PLN03188 kinesin-12 family protein; Provisional
Probab=76.69 E-value=2.1e+02 Score=39.39 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 528 LQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL----------QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 528 Lq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLl----------q~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
-..+|+.+...|..+|....|-+.+.....+..= .+-.|+-.--.+++.+..-|+++...|+.||+.
T Consensus 1115 ~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1115 QYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3445555666666666666666666554422211 111122222235566677777778888877763
No 234
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=76.24 E-value=1.3e+02 Score=33.31 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDR 657 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~r 657 (1191)
.|+++++...+-++.+..-+++++++
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~ 138 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQK 138 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhh
Confidence 44444444444444444444444443
No 235
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.14 E-value=1.8 Score=52.44 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=35.3
Q ss_pred CCceeecceeeCCCCChhhHHhchHHhHhhh--cCC--ccEEEEeeccCCCCcccccc
Q 001007 184 PKKDFEFDRVYGPHVGQAELFSDVQPFVQSA--LDG--YNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 184 ~~k~F~FD~VF~p~asQeeVFeeV~PLV~sv--LdG--yN~~IfAYGQTGSGKTyTM~ 237 (1191)
-+..|+||.-... .++...|..+..+.... ..| ||. +|-||++|+||||.+.
T Consensus 104 l~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 104 LDPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CCccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 3577999996653 35556666665555433 223 554 5679999999999984
No 236
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=75.87 E-value=1.7e+02 Score=37.85 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001007 756 NKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 799 (1191)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1191)
||++++++++|+=- +=+..+.|++-|=-++|.+
T Consensus 429 ~~~~~l~~~~~~gl-----------~lg~~~a~l~e~~d~~i~s 461 (754)
T TIGR01005 429 KKGPIVGLAAVLGL-----------LLGAIFALLRELFSGRAMR 461 (754)
T ss_pred chHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccCC
Confidence 77777777665432 2245577777664444433
No 237
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=75.80 E-value=1.2e+02 Score=32.55 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 539 l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+.++.+.+..+.++++..+..+....+....-+.+..-.++-|...+..+...+..
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444555555555555555544444444444444555555555555544433
No 238
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.80 E-value=1.6 Score=51.66 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=21.3
Q ss_pred hHHhHhhhcCCcc-EEEEeeccCCCCccccc
Q 001007 207 VQPFVQSALDGYN-VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 207 V~PLV~svLdGyN-~~IfAYGQTGSGKTyTM 236 (1191)
+..++..++.|.- ..++.||.||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 4444555555443 33999999999999987
No 239
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.44 E-value=47 Score=41.93 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=7.5
Q ss_pred eCCCCCCHHHHHHH
Q 001007 436 ICPNAANMSETLSS 449 (1191)
Q Consensus 436 ISPs~~~~eETLsT 449 (1191)
++++..|.-+.|..
T Consensus 336 ~~~~ddH~RDALAA 349 (652)
T COG2433 336 ISVSDDHERDALAA 349 (652)
T ss_pred CCCCCchHHHHHHH
Confidence 45555565555543
No 240
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.22 E-value=1.2 Score=41.92 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.6
Q ss_pred EEeeccCCCCccccccc
Q 001007 222 IFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM~G 238 (1191)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999999953
No 241
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.21 E-value=1.7e+02 Score=34.65 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 628 ~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.-..++-..+.+...++++|+.+..-+.|...+-
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777788888888877777765443
No 242
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=74.97 E-value=2.9 Score=46.54 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=19.8
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 207 V~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..++..++.+ .+.|+-.|.||||||.+|
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHH
Confidence 34444444433 345666799999999998
No 243
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.79 E-value=1.4e+02 Score=39.94 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhHHH
Q 001007 1077 SLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQR 1129 (1191)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1191)
.|+++.+++++++.+...---+-.++++...-++...|+.- ..-|||+-+
T Consensus 855 el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~---~lek~~~~~ 904 (1200)
T KOG0964|consen 855 ELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK---NLEKEKKDN 904 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh
Confidence 35666777777766655333333455555555555444433 335677766
No 244
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.68 E-value=1.9 Score=41.17 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.6
Q ss_pred ccEEEEeeccCCCCccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1191)
....++-+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3446788999999999876
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=74.65 E-value=1.3 Score=57.34 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=23.2
Q ss_pred hchHHhHhhhcC--CccEEEEeeccCCCCccccc
Q 001007 205 SDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 205 eeV~PLV~svLd--GyN~~IfAYGQTGSGKTyTM 236 (1191)
+.+..++..++. |-+.|+|-||+||+|||.|+
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 334455555554 44567899999999999998
No 246
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.38 E-value=1.4e+02 Score=32.76 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 540 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 540 ~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
+..+..++.++.+++.+...+....+....++...+...+.++.++...+.+.
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555544455555556666666666666666666554
No 247
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.33 E-value=2.4e+02 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 574 RDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 574 ~e~eIe~Lq~eIeeLE~qL 592 (1191)
....+..|+.++..++.+|
T Consensus 335 a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHhHHhhHHHHHHHHHHHH
Confidence 3444555555555555544
No 248
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.31 E-value=2.5e+02 Score=35.53 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=20.5
Q ss_pred hhhhhhhcc-------CChhhhHHHHHHHHhhcccccccccCCCCCCcccc
Q 001007 916 KALAALFVH-------TPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQ 959 (1191)
Q Consensus 916 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1191)
.-||-||-| ||. |-|-.++.|.--| .|..+|..++
T Consensus 492 deLaqlyh~vc~~n~etp~----rvmlD~~~e~~~~-----~ds~~~~~s~ 533 (772)
T KOG0999|consen 492 DELAQLYHHVCECNNETPN----RVMLDYYRETDLR-----NDSPTGIQSP 533 (772)
T ss_pred HHHHHHHHHHHHHcCCCCc----hhhhhhhcccccc-----CCCcccccCc
Confidence 346666544 454 4455555554433 7788887776
No 249
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.14 E-value=1e+02 Score=34.75 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=45.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 531 DLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 531 dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
+...+...|.......-+++.+....+..|.....+.+.+.......|..+..++..|+.+.++....
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555545555566666666777766677777777777888888888888888888775544
No 250
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=73.92 E-value=11 Score=42.46 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=35.0
Q ss_pred ccCCHHHHHHHHHHHHhhcCCcCcCCceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccc
Q 001007 310 KVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 372 (1191)
Q Consensus 310 ~V~S~~E~~~lL~~g~~nR~~~~T~SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~ 372 (1191)
...+++++...+..+...- . .+...-|.-++.++|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~~-~-~~~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDRV-T-GTNKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHHh-c-CCCCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 3457778888777654321 1 11223566688888877653 36999999998643
No 251
>PRK12704 phosphodiesterase; Provisional
Probab=73.80 E-value=2.5e+02 Score=35.35 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=22.2
Q ss_pred HHHhccchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001007 766 VIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 799 (1191)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1191)
.|||. |=.|+.+.++..+-.+|+..--..+++
T Consensus 278 ~i~P~--~iee~~~~~~~~~~~~~~~~ge~~~~~ 309 (520)
T PRK12704 278 RIHPA--RIEEMVEKARKEVDEEIREEGEQAVFE 309 (520)
T ss_pred CcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665 677888888888877776655544444
No 252
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.59 E-value=1.1e+02 Score=31.10 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001007 561 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1191)
Q Consensus 561 lq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~ 599 (1191)
..+.+..+..+..++...+.++.++.+++.++++.....
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444556777777888888888888888887766553
No 253
>PRK06921 hypothetical protein; Provisional
Probab=73.57 E-value=2 Score=48.68 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=30.1
Q ss_pred eeecceeeCCCCCh--hhHHhchHHhHhhhcC---CccEEEEeeccCCCCcccccc
Q 001007 187 DFEFDRVYGPHVGQ--AELFSDVQPFVQSALD---GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 187 ~F~FD~VF~p~asQ--eeVFeeV~PLV~svLd---GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.++||..-.....+ ..++..+...++++-. +..-.++-||++|+||||.+.
T Consensus 80 ~~~F~nf~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 80 KLTFKNFKTEGKPQAIKDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred hhhhhcCccCCccHHHHHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 46666522111122 3355545566665532 233457889999999999984
No 254
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=73.54 E-value=1.6 Score=44.65 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=19.0
Q ss_pred HhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 204 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 204 FeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
++.+..+++....|...+++-+|.+|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 344555555445677788999999999999986
No 255
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.48 E-value=1.8 Score=49.12 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=27.8
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+||.+.+ |.++.+.+..++. .|....++-||++|+|||++..
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4676664 5556555544443 3443357789999999999883
No 256
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.43 E-value=1.4 Score=54.95 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.+..++..-++.|+..|+||||||.||+
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556667778999999999999999985
No 257
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.38 E-value=1.2e+02 Score=37.66 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001007 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 663 (1191)
Q Consensus 627 s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ka~ 663 (1191)
..++-...+..++...-|.+|+.|.++-...+..+++
T Consensus 388 eelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s 424 (613)
T KOG0992|consen 388 EELKVQFTAKQEKHAETIKELEIELEEYRRAILRNAS 424 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455556666777788888999999998888888874
No 258
>PRK10436 hypothetical protein; Provisional
Probab=73.18 E-value=1.5 Score=53.57 Aligned_cols=28 Identities=36% Similarity=0.293 Sum_probs=23.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.+..++..-++.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455566778899999999999999995
No 259
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=72.99 E-value=1.1e+02 Score=40.33 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=25.0
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCCCCCCccc
Q 001007 921 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDDASGGTTG 958 (1191)
Q Consensus 921 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1191)
++||-- -|-|++.|+.||..+=...+..-....-|..|
T Consensus 737 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G 775 (782)
T PRK00409 737 LIIHGKGTGKLRKGVQEFLKKHPSVKSFRDAPPNEGGFG 775 (782)
T ss_pred EEEcCCChhHHHHHHHHHHcCCCceeeeeecCcccCCCe
Confidence 456643 28899999999998766555555444444444
No 260
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.98 E-value=1.5e+02 Score=32.56 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 001007 640 RDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 640 rd~~ieqL~eEneKL~~rl~~k 661 (1191)
....+..++.|+..|-+.|.+|
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777666
No 261
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=72.84 E-value=1.1e+02 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+..++..+...|..+...+....
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 262
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.65 E-value=98 Score=30.68 Aligned_cols=35 Identities=11% Similarity=0.316 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~ 596 (1191)
...+.++..+..++..+..++.++.+++.++++..
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455666677777777777777777776543
No 263
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.62 E-value=1.4e+02 Score=38.46 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 627 s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
....++|.++..+|-+.++-+......||+++..
T Consensus 232 ~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~t 265 (660)
T KOG4302|consen 232 DKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDT 265 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3556778888888888888888888889988743
No 264
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.61 E-value=1.4 Score=42.92 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.2
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
+.+++.||.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999987
No 265
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.60 E-value=81 Score=39.36 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 556 QVAQLLQLEQEQKMQIQQRDSTIKTLQ 582 (1191)
Q Consensus 556 ql~qLlq~eeElk~qlqq~e~eIe~Lq 582 (1191)
|+.-|-+....+++++....++|+.|+
T Consensus 488 QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 488 QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444444444443
No 266
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.35 E-value=60 Score=40.51 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 630 SKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 630 kkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
..++.-+|+-++=.+|+.++|..|+-..|..
