Query 001007
Match_columns 1191
No_of_seqs 495 out of 2350
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 3.5E-85 1.2E-89 752.6 30.9 342 118-463 33-401 (403)
2 3u06_A Protein claret segregat 100.0 6E-85 2.1E-89 751.8 30.7 336 124-464 39-387 (412)
3 2rep_A Kinesin-like protein KI 100.0 3.5E-82 1.2E-86 721.5 25.3 327 133-459 11-376 (376)
4 3cob_A Kinesin heavy chain-lik 100.0 1.1E-81 3.7E-86 715.9 27.9 342 140-504 1-354 (369)
5 2h58_A Kinesin-like protein KI 100.0 1.7E-80 5.9E-85 697.5 27.9 314 141-460 1-329 (330)
6 3t0q_A AGR253WP; kinesin, alph 100.0 1E-80 3.6E-85 703.9 25.7 319 140-462 1-347 (349)
7 3lre_A Kinesin-like protein KI 100.0 4.4E-80 1.5E-84 700.1 25.6 322 135-459 1-355 (355)
8 1f9v_A Kinesin-like protein KA 100.0 9.1E-80 3.1E-84 695.7 24.4 318 142-463 1-345 (347)
9 1bg2_A Kinesin; motor protein, 100.0 1.5E-79 5.3E-84 688.5 23.2 308 141-459 4-325 (325)
10 2vvg_A Kinesin-2; motor protei 100.0 2.1E-79 7E-84 693.2 24.0 319 143-464 3-340 (350)
11 2y65_A Kinesin, kinesin heavy 100.0 2.5E-79 8.6E-84 695.9 24.2 314 141-465 8-339 (365)
12 3bfn_A Kinesin-like protein KI 100.0 2.7E-79 9.2E-84 699.3 22.0 325 137-464 14-352 (388)
13 3b6u_A Kinesin-like protein KI 100.0 1.1E-78 3.7E-83 691.7 25.7 326 137-464 14-358 (372)
14 1v8k_A Kinesin-like protein KI 100.0 3.5E-79 1.2E-83 702.2 21.1 327 129-463 57-406 (410)
15 1goj_A Kinesin, kinesin heavy 100.0 1.9E-78 6.5E-83 686.6 26.2 318 141-465 3-336 (355)
16 3nwn_A Kinesin-like protein KI 100.0 1.2E-78 4E-83 689.1 24.2 316 141-459 21-359 (359)
17 2zfi_A Kinesin-like protein KI 100.0 1.7E-78 5.8E-83 689.6 24.8 319 143-463 3-358 (366)
18 2heh_A KIF2C protein; kinesin, 100.0 6.2E-79 2.1E-83 696.1 20.8 325 129-461 37-384 (387)
19 2wbe_C Bipolar kinesin KRP-130 100.0 1E-78 3.4E-83 692.8 22.1 321 140-465 19-367 (373)
20 1x88_A Kinesin-like protein KI 100.0 5.9E-79 2E-83 691.8 19.7 321 141-464 5-355 (359)
21 1t5c_A CENP-E protein, centrom 100.0 2.4E-77 8.1E-82 676.3 27.5 312 143-465 3-334 (349)
22 2nr8_A Kinesin-like protein KI 100.0 1.1E-77 3.8E-82 680.8 24.2 318 138-459 17-358 (358)
23 2owm_A Nckin3-434, related to 100.0 3.2E-77 1.1E-81 693.0 26.1 325 138-464 32-418 (443)
24 3gbj_A KIF13B protein; kinesin 100.0 2.3E-77 8E-82 677.6 22.9 314 144-458 1-349 (354)
25 4a14_A Kinesin, kinesin-like p 100.0 9.4E-77 3.2E-81 670.6 23.8 306 142-457 9-344 (344)
26 1ry6_A Internal kinesin; kines 100.0 1.2E-76 4.1E-81 672.8 22.6 315 145-463 1-335 (360)
27 3dc4_A Kinesin-like protein NO 100.0 3.1E-76 1.1E-80 665.9 25.4 304 141-464 19-340 (344)
28 4h1g_A Maltose binding protein 100.0 3.9E-73 1.4E-77 693.0 24.6 324 134-460 364-712 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 2.5E-31 8.6E-36 289.7 6.9 274 125-461 5-291 (298)
30 2kin_B Kinesin; motor protein, 99.9 8.4E-26 2.9E-30 214.3 3.0 80 386-465 2-82 (100)
31 3kin_B Kinesin heavy chain; mo 99.9 6.4E-25 2.2E-29 213.8 8.7 77 389-465 1-78 (117)
32 4etp_B Spindle POLE BODY-assoc 98.1 3.6E-05 1.2E-09 85.7 15.2 140 124-288 39-183 (333)
33 3oja_B Anopheles plasmodium-re 96.6 0.033 1.1E-06 66.3 16.9 26 433-458 391-416 (597)
34 3na7_A HP0958; flagellar bioge 96.5 0.2 7E-06 54.4 21.2 90 541-660 97-186 (256)
35 3na7_A HP0958; flagellar bioge 96.1 0.94 3.2E-05 49.2 23.3 27 631-657 146-172 (256)
36 3ghg_A Fibrinogen alpha chain; 95.9 0.17 5.8E-06 59.7 17.5 98 482-579 58-155 (562)
37 2v71_A Nuclear distribution pr 95.9 0.42 1.4E-05 50.3 18.9 37 468-504 11-47 (189)
38 3oja_B Anopheles plasmodium-re 95.6 0.061 2.1E-06 64.0 12.5 51 542-592 531-581 (597)
39 1i84_S Smooth muscle myosin he 95.3 0.05 1.7E-06 70.8 11.1 40 244-283 432-472 (1184)
40 1i84_S Smooth muscle myosin he 95.1 0.074 2.5E-06 69.2 12.1 6 426-431 769-774 (1184)
41 2fxo_A Myosin heavy chain, car 94.5 3.4 0.00012 40.6 19.5 107 488-594 13-122 (129)
42 3ec2_A DNA replication protein 94.5 0.0088 3E-07 60.0 1.0 52 186-237 5-56 (180)
43 3vkg_A Dynein heavy chain, cyt 93.7 3 0.0001 59.5 23.3 47 1105-1151 2981-3035(3245)
44 2v71_A Nuclear distribution pr 93.6 6.7 0.00023 41.3 20.4 22 640-661 159-180 (189)
45 2dfs_A Myosin-5A; myosin-V, in 93.6 1.4 4.9E-05 57.0 18.7 40 244-283 406-445 (1080)
46 2dfs_A Myosin-5A; myosin-V, in 93.2 1.6 5.4E-05 56.6 18.1 17 576-592 1023-1039(1080)
47 3vkg_A Dynein heavy chain, cyt 93.1 3.2 0.00011 59.2 22.0 34 485-518 1931-1964(3245)
48 2w58_A DNAI, primosome compone 93.1 0.032 1.1E-06 56.7 2.0 51 186-236 20-71 (202)
49 3o0z_A RHO-associated protein 92.5 10 0.00034 39.3 19.2 58 535-592 49-106 (168)
50 1deq_A Fibrinogen (alpha chain 92.4 11 0.00037 43.4 21.2 95 484-578 63-157 (390)
51 2qgz_A Helicase loader, putati 90.8 0.084 2.9E-06 58.5 2.2 51 187-237 120-170 (308)
52 4b4t_K 26S protease regulatory 89.8 1.3 4.3E-05 51.9 11.0 50 187-236 168-223 (428)
53 3u1c_A Tropomyosin alpha-1 cha 89.5 15 0.0005 34.9 16.0 51 539-589 49-99 (101)
54 4b4t_M 26S protease regulatory 89.1 0.57 1.9E-05 54.9 7.4 51 186-236 176-232 (434)
55 4b4t_J 26S protease regulatory 88.3 1.2 4.2E-05 51.8 9.3 50 187-236 144-199 (405)
56 3ghg_A Fibrinogen alpha chain; 86.5 7.6 0.00026 46.2 14.4 39 552-590 114-152 (562)
57 3oja_A Leucine-rich immune mol 86.4 4.9 0.00017 46.8 13.1 34 562-595 435-468 (487)
58 3u59_A Tropomyosin beta chain; 86.4 22 0.00075 33.5 15.5 51 539-589 49-99 (101)
59 3oja_A Leucine-rich immune mol 84.8 31 0.0011 40.0 18.8 34 564-597 444-477 (487)
60 2fxo_A Myosin heavy chain, car 84.4 32 0.0011 33.7 19.0 45 547-591 82-126 (129)
61 1m1j_A Fibrinogen alpha subuni 84.3 21 0.00072 41.9 16.4 91 485-575 62-152 (491)
62 1m1j_B Fibrinogen beta chain; 84.0 32 0.0011 40.7 18.2 26 569-594 168-193 (464)
63 3bos_A Putative DNA replicatio 83.8 0.39 1.3E-05 49.0 2.0 45 188-236 25-69 (242)
64 2bjv_A PSP operon transcriptio 83.3 0.27 9.3E-06 52.2 0.6 45 187-236 2-46 (265)
65 3hnw_A Uncharacterized protein 83.3 20 0.00068 35.9 13.9 48 547-594 88-135 (138)
66 3uk6_A RUVB-like 2; hexameric 81.9 0.53 1.8E-05 52.0 2.3 46 187-236 40-87 (368)
67 1f5n_A Interferon-induced guan 81.6 19 0.00065 43.8 15.7 64 528-591 513-582 (592)
68 1l8q_A Chromosomal replication 81.2 0.58 2E-05 51.2 2.3 49 186-236 6-54 (324)
69 3tnu_B Keratin, type II cytosk 80.6 33 0.0011 33.5 14.3 11 573-583 114-124 (129)
70 3tnu_A Keratin, type I cytoske 80.6 21 0.00072 35.1 12.9 12 573-584 116-127 (131)
71 4gkp_A Spindle POLE BODY-assoc 79.5 2.1 7.3E-05 47.3 5.9 128 135-289 4-135 (275)
72 2i1j_A Moesin; FERM, coiled-co 79.3 5.1 0.00018 48.5 9.7 109 486-594 340-451 (575)
73 4h22_A Leucine-rich repeat fli 78.8 13 0.00043 35.7 10.1 67 528-594 17-83 (103)
74 2kjq_A DNAA-related protein; s 78.4 0.69 2.4E-05 45.8 1.6 43 186-237 12-54 (149)
75 1jbk_A CLPB protein; beta barr 78.0 0.81 2.8E-05 44.4 1.9 29 208-236 32-60 (195)
76 2v1u_A Cell division control p 77.8 0.73 2.5E-05 50.6 1.7 46 191-236 15-61 (387)
77 3a7p_A Autophagy protein 16; c 77.7 26 0.00089 35.7 12.6 42 551-592 71-112 (152)
78 3o0z_A RHO-associated protein 77.4 71 0.0024 33.1 19.5 17 573-589 122-138 (168)
79 3h4m_A Proteasome-activating n 77.3 0.72 2.5E-05 49.1 1.4 51 186-236 12-68 (285)
80 1ixz_A ATP-dependent metallopr 77.2 0.84 2.9E-05 48.1 1.9 50 186-236 11-66 (254)
81 2r62_A Cell division protease 77.2 0.77 2.6E-05 48.6 1.6 51 186-236 6-61 (268)
82 1d2n_A N-ethylmaleimide-sensit 77.1 0.95 3.2E-05 48.3 2.2 21 216-236 61-81 (272)
83 2ocy_A RAB guanine nucleotide 76.8 70 0.0024 32.7 16.4 30 562-591 115-144 (154)
84 1m1j_B Fibrinogen beta chain; 76.7 65 0.0022 38.2 17.5 21 569-589 175-195 (464)
85 3q8t_A Beclin-1; autophagy, AT 76.3 52 0.0018 30.9 15.2 32 564-595 62-93 (96)
86 3ghg_B Fibrinogen beta chain; 76.2 48 0.0017 39.1 16.1 26 484-509 91-116 (461)
87 2z4s_A Chromosomal replication 75.2 1.2 4E-05 51.8 2.5 49 185-237 99-148 (440)
88 2c9o_A RUVB-like 1; hexameric 75.1 1.2 4.1E-05 51.8 2.6 46 187-236 33-80 (456)
89 2p65_A Hypothetical protein PF 75.0 0.91 3.1E-05 44.2 1.3 29 208-236 32-60 (187)
90 2jee_A YIIU; FTSZ, septum, coi 74.9 30 0.001 31.9 11.1 20 573-592 52-71 (81)
91 1lv7_A FTSH; alpha/beta domain 74.8 1.4 4.9E-05 46.4 2.8 51 186-236 7-62 (257)
92 3t15_A Ribulose bisphosphate c 74.0 1.3 4.4E-05 48.4 2.3 47 190-236 2-53 (293)
93 3te6_A Regulatory protein SIR3 73.5 0.94 3.2E-05 50.9 1.1 30 207-236 32-62 (318)
94 1g8p_A Magnesium-chelatase 38 72.6 0.99 3.4E-05 49.3 1.0 44 186-236 19-62 (350)
95 3mq7_A Bone marrow stromal ant 72.4 76 0.0026 31.1 15.2 22 640-661 90-111 (121)
96 1iy2_A ATP-dependent metallopr 70.7 1.9 6.3E-05 46.3 2.6 51 186-236 35-90 (278)
97 3cf0_A Transitional endoplasmi 70.4 1.3 4.6E-05 48.3 1.4 50 187-236 11-66 (301)
98 3ghg_C Fibrinogen gamma chain; 70.3 47 0.0016 38.7 14.1 27 483-509 33-59 (411)
99 2v66_B Nuclear distribution pr 70.2 83 0.0028 30.6 17.0 24 485-508 7-30 (111)
100 1qde_A EIF4A, translation init 69.8 1.7 5.8E-05 44.5 1.9 26 209-236 43-68 (224)
101 2qby_A CDC6 homolog 1, cell di 69.4 1.6 5.5E-05 47.7 1.8 37 200-236 25-62 (386)
102 1vec_A ATP-dependent RNA helic 69.0 1.9 6.6E-05 43.4 2.1 25 210-236 33-57 (206)
103 1fnn_A CDC6P, cell division co 68.9 1.5 5E-05 48.4 1.3 38 199-236 21-61 (389)
104 2qby_B CDC6 homolog 3, cell di 68.6 1.9 6.6E-05 47.5 2.2 38 199-236 24-62 (384)
105 3syl_A Protein CBBX; photosynt 68.4 2.2 7.5E-05 45.9 2.5 20 217-236 65-84 (309)
106 2qz4_A Paraplegin; AAA+, SPG7, 68.3 2.4 8.2E-05 44.2 2.7 19 218-236 38-56 (262)
107 2gxq_A Heat resistant RNA depe 68.2 1.9 6.5E-05 43.3 1.9 25 210-236 31-55 (207)
108 1deq_A Fibrinogen (alpha chain 67.4 77 0.0026 36.6 14.6 46 526-571 112-157 (390)
109 3i00_A HIP-I, huntingtin-inter 67.4 49 0.0017 32.4 11.5 23 485-507 12-34 (120)
110 3b9p_A CG5977-PA, isoform A; A 67.4 1.7 5.8E-05 46.6 1.4 51 186-236 16-71 (297)
111 1sxj_C Activator 1 40 kDa subu 67.1 1.9 6.7E-05 47.5 1.9 42 189-237 23-64 (340)
112 2chg_A Replication factor C sm 67.0 2 6.7E-05 42.7 1.7 34 200-236 22-55 (226)
113 1ic2_A Tropomyosin alpha chain 65.6 35 0.0012 30.9 9.5 28 565-592 30-57 (81)
114 2v4h_A NF-kappa-B essential mo 65.2 63 0.0022 31.3 11.4 30 489-518 25-54 (110)
115 4b4t_L 26S protease subunit RP 65.1 13 0.00046 43.5 8.4 50 187-236 177-232 (437)
116 3hnw_A Uncharacterized protein 65.0 41 0.0014 33.6 10.7 41 552-592 86-126 (138)
117 3dkp_A Probable ATP-dependent 64.9 2.4 8.2E-05 44.1 1.9 26 209-236 58-83 (245)
118 3bor_A Human initiation factor 64.7 1.6 5.6E-05 45.5 0.6 26 209-236 59-84 (237)
119 3d8b_A Fidgetin-like protein 1 64.1 2 6.7E-05 48.3 1.1 50 187-236 80-134 (357)
120 1p9r_A General secretion pathw 63.0 2.8 9.6E-05 48.7 2.2 29 209-237 157-185 (418)
121 2pl3_A Probable ATP-dependent 62.4 2.9 9.8E-05 43.3 1.9 25 210-236 55-79 (236)
122 3mq9_A Bone marrow stromal ant 62.2 1.4E+02 0.0049 34.3 16.3 23 565-587 446-468 (471)
123 3mq9_A Bone marrow stromal ant 61.9 1.2E+02 0.0042 34.8 15.7 25 570-594 444-468 (471)
124 1w5s_A Origin recognition comp 61.5 4.1 0.00014 45.2 3.2 33 204-236 31-69 (412)
125 3iuy_A Probable ATP-dependent 61.2 3.1 0.00011 42.8 1.9 26 209-236 49-74 (228)
126 2zqm_A Prefoldin beta subunit 61.1 85 0.0029 29.4 11.8 37 625-661 74-110 (117)
127 1t6n_A Probable ATP-dependent 60.7 3 0.0001 42.5 1.8 26 209-236 43-68 (220)
128 3co5_A Putative two-component 60.6 3.1 0.00011 40.3 1.7 33 204-237 13-45 (143)
129 1x79_B RAB GTPase binding effe 60.5 72 0.0025 31.0 11.0 81 64-144 7-98 (112)
130 1m1j_C Fibrinogen gamma chain; 60.3 56 0.0019 38.1 12.3 45 544-588 87-131 (409)
131 2jee_A YIIU; FTSZ, septum, coi 60.3 1.1E+02 0.0036 28.3 11.8 21 483-503 15-35 (81)
132 3b6e_A Interferon-induced heli 60.3 1.8 6.2E-05 43.5 -0.0 23 212-236 43-65 (216)
133 3pfi_A Holliday junction ATP-d 59.8 3.2 0.00011 45.4 1.8 44 189-236 27-72 (338)
134 3ol1_A Vimentin; structural ge 59.6 1E+02 0.0035 29.9 12.1 28 476-503 22-49 (119)
135 3iox_A AGI/II, PA; alpha helix 59.5 1.4E+02 0.005 35.5 15.4 23 485-507 6-28 (497)
136 3jvv_A Twitching mobility prot 59.4 2.9 9.8E-05 47.6 1.4 27 211-237 115-141 (356)
137 1wrb_A DJVLGB; RNA helicase, D 59.0 3.6 0.00012 43.1 1.9 26 209-236 52-77 (253)
138 2eqb_B RAB guanine nucleotide 58.6 1.3E+02 0.0043 28.7 13.7 27 478-504 9-35 (97)
139 1xwi_A SKD1 protein; VPS4B, AA 58.4 2.9 9.8E-05 46.4 1.2 49 188-236 9-62 (322)
140 3ly5_A ATP-dependent RNA helic 58.1 2.4 8.2E-05 45.2 0.5 26 209-236 83-108 (262)
141 3tnu_A Keratin, type I cytoske 57.6 1.5E+02 0.005 29.1 13.4 12 549-560 85-96 (131)
142 1fxk_A Prefoldin; archaeal pro 57.0 82 0.0028 29.1 10.7 26 569-594 15-40 (107)
143 1m1j_A Fibrinogen alpha subuni 57.0 1.9E+02 0.0065 34.2 15.6 48 547-594 110-157 (491)
144 1iqp_A RFCS; clamp loader, ext 56.5 5.2 0.00018 42.8 2.8 40 190-236 24-63 (327)
145 3eiq_A Eukaryotic initiation f 56.3 4.3 0.00015 44.9 2.1 26 209-236 69-94 (414)
146 1njg_A DNA polymerase III subu 56.2 4.7 0.00016 40.3 2.2 17 220-236 46-62 (250)
147 2oxc_A Probable ATP-dependent 56.1 4.3 0.00015 42.0 1.9 25 210-236 54-78 (230)
148 3fmo_B ATP-dependent RNA helic 55.4 4 0.00014 44.7 1.6 28 209-236 121-148 (300)
149 3pvs_A Replication-associated 55.4 3.9 0.00013 47.8 1.6 43 190-236 25-67 (447)
150 3ber_A Probable ATP-dependent 55.2 4.4 0.00015 42.8 1.9 26 209-236 72-97 (249)
151 1hqc_A RUVB; extended AAA-ATPa 55.2 4.6 0.00016 43.6 2.0 45 188-236 9-55 (324)
152 3a7p_A Autophagy protein 16; c 55.1 1.4E+02 0.0048 30.5 12.5 20 538-557 114-133 (152)
153 3llm_A ATP-dependent RNA helic 55.0 4.1 0.00014 42.6 1.6 26 209-236 68-93 (235)
154 3vfd_A Spastin; ATPase, microt 55.0 3.6 0.00012 46.4 1.3 51 186-236 110-165 (389)
155 3eie_A Vacuolar protein sortin 54.8 3.8 0.00013 45.0 1.4 50 187-236 14-68 (322)
156 2ke4_A CDC42-interacting prote 54.6 84 0.0029 29.7 10.3 74 48-123 9-90 (98)
157 3hhm_B NISH2 P85alpha; PI3KCA, 54.3 3E+02 0.01 31.6 18.4 27 482-508 141-167 (373)
158 3fe2_A Probable ATP-dependent 54.2 4.1 0.00014 42.5 1.4 24 211-236 60-83 (242)
159 3tnu_B Keratin, type II cytosk 54.1 1.6E+02 0.0056 28.6 14.3 17 489-505 37-53 (129)
160 1in4_A RUVB, holliday junction 54.1 4.7 0.00016 44.7 2.0 44 189-236 23-68 (334)
161 2eyu_A Twitching motility prot 54.0 4.5 0.00015 43.8 1.8 20 218-237 24-43 (261)
162 3q8t_A Beclin-1; autophagy, AT 53.8 1.4E+02 0.005 27.9 14.2 28 485-512 8-35 (96)
163 2w83_C C-JUN-amino-terminal ki 53.8 58 0.002 29.7 8.4 43 551-593 33-75 (77)
164 2eqb_B RAB guanine nucleotide 53.7 1.5E+02 0.0052 28.1 15.0 25 490-514 7-31 (97)
165 2k48_A Nucleoprotein; viral pr 53.2 84 0.0029 30.2 9.9 31 567-597 73-103 (107)
166 3ol1_A Vimentin; structural ge 52.9 1.7E+02 0.0057 28.3 15.3 27 564-590 78-104 (119)
167 1go4_E MAD1 (mitotic arrest de 52.9 45 0.0015 31.9 8.1 30 565-594 15-44 (100)
168 4fcw_A Chaperone protein CLPB; 52.6 5.5 0.00019 42.7 2.1 38 199-236 21-64 (311)
169 3u61_B DNA polymerase accessor 52.5 6 0.0002 43.0 2.4 41 189-236 24-65 (324)
170 3iv1_A Tumor susceptibility ge 52.3 1.4E+02 0.0048 27.3 11.0 44 547-590 31-74 (78)
171 3swk_A Vimentin; cytoskeleton, 52.0 1.1E+02 0.0038 28.2 10.4 36 554-589 48-83 (86)
172 2chq_A Replication factor C sm 52.0 3.6 0.00012 43.9 0.6 41 189-236 15-55 (319)
173 1sxj_D Activator 1 41 kDa subu 51.5 3.7 0.00013 44.7 0.6 27 210-236 49-75 (353)
174 2oap_1 GSPE-2, type II secreti 51.3 17 0.00059 43.2 6.3 21 215-237 258-278 (511)
175 2qp9_X Vacuolar protein sortin 51.1 4.8 0.00016 45.2 1.4 50 187-236 47-101 (355)
176 1gvn_B Zeta; postsegregational 51.1 9.5 0.00032 41.7 3.7 36 201-236 10-50 (287)
177 2j0s_A ATP-dependent RNA helic 51.0 5.3 0.00018 44.4 1.8 26 209-236 66-91 (410)
178 1q0u_A Bstdead; DEAD protein, 50.9 3.3 0.00011 42.4 0.1 25 210-236 34-58 (219)
179 3nmd_A CGMP dependent protein 50.9 56 0.0019 29.5 7.9 20 567-586 45-64 (72)
180 1l8d_A DNA double-strand break 50.5 1.5E+02 0.0053 27.6 11.6 24 570-593 79-102 (112)
181 3fmp_B ATP-dependent RNA helic 50.4 5.6 0.00019 45.7 1.9 27 210-236 122-148 (479)
182 2e7s_A RAB guanine nucleotide 50.0 66 0.0023 32.2 9.1 26 565-590 106-131 (135)
183 2efr_A General control protein 49.7 2.3E+02 0.0078 28.9 20.8 31 489-519 22-52 (155)
184 3n70_A Transport activator; si 49.6 6.6 0.00022 38.0 2.0 19 218-236 23-41 (145)
185 3bas_A Myosin heavy chain, str 49.4 1.6E+02 0.0055 27.1 11.7 20 487-506 13-32 (89)
186 1sxj_E Activator 1 40 kDa subu 48.8 5.1 0.00017 43.9 1.1 42 189-236 12-53 (354)
187 2ewv_A Twitching motility prot 48.5 5.8 0.0002 45.1 1.6 28 210-237 127-154 (372)
188 3l4q_C Phosphatidylinositol 3- 48.2 2.5E+02 0.0087 29.1 17.0 49 545-593 100-148 (170)
189 2fz4_A DNA repair protein RAD2 48.1 6.7 0.00023 41.4 1.9 25 211-237 102-126 (237)
190 3nmd_A CGMP dependent protein 48.1 43 0.0015 30.3 6.7 30 566-595 37-66 (72)
191 3fht_A ATP-dependent RNA helic 48.0 5.8 0.0002 43.8 1.5 28 209-236 54-81 (412)
192 1u0j_A DNA replication protein 47.8 7.4 0.00025 42.8 2.2 29 208-236 90-121 (267)
193 2z0m_A 337AA long hypothetical 47.8 6.5 0.00022 42.0 1.8 24 211-236 25-48 (337)
194 1m1j_C Fibrinogen gamma chain; 47.5 89 0.0031 36.4 11.2 48 549-596 85-132 (409)
195 3pey_A ATP-dependent RNA helic 47.3 5.9 0.0002 43.3 1.4 27 210-236 35-61 (395)
196 1jr3_A DNA polymerase III subu 47.3 8.7 0.0003 42.1 2.7 36 199-236 20-55 (373)
197 3s4r_A Vimentin; alpha-helix, 47.2 1.7E+02 0.0057 27.3 10.9 18 574-591 75-92 (93)
198 4fi5_A Nucleoprotein; structur 46.7 89 0.003 30.4 9.0 33 567-599 60-92 (113)
199 3s4r_A Vimentin; alpha-helix, 46.6 1.8E+02 0.0063 27.0 12.1 36 549-584 57-92 (93)
200 2ic6_A Nucleocapsid protein; h 46.4 1.1E+02 0.0037 28.1 9.1 31 567-597 43-73 (78)
201 3u1c_A Tropomyosin alpha-1 cha 46.4 1.9E+02 0.0066 27.2 16.2 24 495-518 23-46 (101)
202 2zan_A Vacuolar protein sortin 45.7 5.2 0.00018 46.4 0.6 51 186-236 129-184 (444)
203 2i4i_A ATP-dependent RNA helic 45.6 7.2 0.00025 43.3 1.8 25 210-236 45-69 (417)
204 2v66_B Nuclear distribution pr 45.5 2.2E+02 0.0076 27.6 17.3 24 488-511 3-26 (111)
205 1s2m_A Putative ATP-dependent 45.3 6 0.00021 43.7 1.1 26 209-236 50-75 (400)
206 3h1t_A Type I site-specific re 45.3 7.4 0.00025 46.2 1.9 27 210-237 190-216 (590)
207 1f5n_A Interferon-induced guan 45.2 2.7E+02 0.0094 33.8 15.4 22 215-236 34-55 (592)
208 2jlq_A Serine protease subunit 45.1 6.2 0.00021 45.7 1.1 26 210-236 11-36 (451)
209 4h22_A Leucine-rich repeat fli 44.8 1.4E+02 0.0048 28.7 10.0 58 55-116 22-79 (103)
