BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001014
(1190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase
Small Subunit Mutant C248d Complexed With Uridine
5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase
Small Subunit Mutant C248d Complexed With Uridine
5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase
Small Subunit Mutant C248d Complexed With Uridine
5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase
Small Subunit Mutant C248d Complexed With Uridine
5'-Monophosphate
Length = 1073
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/1071 (57%), Positives = 782/1071 (73%), Gaps = 19/1071 (1%)
Query: 88 KRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD 147
KRTD++ ILILGAGPIVIGQACEFDYSG QACKAL+EEGY VIL+NSNPATIMTDP +AD
Sbjct: 3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMAD 62
Query: 148 RTYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDA 207
TYI P+ E+V +++EKERPDA+LPTMGGQTALN A+ L G LE++GV +IGA DA
Sbjct: 63 ATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADA 122
Query: 208 IKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI 267
I KAEDR F AMK IG++T SGI +T++E +++A ++G FP IIRP+FT+GG+GGGI
Sbjct: 123 IDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG-FPCIIRPSFTMGGSGGGI 181
Query: 268 AYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMG 327
AYN+EEFE IC GL S T ++L+++SL+GWKEYE+EV+RD DN +I+CSIEN D MG
Sbjct: 182 AYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 241
Query: 328 VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387
+HTGDSITVAPAQTLTDKEYQ +R+ S+A++REIGVE GGSNVQFAVNP +G ++VIEMN
Sbjct: 242 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN 301
Query: 388 PRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-KKTPASFEPSIDYVVTKIPR 446
PRVSRSSALASKATGFPIAK+AAKL+VGY+LD++ NDIT +TPASFEPSIDYVVTKIPR
Sbjct: 302 PRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPR 361
Query: 447 FAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLECGFSGWGCSNVKELDWDW 506
F FEKF G+ LTTQMKSVGE MA+GRT QES QKALR LE G +G+ +
Sbjct: 362 FNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEAL 421
Query: 507 EQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSV 566
+++ L+ DR+ I A + G+ VD + L+ ID+WFL Q +EL+ +E+ + +
Sbjct: 422 TKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGI 481
Query: 567 SNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTP 626
+ + D ++KR+GF+D ++A E E+R+ R + P YKRVDTCAAEF +T
Sbjct: 482 TGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTA 541
Query: 627 YMYSSYDFECESAP-TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNS 685
YMYS+Y+ ECE+ P T ++K+++LGGGPNRIGQGIEFDYCC H S +L+ GYETIM+N
Sbjct: 542 YMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC 601
Query: 686 NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEH 745
NPETVSTDYDTSDRLYFEP+T+EDVL ++ +E+P+G+IVQ+GGQTPLKL+
Sbjct: 602 NPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLA---------- 651
Query: 746 RLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI 805
R A+G V + GTSPD+ID AEDRERF ++ L ++QP + A+ AKEI
Sbjct: 652 RALEAAG---VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI 708
Query: 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALA 865
GYP+VVRPSYVLGGRAMEIVY + L Y + AV V + PVL+D +L DA+E+DVDA+
Sbjct: 709 GYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAIC 768
Query: 866 DSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMN 925
D V+IGGIMEHIEQAGVHSGDSAC +P T+S D + KLA L V GLMN
Sbjct: 769 DG-EMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMN 827
Query: 926 CQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK 985
Q+A+ + +VYL+E NPRA+RTVPFVSKA G PLAK AA VM+GKSL + G TKEVIP
Sbjct: 828 VQFAVKNN-EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Query: 986 HVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVF 1045
+ SVKE VLPF KF G D LLGPEMRSTGEVMG+ +F AFAKAQ+ + + G
Sbjct: 887 YYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRAL 946
Query: 1046 LSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVA 1105
LS+ + K + +A L GF++ +T GTA L GI V K+HEGRPH D +
Sbjct: 947 LSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIK 1006
Query: 1106 NGQIQMMVITSSGDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRS 1156
NG+ ++ T+SG + D +RR L YKV TT++G A A A+ +
Sbjct: 1007 NGEYTYIINTTSGRRAIE-DSRVIRRSALQYKVHYDTTLNGGFATAMALNA 1056
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 1226 bits (3172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1071 (57%), Positives = 781/1071 (72%), Gaps = 19/1071 (1%)
Query: 88 KRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD 147
KRTD++ ILILGAGPIVIGQACEFDYSG QACKAL+EEGY VI +NSNPATIMTDP +AD
Sbjct: 3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMAD 62
Query: 148 RTYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDA 207
TYI P+ E+V +++EKERPDA+LPTMGGQTALN A+ L G LE++GV +IGA DA
Sbjct: 63 ATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADA 122
Query: 208 IKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI 267
I KAEDR F AMK IG++T SGI +T++E +++A ++G FP IIRP+FT+GG+GGGI
Sbjct: 123 IDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG-FPCIIRPSFTMGGSGGGI 181
Query: 268 AYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMG 327
AYN+EEFE IC GL S T ++L+++SL+GWKEYE+EV+RD DN +I+CSIEN D MG
Sbjct: 182 AYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 241
Query: 328 VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387
+HTGDSITVAPAQTLTDKEYQ +R+ S+A++REIGVE GGSNVQFAVNP +G ++VIEMN
Sbjct: 242 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN 301
Query: 388 PRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-KKTPASFEPSIDYVVTKIPR 446
PRVSRSSALASKATGFPIAK+AAKL+VGY+LD++ NDIT +TPASFEPSIDYVVTKIPR
Sbjct: 302 PRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPR 361
Query: 447 FAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLECGFSGWGCSNVKELDWDW 506
F FEKF G+ LTTQMKSVGE MA+GRT QES QKALR LE G +G+ +
Sbjct: 362 FNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEAL 421
Query: 507 EQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSV 566
+++ L+ DR+ I A + G+ VD + L+ ID+WFL Q +EL+ +E+ + +
Sbjct: 422 TKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGI 481
Query: 567 SNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTP 626
+ + D ++KR+GF+D ++A E E+R+ R + P YKRVDTCAAEF +T
Sbjct: 482 TGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTA 541
Query: 627 YMYSSYDFECESAP-TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNS 685
YMYS+Y+ ECE+ P T ++K+++LGGGPNRIGQGIEFDYCC H S +L+ GYETIM+N
Sbjct: 542 YMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC 601
Query: 686 NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEH 745
NPETVSTDYDTSDRLYFEP+T+EDVL ++ +E+P+G+IVQ+GGQTPLKL+
Sbjct: 602 NPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLA---------- 651
Query: 746 RLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI 805
R A+G V + GTSPD+ID AEDRERF ++ L ++QP + A+ AKEI