T Consensus 375 glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667778888888888888888877743
No 267
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.29 E-value=1.8e+02 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=9.2
Q ss_pred hCCCCcccccchhhccc
Q 001007 738 NDFNPEQYDNLAVISDG 754 (1191)
Q Consensus 738 ~~~~~~~~~~~~~~~~~ 754 (1191)
+||||+-|--+||-.|+
T Consensus 225 ~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDK 241 (459)
T ss_pred eeecCCCceEEeecCCC
Confidence 45555555555555555
No 268
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.19 E-value=3.5e+02 Score=36.78 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 479 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 520 (1191)
Q Consensus 479 l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk 520 (1191)
..+.++..+.....+..+++.++.++...+........++++
T Consensus 308 ~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 308 IEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666665555555555544
No 269
>PRK10698 phage shock protein PspA; Provisional
Probab=72.15 E-value=1.5e+02 Score=33.14 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001007 486 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI-EKEQNAQLRNQVAQLLQLE 564 (1191)
Q Consensus 486 le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~-~kE~~~qL~~ql~qLlq~e 564 (1191)
++.-|+++++.+..++..+...-.....+...+..........+.....-...=++.+-. --.+......++..+....
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
+.....+.++...+..|+.+|.+++.+.+....+
T Consensus 109 ~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 109 TLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 270
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.15 E-value=1.5e+02 Score=32.80 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 556 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 556 ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
++..+......++..+.++...+..|+.++.+++.+.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444445555555555555554443
No 271
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.11 E-value=1.8e+02 Score=32.86 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
.....+...+.+..+....++..+..++.+|..++.+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555555555555555555555433
No 272
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.98 E-value=87 Score=32.39 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.+...+.++++..+..........+...+.....|+.+|.+++
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444455555555566666666665554
No 273
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=71.80 E-value=1.8 Score=53.08 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.4
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.+..++...++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555667777889999999999999995
No 274
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.28 E-value=1.2e+02 Score=33.87 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001007 582 QAKINSIE 589 (1191)
Q Consensus 582 q~eIeeLE 589 (1191)
..++..|+
T Consensus 93 e~El~~Lr 100 (202)
T PF06818_consen 93 EAELAELR 100 (202)
T ss_pred HHHHHHHH
Confidence 33333333
No 275
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.04 E-value=2.3 Score=42.88 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
++..+..|.| ++..|+||||||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3444556777 6788999999999874
No 276
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.91 E-value=1.8e+02 Score=35.46 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=24.5
Q ss_pred ccccCchhhHHHhhhCC-----CCcccccchhhccchhh
Q 001007 724 IKTTPAGEYLTAALNDF-----NPEQYDNLAVISDGANK 757 (1191)
Q Consensus 724 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 757 (1191)
++-++.|.|+.||=||+ |-|+|.-.+-.+---.|
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk 263 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK 263 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence 67788899999999988 56666665555544455
No 277
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.75 E-value=1.7 Score=47.05 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
+.-+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999999
No 278
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=70.43 E-value=2.9e+02 Score=34.71 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSF-TLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 562 (1191)
Q Consensus 484 ~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~-eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq 562 (1191)
..+...+.+|...+..|...+.-.+..+.....++...|.... ....++..+.......++..+++++.+-.++..+..
T Consensus 354 ~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~ 433 (531)
T PF15450_consen 354 AELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSD 433 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444555666666555555544333333333333332222111 122233333334444444444444444444444443
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001007 563 LEQE--------QKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1191)
Q Consensus 563 ~eeE--------lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~ 599 (1191)
+..- ...+-..++.+|..++.++..+-.++.-.+..+
T Consensus 434 Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~ 478 (531)
T PF15450_consen 434 KCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDN 478 (531)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3222 223335667778888888877666554444333
No 279
>PF12846 AAA_10: AAA-like domain
Probab=70.31 E-value=1.7 Score=47.69 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.0
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 280
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.17 E-value=1e+02 Score=38.60 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=11.1
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001007 528 LQSDLKSENYMLADKHKIEKEQNAQLRNQV 557 (1191)
Q Consensus 528 Lq~dL~~e~~~l~~k~k~~kE~~~qL~~ql 557 (1191)
++.+|..-..-++.++..+-|++..+++++
T Consensus 474 LqDEL~TTr~NYE~QLs~MSEHLasmNeqL 503 (518)
T PF10212_consen 474 LQDELETTRRNYEEQLSMMSEHLASMNEQL 503 (518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 281
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.08 E-value=1.9 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999984
No 282
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.00 E-value=3.4e+02 Score=35.26 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 481 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1191)
Q Consensus 481 ~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElq 519 (1191)
.....+-++|..|......|+..+.....++.....++.
T Consensus 527 ~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~ 565 (786)
T PF05483_consen 527 KQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVK 565 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666666666666655555444444444443
No 283
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.98 E-value=1.5e+02 Score=36.04 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 544 KIEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 544 k~~kE~~~qL~~ql~qLlq~eeE-lk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+..+.++..|+..+..+.++++. ..+...+..+.++..+.+|..||
T Consensus 272 elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344455555555555544443 34556677888899999999999
No 284
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=69.78 E-value=3e+02 Score=34.60 Aligned_cols=52 Identities=25% Similarity=0.430 Sum_probs=34.9
Q ss_pred hhCCCCcccccchhhccchhhHHHHHHHHHHHhc---cchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001007 737 LNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMD 799 (1191)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1191)
|..|||=--| || -+.|--+|.=| .+|=.|+.+..+.-|...|++.-..-||+
T Consensus 249 ls~fdp~rre----ia-------~~~l~~li~dgrihp~riee~~~~~~~~~~~~i~~~g~~~~~~ 303 (514)
T TIGR03319 249 LSGFDPVRRE----IA-------RMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAAFD 303 (514)
T ss_pred ecCCchHHHH----HH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789995433 11 12333334444 35667888889999999999888888887
No 285
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.74 E-value=2 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.4
Q ss_pred EEEEeeccCCCCcccccc
Q 001007 220 VSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~ 237 (1191)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 357889999999999984
No 286
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.64 E-value=3 Score=47.73 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=27.9
Q ss_pred Hhch--HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 204 FSDV--QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 204 FeeV--~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|+++ .|+++.+.--..+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 5553 577888777788899999999999999983
No 287
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.57 E-value=2.2 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=20.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.+..++.-..+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3344443335778999999999999994
No 288
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.53 E-value=3.9e+02 Score=36.12 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=5.2
Q ss_pred ecCCcEEEEe
Q 001007 166 FTDDCTIRVN 175 (1191)
Q Consensus 166 ~~d~~tI~v~ 175 (1191)
|++|+.|.+.
T Consensus 17 f~~GsIvrI~ 26 (1072)
T KOG0979|consen 17 FPDGSIVRIE 26 (1072)
T ss_pred CCCCceEEEE
Confidence 5556555443
No 289
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.46 E-value=1.3e+02 Score=37.79 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 001007 223 FAYGQTHSGKTHTM 236 (1191)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1191)
+-+|.||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 35899999999776
No 290
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.34 E-value=43 Score=41.26 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 574 RDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 574 ~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
++++++.++..+..|..+|.
T Consensus 121 l~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 121 LKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555553
No 291
>PRK10865 protein disaggregation chaperone; Provisional
Probab=69.16 E-value=9.9 Score=49.92 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=28.3
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCcc------EEEEeeccCCCCccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN------~~IfAYGQTGSGKTyTM 236 (1191)
.-+.+|+| |...-..|...|..+..|.+ ++++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 44667776 44444444444444433322 57788899999999976
No 292
>PF15294 Leu_zip: Leucine zipper
Probab=69.08 E-value=1.6e+02 Score=34.19 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNE 517 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qE 517 (1191)
-+..+|..|+.|+..|+..+...+.+|.....|
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~E 161 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDE 161 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999888887655443
No 293
>PF13245 AAA_19: Part of AAA domain
Probab=68.47 E-value=2.3 Score=39.36 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=17.5
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|..++.| +..+.-.|+.|||||+|+.
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHHH
Confidence 3444553 3334458999999999983
No 294
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.92 E-value=2.3e+02 Score=35.69 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=12.9
Q ss_pred hhccchhhHHHHHHHHHHH
Q 001007 750 VISDGANKLLMLVLAAVIK 768 (1191)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~ 768 (1191)
..|.|-=+.+||.++.|..
T Consensus 440 ~lSgGe~~rv~la~~l~~~ 458 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLS 458 (563)
T ss_pred hcCHhHHHHHHHHHHHhhC
Confidence 4577777777777766653
No 295
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.76 E-value=1.4e+02 Score=36.52 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHH-
Q 001007 477 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL----YNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNA- 551 (1191)
Q Consensus 477 ~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l----~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~- 551 (1191)
.....-..-++.++.+++.++...+.++.....+.... ............+-....+.+....+.+...++.+..
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccccccc
Q 001007 552 --------------QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVL 617 (1191)
Q Consensus 552 --------------qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~ 617 (1191)
.++.++.++..+..++........-.+..+++++..++.++.+...................+.
T Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 314 (498)
T TIGR03007 237 EEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQ-- 314 (498)
T ss_pred CCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHH--
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 618 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKL 654 (1191)
Q Consensus 618 ~~~~~~~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL 654 (1191)
+.....+.......+..+++..+.++++++.+..++
T Consensus 315 -l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 315 -LQIELAEAEAEIASLEARVAELTARIERLESLLRTI 350 (498)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 296
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=67.74 E-value=3e+02 Score=33.87 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001007 484 YEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVA 558 (1191)
Q Consensus 484 ~~le~eI~~Lk~Ei~~Lk~~L~~~-----~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~ 558 (1191)
..+-..+.+|++-++.|+...... ..++..+..++....+....++.-+..+.-.|..-++.+-+.+.+.++.+.
T Consensus 216 d~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~ 295 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLK 295 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666554221 122333444455444455555556666555565555555444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 559 QLLQLEQEQKMQIQQRDSTIK 579 (1191)
Q Consensus 559 qLlq~eeElk~qlqq~e~eIe 579 (1191)
.-..+..+++..+....++..
T Consensus 296 ~QedL~~DL~eDl~k~~etf~ 316 (424)
T PF03915_consen 296 LQEDLLSDLKEDLKKASETFA 316 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444433333
No 297
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.42 E-value=5.2e+02 Score=36.40 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.9
Q ss_pred EEeeccCCCCcccccc
Q 001007 222 IFAYGQTHSGKTHTME 237 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM~ 237 (1191)
.+--|++|||||.+|-
T Consensus 27 ~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVLE 42 (1353)
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999999883
No 298
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.29 E-value=2.2e+02 Score=32.01 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=7.9
Q ss_pred cCCCCCCCCchhhhhhH
Q 001007 974 GLGGAVPPSTDALGQLL 990 (1191)
Q Consensus 974 ~~~~~~~~~~~~~~~~~ 990 (1191)
|++++.-...|.||-|+
T Consensus 276 ~~~~~~l~~~~~l~nl~ 292 (302)
T PF10186_consen 276 GIDVPLLDPRDTLGNLL 292 (302)
T ss_pred CCCCCcCCchhhHHHHH
Confidence 45554334444444443
No 299
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=67.13 E-value=2.7 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=16.9
Q ss_pred ccEEEEeeccCCCCcccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~ 237 (1191)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45578889999999999993
No 300
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=66.44 E-value=8.3 Score=44.98 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=19.5
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34555555554 44566699999999877
No 301
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.44 E-value=3.2e+02 Score=33.64 Aligned_cols=29 Identities=34% Similarity=0.354 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 633 LEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 633 LEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.+++.+...+.|+.+.++.+.+..+.-.-
T Consensus 365 fq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 365 FQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666667777888888877776664433
No 302
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=66.39 E-value=1.6e+02 Score=30.24 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 557 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 557 l~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
+.++.+..+-++.++..++...+.++.++++|+..+......