210 2ce7_A Cell division protein F 44.1 10 0.00034 44.9 2.7 47 186-236 11-66 (476)
211 1ofh_A ATP-dependent HSL prote 44.1 5.8 0.0002 42.2 0.7 18 219-236 50-67 (310)
212 2b9c_A Striated-muscle alpha t 43.6 1.3E+02 0.0046 30.2 10.4 23 570-592 95-117 (147)
213 1wt6_A Myotonin-protein kinase 43.5 1.6E+02 0.0055 27.1 9.8 21 574-594 50-70 (81)
214 2ocy_A RAB guanine nucleotide 43.5 2.8E+02 0.0097 28.3 15.0 25 570-594 116-140 (154)
215 2x8a_A Nuclear valosin-contain 42.9 5 0.00017 43.5 -0.1 49 187-236 6-61 (274)
216 1ic2_A Tropomyosin alpha chain 42.9 1.9E+02 0.0064 26.0 10.5 24 570-593 49-72 (81)
217 2dhr_A FTSH; AAA+ protein, hex 42.9 8.7 0.0003 45.7 2.0 47 186-236 26-81 (499)
218 3oiy_A Reverse gyrase helicase 42.7 9 0.00031 42.9 2.0 25 210-236 29-53 (414)
219 3hu3_A Transitional endoplasmi 42.7 8.1 0.00028 45.7 1.7 20 217-236 236-255 (489)
220 4b4t_I 26S protease regulatory 42.7 32 0.0011 40.4 6.6 50 187-236 178-233 (437)
221 3efg_A Protein SLYX homolog; x 42.5 66 0.0023 29.2 7.2 48 547-594 13-60 (78)
222 3mq7_A Bone marrow stromal ant 42.4 2.6E+02 0.0087 27.4 15.0 35 556-590 72-106 (121)
223 1x79_B RAB GTPase binding effe 42.2 2.5E+02 0.0086 27.3 13.1 13 492-504 10-22 (112)
224 2ic9_A Nucleocapsid protein; h 42.2 1.2E+02 0.0042 28.7 9.1 32 567-598 43-74 (96)
225 4gkw_A Spindle assembly abnorm 41.9 2.8E+02 0.0095 27.7 22.6 16 644-659 142-157 (167)
226 1rif_A DAR protein, DNA helica 41.9 5.7 0.00019 42.5 0.1 23 213-237 124-146 (282)
227 2zqm_A Prefoldin beta subunit 41.7 2.2E+02 0.0075 26.5 14.0 30 567-596 82-111 (117)
228 1tue_A Replication protein E1; 41.4 6 0.00021 42.3 0.3 27 211-237 48-76 (212)
229 1xti_A Probable ATP-dependent 41.3 9.8 0.00034 41.7 2.0 26 209-236 37-62 (391)
230 3jsv_C NF-kappa-B essential mo 41.3 1.4E+02 0.005 28.1 9.4 11 489-499 24-34 (94)
231 3m50_P N.plumbaginifolia H+-tr 41.2 9.5 0.00033 29.2 1.2 17 881-897 14-30 (31)
232 2q6q_A Spindle POLE BODY compo 40.6 1.7E+02 0.0058 26.2 9.1 57 536-592 5-61 (74)
233 1fxk_A Prefoldin; archaeal pro 40.6 2.2E+02 0.0075 26.1 12.4 25 569-593 79-103 (107)
234 2db3_A ATP-dependent RNA helic 40.1 9.8 0.00034 43.5 1.8 26 209-236 85-110 (434)
235 3e70_C DPA, signal recognition 40.0 17 0.00059 40.7 3.7 19 218-236 128-146 (328)
236 1sxj_B Activator 1 37 kDa subu 39.7 9.5 0.00032 40.7 1.5 34 200-236 26-59 (323)
237 4fla_A Regulation of nuclear P 39.7 2.7E+02 0.0094 28.1 12.0 11 585-595 133-143 (152)
238 3i5x_A ATP-dependent RNA helic 39.5 12 0.0004 43.9 2.3 28 209-236 101-128 (563)
239 3fho_A ATP-dependent RNA helic 39.2 9.2 0.00031 44.8 1.4 27 210-236 149-175 (508)
240 1ojl_A Transcriptional regulat 38.9 11 0.00036 41.5 1.7 32 204-236 11-42 (304)
241 1qvr_A CLPB protein; coiled co 38.8 6.5 0.00022 49.3 0.0 42 189-237 168-209 (854)
242 4a2p_A RIG-I, retinoic acid in 37.9 12 0.0004 43.3 1.9 25 210-236 15-39 (556)
243 1n0w_A DNA repair protein RAD5 37.7 11 0.00039 38.5 1.6 28 209-236 11-41 (243)
244 1c4o_A DNA nucleotide excision 37.7 15 0.0005 45.0 2.9 45 188-237 2-46 (664)
245 3bas_A Myosin heavy chain, str 37.7 2.4E+02 0.0084 25.8 10.7 24 571-594 58-81 (89)
246 3pxi_A Negative regulator of g 37.6 14 0.00048 45.6 2.7 38 199-236 495-538 (758)
247 3hws_A ATP-dependent CLP prote 37.5 8.1 0.00028 43.0 0.5 18 219-236 51-68 (363)
248 4b3f_X DNA-binding protein smu 37.3 10 0.00034 46.0 1.3 26 210-236 197-222 (646)
249 2w0m_A SSO2452; RECA, SSPF, un 36.9 13 0.00045 37.4 2.0 16 221-236 25-40 (235)
250 1gmj_A ATPase inhibitor; coile 36.8 1.2E+02 0.0041 28.2 7.9 41 547-590 39-79 (84)
251 3ghg_C Fibrinogen gamma chain; 36.1 2.7E+02 0.0091 32.6 12.7 44 546-589 89-132 (411)
252 2v1x_A ATP-dependent DNA helic 36.1 15 0.00051 44.4 2.5 26 209-236 51-76 (591)
253 3u59_A Tropomyosin beta chain; 36.0 2.7E+02 0.0094 25.9 15.5 26 492-517 20-45 (101)
254 1um8_A ATP-dependent CLP prote 35.9 6 0.0002 44.3 -0.9 18 219-236 72-89 (376)
255 3tbk_A RIG-I helicase domain; 35.7 13 0.00045 42.6 1.9 24 211-236 13-36 (555)
256 2r44_A Uncharacterized protein 35.7 8.2 0.00028 42.1 0.2 16 221-236 48-63 (331)
257 4gp7_A Metallophosphoesterase; 35.7 10 0.00035 37.7 0.9 18 220-237 10-27 (171)
258 3upu_A ATP-dependent DNA helic 35.6 12 0.00041 43.3 1.6 36 197-236 27-62 (459)
259 1fuu_A Yeast initiation factor 35.6 7.2 0.00025 42.7 -0.3 25 210-236 51-75 (394)
260 3b9q_A Chloroplast SRP recepto 35.4 18 0.00062 39.9 2.9 18 219-236 100-117 (302)
261 1ypw_A Transitional endoplasmi 35.2 21 0.00071 44.8 3.7 51 186-236 199-255 (806)
262 1r6b_X CLPA protein; AAA+, N-t 34.9 18 0.0006 44.5 3.0 37 200-236 463-505 (758)
263 3b85_A Phosphate starvation-in 34.9 13 0.00046 38.7 1.7 24 211-236 16-39 (208)
264 3lw7_A Adenylate kinase relate 34.4 12 0.00042 35.7 1.2 16 221-236 3-18 (179)
265 2fwr_A DNA repair protein RAD2 34.3 15 0.0005 42.1 2.0 25 210-236 101-125 (472)
266 3iox_A AGI/II, PA; alpha helix 34.1 6.8E+02 0.023 29.9 17.0 26 481-506 9-34 (497)
267 3iv1_A Tumor susceptibility ge 34.1 2E+02 0.0069 26.3 8.9 49 546-594 16-64 (78)
268 2p5t_B PEZT; postsegregational 34.0 23 0.00079 37.5 3.3 17 220-236 33-49 (253)
269 2efr_A General control protein 33.7 4E+02 0.014 27.2 20.6 18 492-509 39-56 (155)
270 1qvr_A CLPB protein; coiled co 33.7 17 0.00057 45.7 2.5 43 190-236 557-605 (854)
271 3pxg_A Negative regulator of g 33.6 17 0.00059 42.3 2.5 42 189-237 178-219 (468)
272 1sxj_A Activator 1 95 kDa subu 33.5 9.5 0.00032 45.0 0.3 17 220-236 78-94 (516)
273 2cvh_A DNA repair and recombin 33.1 15 0.00051 37.0 1.6 28 209-236 7-37 (220)
274 4emc_A Monopolin complex subun 32.2 2E+02 0.0067 30.3 9.7 27 479-505 11-37 (190)
275 4a74_A DNA repair and recombin 32.2 18 0.00062 36.6 2.1 28 209-236 12-42 (231)
276 3tr0_A Guanylate kinase, GMP k 31.8 13 0.00044 37.2 0.9 16 221-236 9-24 (205)
277 2px0_A Flagellar biosynthesis 31.7 17 0.00059 40.0 1.9 17 221-237 107-123 (296)
278 2yhs_A FTSY, cell division pro 31.7 20 0.00068 42.9 2.6 17 220-236 294-310 (503)
279 3c8u_A Fructokinase; YP_612366 31.5 23 0.00079 36.1 2.7 20 217-236 20-39 (208)
280 1rz3_A Hypothetical protein rb 31.4 23 0.00077 36.1 2.6 20 217-236 20-39 (201)
281 3dm5_A SRP54, signal recogniti 31.3 24 0.00083 41.4 3.2 21 217-237 98-118 (443)
282 3sqw_A ATP-dependent RNA helic 31.0 20 0.00067 42.6 2.4 28 209-236 50-77 (579)
283 4gl2_A Interferon-induced heli 31.0 16 0.00055 43.9 1.7 25 210-236 15-39 (699)
284 2gza_A Type IV secretion syste 30.9 14 0.00048 41.7 1.1 20 215-236 173-192 (361)
285 3qh9_A Liprin-beta-2; coiled-c 30.9 2.8E+02 0.0095 25.6 9.2 20 488-507 19-38 (81)
286 3tau_A Guanylate kinase, GMP k 30.9 15 0.0005 37.7 1.1 17 220-236 9-25 (208)
287 1w36_D RECD, exodeoxyribonucle 30.8 12 0.00043 45.1 0.7 18 220-237 165-182 (608)
288 1hv8_A Putative ATP-dependent 30.7 14 0.00047 39.9 0.9 25 211-236 37-61 (367)
289 1deb_A APC protein, adenomatou 30.5 2.3E+02 0.0077 24.0 7.8 34 485-518 7-40 (54)
290 4ag6_A VIRB4 ATPase, type IV s 30.4 12 0.0004 42.2 0.3 19 216-236 34-52 (392)
291 4etp_A Kinesin-like protein KA 29.9 1.3E+02 0.0044 34.8 8.9 49 541-589 10-58 (403)
292 2oqq_A Transcription factor HY 29.7 1.5E+02 0.0051 24.2 6.4 19 571-589 19-37 (42)
293 1x8y_A Lamin A/C; structural p 29.7 3.1E+02 0.01 25.1 9.6 14 573-586 67-80 (86)
294 1ci6_A Transcription factor AT 29.5 1.8E+02 0.0061 25.2 7.6 29 551-579 26-54 (63)
295 1t6f_A Geminin; coiled-coil, c 29.3 66 0.0023 25.4 4.1 27 630-656 9-35 (37)
296 2og2_A Putative signal recogni 29.2 27 0.00092 39.8 3.0 18 219-236 157-174 (359)
297 2l5g_B Putative uncharacterize 29.2 1E+02 0.0034 25.2 5.3 31 560-590 7-37 (42)
298 1kgd_A CASK, peripheral plasma 29.2 15 0.00053 36.6 0.9 16 221-236 7-22 (180)
299 2qag_C Septin-7; cell cycle, c 29.2 17 0.00059 42.2 1.5 23 214-236 26-48 (418)
300 1wt6_A Myotonin-protein kinase 29.1 3.5E+02 0.012 25.0 9.7 39 551-589 34-72 (81)
301 1ly1_A Polynucleotide kinase; 28.9 17 0.00059 35.3 1.2 17 220-236 3-19 (181)
302 1yks_A Genome polyprotein [con 28.9 19 0.00066 41.5 1.8 21 214-236 5-25 (440)
303 3kl4_A SRP54, signal recogniti 28.9 26 0.00088 41.0 2.8 19 219-237 97-115 (433)
304 3s9g_A Protein hexim1; cyclin 28.8 3.2E+02 0.011 26.1 9.5 20 570-589 66-85 (104)
305 3cvf_A Homer-3, homer protein 28.7 2.6E+02 0.0091 25.6 8.8 33 58-90 8-40 (79)
306 1lwu_C Fibrinogen gamma chain; 28.3 1.2E+02 0.0042 34.3 8.0 42 550-591 14-55 (323)
307 1zp6_A Hypothetical protein AT 28.2 16 0.00053 36.2 0.8 17 220-236 10-26 (191)
308 1e9r_A Conjugal transfer prote 28.1 14 0.00049 42.0 0.5 18 219-236 53-70 (437)
309 2dr3_A UPF0273 protein PH0284; 28.0 18 0.00063 36.9 1.3 17 220-236 24-40 (247)
310 2ykg_A Probable ATP-dependent 27.9 23 0.00077 42.6 2.2 24 211-236 22-45 (696)
311 3trf_A Shikimate kinase, SK; a 27.7 18 0.00063 35.6 1.2 16 221-236 7-22 (185)
312 3efg_A Protein SLYX homolog; x 27.0 1.9E+02 0.0063 26.3 7.5 47 552-598 11-57 (78)
313 1rj9_A FTSY, signal recognitio 26.7 18 0.00062 40.0 1.0 16 221-236 104-119 (304)
314 1wp9_A ATP-dependent RNA helic 26.6 20 0.00069 39.6 1.4 24 211-237 18-41 (494)
315 1gd2_E Transcription factor PA 26.6 1.2E+02 0.004 27.2 5.9 37 549-592 30-66 (70)
316 1qhx_A CPT, protein (chloramph 26.5 20 0.00069 35.0 1.2 17 220-236 4-20 (178)
317 3a00_A Guanylate kinase, GMP k 26.4 16 0.00056 36.6 0.5 15 222-236 4-18 (186)
318 1ik9_A DNA repair protein XRCC 26.2 6.1E+02 0.021 26.9 14.8 10 447-456 124-133 (213)
319 1y1u_A Signal transducer and a 26.1 7.1E+02 0.024 30.3 14.5 14 787-800 204-217 (585)
320 1t2k_D Cyclic-AMP-dependent tr 26.1 2E+02 0.0068 24.5 7.2 13 577-589 44-56 (61)
321 2j41_A Guanylate kinase; GMP, 26.1 19 0.00064 36.0 0.9 16 221-236 8-23 (207)
322 3qh9_A Liprin-beta-2; coiled-c 26.1 3.9E+02 0.013 24.6 9.6 11 574-584 66-76 (81)
323 2qnr_A Septin-2, protein NEDD5 26.1 18 0.00062 39.7 0.9 23 214-236 13-35 (301)
324 2e7s_A RAB guanine nucleotide 26.0 1E+02 0.0035 30.8 6.1 8 511-518 69-76 (135)
325 1lvg_A Guanylate kinase, GMP k 25.8 17 0.00057 37.1 0.5 16 221-236 6-21 (198)
326 1gmj_A ATPase inhibitor; coile 25.7 3.6E+02 0.012 25.0 9.1 29 567-595 49-77 (84)
327 3lfu_A DNA helicase II; SF1 he 25.7 20 0.00067 42.8 1.1 19 219-237 22-40 (647)
328 2ehv_A Hypothetical protein PH 25.6 19 0.00066 36.9 0.9 17 221-237 32-48 (251)
329 1oyw_A RECQ helicase, ATP-depe 25.4 15 0.00052 43.4 0.1 26 209-236 32-57 (523)
330 1r6b_X CLPA protein; AAA+, N-t 25.4 22 0.00076 43.7 1.5 28 210-237 198-225 (758)
331 1ye8_A Protein THEP1, hypothet 25.2 20 0.00068 36.4 0.9 15 222-236 3-17 (178)
332 4a4z_A Antiviral helicase SKI2 25.2 26 0.0009 45.0 2.2 73 1062-1150 918-991 (997)
333 3u06_A Protein claret segregat 25.2 1.5E+02 0.0052 34.4 8.4 46 544-589 13-58 (412)
334 3sop_A Neuronal-specific septi 25.1 21 0.00073 38.7 1.1 18 219-236 2-19 (270)
335 1wle_A Seryl-tRNA synthetase; 25.0 4.6E+02 0.016 31.2 12.6 20 922-942 429-451 (501)
336 2orw_A Thymidine kinase; TMTK, 25.0 17 0.0006 36.9 0.4 17 221-237 5-21 (184)
337 2b8t_A Thymidine kinase; deoxy 24.9 19 0.00066 38.3 0.8 19 220-238 13-31 (223)
338 2r8r_A Sensor protein; KDPD, P 24.9 19 0.00064 38.8 0.7 19 219-237 6-24 (228)
339 2bdt_A BH3686; alpha-beta prot 24.8 21 0.0007 35.5 0.9 16 221-236 4-19 (189)
340 3iij_A Coilin-interacting nucl 24.8 20 0.00067 35.4 0.8 16 221-236 13-28 (180)
341 2d7d_A Uvrabc system protein B 24.7 33 0.0011 41.9 2.9 49 186-238 3-51 (661)
342 2gk6_A Regulator of nonsense t 24.5 23 0.00079 42.8 1.4 26 210-237 188-213 (624)
343 3i00_A HIP-I, huntingtin-inter 24.5 3E+02 0.01 26.9 8.9 22 483-504 17-38 (120)
344 1l8d_A DNA double-strand break 24.5 4.3E+02 0.015 24.5 12.3 25 562-586 78-102 (112)
345 3lnc_A Guanylate kinase, GMP k 24.5 23 0.00079 36.6 1.3 16 221-236 29-44 (231)
346 1znw_A Guanylate kinase, GMP k 24.2 21 0.00073 36.3 0.9 21 214-236 17-37 (207)
347 1uf9_A TT1252 protein; P-loop, 24.0 27 0.00091 34.7 1.6 22 215-236 4-25 (203)
348 1moz_A ARL1, ADP-ribosylation 23.9 33 0.0011 33.1 2.2 28 209-236 7-35 (183)
349 2oca_A DAR protein, ATP-depend 23.9 18 0.00061 41.8 0.3 35 194-237 112-146 (510)
350 2xdj_A Uncharacterized protein 23.6 4.3E+02 0.015 24.2 9.7 22 568-589 33-54 (83)
351 2i1j_A Moesin; FERM, coiled-co 23.6 68 0.0023 38.8 5.2 34 186-219 76-115 (575)
352 4a2q_A RIG-I, retinoic acid in 23.5 28 0.00095 43.1 1.9 25 210-236 256-280 (797)
353 3ghg_B Fibrinogen beta chain; 23.5 9.5E+02 0.033 28.5 14.4 22 571-592 165-186 (461)
354 3htk_A Structural maintenance 23.5 3.2E+02 0.011 22.8 8.7 30 562-591 26-55 (60)
355 3m91_A Proteasome-associated A 23.4 2.7E+02 0.0092 23.5 7.2 35 553-587 14-48 (51)
356 2oqq_A Transcription factor HY 23.3 2.3E+02 0.0078 23.2 6.4 34 552-585 7-40 (42)
357 1ik9_A DNA repair protein XRCC 23.3 5E+02 0.017 27.6 11.2 29 62-90 131-159 (213)
358 2zj8_A DNA helicase, putative 23.3 23 0.00077 43.3 1.0 21 214-236 36-56 (720)
359 3iyk_A VP5; icosahedral virus; 23.2 1E+03 0.035 28.5 16.3 51 981-1053 465-515 (526)
360 2avr_X Adhesion A; antiparalle 23.1 5.4E+02 0.019 25.2 12.8 12 574-585 87-98 (119)
361 3uie_A Adenylyl-sulfate kinase 23.1 28 0.00096 35.2 1.5 19 218-236 24-42 (200)
362 3pxi_A Negative regulator of g 22.9 34 0.0012 42.2 2.5 42 189-237 178-219 (758)
363 3vaa_A Shikimate kinase, SK; s 22.9 25 0.00087 35.5 1.2 16 221-236 27-42 (199)
364 4b4t_H 26S protease regulatory 22.9 21 0.00073 42.2 0.7 50 187-236 205-260 (467)
365 3okq_A BUD site selection prot 22.8 6E+02 0.02 25.6 16.9 68 485-552 25-97 (141)
366 2pt7_A CAG-ALFA; ATPase, prote 22.6 20 0.00068 40.1 0.3 19 216-236 170-188 (330)
367 4a2w_A RIG-I, retinoic acid in 22.5 27 0.00094 44.3 1.6 31 920-951 897-928 (936)
368 2v6i_A RNA helicase; membrane, 22.5 30 0.001 39.7 1.8 16 221-236 4-19 (431)
369 1j8m_F SRP54, signal recogniti 22.3 56 0.0019 36.0 3.8 17 220-236 99-115 (297)
370 1hjb_A Ccaat/enhancer binding 22.3 4.1E+02 0.014 24.6 9.0 12 578-589 52-63 (87)
371 3kb2_A SPBC2 prophage-derived 22.2 28 0.00095 33.5 1.2 16 221-236 3-18 (173)
372 1kht_A Adenylate kinase; phosp 22.2 27 0.00093 34.2 1.2 16 221-236 5-20 (192)
373 1lkx_A Myosin IE heavy chain; 22.1 32 0.0011 42.7 2.0 21 216-236 91-111 (697)
374 1gm5_A RECG; helicase, replica 22.1 24 0.00083 44.1 1.0 39 195-236 368-406 (780)
375 2ze6_A Isopentenyl transferase 21.7 28 0.00094 37.1 1.2 15 221-235 3-17 (253)
376 3lay_A Zinc resistance-associa 21.6 3.7E+02 0.013 27.8 9.5 57 540-596 70-133 (175)
377 4ad8_A DNA repair protein RECN 21.6 1E+03 0.034 27.7 16.3 15 223-237 64-78 (517)
378 1t6f_A Geminin; coiled-coil, c 21.4 1.9E+02 0.0064 22.9 5.3 28 562-589 7-34 (37)
379 3kta_A Chromosome segregation 21.4 25 0.00087 34.6 0.8 16 221-236 28-43 (182)
380 1z6g_A Guanylate kinase; struc 21.3 23 0.00079 36.7 0.5 15 222-236 26-40 (218)
381 1fxk_C Protein (prefoldin); ar 21.1 5.5E+02 0.019 24.5 12.4 19 543-561 90-108 (133)
382 2wt7_A Proto-oncogene protein 21.1 3.2E+02 0.011 23.5 7.6 9 552-560 27-35 (63)
383 1kag_A SKI, shikimate kinase I 21.0 26 0.00088 34.0 0.7 16 221-236 6-21 (173)
384 1w9i_A Myosin II heavy chain; 21.0 35 0.0012 42.8 2.0 21 216-236 169-189 (770)
385 2i3b_A HCR-ntpase, human cance 21.0 24 0.00081 36.3 0.5 16 221-236 3-18 (189)
386 2lw1_A ABC transporter ATP-bin 20.9 4.3E+02 0.015 24.0 8.9 27 479-505 20-46 (89)
387 4emc_A Monopolin complex subun 20.8 3.4E+02 0.012 28.6 9.0 61 529-589 22-82 (190)
388 1knq_A Gluconate kinase; ALFA/ 20.7 28 0.00095 34.0 0.9 17 220-236 9-25 (175)
389 1tev_A UMP-CMP kinase; ploop, 20.7 30 0.001 33.8 1.2 17 220-236 4-20 (196)
390 2v26_A Myosin VI; calmodulin-b 20.7 35 0.0012 42.9 2.0 21 216-236 137-157 (784)
391 1jcd_A Major outer membrane li 20.7 3.8E+02 0.013 22.8 7.6 31 57-87 5-35 (52)
392 2z83_A Helicase/nucleoside tri 20.7 32 0.0011 39.8 1.6 15 222-236 24-38 (459)
393 2dq0_A Seryl-tRNA synthetase; 20.6 3E+02 0.01 32.3 9.7 30 567-596 74-103 (455)
394 1gku_B Reverse gyrase, TOP-RG; 20.5 35 0.0012 44.0 2.0 23 210-234 64-86 (1054)
395 1xx6_A Thymidine kinase; NESG, 20.5 23 0.0008 36.6 0.3 18 221-238 10-27 (191)
396 2va8_A SSO2462, SKI2-type heli 20.3 37 0.0012 41.3 2.0 21 214-236 43-63 (715)
397 1t2k_D Cyclic-AMP-dependent tr 20.3 3E+02 0.01 23.3 7.2 30 553-582 27-56 (61)
398 2rhm_A Putative kinase; P-loop 20.2 30 0.001 34.0 1.1 17 220-236 6-22 (193)
399 2whx_A Serine protease/ntpase/ 20.1 38 0.0013 41.1 2.1 24 211-236 180-203 (618)
400 1kk8_A Myosin heavy chain, str 20.1 36 0.0012 43.1 1.9 21 216-236 166-186 (837)
401 3cvf_A Homer-3, homer protein 20.0 5.1E+02 0.017 23.7 10.2 27 568-594 47-73 (79)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-85 Score=752.63 Aligned_cols=342 Identities=35% Similarity=0.525 Sum_probs=284.6
Q ss_pred HHHHHHhcChhHHHHhhhhhhcccCCCCEEEEEeeCCCCCC-CC--CceEee--cCC----cEEEEecCCCccCCCCcee
Q 001007 118 ALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFED-EG--PSVVEF--TDD----CTIRVNTGDDTISNPKKDF 188 (1191)
Q Consensus 118 ~~e~e~r~~~~~~eRrkLhN~l~elkGnIRV~~RVRPl~~~-E~--~svV~~--~d~----~tI~v~~~~~~~~~~~k~F 188 (1191)
+.+.++++..+..+||+|||+++|++|||||||||||+++. |. ..++.+ .++ ..+.+..... ....+.|
T Consensus 33 ~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~F 110 (403)
T 4etp_A 33 MKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEF 110 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS--SCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC--CcCceEE
Confidence 33444455566788999999999999999999999999866 32 122222 221 2344433221 1234789
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFN 268 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~ 268 (1191)
+||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+.......+.|.
T Consensus 111 ~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~ 188 (403)
T 4etp_A 111 KFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYK 188 (403)
T ss_dssp EESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEE
Confidence 999999999999999999999999999999999999999999999999996 469999999999999876556678999
Q ss_pred eeEEEEEEechhhhcccCCCCCC--------ceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC---
Q 001007 269 FAVTVFELYNEQLRELLPQTGNG--------LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK--- 334 (1191)
Q Consensus 269 V~VS~lEIYNE~V~DLL~~~~~~--------~~~i~~~~---~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~--- 334 (1191)
|+|||+|||||+|+|||.+.... ...++.+. ...+.+++++.|.+++++..+|..|.++|.++.|.