Sbjct: 652 RALEAAG---VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI 708
Query: 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALA 865
GYP+VVRPSYVLGGRAMEIVY + L Y + AV V + PVL+D +L DA+E+DVDA+
Sbjct: 709 GYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAIC 768
Query: 866 DSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMN 925
D V+IGGIMEHIEQAGVHSGDSAC +P T+S D + KLA L V GLMN
Sbjct: 769 DG-EMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMN 827
Query: 926 CQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK 985
Q+A+ + +VYL+E NPRA+RTVPFVSKA G PLAK AA VM+GKSL + G TKEVIP
Sbjct: 828 VQFAVKNN-EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Query: 986 HVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVF 1045
+ SVKE VLPF KF G D LLGPEMRSTGEVMG+ +F AFAKAQ+ + + G
Sbjct: 887 YYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRAL 946
Query: 1046 LSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVA 1105
LS+ + K + +A L GF++ +T GTA L GI V K+HEGRPH D +
Sbjct: 947 LSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIK 1006
Query: 1106 NGQIQMMVITSSGDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRS 1156
NG+ ++ T+SG + D +RR L YKV TT++G A A A+ +
Sbjct: 1007 NGEYTYIINTTSGRRAIE-DSRVIRRSALQYKVHYDTTLNGGFATAMALNA 1056
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/1071 (57%), Positives = 780/1071 (72%), Gaps = 19/1071 (1%)
Query: 88 KRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD 147
KRTD++ ILILGAGPIVIGQACEFDYSG QACKAL+EEGY VI +NSNPATIMTDP +AD
Sbjct: 3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMAD 62
Query: 148 RTYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDA 207
TYI P+ E+V +++EKERPDA+LPTMGGQTALN A+ L G LE++GV +IGA DA
Sbjct: 63 ATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADA 122
Query: 208 IKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI 267
I KAEDR F AMK IG++T SGI +T++E +++A ++G FP IIRP+FT+GG+GGGI
Sbjct: 123 IDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG-FPCIIRPSFTMGGSGGGI 181
Query: 268 AYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMG 327
AYN+EEFE IC GL S T ++L+++SL+GWKEYE+EV+RD DN +I+CSIEN D MG
Sbjct: 182 AYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 241
Query: 328 VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387
+HTGDSITVAPAQTLTDKEYQ +R+ S+A++REIGVE GGSNVQFAVNP +G ++VIEMN
Sbjct: 242 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN 301
Query: 388 PRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-KKTPASFEPSIDYVVTKIPR 446
PRVSRSSALASKATGFPIAK+AAKL+VGY+LD++ NDIT +TPASFEPSIDYVVTKIPR
Sbjct: 302 PRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPR 361
Query: 447 FAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLECGFSGWGCSNVKELDWDW 506
F FEKF G+ LTTQMKSVGE MA+GRT QES QKALR LE G +G+ +
Sbjct: 362 FNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEAL 421
Query: 507 EQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSV 566
+++ L+ DR+ I A + G+ VD + L+ ID+WFL Q +EL+ +E+ + +
Sbjct: 422 TKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGI 481
Query: 567 SNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTP 626
+ + D ++KR+GF+D ++A E E+R+ R + P YKRVDTCAAEF +T
Sbjct: 482 TGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTA 541
Query: 627 YMYSSYDFECESAP-TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNS 685
YMYS+Y+ ECE+ P T ++K+++LGGGPNRIGQGIEFDYCC H S +L+ GYETIM+N
Sbjct: 542 YMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC 601
Query: 686 NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEH 745
NPETVSTDYDTSDRLYFEP+T+EDVL ++ +E+P+G+IVQ+GGQTPLKL+
Sbjct: 602 NPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLA---------- 651
Query: 746 RLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI 805
R A+G V + GTSPD+ID AEDRERF ++ L ++QP + A+ AKEI
Sbjct: 652 RALEAAG---VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI 708
Query: 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALA 865
GYP+VVR SYVLGGRAMEIVY + L Y + AV V + PVL+D +L DA+E+DVDA+
Sbjct: 709 GYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAIC 768
Query: 866 DSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMN 925
D V+IGGIMEHIEQAGVHSGDSAC +P T+S D + KLA L V GLMN
Sbjct: 769 DG-EMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMN 827
Query: 926 CQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK 985
Q+A+ + +VYL+E NPRA+RTVPFVSKA G PLAK AA VM+GKSL + G TKEVIP
Sbjct: 828 VQFAVKNN-EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
Query: 986 HVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVF 1045
+ SVKE VLPF KF G D LLGPEMRSTGEVMG+ +F AFAKAQ+ + + G
Sbjct: 887 YYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRAL 946
Query: 1046 LSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVA 1105
LS+ + K + +A L GF++ +T GTA L GI V K+HEGRPH D +
Sbjct: 947 LSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIK 1006
Query: 1106 NGQIQMMVITSSGDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRS 1156
NG+ ++ T+SG + D +RR L YKV TT++G A A A+ +
Sbjct: 1007 NGEYTYIINTTSGRRAIE-DSRVIRRSALQYKVHYDTTLNGGFATAMALNA 1056
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 165/399 (41%), Gaps = 56/399 (14%)
Query: 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI 151
+RK+L+ G I I + +A E G + I S AD Y+
Sbjct: 6 IRKVLVANRGEIAI-----------RVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYL 54
Query: 152 T-----PMTPEL-VEQVLEKERP---DALLPTMGGQTALNLAVALAESGALEKYGVELIG 202
P+ L +E ++E + DA+ P G L+ + A+ E G+ IG
Sbjct: 55 VGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYG---FLSENIQFAKRCREE--GIIFIG 109
Query: 203 AKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIG--NTLDECISIANEIGEFPLIIRPAFTL 260
+ + D+ + A G+ P G + L++ ++ A G +P+II+ A
Sbjct: 110 PNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHG-YPIIIKAALGG 168
Query: 261 GGTGGGIAYNKEE----FEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316
GG G I +K E FE AA + +V VEK + K E++++ D N+V
Sbjct: 169 GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVH 228
Query: 317 I----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQF 372
+ CS++ + VAP+ +L+D+ QR+ + ++ ++R +G G+ V+F
Sbjct: 229 LYERDCSVQR------RHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGT-VEF 281
Query: 373 AVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPAS 432
V+ E IE+NPR+ + TG I + ++ G SL I K+
Sbjct: 282 LVS--GDEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQED-- 337
Query: 433 FEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMA 471
+I +A + +E L M G+ MA
Sbjct: 338 ---------IRINGYAIQSRVTTEDPLNNFMPDTGKIMA 367
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 14/200 (7%)
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKY 852
D +A A+ GYP++++ + GGR M IV + + E A V ++K
Sbjct: 148 DVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKL 207
Query: 853 LSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTI 912
+ + I+V L D GN+V + E + P+ ++S I +
Sbjct: 208 IENPKHIEVQILGDYEGNIV--HLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAV 265