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455566667777777777888888888777665443
No 303
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.32 E-value=2.9e+02 Score=37.38 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHhhcc-CCCccc
Q 001007 390 KSLSALGDVLSSLTS-RKDIVP 410 (1191)
Q Consensus 390 kSLsaLg~VIsALa~-kk~hVP 410 (1191)
..|++|-.--+|=.- ++++++
T Consensus 376 ETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 376 ETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred HHHHHHHHHHHhhhccCCCccc
Confidence 456666655444332 344544
No 304
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=65.82 E-value=3 Score=49.31 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.8
Q ss_pred ccEEEEeeccCCCCcccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~ 237 (1191)
.++.|+-.|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999984
No 305
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=65.80 E-value=2e+02 Score=35.37 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=5.1
Q ss_pred cccCCCCcc
Q 001007 408 IVPYENSML 416 (1191)
Q Consensus 408 hVPYRdSKL 416 (1191)
.-|||++-+
T Consensus 83 ~~p~r~~~~ 91 (447)
T KOG2751|consen 83 SPPVRDSDT 91 (447)
T ss_pred cCccccccc
Confidence 457776543
No 306
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=65.49 E-value=2.3e+02 Score=31.63 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=46.3
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---HHHhHHHHHHHHH
Q 001007 469 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDL---KSENYMLADKHKI 545 (1191)
Q Consensus 469 ikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL---~~e~~~l~~k~k~ 545 (1191)
|.-.+.-..++..++-....+|-.|+..+..++..+...+.++..+...+..+.......+.++ .++...+.+++..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 3334444555566666666777777777776666666665555544443333222222222222 2223334444444
Q ss_pred HHHHHHHHHHHHHHH
Q 001007 546 EKEQNAQLRNQVAQL 560 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qL 560 (1191)
+..++..++..+...
T Consensus 92 le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 92 LEAELAELREELACA 106 (202)
T ss_pred hHHHHHHHHHHHHhh
Confidence 444555555555443
No 307
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.35 E-value=2.1e+02 Score=31.22 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001007 634 EEELKKRDALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 634 EEeLkkrd~~ieqL~eEneKL~~rl~ 659 (1191)
..+.++...+++-++..|..|.++|+
T Consensus 162 ~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 162 QEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555566666666666666654
No 308
>PHA01754 hypothetical protein
Probab=65.20 E-value=10 Score=34.27 Aligned_cols=49 Identities=37% Similarity=0.521 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccchhhhHHHHHhhhhhhhHHHHHHHHHhhccc
Q 001007 991 SEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDV 1048 (1191)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1191)
-|++-..|- -|.|.|-.|||||-|..-|-.-...|+|-| ||+..||.+-
T Consensus 12 tEltAKLyl----ALdDLamaLATee~EeVRkSevfqkA~EVi-----Kvvkemrr~~ 60 (69)
T PHA01754 12 TELTAKLYL----ALDDLTMALATEDKEEVRKSEVFQKALEVV-----KVVKEMRRLQ 60 (69)
T ss_pred HHHHHHHHH----HHHHHHHHHhhcchHHHHHHHHHHHHHHHH-----HHHHHHHHcc
Confidence 356666775 699999999999999999998899999988 8999999753
No 309
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.14 E-value=4.1e+02 Score=34.66 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=14.5
Q ss_pred CCCcceEEEEEeCCCCCCHHHHHHHh
Q 001007 425 GESSKTLMIVNICPNAANMSETLSSL 450 (1191)
Q Consensus 425 GGNSKTlMIv~ISPs~~~~eETLsTL 450 (1191)
++++.++-|-.-++++.-....+++|
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~l 249 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSI 249 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHH
Confidence 34566666666667655554444443
No 310
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.01 E-value=74 Score=30.39 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 001007 566 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 645 (1191)
Q Consensus 566 Elk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ie 645 (1191)
+++.++......+..+..++.+++.-+.+...-.+.+...+.-...... .+.......|+++.+..+..|+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~---------~~~~~~~~~L~~~~~~~~~~i~ 79 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVK---------QDKEEAIEELEERIEKLEKEIK 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEE---------EEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHH---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444433333332222111111111 2455666666666666666666
Q ss_pred HHHHHHHHHHHhh
Q 001007 646 RLHEENEKLFDRL 658 (1191)
Q Consensus 646 qL~eEneKL~~rl 658 (1191)
.+......+-.++
T Consensus 80 ~l~~~~~~l~~~l 92 (106)
T PF01920_consen 80 KLEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555555554444
No 311
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.99 E-value=3.7e+02 Score=33.85 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=19.9
Q ss_pred ccccccccccCCCCCCCCcccCCCCcccccCCCeEEee
Q 001007 680 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALV 717 (1191)
Q Consensus 680 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1191)
.|-.|=|||.+-|....- ...--.+-.|-|.++|.|.
T Consensus 214 ~~kgriigreGrnir~~e-~~tgvd~iiddtp~~v~ls 250 (514)
T TIGR03319 214 EMKGRIIGREGRNIRALE-TLTGVDLIIDDTPEAVILS 250 (514)
T ss_pred hhhccccCCCcchHHHHH-HHhCceEEEcCCCCeEEec
Confidence 566777888877665432 1111123356666666653
No 312
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.95 E-value=2.7e+02 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
+...+..+.+++.+|..|+.+++.|..+.
T Consensus 195 i~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 195 IVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666666665443
No 313
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=64.94 E-value=2.3 Score=44.72 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=20.7
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444444566788999999999999987
No 314
>PRK12704 phosphodiesterase; Provisional
Probab=64.91 E-value=3.7e+02 Score=33.87 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=11.0
Q ss_pred ccccccccccCCCCCC
Q 001007 680 NVQPRDMARNDNNNKG 695 (1191)
Q Consensus 680 ~~q~~~~~~~~~~~~~ 695 (1191)
.|-.|=|||.+-|...
T Consensus 220 ~mkgriigreGrnir~ 235 (520)
T PRK12704 220 EMKGRIIGREGRNIRA 235 (520)
T ss_pred hhhcceeCCCcchHHH
Confidence 5667777887776554
No 315
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.88 E-value=1.8e+02 Score=37.28 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.0
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999876
No 316
>PRK11281 hypothetical protein; Provisional
Probab=64.68 E-value=2.6e+02 Score=38.39 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 633 LEEELKKRDALIERLHEENEK 653 (1191)
Q Consensus 633 LEEeLkkrd~~ieqL~eEneK 653 (1191)
+..++.+.+.+++.|.+...+
T Consensus 232 ~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544443
No 317
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.60 E-value=4.1 Score=44.85 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.1
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+......++-+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444556778999999999887
No 318
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.44 E-value=2.5e+02 Score=34.09 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=30.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 471 KWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1191)
Q Consensus 471 k~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElq 519 (1191)
+...+...++..+.....|-.+|+.....++..+....+.+....+|.+
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAq 330 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQ 330 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677777777777777777777776665555554444444
No 319
>PRK00106 hypothetical protein; Provisional
Probab=64.37 E-value=3.9e+02 Score=33.91 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=34.4
Q ss_pred hhCCCCcccccchhhccchhhHHHHHHHHHHHhc---cchhHHHHHHHhhhHHHHhHhcCcccchhh
Q 001007 737 LNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMDT 800 (1191)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1191)
|..|||=--| || .+.|--.|+=| .+|=.|+....+.-|..+|++.--..|+|.
T Consensus 270 lS~fdpvRRe----iA-------r~~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge~a~~~l 325 (535)
T PRK00106 270 LSGFDPIRRE----IA-------RMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEI 325 (535)
T ss_pred EeCCChHHHH----HH-------HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6789996543 22 22344444444 356678888888888888887766666664
No 320
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.10 E-value=2.6e+02 Score=35.89 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.1
Q ss_pred ccchhhhhhhhcc
Q 001007 874 KSKLSSVVLRMRG 886 (1191)
Q Consensus 874 ~~~~~~~~~~~~~ 886 (1191)
++-+-.++.|||-
T Consensus 489 ~rglrnifgKlrR 501 (861)
T KOG1899|consen 489 RRGLRNIFGKLRR 501 (861)
T ss_pred hhHHHHHHHHhhh
Confidence 3446667777763
No 321
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.94 E-value=3.5e+02 Score=33.28 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
+.++.++.++...++....+...+...+++-+.-+.-+++|.++|.
T Consensus 339 d~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkele 384 (502)
T KOG0982|consen 339 DLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELE 384 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444445555555443
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=63.63 E-value=3.6 Score=46.52 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=21.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.+..++..-.+.|+-.|.||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3445555556678889999999999994
No 323
>PRK11519 tyrosine kinase; Provisional
Probab=63.30 E-value=4.5e+02 Score=34.26 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=15.5
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHh
Q 001007 427 SSKTLMIVNICPNAANMSETLSSL 450 (1191)
Q Consensus 427 NSKTlMIv~ISPs~~~~eETLsTL 450 (1191)
++.++-|-.-++++.-....+++|
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHH
Confidence 456666666677766666666665
No 324
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.18 E-value=36 Score=31.27 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
.+.+.+|+.+++......++++..+.+.+.+|..|+.++..|..+++..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777777778888888888888888888777543
No 325
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=63.07 E-value=4 Score=41.88 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=32.4
Q ss_pred eeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHh
Q 001007 192 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 256 (1191)
Q Consensus 192 ~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~ 256 (1191)
++||.+--++.|...+..-+.+=-....-.+--.|.||+||||+- ..+.+.||..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 466655444444444433333222233444556799999999975 5567778864
No 326
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.06 E-value=98 Score=34.78 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=4.6
Q ss_pred ccccCchhh
Q 001007 724 IKTTPAGEY 732 (1191)
Q Consensus 724 ~~~~~~~~~ 732 (1191)
+-.||-|..
T Consensus 195 ~~~t~Dg~~ 203 (251)
T PF11932_consen 195 YYQTLDGSQ 203 (251)
T ss_pred eeECCCccc
Confidence 445555553
No 327
>PRK00106 hypothetical protein; Provisional
Probab=62.80 E-value=4.1e+02 Score=33.69 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=20.1
Q ss_pred ccccccccccCCCCCCCCcccCCCCcccccCCCeEEee
Q 001007 680 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALV 717 (1191)
Q Consensus 680 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1191)
.|-.|=|||.+-|....-. ..--.+-.|.|.++|.|.
T Consensus 235 emkGriIGreGrNir~~E~-~tGvdliiddtp~~v~lS 271 (535)
T PRK00106 235 NMKGRIIGREGRNIRTLES-LTGIDVIIDDTPEVVVLS 271 (535)
T ss_pred HhhcceeCCCcchHHHHHH-HhCceEEEcCCCCeEEEe
Confidence 5677778888776554321 111123356666666653
No 328
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=62.22 E-value=2.7e+02 Score=31.32 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS-FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL 563 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~-~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~ 563 (1191)
..+..+..+++.+..|+..+..-..+.......++..+... ..++..+. ..+..+.......+..+..++..+...
T Consensus 31 ~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~---~~~~~~~~~~~~~l~~L~~ri~~L~~~ 107 (247)
T PF06705_consen 31 QEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVE---NQISEKQEQLQSRLDSLNDRIEALEEE 107 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777766544333333333333322211 11222211 122223333344444454555444433
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQ-QRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDA 642 (1191)
Q Consensus 564 eeElk~qlq-q~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~ 642 (1191)
..+.+.+.. ..+.....+.+++..+...++.....-..+- ..- +..-.++...+..+++.|...|+.
T Consensus 108 i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE---------~~i---~krl~e~~~~l~~~i~~Ek~~Re~ 175 (247)
T PF06705_consen 108 IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREERE---------ENI---LKRLEEEENRLQEKIEKEKNTRES 175 (247)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222221 1233334455566665554443222211100 000 111123566777788888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 001007 643 LIERLHEENEKLFDR 657 (1191)
Q Consensus 643 ~ieqL~eEneKL~~r 657 (1191)
-+..+..+.+.+...
T Consensus 176 ~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 176 KLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877766653
No 329
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.10 E-value=4e+02 Score=33.22 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 571 IQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 571 lqq~e~eIe~Lq~eIeeLE 589 (1191)
.-+.+..+.....+++.|.