T Consensus 189 v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~ 268 (403)
T 4etp_A 189 VNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNE 268 (403)
T ss_dssp EEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHH
T ss_pred EEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCc
Confidence 99999999999999999876421 12233322 23567899999999999999999999999999885
Q ss_pred -CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCC---ccc
Q 001007 335 -FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD---IVP 410 (1191)
Q Consensus 335 -SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~---hVP 410 (1191)
|||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+.. |||
T Consensus 269 ~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiP 348 (403)
T 4etp_A 269 HSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIP 348 (403)
T ss_dssp HHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCC
T ss_pred ccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCC
Confidence 8999999999999998888888899999999999999999999999999999999999999999999987554 999
Q ss_pred CCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001007 411 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 411 YRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~ 463 (1191)
|||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|.+++
T Consensus 349 yRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp GGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred cccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999987653
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=6e-85 Score=751.80 Aligned_cols=336 Identities=33% Similarity=0.519 Sum_probs=283.3
Q ss_pred hcChhHHHHhhhhhhcccCCCCEEEEEeeCCCCCCCCC---ceEeecCCcEEEEecCCCcc--CCCCceeecceeeCCCC
Q 001007 124 RISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGP---SVVEFTDDCTIRVNTGDDTI--SNPKKDFEFDRVYGPHV 198 (1191)
Q Consensus 124 r~~~~~~eRrkLhN~l~elkGnIRV~~RVRPl~~~E~~---svV~~~d~~tI~v~~~~~~~--~~~~k~F~FD~VF~p~a 198 (1191)
++..+..+||+|||++++++|||||||||||+++.|.. .++.++++.++.+....... ....+.|+||+||++++
T Consensus 39 ~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~ 118 (412)
T 3u06_A 39 QLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCC
Confidence 34456688999999999999999999999999877632 34566778888776543321 12257899999999999
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEec
Q 001007 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYN 278 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYN 278 (1191)
+|++||+.|.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.......+.|.|+|||+||||
T Consensus 119 ~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYn 198 (412)
T 3u06_A 119 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYN 198 (412)
T ss_dssp CHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999998765566789999999999999
Q ss_pred hhhhcccCCCCCCceEEEe--c--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEee
Q 001007 279 EQLRELLPQTGNGLAKIRL--Q--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNN 350 (1191)
Q Consensus 279 E~V~DLL~~~~~~~~~i~~--~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n 350 (1191)
|+|+|||.+..... .++. + ....+.+++++.|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.+
T Consensus 199 E~i~DLL~~~~~~~-~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~ 277 (412)
T 3u06_A 199 EVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRH 277 (412)
T ss_dssp TEEEETTCCSCCCC-CEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEE
T ss_pred CeeEEcCCCCCCCc-eeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEe
Confidence 99999998765432 2332 1 234567899999999999999999999999999886 8999999999999988
Q ss_pred ccCCceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcce
Q 001007 351 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1191)
Q Consensus 351 ~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKT 430 (1191)
...+....|+|+|||||||||.. .|.|++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|
T Consensus 278 ~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt 353 (412)
T 3u06_A 278 AEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKT 353 (412)
T ss_dssp TTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEE
T ss_pred CCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceE
Confidence 87788889999999999999974 47899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001007 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 431 lMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
+||+||||+..+++||++||+||+|+++|++...
T Consensus 354 ~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~ 387 (412)
T 3u06_A 354 LMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 387 (412)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHHHHCC---
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999986543
No 3
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.5e-82 Score=721.50 Aligned_cols=327 Identities=38% Similarity=0.542 Sum_probs=250.9
Q ss_pred hhhhhhcccCCCCEEEEEeeCCCCCCCCCc---eEee--------cCCcEEEEecCCCc--------cCCCCceeeccee
Q 001007 133 KRLFNDLLTAKGNIKVFCRTRPLFEDEGPS---VVEF--------TDDCTIRVNTGDDT--------ISNPKKDFEFDRV 193 (1191)
Q Consensus 133 rkLhN~l~elkGnIRV~~RVRPl~~~E~~s---vV~~--------~d~~tI~v~~~~~~--------~~~~~k~F~FD~V 193 (1191)
.+|||++++++|||||||||||+++.|... ++.+ .++++|.+..++.. .....+.|+||+|
T Consensus 11 ~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~V 90 (376)
T 2rep_A 11 SSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRV 90 (376)
T ss_dssp ------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEE
T ss_pred ccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEE
Confidence 579999999999999999999999887432 2333 24556666543211 1123478999999
Q ss_pred eCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCC----CCChHHHHHHHHHHhhccCcccccccce
Q 001007 194 YGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH----DRGLYARCFEELFDLSNSDTTATARFNF 269 (1191)
Q Consensus 194 F~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~----~~GIIPRale~LF~~i~~~~~~~~~f~V 269 (1191)
|+++++|++||+.|.|+|+++|+|||+||||||||||||||||+|++. ++|||||++++||+.++.....++.|.|
T Consensus 91 f~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v 170 (376)
T 2rep_A 91 FPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSF 170 (376)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEE
T ss_pred cCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999999999999999753 6899999999999988765566789999
Q ss_pred eEEEEEEechhhhcccCCCCC----CceEEEec----ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----Cce
Q 001007 270 AVTVFELYNEQLRELLPQTGN----GLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNV 337 (1191)
Q Consensus 270 ~VS~lEIYNE~V~DLL~~~~~----~~~~i~~~----~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSR 337 (1191)
+|||+|||||+|+|||.+... ....++.. ....+.+++++.|.+++++..+|..|.++|.++.|. |||
T Consensus 171 ~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 250 (376)
T 2rep_A 171 VASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSR 250 (376)
T ss_dssp EEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGG
T ss_pred EEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCC
Confidence 999999999999999987521 22334433 233567899999999999999999999999988874 899
Q ss_pred eEEEEEEEEEEeeccCCceeeeeeeEEecCCCccccccCCcc----hhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCC
Q 001007 338 SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSG----ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYEN 413 (1191)
Q Consensus 338 SH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G----~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRd 413 (1191)
||+||+|+|.+.+...+....|+|+|||||||||+.++++.| +|++|+.+||+||++||+||.+|++++.||||||
T Consensus 251 SH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRd 330 (376)
T 2rep_A 251 SHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRN 330 (376)
T ss_dssp SEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGG
T ss_pred ceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcC
Confidence 999999999998877777788999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhc
Q 001007 414 SMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 459 (1191)
Q Consensus 414 SKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I 459 (1191)
||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|
T Consensus 331 SkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 331 SKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp SHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999864
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.1e-81 Score=715.92 Aligned_cols=342 Identities=36% Similarity=0.525 Sum_probs=292.3
Q ss_pred ccCCCCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhc
Q 001007 140 LTAKGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSAL 215 (1191)
Q Consensus 140 ~elkGnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~svL 215 (1191)
+|++|||||||||||+++.|. ..++...+..++...... ...+.|.||+||+++++|++||+.+.|+|++++
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l 76 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD----DKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAV 76 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTT----SCEEEEECSEEECTTCCHHHHHHTTTHHHHHHH
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCC----CCceEEecCEEECCCCCcceehhhhhhhhHhhh
Confidence 479999999999999987551 123333444455443221 234899999999999999999999999999999
Q ss_pred CCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC--Cce
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN--GLA 293 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~--~~~ 293 (1191)
+|||+||||||||||||||||+|++.++|||||++++||+.+.... ..+.|.|+|||+|||||+|+|||.+... ...
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l 155 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTT-TTEEEEEEEEEEEECSSCEEESSCCSSSCCCCC
T ss_pred cCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhc-cCceeEEEEEEEEEeCceeeecCCCcccCCcce
Confidence 9999999999999999999999999999999999999999887543 3478999999999999999999987543 234
Q ss_pred EEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecC
Q 001007 294 KIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 367 (1191)
Q Consensus 294 ~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLA 367 (1191)
.++.+. ...+.+++++.|.++++++.+|..|..+|+++.|. |||||+||+|+|.+.+..++....|+|+|||||
T Consensus 156 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 235 (369)
T 3cob_A 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235 (369)
T ss_dssp EEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECC
T ss_pred EEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCC
Confidence 454443 34577899999999999999999999999999885 899999999999998887778889999999999
Q ss_pred CCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHH
Q 001007 368 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1191)
Q Consensus 368 GSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETL 447 (1191)
||||..++++.|.|++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+++||+
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhcccccCcchhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 448 SSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 448 sTLrFAsRAr~I~~~~~n~~tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
+||+||+||++|++.+..+... ++|.+|++++..++++.
T Consensus 316 ~TLrfA~rak~i~~~~~~n~~~------------------~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKNVSS------------------KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCCEEC------------------HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHhhcccCCcccCCH------------------HHHHHHHHHHHHHHHhc
Confidence 9999999999998766543221 46677777776666554
No 5
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-80 Score=697.46 Aligned_cols=314 Identities=39% Similarity=0.594 Sum_probs=268.6
Q ss_pred cCCCCEEEEEeeCCCCCCCCC-----ceEee--cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhh
Q 001007 141 TAKGNIKVFCRTRPLFEDEGP-----SVVEF--TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQS 213 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E~~-----svV~~--~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~s 213 (1191)
+++|||||||||||+++.|.. .++.+ .++..+.+... ...+.|+||+||+++++|++||+.|.|+|++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~ 75 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQEVQALVTS 75 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTTTHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHHHHHHHHH
Confidence 478999999999999876632 23444 23344444332 2347899999999999999999999999999
Q ss_pred hcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCce
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 293 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~~ 293 (1191)
+++|||+||||||||||||||||+|+++++|||||++++||+.++.. ...+.|.|+|||+|||||+|+|||.+.+....
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 154 (330)
T 2h58_A 76 CIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEK-ASDWEYTITVSAAEIYNEVLRDLLGKEPQEKL 154 (330)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSCSSCCCC
T ss_pred HhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcc-cCCceEEEEEEEEEEECCChhhcccccccccc
Confidence 99999999999999999999999999999999999999999998743 45678999999999999999999987654433
Q ss_pred EEEe--c--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEe
Q 001007 294 KIRL--Q--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVD 365 (1191)
Q Consensus 294 ~i~~--~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVD 365 (1191)
.++. + ....+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+...+....|+|+|||
T Consensus 155 ~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 234 (330)
T 2h58_A 155 EIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVD 234 (330)
T ss_dssp CCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred eEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEe
Confidence 4443 2 233567899999999999999999999999998875 8999999999999988777778899999999
Q ss_pred cCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHH
Q 001007 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 445 (1191)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eE 445 (1191)
||||||..++++.|.|++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+++|
T Consensus 235 LAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~E 314 (330)
T 2h58_A 235 LAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSE 314 (330)
T ss_dssp CCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhcc
Q 001007 446 TLSSLNFSSRARSTV 460 (1191)
Q Consensus 446 TLsTLrFAsRAr~I~ 460 (1191)
|++||+||+||++|+
T Consensus 315 Tl~TL~fA~rak~i~ 329 (330)
T 2h58_A 315 TLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999999999875
No 6
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1e-80 Score=703.94 Aligned_cols=319 Identities=35% Similarity=0.551 Sum_probs=258.1
Q ss_pred ccCCCCEEEEEeeCCCCCCCCCc----eEeecC----CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhH
Q 001007 140 LTAKGNIKVFCRTRPLFEDEGPS----VVEFTD----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFV 211 (1191)
Q Consensus 140 ~elkGnIRV~~RVRPl~~~E~~s----vV~~~d----~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV 211 (1191)
+++||||||||||||+++.|... ++...+ ...+.+..+.. ....+.|+||+||+++++|++||++|.|+|
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv 78 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG--RILSYNFQFDMIFEPSHTNKEIFEEIRQLV 78 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC--cccceeeecCEEECCCccHHHHHHHHHHHH
Confidence 47899999999999999877432 233222 22455544322 123478999999999999999999999999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC-
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN- 290 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~- 290 (1191)
+++++|||+||||||||||||||||+|+ ++|||||++++||+.+......++.|.|.|||+|||||+|+|||.+...
T Consensus 79 ~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (349)
T 3t0q_A 79 QSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSH 156 (349)
T ss_dssp HGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccc
Confidence 9999999999999999999999999996 4699999999999988766666789999999999999999999986531
Q ss_pred ---------CceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCC
Q 001007 291 ---------GLAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG 354 (1191)
Q Consensus 291 ---------~~~~i~~~~---~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg 354 (1191)
....++.+. ...+.+++++.|.+++++..+|..|.++|.++.|+ |||||+||+|+|.+.+..++
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 236 (349)
T 3t0q_A 157 DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG 236 (349)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTC
T ss_pred cccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCC
Confidence 122233222 24577899999999999999999999999998874 89999999999999988888
Q ss_pred ceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCcceE
Q 001007 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk---~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
....|+|+|||||||||+.+++++|+|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+
T Consensus 237 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~ 316 (349)
T 3t0q_A 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTL 316 (349)
T ss_dssp CEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEE
T ss_pred CeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 8889999999999999999999999999999999999999999999998765 4999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHhhcccc
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRARSTVLS 462 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr~I~~~ 462 (1191)
||+||||+..+++||++||+||+|+++|++.
T Consensus 317 mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 317 MFVNIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999999998754
No 7
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.4e-80 Score=700.09 Aligned_cols=322 Identities=29% Similarity=0.446 Sum_probs=247.6
Q ss_pred hhhhcccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCcc----------------CCCCceeecceee
Q 001007 135 LFNDLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI----------------SNPKKDFEFDRVY 194 (1191)
Q Consensus 135 LhN~l~elkGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~----------------~~~~k~F~FD~VF 194 (1191)
+++...+++|||||+|||||+++.| ...+|.+.++..+.+.+..... ....+.|.||+||
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf 80 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF 80 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEE
Confidence 4677889999999999999998765 2456777777766654432110 1234689999999
Q ss_pred CCCCChhhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEE
Q 001007 195 GPHVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV 273 (1191)
Q Consensus 195 ~p~asQeeVFeeV-~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~ 273 (1191)
+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.... ....|.|.|||
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~-~~~~~~v~vS~ 159 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIK-EEKICSTAVSY 159 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTT-TTEEEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhc-cCceEEEEEEE
Confidence 9999999999986 899999999999999999999999999999999999999999999999887533 35689999999
Q ss_pred EEEechhhhcccCCCCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEE
Q 001007 274 FELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 347 (1191)
Q Consensus 274 lEIYNE~V~DLL~~~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~ 347 (1191)
+|||||+|+|||.+... ..++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.
T Consensus 160 ~EIYnE~i~DLL~~~~~--l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 237 (355)
T 3lre_A 160 LEVYNEQIRDLLVNSGP--LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLR 237 (355)
T ss_dssp EEEETTEEEESSSCCCC--BEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEE
T ss_pred EEEECCEEEECcCCCCC--ceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEE
Confidence 99999999999987543 3444443 34577999999999999999999999999998875 9999999999999
Q ss_pred EeeccC---CceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC---CCcccCCCCccccccc
Q 001007 348 YNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLA 421 (1191)
Q Consensus 348 ~~n~~t---g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k---k~hVPYRdSKLTrLLq 421 (1191)
+.+... .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+|||
T Consensus 238 ~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~ 317 (355)
T 3lre_A 238 QQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLK 317 (355)
T ss_dssp EEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTT
T ss_pred EecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHH
Confidence 876532 2345799999999999999999999999999999999999999999999874 3599999999999999
Q ss_pred cccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhc
Q 001007 422 DSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 459 (1191)
Q Consensus 422 DSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I 459 (1191)
|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 318 dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 318 DSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp TTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999875
No 8
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=9.1e-80 Score=695.68 Aligned_cols=318 Identities=36% Similarity=0.553 Sum_probs=263.4
Q ss_pred CCCCEEEEEeeCCCCC-CC--CCceEeec--C----CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHh
Q 001007 142 AKGNIKVFCRTRPLFE-DE--GPSVVEFT--D----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQ 212 (1191)
Q Consensus 142 lkGnIRV~~RVRPl~~-~E--~~svV~~~--d----~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~ 212 (1191)
+||||||||||||+++ .| ...++.+. + ..++.+..+.. ....+.|+||+||+++++|++||++|.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG--TTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC--CcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999987 34 22333332 1 23455543321 2345899999999999999999999999999
Q ss_pred hhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCC-
Q 001007 213 SALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG- 291 (1191)
Q Consensus 213 svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~- 291 (1191)
++++|||+||||||||||||||||+|+ ++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+....
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999996 57999999999999987655567899999999999999999999876432
Q ss_pred -------ceEEEec---ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCcee
Q 001007 292 -------LAKIRLQ---SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENL 357 (1191)
Q Consensus 292 -------~~~i~~~---~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~ 357 (1191)
...++.+ ....+.++++..|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+..++...
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHS 236 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEE
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCcee
Confidence 1223332 223566899999999999999999999999998874 89999999999999887778888
Q ss_pred eeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCcceEEEE
Q 001007 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIV 434 (1191)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk---~hVPYRdSKLTrLLqDSLGGNSKTlMIv 434 (1191)
.|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+||+
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999865 8999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001007 435 NICPNAANMSETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 435 ~ISPs~~~~eETLsTLrFAsRAr~I~~~~ 463 (1191)
||||+..+++||++||+||+||++|.+++
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999987653
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.5e-79 Score=688.47 Aligned_cols=308 Identities=36% Similarity=0.564 Sum_probs=277.2
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhc
Q 001007 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 215 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svL 215 (1191)
..++||||+|||||+++.| ...++.++++.++.+. .+.|.||+||+++++|++||+.+ .|+|++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 74 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHh
Confidence 4579999999999998766 2346667777777652 37899999999999999999985 89999999
Q ss_pred CCccEEEEeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCCc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 292 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs~~---~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~~ 292 (1191)
+|||+||||||||||||||||+|+.. ++|||||++++||+.+... ..++.|.|+|||+|||||+|+|||++.....
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l 153 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHH-CSSEEEEEEEEEEEEETTEEEESSCTTCCSB
T ss_pred CCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEecCeeeecccCCCCCc
Confidence 99999999999999999999999754 4699999999999988643 3468999999999999999999998765443
Q ss_pred eEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEec
Q 001007 293 AKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDL 366 (1191)
Q Consensus 293 ~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDL 366 (1191)
.++.+. ...+.++++..|.++++++++|..|.++|.++.|. |||||+||+|+|.+.+...+....|+|+||||
T Consensus 154 -~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDL 232 (325)
T 1bg2_A 154 -SVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232 (325)
T ss_dssp -CEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEEC
T ss_pred -eEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEEC
Confidence 333332 23567899999999999999999999999999986 89999999999999887777778999999999
Q ss_pred CCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHH
Q 001007 367 AGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 446 (1191)
Q Consensus 367 AGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eET 446 (1191)
|||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 233 AGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ET 312 (325)
T 1bg2_A 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312 (325)
T ss_dssp CCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhc
Q 001007 447 LSSLNFSSRARST 459 (1191)
Q Consensus 447 LsTLrFAsRAr~I 459 (1191)
++||+||+||++|
T Consensus 313 l~TL~fa~rak~I 325 (325)
T 1bg2_A 313 KSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999999875
No 10
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.1e-79 Score=693.23 Aligned_cols=319 Identities=33% Similarity=0.514 Sum_probs=255.4
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEee-cCCcEEEEecCCCc-----cCCCCceeecceeeCCCCChhhHHhc-hHHhH
Q 001007 143 KGNIKVFCRTRPLFEDE----GPSVVEF-TDDCTIRVNTGDDT-----ISNPKKDFEFDRVYGPHVGQAELFSD-VQPFV 211 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E----~~svV~~-~d~~tI~v~~~~~~-----~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV 211 (1191)
.+||||||||||+++.| ...++.+ +++.+|.+..+... .....+.|+||+||+++++|++||+. +.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 58999999999998765 2345655 34567777665321 12345899999999999999999998 59999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCC
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~ 291 (1191)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. ....+.|.|+|||+|||||+|+|||.+..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 159 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINS-SSSNQNFLVIGSYLELYNEEIRDLIKNNT-- 159 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHT-CCTTEEEEEEEEEEEEETTEEEETTTTEE--
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHh-hccCCcEEEEEEEEEEeCCEEEEcccCCc--
Confidence 999999999999999999999999999999999999999999999874 34568899999999999999999998432
Q ss_pred ceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCc--eeeeeeeE
Q 001007 292 LAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSL 363 (1191)
Q Consensus 292 ~~~i~~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~--~~~SkL~L 363 (1191)
...++.+ ....+.+++++.|.++++++.+|..|.++|+++.|. |||||+||+|+|.+.+...+. ...|+|+|
T Consensus 160 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~l 239 (350)
T 2vvg_A 160 KLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNL 239 (350)
T ss_dssp EECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEE
T ss_pred CceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEE
Confidence 2233332 234567899999999999999999999999998875 999999999999987654443 46799999
Q ss_pred EecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCH
Q 001007 364 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANM 443 (1191)
Q Consensus 364 VDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~ 443 (1191)
||||||||..++++.|++++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+||+||||+..++
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~ 319 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNY 319 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhcccccC
Q 001007 444 SETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 444 eETLsTLrFAsRAr~I~~~~~ 464 (1191)
+||++||+||+||++|++.+.
T Consensus 320 ~ETl~TL~fA~rak~i~n~~~ 340 (350)
T 2vvg_A 320 DETMSTLRYADRAKQIKNKPR 340 (350)
T ss_dssp HHHHHHHHHHHHHTTCBCCCC
T ss_pred HHHHHHHHHHHHHhhccccce
Confidence 999999999999999987654
No 11
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=2.5e-79 Score=695.87 Aligned_cols=314 Identities=33% Similarity=0.545 Sum_probs=262.2
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeecC---CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHh
Q 001007 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFTD---DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQ 212 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E----~~svV~~~d---~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~ 212 (1191)
..+|||+|||||||+++.| ...++.+++ +.++.+ ..+.|+||+||+++++|++||+.+ .|+|+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 78 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---------AGKVYLFDKVFKPNASQEKVYNEAAKSIVT 78 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---------CCEEEeCceEecCCCCHHHHHHHhhhhHHH
Confidence 4679999999999998765 234555554 334433 237899999999999999999985 89999
Q ss_pred hhcCCccEEEEeeccCCCCcccccccCC---CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC
Q 001007 213 SALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1191)
Q Consensus 213 svLdGyN~~IfAYGQTGSGKTyTM~Gs~---~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 289 (1191)
++++|||+||||||||||||||||+|+. .++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||++..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAM-EVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEECCeeeecccCCc
Confidence 9999999999999999999999999964 45799999999999988643 3568999999999999999999998765
Q ss_pred CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeE
Q 001007 290 NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSL 363 (1191)
Q Consensus 290 ~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~L 363 (1191)
... .++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+...+....|+|+|
T Consensus 158 ~~l-~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~l 236 (365)
T 2y65_A 158 VNL-SVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 236 (365)
T ss_dssp CSB-CEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCc-eEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEE
Confidence 443 333332 33567899999999999999999999999999986 89999999999999887777788999999
Q ss_pred EecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCC
Q 001007 364 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1191)
Q Consensus 364 VDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k-k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1191)
||||||||+.++++.|.+++|+.+||+||++||+||.+|+++ +.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 237 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 316 (365)
T 2y65_A 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFN 316 (365)
T ss_dssp EECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCC
Confidence 999999999999999999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhcccccCc
Q 001007 443 MSETLSSLNFSSRARSTVLSLGN 465 (1191)
Q Consensus 443 ~eETLsTLrFAsRAr~I~~~~~n 465 (1191)
++||++||+||+||++|++.+..
T Consensus 317 ~~ETl~TL~fA~rak~I~n~~~~ 339 (365)
T 2y65_A 317 ESETKSTLDFGRRAKTVKNVVCV 339 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCccee
Confidence 99999999999999999876543
No 12
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-79 Score=699.31 Aligned_cols=325 Identities=28% Similarity=0.457 Sum_probs=249.1
Q ss_pred hhcccCCCCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhH
Q 001007 137 NDLLTAKGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFV 211 (1191)
Q Consensus 137 N~l~elkGnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV 211 (1191)
-.....++||+|+|||||+++.|. ..|+...+++++.+..+.. ....+.|+||+||+++++|++||+. +.|+|
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv 91 (388)
T 3bfn_A 14 LYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPIL 91 (388)
T ss_dssp CCSSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGH
T ss_pred ccccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHHHH
Confidence 445678999999999999998763 2455555666666543321 1234789999999999999999997 69999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccC--cccccccceeEEEEEEechhhhcccCCCC
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAVTVFELYNEQLRELLPQTG 289 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~--~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 289 (1191)
+++|+|||+||||||||||||||||+|+++++|||||++++||+.+... ....+.|.|+|||+|||||+|+|||++..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~ 171 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS 171 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS
T ss_pred HHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC
Confidence 9999999999999999999999999999999999999999999988642 23467899999999999999999998865
Q ss_pred CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccC-Cceeeeeee
Q 001007 290 NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-GENLYSKLS 362 (1191)
Q Consensus 290 ~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~t-g~~~~SkL~ 362 (1191)
... .++.+. ...+.++++..|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+... .....|+|+
T Consensus 172 ~~l-~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~ 250 (388)
T 3bfn_A 172 GDL-VIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLY 250 (388)
T ss_dssp CBC-CCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEE
T ss_pred CCc-eEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEE
Confidence 433 333332 34567899999999999999999999999998875 8999999999999876543 345789999
Q ss_pred EEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCC
Q 001007 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1191)
Q Consensus 363 LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1191)
|||||||||..++++.|.|++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 251 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~ 330 (388)
T 3bfn_A 251 LIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRF 330 (388)
T ss_dssp EEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGG
T ss_pred EEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhcccccC
Q 001007 443 MSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 443 ~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
++||++||+||+||++|++.+.
T Consensus 331 ~~ETlsTLrfA~rak~I~n~p~ 352 (388)
T 3bfn_A 331 YLDTVSALNFAARSKEVINRPF 352 (388)
T ss_dssp HHHHHHHHHHHCSEEEEC----
T ss_pred HHHHHHHHHHHHHHhhCcCcCc
Confidence 9999999999999999876543
No 13
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.1e-78 Score=691.72 Aligned_cols=326 Identities=32% Similarity=0.476 Sum_probs=269.2
Q ss_pred hhcccCCCCEEEEEeeCCCCCCC----CCceEee-cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHh
Q 001007 137 NDLLTAKGNIKVFCRTRPLFEDE----GPSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPF 210 (1191)
Q Consensus 137 N~l~elkGnIRV~~RVRPl~~~E----~~svV~~-~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PL 210 (1191)
+..++.++||||||||||+++.| ...++.+ ++..+|.+..+........+.|+||+||+++++|++||+.+ .|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 45678899999999999998665 2345555 34567888766544344568999999999999999999985 999
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccccCC---CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCC
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~Gs~---~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~ 287 (1191)
|+++|+|||+||||||||||||||||+|.. .++|||||++++||..+.. ...+.|.|+|||+|||||+|+|||++
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR--SQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT--CSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh--ccCCceEEEEEEEEEeCCEEEECCCC
Confidence 999999999999999999999999999965 4579999999999999875 45789999999999999999999988
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc---CCceee
Q 001007 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLY 358 (1191)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~---tg~~~~ 358 (1191)
.......++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+.. ......
T Consensus 172 ~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~ 251 (372)
T 3b6u_A 172 DQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRV 251 (372)
T ss_dssp CTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEE
T ss_pred CCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEE
Confidence 655444454433 34567899999999999999999999999999986 899999999999886542 233567
Q ss_pred eeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC-CcccCCCCccccccccccCCCcceEEEEEeC
Q 001007 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNIC 437 (1191)
Q Consensus 359 SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk-~hVPYRdSKLTrLLqDSLGGNSKTlMIv~IS 437 (1191)
|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+||+|||
T Consensus 252 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vs 331 (372)
T 3b6u_A 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVG 331 (372)
T ss_dssp EEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeC
Confidence 999999999999999999999999999999999999999999998865 6999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhHHHHHHhhcccccC
Q 001007 438 PNAANMSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 438 Ps~~~~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
|+..+++||++||+||+||++|++.+.
