BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001008
(1191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/483 (22%), Positives = 183/483 (37%), Gaps = 120/483 (24%)
Query: 415 EELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQ 474
E LG TI SDKTGTLT N M T+A + D+
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRM---------------------TVAHMWSDNQIHEADTT 378
Query: 475 TDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQKFFRVLAICHTAIPDVNE 534
+ G++ + + W+ R+ +C+ A+ N+
Sbjct: 379 ENQSGVSFDKTSA-----------------TWL---------ALSRIAGLCNRAVFQANQ 412
Query: 535 ETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYELLHVLE 594
E I A + D S + EL S +++ Y + +
Sbjct: 413 ENLPILKRAVAGD----------------ASESALLKCIELCCGSVKEMRERYTKIVEIP 456
Query: 595 FTSSRKRMSVMVRNP---ENQLLLLCKGADSVMFERLSK---HG--QQFEAETRRHI-NR 645
F S+ K + +NP E + LL+ KGA + +R S HG Q + E + N
Sbjct: 457 FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNA 516
Query: 646 YAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGAT 705
Y E G + R LG + +++F + T D + +L +G
Sbjct: 517 YLELG----GLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPL--------DNLCFVGLI 564
Query: 706 AVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPD 765
++ D + VP+ + K AGIKV ++TGD TA I ++
Sbjct: 565 SMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII--------------- 609
Query: 766 MEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLE 825
+G++ ++E + ++ +SQVN +++K V+ G L ++L+
Sbjct: 610 -----SEGNE------TVEDIAARLNIPVSQVNP-RDAK---ACVVHGSDLKDMTSEQLD 654
Query: 826 KMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGV--G 883
D+ ++ R+SP+QK ++ + G GDG ND ++ADIGV G
Sbjct: 655 ----DILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMG 710
Query: 884 ISG 886
I+G
Sbjct: 711 IAG 713
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 154/378 (40%), Gaps = 73/378 (19%)
Query: 520 RVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVS 579
R+ +C+ A+ N+E I A + D S + EL S
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGD----------------ASESALLKCIELCCGS 435
Query: 580 GQKVNRVYELLHVLEFTSSRKRMSVMVRNP---ENQLLLLCKGADSVMFERLSK---HG- 632
+++ Y + + F S+ K + +NP E + LL+ KGA + +R S HG
Sbjct: 436 VKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGK 495
Query: 633 -QQFEAETRRHI-NRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVAS 690
Q + E + N Y E G + R LG + +++F + T D +
Sbjct: 496 EQPLDEELKDAFQNAYLELG----GLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPL-- 549
Query: 691 AAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLL 750
+L +G ++ D + VP+ + K AGIKV ++TGD TA I ++
Sbjct: 550 ------DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 603
Query: 751 RQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLV 810
+G++ ++E + ++ +SQVN +++K V
Sbjct: 604 --------------------SEGNE------TVEDIAARLNIPVSQVNP-RDAK---ACV 633
Query: 811 IDGKSLDFALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGAN 870
+ G L ++L+ D+ ++ R+SP+QK ++ + G GDG N
Sbjct: 634 VHGSDLKDMTSEQLD----DILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVN 689
Query: 871 DVGMLQEADIGV--GISG 886
D ++ADIGV GI+G
Sbjct: 690 DSPASKKADIGVAMGIAG 707
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 698 DLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQI 757
DL +G A+ D + VP+ + K AGIKV ++TGD TA I ++
Sbjct: 587 DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII------- 639
Query: 758 VITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLD 817
+G++ ++E + ++ I QVN +++K V+ G L
Sbjct: 640 -------------SEGNE------TIEDIAARLNIPIGQVNP-RDAK---ACVVHGSDL- 675