T Consensus 448 clEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 448 CLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 3344444444444444443
No 330
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.02 E-value=3.7e+02 Score=32.87 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRL 658 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl 658 (1191)
...+++.....++..++.+..+.-+++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666665555554
No 331
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=61.98 E-value=4.8 Score=42.89 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.5
Q ss_pred EEEeeccCCCCccccccc
Q 001007 221 SIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~G 238 (1191)
.++-||++|+||||...+
T Consensus 49 ~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHH
Confidence 478899999999999853
No 332
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.59 E-value=1.1e+02 Score=32.42 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHH
Q 001007 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQE-----YSNAKIDRVTRYLGVLADKTRKLD 115 (1191)
Q Consensus 58 k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~-----~~~~~l~~v~~~l~~L~~~~~~l~ 115 (1191)
-..+..++..|++++..++.++..|+.+...+.. .+...+..+..++..+.++...|.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888777643 223334455555555555555443
No 333
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.51 E-value=4.8e+02 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=28.4
Q ss_pred hhHhHHHh-hHHHHHhhCccccccCchhHHHHHHHHHHHHHHHHhhcccce
Q 001007 1100 SKKKAMLT-SLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVA 1149 (1191)
Q Consensus 1100 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1149 (1191)
+|+-+-|. -+-..+.||.-|= -|-+-.|-.-|.+|.+|.-.+-|+.
T Consensus 599 ~~ev~qlk~ev~s~ekr~~rlk----~vF~~ki~eFr~ac~sL~Gykid~~ 645 (716)
T KOG4593|consen 599 SKEVAQLKKEVESAEKRNQRLK----EVFASKIQEFRDACYSLLGYKIDFT 645 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 45444432 2334444444443 4777888888999999986666654
No 334
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=61.41 E-value=3.7 Score=39.61 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999876
No 335
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=61.29 E-value=3.8e+02 Score=33.95 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 538 MLADKHKIEKEQNAQLRNQVAQLL 561 (1191)
Q Consensus 538 ~l~~k~k~~kE~~~qL~~ql~qLl 561 (1191)
.+-..++..++.+..+...+..+.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~ 336 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVK 336 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554444443
No 336
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.29 E-value=4.1e+02 Score=37.34 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 635 EELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 635 EeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.++.+......+...+.+-..+.+..-
T Consensus 368 ~~~~~~~~r~~~~~~~l~~~~~el~~~ 394 (1353)
T TIGR02680 368 RRLDEEAGRLDDAERELRAAREQLARA 394 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444455555444
No 337
>PF13479 AAA_24: AAA domain
Probab=61.21 E-value=4 Score=44.35 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.0
Q ss_pred cEEEEeeccCCCCccccccc
Q 001007 219 NVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~G 238 (1191)
+..|+-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999998754
No 338
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=60.99 E-value=13 Score=43.02 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..++..++.+ ...|+-.|.||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555554 3457789999999999983
No 339
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=60.87 E-value=3.8 Score=46.29 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCChhhHHhchHHhHhhhcC--CccEEEEeeccCCCCcccccc
Q 001007 197 HVGQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 197 ~asQeeVFeeV~PLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
-..|+++.+.+..++..... +....++-||++|+|||+...
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34477777776666655432 222236669999999998773
No 340
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.55 E-value=27 Score=45.08 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHH
Q 001007 563 LEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDA 642 (1191)
Q Consensus 563 ~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~ 642 (1191)
....++.++..++.++..|+.++..|+.+|....-++.- ....-.+.-++. ++..... ..+.+
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~--------~~~~trVL~lr~---NP~~~~~------~~k~~ 566 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELEKLTLQGEF--------NPSKTRVLHLRD---NPTSKAE------QIKKS 566 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT----------BTTTEEEEEESS----HHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------CCCCceeeeeCC---CcHHHHH------HHHHH
Confidence 334466677777888888888888888777541111000 000011111222 2222211 23356
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 001007 643 LIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 643 ~ieqL~eEneKL~~rl~~k 661 (1191)
.++.|+.||+.|..++..-
T Consensus 567 ~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 567 TLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8889999999999998443
No 341
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.41 E-value=3.6 Score=44.52 Aligned_cols=17 Identities=41% Similarity=0.430 Sum_probs=14.9
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57789999999999983
No 342
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.13 E-value=1e+02 Score=28.64 Aligned_cols=22 Identities=5% Similarity=0.068 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001007 572 QQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 572 qq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
...-.+|..|+.+++.|+.++.
T Consensus 43 ~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 43 GDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555554443
No 343
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.07 E-value=1.1e+02 Score=28.03 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 557 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 557 l~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
...+..+.++...+...+..+|..|+.++++++
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444445555555555555555543
No 344
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=60.00 E-value=3.8e+02 Score=32.34 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHhcChhHHHHhhhhhhcccCCCCEEE
Q 001007 111 TRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKV 148 (1191)
Q Consensus 111 ~~~l~~~~~e~e~r~~~~~~eRrkLhN~l~elkGnIRV 148 (1191)
..+|+..+.++..++..+...|.++-+.+..+.+++.|
T Consensus 59 k~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i 96 (384)
T PF03148_consen 59 KNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSI 96 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33455566666666777788888888888877665554
No 345
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=59.96 E-value=3.8e+02 Score=32.28 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=15.5
Q ss_pred CCCcceEEEEEeCCCCCCHHHHHHHh
Q 001007 425 GESSKTLMIVNICPNAANMSETLSSL 450 (1191)
Q Consensus 425 GGNSKTlMIv~ISPs~~~~eETLsTL 450 (1191)
.+++..+-|-.-+|++.-.....+++
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~ 153 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAF 153 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 45566666666677666555555443
No 346
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.88 E-value=79 Score=35.53 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=25.8
Q ss_pred CcccccchhhccchhhHHHHHHHHHHHhccchhH--HHHHHHhhh
Q 001007 742 PEQYDNLAVISDGANKLLMLVLAAVIKAGASREH--EILAEIRDA 784 (1191)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 784 (1191)
|+..++.--|-+|--|..-.+|..|-=|-.|||. |-|.=|+-|
T Consensus 227 p~die~~~~~~~~~e~e~~i~lg~~~iaapsREdave~l~iik~a 271 (290)
T COG4026 227 PKDIEGQGYIYAEDEKEVEILLGTVYIAAPSREDAVEELEIIKEA 271 (290)
T ss_pred chhccceeeeecccccccceeeeeeeeecCchHHHHHHHHHHHHH
Confidence 5555555556666666665666666666677776 555555544
No 347
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=59.64 E-value=13 Score=43.51 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=20.3
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..++..++.+. ..|+-.|.||||||.+|.
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34555555433 346788999999999983
No 348
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=59.58 E-value=4.5 Score=48.31 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=30.0
Q ss_pred EEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechh
Q 001007 220 VSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ 280 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~ 280 (1191)
.-|+-||.+||||||+. +.+|+..+ .-.|++.++|-|+=.
T Consensus 31 S~~~iyG~sgTGKT~~~--------------r~~l~~~n-------~~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------------RQLLRKLN-------LENVWLNCVECFTYA 70 (438)
T ss_pred eeEEEeccCCCchhHHH--------------HHHHhhcC-------CcceeeehHHhccHH
Confidence 34689999999999987 56776552 226889999988533
No 349
>PRK01156 chromosome segregation protein; Provisional
Probab=59.47 E-value=5.5e+02 Score=34.05 Aligned_cols=12 Identities=50% Similarity=0.565 Sum_probs=6.3
Q ss_pred ccccccCchhHH
Q 001007 1117 PSLLDIDHPCAQ 1128 (1191)
Q Consensus 1117 ~~~~~~~~~~~~ 1128 (1191)
|.+|-+|-|.+.
T Consensus 826 ~~~lilDEpt~~ 837 (895)
T PRK01156 826 KSLLIMDEPTAF 837 (895)
T ss_pred CCeEEEeCCCCc
Confidence 555555555543
No 350
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=59.38 E-value=38 Score=45.89 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.7
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+|..++.|.|+.+ .-+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLV--imPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFV--LMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEE--EcCCCccHHHHH
Confidence 467888899999654 459999999875
No 351
>PF14992 TMCO5: TMCO5 family
Probab=59.18 E-value=1.1e+02 Score=35.67 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=25.6
Q ss_pred HhhhHHHHhHhcCcccchhh--hhhhhhhhHHHHHhhhc
Q 001007 781 IRDAVFAFIRKMEPTRVMDT--MLVSRVRILYIRSLLAR 817 (1191)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 817 (1191)
.-+-+|-||.-.-|.-+.|+ ++.||-++--.|.+|.=
T Consensus 231 LL~y~~f~~~fInpdll~~~LP~~L~R~tlw~LR~~l~P 269 (280)
T PF14992_consen 231 LLGYLLFYIQFINPDLLEDVLPKMLSRRTLWRLREFLFP 269 (280)
T ss_pred HHHHHHHHHhhcCcHHHHHHhHHhcchhHHHHHHHHHhh
Confidence 34566777888888777775 35677777777777653
No 352
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=59.06 E-value=1.9e+02 Score=37.20 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001007 636 ELKKRDALIERLHEENEKLFDRLTEKAS 663 (1191)
Q Consensus 636 eLkkrd~~ieqL~eEneKL~~rl~~ka~ 663 (1191)
++..-+..+.+...+-.|.|+.+..+.+
T Consensus 360 e~ea~E~rkkr~~aei~Kffqk~~~k~~ 387 (811)
T KOG4364|consen 360 EVEAQELRKKRHEAEIGKFFQKIDNKFS 387 (811)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccC
Confidence 4445555666677888899999877743
No 353
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=59.03 E-value=3.6e+02 Score=31.80 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred cCCCcceEEEEEeCCCCCCHHH----HHHHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 424 LGESSKTLMIVNICPNAANMSE----TLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILG 499 (1191)
Q Consensus 424 LGGNSKTlMIv~ISPs~~~~eE----TLsTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~ 499 (1191)
+||-.-.+|++- .--...|.. --..+.||..+-.|.-.... -.....+....++...+......|.+|+.++..
T Consensus 22 vGGp~Gl~ml~A-gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~ 99 (301)
T PF06120_consen 22 VGGPPGLVMLGA-GAWYYFYQNAEQARQEAIEFADSLDELKEKLKE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDS 99 (301)
T ss_pred hcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577776776653 111122222 34578888887665422111 011123444455556666666777777777777
Q ss_pred HHHHHHHH
Q 001007 500 LRQALKEA 507 (1191)
Q Consensus 500 Lk~~L~~~ 507 (1191)
|+..+...
T Consensus 100 l~~~i~~y 107 (301)
T PF06120_consen 100 LKDQIKNY 107 (301)
T ss_pred HHHHHHHH
Confidence 77666543
No 354
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.98 E-value=3.4e+02 Score=31.41 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=3.6
Q ss_pred HHHHhhhhc
Q 001007 653 KLFDRLTEK 661 (1191)
Q Consensus 653 KL~~rl~~k 661 (1191)
++...+..+
T Consensus 164 ~il~~~~~k 172 (258)
T PF15397_consen 164 EILSSAAEK 172 (258)
T ss_pred HHHHHHHHH
Confidence 344444333
No 355
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.92 E-value=3.6e+02 Score=33.72 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001007 577 TIKTLQAKINSIESQR 592 (1191)
Q Consensus 577 eIe~Lq~eIeeLE~qL 592 (1191)
.+.....++..|..++
T Consensus 363 k~~~ke~E~q~lr~~l 378 (511)
T PF09787_consen 363 KLKEKESEIQKLRNQL 378 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444444
No 356
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.67 E-value=4.3e+02 Score=32.55 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEANDQCVLLYNE 517 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qE 517 (1191)
.++++|.+++.+|.+.+.....++..+..+
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e 202 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSLLAE 202 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777776666665555554444333
No 357
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=58.36 E-value=1.2e+02 Score=33.80 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.|+.+..++....-++...+.+++.+|..++.+-.+++
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444445555555555555554444
No 358
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.33 E-value=2.2e+02 Score=29.11 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE~q 591 (1191)
.++.++..++.++.+|..|
T Consensus 102 ~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555443
No 359
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.30 E-value=2.9 Score=53.52 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRL 658 (1191)
Q Consensus 626 ~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl 658 (1191)
+...++||+ ++.-.+.+++.|++.|..+.++.