T Consensus 332 P~~~~~~ETlsTLrfA~rak~I~n~~~ 358 (372)
T 3b6u_A 332 PASYNVEETLTTLRYANRAKNIKNKPR 358 (372)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCBCCCC
T ss_pred CcccCHHHHHHHHHHHHHHhhccccce
Confidence 999999999999999999999987654
No 14
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.5e-79 Score=702.19 Aligned_cols=327 Identities=28% Similarity=0.388 Sum_probs=264.1
Q ss_pred HHHHhhhhhhcccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCCh
Q 001007 129 INEKKRLFNDLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQ 200 (1191)
Q Consensus 129 ~~eRrkLhN~l~elkGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~p~asQ 200 (1191)
...|+..||+..+ ++||+|||||||+++.| ...++.+++++++.+..+..... ...+.|+||+||+++++|
T Consensus 57 ~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ 135 (410)
T 1v8k_A 57 MECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASN 135 (410)
T ss_dssp HTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCH
T ss_pred hccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCCh
Confidence 3447788888776 89999999999998765 24577888888887765432211 124789999999999999
Q ss_pred hhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccCC------CCCChHHHHHHHHHHhhccCcccccccceeEEE
Q 001007 201 AELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTV 273 (1191)
Q Consensus 201 eeVFeeV-~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~------~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~ 273 (1191)
++||+.+ .|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+.......+.|.|+|||
T Consensus 136 ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~ 215 (410)
T 1v8k_A 136 EVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTF 215 (410)
T ss_dssp HHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEE
T ss_pred hhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEE
Confidence 9999985 999999999999999999999999999999963 468999999999999887544456789999999
Q ss_pred EEEechhhhcccCCCCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEE
Q 001007 274 FELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 347 (1191)
Q Consensus 274 lEIYNE~V~DLL~~~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~ 347 (1191)
+|||||+|+|||++.. ...++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.
T Consensus 216 lEIYnE~i~DLL~~~~--~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 293 (410)
T 1v8k_A 216 FEIYNGKVFDLLNKKA--KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR 293 (410)
T ss_dssp EEEETTEEEETTTTTE--EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEE
T ss_pred EEeeCCEEEECCCCCC--CceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEE
Confidence 9999999999998743 23344332 34577999999999999999999999999998874 9999999999998
Q ss_pred EeeccCCceeeeeeeEEecCCCccccccC-CcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccc-cC
Q 001007 348 YNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LG 425 (1191)
Q Consensus 348 ~~n~~tg~~~~SkL~LVDLAGSER~~ks~-a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDS-LG 425 (1191)
+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+ ||
T Consensus 294 ~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllG 368 (410)
T 1v8k_A 294 TKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG 368 (410)
T ss_dssp SSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHS
T ss_pred eCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccC
Confidence 652 467999999999999998876 46789999999999999999999999999999999999999999999 69
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001007 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 426 GNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~ 463 (1191)
|||+|+||+||||+..+++||++||+||+||++|..++
T Consensus 369 gnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 369 ENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp SSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred CCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999986543
No 15
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.9e-78 Score=686.65 Aligned_cols=318 Identities=35% Similarity=0.511 Sum_probs=282.9
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001007 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svL 215 (1191)
...|||||+|||||+++.| ...++.+.++.++.+.... ..+.|+||+||+++++|++||+. +.|+|++++
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE-----AQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTT-----CCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCC-----CccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 3479999999999998644 3467788777777665332 35899999999999999999997 699999999
Q ss_pred CCccEEEEeeccCCCCcccccccC----CCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCCC
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs----~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~~ 291 (1191)
+|||+||||||||||||||||+|+ +.++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||++....
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSS-AANIEYTVRVSYMEIYMERIRDLLAPQNDN 156 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSTTCCS
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhc-ccCceEEEEEEEEEEECCEEEEcccCccCC
Confidence 999999999999999999999996 466899999999999988643 456789999999999999999999887654
Q ss_pred ceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCc----CCceeEEEEEEEEEEeeccCCceeeeeeeEEe
Q 001007 292 LAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLSLVD 365 (1191)
Q Consensus 292 ~~~i~~~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T----~SSRSH~IftI~V~~~n~~tg~~~~SkL~LVD 365 (1191)
.. ++.+ ....+.+++++.|.++++++.+|..|..+|.++.| .|||||+||+|+|.+.+...+....|+|+|||
T Consensus 157 l~-i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 235 (355)
T 1goj_A 157 LP-VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD 235 (355)
T ss_dssp CC-EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred ce-eEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEE
Confidence 33 3332 23456789999999999999999999999988776 49999999999999988877778899999999
Q ss_pred cCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001007 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1191)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k-k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~e 444 (1191)
||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++
T Consensus 236 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ 315 (355)
T 1goj_A 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315 (355)
T ss_dssp CCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHH
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhcccccCc
Q 001007 445 ETLSSLNFSSRARSTVLSLGN 465 (1191)
Q Consensus 445 ETLsTLrFAsRAr~I~~~~~n 465 (1191)
||++||+||+||++|++.+..
T Consensus 316 ETl~TL~fA~rak~I~n~~~v 336 (355)
T 1goj_A 316 ETLSTLRFGMRAKSIKNKAKV 336 (355)
T ss_dssp HHHHHHHHHHHHHTCBCCCCC
T ss_pred HHHHHHHHHHHHhhccCCcee
Confidence 999999999999999876543
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-78 Score=689.11 Aligned_cols=316 Identities=28% Similarity=0.379 Sum_probs=250.8
Q ss_pred cCCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCcc------CCCCceeecceeeCCCCChhhHHhch-HHhHhh
Q 001007 141 TAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQS 213 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~------~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~s 213 (1191)
..+|||||||||||+.+.|...+...++..+|.+..+.... ....+.|+||+||+ +++|++||+.+ .|+|++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~ 99 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 99 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHH
Confidence 57899999999999987776555555667788887664321 22346899999997 58999999986 899999
Q ss_pred hcCCccEEEEeeccCCCCcccccccCCC---CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 290 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM~Gs~~---~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~ 290 (1191)
+|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.. .+.+.|.|+|||+|||||+|+|||++...
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 177 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEE--RPTHAITVRVSYLEIYNESLFDLLSTLPY 177 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHT--CTTSCEEEEEEEEEEETTEEEETTSSSTT
T ss_pred HhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhc--CCCCcEEEEEEEEEEeccccccccccccc
Confidence 9999999999999999999999999754 489999999999998864 34678999999999999999999986432
Q ss_pred C-----ceEEEec-ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCc----CCceeEEEEEEEEEEeecc--CCceee
Q 001007 291 G-----LAKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLI--TGENLY 358 (1191)
Q Consensus 291 ~-----~~~i~~~-~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T----~SSRSH~IftI~V~~~n~~--tg~~~~ 358 (1191)
. ...++.+ ....+.+++++.|.+++++..++..|.++|.++.| .|||||+||+|+|.+.... .+....
T Consensus 178 ~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~ 257 (359)
T 3nwn_A 178 VGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYIT 257 (359)
T ss_dssp SCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEE
T ss_pred cccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccccc
Confidence 1 2223322 23456789999999999999999999999998876 4999999999999876543 234567
Q ss_pred eeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc-CCCcccCCCCccccccccccCCCcceEEEEEeC
Q 001007 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVNIC 437 (1191)
Q Consensus 359 SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~-kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~IS 437 (1191)
|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.+|++ ++.||||||||||+||||+|||||+|+||||||
T Consensus 258 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~is 337 (359)
T 3nwn_A 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY 337 (359)
T ss_dssp EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred ccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeC
Confidence 9999999999999999999999999999999999999999999987 457999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhHHHHHHhhc
Q 001007 438 PNAANMSETLSSLNFSSRARST 459 (1191)
Q Consensus 438 Ps~~~~eETLsTLrFAsRAr~I 459 (1191)
|+..+++||++||+||+|||+|
T Consensus 338 P~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 338 GEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CSGGGHHHHHHHHHHHTTGGGC
T ss_pred CchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999975
No 17
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.7e-78 Score=689.58 Aligned_cols=319 Identities=30% Similarity=0.492 Sum_probs=263.9
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCC--------CChhhHHhch-HH
Q 001007 143 KGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH--------VGQAELFSDV-QP 209 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~--------asQeeVFeeV-~P 209 (1191)
.+||||||||||+++.| ...++.+.++. +.+..+.. .....+.|+||+||+++ ++|++||+.+ .|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~i~~~~~-~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGST-TTIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTE-EEECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCc-EEEeccCC-CCCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 47999999999998665 23456665544 44433322 12345899999999987 8999999986 89
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCC--CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCC
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~--~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~ 287 (1191)
+|+++|+|||+||||||||||||||||+|+. .++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 9999999999999999999999999999984 57899999999999999866666789999999999999999999998
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCC----cee
Q 001007 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG----ENL 357 (1191)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg----~~~ 357 (1191)
.......++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.+...... ...
T Consensus 161 ~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 240 (366)
T 2zfi_A 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK 240 (366)
T ss_dssp TTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEE
T ss_pred ccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCcccee
Confidence 765555555543 34567899999999999999999999999998885 89999999999987654322 235
Q ss_pred eeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc------------CCCcccCCCCccccccccccC
Q 001007 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------------RKDIVPYENSMLTKVLADSLG 425 (1191)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~------------kk~hVPYRdSKLTrLLqDSLG 425 (1191)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+||||+||
T Consensus 241 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLg 320 (366)
T 2zfi_A 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 320 (366)
T ss_dssp EEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSS
T ss_pred EeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999986 357999999999999999999
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001007 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 426 GNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~ 463 (1191)
|||+|+||+||||+..+++||++||+||+||++|++.+
T Consensus 321 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~ 358 (366)
T 2zfi_A 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358 (366)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC------
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999998654
No 18
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=6.2e-79 Score=696.14 Aligned_cols=325 Identities=28% Similarity=0.407 Sum_probs=262.2
Q ss_pred HHHHhhhhhhcccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCCh
Q 001007 129 INEKKRLFNDLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQ 200 (1191)
Q Consensus 129 ~~eRrkLhN~l~elkGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~p~asQ 200 (1191)
...|+.+||+..+ ++||+|||||||+++.| ...++.+++++++.+..+..... ...+.|+||+||+++++|
T Consensus 37 ~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ 115 (387)
T 2heh_A 37 LECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASN 115 (387)
T ss_dssp CCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCH
T ss_pred hccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCc
Confidence 3457888998877 99999999999998765 24577888888877765432211 124789999999999999
Q ss_pred hhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccC------CCCCChHHHHHHHHHHhhccCcccccccceeEEE
Q 001007 201 AELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTV 273 (1191)
Q Consensus 201 eeVFeeV-~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs------~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~ 273 (1191)
++||+.+ .|+|+++|+|||+||||||||||||||||+|+ ..++|||||++++||..+.......+.|.|+|||
T Consensus 116 ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~ 195 (387)
T 2heh_A 116 EVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTF 195 (387)
T ss_dssp HHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEE
T ss_pred eeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEE
Confidence 9999985 99999999999999999999999999999996 3568999999999999887544456789999999
Q ss_pred EEEechhhhcccCCCCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEE
Q 001007 274 FELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 347 (1191)
Q Consensus 274 lEIYNE~V~DLL~~~~~~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~ 347 (1191)
+|||||+|+|||++... ..++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.
T Consensus 196 ~EIYnE~v~DLL~~~~~--l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 273 (387)
T 2heh_A 196 FEIYNGKLFDLLNKKAK--LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR 273 (387)
T ss_dssp EEEETTEEEETTTTTEE--CEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEE
T ss_pred EEecCCeEEECCCCCcc--ceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEE
Confidence 99999999999987532 3344332 34577899999999999999999999999998874 9999999999998
Q ss_pred EeeccCCceeeeeeeEEecCCCccccccC-CcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccc-cC
Q 001007 348 YNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LG 425 (1191)
Q Consensus 348 ~~n~~tg~~~~SkL~LVDLAGSER~~ks~-a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDS-LG 425 (1191)
+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+ ||
T Consensus 274 ~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllG 348 (387)
T 2heh_A 274 AK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG 348 (387)
T ss_dssp SS-----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSS
T ss_pred EC-----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccC
Confidence 64 2467999999999999998876 46789999999999999999999999999999999999999999999 69
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhccc
Q 001007 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461 (1191)
Q Consensus 426 GNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~ 461 (1191)
|||+|+||+||||+..+++||++||+||+||++|+.
T Consensus 349 gnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~ 384 (387)
T 2heh_A 349 ENSRTCMIATISPGISSCEYTLNTLRYADRVKELSP 384 (387)
T ss_dssp TTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcC
Confidence 999999999999999999999999999999999864
No 19
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1e-78 Score=692.83 Aligned_cols=321 Identities=33% Similarity=0.505 Sum_probs=263.3
Q ss_pred ccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001007 140 LTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1191)
Q Consensus 140 ~elkGnIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~sv 214 (1191)
.+.++||+|||||||+++.| ...++.+.++..+.+..... ....+.|+||+||+++++|++||+. +.|+|+++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~ 96 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEV 96 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHH
Confidence 46789999999999998765 34577777777777754322 2345899999999999999999998 59999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCC-----------CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTMEGSSH-----------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~Gs~~-----------~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~D 283 (1191)
|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.. ..+.|.|+|||+|||||+|+|
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~D 173 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM---MEVEYTMRISYLELYNEELCD 173 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHH---CCSCEEEEEEEEEEETTEEEE
T ss_pred hCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHh---cCceEEEEEEEEEEeCCeEEE
Confidence 999999999999999999999999753 689999999999998864 246899999999999999999
Q ss_pred ccCCCCCCceEEEecc----cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc-CC
Q 001007 284 LLPQTGNGLAKIRLQS----LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI-TG 354 (1191)
Q Consensus 284 LL~~~~~~~~~i~~~~----~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~-tg 354 (1191)
||.+.......+..+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|...... .+
T Consensus 174 LL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 253 (373)
T 2wbe_C 174 LLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG 253 (373)
T ss_dssp SSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTT
T ss_pred CCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCC
Confidence 9987654444444331 23567899999999999999999999999999986 899999999999876432 22
Q ss_pred --ceeeeeeeEEecCCCccccccCCc-chhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceE
Q 001007 355 --ENLYSKLSLVDLAGSEGLIAEDDS-GERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 355 --~~~~SkL~LVDLAGSER~~ks~a~-G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
....|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||+|+
T Consensus 254 ~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 333 (373)
T 2wbe_C 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTS 333 (373)
T ss_dssp CCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEE
T ss_pred CcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEE
Confidence 235799999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHhhcccccCc
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 465 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~n 465 (1191)
||+||||+..+++||++||+||+||++|++.+..
T Consensus 334 mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~v 367 (373)
T 2wbe_C 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPEV 367 (373)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCC
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhcccccee
Confidence 9999999999999999999999999999876643
No 20
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=5.9e-79 Score=691.82 Aligned_cols=321 Identities=32% Similarity=0.473 Sum_probs=258.7
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhh
Q 001007 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSA 214 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E----~~svV~~~-d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~sv 214 (1191)
+.++||+|||||||+++.| ...++.+. +...|.+..+........+.|+||+||+++++|++||+.+ .|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 4679999999999998655 23455553 3456666543221122357999999999999999999985 8999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCC-----------CCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTMEGSSH-----------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~Gs~~-----------~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~D 283 (1191)
|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. ..+.|.|+|||+|||||+|+|
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD---NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS---SSEEEEEEEEEEEEETTEEEE
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc---cCceEEEEEEEEEEeCceeee
Confidence 999999999999999999999999753 369999999999998864 467899999999999999999
Q ss_pred ccCCCCCC--ceEEEecc----cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc-
Q 001007 284 LLPQTGNG--LAKIRLQS----LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI- 352 (1191)
Q Consensus 284 LL~~~~~~--~~~i~~~~----~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~- 352 (1191)
||++.... ...++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|...+..
T Consensus 162 LL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~ 241 (359)
T 1x88_A 162 LLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241 (359)
T ss_dssp TTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT
T ss_pred hhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC
Confidence 99886542 23343332 34567899999999999999999999999988764 899999999999876532
Q ss_pred CCc--eeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcce
Q 001007 353 TGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1191)
Q Consensus 353 tg~--~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKT 430 (1191)
.+. ...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+..||||||||||+||||+|||||+|
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt 321 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRT 321 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeE
Confidence 222 357999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001007 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 431 lMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
+||+||||+..+++||++||+||+||++|++.+.
T Consensus 322 ~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~ 355 (359)
T 1x88_A 322 SIIATISPASLNLEETLSTLEYAHRAKNILNKPE 355 (359)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhhccCcce
Confidence 9999999999999999999999999999987653
No 21
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-77 Score=676.33 Aligned_cols=312 Identities=32% Similarity=0.443 Sum_probs=264.2
Q ss_pred CCCEEEEEeeCCCCCCCCC----ceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcC
Q 001007 143 KGNIKVFCRTRPLFEDEGP----SVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALD 216 (1191)
Q Consensus 143 kGnIRV~~RVRPl~~~E~~----svV~~~-d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV-~PLV~svLd 216 (1191)
.|+|+|||||||+++.|.. .++.+. ++..+... ...+.|+||+||+++++|++||+.+ .|+|+++++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 75 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ 75 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 6999999999999987742 223332 33333321 1247899999999999999999986 899999999
Q ss_pred CccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCCC-CceEE
Q 001007 217 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-GLAKI 295 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~~-~~~~i 295 (1191)
|||+||||||||||||||||+|+++++|||||++++||+.+... +...|.|+|||+|||||+|+|||.+... ....+
T Consensus 76 G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 153 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF--PDREFLLRVSYMEIYNETITDLLCGTQKMKPLII 153 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC--TTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEE
T ss_pred CCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC--cCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceE
Confidence 99999999999999999999999999999999999999998753 4678999999999999999999987643 23445
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccC-----CceeeeeeeEE
Q 001007 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-----GENLYSKLSLV 364 (1191)
Q Consensus 296 ~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~t-----g~~~~SkL~LV 364 (1191)
+.+. ...+.++++..|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+... +....|+|+||
T Consensus 154 ~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lV 233 (349)
T 1t5c_A 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233 (349)
T ss_dssp EETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEE
Confidence 5443 23566899999999999999999999999998875 8999999999999876432 34567999999
Q ss_pred ecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC--CcccCCCCccccccccccCCCcceEEEEEeCCCCCC
Q 001007 365 DLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1191)
Q Consensus 365 DLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk--~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1191)
|||||||..++++.|.|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+||+||||. +
T Consensus 234 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp ECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred ECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 999999999999999999999999999999999999999765 699999999999999999999999999999996 6
Q ss_pred HHHHHHHhHHHHHHhhcccccCc
Q 001007 443 MSETLSSLNFSSRARSTVLSLGN 465 (1191)
Q Consensus 443 ~eETLsTLrFAsRAr~I~~~~~n 465 (1191)
++||++||+||+||++|++.+..
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~v 334 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPYV 334 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHhhcccCcee
Confidence 99999999999999999876543
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.1e-77 Score=680.85 Aligned_cols=318 Identities=28% Similarity=0.391 Sum_probs=249.4
Q ss_pred hcccCCCCEEEEEeeCCCCCCCCCceEee-cCCcEEEEecCCCcc------CCCCceeecceeeCCCCChhhHHhch-HH
Q 001007 138 DLLTAKGNIKVFCRTRPLFEDEGPSVVEF-TDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSDV-QP 209 (1191)
Q Consensus 138 ~l~elkGnIRV~~RVRPl~~~E~~svV~~-~d~~tI~v~~~~~~~------~~~~k~F~FD~VF~p~asQeeVFeeV-~P 209 (1191)
.-.+++|||||||||||+.+.+.. ++.+ +++.++.+..+.... ....+.|+||+||+ +++|++||+.+ .|
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~~-~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~ 94 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAHE-MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 94 (358)
T ss_dssp ------CCEEEEEEECCCSSCCTT-TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCccc-eeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHH
Confidence 456799999999999999765543 3444 566777776654321 12346899999995 88999999986 89
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCCCC---CChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccC
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~---~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~ 286 (1191)
+|+++++|||+||||||||||||||||+|+..+ +|||||++++||+.++.. ..+.|.|+|||+|||||+|+|||+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER--PTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC--TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc--CCceEEEEEEEEEEeCCeeeECcC
Confidence 999999999999999999999999999998764 899999999999998753 467899999999999999999998
Q ss_pred CCCC-----CceEEEec-ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc--CC
Q 001007 287 QTGN-----GLAKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG 354 (1191)
Q Consensus 287 ~~~~-----~~~~i~~~-~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~--tg 354 (1191)
+.+. ....++.+ ....+.++++..|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+.. .+
T Consensus 173 ~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 252 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 252 (358)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred CccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCC
Confidence 7432 22233332 334577899999999999999999999999988763 999999999999886532 23
Q ss_pred ceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCcceEEE
Q 001007 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMI 433 (1191)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k-k~hVPYRdSKLTrLLqDSLGGNSKTlMI 433 (1191)
....|+|+|||||||||+.++++.|++++|+.+||+||++||+||.+|+++ +.||||||||||+||||+|||||+|+||
T Consensus 253 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 253 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 446799999999999999999999999999999999999999999999874 5799999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHhHHHHHHhhc
Q 001007 434 VNICPNAANMSETLSSLNFSSRARST 459 (1191)
Q Consensus 434 v~ISPs~~~~eETLsTLrFAsRAr~I 459 (1191)
+||||+..+++||++||+||+|||.|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999875
No 23
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.2e-77 Score=693.04 Aligned_cols=325 Identities=31% Similarity=0.456 Sum_probs=258.3
Q ss_pred hcccCCCCEEEEEeeCCCCCCC----CCceEeecC-CcEEEEecCCCc-----------cCCCCceeecceeeCCC----
Q 001007 138 DLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTD-DCTIRVNTGDDT-----------ISNPKKDFEFDRVYGPH---- 197 (1191)
Q Consensus 138 ~l~elkGnIRV~~RVRPl~~~E----~~svV~~~d-~~tI~v~~~~~~-----------~~~~~k~F~FD~VF~p~---- 197 (1191)
...++++||||||||||+++.| ...++.+.+ ...+.+..+... .....+.|+||+||+++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~ 111 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTS
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCC
Confidence 4568999999999999998655 234555543 234444333211 01235899999999864
Q ss_pred ---CChhhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccC--cccccccceeE
Q 001007 198 ---VGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAV 271 (1191)
Q Consensus 198 ---asQeeVFeeV-~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~--~~~~~~f~V~V 271 (1191)
++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+... ..+++.|.|+|
T Consensus 112 ~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~v 191 (443)
T 2owm_A 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKV 191 (443)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEE
T ss_pred ccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEE
Confidence 8999999986 89999999999999999999999999999999999999999999999988754 34578999999
Q ss_pred EEEEEechhhhcccCCCCC----CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEE
Q 001007 272 TVFELYNEQLRELLPQTGN----GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLI 341 (1191)
Q Consensus 272 S~lEIYNE~V~DLL~~~~~----~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~I 341 (1191)
||+|||||+|+|||.+... ....++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+|
T Consensus 192 S~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~I 271 (443)
T 2owm_A 192 SYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAV 271 (443)
T ss_dssp EEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEE
T ss_pred EEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEE
Confidence 9999999999999987321 224455432 34577999999999999999999999999998875 8999999
Q ss_pred EEEEEEEeecc----CCceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCC-----------
Q 001007 342 IMIHIYYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK----------- 406 (1191)
Q Consensus 342 ftI~V~~~n~~----tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk----------- 406 (1191)
|+|+|.+.... ......|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.+|++++
T Consensus 272 fti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~ 351 (443)
T 2owm_A 272 FTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVK 351 (443)
T ss_dssp EEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-------------
T ss_pred EEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccc
Confidence 99999875421 223467999999999999999999999999999999999999999999998643
Q ss_pred -----------CcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001007 407 -----------DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 407 -----------~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
.||||||||||+||||+|||||+|+||+||||+ +++||++||+||+||++|++.+.
T Consensus 352 ~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~ 418 (443)
T 2owm_A 352 SGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAV 418 (443)
T ss_dssp ------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCC
T ss_pred cccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccce
Confidence 389999999999999999999999999999996 69999999999999999987654
No 24
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.3e-77 Score=677.62 Aligned_cols=314 Identities=34% Similarity=0.502 Sum_probs=252.7
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCc-----cCCCCceeecceee--------CCCCChhhHHhc
Q 001007 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDT-----ISNPKKDFEFDRVY--------GPHVGQAELFSD 206 (1191)
Q Consensus 144 GnIRV~~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~-----~~~~~k~F~FD~VF--------~p~asQeeVFee 206 (1191)
.||+|+|||||+++.|. ..++.+++ ..+.+.++... .....+.|+||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~ 79 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDA-NKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKC 79 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEET-TEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCC-CeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHH
Confidence 38999999999987662 33455544 45555543211 22346899999999 456789999998
Q ss_pred h-HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhccc
Q 001007 207 V-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL 285 (1191)
Q Consensus 207 V-~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL 285 (1191)
+ .|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.......+.|.|.|||+|||||+|+|||
T Consensus 80 ~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL 159 (354)
T 3gbj_A 80 LGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLL 159 (354)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETT
T ss_pred hhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEcc
Confidence 6 899999999999999999999999999999999999999999999999887655667889999999999999999999
Q ss_pred CCCCC-CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeec----cCC
Q 001007 286 PQTGN-GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL----ITG 354 (1191)
Q Consensus 286 ~~~~~-~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~----~tg 354 (1191)
++.+. ....++.+. ...+.++++..|.+++++..+|..|.++|.++.|. |||||+||+|+|.+... ...
T Consensus 160 ~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 239 (354)
T 3gbj_A 160 DPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239 (354)
T ss_dssp C------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEE
T ss_pred CCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCC
Confidence 87543 222333322 34577999999999999999999999999998875 99999999999987532 122
Q ss_pred ceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc------CCCcccCCCCccccccccccCCCc
Q 001007 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESS 428 (1191)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~------kk~hVPYRdSKLTrLLqDSLGGNS 428 (1191)
....|+|+|||||||||..++++.|+|++|+.+||+||++||+||.+|++ +..||||||||||+||||+|||||
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 34679999999999999999999999999999999999999999999985 457999999999999999999999
Q ss_pred ceEEEEEeCCCCCCHHHHHHHhHHHHHHhh
Q 001007 429 KTLMIVNICPNAANMSETLSSLNFSSRARS 458 (1191)
Q Consensus 429 KTlMIv~ISPs~~~~eETLsTLrFAsRAr~ 458 (1191)
+|+||+||||+..+++||++||+||.||+.
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999975
No 25
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=9.4e-77 Score=670.58 Aligned_cols=306 Identities=30% Similarity=0.506 Sum_probs=247.9
Q ss_pred CCCCEEEEEeeCCCCCCC----CCceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001007 142 AKGNIKVFCRTRPLFEDE----GPSVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1191)
Q Consensus 142 lkGnIRV~~RVRPl~~~E----~~svV~~~-d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svL 215 (1191)
..++|||+|||||+++.| ...++.+. +...+.+ ...+.|.||+||+++++|++||+. +.|+|+++|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l 80 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--------GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFF 80 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--------TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--------cccceEEEEEEEecCcchhHHHHHHHHHHHHHHH
Confidence 368999999999998765 23444443 3334433 134889999999999999999998 599999999
Q ss_pred CCccEEEEeeccCCCCcccccccC------CCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC
Q 001007 216 DGYNVSIFAYGQTHSGKTHTMEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM~Gs------~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 289 (1191)
+|||+||||||||||||||||+|+ .+++|||||++++||+.++.. ....|.|+|||+|||||+|+|||++..