Query: 913 KLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
+L + + ++ + SGD Y +E NPR G + + L+ G
Sbjct: 266 QLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGC 323
Query: 972 SLNDLGFTKEV-IPKHVSVK 990
SL+ + EV IPK ++
Sbjct: 324 SLH----SHEVGIPKQEDIR 339
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 147/348 (42%), Gaps = 36/348 (10%)
Query: 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI 151
+ K+L+ G I + + +A KE G + I + + LAD Y+
Sbjct: 2 VNKVLVANRGEIAV-----------RIIRACKELGIPTVAIYNEVESTARHVKLADEAYM 50
Query: 152 TPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGAL----EKYGVELIGAKLDA 207
P ++ L K+R L +G LAE+ E+ G+ IG
Sbjct: 51 IGTDP--LDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKV 108
Query: 208 IKKAEDRDLFKQAMKTIGVKTPPS--GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGG 265
I+ D+ K+ MK GV P G+ +L+E ++A EIG +P++++ GG G
Sbjct: 109 IELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIG-YPVLLKATAGGGGRGI 167
Query: 266 GIAYNKEE----FEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII---- 317
I N+EE +E + A +L+EK + K E +V+ D NV+ +
Sbjct: 168 RICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERD 227
Query: 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPV 377
CSI+ + +AP+ LT ++ + + +EIG G+ ++F +
Sbjct: 228 CSIQR------RNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGT-MEFIADQ- 279
Query: 378 DGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDI 425
+G + IEMN R+ ++ TG I K K++ G L D+
Sbjct: 280 EGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDV 327
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 32/226 (14%)
Query: 766 IDAAEDRERFNAIIKELSIEQPKG--GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAME 823
I+ D+ R ++K+ + G G+ KS +A A+A+EIGYPV+++ + GGR +
Sbjct: 109 IELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIR 168
Query: 824 IVYTDETLVTYLENAVEVDPERP-----VLIDKYLSDAIEIDVDALADSCGNVVIGGIME 878
I +E LV E A + E+ +L++K++ + I+ L D GNV
Sbjct: 169 ICRNEEELVKNYEQASR-EAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNV------- 220
Query: 879 HIEQAGVHSGDSACMI-----------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQ 927
+H G+ C I P+ ++ + + K AK + +
Sbjct: 221 ------IHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTME 274
Query: 928 YAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL 973
+ G++Y +E N R P G + K+ + +G+ L
Sbjct: 275 FIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPL 320
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 149/373 (39%), Gaps = 52/373 (13%)
Query: 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI 151
L K+LI G I + + +A KE G + + ++S + LAD +
Sbjct: 2 LEKVLIANRGEIAL-----------RILRACKELGIKTVAVHSTADRELMHLSLADESVC 50
Query: 152 TPMTPELVEQVLEKERPDALLPTMGGQTALNLAVA-LAESG----ALEKYGVELIGAKLD 206
+ P Q + + G TA++ LAE+ +E+ G +G +
Sbjct: 51 --IGPAPATQSYLQIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAE 108
Query: 207 AIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDE---CISIANEIGEFPLIIRPAFTLGGT 263
I+ D+ K AMK GV T P G ++ ++IA E+G +P+II+ A GG
Sbjct: 109 VIRLMGDKVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAREVG-YPVIIKAAGGGGGR 167
Query: 264 GGGIAYNKEEFEAICK-----AGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII- 317
G + Y++ E K AG AA V +EK L + E++V+ D N + +
Sbjct: 168 GMRVVYDESELIKSAKLTRTEAG-AAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLG 226
Query: 318 ---CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAV 374
CS++ I APA + +K Q + + EIG G+ F
Sbjct: 227 DRDCSLQR------RHQKVIEEAPAPGIDEKARQEVFARCVQACIEIGYRGAGT---FEF 277
Query: 375 NPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPND---------- 424
+G IEMN RV ++ TG I K +++ G L D
Sbjct: 278 LYENGRFYFIEMNTRVQVEHPVSEMVTGVDIVKEMLRIASGEKLSIRQEDVVIRGHALEC 337
Query: 425 -ITKKTPASFEPS 436
I + P +F PS
Sbjct: 338 RINAEDPKTFMPS 350
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 33/203 (16%)
Query: 789 GGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE------NAVEVD 842
G + + E ALAIA+E+GYPV+++ + GGR M +VY + L+ + A +
Sbjct: 136 GPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGN 195
Query: 843 PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMI-------- 894
P V ++K+L++ ++V L+D GN +H GD C +
Sbjct: 196 PM--VYLEKFLTNPRHVEVQVLSDGQGN-------------AIHLGDRDCSLQRRHQKVI 240
Query: 895 ---PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPF 951
P I + + ++ + G ++ + +G Y +E N R P
Sbjct: 241 EEAPAPGIDEKARQEVFARCVQACIEIGYRGAGTFEF-LYENGRFYFIEMNTRVQVEHPV 299
Query: 952 VSKAIGHPLAKYAALVMSGKSLN 974
G + K + SG+ L+
Sbjct: 300 SEMVTGVDIVKEMLRIASGEKLS 322
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 22/246 (8%)
Query: 192 ALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDECISIANEIGE 249
A K G+ IG K D +++ ++ + ++GV P+ + + + E +A IG
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIG- 171
Query: 250 FPLIIRPAFTLGGTGGGIAYNK----EEFEAICKAGLAASLTSQVLVEKSLLGWKEYELE 305
+P++++ ++ GG G + ++ +E + +AA +V +EK + + E +
Sbjct: 172 YPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231
Query: 306 VMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI 361
++ D NVV + CS++ + V APA L++ + Q L YS+ I
Sbjct: 232 ILGDTHGNVVHLFERDCSVQRRNQKVVER------APAPYLSEAQRQELAAYSLKIAGAT 285
Query: 362 GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKL----SVGYS 417
G V++ ++ G+ IE+NPR+ + TG I K + ++G
Sbjct: 286 NY-IGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTP 344
Query: 418 LDQIPN 423
+PN
Sbjct: 345 QSGVPN 350
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 796 ADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYL----ENAVEVDPERPVLIDK 851
A+ +A IGYPV+++ S+ GGR M ++ ++ L + A+ + V ++K
Sbjct: 161 AEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEK 220
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+ A ++ L D+ GNVV + E + P +S + +++++
Sbjct: 221 LVERARHVESQILGDTHGNVV--HLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYS 278
Query: 912 IKLAKRLNVCGLMNCQYAI-TTSGDVYLLEANPR 944
+K+A N G +Y + +G Y +E NPR
Sbjct: 279 LKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPR 312
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 22/246 (8%)
Query: 192 ALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDECISIANEIGE 249
A K G+ IG K D +++ ++ + ++GV P+ + + + E +A IG
Sbjct: 113 ACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIG- 171
Query: 250 FPLIIRPAFTLGGTGGGIAYNK----EEFEAICKAGLAASLTSQVLVEKSLLGWKEYELE 305
+P++++ ++ GG G + ++ +E + +AA +V +EK + + E +
Sbjct: 172 YPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231
Query: 306 VMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI 361
++ D NVV + CS++ + V APA L++ + Q L YS+ I
Sbjct: 232 ILGDTHGNVVHLFERDCSVQRRNQKVVER------APAPYLSEAQRQELAAYSLKIAGAT 285
Query: 362 GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKL----SVGYS 417
G V++ ++ G+ IE+NPR+ + TG I K + ++G
Sbjct: 286 NY-IGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTP 344
Query: 418 LDQIPN 423