T Consensus 317 ve~YKkKLe-d~~~lk~qvk~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 317 VEKYKKKLE-DLEDLKRQVKELEEDNAVLLETK 348 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 45666667777777777666663
No 360
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=58.09 E-value=5e+02 Score=34.43 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 001007 639 KRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 639 krd~~ieqL~eEneKL~~rl~~k 661 (1191)
-++..+++|..|.+|+.|.+.+-
T Consensus 1089 L~ehelenLrnEieklndkIkdn 1111 (1424)
T KOG4572|consen 1089 LKEHELENLRNEIEKLNDKIKDN 1111 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34556777888888888887654
No 361
>PRK04406 hypothetical protein; Provisional
Probab=58.05 E-value=60 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
+.+.+.+|+.+++......++++..+.+.+.+|..|++++..|..+++..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666677777666777777777777788888888888887767543
No 362
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.01 E-value=4.9e+02 Score=32.99 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhccccchhhhhHhHHH-hhHHHHHhhC
Q 001007 1079 DGILNQVKDAVRQSSVNTLSRSKKKAML-TSLDELAERM 1116 (1191)
Q Consensus 1079 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1116 (1191)
.+-+.++.+-+.+.|.+.-.-++..... ..++.|.+..
T Consensus 450 ~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 450 SDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666665555544322 2344444433
No 363
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=57.97 E-value=4.3 Score=43.68 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=18.2
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|..++...+..++..|..||||||+|.
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 444444444345558999999999983
No 364
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=57.84 E-value=1.3e+02 Score=32.74 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1191)
Q Consensus 57 ~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~ 91 (1191)
.-+.|.-++.+|.++++.+...|..+-.|.+.++.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888888777777777766654
No 365
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=57.58 E-value=5.9 Score=41.65 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=16.6
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444454333 45668999999999884
No 366
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.49 E-value=2.5e+02 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 477 NDARKELYEREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 477 ~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
..++..+.+-+..+++=..||.+||.+|..+
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444455555555566666555443
No 367
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=57.35 E-value=1.3e+02 Score=30.36 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
+..+...+...+..|+.+|.++.+.+
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544
No 368
>PRK09183 transposase/IS protein; Provisional
Probab=57.23 E-value=5.9 Score=44.62 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=16.0
Q ss_pred CCccEEEEeeccCCCCcccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.|.| |+-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4665 4568999999999985
No 369
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=57.19 E-value=45 Score=40.81 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667999999999887
No 370
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.74 E-value=3.9e+02 Score=31.49 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 629 VSKKLEEELKKRDALIERLHEEN 651 (1191)
Q Consensus 629 lkkKLEEeLkkrd~~ieqL~eEn 651 (1191)
+.+||.++.+.+..+|..|+...
T Consensus 220 RLkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777666666666555443
No 371
>PRK12705 hypothetical protein; Provisional
Probab=56.67 E-value=5.1e+02 Score=32.74 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=11.1
Q ss_pred ccccccccccCCCCCC
Q 001007 680 NVQPRDMARNDNNNKG 695 (1191)
Q Consensus 680 ~~q~~~~~~~~~~~~~ 695 (1191)
.|-.|=|||.+-|...
T Consensus 208 emkGriIGreGrNir~ 223 (508)
T PRK12705 208 AMKGRIIGREGRNIRA 223 (508)
T ss_pred HhhccccCccchhHHH
Confidence 5677778887776544
No 372
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.46 E-value=5.8e+02 Score=33.32 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 001007 643 LIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 643 ~ieqL~eEneKL~~rl~~k 661 (1191)
...-|+.||.++..++.+-
T Consensus 300 ~~~~LELeN~~l~tkL~rw 318 (716)
T KOG4593|consen 300 TLLGLELENEDLLTKLQRW 318 (716)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3344788999999888654
No 373
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=56.28 E-value=7.2e+02 Score=34.39 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILG 499 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~ 499 (1191)
++..++.+++.|+..+..
T Consensus 216 ~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 216 RSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 374
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.21 E-value=1.3e+02 Score=37.46 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEANDQC 511 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~ 511 (1191)
.+..++++|++|+.++..++.++...+.+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555554444
No 375
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=56.20 E-value=2.5e+02 Score=29.51 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=35.7
Q ss_pred HHHHHHhhcccccCcchhhhhhhHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 451 NFSSRARSTVLSLGNRDTIKKWRDIAND---ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1191)
Q Consensus 451 rFAsRAr~I~~~~~n~~tikk~k~i~~~---l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElq 519 (1191)
+|.+++..+.++++.......+..+.+. +...+......+..|+.|+.+.+..++.....+..+++.++
T Consensus 1 rl~~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 1 RLLRRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred ChHhhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777766666553332222222222 22233344455667777777766666655555554544443
No 376
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=56.10 E-value=5 Score=38.68 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999986
No 377
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=56.03 E-value=2.7e+02 Score=29.37 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEAN 508 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~ 508 (1191)
.....|++|+..+..+.+.-..+.
T Consensus 33 ~v~~~i~~L~~~L~~~~n~t~~~~ 56 (146)
T PF08702_consen 33 DVDKDIQELENLLDQISNSTSEAF 56 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhhhHH
Confidence 445566666666666655544443
No 378
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.91 E-value=1.4e+02 Score=31.59 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQ 510 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q 510 (1191)
.++.+|.+|+.++..|+.....+..+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444333
No 379
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=55.87 E-value=6.1e+02 Score=33.45 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhc
Q 001007 647 LHEENEKLFDRLTEK 661 (1191)
Q Consensus 647 L~eEneKL~~rl~~k 661 (1191)
|++-.++|...+..-
T Consensus 717 lkek~e~l~~e~~~~ 731 (762)
T PLN03229 717 LKEKFEELEAELAAA 731 (762)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777777776553
No 380
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=55.66 E-value=4.8e+02 Score=32.19 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001007 484 YEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVA 558 (1191)
Q Consensus 484 ~~le~eI~~Lk~Ei~~Lk~~L~~~-----~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~ 558 (1191)
+.+-..+.+|++-++.||...... ..++....+++....+....|+.-+..+.-.|..-++.+-+...+.++.+.
T Consensus 220 d~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~ 299 (426)
T smart00806 220 DSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLT 299 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777664322 234445556666666666677777888777777777766666666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 559 QLLQLEQEQKMQIQQRDSTI 578 (1191)
Q Consensus 559 qLlq~eeElk~qlqq~e~eI 578 (1191)
-...+..+++.-+....++.
T Consensus 300 lQedL~~DL~dDL~ka~eTf 319 (426)
T smart00806 300 LQEDLIADLKEDLEKAEETF 319 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 381
>PLN03025 replication factor C subunit; Provisional
Probab=55.64 E-value=6.7 Score=45.15 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=25.2
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+||.|.+ |.++.+.+..++. .|.-..++-||+.|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 3555553 4555544444433 2332235559999999999984
No 382
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=55.51 E-value=2.3e+02 Score=33.87 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 476 ANDARKELYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 476 ~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
....+.+++...-.++.|.-|..-|+.++.
T Consensus 21 t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~ 50 (355)
T PF09766_consen 21 TAEAKQEVDALHLQLQNLLYEKSHLQKEIK 50 (355)
T ss_pred HHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 383
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.45 E-value=3.8e+02 Score=33.21 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 626 SSAVSKKLEEELKKRDALIERLHEE 650 (1191)
Q Consensus 626 ~s~lkkKLEEeLkkrd~~ieqL~eE 650 (1191)
+..-.+|.++++-+.-..-.+|.++
T Consensus 394 i~gniRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 394 IDGNIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555544444333333333
No 384
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.35 E-value=1.3e+02 Score=37.32 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001007 641 DALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 641 d~~ieqL~eEneKL~~rl~ 659 (1191)
.+++.++......|.++|.
T Consensus 122 ~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344444444555553
No 385
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.29 E-value=1.1e+02 Score=40.06 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=23.8
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCC-CCCC
Q 001007 921 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDD-ASGG 955 (1191)
Q Consensus 921 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 955 (1191)
..||-- .|-|++.|+.||..+=...+..-+. .-||
T Consensus 726 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG 762 (771)
T TIGR01069 726 LIIHGKGSGKLRKGVQELLKNHPKVKSFRDAPPNDGG 762 (771)
T ss_pred EEEcCCChhHHHHHHHHHhcCCcceeeecccCcccCC
Confidence 356632 3899999999999976666664433 3344
No 386
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.27 E-value=1.1e+02 Score=40.34 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=12.6
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
-+++-.|+.++|||.+|
T Consensus 328 ~~~iITGpN~gGKTt~l 344 (782)
T PRK00409 328 TVLVITGPNTGGKTVTL 344 (782)
T ss_pred eEEEEECCCCCCcHHHH
Confidence 34555788888888877
No 387
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.08 E-value=3e+02 Score=29.61 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEANDQCVLL 514 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l 514 (1191)
.+...|+.|+..++..+.....+...+
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~L 53 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKL 53 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 388
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.84 E-value=3.2e+02 Score=29.88 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=31.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 531 DLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 531 dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeE-lk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
++..+...++.....+..+..++..+...+.....+ ........+++|+.|+.....|+.+|
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555554444433333 22333445667777777777776665
No 389
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.78 E-value=41 Score=41.42 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
+.+..++++++..+.+..+++..+.+..+++|+.|+.++..|+.|+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655555555666677778888888888888777
No 390
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.74 E-value=2.8e+02 Score=36.52 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.3
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
-.+.-.|+.|+|||..|
T Consensus 323 ~~liItGpNg~GKSTlL 339 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTL 339 (771)
T ss_pred eEEEEECCCCCCchHHH
Confidence 45667899999999988
No 391
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=54.73 E-value=4.6e+02 Score=31.66 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 550 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 550 ~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+..++.++.+..+...+++.++.....+|...+..|..|+..+..
T Consensus 246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~ 290 (384)
T PF03148_consen 246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRD 290 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555556666677777777777777777777765544
No 392
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.25 E-value=9.4 Score=45.79 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.2
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467888999999999998
No 393
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.11 E-value=2.3e+02 Score=30.93 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHHhhHHHhHHHHHHHHHHHH--
Q 001007 480 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKA---------WKVSFTLQSDLKSENYMLADKHKIEKE-- 548 (1191)
Q Consensus 480 ~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~---------~k~~~eLq~dL~~e~~~l~~k~k~~kE-- 548 (1191)
+..+.......+....-+.+|+..+......|..++..+... +....+-..+|+.-...|++....-.+
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~ 80 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA 80 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 549 -QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 549 -~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.|.-|+.++.+.....+.+...+..+......++.++..-+.....
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 394
>PRK00295 hypothetical protein; Provisional
Probab=53.84 E-value=79 Score=29.18 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
+.+.+|+.+++......++++..+.+.+.+|..|++++..|..+++..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666667776666777777777777888888888888887777654
No 395
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.78 E-value=6.7 Score=46.34 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=23.2
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 207 V~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++..+..++ +.|+-.|.||||||+++.
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 345666666666 778899999999999873
No 396
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=53.70 E-value=5.1e+02 Score=31.86 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001007 623 GMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 663 (1191)
Q Consensus 623 ~~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ka~ 663 (1191)
..+-...+.||+--+++..++|...+..-+-+-..|..|.+
T Consensus 280 i~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~ 320 (421)
T KOG2685|consen 280 IRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEG 320 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccc
Confidence 34444567788888888888888888888888888888833
No 397
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.68 E-value=1.2e+02 Score=28.21 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 542 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 542 k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
....++.+|..++.++..+......+.+++....+.|+.+..++..|+
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 334445555566666655555555555555555556666655555554
No 398
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=53.67 E-value=9.3 Score=48.73 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=51.3
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCC---CCCChH----HHHHHHHHHhhccC
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLY----ARCFEELFDLSNSD 260 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~---~~~GII----PRale~LF~~i~~~ 260 (1191)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.-- ..+-|| .....+|++.+...