Query: 818 FALDKKLEKMFLDLAIDCAS-VICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQ 876
K L LD + + ++ R+SP+QK ++ + G GDG ND L+
Sbjct: 676 ----KDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALK 731
Query: 877 EADIGV--GISG 886
+ADIGV GISG
Sbjct: 732 KADIGVAMGISG 743
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 415 EELGQVDTILSDKTGTLTCNSM 436
E LG TI SDKTGTLT N M
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM 391
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 131/593 (22%), Positives = 205/593 (34%), Gaps = 122/593 (20%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I SDKTGTLT N M K
Sbjct: 330 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK----------------------- 366
Query: 464 GERTFEVDDSQTDAPGLNG-NIVESGKSVKGFNFRDER-IMNGQWVNEPHSDVIQKFFRV 521
F +D D LN +I S + +G ++++ I +GQ+ D + + +
Sbjct: 367 ---MFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATI 417
Query: 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581
A+C+ + D NE G E+ + A + + F + ++S E
Sbjct: 418 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNS 474
Query: 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLL-----LLCKGADSVMFERLS--KHGQQ 634
+ ++ + LEF+ RK MSV ++ + KGA + +R + + G
Sbjct: 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT- 533
Query: 635 FEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEK 694
TR + + + + VI G D R A RE +V + +
Sbjct: 534 ----TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSSR 584
Query: 695 I---ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLR 751
E DL +G + D +K V I AGI+V ++TGD N G A ++ R
Sbjct: 585 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD------NKGTAIAICR 638
Query: 752 QEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVI 811
R GI N + G
Sbjct: 639 ---------------------------------------RIGIFGENEEVADRAYTGREF 659
Query: 812 DGKSLDFALDKKLEKMFLDLAIDCASVIC-CRSSPKQKALVTRLVKGTGKTTLAIGDGAN 870
D D L ++ E C C R P K+ + ++ + T GDG N
Sbjct: 660 D----DLPLAEQREA--------CRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVN 707
Query: 871 DVGMLQEADIGVGISGVEGMQAVMSSDYAIAQFRFLERLLLV-HGHWCYRRISMMICYFF 929
D L++A+IG+ + G A +S+ +A F + V G Y + I Y
Sbjct: 708 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766
Query: 930 YKNLTFGFTLFWYEAYASFSGRP-AYNDWYMSCYNVFFTSLPVIALGVFDQDV 981
N+ +F A G P A + N+ LP ALG D+
Sbjct: 767 SSNVGEVVCIFLTAAL----GLPEALIPVQLLWVNLVTDGLPATALGFNPPDL 815
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 131/593 (22%), Positives = 205/593 (34%), Gaps = 122/593 (20%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I SDKTGTLT N M K
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK----------------------- 365
Query: 464 GERTFEVDDSQTDAPGLNG-NIVESGKSVKGFNFRDER-IMNGQWVNEPHSDVIQKFFRV 521
F +D D LN +I S + +G ++++ I +GQ+ D + + +
Sbjct: 366 ---MFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATI 416
Query: 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581
A+C+ + D NE G E+ + A + + F + ++S E
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNS 473
Query: 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLL-----LLCKGADSVMFERLS--KHGQQ 634
+ ++ + LEF+ RK MSV ++ + KGA + +R + + G
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT- 532
Query: 635 FEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEK 694
TR + + + + VI G D R A RE +V + +
Sbjct: 533 ----TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSSR 583
Query: 695 I---ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLR 751
E DL +G + D +K V I AGI+V ++TGD N G A ++ R
Sbjct: 584 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD------NKGTAIAICR 637