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~ 158 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN--DLLDCLVHVSYLEVYKEEFRDLLEVGT 158 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC--TTSEEEEEEEEEEEETTEEEETTSSCC
T ss_pred hhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc--cceeeEEEEehhhhhHHHHHHHHHhcc
Confidence 999999999999999999999997 367999999999999998753 467899999999999999999998653
Q ss_pred C-CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeecc--------CC
Q 001007 290 N-GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--------TG 354 (1191)
Q Consensus 290 ~-~~~~i~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~--------tg 354 (1191)
. ....++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+.. .+
T Consensus 159 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~ 238 (344)
T 4a14_A 159 ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238 (344)
T ss_dssp CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------
T ss_pred ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccc
Confidence 2 234455443 34567999999999999999999999999988875 899999999999987532 23
Q ss_pred ceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccC---CCcccCCCCccccccccccCCCcceE
Q 001007 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~k---k~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+
T Consensus 239 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 318 (344)
T 4a14_A 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTV 318 (344)
T ss_dssp CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEE
T ss_pred ceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceE
Confidence 456799999999999999999999999999999999999999999999863 46999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHh
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRAR 457 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr 457 (1191)
||+||||+..+++||++||+||+|||
T Consensus 319 mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 319 MIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999985
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-76 Score=672.83 Aligned_cols=315 Identities=28% Similarity=0.388 Sum_probs=267.2
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001007 145 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1191)
Q Consensus 145 nIRV~~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~----~~~k~F~FD~VF~p~asQeeVFee-V~PLV~svL 215 (1191)
||||||||||+++.| ...++.+.++++|.+..+..... ...+.|.||+||+++++|++||+. +.|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 799999999998765 24678888888888765432111 124689999999999999999997 599999999
Q ss_pred C-CccEEEEeeccCCCCcccccccCC-----CCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC
Q 001007 216 D-GYNVSIFAYGQTHSGKTHTMEGSS-----HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1191)
Q Consensus 216 d-GyN~~IfAYGQTGSGKTyTM~Gs~-----~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~ 289 (1191)
+ ||||||||||||||||||||+|+. .++|||||++++||..++.. ...+.|.|+|||+|||||+|+|||.+..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIY-DKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHH-CSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhh-ccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 5 999999999999999999999974 67999999999999988643 2456899999999999999999998754
Q ss_pred CCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEe
Q 001007 290 NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVD 365 (1191)
Q Consensus 290 ~~~~~i~~~~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVD 365 (1191)
.............+.++++..|.++++++.+|..|..+|.++.|. |||||+||+|++.+.+ .....|+|+|||
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~lVD 236 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAFID 236 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEEEE
Confidence 321111112234577899999999999999999999999988774 9999999999998754 345679999999
Q ss_pred cCCCccccccCCcc-hhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHH
Q 001007 366 LAGSEGLIAEDDSG-ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1191)
Q Consensus 366 LAGSER~~ks~a~G-~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~e 444 (1191)
||||||..++++.| .+++|+.+||+||++||+||.+|..++.||||||||||+||||+|||||+|+||+||||+..+++
T Consensus 237 LAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 316 (360)
T 1ry6_A 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCE 316 (360)
T ss_dssp CCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHH
T ss_pred CCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHH
Confidence 99999999999876 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhccccc
Q 001007 445 ETLSSLNFSSRARSTVLSL 463 (1191)
Q Consensus 445 ETLsTLrFAsRAr~I~~~~ 463 (1191)
||++||+||+||++|++.+
T Consensus 317 ETlsTLrfA~rak~i~n~~ 335 (360)
T 1ry6_A 317 QTLNTLRYSSRVKNKGNSK 335 (360)
T ss_dssp HHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhcccCc
Confidence 9999999999999998743
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.1e-76 Score=665.91 Aligned_cols=304 Identities=25% Similarity=0.426 Sum_probs=245.4
Q ss_pred cCCCCEEEEEeeCCCCCCC---CCceEeecC---CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhh
Q 001007 141 TAKGNIKVFCRTRPLFEDE---GPSVVEFTD---DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQS 213 (1191)
Q Consensus 141 elkGnIRV~~RVRPl~~~E---~~svV~~~d---~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFee-V~PLV~s 213 (1191)
...++|||+|||||+.+.+ ...++.+++ +..+.+ ..+.|+||+||+++++|++||+. +.|+|++
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~---------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~ 89 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV---------DQNEFHFDHAFPATISQDEMYQALILPLVDK 89 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe---------cCcEEEcceEECCCCCHHHHHHhhccchhhH
Confidence 5678999999999998655 234555543 333433 24799999999999999999998 5999999
Q ss_pred hcCCccEEEEeeccCCCCcccccccCC------CCCChHHHHHHHHHHhhccCcc-cccccceeEEEEEEechhhhcccC
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTT-ATARFNFAVTVFELYNEQLRELLP 286 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM~Gs~------~~~GIIPRale~LF~~i~~~~~-~~~~f~V~VS~lEIYNE~V~DLL~ 286 (1191)
+++|||+||||||||||||||||+|++ +++|||||++++||+.+..... ....|.|+|||+|||||+|+|||.
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 169 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG 169 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTS
T ss_pred hhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccC
Confidence 999999999999999999999999864 5689999999999998865432 245799999999999999999998
Q ss_pred CCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeee
Q 001007 287 QTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLS 362 (1191)
Q Consensus 287 ~~~~~~~~i~~~~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~ 362 (1191)
+...... ......+++...|.+.+++..+|..|.++|.++.|. |||||+||+|+|.+. ...|+|+
T Consensus 170 ~~~~~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~ 238 (344)
T 3dc4_A 170 STPHMPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMN 238 (344)
T ss_dssp SCTTSBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEE
T ss_pred CCCCCcc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEE
Confidence 7654221 112234778889999999999999999999998875 899999999999753 3579999
Q ss_pred EEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCC
Q 001007 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1191)
Q Consensus 363 LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1191)
|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 239 lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 318 (344)
T 3dc4_A 239 IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318 (344)
T ss_dssp EEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGG
T ss_pred EEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhcccccC
Q 001007 443 MSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 443 ~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
++||++||+||+||+.....+.
T Consensus 319 ~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 319 LSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999998755443
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=3.9e-73 Score=693.00 Aligned_cols=324 Identities=31% Similarity=0.464 Sum_probs=259.2
Q ss_pred hhhhhcccCCCCEEEEEeeC----CCCCCC---CC--ceEeecC------CcEEEEecCCCccCCCCceeecceeeCCCC
Q 001007 134 RLFNDLLTAKGNIKVFCRTR----PLFEDE---GP--SVVEFTD------DCTIRVNTGDDTISNPKKDFEFDRVYGPHV 198 (1191)
Q Consensus 134 kLhN~l~elkGnIRV~~RVR----Pl~~~E---~~--svV~~~d------~~tI~v~~~~~~~~~~~k~F~FD~VF~p~a 198 (1191)
+.-.++..+.+++||||||| |.+..| +. ..++.|+ ...|.+..+.. .....+.|+||+||++++
T Consensus 364 ~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~fd~vf~~~~ 442 (715)
T 4h1g_A 364 AAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN-NNFSNLRFLFDKIFEREQ 442 (715)
T ss_dssp HHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEET-TEEEEEEEECSEEECSSC
T ss_pred HHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCC-CCCCCeEEEeceEeCCCC
Confidence 34455677889999999999 444332 11 2333332 23454443321 223458999999999999
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEec
Q 001007 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYN 278 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYN 278 (1191)
+|++||+.|.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.+......+..|.|+|||+||||
T Consensus 443 ~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyn 520 (715)
T 4h1g_A 443 SNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520 (715)
T ss_dssp CHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999984 5899999999999998766666789999999999999
Q ss_pred hhhhcccCCCCCC--ceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEe
Q 001007 279 EQLRELLPQTGNG--LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN 349 (1191)
Q Consensus 279 E~V~DLL~~~~~~--~~~i~~~~---~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~ 349 (1191)
|+|+|||.+.... ...++... ...+.+++++.|.+++++..+|..|.++|+++.|. |||||+||+|+|.+.
T Consensus 521 e~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~ 600 (715)
T 4h1g_A 521 EAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY 600 (715)
T ss_dssp TEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEE
Confidence 9999999875432 22233222 23567899999999999999999999999988874 999999999999999
Q ss_pred eccCCceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhcc-CCCcccCCCCccccccccccCCCc
Q 001007 350 NLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESS 428 (1191)
Q Consensus 350 n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~-kk~hVPYRdSKLTrLLqDSLGGNS 428 (1191)
+..++....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||
T Consensus 601 ~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~ 680 (715)
T 4h1g_A 601 NSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNS 680 (715)
T ss_dssp ETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTC
T ss_pred ecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCc
Confidence 8888888899999999999999999999999999999999999999999999985 458999999999999999999999
Q ss_pred ceEEEEEeCCCCCCHHHHHHHhHHHHHHhhcc
Q 001007 429 KTLMIVNICPNAANMSETLSSLNFSSRARSTV 460 (1191)
Q Consensus 429 KTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~ 460 (1191)
+|+|||||||+..+++||++||+||+||++|+
T Consensus 681 ~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 681 KTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred eEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999985
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-31 Score=289.69 Aligned_cols=274 Identities=11% Similarity=0.180 Sum_probs=186.3
Q ss_pred cChhHHHHhhhhhhcccCCCCEEEEEeeCCCC-CCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChh--
Q 001007 125 ISPLINEKKRLFNDLLTAKGNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA-- 201 (1191)
Q Consensus 125 ~~~~~~eRrkLhN~l~elkGnIRV~~RVRPl~-~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQe-- 201 (1191)
+..+...||+|||.++|+||||||||||||.. + ....+.+++.+ |.+. . ..+.|.||+||+|.+.|+
T Consensus 5 ~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p--~~~~v~y~~~~-I~v~-~------~~k~f~FDRVf~p~s~Qe~~ 74 (298)
T 2o0a_A 5 VEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP--ENLLFDYENGV-ITQG-L------SEHVYKFNRVIPHLKVSEDK 74 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC--TTEEEETTTTE-EEET-T------TCCEEECSEEEETTTSCHHH
T ss_pred HHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC--ccceeecCccc-eeec-C------CCceEEeeeEECccccccHH
Confidence 33456779999999999999999999999965 4 22347788766 6552 2 128999999999999999
Q ss_pred hHHhchHHhHhhhcC-CccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEe-ch
Q 001007 202 ELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELY-NE 279 (1191)
Q Consensus 202 eVFeeV~PLV~svLd-GyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIY-NE 279 (1191)
+||+++.++|++||+ |||+||||||||||||| ||++..+|.....- ..|.|.+.+||+||| ||
T Consensus 75 ~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~--~~~~Y~~tlq~veLy~Ne 139 (298)
T 2o0a_A 75 FFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTI--YQKQYVITLQFVFLSDDE 139 (298)
T ss_dssp HHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSH--HHHHEEEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhh--cccceEEEEEEEEEecCC
Confidence 999999999999999 99999999999999999 99999999865320 128999999999999 99
Q ss_pred hhhcccCCCCCC-ceEE--EecccccceeeeeeccCC-HHHHHHHHHHHHhhcCCcCcCCc-eeEEEEEEEEEEeeccCC
Q 001007 280 QLRELLPQTGNG-LAKI--RLQSLESSIELVQEKVDN-PLEFSKVLKSAFQSRGNDVSKFN-VSHLIIMIHIYYNNLITG 354 (1191)
Q Consensus 280 ~V~DLL~~~~~~-~~~i--~~~~~~~v~~Lt~~~V~S-~~E~~~lL~~g~~nR~~~~T~SS-RSH~IftI~V~~~n~~tg 354 (1191)
.++|||..++.+ ...+ ..+....+.+++.+.|.+ ++|+..++..+..- ..+ +.-.|+.+.+...+....
T Consensus 140 ~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~~gi~i~k~~~~~~~~~~~ 213 (298)
T 2o0a_A 140 FSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPHSGMGIIKVQFFPRDSKSD 213 (298)
T ss_dssp CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC-------------CEEEEEEEEEEESCC---
T ss_pred chHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCCCCceEEEEEEecCccccc
Confidence 999999744433 2222 234445677888999999 77776665211111 111 235566666666432211
Q ss_pred c---eeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceE
Q 001007 355 E---NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTL 431 (1191)
Q Consensus 355 ~---~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1191)
+ ...--++|+.+.-.. +...|.+.+ ..+ -+-.|+++-+|+..|- ..|-+
T Consensus 214 ~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~~~---~~~----~~~~spi~~il~~ll~-~tks~ 265 (298)
T 2o0a_A 214 GNNDPVPVDFYFIELNNLK--------------------SIEQFDKSI---FKK----ESCETPIALVLKKLIS-DTKSF 265 (298)
T ss_dssp ----CCCEEEEEEEECSHH--------------------HHHHHHHHH---HTC-----CCCSHHHHHHHHHHH-HSBCE
T ss_pred ccCCCCceEEEEEEeCCHH--------------------HHHHHHhhc---ccc----cccCCcHHHHHHHHHh-cCcce
Confidence 1 123456777553221 122233322 122 3456888888887663 47889
Q ss_pred EEEEeCCCCCCHHHHHHHhHHHHHHhhccc
Q 001007 432 MIVNICPNAANMSETLSSLNFSSRARSTVL 461 (1191)
Q Consensus 432 MIv~ISPs~~~~eETLsTLrFAsRAr~I~~ 461 (1191)
+++++.-...+ -.-|..++++..+.+
T Consensus 266 ~~~~l~~~~~~----~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 266 FLLNLNDSKNV----NKLLTISEEVQTQLC 291 (298)
T ss_dssp EEEEECCGGGH----HHHHHHHHHHHHHTC
T ss_pred EEEEecCCCch----hHHHHHHHHhhcccC
Confidence 99999764322 226777777766544
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.91 E-value=8.4e-26 Score=214.28 Aligned_cols=80 Identities=38% Similarity=0.555 Sum_probs=75.4
Q ss_pred HHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001007 386 LHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1191)
Q Consensus 386 ~~INkSLsaLg~VIsALa~k-k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~ 464 (1191)
.+||+||++||+||.+|+.+ +.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|.+.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 46999999999999999986 68999999999999999999999999999999999999999999999999999987654
Q ss_pred c
Q 001007 465 N 465 (1191)
Q Consensus 465 n 465 (1191)
.
T Consensus 82 ~ 82 (100)
T 2kin_B 82 V 82 (100)
T ss_dssp C
T ss_pred e
Confidence 3
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.91 E-value=6.4e-25 Score=213.78 Aligned_cols=77 Identities=40% Similarity=0.595 Sum_probs=72.8
Q ss_pred hhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhcccccCc
Q 001007 389 MKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 465 (1191)
Q Consensus 389 NkSLsaLg~VIsALa~k-k~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~~n 465 (1191)
|+||++||+||.+|+++ +.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|++.+..
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~ 78 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSV 78 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCcee
Confidence 89999999999999986 479999999999999999999999999999999999999999999999999999876543
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.6e-05 Score=85.73 Aligned_cols=140 Identities=15% Similarity=0.241 Sum_probs=96.2
Q ss_pred hcChhHHHHhhhhhhcccCCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCC--Chh
Q 001007 124 RISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV--GQA 201 (1191)
Q Consensus 124 r~~~~~~eRrkLhN~l~elkGnIRV~~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~a--sQe 201 (1191)
++..+...||+|-|.+.|+||.||+|.=+-+-..++ ...|.+.+. +|. +. ...+.|.|++|++... .+.
T Consensus 39 KmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~~p~-~~~idY~~~-~It-~~------~~~~~y~FnRiIp~~~~~e~~ 109 (333)
T 4etp_B 39 TVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPE-NLLFDYENG-VIT-QG------LSEHVYKFNRVIPHLKVSEDC 109 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSCCS-SCEEETTTT-EEE-C--------CCCEEECSEEEETTTCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHhcCcEEEEEEECcccCCc-cEEEecccc-eEe-ec------CCcceEEEeeeechhhcchHH
Confidence 344456779999999999999999999887732222 233444443 343 11 1348999999998776 677
Q ss_pred hHHhchHHhHhhhc-CCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccC-cccccccceeEEEEEEech
Q 001007 202 ELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD-TTATARFNFAVTVFELYNE 279 (1191)
Q Consensus 202 eVFeeV~PLV~svL-dGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~-~~~~~~f~V~VS~lEIYNE 279 (1191)
.+|++....++-|+ .+.|+.||..|+.- .+- .-..|+..+... .--.+.|.+.+.|+.+-++
T Consensus 110 ~l~qE~q~y~DmcL~~~~NfslIsis~~~-------------w~~---Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~ 173 (333)
T 4etp_B 110 FFTQEYSVYHDMALNQKKNFNLISLSTTP-------------HGS---LRESLIKFLAEKDTIYQKQYVITLQFVFLSDD 173 (333)
T ss_dssp HHHHTTHHHHHHHHHTTCCEEEEEEESSC-------------CCH---HHHHHHHHHHSTTCHHHHHEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHccCCCeeEEEecCCC-------------cHH---HHHHHHHHHHhcccccccceEEEEEEEEEcCC
Confidence 78889999999999 89999999988641 111 223333333211 0014688999999888777
Q ss_pred h-hhcccCCC
Q 001007 280 Q-LRELLPQT 288 (1191)
Q Consensus 280 ~-V~DLL~~~ 288 (1191)
. ..|||.+.
T Consensus 174 ~~S~DlL~~~ 183 (333)
T 4etp_B 174 EFSQDMLLDY 183 (333)
T ss_dssp SCCEESSCC-
T ss_pred Cchhhhhccc
Confidence 6 69999775
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.57 E-value=0.033 Score=66.27 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=14.6
Q ss_pred EEEeCCCCCCHHHHHHHhHHHHHHhh
Q 001007 433 IVNICPNAANMSETLSSLNFSSRARS 458 (1191)
Q Consensus 433 Iv~ISPs~~~~eETLsTLrFAsRAr~ 458 (1191)
+||-.+........+..+.....+..
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~~ 416 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVEK 416 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCccchhHHHHHhhHHHHhhc
Confidence 55656555555656666655554443
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.52 E-value=0.2 Score=54.39 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccC
Q 001007 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTT 620 (1191)
Q Consensus 541 ~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~e~r~~~r~e~~~~~~s~~~~~ 620 (1191)
..++..+..+..+++.+.++....+..+..+...+..+..++.++..++.+++.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~-------------------------- 150 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN-------------------------- 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 344444455555555555555555554555555555555555555555444422
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001007 621 GDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1191)
Q Consensus 621 ~~~~d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~ 660 (1191)
....+...+..-.++++.....+-....+.|+++-.
T Consensus 151 ----~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 151 ----EVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 223344455555566666666667777788888864
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.06 E-value=0.94 Score=49.20 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 631 KKLEEELKKRDALIERLHEENEKLFDR 657 (1191)
Q Consensus 631 kKLEEeLkkrd~~ieqL~eEneKL~~r 657 (1191)
..+++++...+..++.+..+-+.+...
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~ 172 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEK 172 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444444443
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.95 E-value=0.17 Score=59.75 Aligned_cols=98 Identities=9% Similarity=0.117 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLl 561 (1191)
....+...|++|+.+++.+.+.-.....-...+.+++++......++.+...+-...|+.++..++++++..-.++..|+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888887776555555544444555554444444444443333333555555555555555545555565
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIK 579 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe 579 (1191)
..++++..+|+.+|-.|.
T Consensus 138 snLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665554
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.93 E-value=0.42 Score=50.27 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=20.0
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 468 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 468 tikk~k~i~~~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
.+..|+..+......+..++.++.+.+..-..|+.+|
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL 47 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAEL 47 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555555555555444444443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.57 E-value=0.061 Score=64.03 Aligned_cols=51 Identities=8% Similarity=0.194 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 542 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 542 k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
..+..+++.++++++..++.+..++++.++.+..++++.++.++.+++.++
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444445555555555555555555555555555555554333
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.25 E-value=0.05 Score=70.80 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHhhccCcccc-cccceeEEEEEEechhhhc
Q 001007 244 GLYARCFEELFDLSNSDTTAT-ARFNFAVTVFELYNEQLRE 283 (1191)
Q Consensus 244 GIIPRale~LF~~i~~~~~~~-~~f~V~VS~lEIYNE~V~D 283 (1191)
+|+.|.+..|...++..-... ......|.++.||+=.+++
T Consensus 432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE 472 (1184)
T ss_dssp HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence 567777777777776432222 2345677888888544433
No 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.13 E-value=0.074 Score=69.23 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.6
Q ss_pred CCcceE
Q 001007 426 ESSKTL 431 (1191)
Q Consensus 426 GNSKTl 431 (1191)
|.++++
T Consensus 769 G~TKVF 774 (1184)
T 1i84_S 769 GQSKIF 774 (1184)
T ss_dssp CSSEEE
T ss_pred cCeEEE
Confidence 444444
No 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.54 E-value=3.4 Score=40.62 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYML---ADKHKIEKEQNAQLRNQVAQLLQLE 564 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l---~~k~k~~kE~~~qL~~ql~qLlq~e 564 (1191)
.++..+..++..|+..+.........+.............++..|..+...+ ......+.....++..++..+....
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444443333333333322222222233333343333332 2344445555666667777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
++.......+...-..++.++..|+.++..
T Consensus 93 eeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 93 EDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666644
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.52 E-value=0.0088 Score=60.01 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=40.6
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+.++||.....+..|..+++.+..++.++--.....++-||++|||||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 4578998777667799999888888887654334456779999999999883
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.75 E-value=3 Score=59.46 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=14.1
Q ss_pred HHhhHHHHHhhCcccccc--------CchhHHHHHHHHHHHHHHHHhhcccceee
Q 001007 1105 MLTSLDELAERMPSLLDI--------DHPCAQRQIADARRMVEVLQQMRSDVALL 1151 (1191)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1151 (1191)
+..-++++.+++|..++. ..|-.-=...+..++-+.|..||++..=|
T Consensus 2981 v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L 3035 (3245)
T 3vkg_A 2981 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANL 3035 (3245)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666677777888876642 12322222345566666667777765433
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.62 E-value=6.7 Score=41.28 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 001007 640 RDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 640 rd~~ieqL~eEneKL~~rl~~k 661 (1191)
+...+++|+.|...|.+.+..+
T Consensus 159 l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 159 LLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777776544
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.60 E-value=1.4 Score=56.95 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhc
Q 001007 244 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283 (1191)
Q Consensus 244 GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~D 283 (1191)
+|..|.+..|...++..-.........|.++.||+=++++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 6677777777776653222222235678888888554443
No 46
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.16 E-value=1.6 Score=56.55 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 576 STIKTLQAKINSIESQR 592 (1191)
Q Consensus 576 ~eIe~Lq~eIeeLE~qL 592 (1191)
+++..|++++..|+.|+
T Consensus 1023 ~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.13 E-value=3.2 Score=59.19 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qEl 518 (1191)
+...++.+|+.++..++..|++...++..+.+++
T Consensus 1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777776666655555444443
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.08 E-value=0.032 Score=56.73 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=38.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCcc-EEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN-VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN-~~IfAYGQTGSGKTyTM 236 (1191)
..++||.+...+..+..+++.+..++...-.++. ..|+-||++|+||||.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4567888776666777788877777776544432 57888999999999987
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.46 E-value=10 Score=39.28 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 535 ENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 535 e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
....++.+...+......+...+..+....++.+....+..+.|..|+.++..|..++
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El 106 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEV 106 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=92.42 E-value=11 Score=43.41 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL 563 (1191)
Q Consensus 484 ~~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~ 563 (1191)
......|.+|+.++..+++.-.....-...+.+.+.+..+.....+....+-...|+.++..++++++..-..+..|+..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35566777777777777666555544444444444444444444444444444555555555555554444455555555
Q ss_pred HHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTI 578 (1191)
Q Consensus 564 eeElk~qlqq~e~eI 578 (1191)
++++..+|+.++..|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566666665555
No 51
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.77 E-value=0.084 Score=58.51 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=37.0
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.++||.+......+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 467887655444666777766677776655545567889999999999984
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.83 E-value=1.3 Score=51.89 Aligned_cols=50 Identities=28% Similarity=0.461 Sum_probs=30.4
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
.-+||.|-|-+.--+++.+.| .|+-.. .+. | ..-.|+-||+.|+|||++.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 467788777655444555444 343221 121 2 2345889999999999776
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.45 E-value=15 Score=34.86 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 539 l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
++.++.......+....++.......++........+.++..|+++|+.|+
T Consensus 49 L~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 49 LEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444445555556666666666556666666777888889999988776
No 54
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.08 E-value=0.57 Score=54.90 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=32.9
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC--C--ccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PLV~-svLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
..-+||.|-+-+..-+++.+.| .|+.. ..+. | +.-.|+-||+.|+|||++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 3457888888766556666654 45542 1222 2 2345778999999999765
No 55
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.27 E-value=1.2 Score=51.76 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=30.8
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
.-+||.|-|-+..-+++.+.| -|+... .+. | ..-.|+-||+.|+|||++.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356777777655555555554 454322 222 2 2345888999999999764
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.55 E-value=7.6 Score=46.22 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
+|+.++..|..+.+.+-.+|+.++.-|+.+..+|+.||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444445555555555555555555554
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.44 E-value=4.9 Score=46.78 Aligned_cols=34 Identities=9% Similarity=-0.126 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
+..+....++++..++.+.++..+.++..++.++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3344445555555556666666666666555443
No 58
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.43 E-value=22 Score=33.48 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 539 l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+..+++......+....++.......++........+.++..|+++|+.++
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444555555556666555555555666777888888888887765
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.78 E-value=31 Score=40.00 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~ 597 (1191)
++.++++-...+..++.+..++.+.+..+..+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3333344444444455555555555544444333
No 60
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.44 E-value=32 Score=33.67 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
..++..+..++.+......++...-...+.++..|+..|.+++..
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444455555667777777777777643
No 61
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=84.28 E-value=21 Score=41.91 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 564 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~e 564 (1191)
.....|.+|+..+..+.+.-.....-...+.+.+.+..+.....+....+-...|+.++.-++++++..-..+..|+..+
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l 141 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665544333333333333333333333333333333333344444444444333333333333333
Q ss_pred HHHHHHHHHHH
Q 001007 565 QEQKMQIQQRD 575 (1191)
Q Consensus 565 eElk~qlqq~e 575 (1191)
+++..+|+.+|
T Consensus 142 ~~q~skIQRLE 152 (491)
T 1m1j_A 142 QEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=83.99 E-value=32 Score=40.74 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 569 MQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 569 ~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
..+..++..++.++.+|..|+..+..