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444557788888887765 455555564222 268999999999996511 112111 12234444433221
Q ss_pred cccccccceeEEEEEEechhh
Q 001007 261 TTATARFNFAVTVFELYNEQL 281 (1191)
Q Consensus 261 ~~~~~~f~V~VS~lEIYNE~V 281 (1191)
- +...+.+.||||.-|.-..
T Consensus 78 ~-p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 F-PENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred C-CCCeEEEEeeecccCCccc
Confidence 1 2334677899998886554
No 399
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.54 E-value=4.3e+02 Score=30.92 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 568 KMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 568 k~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.-++......|+.|+.++..++.+|..
T Consensus 101 EgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 101 EGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666666655543
No 400
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.03 E-value=3.7e+02 Score=30.08 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001007 569 MQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 569 ~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
..+++....+...+.+.+.|+.
T Consensus 118 k~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443
No 401
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.83 E-value=4.6e+02 Score=32.12 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 58 KQALSTKVQRLKDEIKFVKE 77 (1191)
Q Consensus 58 k~~l~~~v~~Lk~~l~~~~~ 77 (1191)
...+.+||..+++.|+..+.
T Consensus 6 ~~~l~~Ki~~~~eqi~~e~~ 25 (395)
T PF10267_consen 6 IDHLQQKILKLKEQIKVEQT 25 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888875553
No 402
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=52.75 E-value=7.2 Score=41.37 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=20.0
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 207 V~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555543 2345667999999999873
No 403
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=52.67 E-value=8.2 Score=45.50 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 197 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 197 ~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..|..+|+.|-..+.. .+| ..+|.-|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 34689999987433333 344 46688999999999987
No 404
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=52.65 E-value=5.7e+02 Score=32.09 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
.|.++++.+.+.-.++..|..+|-.-|..
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56666777777777777888887777744
No 405
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.57 E-value=1.7e+02 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
++.+++.....+..++.++.+.+.-+++.
T Consensus 15 ~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544443
No 406
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=51.67 E-value=5.7 Score=42.37 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.1
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999983
No 407
>PRK02119 hypothetical protein; Provisional
Probab=51.63 E-value=1e+02 Score=28.93 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
+.+.+.+|+.+++......++++..+.+.+..|..|++++..|..++++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666677777666777777777777888888888888887777553
No 408
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.39 E-value=25 Score=42.01 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=44.2
Q ss_pred hcccCCCCEEEEEeeCCCCCCCC--C-ceEeec-CCcE-EEEecCCCcc------CCCCceeecceeeCCCCChhhHHhc
Q 001007 138 DLLTAKGNIKVFCRTRPLFEDEG--P-SVVEFT-DDCT-IRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSD 206 (1191)
Q Consensus 138 ~l~elkGnIRV~~RVRPl~~~E~--~-svV~~~-d~~t-I~v~~~~~~~------~~~~k~F~FD~VF~p~asQeeVFee 206 (1191)
-++-..++-+.+|++.+..+.+. + ..|-.. +..+ +.+.++.... ....-.-+|+.|=|-+..-+++.+.
T Consensus 87 ~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~ 166 (406)
T COG1222 87 AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREV 166 (406)
T ss_pred EEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHH
Confidence 34555566677888888765431 1 112221 1222 2222221110 0011223344444433334445554
Q ss_pred h-HHhHhh-hcC--Ccc--EEEEeeccCCCCccc
Q 001007 207 V-QPFVQS-ALD--GYN--VSIFAYGQTHSGKTH 234 (1191)
Q Consensus 207 V-~PLV~s-vLd--GyN--~~IfAYGQTGSGKTy 234 (1191)
| -||.+- .|. |.. --|+-||+.|+|||-
T Consensus 167 VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 167 VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 4 344332 111 332 347889999999974
No 409
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=51.37 E-value=9.5 Score=43.25 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=42.8
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccE-EEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV-SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATA 265 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~-~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~ 265 (1191)
...+|...+-+...+.+.+.+.. ++.|..+ .++-||..|+|||.++- .++......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~----Fl~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~----- 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ----FLQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQ----- 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH----HHcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhc-----
Confidence 34566666666555555555544 4555432 25559999999998872 222222111
Q ss_pred ccceeEEEEEEechhhhcc
Q 001007 266 RFNFAVTVFELYNEQLREL 284 (1191)
Q Consensus 266 ~f~V~VS~lEIYNE~V~DL 284 (1191)
.+.++||..+.+.||
T Consensus 80 ----GLRlIev~k~~L~~l 94 (249)
T PF05673_consen 80 ----GLRLIEVSKEDLGDL 94 (249)
T ss_pred ----CceEEEECHHHhccH
Confidence 167789988877665
No 410
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.11 E-value=4.4e+02 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=10.5
Q ss_pred hhhhhhhccCCCCCCC
Q 001007 966 AIMDGWMAGLGGAVPP 981 (1191)
Q Consensus 966 ~~~~~~~~~~~~~~~~ 981 (1191)
-|-.-|.--||.|++-
T Consensus 676 wigneWLPslGLpQYr 691 (916)
T KOG0249|consen 676 WIGNEWLPSLGLPQYR 691 (916)
T ss_pred eeccccccccCchHHH
Confidence 3445678888877654
No 411
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=51.11 E-value=6.1e+02 Score=32.05 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=16.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 51 PHSSEISKQALSTKVQRLKDEIKFVKE 77 (1191)
Q Consensus 51 ~~~~~~~k~~l~~~v~~Lk~~l~~~~~ 77 (1191)
.+...+.+.+|..-+..|+.++..++.
T Consensus 8 ~Qd~~k~~~Ql~~~~~~lqaev~~lr~ 34 (531)
T PF15450_consen 8 EQDTLKRWKQLEQWVAELQAEVACLRG 34 (531)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666777777777777766553
No 412
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.09 E-value=3.7e+02 Score=29.47 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 549 ~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
+...+..++..+.+.......++.++...+..++.+|.+++.+......+
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666667777777777776666554444
No 413
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=50.91 E-value=5.3 Score=45.73 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.2
Q ss_pred HHHhhhCCCCcccccchhhccchhhHH
Q 001007 733 LTAALNDFNPEQYDNLAVISDGANKLL 759 (1191)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1191)
-.||+.--||.+|| ||+-|||||.=
T Consensus 189 ylAai~~Idpt~YE--AA~vDGA~rwq 213 (309)
T COG4209 189 YLAAIAGIDPTLYE--AAMVDGASRWQ 213 (309)
T ss_pred HHHHHHcCCHHHHH--HHHcccHHHHH
Confidence 35899999999999 89999999963
No 414
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=50.61 E-value=7 Score=45.82 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.0
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 207 V~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++..++.+. ..|+..|.||||||.+|.
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 445566555443 336778999999999983
No 415
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=50.55 E-value=5.2 Score=49.23 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=0.0
Q ss_pred CCCEEEEEeeCCCCCCC
Q 001007 143 KGNIKVFCRTRPLFEDE 159 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E 159 (1191)
.+|--||.+-||.....
T Consensus 61 ~~~~d~ffvtr~~l~~~ 77 (495)
T PF12004_consen 61 PENKDLFFVTRPPLARS 77 (495)
T ss_dssp -----------------
T ss_pred CCCCcceeeccCCCCCC
Confidence 46778899999976544
No 416
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.53 E-value=7.4 Score=38.49 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999875
No 417
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=50.43 E-value=2.5e+02 Score=27.39 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001007 581 LQAKINSIES 590 (1191)
Q Consensus 581 Lq~eIeeLE~ 590 (1191)
+...|..+++
T Consensus 85 ~~~~l~~~Ek 94 (96)
T PF08647_consen 85 FVRKLKNLEK 94 (96)
T ss_pred HHHHHHHhhc
Confidence 4444444443
No 418
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=50.40 E-value=15 Score=47.92 Aligned_cols=36 Identities=36% Similarity=0.400 Sum_probs=27.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHh
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 256 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~ 256 (1191)
.+..+.+|+|+.|.| +||||||-+-| +| ++..|+..
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~ 65 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSL 65 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhc
Confidence 455667999999987 99999998763 33 56666654
No 419
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.26 E-value=3.3e+02 Score=35.33 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 633 LEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 633 LEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
..+-+.+.+..++.++++-.+.++++.+-
T Consensus 224 s~etl~~L~~~v~~l~~~k~qr~~kl~~l 252 (660)
T KOG4302|consen 224 SDETLDRLDKMVKKLKEEKKQRLQKLQDL 252 (660)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777777777776554
No 420
>PRK04325 hypothetical protein; Provisional
Probab=50.10 E-value=1e+02 Score=28.91 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
.+.+.+|+.+++-.....++++..+.+.+.+|..|++++..|..++++.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777888888888888887777553
No 421
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.06 E-value=96 Score=28.95 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
.+.+.+|+.+++-.....++++..+.+.+..|..|+.++..|..++.+.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777777777777788888888888888888777553
No 422
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=49.97 E-value=9.4 Score=38.36 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.7
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
.++..|.||||||.++.
T Consensus 26 ~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 26 DVILAAPTGSGKTLAAL 42 (201)
T ss_pred cEEEECCCCCchhHHHH
Confidence 34567899999999884
No 423
>PTZ00424 helicase 45; Provisional
Probab=49.88 E-value=8.5 Score=45.02 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=20.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.|+. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4566778999864 5689999999875
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.81 E-value=8.6 Score=46.02 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=23.8
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|+.+...-.++..-+-.+.-..++-||++|+|||++..
T Consensus 17 q~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 17 QEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 55565542333333334554566669999999998773
No 425
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.63 E-value=7.3 Score=44.43 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=14.0
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999984
No 426
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=49.51 E-value=10 Score=48.90 Aligned_cols=81 Identities=20% Similarity=0.383 Sum_probs=47.5
Q ss_pred hhhhhhhccCChhhhHHHHHHHHhhcccccccccCCCCCCcccchhhhHHhhhhhhhccCCCCCCCCchhhhhhHHHHHH
Q 001007 916 KALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAK 995 (1191)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 995 (1191)
|.+-++..-+|+--+.|. .|+-+-|. ++-+.= ++-+.--+ .+.-++|- ++| -+|++||-+
T Consensus 1088 ~~~r~~l~s~p~t~~kr~--~~~~~r~~--~~v~~l----iek~i~tr-~sL~~~W~------~np-----~~l~ee~~~ 1147 (1172)
T KOG0926|consen 1088 KSFRALLLSKPETLTKRE--AWVLPRVG--SLVMVL----IEKKIDTR-ESLKKQWN------LNP-----NVLLEEYQN 1147 (1172)
T ss_pred ccchhhhcCCcchhHHHH--HHHhHHHH--HHHHHH----hhhccchH-hhhhhhhc------CCh-----HHHHHHHHH
Confidence 445566677787666553 45544332 211100 00000000 13457774 344 379999999
Q ss_pred HHhhhhhhhhhhhhhhccccc
Q 001007 996 RVYNSQLQHLKDIAGTLATED 1016 (1191)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~~ 1016 (1191)
-+|+.-.+.++|.=-|+--||
T Consensus 1148 ~~~~~~~~~~~~lw~~~~~~e 1168 (1172)
T KOG0926|consen 1148 WFWKVFRHRVKDLWPPMLKEE 1168 (1172)
T ss_pred HHHHHHHHHhhhcCCCccccc
Confidence 999999999999888776655
No 427
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=49.46 E-value=8.9 Score=43.55 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.1
Q ss_pred CCc-cEEEEeeccCCCCcccccc
Q 001007 216 DGY-NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 216 dGy-N~~IfAYGQTGSGKTyTM~ 237 (1191)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 4567779999999999874
No 428
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=49.38 E-value=6.9 Score=46.18 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=20.9
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 207 V~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++..++.+ ...|+..|.||||||++|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44556555542 2346778999999999984
No 429
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=49.31 E-value=9.6 Score=49.18 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=26.4
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+||.+++ |+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555544 44444332233222334544567789999999999874
No 430
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=49.30 E-value=89 Score=36.82 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=34.5
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 529 QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 529 q~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
...|.++..-+.-.+..++..+.++..++..-....++...+++...-++..|+.+.++|+..|+
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333334444555555555555555555555555566666666666666666655443
No 431
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.22 E-value=2e+02 Score=37.37 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=3.9
Q ss_pred hhccccccc
Q 001007 939 AENFEFLSV 947 (1191)
Q Consensus 939 ~~~~~~~~~ 947 (1191)
.+.|||+-+
T Consensus 653 ~~~yD~IiI 661 (754)
T TIGR01005 653 RLYSDCVVV 661 (754)
T ss_pred HhhCCEEEE
Confidence 344444443
No 432
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=49.08 E-value=10 Score=39.82 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=18.3
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++.++.|+| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3444555887 567789999999874
No 433
>PRK00736 hypothetical protein; Provisional
Probab=49.01 E-value=1e+02 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
+.+.+|+.+++......++++..+.+.+..|..|++++..|..++...