+PN
Sbjct: 345 QSGVPN 350
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 796 ADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYL----ENAVEVDPERPVLIDK 851
A+ +A IGYPV+++ S+ GGR M ++ ++ L + A+ + V ++K
Sbjct: 161 AEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEK 220
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+ A ++ L D+ GNVV + E + P +S + +++++
Sbjct: 221 LVERARHVESQILGDTHGNVV--HLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYS 278
Query: 912 IKLAKRLNVCGLMNCQYAI-TTSGDVYLLEANPR 944
+K+A N G +Y + +G Y +E NPR
Sbjct: 279 LKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPR 312
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 6/187 (3%)
Query: 759 WGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLG 818
W S +D E+ F+ I + E + G K D L A+E+GYPV+++ S G
Sbjct: 183 WSGSGLRVDWQEND--FSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGG 240
Query: 819 GRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVV-IGGIM 877
G+ + V + P P+ + + + ++V LAD GN + + G
Sbjct: 241 GKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRD 300
Query: 878 EHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVY 937
+++ + A P + + + + +KLAK + +Y + G Y
Sbjct: 301 CSVQRRHQKIIEEA---PATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFY 357
Query: 938 LLEANPR 944
LE NPR
Sbjct: 358 FLELNPR 364
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 232 GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVL 291
G +D+ + A E+G +P++I+ + GG G N ++F + + A S +
Sbjct: 212 GYVKDVDDGLQAAEEVG-YPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIF 270
Query: 292 VEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEY 347
V + + E++++ D N + + CS++ I APA T +
Sbjct: 271 VMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQR------RHQKIIEEAPATIATPAVF 324
Query: 348 QRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ + ++ + + +G G+ V++ + DG +E+NPR+
Sbjct: 325 EHMEQCAVKLAKMVGYVSAGT-VEYLYSQ-DGSFYFLELNPRL 365
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 125 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 178
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 179 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 236
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 237 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 290
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 291 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 346
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 53 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 108
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 109 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 168
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 169 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 227
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 285
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 286 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 343
Query: 971 KSL 973
L
Sbjct: 344 ADL 346
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 125 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 178
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 179 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 236
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 237 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 290
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 291 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 346
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 53 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 108
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 109 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 168
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 169 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 227
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 285
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 286 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 343
Query: 971 KSL 973
L
Sbjct: 344 ADL 346
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 125 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 178
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 179 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 236
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 237 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 290
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 291 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 346
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 53 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 108
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 109 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 168
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 169 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 227
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 285
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 286 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 343
Query: 971 KSL 973
L
Sbjct: 344 ADL 346
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 125 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 178
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 179 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 236
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 237 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 290
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 291 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 346
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 53 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 108
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 109 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 168
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 169 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 227
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 285
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 286 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 343
Query: 971 KSL 973
L
Sbjct: 344 ADL 346
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 102 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 155
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 156 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 213
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 214 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 267
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 268 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 323
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 30 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 85
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 86 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 145
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 146 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 204