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666665544
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.81 E-value=0.39 Score=48.96 Aligned_cols=45 Identities=24% Similarity=0.444 Sum_probs=28.9
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
++||.+++. ..+..++..+..++.. +....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHH
Confidence 567766552 3345566555444432 34556888999999999987
No 64
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.33 E-value=0.27 Score=52.16 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=22.0
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 47899887754433333333 333322 2356778999999999876
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.25 E-value=20 Score=35.85 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+++..+...+.......++.+.++..+..++..|+.++..|+.+++.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555455555556666666677777777777766654
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.94 E-value=0.53 Score=52.04 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=32.1
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccE--EEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV--SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~--~IfAYGQTGSGKTyTM 236 (1191)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 455777666 555555555555555566543 7888999999999887
No 67
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=81.64 E-value=19 Score=43.81 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 528 LQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL-----EQEQ-KMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 528 Lq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~-----eeEl-k~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
+++.++.....+++.++.+.+++++.+.++.+-.+. .+++ +..-+.++.++..++++|+.|+.+
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555444444444333322221 2221 122234466777777777777755
No 68
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.23 E-value=0.58 Score=51.19 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=31.0
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..|+||.++.. ..+...+..+..++..--. ....++-||++|+|||+.+
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~~~~~~~~~~~-~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEVVKEALENLGS-LYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHHHHHHHHTTTT-SCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHHHHHHHhCcCC-CCCeEEEECCCCCcHHHHH
Confidence 46889887632 2344555555445444211 2345778999999999988
No 69
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.61 E-value=33 Score=33.54 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 001007 573 QRDSTIKTLQA 583 (1191)
Q Consensus 573 q~e~eIe~Lq~ 583 (1191)
.++-+|..|++
T Consensus 114 ~Ld~EIatYRk 124 (129)
T 3tnu_B 114 ALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 70
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.58 E-value=21 Score=35.07 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAK 584 (1191)
Q Consensus 573 q~e~eIe~Lq~e 584 (1191)
.++-+|..|++-
T Consensus 116 ~Ld~EIatYRkL 127 (131)
T 3tnu_A 116 RLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345566666543
No 71
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=79.50 E-value=2.1 Score=47.30 Aligned_cols=128 Identities=16% Similarity=0.285 Sum_probs=70.9
Q ss_pred hhhhcccCCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCC--CChhhHHhchHHhHh
Q 001007 135 LFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH--VGQAELFSDVQPFVQ 212 (1191)
Q Consensus 135 LhN~l~elkGnIRV~~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~--asQeeVFeeV~PLV~ 212 (1191)
|-|.+-|+||.||.|.=+-+-.-++ ...|.+.+.+ |. +. ...+.|.|++|.+.. ..++-+|++.++..+
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~-~~~IdY~~~t-I~--~~-----~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~D 74 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISE-KLIVNYSDES-IE--DM-----KNHKTYKFTKLIQNFSHQNKDLFKEDLHVYID 74 (275)
T ss_dssp ------------CEEEEEETTTSCT-TEEEETTTTE-EE--ET-----TTTEEEECSEEEEECSSSCCCGGGTHHHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccCCc-cEEEecccce-ec--cC-----CCccEEEEEeeeccccCCHHHHHHHHHHHHHH
Confidence 5699999999999999884422111 2345555443 33 11 234889999998654 345667778999999
Q ss_pred hhc-CCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechh-hhcccCCCC
Q 001007 213 SAL-DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ-LRELLPQTG 289 (1191)
Q Consensus 213 svL-dGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~-V~DLL~~~~ 289 (1191)
-|+ .+.|+.+|+.++.-- .-+--..+..+... -...|.+.+.++=+-.+. --|||....
T Consensus 75 mCL~k~~NfnlISiS~~~~------------~~lr~~ll~f~~~~------y~~~y~itlQ~V~Ls~~~~S~Dll~~~~ 135 (275)
T 4gkp_A 75 FCLKRRENFNLFSVGSSNI------------PNTFEKLLAFFKNN------YFDKFVITLQYVMLSDNADSQDLLSNNK 135 (275)
T ss_dssp HHHHTTCCEEEEEECCSSC------------CSHHHHHHHHHHHH------TTTTEEEEEEEEEEC----CEETTCC--
T ss_pred HHhccCCCceEEEecCCCc------------HHHHHHHHHHHHHh------ccccceEEEEEEEecCCCcccccccCCc
Confidence 998 789999999876431 23444555555542 234577888887775444 458875443
No 72
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.31 E-value=5.1 Score=48.48 Aligned_cols=109 Identities=16% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 486 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTL---QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 562 (1191)
Q Consensus 486 le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElqk~~k~~~eL---q~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq 562 (1191)
++..+.++++|....+..|...++....+.++.+........| ..+++.++..+........++...+..++.+...
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 419 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQE 419 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443433333222222222 2223333333433333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 563 LEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 563 ~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
....+..+...++.+...++.++...+..+.+
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~ 451 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDARRKQDE 451 (575)
T ss_dssp ----------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666666666665554443
No 73
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=78.82 E-value=13 Score=35.71 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 528 LQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 528 Lq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
....|.++...+.=.++.++..++++.+.+.++.....+....+....-.+..|+.++..++.+|++
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566777888888888888888777777777888888888899999888887753
No 74
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.43 E-value=0.69 Score=45.81 Aligned_cols=43 Identities=28% Similarity=0.491 Sum_probs=25.6
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
..|+||.-+. . .+.+.+..+..+ .|. .++-||++|+||||.+.
T Consensus 12 ~~~~~~~f~~-g-~n~~~~~~l~~~-----~g~--~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 12 DYPSFDKFLG-T-ENAELVYVLRHK-----HGQ--FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCCCCCCCCS-C-CTHHHHHHCCCC-----CCS--EEEEESSSTTTTCHHHH
T ss_pred CccchhhcCc-C-ccHHHHHHHHhc-----CCC--EEEEECCCCCCHHHHHH
Confidence 3466665443 3 333444433332 454 45669999999999983
No 75
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=78.02 E-value=0.81 Score=44.41 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 33444444465667888999999999987
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.84 E-value=0.73 Score=50.58 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=30.1
Q ss_pred ceeeCCCCChhhHHhchHHhHhhhcC-CccEEEEeeccCCCCccccc
Q 001007 191 DRVYGPHVGQAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 191 D~VF~p~asQeeVFeeV~PLV~svLd-GyN~~IfAYGQTGSGKTyTM 236 (1191)
+.+++.-..++...+.+...+..++. +...+++-||++|+|||+++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333334456666666555555543 44557889999999999987
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.70 E-value=26 Score=35.69 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 551 ~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
..++..+..+..+..+++..+......++.++.++..|..++
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555555555555444
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.36 E-value=71 Score=33.07 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE 589 (1191)
++.+.+..|+++...++
T Consensus 122 ~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 122 EAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33333333333333333
No 79
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.28 E-value=0.72 Score=49.15 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=30.8
Q ss_pred ceeecceeeCCCCChhhHHhch-HHh-----HhhhcCCccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPF-----VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PL-----V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..++|+.+.+.+..-+.+.+.+ .++ ....--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4578898887655444444433 121 11111123445888999999999876
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.23 E-value=0.84 Score=48.08 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=29.2
Q ss_pred ceeecceeeCCCCChhhHHhchH-----HhHhhh-cCCccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQ-----PFVQSA-LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~-----PLV~sv-LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..++||.|.+.+....++.+-+. +.+..+ +.-..+ |+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHH
Confidence 46789998876543333332211 122222 111122 889999999999987
No 81
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.19 E-value=0.77 Score=48.59 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=32.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHh-----HhhhcCCccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPF-----VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PL-----V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+.|+.+.+.+...+.+.+.+..+ ...+-......|+-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4578899998877666665543321 11111122334888999999999987
No 82
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.06 E-value=0.95 Score=48.26 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=18.4
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999976
No 83
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.78 E-value=70 Score=32.68 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
.+..+++.++...+..+..++.++..|+.-
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777788888777743
No 84
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.71 E-value=65 Score=38.19 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 569 MQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 569 ~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
..+..+..+|+.|+..+..+.
T Consensus 175 ~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666665544
No 85
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=76.32 E-value=52 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
....+.++.+++.+...+..++.-...+|.+.
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555666666666666666666543
No 86
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=76.15 E-value=48 Score=39.15 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 484 YEREKEIQDLKQEILGLRQALKEAND 509 (1191)
Q Consensus 484 ~~le~eI~~Lk~Ei~~Lk~~L~~~~~ 509 (1191)
...+..|++|+..+.++.+.-..+.+
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 34455666666666666555444433
No 87
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.17 E-value=1.2 Score=51.80 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=30.7
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCcccccc
Q 001007 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 185 ~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdG-yN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..|+||...... ++...+..+..++.. .| +| .++-||++|+||||.+.
T Consensus 99 ~~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~-~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 99 NPDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYN-PLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CTTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSC-CEEEECSSSSSHHHHHH
T ss_pred CCCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCC-eEEEECCCCCCHHHHHH
Confidence 3568898855322 333455444444443 23 44 57789999999999983
No 88
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=75.13 E-value=1.2 Score=51.76 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=32.1
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCcc--EEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN--~~IfAYGQTGSGKTyTM 236 (1191)
.+.||.|.+ |+++.+.+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456777765 66676666666666655543 35677999999999876
No 89
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.97 E-value=0.91 Score=44.19 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=21.1
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 33444444455667889999999999987
No 90
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.87 E-value=30 Score=31.87 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 573 q~e~eIe~Lq~eIeeLE~qL 592 (1191)
.++.+++.|+.+....+..+
T Consensus 52 ~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 52 ELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 91
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.76 E-value=1.4 Score=46.40 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=29.7
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHh-hhcC----CccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~-svLd----GyN~~IfAYGQTGSGKTyTM 236 (1191)
..+.|+.+.+.+..-+.+.+.+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 457788888765444444332222111 0111 12345889999999999887
No 92
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.02 E-value=1.3 Score=48.43 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=26.2
Q ss_pred cceeeCCCCChhhHHhch-HHhHhhhcC--Cc--cEEEEeeccCCCCccccc
Q 001007 190 FDRVYGPHVGQAELFSDV-QPFVQSALD--GY--NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 190 FD~VF~p~asQeeVFeeV-~PLV~svLd--Gy--N~~IfAYGQTGSGKTyTM 236 (1191)
||.+|+..---..+.+.+ ..++.+.+. |. ...|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 444444332223333332 455555543 22 235777999999999876
No 93
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=73.48 E-value=0.94 Score=50.91 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=23.0
Q ss_pred hHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001007 207 VQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 207 V~PLV~svL-dGyN~~IfAYGQTGSGKTyTM 236 (1191)
+...+..++ .|...+++-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 434444444 677889999999999999887
No 94
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.56 E-value=0.99 Score=49.28 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=28.5
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..|+|+.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 568899988743 33322 222233333445889999999999876
No 95
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.39 E-value=76 Score=31.05 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 001007 640 RDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 640 rd~~ieqL~eEneKL~~rl~~k 661 (1191)
....+|+|..+|.-+-.++.++
T Consensus 90 a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 90 ASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhchhhhhHhhhc
Confidence 3345666667777777776655
No 96
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.73 E-value=1.9 Score=46.30 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=28.8
Q ss_pred ceeecceeeCCCCChhhHHhchH-----HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQ-----PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~-----PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..++||.|.+.+....++.+-+. +.+..+---....|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 46788888776543333332211 1122211011122889999999999987
No 97
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.37 E-value=1.3 Score=48.27 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=29.9
Q ss_pred eeecceeeCCCCChhhHHhch-HHhH-----hhhcCCccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFV-----QSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV-----~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++||.|.+.+..-+.+.+.+ .|+. .+.--.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 467888877555444444443 2321 1111123446788999999999876
No 98
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.31 E-value=47 Score=38.74 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQALKEAND 509 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L~~~~~ 509 (1191)
....+..|++|+..+..+.+.-..+.+
T Consensus 33 e~~V~~~l~~L~~~l~~isn~Ts~~~~ 59 (411)
T 3ghg_C 33 QTKVDKDLQSLEDILHQVENKTSEVKQ 59 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhhHHHH
Confidence 334556667777777666655444433
No 99
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.17 E-value=83 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEAN 508 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~ 508 (1191)
.+......|..|+..++..+....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666655443
No 100
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=69.76 E-value=1.7 Score=44.46 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34556678877 577899999999873
No 101
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.38 E-value=1.6 Score=47.68 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=24.0
Q ss_pred hhhHHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svL-dGyN~~IfAYGQTGSGKTyTM 236 (1191)
++...+.+...+..++ .+...+++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 4444444444444443 234557888999999999887
No 102
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.01 E-value=1.9 Score=43.37 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4455667877 466789999999764
No 103
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.89 E-value=1.5 Score=48.37 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.5
Q ss_pred ChhhHHhchHHhHhhhcCCcc-E--EEEeeccCCCCccccc
Q 001007 199 GQAELFSDVQPFVQSALDGYN-V--SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN-~--~IfAYGQTGSGKTyTM 236 (1191)
.++...+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 355555556556666554432 3 6888999999999987
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.64 E-value=1.9 Score=47.54 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=27.0
Q ss_pred ChhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCccccc
Q 001007 199 GQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdGy-N~~IfAYGQTGSGKTyTM 236 (1191)
.++...+.+...+..++.|. ..+|+-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 35555666655666655443 458999999999999876
No 105
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.45 E-value=2.2 Score=45.88 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=16.3
Q ss_pred CccEEEEeeccCCCCccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM 236 (1191)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446888999999999976
No 106
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.26 E-value=2.4 Score=44.23 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.0
Q ss_pred ccEEEEeeccCCCCccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1191)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456889999999999987
No 107
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.24 E-value=1.9 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 3455677877 456789999999874
No 108
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.42 E-value=77 Score=36.59 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=22.8
Q ss_pred HHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 526 FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQI 571 (1191)
Q Consensus 526 ~eLq~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~ql 571 (1191)
.++-.+|++....|+.++...-..+..|+..+.++..+++.++..|
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444455555555555444444444433
No 109
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.40 E-value=49 Score=32.44 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
+.+..|..|+.|+..|+..+...
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENM 34 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887777654
No 110
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.35 E-value=1.7 Score=46.62 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=31.2
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcCC---ccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDG---YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PLV~-svLdG---yN~~IfAYGQTGSGKTyTM 236 (1191)
....|+.+.+.+..-..+.+.+ .|+.. ..+.| ....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4567888887554444444433 33321 12222 3457888999999999876
No 111
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.13 E-value=1.9 Score=47.52 Aligned_cols=42 Identities=38% Similarity=0.675 Sum_probs=26.7
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.|+.+++ |..+.+.+...|. .|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 3566664 5556555544443 3532226779999999999883
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.03 E-value=2 Score=42.69 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=21.9
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+.++.+.+...+.. +....++-||++|+|||+.+
T Consensus 22 ~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVER---KNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHHT---TCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHH
Confidence 44444444444432 33334899999999999886
No 113
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.58 E-value=35 Score=30.89 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
.+......+.++++..|+++|..++.++
T Consensus 30 ~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 30 KAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555444
No 114
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.24 E-value=63 Score=31.29 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 489 EIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1191)
Q Consensus 489 eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qEl 518 (1191)
+|..|+..+...++.|.....+|..+..++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444444444433
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.15 E-value=13 Score=43.48 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=29.9
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
..+||.|-|-+..-+++.+.| -|+-.. .+. | ..-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 456777777554444444443 344321 222 2 2345888999999999875
No 116
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.00 E-value=41 Score=33.58 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
++...+..+.+.....+.++.....++..|+.++++|+.++
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444333
No 117
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.88 E-value=2.4 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=20.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556678887 577889999999874
No 118
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=64.70 E-value=1.6 Score=45.54 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.1
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 44556678887 567899999999874
No 119
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.09 E-value=2 Score=48.27 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=28.7
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhhh----cCCccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQSA----LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~sv----LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
...||.+.+.+..-..+.+.+ .|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 356777776433333333333 2322111 1234557888999999999877
No 120
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=62.97 E-value=2.8 Score=48.70 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=22.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+++..++......|.-.|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555555566788999999999999983
No 121
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.38 E-value=2.9 Score=43.30 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..+++|.|+ +..++||||||.+.
T Consensus 55 ~i~~~~~~~~~--li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKDV--LGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCCcHHHHH
Confidence 34556788874 56689999999874
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.18 E-value=1.4e+02 Score=34.30 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINS 587 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIee 587 (1191)
+|++.++..++.+|+.++.++++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.87 E-value=1.2e+02 Score=34.84 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+++++.+|..|+.+|++++.++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555544
No 124
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.55 E-value=4.1 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=23.2
Q ss_pred HhchHHhH-hhhcCC---ccEEEEe--eccCCCCccccc
Q 001007 204 FSDVQPFV-QSALDG---YNVSIFA--YGQTHSGKTHTM 236 (1191)
Q Consensus 204 FeeV~PLV-~svLdG---yN~~IfA--YGQTGSGKTyTM 236 (1191)
.+.+...+ ..+..| ...+++- ||+.|+|||+.+
T Consensus 31 l~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 31 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 33344455 555555 4567888 999999999987
No 125
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.19 E-value=3.1 Score=42.81 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=20.1
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 445667788876 66789999999875
No 126
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.12 E-value=85 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001007 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1191)
Q Consensus 625 d~s~lkkKLEEeLkkrd~~ieqL~eEneKL~~rl~~k 661 (1191)
......+.++.+++..+..++.+.++..++...|-..
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666666554
No 127
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.70 E-value=3 Score=42.52 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.1
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 34455677877 456679999999875
No 128
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.62 E-value=3.1 Score=40.32 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=20.2
Q ss_pred HhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 204 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 204 FeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
...+...+..+..+ +..|+-||.+|+|||+...
T Consensus 13 ~~~l~~~~~~~~~~-~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 13 IQEMNREVEAAAKR-TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHHHHTC-SSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHHHHhCC-CCcEEEECCCCccHHHHHH
Confidence 33343444443332 2346779999999998764
No 129
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.55 E-value=72 Score=31.03 Aligned_cols=81 Identities=7% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHhcChhHHHH
Q 001007 64 KVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVA-----------LEAEARISPLINEK 132 (1191)
Q Consensus 64 ~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~-----------~e~e~r~~~~~~eR 132 (1191)
.+.+|...+..++.+...++.+..++.++++.+-+.-...+..|.+++..-++.+ .++..++..+..-|
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554444444555544444333333 23444555566668
Q ss_pred hhhhhhcccCCC
Q 001007 133 KRLFNDLLTAKG 144 (1191)
Q Consensus 133 rkLhN~l~elkG 144 (1191)
+++...|..+.+
T Consensus 87 e~V~~eL~rLQ~ 98 (112)
T 1x79_B 87 EQVSEELVRLQK 98 (112)
T ss_dssp HHHHTC------
T ss_pred HHHHHHHHHHHh
Confidence 888777665543
No 130
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.32 E-value=56 Score=38.09 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 588 (1191)
Q Consensus 544 k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeL 588 (1191)
+.+.+++.+++..+......+..++..+...+.+|+.|+.++.+|
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444444443333333333333334444444444444444
No 131
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.28 E-value=1.1e+02 Score=28.31 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQA 503 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~ 503 (1191)
+...-..|.-|+.|+..||.+
T Consensus 15 Iq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 132
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.26 E-value=1.8 Score=43.48 Aligned_cols=23 Identities=48% Similarity=0.510 Sum_probs=17.4
Q ss_pred hhhcCCccEEEEeeccCCCCccccc
Q 001007 212 QSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 212 ~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+++|.| ++..++||||||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456766 456899999999986
No 133
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=59.77 E-value=3.2 Score=45.38 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=29.7
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhc--CCccEEEEeeccCCCCccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svL--dGyN~~IfAYGQTGSGKTyTM 236 (1191)
+|+.+.+ +..+...+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666655 5556665655555543 334456889999999999876
No 134
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.57 E-value=1e+02 Score=29.87 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 476 ANDARKELYEREKEIQDLKQEILGLRQA 503 (1191)
Q Consensus 476 ~~~l~~el~~le~eI~~Lk~Ei~~Lk~~ 503 (1191)
.++++.++.....+-..|.-|+..++..
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~ 49 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAED 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 135
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=59.53 E-value=1.4e+02 Score=35.47 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
..+.++...+.|+.+.+..-+.+
T Consensus 6 ~yq~~la~yq~elarvqkana~a 28 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADA 28 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665554443
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.43 E-value=2.9 Score=47.57 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=19.7
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+.+++.-....|.-.|+||||||.|+.
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 334443445578889999999999983
No 137
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.97 E-value=3.6 Score=43.13 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=19.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.|+ +..++||||||.+.
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345566788874 55679999999875
No 138
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.61 E-value=1.3e+02 Score=28.67 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 478 DARKELYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 478 ~l~~el~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
.++.++..++.+......|+..|...+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333444444444444444444444443
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=58.40 E-value=2.9 Score=46.35 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=29.3
Q ss_pred eecceeeCCCCChhhHHhch-HHhHh-hhcCCc---cEEEEeeccCCCCccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGY---NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV-~PLV~-svLdGy---N~~IfAYGQTGSGKTyTM 236 (1191)
.+||.|.+.+..-+.+.+.| .|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46788877544433444333 23321 334432 245788999999999877
No 140
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=58.10 E-value=2.4 Score=45.25 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=19.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++..++.|.| ++..++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 34555667877 577899999999874
No 141
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.63 E-value=1.5e+02 Score=29.05 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 001007 549 QNAQLRNQVAQL 560 (1191)
Q Consensus 549 ~~~qL~~ql~qL 560 (1191)
.+..++..+.++
T Consensus 85 ~i~~lE~eL~~~ 96 (131)
T 3tnu_A 85 MIGSVEEQLAQL 96 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 142
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.01 E-value=82 Score=29.09 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 569 MQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 569 ~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+++.....+..++.++.+++.-+.+
T Consensus 15 ~~~~~l~~q~~~l~~~~~e~~~~~~E 40 (107)
T 1fxk_A 15 QQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544433
No 143
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.95 E-value=1.9e+02 Score=34.22 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+-.++|+.++..+.+....+-..|..++.-|+.+..+|+.||.-+..
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666665555566777777788888888888775554
No 144
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=56.49 E-value=5.2 Score=42.84 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=26.1
Q ss_pred cceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 190 FDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 190 FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
|+.+.+ |+++.+.+..++.. |....++-||++|+|||++.
T Consensus 24 ~~~~~g----~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 24 LDDIVG----QEHIVKRLKHYVKT---GSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp TTTCCS----CHHHHHHHHHHHHH---TCCCEEEEESCTTSSHHHHH
T ss_pred HHHhhC----CHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHH
Confidence 555443 56666555444443 44334888999999999987
No 145
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.25 E-value=4.3 Score=44.95 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=20.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667788988 577899999999874
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.22 E-value=4.7 Score=40.26 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999876
No 147
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.07 E-value=4.3 Score=42.04 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..+++|.|+ +..++||||||.+.
T Consensus 54 ~i~~~~~~~~~--l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 54 AIPLGRCGLDL--IVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCCcHHHHH
Confidence 44556788875 55679999999874
No 148
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.39 E-value=4 Score=44.69 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=20.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|..-.++++++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3456667773334678899999999874
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=55.35 E-value=3.9 Score=47.77 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=28.4
Q ss_pred cceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 190 FDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 190 FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
||.|++ |+.+.....++...+-.|.-..|+-||++|+|||+..
T Consensus 25 l~~ivG----q~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 25 LAQYIG----QQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTTCCS----CHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHhCC----cHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 455544 6677644344444444455567888999999999876
No 150
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.23 E-value=4.4 Score=42.84 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=19.2
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.|+ +..++||||||.+.
T Consensus 72 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 345566788775 55679999999874
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=55.15 E-value=4.6 Score=43.59 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=28.0
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhc--CCccEEEEeeccCCCCccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svL--dGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+|+.+.+. ..+...+..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~----~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 356666653 444444444444433 234456788999999999876
No 152
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.12 E-value=1.4e+02 Score=30.47 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 538 MLADKHKIEKEQNAQLRNQV 557 (1191)
Q Consensus 538 ~l~~k~k~~kE~~~qL~~ql 557 (1191)
.++.+....++++.+|-++.
T Consensus 114 ~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 114 VLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555544444
No 153
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=55.02 E-value=4.1 Score=42.56 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 44555566764 467899999999765
No 154
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=54.95 E-value=3.6 Score=46.44 Aligned_cols=51 Identities=22% Similarity=0.379 Sum_probs=30.1
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcCC---ccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDG---YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PLV~-svLdG---yN~~IfAYGQTGSGKTyTM 236 (1191)
..+.||.+.+.+..-+.+.+.+ .|+.. .++.+ ....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4577888888544333333333 23221 11122 2357888999999999876
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=54.80 E-value=3.8 Score=45.04 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=29.2
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcCCc---cEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGY---NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~-svLdGy---N~~IfAYGQTGSGKTyTM 236 (1191)
..+||.|.+.+..-+.+.+.+ .|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 456888877444333343333 23221 222222 346888999999999876
No 156
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=54.59 E-value=84 Score=29.75 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=49.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001007 48 SALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ--------EYSNAKIDRVTRYLGVLADKTRKLDQVAL 119 (1191)
Q Consensus 48 ~~~~~~~~~~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q--------~~~~~~l~~v~~~l~~L~~~~~~l~~~~~ 119 (1191)
|.+|+ |+.|+.|.++|..|..++.....+-..|..-..-+. .....++..+...+..|.....++...+.
T Consensus 9 s~LPp--eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 9 SHLPP--EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 688999999999999999977766444433221111 12345566777777777777777777777
Q ss_pred HHHH
Q 001007 120 EAEA 123 (1191)
Q Consensus 120 e~e~ 123 (1191)
|.+.
T Consensus 87 e~e~ 90 (98)
T 2ke4_A 87 EAES 90 (98)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 157
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=54.33 E-value=3e+02 Score=31.63 Aligned_cols=27 Identities=30% Similarity=0.182 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 482 ELYEREKEIQDLKQEILGLRQALKEAN 508 (1191)
Q Consensus 482 el~~le~eI~~Lk~Ei~~Lk~~L~~~~ 508 (1191)
+.+.+-.+.....+|++.-+.++.+.+
T Consensus 141 ~~~~~~~~~~~~~~e~~~k~~a~~af~ 167 (373)
T 3hhm_B 141 EYDRLYEEYTRTSQEIQMKRTAIEAFN 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 333444455555555555555544433
No 158
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=54.19 E-value=4.1 Score=42.54 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=17.7
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..+++|.|+ +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 4455678775 45579999999874
No 159
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.13 E-value=1.6e+02 Score=28.58 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001007 489 EIQDLKQEILGLRQALK 505 (1191)
Q Consensus 489 eI~~Lk~Ei~~Lk~~L~ 505 (1191)
+|.+|+..+..|+.++.
T Consensus 37 Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEID 53 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 160
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.06 E-value=4.7 Score=44.67 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=26.4
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhc-CC-ccEEEEeeccCCCCccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSAL-DG-YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svL-dG-yN~~IfAYGQTGSGKTyTM 236 (1191)
+|+.+|+ |..+.+.+.-.|.... .| ..-.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5677765 4555555544443321 12 1123566999999999987
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.01 E-value=4.5 Score=43.76 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=16.3
Q ss_pred ccEEEEeeccCCCCcccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM~ 237 (1191)
....+.-.|+||||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567788999999999983
No 162
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=53.82 E-value=1.4e+02 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCV 512 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~ 512 (1191)
.+..++..|+.+-..|...|...+.+..
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555555555555555544444333
No 163
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.77 E-value=58 Score=29.68 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 551 ~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
+.|-.++.++-....-++.++....+....++.++.+++.+++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555666677777777777777777776654
No 164
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.68 E-value=1.5e+02 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 490 IQDLKQEILGLRQALKEANDQCVLL 514 (1191)
Q Consensus 490 I~~Lk~Ei~~Lk~~L~~~~~q~~~l 514 (1191)
+..|++++..|+.++.....++..+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444445545544444444444333
No 165
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=53.22 E-value=84 Score=30.21 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~ 597 (1191)
.+.-++++......|+.+|.+|+++|.+...
T Consensus 73 NK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 73 NKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999976544
No 166
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.94 E-value=1.7e+02 Score=28.34 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 564 EQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 564 eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
.++....-.+++.+++.|+.+|.=|++
T Consensus 78 lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 78 VDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555555555543
No 167
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.90 E-value=45 Score=31.87 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
..++.++..++.++..|+.+++.||.+|..