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666677777777777888888888888887777553
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=48.91 E-value=3.3e+02 Score=34.48 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=13.4
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|.|+ -.|.||||||-.|
T Consensus 22 ~glnv---itGetGaGKS~il 39 (553)
T PRK10869 22 SGMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CCcEE---EECCCCCChHHHH
Confidence 35554 5799999998655
No 435
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=48.83 E-value=9.7 Score=45.91 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=19.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| ++..++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34556678988 566789999999764
No 436
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=48.75 E-value=5.4e+02 Score=35.89 Aligned_cols=20 Identities=55% Similarity=0.755 Sum_probs=17.3
Q ss_pred hcchhhhhhhhccCChhhhHHHHHHHHhhcc
Q 001007 912 ATGNKALAALFVHTPAGELQRQIRSWLAENF 942 (1191)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1191)
.-|-|.||+|- ||--|||+|
T Consensus 1185 SAGQKvLAsli-----------IRLALAEtf 1204 (1294)
T KOG0962|consen 1185 SAGQKVLASLI-----------IRLALAETF 1204 (1294)
T ss_pred cchHHHHHHHH-----------HHHHHHHHH
Confidence 45888999986 899999999
No 437
>PRK06547 hypothetical protein; Provisional
Probab=48.65 E-value=12 Score=39.70 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.3
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++..+..+.--.|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555566666777899999999875
No 438
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.27 E-value=3.4e+02 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 566 EQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 566 Elk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
+.+..+.+....++.++..+..|+.
T Consensus 93 ~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 93 EVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 439
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=47.88 E-value=50 Score=39.47 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 557 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 557 l~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
+.++.+...++...+.+.++.+..++.++..++..++
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLD 182 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444443333
No 440
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=47.62 E-value=14 Score=43.58 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.7
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 207 V~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456666666654 678889999999998773
No 441
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.44 E-value=2.7e+02 Score=28.36 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 568 KMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 568 k~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
..+++.....+..++.++.+.+.-+.+
T Consensus 20 q~~l~~~~~q~~~le~q~~e~~~~~~E 46 (121)
T PRK09343 20 QQQLERLLQQKSQIDLELREINKALEE 46 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555544443
No 442
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=47.21 E-value=7.9e+02 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 001007 637 LKKRDALIERLHEENEKLFDRLT 659 (1191)
Q Consensus 637 Lkkrd~~ieqL~eEneKL~~rl~ 659 (1191)
..+...+++.++.++.-|++++.
T Consensus 641 ~~rl~~rlqelerdkNl~l~rl~ 663 (739)
T PF07111_consen 641 GQRLTQRLQELERDKNLMLQRLL 663 (739)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 34455566667777777776653
No 443
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=46.85 E-value=7.7e+02 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEAND 509 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~~ 509 (1191)
++....+.|.+|+--|+.-+..|...++
T Consensus 133 qVeaQgEKIrDLE~cie~kr~kLnatEE 160 (861)
T KOG1899|consen 133 QVEAQGEKIRDLETCIEEKRNKLNATEE 160 (861)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhchHHH
Confidence 4455566677777766666666554443
No 444
>PRK04195 replication factor C large subunit; Provisional
Probab=46.75 E-value=12 Score=45.80 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=26.5
Q ss_pred hhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGy-N~~IfAYGQTGSGKTyTM 236 (1191)
|..+-+.+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4444445566666666665 456788999999999887
No 445
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=46.24 E-value=8.5 Score=36.92 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 446
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=46.12 E-value=1e+03 Score=33.48 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.++++++.+..++.++..+.+.+.+
T Consensus 879 ~~~qle~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666555555443
No 447
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=46.06 E-value=10 Score=40.61 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=15.4
Q ss_pred CccEEEEeeccCCCCccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM 236 (1191)
..-..||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34568999999999999877
No 448
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.04 E-value=1.8e+02 Score=36.99 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
.++.+.++..+++.+++.--.+=+++|.++
T Consensus 241 ~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 241 DLQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHHhHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 334444444555555555555556666655
No 449
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.81 E-value=3.5e+02 Score=27.67 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L 504 (1191)
..++.|+.++..|...+
T Consensus 13 ~~~~~l~~~~~~l~~~~ 29 (140)
T PRK03947 13 AQLQALQAQIEALQQQL 29 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 450
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=45.66 E-value=5.4e+02 Score=29.79 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 578 IKTLQAKINSIESQRNE 594 (1191)
Q Consensus 578 Ie~Lq~eIeeLE~qL~e 594 (1191)
.+..+.++..|+.+++.
T Consensus 279 ~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 279 KEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp HCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666666543
No 451
>PLN02939 transferase, transferring glycosyl groups
Probab=45.61 E-value=9.7e+02 Score=32.76 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 553 LRNQVAQLLQLEQEQKMQIQQ---RDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 553 L~~ql~qLlq~eeElk~qlqq---~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
+++++..+.........+..+ .-++.+.|++++..||..|.++...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVS 346 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHh
Confidence 555555555444443333322 2345677888888888888765544
No 452
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.44 E-value=2.2e+02 Score=35.49 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 487 EKEIQDLKQEILGLRQALKEANDQCVLL 514 (1191)
Q Consensus 487 e~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l 514 (1191)
...+.+|++++..++.++....++...+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666655555444333
No 453
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.38 E-value=6.6e+02 Score=30.76 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE~qL 592 (1191)
+.+.++..++.++.+++.++
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~ 259 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQK 259 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445554444444
No 454
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=45.27 E-value=7.5 Score=37.72 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 455
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=45.25 E-value=4.7e+02 Score=29.01 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 548 E~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+....+..++..+.....+++.++..++.+++..+.+-..|.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555555554444443
No 456
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.11 E-value=12 Score=44.76 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=20.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34556678887 778899999999875
No 457
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=45.11 E-value=2.3e+02 Score=27.72 Aligned_cols=64 Identities=25% Similarity=0.372 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q 001007 62 STKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARIS 126 (1191)
Q Consensus 62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~~e~e~r~~ 126 (1191)
..+...|++.+..++.....|.+....++.+. ..++.+...+..|.+.+..|++...+.|.+++
T Consensus 34 ~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l-~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 34 SLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL-QQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666666666666666665543 34456666777777777777777777666543
No 458
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=45.09 E-value=11 Score=48.12 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=24.9
Q ss_pred HHhchHHhHhhh-cCCccEEEEeeccCCCCccccc
Q 001007 203 LFSDVQPFVQSA-LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 203 VFeeV~PLV~sv-LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
||.........+ ..|.|-||+-.|.+|||||.|+
T Consensus 68 if~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 68 IFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cchhhhcccccccccccccceeeccccccccccch
Confidence 555433333333 2589999999999999999997
No 459
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=45.08 E-value=19 Score=40.59 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=28.8
Q ss_pred eCCCCChhhHHhchHHhHhhhcC-C-ccEEEEeeccCCCCccccc
Q 001007 194 YGPHVGQAELFSDVQPFVQSALD-G-YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 194 F~p~asQeeVFeeV~PLV~svLd-G-yN~~IfAYGQTGSGKTyTM 236 (1191)
|++-..|+.+-...+.+++.+.. | .-..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 33445699999888888888764 2 2234677999999998654
No 460
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.02 E-value=3.5e+02 Score=32.54 Aligned_cols=12 Identities=42% Similarity=0.517 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHH
Q 001007 756 NKLLMLVLAAVI 767 (1191)
Q Consensus 756 ~~~~~~~~~~~~ 767 (1191)
|+.+.++++.|+
T Consensus 395 ~~~~~l~~~~~~ 406 (444)
T TIGR03017 395 RLLLNLVLSIFL 406 (444)
T ss_pred chHHHHHHHHHH
Confidence 555555544443
No 461
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=45.00 E-value=12 Score=41.21 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.0
Q ss_pred ccEEEEeeccCCCCccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1191)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4558999999999999876
No 462
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.74 E-value=9.3e+02 Score=32.30 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=21.3
Q ss_pred cEEEEeeccCCCCccccc-------ccCCCCCChHHHHHHHHHH
Q 001007 219 NVSIFAYGQTHSGKTHTM-------EGSSHDRGLYARCFEELFD 255 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM-------~Gs~~~~GIIPRale~LF~ 255 (1191)
++..+-+|+||||||.-+ ||...-.| +...+++..
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~ 66 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIR 66 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHh
Confidence 344567899999998654 66554333 344444443
No 463
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.64 E-value=4.6e+02 Score=28.71 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.++++..+......++....-|-.|+.-+..
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344445555555555555556566555543
No 464
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=44.48 E-value=7.5 Score=43.11 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=19.5
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHH
Q 001007 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFD 255 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~ 255 (1191)
.+..++..|..|||||+|| +.|++.-|..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l---------~~ri~~ll~~ 40 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL---------LERIAYLLYE 40 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH---------HHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCchHHH---------HHHHHHhhcc
Confidence 4556677788999999998 3566555543
No 465
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=44.32 E-value=12 Score=43.38 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=24.8
Q ss_pred ChhhHHhchHHhHhhhcC--CccEEEEeeccCCCCcccccc
Q 001007 199 GQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLd--GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.|+++-+.+..++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 455555555555554432 222356779999999999884
No 466
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=44.25 E-value=2.2e+02 Score=30.33 Aligned_cols=89 Identities=27% Similarity=0.253 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q 001007 54 SEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ-------EYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARIS 126 (1191)
Q Consensus 54 ~~~~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q-------~~~~~~l~~v~~~l~~L~~~~~~l~~~~~e~e~r~~ 126 (1191)
.|.-|.....+|+..-..+.........++.++.-+. +....+++.+.++|.-|...+.+-+..+.++-+.+.
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666555555555555566666554432 234456778888888888777777777777777777
Q ss_pred hhHHHHhhhhhhcccC
Q 001007 127 PLINEKKRLFNDLLTA 142 (1191)
Q Consensus 127 ~~~~eRrkLhN~l~el 142 (1191)
...+++-.|-+.|.++
T Consensus 123 EknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMEL 138 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777664
No 467
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.00 E-value=12 Score=44.54 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=19.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.|+ ++.++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 445567889985 45669999999875
No 468
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=43.99 E-value=11 Score=39.91 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56888999999999965
No 469
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=43.89 E-value=14 Score=47.26 Aligned_cols=30 Identities=30% Similarity=0.204 Sum_probs=20.5
Q ss_pred hHHhHhhhcC-----CccEEEEeeccCCCCcccccc
Q 001007 207 VQPFVQSALD-----GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 207 V~PLV~svLd-----GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|..+++.+.. |.+..++.. .||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 4556666655 344555443 89999999995
No 470
>PTZ00121 MAEBL; Provisional
Probab=43.76 E-value=1.1e+03 Score=33.63 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=12.2
Q ss_pred hHHHHHHHHhhcccccc
Q 001007 930 LQRQIRSWLAENFEFLS 946 (1191)
Q Consensus 930 ~~~~~~~~~~~~~~~~~ 946 (1191)
|=..|..++---|+|-|
T Consensus 1974 LCCSISdYCLkYFn~nS 1990 (2084)
T PTZ00121 1974 LCCSISDFCLKYFDHNS 1990 (2084)
T ss_pred hhhhHHHHHHHHcCCCc
Confidence 44578888888887744
No 471
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=43.73 E-value=16 Score=42.91 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.4
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
-.+-||+.|+|||.|..