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 205 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 262
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 263 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 320
Query: 971 KSL 973
L
Sbjct: 321 ADL 323
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 102 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 155
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 156 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 213
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 214 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 267
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 268 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 323
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 30 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 85
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 86 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 145
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 146 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 204
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 205 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 262
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 263 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 320
Query: 971 KSL 973
L
Sbjct: 321 ADL 323
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 34/239 (14%)
Query: 197 GVELIGAKLDAIKKAEDRDLF--KQAMKTIGVKTPPSGIGNTLD--ECISIANEIGE--- 249
G++ IG L+ + D+F K +T +K I T + +A E E
Sbjct: 102 GIKFIGPHLEHL------DMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG 155
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEEFE---AICKAGLAASLT---SQVLVEKSLLGWKEYE 303
FPL+I+ T GG G G+ +EE E A +A A + S+V +E+ + K E
Sbjct: 156 FPLMIKA--TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIE 213
Query: 304 LEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++V+ D N+V + CS++ + VAP+ L+ QR+ D +I ++
Sbjct: 214 VQVIGDEHGNIVHLFERDCSVQR------RHQKVVEVAPSVGLSPTLRQRICDAAIQLME 267
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL 418
I G+ V+F V+ E IE+NPRV + TG I K ++ G L
Sbjct: 268 NIKYVNAGT-VEFLVS--GDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADL 323
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%)
Query: 680 TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIH 739
T+ + SN + S +D Y + + +++ER I+ Q + P +
Sbjct: 30 TVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIER----IIDVAKQANVDAIHPGY 85
Query: 740 QYLDEH-RLPSASGDGLVRIWGTSPDSIDAAEDR--ERFNAIIKELSIEQPKGGIAKSEA 796
+L E+ + + ++ G + +D D+ R AI +L + G KS
Sbjct: 86 GFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYE 145
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP-----VLIDK 851
A A+E G+P++++ + GG+ M IV + L A + + E+ V I++
Sbjct: 146 LAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA-KSEAEKSFGNSEVYIER 204
Query: 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
Y+ + I+V + D GN+V + E + P+ +S + I
Sbjct: 205 YIDNPKHIEVQVIGDEHGNIV--HLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAA 262
Query: 912 IKLAKRLNVCGLMNCQYAITTSGD-VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970
I+L + + ++ + SGD + +E NPR G + K LV +G
Sbjct: 263 IQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 320
Query: 971 KSL 973
L
Sbjct: 321 ADL 323
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 23/246 (9%)
Query: 192 ALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIG--NTLDECISIANEIGE 249
ALE GV +G AI+ D+ K+ + V T P +G DE + I+N+IG
Sbjct: 94 ALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIG- 152
Query: 250 FPLIIRPAFTLGGTGGGIAYNKEE----FEAICKAGLAASLTSQVLVEKSLLGWKEYELE 305
+P++I+ + GG G IA+N +E F++ + ++ +EK + + E++
Sbjct: 153 YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212
Query: 306 VMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI 361
V+ D N + + CSI+ + V AP+ L + + + + ++A+ + +
Sbjct: 213 VLCDSHGNGIYLGERECSIQRRNQKVVEE------APSPFLDEATRRAMGEQAVALAKAV 266
Query: 362 GVECGGSNVQFAVNPVDGE--VMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLD 419
G G+ V+F VDG+ +EMN R+ + TG + + +++ G L
Sbjct: 267 GYASAGT-VEFI---VDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLS 322
Query: 420 QIPNDI 425
D+
Sbjct: 323 ITQGDV 328
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 93/232 (40%), Gaps = 30/232 (12%)
Query: 760 GTSPDSIDAAEDRERFNAIIKELSIEQPKG--GIAKSEADALAIAKEIGYPVVVRPSYVL 817
G +I+A D+ I +E ++ G G+ + +A+ I+ +IGYPV+++ S
Sbjct: 104 GPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGG 163
Query: 818 GGRAMEIVYTD----ETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVI 873
GG+ M I + D E + A + + I+K+++ I++ L DS GN
Sbjct: 164 GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGN--- 220
Query: 874 GGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCLDTISSWTIKLAKRLNVCG 922
G++ G+ C I P+ + + + + LAK +
Sbjct: 221 ----------GIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYAS 270
Query: 923 LMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLN 974
++ + + Y LE N R P G L + V +G+ L+
Sbjct: 271 AGTVEFIVDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLS 322
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLI 849
G S D L AK IG+PV+++ S GG+ + V +E + A P P+ I
Sbjct: 217 GCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFI 276
Query: 850 DKYLSDAIEIDVDALADSCG-NVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTIS 908
K A ++V LAD G N+ + G +++ + A P + +
Sbjct: 277 MKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEA---PVTIAKAETFHEME 333
Query: 909 SWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPR 944
++L K + +Y + G Y LE NPR
Sbjct: 334 KAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 370
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 244 ANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYE 303
A IG FP++I+ + GG G +E+F A+ S + + K + E
Sbjct: 229 AKRIG-FPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLE 287
Query: 304 LEVMRD-LADNVVII---CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++++ D N+ + CS++ + +T+A A+T + E +R + +
Sbjct: 288 VQLLADQYGTNISLFGRDCSVQRRHQKIIEEA-PVTIAKAETFHEMEKAAVR-----LGK 341
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLD 419
+G G+ V++ + DG+ +E+NPR+ +G + ++++G +
Sbjct: 342 LVGYVSAGT-VEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMH 400
Query: 420 QIPN 423
+I +
Sbjct: 401 RISD 404
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLI 849
G S D L AK IG+PV+++ S GG+ + V +E + A P P+ I
Sbjct: 218 GCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFI 277
Query: 850 DKYLSDAIEIDVDALADSCG-NVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTIS 908
K A ++V LAD G N+ + G +++ + A P + +
Sbjct: 278 MKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEA---PVTIAKAETFHEME 334
Query: 909 SWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPR 944
++L K + +Y + G Y LE NPR
Sbjct: 335 KAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 371
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 244 ANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYE 303