Query: 752 QEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVI 811
R GI N + G
Sbjct: 638 ---------------------------------------RIGIFGENEEVADRAYTGREF 658
Query: 812 DGKSLDFALDKKLEKMFLDLAIDCASVIC-CRSSPKQKALVTRLVKGTGKTTLAIGDGAN 870
D D L ++ E C C R P K+ + ++ + T GDG N
Sbjct: 659 D----DLPLAEQREA--------CRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVN 706
Query: 871 DVGMLQEADIGVGISGVEGMQAVMSSDYAIAQFRFLERLLLV-HGHWCYRRISMMICYFF 929
D L++A+IG+ + G A +S+ +A F + V G Y + I Y
Sbjct: 707 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 930 YKNLTFGFTLFWYEAYASFSGRP-AYNDWYMSCYNVFFTSLPVIALGVFDQDV 981
N+ +F A G P A + N+ LP ALG D+
Sbjct: 766 SSNVGEVVCIFLTAAL----GLPEALIPVQLLWVNLVTDGLPATALGFNPPDL 814
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 138/333 (41%), Gaps = 53/333 (15%)
Query: 607 RNPENQLLLLCKGADSVMFERLSK---HGQQFEAETRRHINRYAEAGLRTLVIAYRELGE 663
R+P + L++ KGA + ER S GQ+ + + + A L + R LG
Sbjct: 509 RDPRHVLVM--KGAPERVLERCSSILIKGQELPLDEQWR-EAFQTAYLSLGGLGERVLGF 565
Query: 664 DEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLA 723
+ + EK++ D EA+ + L G ++ D + VP+ + K
Sbjct: 566 CQLYLSEKDY---PPGYAFDVEAMNFPTS-----GLSFAGLVSMIDPPRATVPDAVLKCR 617
Query: 724 QAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSL 783
AGI+V ++TGD TA I + ++ + + ++
Sbjct: 618 TAGIRVIMVTGDHPITAKAIAASVGIISEGSE--------------------------TV 651
Query: 784 ESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLEKMFLDLAIDC-ASVICCR 842
E + ++R + QVN K+++ VI+G L K ++ L A+ ++ R
Sbjct: 652 EDIAARLRVPVDQVNR-KDAR---ACVINGMQL-----KDMDPSELVEALRTHPEMVFAR 702
Query: 843 SSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVM-SSDYAIA 901
+SP+QK ++ + G GDG ND L++ADIGV + G+ G A ++D +
Sbjct: 703 TSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAM-GIAGSDAAKNAADMILL 761
Query: 902 QFRFLERLLLV-HGHWCYRRISMMICYFFYKNL 933
F + V G + + I Y KN+
Sbjct: 762 DDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 130/593 (21%), Positives = 204/593 (34%), Gaps = 122/593 (20%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I S KTGTLT N M K
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCK----------------------- 365
Query: 464 GERTFEVDDSQTDAPGLNG-NIVESGKSVKGFNFRDER-IMNGQWVNEPHSDVIQKFFRV 521
F +D D LN +I S + +G ++++ I +GQ+ D + + +
Sbjct: 366 ---MFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATI 416
Query: 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581
A+C+ + D NE G E+ + A + + F + ++S E
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNS 473
Query: 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLL-----LLCKGADSVMFERLS--KHGQQ 634
+ ++ + LEF+ RK MSV ++ + KGA + +R + + G
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT- 532
Query: 635 FEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEK 694
TR + + + + VI G D R A RE +V + +
Sbjct: 533 ----TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSSR 583
Query: 695 I---ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLR 751
E DL +G + D +K V I AGI+V ++TGD N G A ++ R
Sbjct: 584 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD------NKGTAIAICR 637
Query: 752 QEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVI 811
R GI N + G
Sbjct: 638 ---------------------------------------RIGIFGENEEVADRAYTGREF 658
Query: 812 DGKSLDFALDKKLEKMFLDLAIDCASVIC-CRSSPKQKALVTRLVKGTGKTTLAIGDGAN 870
D D L ++ E C C R P K+ + ++ + T GDG N
Sbjct: 659 D----DLPLAEQREA--------CRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVN 706
Query: 871 DVGMLQEADIGVGISGVEGMQAVMSSDYAIAQFRFLERLLLV-HGHWCYRRISMMICYFF 929
D L++A+IG+ + G A +S+ +A F + V G Y + I Y