T Consensus 59 ~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTAL 75 (346)
T ss_pred eEEeeCCCCCcHhHHHH
Confidence 35679999999999973
No 472
>PRK13764 ATPase; Provisional
Probab=43.58 E-value=10 Score=47.91 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.1
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3448999999999999984
No 473
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=43.57 E-value=5.3e+02 Score=29.16 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~ 599 (1191)
-+....+.+++..+.+...+....+..+...+..|+.+|.+++.+....+.+.
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666667777777777777777777777666544443
No 474
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.25 E-value=9.6 Score=37.89 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.5
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999887
No 475
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=43.22 E-value=9.5e+02 Score=31.99 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
+.++.....+.+.++..|..+++.+++
T Consensus 122 i~~l~~~~~~~e~~~~~l~~~l~~~ek 148 (769)
T PF05911_consen 122 IAELSEEKSQAEAEIEDLMARLESTEK 148 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444445555555555555553
No 476
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.15 E-value=3.8e+02 Score=27.38 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 481 KELYEREKEIQDLKQEILGLRQALKE 506 (1191)
Q Consensus 481 ~el~~le~eI~~Lk~Ei~~Lk~~L~~ 506 (1191)
..+..+..++..|...+..|...+..
T Consensus 13 ~~~~~l~~~~~~l~~~~~~l~~~~~e 38 (140)
T PRK03947 13 AQLQALQAQIEALQQQLEELQASINE 38 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 477
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=43.11 E-value=13 Score=46.21 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.4
Q ss_pred chHHhHhhhcCCcc--EEEEeeccCCCCccccc
Q 001007 206 DVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 206 eV~PLV~svLdGyN--~~IfAYGQTGSGKTyTM 236 (1191)
+|+..++..+.|.. ..++-+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777777766653 46788999999999998
No 478
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.05 E-value=3.2e+02 Score=29.51 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001007 637 LKKRDALIERLHEENEKLFDR 657 (1191)
Q Consensus 637 Lkkrd~~ieqL~eEneKL~~r 657 (1191)
+.+..+.+..+++++..|+.=
T Consensus 127 ~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 127 LEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 479
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.83 E-value=3e+02 Score=26.04 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 497 ILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDS 576 (1191)
Q Consensus 497 i~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~ 576 (1191)
+++|+..++.+-+....+.-|+ +.++|++..+......+.+..+.+..+.+++.+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEi-------------------------eELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEI-------------------------EELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 001007 577 TIKTLQAKINSI 588 (1191)
Q Consensus 577 eIe~Lq~eIeeL 588 (1191)
+-..-+.+|..|
T Consensus 61 e~~~WQerlrsL 72 (79)
T COG3074 61 EQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHH
No 480
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.54 E-value=7.2e+02 Score=30.41 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 511 CVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 511 ~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
...+..|+++..+-...++...+.-...++...+-+-+.+++.+=+.+.| +++++...+-.+.+|.+|+.++..++.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erL---EEqLNdlteLqQnEi~nLKqElasmee 338 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERL---EEQLNDLTELQQNEIANLKQELASMEE 338 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcccccccccCCCCCcccccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 591 QRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDR 657 (1191)
Q Consensus 591 qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~~~~~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~r 657 (1191)
...=+.-.-.. |+-+.-+-....+-+++-+..+..-.+.+..+.
T Consensus 339 rvaYQsyERaR-----------------------dIqEalEscqtrisKlEl~qq~qqv~Q~e~~~n 382 (455)
T KOG3850|consen 339 RVAYQSYERAR-----------------------DIQEALESCQTRISKLELQQQQQQVVQLEGLEN 382 (455)
T ss_pred HHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 481
>PRK00846 hypothetical protein; Provisional
Probab=42.36 E-value=2.2e+02 Score=27.28 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~ 596 (1191)
+...+.+|+.+++-.....++++..+...+..|..|+.++..|..+|++..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666667777777777788888888888877776544
No 482
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.97 E-value=1e+03 Score=31.96 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=3.9
Q ss_pred CCcccccc
Q 001007 230 SGKTHTME 237 (1191)
Q Consensus 230 SGKTyTM~ 237 (1191)
-|++|.+.
T Consensus 81 ~g~~Y~i~ 88 (908)
T COG0419 81 NGKKYRIE 88 (908)
T ss_pred CCEEEEEE
Confidence 35555553
No 483
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.88 E-value=5.7e+02 Score=29.07 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=26.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 531 DLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 531 dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.|.....+....-..+..++.+....+.++....+....+...++.++...+......+..|..
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334445555555555555544444455555555665556555555555533
No 484
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.72 E-value=15 Score=44.45 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=20.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 44566788998 567789999999875
No 485
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.60 E-value=14 Score=41.73 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=21.5
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
|.++-+.+...+. .|....++-||+.|+|||+++
T Consensus 22 ~~~~~~~l~~~i~---~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 22 QEEIVERLKSYVK---EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3444444443333 344444677999999999887
No 486
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.46 E-value=3.5e+02 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+...+...+..+..++.++.+++.++++
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544
No 487
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.29 E-value=12 Score=44.74 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=15.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
...|.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3456679999999999983
No 488
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=41.17 E-value=6.2e+02 Score=29.28 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHH-------hHHHHHHhhcccc
Q 001007 426 ESSKTLMIVNICPNAANMSETLSS-------LNFSSRARSTVLS 462 (1191)
Q Consensus 426 GNSKTlMIv~ISPs~~~~eETLsT-------LrFAsRAr~I~~~ 462 (1191)
|++.-++|..--++...+.+-.+| +-||..+|..+.+
T Consensus 102 ~d~q~LVvlss~~se~~~s~~r~~~p~pAPP~~FAD~mRtlv~p 145 (311)
T PF04642_consen 102 GDPQDLVVLSSRESETRESERRSTSPLPAPPMPFADTMRTLVHP 145 (311)
T ss_pred CCCcceEEecccchhhhhhccccCCCCCCCCccHHHHHHhhcCC
Confidence 445666666666777777777777 7899988887643
No 489
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=41.14 E-value=5.6e+02 Score=28.72 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 632 KLEEELKKRDALIERLHEENEKLF 655 (1191)
Q Consensus 632 KLEEeLkkrd~~ieqL~eEneKL~ 655 (1191)
-|++.|.+.....+.|-..++.|.
T Consensus 179 SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 179 SLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455545544444444443
No 490
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.12 E-value=4.8e+02 Score=28.00 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 481 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 560 (1191)
Q Consensus 481 ~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qL 560 (1191)
.++..+..+..+|..+..+-+......+.++..++..+....+.....-..+..++..+..+.+...++...+..+-.++
T Consensus 50 ~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l 129 (158)
T PF09744_consen 50 VELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAEL 129 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 561 LQLEQEQKMQIQQRDSTIKTLQAKINS 587 (1191)
Q Consensus 561 lq~eeElk~qlqq~e~eIe~Lq~eIee 587 (1191)
......+.....+.=.....+-.+...
T Consensus 130 ~~e~~~l~er~~e~l~~~~e~ver~k~ 156 (158)
T PF09744_consen 130 KKEYNRLHERERELLRKLKEHVERQKD 156 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=41.02 E-value=54 Score=42.18 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=25.9
Q ss_pred hHHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001007 202 ELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 202 eVFeeV~PLV~svL-dGyN~~IfAYGQTGSGKTyTM 236 (1191)
-||.-......+++ .|.|.||+.-|.+|||||.+.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 35554333334443 589999999999999999998
No 492
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.95 E-value=15 Score=44.44 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=30.2
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHT 235 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyT 235 (1191)
+||.|+| |+.+...-.|+=.-+-.|.-...+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4566655 777776555554445567777778899999999964
No 493
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.82 E-value=5.5e+02 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 557 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 557 l~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
+..|.+.-.+.-...-+.+..+..|+.+|..++.+..
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444555556666666666666665443
No 494
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=40.70 E-value=6.8e+02 Score=29.62 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKE 506 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~ 506 (1191)
.+..+..++..|..|+..|...|..
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 3344555555666666655555543
No 495
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.41 E-value=2.2e+02 Score=31.64 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhhHHHhHHHHHH----------HHHHHHHHHHHHHHH
Q 001007 489 EIQDLKQEILGLRQALKEANDQCVL-LYNEVQKAWKVSFTLQSDLKSENYMLADK----------HKIEKEQNAQLRNQV 557 (1191)
Q Consensus 489 eI~~Lk~Ei~~Lk~~L~~~~~q~~~-l~qElqk~~k~~~eLq~dL~~e~~~l~~k----------~k~~kE~~~qL~~ql 557 (1191)
|+-.|+.|+..|...+..++..... -...-.+..-.-.++++-|+.+...+... ++..++.++-.++|+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 558 AQLLQLEQEQKMQIQQRDS 576 (1191)
Q Consensus 558 ~qLlq~eeElk~qlqq~e~ 576 (1191)
.-|......-+.+++++++
T Consensus 177 ~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 496
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.30 E-value=2e+02 Score=32.92 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------------------------hhHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQS---------------------------DLKSE 535 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~---------------------------dL~~e 535 (1191)
+..++.++..+..++++.++....++.++.....+............. .-..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 536 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKIN 586 (1191)
Q Consensus 536 ~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIe 586 (1191)
.-++..+.+..+.++.+|++++.+..+....++.++..++..+..|=.++.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.30 E-value=5.3e+02 Score=28.22 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 001007 476 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRN 555 (1191)
Q Consensus 476 ~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ 555 (1191)
.+.+...+++....-..|.+-+..|+.+|+.+......|..++++.......+..++..+...|....+....-......
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~ 141 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHS 141 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 556 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 556 ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
++..|.....-.+-+..++....+ ..+..++.++
T Consensus 142 rll~LWr~v~~lRr~f~elr~~Te---rdL~~~r~e~ 175 (182)
T PF15035_consen 142 RLLSLWREVVALRRQFAELRTATE---RDLSDMRAEF 175 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHH
No 498
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.27 E-value=10 Score=46.40 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCceeecceeeCCCCChhhHHhchHHhHhhhc-----CCccEEEEeeccCCCCccccc
Q 001007 184 PKKDFEFDRVYGPHVGQAELFSDVQPFVQSAL-----DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 184 ~~k~F~FD~VF~p~asQeeVFeeV~PLV~svL-----dGyN~~IfAYGQTGSGKTyTM 236 (1191)
.....+||.|.+.+....++.+-+..+-..-. ....-.|+-||++|+|||+..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
No 499
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.23 E-value=1.7e+02 Score=33.43 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhH---------------------------HHHHH
Q 001007 490 IQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENY---------------------------MLADK 542 (1191)
Q Consensus 490 I~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~---------------------------~l~~k 542 (1191)
+++|+.++..++..+.+...-...|++++................... .-..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 543 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 588 (1191)
Q Consensus 543 ~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeL 588 (1191)
+-+...+.+..+.+..+|.++...+..++..+..+++.|+.....|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.12 E-value=1.6e+02 Score=37.23 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 001007 530 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS 603 (1191)
Q Consensus 530 ~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~ 603 (1191)
.+++.-..-....+...+-+.++++..++++..++++++..+.+.+.++..|+.+|++.+.+++|....+....
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Done!