A IG FP++I+ + GG G +E+F A+ S + + K + E
Sbjct: 230 AKRIG-FPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLE 288
Query: 304 LEVMRD-LADNVVII---CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359
++++ D N+ + CS++ + +T+A A+T + E +R + +
Sbjct: 289 VQLLADQYGTNISLFGRDCSVQRRHQKIIEEA-PVTIAKAETFHEMEKAAVR-----LGK 342
Query: 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLD 419
+G G+ V++ + DG+ +E+NPR+ +G + ++++G +
Sbjct: 343 LVGYVSAGT-VEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMH 401
Query: 420 QIPN 423
+I +
Sbjct: 402 RISD 405
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 198 VELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP--SGIGNTLDECISIANEIGEFPLIIR 255
++ IG +I+K +D+ K M V P G+ + E IA +IG +P+II+
Sbjct: 99 LKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIG-YPVIIK 157
Query: 256 PAFTLGGTGGGIAYNKEEFEAICKAGLAASLTS----QVLVEKSLLGWKEYELEVMRDLA 311
GG G +A +++E E + + T+ + +EK + ++ E++++ D
Sbjct: 158 ATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSY 217
Query: 312 DNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGG 367
NV+ + C+I+ + AP+ L D+ + + + ++ + + E G
Sbjct: 218 GNVIHLGERDCTIQR------RMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAG 271
Query: 368 SNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDI 425
+ ++F + D + +EMN R+ + TG + K+ ++++G L DI
Sbjct: 272 T-IEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLPYKQEDI 328
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 38/231 (16%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYL----ENAVEVDPER 845
G+ K ++A IAK+IGYPV+++ + GG+ + + ++ L T + A
Sbjct: 135 GLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNG 194
Query: 846 PVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMI----------- 894
+ ++K++ + I++ + DS GNV +H G+ C I
Sbjct: 195 GLYMEKFIENFRHIEIQIVGDSYGNV-------------IHLGERDCTIQRRMQKLVEEA 241
Query: 895 PTKTISSSCLDTISSWTIKLAKRLNV--CGLMNCQYAITTSGDVYLLEANPRASRTVPFV 952
P+ + + + ++ AK +N G + Y + + Y +E N R P
Sbjct: 242 PSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRIQVEHPVT 300
Query: 953 SKAIGHPLAKYAALVMSGKSL----NDLGFTKEVIPKHVSVKEAVLPFEKF 999
G L K V G L D+ T I ++ + P++ F
Sbjct: 301 EMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAEN---PYKNF 348
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 46/372 (12%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 5 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 119
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 178
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPM 326
++ +A A+ ++ V +EK L + E++V+ D N + + CS++
Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR---- 234
Query: 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386
+ APA +T + + + + +IG G +F +GE IEM
Sbjct: 235 --RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYR-GAGTFEFLFE--NGEFYFIEM 289
Query: 387 NPRVSRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEP 435
N R+ + + TG + K +++ G L + I + P +F P
Sbjct: 290 NTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLP 349
Query: 436 SIDYVVTKIPRF 447
S KI RF
Sbjct: 350 S----PGKITRF 357
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 147 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 207 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 260
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 261 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQ 319
Query: 972 SLN 974
L+
Sbjct: 320 PLS 322
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 46/372 (12%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 25 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 81
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 82 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 139
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 140 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 198
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPM 326
++ +A A+ ++ V +EK L + E++V+ D N + + CS++
Sbjct: 199 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR---- 254
Query: 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386
+ APA +T + + + + +IG G+ F +GE IEM
Sbjct: 255 --RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEM 309
Query: 387 NPRVSRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEP 435
N R+ + TG + K +++ G L + I + P +F P
Sbjct: 310 NTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLP 369
Query: 436 SIDYVVTKIPRF 447
S KI RF
Sbjct: 370 S----PGKITRF 377
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 167 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 226
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 227 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 280
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 281 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 339
Query: 972 SLN 974
L+
Sbjct: 340 PLS 342
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 145/368 (39%), Gaps = 38/368 (10%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 8 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 122
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 123 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 181
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330
++ +A A+ ++ V +EK L + E++V+ D N + + E M
Sbjct: 182 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLA--ERDCSMQRRH 239
Query: 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ APA +T + + + + +IG G+ F +GE IEMN R+
Sbjct: 240 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEMNTRI 296
Query: 391 SRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEPSIDY 439
+ TG + K +++ G L + I + P +F PS
Sbjct: 297 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPS--- 353
Query: 440 VVTKIPRF 447
KI RF
Sbjct: 354 -PGKITRF 360
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 150 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 209
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 210 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 263
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 264 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 322
Query: 972 SLN 974
L+
Sbjct: 323 PLS 325
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 145/368 (39%), Gaps = 38/368 (10%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 8 IVIANRGEIALEILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 122
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 123 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 181
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330
++ +A A+ ++ V +EK L + E++V+ D N + + E M
Sbjct: 182 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLA--ERDCSMQRRH 239
Query: 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ APA +T + + + + +IG G+ F +GE IEMN R+
Sbjct: 240 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEMNTRI 296
Query: 391 SRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEPSIDY 439
+ TG + K +++ G L + I + P +F PS