Sbjct: 707 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 930 YKNLTFGFTLFWYEAYASFSGRP-AYNDWYMSCYNVFFTSLPVIALGVFDQDV 981
N+ +F A G P A + N+ LP ALG D+
Sbjct: 766 SSNVGEVVCIFLTAAL----GLPEALIPVQLLWVNLVTDGLPATALGFNPPDL 814
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 135/349 (38%), Gaps = 52/349 (14%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I SDKTGTLT N M K M ++R
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK-----------MFIIDRIDGDLC 377
Query: 464 GERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQKFFRVLA 523
F V S T AP G ++++ K V+ +GQ+ D + + + A
Sbjct: 378 LLNEFSVTGS-TYAP--EGEVLKNDKPVR----------SGQY------DGLVELATICA 418
Query: 524 ICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKV 583
+C+ + D NE G E+ + A + + F + ++S E +
Sbjct: 419 LCNDSSLDFNETKGIYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNSVI 475
Query: 584 NRVYELLHVLEFTSSRKRMSVMVRNPENQLL----LLCKGADSVMFERLS--KHGQQFEA 637
++ + LEF+ RK MSV +++ + KGA + +R + + G
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGT---- 531
Query: 638 ETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKI-- 695
TR + + + + VI G D R A RE +V + K
Sbjct: 532 -TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSTKFME 585
Query: 696 -ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINI 743
E DL +G + D +K V I AGI+V ++TGD TAI I
Sbjct: 586 YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Query: 840 CC--RSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSD 897
CC R P K+ + ++ + T GDG ND L++A+IG+ + G A +S+
Sbjct: 673 CCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTASE 731
Query: 898 YAIAQFRFLERLLLV-HGHWCYRRISMMICYFFYKNLTFGFTLFWYEAYASFSGRP-AYN 955
+A F + V G Y + I Y N+ +F A G P A
Sbjct: 732 MVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL----GLPEALI 787
Query: 956 DWYMSCYNVFFTSLPVIALGVFDQDV 981
+ N+ LP ALG D+
Sbjct: 788 PVQLLWVNLVTDGLPATALGFNPPDL 813
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 707 VEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETA 740
VED ++ PE I +L Q+GI++ +LTGD TA
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Query: 845 PKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDYAIAQFR 904
P+ K+ + +K G GDG ND L +ADIG+ + +D AI
Sbjct: 602 PEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMG--------TGTDVAIES-- 651
Query: 905 FLERLLLVHGHW----CYRRISMMICYFFYKNLTFGF 937
+ L+HG RR+S +NL F F
Sbjct: 652 --AGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAF 686
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 409 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFVKCSVAGVAYGRVMTEVER-------- 457
+ SN+ E++ ++DTI+ DKTGTLT + +F+ S++ +AY + +
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQFIGDSLS-LAYAASVEALSSHPIAKAIV 75
Query: 458 TLAKRKGERTFEVDD-SQTDAPGLNGNIVESGKSVK 492
AK +G + EV D + G+ G I + VK
Sbjct: 76 KYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEVK 111
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 46/238 (19%)
Query: 670 EKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKV 729
E+E L+ E +A A K A+E ++ G PE ++ +A G+
Sbjct: 60 ERELLRLAAIAERRSEQPIAEAIVK----------KALEHGIELGEPEKVEVIAGEGVVA 109
Query: 730 -WVLTGDK--METAINIGYACSLLRQEMKQIVITLDSPDMEA-----LEKQGDKENITKV 781
+L G+K ME + G A S ++ + L+ + EA + + G E I V
Sbjct: 110 DGILVGNKRLME---DFGVAVS------NEVELALEKLEREAKTAVIVARNGRVEGIIAV 160
Query: 782 SLESVTKQIREGISQVNSAKESKVTFGLVI-DGKSLDFALDKKLEKMFLDLAIDCASVIC 840
S +++ + + + ++ K + G++ D A+ ++L LDL I A V+
Sbjct: 161 S-DTLKESAKPAVQEL---KRMGIKVGMITGDNWRSAEAISRELN---LDLVI--AEVL- 210
Query: 841 CRSSPKQKALVTRLVKGTGKTTLA-IGDGANDVGMLQEADIGVGISGVEGMQAVMSSD 897
P QK+ + K K +A +GDG ND L +AD+G+ + G AV S D