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888899999999988844
No 168
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.57 E-value=5.5 Score=42.70 Aligned_cols=38 Identities=32% Similarity=0.299 Sum_probs=24.9
Q ss_pred ChhhHHhchHHhHhhhcCC------ccEEEEeeccCCCCccccc
Q 001007 199 GQAELFSDVQPFVQSALDG------YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdG------yN~~IfAYGQTGSGKTyTM 236 (1191)
.|..+.+.+...+.....| -...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 3556655554444444322 1357889999999999876
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=52.49 E-value=6 Score=43.01 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=26.1
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGy-N~~IfAYGQTGSGKTyTM 236 (1191)
+||.+.+ |+.+...+...+. .|. ...++-||++|+|||+++
T Consensus 24 ~~~~ivg----~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECIL----PAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSCC----CHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHhC----cHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 3555543 4555544444444 333 356788999999999987
No 170
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=52.34 E-value=1.4e+02 Score=27.32 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
+...++|+.--..+.....+++.+....+..|+.|+.+.++|+.
T Consensus 31 rrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 31 KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433334444444555555666677777777776663
No 171
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.99 E-value=1.1e+02 Score=28.15 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 554 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 554 ~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
++.+.-+....++....-..++.+++.|+.+|.=|+
T Consensus 48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 48 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444555556666666666665544
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=51.97 E-value=3.6 Score=43.90 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=25.0
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|+.+.+ |+.+.+.+...+. .|....++-||++|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 3555543 4444444333332 344334888999999999876
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.46 E-value=3.7 Score=44.69 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=18.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+...+..|....++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333344553333788999999999987
No 174
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=51.26 E-value=17 Score=43.21 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=16.8
Q ss_pred cCCccEEEEeeccCCCCcccccc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
-.|.+ |.-.|+||||||+||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 36776 5668999999999873
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=51.13 E-value=4.8 Score=45.19 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=28.7
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcCCc---cEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGY---NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~-svLdGy---N~~IfAYGQTGSGKTyTM 236 (1191)
..+|+.|.+.+..-..+.+.+ .|+-. ..+.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 456888877544433444333 23211 222221 235778999999999876
No 176
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=51.06 E-value=9.5 Score=41.65 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred hhHHhchHHhHhhhcCCc-----cEEEEeeccCCCCccccc
Q 001007 201 AELFSDVQPFVQSALDGY-----NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 201 eeVFeeV~PLV~svLdGy-----N~~IfAYGQTGSGKTyTM 236 (1191)
+++...+..++..++.|+ ...|+..|++|||||+..
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 444443444555555432 467889999999999865
No 177
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=50.96 E-value=5.3 Score=44.40 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 34556678888 566789999999764
No 178
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=50.93 E-value=3.3 Score=42.41 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=18.1
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34455677775 56789999999874
No 179
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.90 E-value=56 Score=29.51 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 567 QKMQIQQRDSTIKTLQAKIN 586 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIe 586 (1191)
++.++.+++.+|..|+.++.
T Consensus 45 LEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 180
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.45 E-value=1.5e+02 Score=27.57 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
++..+..++..++.++..++.+++
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555544443
No 181
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=50.45 E-value=5.6 Score=45.69 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=20.4
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.+..++..|+||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 445566775566788999999999773
No 182
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.04 E-value=66 Score=32.21 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 565 QEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 565 eElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
.+++.++.+.+.-+..++.++..|+.
T Consensus 106 ~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 106 KRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666553
No 183
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=49.69 E-value=2.3e+02 Score=28.94 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 489 EIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1191)
Q Consensus 489 eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qElq 519 (1191)
++..+..++.+-......++.++..+..++.
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~ 52 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELK 52 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333555555555555555555555555543
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=49.65 E-value=6.6 Score=38.01 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=15.5
Q ss_pred ccEEEEeeccCCCCccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1191)
.+..|+-||.+|+|||+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4455788999999999876
No 185
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.44 E-value=1.6e+02 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 487 EKEIQDLKQEILGLRQALKE 506 (1191)
Q Consensus 487 e~eI~~Lk~Ei~~Lk~~L~~ 506 (1191)
+.++..+..++..++..+..
T Consensus 13 eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665543
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.78 E-value=5.1 Score=43.90 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=24.7
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+||.+.+ |+.+.+.+...+...-.+.+ ++-||++|+|||+++
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSDQPRDLPH--LLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTTCTTCCCC--EEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHhhCCCCCe--EEEECCCCCCHHHHH
Confidence 4566554 55555444333311112233 777999999999987
No 187
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.51 E-value=5.8 Score=45.10 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=20.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.+..+.-.....|.-.|+||||||+++.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 3444433345578889999999999983
No 188
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=48.22 E-value=2.5e+02 Score=29.05 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 545 ~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
.++..+..+.+...+|.+.+.........++.++..|+-++-.|.+..+
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344444444444444444444444555667777777777766665444
No 189
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.10 E-value=6.7 Score=41.39 Aligned_cols=25 Identities=28% Similarity=0.085 Sum_probs=18.1
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++++.+ ++.+|+||+|||++..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 344566666 5567899999999863
No 190
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.06 E-value=43 Score=30.25 Aligned_cols=30 Identities=7% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 566 EQKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 566 Elk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
.....+..++..+..+..+|..|+.+|++.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777777777777777777777654
No 191
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=47.95 E-value=5.8 Score=43.75 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=20.3
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3455667774445677899999999874
No 192
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.79 E-value=7.4 Score=42.82 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHhHhhhcCCc---cEEEEeeccCCCCccccc
Q 001007 208 QPFVQSALDGY---NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 208 ~PLV~svLdGy---N~~IfAYGQTGSGKTyTM 236 (1191)
...+..+++|. .-||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 45577778876 447999999999999876
No 193
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.75 E-value=6.5 Score=41.97 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=17.7
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..+++|.++ +..++||||||.+.
T Consensus 25 i~~i~~~~~~--lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKNV--VVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHhcCCCE--EEEcCCCCcHHHHH
Confidence 3445678764 56689999999875
No 194
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.49 E-value=89 Score=36.42 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1191)
Q Consensus 549 ~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~ 596 (1191)
...++.+++.++.........++..++..+..++.+|..|+.++.+..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444455555444455556677777777777777777777665543
No 195
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=47.34 E-value=5.9 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.9
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345556773344577889999999864
No 196
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=47.26 E-value=8.7 Score=42.10 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=23.4
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|+.+.+.+...+.. ......++-||+.|+|||+++
T Consensus 20 g~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 20 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 355555555444432 122346788999999999887
No 197
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.24 E-value=1.7e+02 Score=27.34 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001007 574 RDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 574 ~e~eIe~Lq~eIeeLE~q 591 (1191)
++.++..++..+..++.+
T Consensus 75 l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 75 VEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455555555555543
No 198
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=46.74 E-value=89 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s~ 599 (1191)
.+.-++++...+..|+.+|.+|+++|.......
T Consensus 60 NK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 60 NKRTLTDREGVAVSIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778899999999999999999998866644
No 199
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.63 E-value=1.8e+02 Score=27.02 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAK 584 (1191)
Q Consensus 549 ~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~e 584 (1191)
.+.+++.++..+......+..++..+...+..++.+
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555444444445555555555555544
No 200
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=46.44 E-value=1.1e+02 Score=28.12 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~ 597 (1191)
.+.-++++......|+.+|.+|+++|.+...
T Consensus 43 NK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 43 NKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999976544
No 201
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.43 E-value=1.9e+02 Score=27.16 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 495 QEILGLRQALKEANDQCVLLYNEV 518 (1191)
Q Consensus 495 ~Ei~~Lk~~L~~~~~q~~~l~qEl 518 (1191)
+....++..++..+..+.....++
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei 46 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDI 46 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333444443333333333333
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=45.70 E-value=5.2 Score=46.43 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=28.4
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcCC---ccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDG---YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PLV~-svLdG---yN~~IfAYGQTGSGKTyTM 236 (1191)
...+|+.|.+.+..-..+.+.+ .|+-. .++.| ....|+-||++|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4567888877433222222222 22211 22333 2246788999999999887
No 203
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=45.56 E-value=7.2 Score=43.26 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=19.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.|+ +..++||||||.+.
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 45556788885 56789999999865
No 204
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.47 E-value=2.2e+02 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEANDQC 511 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~~~q~ 511 (1191)
+.+.+|+..+..|+.+......+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 205
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=45.33 E-value=6 Score=43.74 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=19.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 34455667877 566789999999764
No 206
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=45.25 E-value=7.4 Score=46.17 Aligned_cols=27 Identities=37% Similarity=0.316 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+++.+..|.+.++++ ++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 334444576655554 899999999974
No 207
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=45.17 E-value=2.7e+02 Score=33.79 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=16.7
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+++....|...|.+|+|||+.|
T Consensus 34 i~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHH
Confidence 3566677888899999998765
No 208
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.08 E-value=6.2 Score=45.65 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=20.1
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
++..++.|.+. ++..|+||||||...
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 45667888775 456799999999874
No 209
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.82 E-value=1.4e+02 Score=28.67 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001007 55 EISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQ 116 (1191)
Q Consensus 55 ~~~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~ 116 (1191)
.+.|.+|.=+|..||+.+..+...+.+++++..+.... +++..+....|+.....+..
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re----~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE----FEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999988888764321 34445555555555444443
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.10 E-value=10 Score=44.90 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=28.7
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhc-----C--C--ccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSAL-----D--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svL-----d--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
..++|+.|.+.+ ++-..+..++..+- . | ....|+-||++|+|||+..
T Consensus 11 ~~~~f~di~G~~----~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAE----EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCH----HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcH----HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 456788887754 34433333333221 1 1 2234889999999999876
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=44.07 E-value=5.8 Score=42.19 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.2
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999987
No 212
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=43.58 E-value=1.3e+02 Score=30.20 Aligned_cols=23 Identities=4% Similarity=0.242 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
.....+..|..|+.+|..+-..|
T Consensus 95 Rae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 95 RAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 213
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.54 E-value=1.6e+02 Score=27.14 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001007 574 RDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 574 ~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+..+..|..+++.++.++.+
T Consensus 50 ae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 214
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.48 E-value=2.8e+02 Score=28.27 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
...+++..+..-+..|..++.||..
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 215
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=42.93 E-value=5 Score=43.54 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=24.8
Q ss_pred eeecceeeCCCCChhhHHhch-HHh-----Hhhh-cCCccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPF-----VQSA-LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PL-----V~sv-LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+||.|-+.+...+++.+.| .|+ +..+ +.-..+ |+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHH
Confidence 356777766555444454432 333 2222 111223 888999999999876
No 216
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.89 E-value=1.9e+02 Score=26.04 Aligned_cols=24 Identities=0% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
.++..+..++.++.++.....+|.
T Consensus 49 Kiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 49 KLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 217
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.86 E-value=8.7 Score=45.68 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=28.1
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhh-----hcCCc----cEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQS-----ALDGY----NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~s-----vLdGy----N~~IfAYGQTGSGKTyTM 236 (1191)
..++||.|.+.+. +-..+..++.. .+... ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~----~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEE----AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHH----HHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHH----HHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4567888877543 33333333322 22221 223889999999999887
No 218
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=42.71 E-value=9 Score=42.95 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..+++|.| ++..++||||||...
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 3455678876 568899999999843
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=42.71 E-value=8.1 Score=45.67 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.3
Q ss_pred CccEEEEeeccCCCCccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM 236 (1191)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34456888999999999876
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.67 E-value=32 Score=40.42 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=29.3
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcC--C--ccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~-svLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
.-+||.|=|-+.--+++.+.| .|+.. ..+. | ..-.|+-||+.|+|||.+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 456777766554444444444 34322 1222 2 2346888999999999754
No 221
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.50 E-value=66 Score=29.23 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
.+.+.+|+.+++-.....++++..+.+.+.+|..|+.++..|..++.+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666667777777777777777777777766543
No 222
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.44 E-value=2.6e+02 Score=27.45 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 556 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 556 ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
++.++..++..++.+++....+++.|+++.+.+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 34444444555555666666666666666665553
No 223
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.21 E-value=2.5e+02 Score=27.29 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001007 492 DLKQEILGLRQAL 504 (1191)
Q Consensus 492 ~Lk~Ei~~Lk~~L 504 (1191)
.|+.+...|+..|
T Consensus 10 ~lq~~~~ql~~qL 22 (112)
T 1x79_B 10 KLQLMLRQANDQL 22 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 224
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=42.18 E-value=1.2e+02 Score=28.68 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
.+.-++++...+..|+.+|.+|+++|......
T Consensus 43 Nk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 43 NKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999999876653
No 225
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.89 E-value=2.8e+02 Score=27.69 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 001007 644 IERLHEENEKLFDRLT 659 (1191)
Q Consensus 644 ieqL~eEneKL~~rl~ 659 (1191)
-+.|+-||+.+.++|.
T Consensus 142 FE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 142 FEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhHHHHHH
Confidence 4678888998888874
No 226
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=41.88 E-value=5.7 Score=42.53 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=16.0
Q ss_pred hhcCCccEEEEeeccCCCCcccccc
Q 001007 213 SALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 213 svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.++.|.++.| .++||||||.+..
T Consensus 124 ~~l~~~~~ll--~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRRIL--NLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEEEE--CCCTTSCHHHHHH
T ss_pred HHHhcCCeEE--EcCCCCCcHHHHH
Confidence 3444545433 8999999998873
No 227
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.69 E-value=2.2e+02 Score=26.50 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~ 596 (1191)
+...+..++..+..++.++.+++.+|.+..
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666677777776666544
No 228
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=41.43 E-value=6 Score=42.28 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=19.5
Q ss_pred HhhhcCC--ccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDG--YNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdG--yN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++.| +.-|++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3444555 33468999999999998864
No 229
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.31 E-value=9.8 Score=41.70 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=19.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.|+ +..++||||||.+.
T Consensus 37 ~~i~~~~~~~~~--lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMDV--LCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCCE--EEECSSCSSHHHHH
T ss_pred HHHHHHhcCCcE--EEECCCCCcHHHHH
Confidence 345667788774 55679999999875
No 230
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.27 E-value=1.4e+02 Score=28.13 Aligned_cols=11 Identities=36% Similarity=0.320 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001007 489 EIQDLKQEILG 499 (1191)
Q Consensus 489 eI~~Lk~Ei~~ 499 (1191)
.|.+|++++..
T Consensus 24 ~id~lke~~~q 34 (94)
T 3jsv_C 24 LIDKLKEEAEQ 34 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 231
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=41.17 E-value=9.5 Score=29.21 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=15.0
Q ss_pred hhhhccccccccccccc
Q 001007 881 VLRMRGIDQDTWRHQVT 897 (1191)
Q Consensus 881 ~~~~~~~~~~~~~~~~~ 897 (1191)
|-|++|+|.|+-+||-|
T Consensus 14 v~KLKglDi~~i~~~yT 30 (31)
T 3m50_P 14 VVKLKGLDIETIQQSYD 30 (31)
T ss_dssp HHHHTTCCSCCCCCCCC
T ss_pred HHHHhcCChhhhhhccc
Confidence 56899999999999876
No 232
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=40.57 E-value=1.7e+02 Score=26.17 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 536 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 536 ~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
+..+..++...++++..++--+..+..+...+-+-...++.+....+..+..|++.+
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 334444455555666666666666665555555555556666677777888877655
No 233
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.56 E-value=2.2e+02 Score=26.14 Aligned_cols=25 Identities=4% Similarity=0.149 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 569 MQIQQRDSTIKTLQAKINSIESQRN 593 (1191)
Q Consensus 569 ~qlqq~e~eIe~Lq~eIeeLE~qL~ 593 (1191)
..+..++..+..++.++.+++.+|.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666655553
No 234
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=40.13 E-value=9.8 Score=43.49 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=20.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
..+..++.|.|+ ++.++||||||...
T Consensus 85 ~ai~~i~~g~d~--i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRDL--MACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhcCCCE--EEECCCCCCchHHH
Confidence 445667789875 66789999999865
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=40.05 E-value=17 Score=40.73 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=16.2
Q ss_pred ccEEEEeeccCCCCccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1191)
....|.-.|++|||||+|+
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467788999999999988
No 236
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.73 E-value=9.5 Score=40.72 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
|+.+.+.+...+. .|.-..++-||+.|+|||++.
T Consensus 26 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 26 NKETIDRLQQIAK---DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CTHHHHHHHHHHH---SCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 4455544443333 343223788999999999887
No 237
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=39.70 E-value=2.7e+02 Score=28.13 Aligned_cols=11 Identities=0% Similarity=0.217 Sum_probs=4.5
Q ss_pred HHHHHHHHHHh
Q 001007 585 INSIESQRNEA 595 (1191)
Q Consensus 585 IeeLE~qL~e~ 595 (1191)
+..++++|+..
T Consensus 133 v~~vkkeL~~h 143 (152)
T 4fla_A 133 VTQVRKELKSH 143 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 238
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.54 E-value=12 Score=43.94 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++..++.|.+-.++..++||||||.+.
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 3455667554556688899999999874
No 239
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=39.23 E-value=9.2 Score=44.79 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=19.1
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.+-.++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 345566663344677899999999874
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=38.86 E-value=11 Score=41.52 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=20.9
Q ss_pred HhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 204 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 204 FeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
...+...+..+. ..+..|+-||.+|+|||+..
T Consensus 11 ~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 11 MQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 333433444443 34567888999999999865
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.83 E-value=6.5 Score=49.33 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=26.1
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.||.|++. ++. +..+++-+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr----~~~---i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGR----DEE---IRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSC----HHH---HHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCc----HHH---HHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 45666553 333 3334443344554456779999999999884
No 242
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=37.90 E-value=12 Score=43.27 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.|+ +..++||||||.+.
T Consensus 15 ~i~~~~~~~~~--l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKNA--LICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Confidence 34555678874 56789999999875
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=37.72 E-value=11 Score=38.51 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=20.2
Q ss_pred HhHhhhcCC---ccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDG---YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdG---yN~~IfAYGQTGSGKTyTM 236 (1191)
+-++.++.| ...++.-+|++|||||+.+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 445666643 2346777999999999987
No 244
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=37.70 E-value=15 Score=45.05 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=31.4
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 188 F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|.+..+ .|...|..-+.. +++.+-.|... ....|.|||||||||.
T Consensus 2 ~~~~~~-~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 444443 888888877654 45555667543 3457999999999995
No 245
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.67 E-value=2.4e+02 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 571 IQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 571 lqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+...+.....|...-.+|+.++.+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554443
No 246
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.64 E-value=14 Score=45.59 Aligned_cols=38 Identities=34% Similarity=0.337 Sum_probs=26.3
Q ss_pred ChhhHHhchHHhHhhhcCCcc------EEEEeeccCCCCccccc
Q 001007 199 GQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN------~~IfAYGQTGSGKTyTM 236 (1191)
.|..+...+...+..+..|.. +.|+-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 356666666555555554443 36888999999999876
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=37.54 E-value=8.1 Score=43.01 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=14.8
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345777999999999875
No 248
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=37.31 E-value=10 Score=46.02 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=18.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|..++.....+ +-.|+.|||||+|+
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHH
Confidence 455555444444 45799999999997
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=36.85 E-value=13 Score=37.43 Aligned_cols=16 Identities=31% Similarity=0.227 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.+.-+|++|||||+.+
T Consensus 25 ~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFS 40 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556899999999886
No 250
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.80 E-value=1.2e+02 Score=28.18 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 547 kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
++++..|+..+ .+.+.....+|...+.+|+.++..|..|+.
T Consensus 39 kEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 39 KEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444433 333445556667777777777777777764
No 251
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.13 E-value=2.7e+02 Score=32.59 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+.+++..++..+......+.+++..+....+.|..|+..+..|+
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333334444445555555554444
No 252
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=36.07 E-value=15 Score=44.36 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.3
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+|..++.|.+ ++..++||||||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 45666788988 567889999999864
No 253
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=36.01 E-value=2.7e+02 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 492 DLKQEILGLRQALKEANDQCVLLYNE 517 (1191)
Q Consensus 492 ~Lk~Ei~~Lk~~L~~~~~q~~~l~qE 517 (1191)
........++..+...+..+.....+
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~e 45 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEE 45 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333333444444443333333333
No 254
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.87 E-value=6 Score=44.25 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.3
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346888999999999876
No 255
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=35.72 E-value=13 Score=42.62 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=17.9
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..++.|.|+ +..++||||||.+.
T Consensus 13 i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEEeCCCChHHHHH
Confidence 4455678774 55689999999774
No 256
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=35.69 E-value=8.2 Score=42.14 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-||++|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999987
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.68 E-value=10 Score=37.74 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCcccccc
Q 001007 220 VSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~ 237 (1191)
-++.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356778999999999884
No 258
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=35.60 E-value=12 Score=43.32 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 197 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 197 ~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..|.+++..+...+. .|. ..++-.|..|||||+++
T Consensus 27 n~~Q~~av~~~~~~i~---~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIK---EKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHHHHH---SSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHh---cCC-CEEEEEeCCCCCHHHHH
Confidence 4568877766533332 233 37888999999999877
No 259
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=35.57 E-value=7.2 Score=42.73 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.++ +..++||||||.+.
T Consensus 51 ~i~~i~~~~~~--lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHDV--LAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCCE--EECCCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45556678774 56789999999874
No 260
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=35.39 E-value=18 Score=39.93 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
..+|.-.|++|||||+|+
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 346778899999999998
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.19 E-value=21 Score=44.75 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=33.0
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC----CccEEEEeeccCCCCccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV-~PLV~-svLd----GyN~~IfAYGQTGSGKTyTM 236 (1191)
..++||.|.+.+..-+.+.+.+ .|+-. .++. ....+|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4688899888776666666554 33322 1221 22345788999999999766
No 262
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.91 E-value=18 Score=44.52 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=24.9
Q ss_pred hhhHHhchHHhHhhhcCCcc------EEEEeeccCCCCccccc
Q 001007 200 QAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 200 QeeVFeeV~PLV~svLdGyN------~~IfAYGQTGSGKTyTM 236 (1191)
|.++-..+...+.....|.. +.|+-||++|+|||++.
T Consensus 463 ~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 45555555444554444432 57889999999999886
No 263
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=34.91 E-value=13 Score=38.74 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=16.9
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
++++-.|.-++ -.|+.|||||+.+
T Consensus 16 l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 16 VDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHhccCCCEEE--EECCCCCCHHHHH
Confidence 34444565544 4799999999887
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.38 E-value=12 Score=35.69 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999854
No 265
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=34.31 E-value=15 Score=42.06 Aligned_cols=25 Identities=28% Similarity=0.081 Sum_probs=18.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.+ ++..|+||||||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445566655 556789999999986
No 266
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.06 E-value=6.8e+02 Score=29.92 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 481 KELYEREKEIQDLKQEILGLRQALKE 506 (1191)
Q Consensus 481 ~el~~le~eI~~Lk~Ei~~Lk~~L~~ 506 (1191)
.++...+.++.+.+...+..+...+.
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~ 34 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEA 34 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777776666544
No 267
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.05 E-value=2e+02 Score=26.31 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 546 ~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
++|.+.+.+..+..+.+..++++.--+.++..|..|+.+-.+++..+..
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777777777777777777777766665543
No 268
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=33.98 E-value=23 Score=37.46 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-.|+.|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56889999999999754
No 269
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.69 E-value=4e+02 Score=27.15 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001007 492 DLKQEILGLRQALKEAND 509 (1191)
Q Consensus 492 ~Lk~Ei~~Lk~~L~~~~~ 509 (1191)
.....+..|...+.....
T Consensus 39 ~aE~k~~eLEeeL~~v~~ 56 (155)
T 2efr_A 39 LSEGKSAELEEELKTVTN 56 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 270
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.66 E-value=17 Score=45.70 Aligned_cols=43 Identities=33% Similarity=0.346 Sum_probs=28.2
Q ss_pred cceeeCCCCChhhHHhchHHhHhhhcCCc------cEEEEeeccCCCCccccc
Q 001007 190 FDRVYGPHVGQAELFSDVQPFVQSALDGY------NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 190 FD~VF~p~asQeeVFeeV~PLV~svLdGy------N~~IfAYGQTGSGKTyTM 236 (1191)
|+.|++ |..+...+...|..+..|. ...|+-||++|+|||++.
T Consensus 557 ~~~viG----~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 557 HKRVVG----QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp HHHSCS----CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred hcccCC----cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 344554 5555555555555554442 168899999999999876
No 271
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.56 E-value=17 Score=42.31 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=25.1
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.||.|.+ ++..... ++..+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiG----r~~~i~~---l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIG----RSKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCC----CHHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----cHHHHHH---HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4566555 3333333 3333323444456779999999999873
No 272
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.53 E-value=9.5 Score=44.99 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788999999999987
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.10 E-value=15 Score=37.00 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=20.1
Q ss_pred HhHhhhcC-Cc--cEEEEeeccCCCCccccc
Q 001007 209 PFVQSALD-GY--NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLd-Gy--N~~IfAYGQTGSGKTyTM 236 (1191)
+-++.++. |. ...+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 34555664 43 346788999999999876
No 274
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.23 E-value=2e+02 Score=30.34 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 479 ARKELYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 479 l~~el~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
+..+++..+..|..|..|+..|.+++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.19 E-value=18 Score=36.57 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=19.5
Q ss_pred HhHhhhcC-Cc--cEEEEeeccCCCCccccc
Q 001007 209 PFVQSALD-GY--NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLd-Gy--N~~IfAYGQTGSGKTyTM 236 (1191)
+-++.++. |. .-++.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34555563 32 346777899999999886
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.76 E-value=13 Score=37.19 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.2
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999877
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.74 E-value=17 Score=39.97 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=13.9
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
.|.-.|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45557999999999983
No 278
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=31.68 E-value=20 Score=42.86 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
.+|.-.|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 46777899999999998
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=31.46 E-value=23 Score=36.09 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=15.6
Q ss_pred CccEEEEeeccCCCCccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM 236 (1191)
+..-.|.-.|++|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456667899999999876
No 280
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.40 E-value=23 Score=36.05 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.3
Q ss_pred CccEEEEeeccCCCCccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM 236 (1191)
.....|.-.|.+|||||+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34467888999999999876
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=31.28 E-value=24 Score=41.42 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=17.4
Q ss_pred CccEEEEeeccCCCCcccccc
Q 001007 217 GYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 217 GyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+....|+..|.+|+|||+|..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHH
Confidence 345678889999999999984
No 282
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=30.99 E-value=20 Score=42.58 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=19.7
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++..++.|.+--++..++||||||.+.