Sbjct: 297 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPS--- 353
Query: 440 VVTKIPRF 447
KI RF
Sbjct: 354 -PGKITRF 360
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 150 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 209
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 210 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 263
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 264 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 322
Query: 972 SLN 974
L+
Sbjct: 323 PLS 325
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 145/368 (39%), Gaps = 38/368 (10%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 26 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 82
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 83 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 140
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 141 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 199
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330
++ +A A+ ++ V +EK L + E++V+ D N + + E M
Sbjct: 200 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLA--ERDCSMQRRH 257
Query: 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ APA +T + + + + +IG G+ F +GE IEMN R+
Sbjct: 258 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEMNTRI 314
Query: 391 SRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEPSIDY 439
+ TG + K +++ G L + I + P +F PS
Sbjct: 315 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPS--- 371
Query: 440 VVTKIPRF 447
KI RF
Sbjct: 372 -PGKITRF 378
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 168 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 227
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 228 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 281
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 282 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 340
Query: 972 SLN 974
L+
Sbjct: 341 PLS 343
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 46/372 (12%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 5 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 119
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 178
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPM 326
++ +A A+ ++ V +EK L + E++V+ D N + + CS++
Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR---- 234
Query: 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386
+ APA +T + + + + +IG G+ F +GE IEM
Sbjct: 235 --RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEM 289
Query: 387 NPRVSRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEP 435
N R+ + TG + K +++ G L + I + P +F P
Sbjct: 290 NTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLP 349
Query: 436 SIDYVVTKIPRF 447
S KI RF
Sbjct: 350 S----PGKITRF 357
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 147 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 207 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 260
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 261 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 319
Query: 972 SLN 974
L+
Sbjct: 320 PLS 322
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 46/372 (12%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 25 IVIANRGEIALRILRACKRL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 81
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 82 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 139
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 140 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 198
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPM 326
++ +A A+ ++ V +EK L + E++V+ D N + + CS++
Sbjct: 199 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR---- 254
Query: 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386
+ APA +T + + + + +IG G+ F +GE IEM
Sbjct: 255 --RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEM 309
Query: 387 NPRVSRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEP 435
N R+ + TG + K +++ G L + I + P +F P
Sbjct: 310 NTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLP 369
Query: 436 SIDYVVTKIPRF 447
S KI RF
Sbjct: 370 S----PGKITRF 377
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 167 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 226
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 227 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 280
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 281 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 339
Query: 972 SLN 974
L+
Sbjct: 340 PLS 342
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 46/372 (12%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 5 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 119
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 178
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPM 326
++ +A A+ ++ V +EK L + E++V+ D N + + CS++
Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR---- 234
Query: 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386
+ APA +T + + + + +IG G+ F +GE IEM
Sbjct: 235 --RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIEM 289
Query: 387 NPRVSRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEP 435
N R+ + TG + K +++ G L + I + P +F P
Sbjct: 290 NTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLP 349
Query: 436 SIDYVVTKIPRF 447
S KI RF
Sbjct: 350 S----PGKITRF 357
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 147 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206
Query: 856 AIEIDVDALADSCGNVVIGG----IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911
+++ LAD GN + M+ Q V P I+ I
Sbjct: 207 PRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEA------PAPGITPELRRYIGERC 260
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGK 971
K + G ++ + +G+ Y +E N R P G L K + +G+
Sbjct: 261 AKACVDIGYRGAGTFEF-LFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 319
Query: 972 SLN 974
L+
Sbjct: 320 PLS 322
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLI 849
G K + L A+ IG+P++++ S GG+ + + E P P+ +
Sbjct: 222 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFL 281
Query: 850 DKYLSDAIEIDVDALADSCGNVV-IGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTIS 908
K A ++V LAD GN V + G I++ + A P + + +
Sbjct: 282 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEA---PATIAPLAIFEFME 338
Query: 909 SWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944
I+LAK + +Y + G + LE NPR
Sbjct: 339 QCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 374
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 232 GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVL 291
G +DE + A IG FPL+I+ + GG G A + E+F + + + S +
Sbjct: 222 GCVKDVDEGLEAAERIG-FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIF 280
Query: 292 VEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEY 347
+ K + E++++ D N V + CSI+ V + T+AP +
Sbjct: 281 LMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPA-TIAPLAI-----F 334