Sbjct: 211 ----PHQKS--EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV-GSGSDVAVESGD 261
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 33.1 bits (74), Expect = 0.91, Method: Composition-based stats.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 46/238 (19%)
Query: 670 EKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKV 729
E+E L+ E +A A K A+E ++ G PE ++ +A G+
Sbjct: 60 ERELLRLAAIAERRSEHPIAEAIVK----------KALEHGIELGEPEKVEVIAGEGVVA 109
Query: 730 -WVLTGDK--METAINIGYACSLLRQEMKQIVITLDSPDMEA-----LEKQGDKENITKV 781
+L G+K ME + G A S ++ + L+ + EA + + G E I V
Sbjct: 110 DGILVGNKRLME---DFGVAVS------NEVELALEKLEREAKTAVIVARNGRVEGIIAV 160
Query: 782 SLESVTKQIREGISQVNSAKESKVTFGLVI-DGKSLDFALDKKLEKMFLDLAIDCASVIC 840
S +++ + + + ++ K + G++ D A+ ++L LDL I A V+
Sbjct: 161 S-DTLKESAKPAVQEL---KRMGIKVGMITGDNWRSAEAISRELN---LDLVI--AEVL- 210
Query: 841 CRSSPKQKALVTRLVKGTGKTTLA-IGDGANDVGMLQEADIGVGISGVEGMQAVMSSD 897
P QK+ + K K +A +GDG ND L +AD+G+ + G AV S D
Sbjct: 211 ----PHQKS--EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV-GSGSDVAVESGD 261
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 409 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFVKCSVAGVAYGRVMTEVER-------- 457
+ SN+ E++ ++DTI+ +KTGTLT + +F+ S++ +AY + +
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLS-LAYAASVEALSSHPIAKAIV 75
Query: 458 TLAKRKGERTFEVDD-SQTDAPGLNGNIVESGKSVK 492
AK +G + EV D + G+ G I + VK
Sbjct: 76 KYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEVK 111
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 409 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFVKCSVAGVAYGRVMTEVER-------- 457
+ SN+ E++ ++DTI+ +KTGTLT + +F+ S++ +AY + +
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLTYGTPIVTQFIGDSLS-LAYAASVEALSSHPIAKAIV 75
Query: 458 TLAKRKGERTFEVDD-SQTDAPGLNGNIVESGKSVK 492
AK +G + EV D + G+ G I + VK
Sbjct: 76 KYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEVK 111
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 590 LHVLEFTSSRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRRHINRYAEA 649
+H L F KR ++ + + KGA + E L+K + I++YAE
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 650 GLRTLVIAYRELGE 663
GLR+L +A + + E
Sbjct: 454 GLRSLAVARQVVPE 467
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 415 EELGQVDTILSDKTGTLTCNSMEFVK 440
EE+ +D + SDKTGTLT N + K
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDK 343
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 717 ECIDKLA-QAGIK--VWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQG 773
E ID++A +AG++ V +T + ME +N Q +++ V L +E +EK
Sbjct: 20 ETIDEIAREAGVEEEVKKITKEAMEGKLN-------FEQSLRKRVSLLKDLPIEKVEKAI 72
Query: 774 DKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLEKMFLDLAI 833
+ T+ + E++ + G + + + + LD+A +L L
Sbjct: 73 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTG 132
Query: 834 DCASVICCRSSPKQKALVTRLVKGTG---KTTLAIGDGANDVGMLQEADIGVG 883
D + ++ + ++ ++ K G + T+A+GDGAND+ M ++A + +
Sbjct: 133 DVEGEVLKENAKGE--ILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIA 183
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 717 ECIDKLA-QAGIK--VWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQG 773
E ID++A +AG++ V +T + ME +N Q +++ V L +E +EK
Sbjct: 20 ETIDEIAREAGVEEEVKKITKEAMEGKLN-------FEQSLRKRVSLLKDLPIEKVEKAI 72
Query: 774 DKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLEKMFLDLAI 833
+ T+ + E++ + G + + + + LD+A +L L
Sbjct: 73 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTG 132
Query: 834 DCASVICCRSSPKQKALVTRLVKGTG---KTTLAIGDGANDVGMLQEADIGVG 883
D + ++ + ++ ++ K G + T+A+GDGAND+ M ++A + +