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 4555666444445677889999999874
No 283
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=30.98 E-value=16 Score=43.92 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=18.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445566877 467799999999875
No 284
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=30.94 E-value=14 Score=41.71 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=15.6
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
-.|.+.+| .|+||||||+++
T Consensus 173 ~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEEE--EESSSSCHHHHH
T ss_pred hcCCEEEE--ECCCCCCHHHHH
Confidence 36776554 499999999987
No 285
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.92 E-value=2.8e+02 Score=25.58 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 488 KEIQDLKQEILGLRQALKEA 507 (1191)
Q Consensus 488 ~eI~~Lk~Ei~~Lk~~L~~~ 507 (1191)
.....|-+|+..|+-.+..+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~el 38 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEEL 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.92 E-value=15 Score=37.74 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666899999999887
No 287
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=30.77 E-value=12 Score=45.13 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.3
Q ss_pred EEEEeeccCCCCcccccc
Q 001007 220 VSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~ 237 (1191)
..++..|++|||||+|+-
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 457888999999999983
No 288
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=30.67 E-value=14 Score=39.88 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=17.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..++.|.+ .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 444455632 2456799999999875
No 289
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.51 E-value=2.3e+02 Score=24.04 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~~~q~~~l~qEl 518 (1191)
.+-.++..|+.|+.-|+.+|+.--.++..++.|.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 3455667777788888877776655555555544
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.39 E-value=12 Score=42.24 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=14.9
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
.++| ++..|+||||||+++
T Consensus 34 ~~~~--~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSN--WTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCC--EEEECCTTSSHHHHH
T ss_pred ccCc--eEEEcCCCCCHHHHH
Confidence 4555 456799999999988
No 291
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.91 E-value=1.3e+02 Score=34.79 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 541 ~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.+++.++++..+++..+.++....+++++++...+.....|.+++.+|+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444555555555555555555555555555555666666555
No 292
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.72 E-value=1.5e+02 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 571 IQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 571 lqq~e~eIe~Lq~eIeeLE 589 (1191)
..++++.+..|+++...|+
T Consensus 19 naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3334444444444444444
No 293
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.72 E-value=3.1e+02 Score=25.06 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 001007 573 QRDSTIKTLQAKIN 586 (1191)
Q Consensus 573 q~e~eIe~Lq~eIe 586 (1191)
.++.+|..|++-++
T Consensus 67 ~Le~EIatYRkLLE 80 (86)
T 1x8y_A 67 ALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 44667777766553
No 294
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.52 E-value=1.8e+02 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIK 579 (1191)
Q Consensus 551 ~qL~~ql~qLlq~eeElk~qlqq~e~eIe 579 (1191)
..+..++.++.....+++.++..++.++.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333333333333333333
No 295
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.26 E-value=66 Score=25.39 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 630 SKKLEEELKKRDALIERLHEENEKLFD 656 (1191)
Q Consensus 630 kkKLEEeLkkrd~~ieqL~eEneKL~~ 656 (1191)
..||--++.+++.+|-+|++||+.|.+
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 467888889999999999999998753
No 296
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.23 E-value=27 Score=39.79 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.6
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
..+|.-.|++|||||+|+
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 357778899999999998
No 297
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.23 E-value=1e+02 Score=25.23 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 560 LLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1191)
Q Consensus 560 Llq~eeElk~qlqq~e~eIe~Lq~eIeeLE~ 590 (1191)
|.+.++....++...+++|..|+.++.+|+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666677777777777777763
No 298
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=29.18 E-value=15 Score=36.63 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.3
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 299
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.17 E-value=17 Score=42.17 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=19.9
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+++|.+..|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999865
No 300
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.09 E-value=3.5e+02 Score=24.98 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 551 ~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
.+.+.....+..+.++.+.+.+.+..+++.++.++++|+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444555555566666677777776654
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.88 E-value=17 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 36888999999999854
No 302
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=28.88 E-value=19 Score=41.45 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.6
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+++|.|+ +..|+||||||...
T Consensus 5 l~~g~~v--lv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMTT--VLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCEE--EECCCTTSSTTTTH
T ss_pred hhCCCCE--EEEcCCCCCHHHHH
Confidence 4567764 57789999999985
No 303
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=28.85 E-value=26 Score=41.01 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=15.5
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
...|+..|.+|||||+|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4566777999999999983
No 304
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.76 E-value=3.2e+02 Score=26.07 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001007 570 QIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 570 qlqq~e~eIe~Lq~eIeeLE 589 (1191)
++.+++.+++.|+.+.+.|.
T Consensus 66 ~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444
No 305
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.71 E-value=2.6e+02 Score=25.57 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ 90 (1191)
Q Consensus 58 k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q 90 (1191)
.+.+..+++.+..+=+.++.....+.+++.+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444444444433
No 306
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.34 E-value=1.2e+02 Score=34.27 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 550 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 550 ~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
+.+++..+......+..++..+...+..|+.|+.+|.+|+..
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444455555555555555533
No 307
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.18 E-value=16 Score=36.24 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
.+|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999876
No 308
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.14 E-value=14 Score=42.03 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.2
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 455788899999999987
No 309
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.96 E-value=18 Score=36.94 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..+.-+|++|||||..+
T Consensus 24 ~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677999999999985
No 310
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=27.94 E-value=23 Score=42.64 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=18.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..++.|.|+ +..++||||||...
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Confidence 4455678874 56789999999864
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=27.74 E-value=18 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.3
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999754
No 312
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.02 E-value=1.9e+02 Score=26.28 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 598 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~~s 598 (1191)
++.+++.+|..+..-+...+.+++..+...+.+|..|+.+++....+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555556666666666666666666655544333
No 313
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.71 E-value=18 Score=40.02 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
+|.-.|++|||||+++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555699999999998
No 314
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=26.59 E-value=20 Score=39.64 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=17.0
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+..++.| .++..++||+|||.+..
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 4445666 34557899999998873
No 315
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.56 E-value=1.2e+02 Score=27.21 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 549 ~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
.+.+|+.++.++....+ .+..+++.|+.++..|..++
T Consensus 30 ~i~~LE~~v~~le~~~~-------~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELHS-------STTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34444455544433322 23444555555555555444
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.52 E-value=20 Score=35.01 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.4
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999765
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=26.39 E-value=16 Score=36.56 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999887
No 318
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.25 E-value=6.1e+02 Score=26.90 Aligned_cols=10 Identities=0% Similarity=0.096 Sum_probs=5.6
Q ss_pred HHHhHHHHHH
Q 001007 447 LSSLNFSSRA 456 (1191)
Q Consensus 447 LsTLrFAsRA 456 (1191)
...+.|+-.+
T Consensus 124 ~elfd~~~~~ 133 (213)
T 1ik9_A 124 RELIAYALDT 133 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666444
No 319
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=26.14 E-value=7.1e+02 Score=30.34 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=8.0
Q ss_pred HHhHhcCcccchhh
Q 001007 787 AFIRKMEPTRVMDT 800 (1191)
Q Consensus 787 ~~~~~~~~~~~~~~ 800 (1191)
|||=.--|--||-|
T Consensus 204 sfVVekQPP~VlKt 217 (585)
T 1y1u_A 204 TFIIEKQPPQVLKT 217 (585)
T ss_dssp TEEEEECCCSEEES
T ss_pred heEeecCCCceEEe
Confidence 55555666666543
No 320
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.13 E-value=2e+02 Score=24.49 Aligned_cols=13 Identities=8% Similarity=0.391 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 001007 577 TIKTLQAKINSIE 589 (1191)
Q Consensus 577 eIe~Lq~eIeeLE 589 (1191)
+|..|+.++..|+
T Consensus 44 ~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 44 EVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=26.13 E-value=19 Score=35.99 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 322
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.13 E-value=3.9e+02 Score=24.63 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 001007 574 RDSTIKTLQAK 584 (1191)
Q Consensus 574 ~e~eIe~Lq~e 584 (1191)
.+.+|..|+.+
T Consensus 66 kd~ei~rL~~~ 76 (81)
T 3qh9_A 66 KDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34444444443
No 323
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=26.11 E-value=18 Score=39.67 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=16.7
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+++|.+..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 57889999999999999999776
No 324
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.01 E-value=1e+02 Score=30.83 Aligned_cols=8 Identities=38% Similarity=0.248 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001007 511 CVLLYNEV 518 (1191)
Q Consensus 511 ~~~l~qEl 518 (1191)
...+..|+
T Consensus 69 ~~~ie~El 76 (135)
T 2e7s_A 69 ADKLNKEV 76 (135)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 325
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=25.82 E-value=17 Score=37.14 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999988
No 326
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.73 E-value=3.6e+02 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEA 595 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~ 595 (1191)
+..++..-..+|+.|+.+|+..+..+.+.
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666655544
No 327
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=25.66 E-value=20 Score=42.82 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.4
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
++.++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 4456778999999999983
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=25.58 E-value=19 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.7
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
++.-+|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 44558999999999874
No 329
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.40 E-value=15 Score=43.36 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=19.1
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+|..+++|.++. ..++||||||.+.
T Consensus 32 ~~i~~il~g~d~l--v~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDCL--VVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCEE--EECSCHHHHHHHH
T ss_pred HHHHHHHcCCCEE--EECCCCcHHHHHH
Confidence 3455667888754 4579999999865
No 330
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.39 E-value=22 Score=43.65 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=19.5
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 3333334444556789999999999884
No 331
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.21 E-value=20 Score=36.36 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999987
No 332
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.16 E-value=26 Score=44.96 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCCchhhhhhhhhhhcHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccc-cCchhHHHHHHHHHHHHHH
Q 001007 1062 NPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLD-IDHPCAQRQIADARRMVEV 1140 (1191)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1140 (1191)
+|....-=-+.|.=.|+.+|++. -+...+.+- ....+||||..||..--. |-+| .-..+|-+.
T Consensus 918 ~~~l~~~v~~Wa~g~~f~~i~~~-----t~~~eG~~v-----R~~~rl~e~~~q~~~aa~~~g~~------~l~~k~~~a 981 (997)
T 4a4z_A 918 RFAMMNVVYEWARGLSFKEIMEM-----SPEAEGTVV-----RVITWLDEICREVKTASIIIGNS------TLHMKMSRA 981 (997)
T ss_dssp TTTTHHHHHHHHHTCCHHHHHHT-----CSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCHHHHHhc-----CCCCchHHH-----HHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHH
Confidence 44444444467777888888854 223333332 246688888887754211 1111 223456666
Q ss_pred HHhhccccee
Q 001007 1141 LQQMRSDVAL 1150 (1191)
Q Consensus 1141 l~~~~~~~~~ 1150 (1191)
+.-+|.||..
T Consensus 982 ~~~i~R~iv~ 991 (997)
T 4a4z_A 982 QELIKRDIVF 991 (997)
T ss_dssp HHHHSCGGGG
T ss_pred HHHhcCCeee
Confidence 6677888753
No 333
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.16 E-value=1.5e+02 Score=34.36 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 544 k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
..++++..++..++.++....+++++++.+.+.+...|.+++.+++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444444444444444444444455555555544
No 334
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=25.05 E-value=21 Score=38.67 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.4
Q ss_pred cEEEEeeccCCCCccccc
Q 001007 219 NVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM 236 (1191)
+-++...|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 457788999999999877
No 335
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.96 E-value=4.6e+02 Score=31.21 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=14.5
Q ss_pred hccCChhh---hHHHHHHHHhhcc
Q 001007 922 FVHTPAGE---LQRQIRSWLAENF 942 (1191)
Q Consensus 922 ~~~~~~~~---~~~~~~~~~~~~~ 942 (1191)
||||+-|- +-|-|-. |-|||
T Consensus 429 ~vHtlngSglav~R~l~a-lLEn~ 451 (501)
T 1wle_A 429 FAHTVNATGCAVPRLLIA-LLESY 451 (501)
T ss_dssp ECEEEEEEEEEHHHHHHH-HHHHH
T ss_pred EEEEECCccchHHHHHHH-HHHhC
Confidence 88998886 6777755 44666
No 336
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.95 E-value=17 Score=36.94 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.7
Q ss_pred EEEeeccCCCCcccccc
Q 001007 221 SIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~ 237 (1191)
.++-||..|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46779999999999985
No 337
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=24.91 E-value=19 Score=38.27 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.0
Q ss_pred EEEEeeccCCCCccccccc
Q 001007 220 VSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM~G 238 (1191)
..++-||.+|||||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678899999999998853
No 338
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.89 E-value=19 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001007 219 NVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 219 N~~IfAYGQTGSGKTyTM~ 237 (1191)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999984
No 339
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=24.85 E-value=21 Score=35.54 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999887
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.80 E-value=20 Score=35.38 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-.|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999865
No 341
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.72 E-value=33 Score=41.88 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=35.6
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001007 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 186 k~F~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~G 238 (1191)
+.|....=|.|...|..-+.. +++.+-.|... ....|.|||||||||-.
T Consensus 3 ~~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 3 DRFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CcceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 347777778999999887665 45555666532 34569999999999963
No 342
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=24.53 E-value=23 Score=42.84 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=18.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.|..++.+ ..++-.|+.|||||+|+.
T Consensus 188 av~~~l~~--~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQR--PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHhcC--CCeEEECCCCCCHHHHHH
Confidence 34444432 245678999999999983
No 343
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.50 E-value=3e+02 Score=26.95 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001007 483 LYEREKEIQDLKQEILGLRQAL 504 (1191)
Q Consensus 483 l~~le~eI~~Lk~Ei~~Lk~~L 504 (1191)
++.+..+|..|+.++..++.+-
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766554
No 344
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.48 E-value=4.3e+02 Score=24.50 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKIN 586 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIe 586 (1191)
....+++.++...+.++..++.++.
T Consensus 78 ~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 78 NTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555554
No 345
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=24.47 E-value=23 Score=36.56 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=9.2
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555799999999887
No 346
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=24.19 E-value=21 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=14.4
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+-.|. ++.-.|++|||||.++
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCC--EEEEECCCCCCHHHHH
Confidence 33454 3445699999999887
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=23.99 E-value=27 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=16.4
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001007 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 215 LdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+.+....|.-.|.+|||||+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHH
Confidence 3455667888999999999754
No 348
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.94 E-value=33 Score=33.12 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=21.3
Q ss_pred HhHhhhcC-CccEEEEeeccCCCCccccc
Q 001007 209 PFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 209 PLV~svLd-GyN~~IfAYGQTGSGKTyTM 236 (1191)
.++..++. .....|.-.|.+|+|||..+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 34555665 56677888999999999766
No 349
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=23.89 E-value=18 Score=41.80 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=22.1
Q ss_pred eCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 194 YGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 194 F~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
|.+..-|.+.+.. ++.|.+ ++..|+||||||.+..
T Consensus 112 ~~l~~~Q~~ai~~-------~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 112 IEPHWYQKDAVFE-------GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp ECCCHHHHHHHHH-------HHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCCHHHHHHHHH-------HHhcCC--cEEEeCCCCCHHHHHH
Confidence 3444555555443 334444 3567999999999873
No 350
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.58 E-value=4.3e+02 Score=24.23 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001007 568 KMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 568 k~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+.++..+...++.+..+++.++
T Consensus 33 q~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 33 QSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333444444444443
No 351
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.56 E-value=68 Score=38.80 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=17.1
Q ss_pred ceeecceeeCCCCC----hhhHHhc--hHHhHhhhcCCcc
Q 001007 186 KDFEFDRVYGPHVG----QAELFSD--VQPFVQSALDGYN 219 (1191)
Q Consensus 186 k~F~FD~VF~p~as----QeeVFee--V~PLV~svLdGyN 219 (1191)
..|.|-.-|.+... .+++... ...+..+++.|.-
T Consensus 76 ~~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l 115 (575)
T 2i1j_A 76 LQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEI 115 (575)
T ss_dssp EEEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSS
T ss_pred eEEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCC
Confidence 45666666665432 2222222 1455666677654
No 352
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.50 E-value=28 Score=43.13 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=18.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..++.|.|+ +..++||||||.+.
T Consensus 256 ~i~~~l~~~~~--ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCE--EEEeCCCChHHHHH
Confidence 44556788874 56789999999875
No 353
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.49 E-value=9.5e+02 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001007 571 IQQRDSTIKTLQAKINSIESQR 592 (1191)
Q Consensus 571 lqq~e~eIe~Lq~eIeeLE~qL 592 (1191)
|..++..++.+..+|+.|+..+
T Consensus 165 i~~l~~~~~~~~~~i~~l~~~~ 186 (461)
T 3ghg_B 165 LRVLRSILENLRSKIQKLESDV 186 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555554433
No 354
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.45 E-value=3.2e+02 Score=22.76 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE~q 591 (1191)
...++.+..+.+..+.++.....|..++.+
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555443
No 355
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.45 E-value=2.7e+02 Score=23.52 Aligned_cols=35 Identities=9% Similarity=0.237 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINS 587 (1191)
Q Consensus 553 L~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIee 587 (1191)
++.++..+-.+...+...+.+..++|..|+.+++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444433
No 356
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.31 E-value=2.3e+02 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 585 (1191)
Q Consensus 552 qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eI 585 (1191)
+|+.+..++.....++++.+..++.++..|++-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4445555555555566666666666777776654
No 357
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.26 E-value=5e+02 Score=27.56 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 62 STKVQRLKDEIKFVKEDYLELRQEATDLQ 90 (1191)
Q Consensus 62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q 90 (1191)
...+..+++++..+..++..+.++..++.
T Consensus 131 ~~~~~~~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 131 LDTIAENQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544443
No 358
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.26 E-value=23 Score=43.29 Aligned_cols=21 Identities=38% Similarity=0.335 Sum_probs=15.9
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345655 677899999999765
No 359
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=23.15 E-value=1e+03 Score=28.48 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.9
Q ss_pred CCchhhhhhHHHHHHHHhhhhhhhhhhhhhhccccccchhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeec
Q 001007 981 PSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTL 1053 (1191)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1191)
|-+=..+||.+.--+-||+..||- .=||-= +--.||-||--+.--|.|++.
T Consensus 465 ~Y~~SY~ql~~NA~~~v~~~elQ~-------------------HiLRGP---l~~QRR~IlnAl~hGv~ii~~ 515 (526)
T 3iyk_A 465 HYDISFSDLRGNAQRIVYDDELQM-------------------HILRGP---IHFQRRAILGALKFGCKVLGD 515 (526)
T ss_pred cchhhHHHHHHHHHHHhCCHHHHH-------------------HHHcCc---hHHHHHHHHHHHHhceeecCC
Confidence 344457889988888999988872 223332 234688999988888888854
No 360
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.09 E-value=5.4e+02 Score=25.24 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 001007 574 RDSTIKTLQAKI 585 (1191)
Q Consensus 574 ~e~eIe~Lq~eI 585 (1191)
++.+|...+.-|
T Consensus 87 Ld~eI~~qe~iI 98 (119)
T 2avr_X 87 LEAEMEQQKAVI 98 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.09 E-value=28 Score=35.18 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.4
Q ss_pred ccEEEEeeccCCCCccccc
Q 001007 218 YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 218 yN~~IfAYGQTGSGKTyTM 236 (1191)
...+|+-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999766
No 362
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.91 E-value=34 Score=42.18 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=25.2
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001007 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1191)
Q Consensus 189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~ 237 (1191)
.||.|.+ ++.....+ +..+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG----~~~~i~~l---~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQRV---IEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCC----CHHHHHHH---HHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----chHHHHHH---HHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 4555554 34433333 333333444457889999999998763
No 363
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.89 E-value=25 Score=35.46 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
+|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999765
No 364
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.89 E-value=21 Score=42.24 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=29.5
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001007 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 187 ~F~FD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yN~~IfAYGQTGSGKTyTM 236 (1191)
..+||.|-|-+.--+++.+.| -|+... .+. | .--.|+-||+.|+|||++.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 356777766555444444443 344321 222 2 2345888999999999754
No 365
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.83 E-value=6e+02 Score=25.62 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHH
Q 001007 485 EREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQ 552 (1191)
Q Consensus 485 ~le~eI~~Lk~Ei~~Lk~~L~~~-----~~q~~~l~qElqk~~k~~~eLq~dL~~e~~~l~~k~k~~kE~~~q 552 (1191)
.+-..+.+|+.-++.|+...... ..++....+++....+....++.-+..+.-.|..-.+.+-+.+.+
T Consensus 25 ~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vce 97 (141)
T 3okq_A 25 TLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCE 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 34445556666666665553221 123333444555444444555555665555555555444443333
No 366
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.63 E-value=20 Score=40.05 Aligned_cols=19 Identities=42% Similarity=0.522 Sum_probs=14.8
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
.|.+ +.-.|+||||||+++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4665 455699999999887
No 367
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.49 E-value=27 Score=44.33 Aligned_cols=31 Identities=10% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhccC-ChhhhHHHHHHHHhhcccccccccCC
Q 001007 920 ALFVHT-PAGELQRQIRSWLAENFEFLSVTGDD 951 (1191)
Q Consensus 920 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1191)
+..|.| |.|.. .+.+-|=.=.|.|..+--.+
T Consensus 897 ~~~~~~~~~~~~-~~~~kw~~~~~~~~~~~~~~ 928 (936)
T 4a2w_A 897 SFVMESTATGTQ-MDFQKWKSINSSLKNFDVEE 928 (936)
T ss_dssp ---------------------------------
T ss_pred eEEEEecCCCce-eeccccccCCcCcCCCCHHH
Confidence 445678 88887 55899988777776554333
No 368
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.48 E-value=30 Score=39.75 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3577899999999885
No 369
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.34 E-value=56 Score=35.96 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=13.8
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
.+|...|.+|+|||+++
T Consensus 99 ~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEEECSSCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35555699999999988
No 370
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.31 E-value=4.1e+02 Score=24.60 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 001007 578 IKTLQAKINSIE 589 (1191)
Q Consensus 578 Ie~Lq~eIeeLE 589 (1191)
+..|+.+|..|+
T Consensus 52 N~~Lr~~v~~L~ 63 (87)
T 1hjb_A 52 NERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 371
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.19 E-value=28 Score=33.48 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999765
No 372
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=22.15 E-value=27 Score=34.18 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 373
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=22.11 E-value=32 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.9
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 689999999999999999987
No 374
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=22.07 E-value=24 Score=44.14 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=27.2
Q ss_pred CCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001007 195 GPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 195 ~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
.+..-|.+++..+ ....-.|..-.++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 5666788877654 23334555455778899999999875
No 375
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.70 E-value=28 Score=37.09 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcccc
Q 001007 221 SIFAYGQTHSGKTHT 235 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyT 235 (1191)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999974
No 376
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.61 E-value=3.7e+02 Score=27.78 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Q 001007 540 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQR-------DSTIKTLQAKINSIESQRNEAL 596 (1191)
Q Consensus 540 ~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~-------e~eIe~Lq~eIeeLE~qL~e~~ 596 (1191)
.++....++-.++.+.+...+.+.....+.++.++ +.+|..+.+++.+|+.++....
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 377
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=21.58 E-value=1e+03 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.6
Q ss_pred EeeccCCCCcccccc
Q 001007 223 FAYGQTHSGKTHTME 237 (1191)
Q Consensus 223 fAYGQTGSGKTyTM~ 237 (1191)
+-+|.+|||||..|.
T Consensus 64 ~i~G~NGaGKS~lle 78 (517)
T 4ad8_A 64 AFTGETGAGKSIIVD 78 (517)
T ss_dssp EEEESHHHHHHHHTH
T ss_pred EEEcCCCCCHHHHHH
Confidence 358999999998873
No 378
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.45 E-value=1.9e+02 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 562 QLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 562 q~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
+..+++...+.+.+++|..|+.+..+|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344455567777778887777766654
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=21.37 E-value=25 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567999999999876
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=21.31 E-value=23 Score=36.71 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.4
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999887
No 381
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.08 E-value=5.5e+02 Score=24.53 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001007 543 HKIEKEQNAQLRNQVAQLL 561 (1191)
Q Consensus 543 ~k~~kE~~~qL~~ql~qLl 561 (1191)
.+..+++.+.+..++..+.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~ 108 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMG 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 382
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.06 E-value=3.2e+02 Score=23.47 Aligned_cols=9 Identities=33% Similarity=0.494 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001007 552 QLRNQVAQL 560 (1191)
Q Consensus 552 qL~~ql~qL 560 (1191)
++..++..+
T Consensus 27 ~Le~~v~~L 35 (63)
T 2wt7_A 27 TLQAETDQL 35 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 383
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=20.99 E-value=26 Score=34.04 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999865
No 384
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=20.99 E-value=35 Score=42.85 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.9
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999986
No 385
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=20.98 E-value=24 Score=36.32 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001007 221 SIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM 236 (1191)
.|.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566899999999987
No 386
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.89 E-value=4.3e+02 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 479 ARKELYEREKEIQDLKQEILGLRQALK 505 (1191)
Q Consensus 479 l~~el~~le~eI~~Lk~Ei~~Lk~~L~ 505 (1191)
...++..+..+|..|..++..|...+.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777777664
No 387
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.85 E-value=3.4e+02 Score=28.60 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=35.7
Q ss_pred HHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 529 QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1191)
Q Consensus 529 q~dL~~e~~~l~~k~k~~kE~~~qL~~ql~qLlq~eeElk~qlqq~e~eIe~Lq~eIeeLE 589 (1191)
-+.|.+++..+.++++....++..++.++..+.+.....+.++.+..+.|+-...-++.|-
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 3444445555555555555555555555555555555555566666666666677777774
No 388
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=20.71 E-value=28 Score=34.05 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
.+|+-.|..|||||+..
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999865
No 389
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.70 E-value=30 Score=33.84 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-.|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999764
No 390
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=20.70 E-value=35 Score=42.86 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.8
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
++.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 689999999999999999986
No 391
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.66 E-value=3.8e+02 Score=22.76 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEAT 87 (1191)
Q Consensus 57 ~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~ 87 (1191)
+-++|.++|+.|..++..+..+...++.++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466888888888888888887777776655
No 392
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=20.65 E-value=32 Score=39.78 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 001007 222 IFAYGQTHSGKTHTM 236 (1191)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1191)
++..|+||||||...
T Consensus 24 vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 24 TVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEECCCTTSCTTTTH
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999884
No 393
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.59 E-value=3e+02 Score=32.32 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001007 567 QKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1191)
Q Consensus 567 lk~qlqq~e~eIe~Lq~eIeeLE~qL~e~~ 596 (1191)
+..+..++.++|..++.++.+++.++.+..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666665533
No 394
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.53 E-value=35 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.4
Q ss_pred hHhhhcCCccEEEEeeccCCCCccc
Q 001007 210 FVQSALDGYNVSIFAYGQTHSGKTH 234 (1191)
Q Consensus 210 LV~svLdGyN~~IfAYGQTGSGKTy 234 (1191)
.+..+++|.|+ +..|+||||||.
T Consensus 64 ai~~il~g~dv--lv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKESF--AATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCCE--ECCCCBTSCSHH
T ss_pred HHHHHHhCCCE--EEEcCCCCCHHH
Confidence 44556788774 677899999995
No 395
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=20.46 E-value=23 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.3
Q ss_pred EEEeeccCCCCccccccc
Q 001007 221 SIFAYGQTHSGKTHTMEG 238 (1191)
Q Consensus 221 ~IfAYGQTGSGKTyTM~G 238 (1191)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999988853
No 396
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.28 E-value=37 Score=41.32 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=15.9
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001007 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 214 vLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+.+|.| ++..|+||||||...
T Consensus 43 ~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 43 LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTTCC--EEEECCTTSCHHHHH
T ss_pred hcCCCc--EEEEcCCCCcHHHHH
Confidence 345655 567789999999875
No 397
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.28 E-value=3e+02 Score=23.35 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQ 582 (1191)
Q Consensus 553 L~~ql~qLlq~eeElk~qlqq~e~eIe~Lq 582 (1191)
++.++..+.....++..++..+..++..|+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 398
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=20.17 E-value=30 Score=34.00 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.5
Q ss_pred EEEEeeccCCCCccccc
Q 001007 220 VSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 220 ~~IfAYGQTGSGKTyTM 236 (1191)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999864
No 399
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=20.10 E-value=38 Score=41.14 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=19.3
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001007 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 211 V~svLdGyN~~IfAYGQTGSGKTyTM 236 (1191)
+..++.|.|+ +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 6667788875 56789999999984
No 400
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=20.09 E-value=36 Score=43.05 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.8
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001007 216 DGYNVSIFAYGQTHSGKTHTM 236 (1191)
Q Consensus 216 dGyN~~IfAYGQTGSGKTyTM 236 (1191)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 689999999999999999986
No 401
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.01 E-value=5.1e+02 Score=23.72 Aligned_cols=27 Identities=0% Similarity=0.101 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001007 568 KMQIQQRDSTIKTLQAKINSIESQRNE 594 (1191)
Q Consensus 568 k~qlqq~e~eIe~Lq~eIeeLE~qL~e 594 (1191)
+.+++.+-+.+.....++.+++..|.+
T Consensus 47 ~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 47 RAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444444444455555555543
Done!