Sbjct: 133 DVEGEVLKENAKGE--ILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIA 183
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 839 ICCRSSPKQKALVTRLVKGTG---KTTLAIGDGANDVGMLQEADIGVGISGV-EGMQAVM 894
+ + KQK + +++ G + T++ GDG ND+ ML+ A IGV + E ++A
Sbjct: 181 VTAKGDTKQKG-IDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA-- 237
Query: 895 SSDYAIA 901
++DY A
Sbjct: 238 AADYVTA 244
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 839 ICCRSSPKQKALVTRLVKGTG---KTTLAIGDGANDVGMLQEADIGVGISGV-EGMQAVM 894
+ + KQK + +++ G + T++ GDG ND+ ML+ A IGV + E ++A
Sbjct: 181 VTAKGDTKQKG-IDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA-- 237
Query: 895 SSDYAIA 901
++DY A
Sbjct: 238 AADYVTA 244
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 862 TLAIGDGANDVGMLQEADIGV 882
T+A+GDGAND+ ML A +G+
Sbjct: 342 TVAVGDGANDIDMLAAAGLGI 362
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 46/238 (19%)
Query: 670 EKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKV 729
E+E L+ E +A A K A+E ++ G PE ++ +A G+
Sbjct: 40 ERELLRLAAIAERRSEHPIAEAIVK----------KALEHGIELGEPEKVEVIAGEGVVA 89
Query: 730 -WVLTGDK-------METAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKV 781
+L G+K + + + A L +E K VI + + G E I V
Sbjct: 90 DGILVGNKRLXEDFGVAVSNEVELALEKLEREAKTAVI---------VARNGRVEGIIAV 140
Query: 782 SLESVTKQIREGISQVNSAKESKVTFGLVI-DGKSLDFALDKKLEKMFLDLAIDCASVIC 840
S +++ + + + ++ K + G + D A+ ++L LDL I A V+
Sbjct: 141 S-DTLKESAKPAVQEL---KRXGIKVGXITGDNWRSAEAISRELN---LDLVI--AEVL- 190
Query: 841 CRSSPKQKALVTRLVKGTGKTTLA-IGDGANDVGMLQEADIGVGISGVEGMQAVMSSD 897
P QK+ + K K +A +GDG ND L +AD+G+ + G AV S D
Sbjct: 191 ----PHQKS--EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV-GSGSDVAVESGD 241
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 845 PKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISG 886
P+ K V +++ G GDG ND L++AD G+ + G
Sbjct: 612 PQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEG 653
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 347 FYDPRRAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPA 406
FY R P+ L F + + G +P+ L + + + ++ K A
Sbjct: 313 FY--RSNPIVQILEFTLAITIIG--VPVGLPAVVTTTMAVGAAYL----------AKKKA 358
Query: 407 RARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKC-SVAGV 446
+ + E L V+ + SDKTGTLT N + +VAGV
Sbjct: 359 IVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGV 399
>pdb|1VQ0|A Chain A, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VQ0|B Chain B, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
Length = 302
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 737 METAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITK 780
+ETA I Y C R++ K ++ LD ++E + K+G E + K
Sbjct: 234 VETA-EIKYKCDCNREKAKNALLVLDKKELEDMRKEGKGEVVCK 276
>pdb|1FFT|A Chain A, The Structure Of Ubiquinol Oxidase From Escherichia Coli
pdb|1FFT|F Chain F, The Structure Of Ubiquinol Oxidase From Escherichia Coli
Length = 663
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1051 YSSVVWAVNCQMALSINYFTWIQHFFIWGS 1080
Y+S+VWA C LS + W+ HFF G+
Sbjct: 313 YTSLVWATVCITVLS--FIVWLHHFFTMGA 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,791,353
Number of Sequences: 62578
Number of extensions: 1321407
Number of successful extensions: 3223
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3142
Number of HSP's gapped (non-prelim): 86
length of query: 1191
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1081
effective length of database: 8,089,757
effective search space: 8745027317
effective search space used: 8745027317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)