Query: 348 QRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ + +I + + +G G+ V++ + DG +E+NPR+
Sbjct: 335 EFMEQCAIRLAKTVGYVSAGT-VEYLYSQ-DGSFHFLELNPRL 375
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLI 849
G K + L A+ IG+P++++ S GG+ + + E P P+ +
Sbjct: 228 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFL 287
Query: 850 DKYLSDAIEIDVDALADSCGNVV-IGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTIS 908
K A ++V LAD GN V + G I++ + A P + + +
Sbjct: 288 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEA---PATIAPLAIFEFME 344
Query: 909 SWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944
I+LAK + +Y + G + LE NPR
Sbjct: 345 QCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 380
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 232 GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVL 291
G +DE + A IG FPL+I+ + GG G A + E+F + + + S +
Sbjct: 228 GCVKDVDEGLEAAERIG-FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIF 286
Query: 292 VEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEY 347
+ K + E++++ D N V + CSI+ V + T+AP +
Sbjct: 287 LMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPA-TIAPLAI-----F 340
Query: 348 QRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ + +I + + +G G+ V++ + DG +E+NPR+
Sbjct: 341 EFMEQCAIRLAKTVGYVSAGT-VEYLYSQ-DGSFHFLELNPRL 381
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLI 849
G K + L A+ IG+P++++ S GG+ + + E P P+ +
Sbjct: 212 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFL 271
Query: 850 DKYLSDAIEIDVDALADSCGNVV-IGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTIS 908
K A ++V LAD GN V + G I++ + A P + + +
Sbjct: 272 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEA---PATIAPLAIFEFME 328
Query: 909 SWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944
I+LAK + +Y + G + LE NPR
Sbjct: 329 QCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 364
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 237 LDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSL 296
+DE + A IG FPL+I+ + GG G A + E+F + + + S + + K
Sbjct: 217 VDEGLEAAERIG-FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLA 275
Query: 297 LGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRD 352
+ E++++ D N V + CSI+ V + T+AP ++ +
Sbjct: 276 QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPA-TIAPLAI-----FEFMEQ 329
Query: 353 YSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+I + + +G G+ V++ + DG +E+NPR+
Sbjct: 330 CAIRLAKTVGYVSAGT-VEYLYSQ-DGSFHFLELNPRL 365
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLI 849
G K + L A+ IG+P++++ S GG+ + + E P P+ +
Sbjct: 228 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFL 287
Query: 850 DKYLSDAIEIDVDALADSCGNVV-IGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTIS 908
K A ++V LAD GN V + G I++ + A P + + +
Sbjct: 288 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEA---PATIAPLAIFEFME 344
Query: 909 SWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944
I+LAK + +Y + G + LE NPR
Sbjct: 345 QCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPR 380
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 232 GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVL 291
G +DE + A IG FPL+I+ + GG G A + E+F + + + S +
Sbjct: 228 GCVKDVDEGLEAAERIG-FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIF 286
Query: 292 VEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEY 347
+ K + E++++ D N V + CSI+ V + T+AP +
Sbjct: 287 LMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPA-TIAPLAI-----F 340
Query: 348 QRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRV 390
+ + +I + + +G G+ V++ + DG +E+NPR+
Sbjct: 341 EFMEQCAIRLAKTVGYVSAGT-VEYLYSQ-DGSFHFLELNPRL 381
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 147/372 (39%), Gaps = 46/372 (12%)
Query: 103 IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPEL---- 158
IVI E +ACK L G + + ++S+ + LAD T P +
Sbjct: 8 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 159 -VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLF 217
+ ++ + G L+ AE +E+ G IG K + I+ D+
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQ--VERSGFIFIGPKAETIRLMGDKVSA 122
Query: 218 KQAMKTIGVKTPPSG---IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
AMK GV P +G+ +D+ +IA IG +P+II+ + GG G + E
Sbjct: 123 IAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAEL 181
Query: 275 E---AICKAGLAASLTSQ-VLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPM 326
++ +A A+ ++ V +EK L + E++V+ D N + + CS++
Sbjct: 182 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR---- 237
Query: 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386
+ APA +T + + + + +IG G+ F +GE I+M
Sbjct: 238 --RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIKM 292
Query: 387 NPRVSRSSALASKATGFPIAKMAAKLSVGYSL-----------DQIPNDITKKTPASFEP 435
N R+ + TG + K +++ G L + I + P +F P
Sbjct: 293 NTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLP 352
Query: 436 SIDYVVTKIPRF 447
S KI RF
Sbjct: 353 S----PGKITRF 360
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLE----NAVEVDPERPVLIDKYLSD 855
AIAK IGYPV+++ S GGR M +V D L + A V ++KYL +
Sbjct: 150 AIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 209
Query: 856 AIEIDVDALADSCGNVV 872
+++ LAD GN +
Sbjct: 210 PRHVEIQVLADGQGNAI 226
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 148/375 (39%), Gaps = 37/375 (9%)
Query: 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY 150
+++ ILI G I + G +A E + + + A+I + +Y
Sbjct: 5 EIKSILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKARSSESY 64
Query: 151 ITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKK 210
+ ++ E + A+ P G + V + K+ ++ IG ++A
Sbjct: 65 LNIPAIIAAAEIAEAD---AIFPGYGFLSENQNFVEIC-----AKHNIKFIGPSVEAXNL 116
Query: 211 AEDRDLFKQAMKTIGVKTPPSGIGNT--LDECISIANEIGEFPLIIRPAFTLGGTGGGIA 268
D+ KQ + GV P G + +A EIG +P+I++ A GG G +
Sbjct: 117 XSDKSKAKQVXQRAGVPVIPGSDGALAGAEAAKKLAKEIG-YPVILKAAAGGGGRGXRVV 175
Query: 269 YNKEEFEAICKAGLAASLTS----QVLVEKSLLGWKEYELEVMRDLADNVVII----CSI 320
N+++ E + + + T+ EK + + E++V+ D NV+ + CS
Sbjct: 176 ENEKDLEKAYWSAESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSX 235
Query: 321 ENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGE 380
+ I +PA L +K RL + +I + IG E G +F V+ + +
Sbjct: 236 QR------RHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYE-GAGTFEFLVDK-NLD 287
Query: 381 VMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSL----------DQIPNDITKKTP 430
IE N R+ ++ +G I + K++ GY+L I IT +
Sbjct: 288 FYFIEXNTRLQVEHCVSEXVSGIDIIEQXIKVAEGYALPSQESIKLNGHSIECRITAEDS 347
Query: 431 ASFEPSIDYVVTKIP 445
+F PS + IP
Sbjct: 348 KTFLPSPGKITKYIP 362
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 789 GGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETL-VTYLENAVEVDP---E 844
G +A +EA A +AKEIGYPV+++ + GGR +V ++ L Y E +
Sbjct: 140 GALAGAEA-AKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSAESEAXTAFGD 198
Query: 845 RPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMI---------- 894
+KY+ + I+V + DS GNV +H G+ C
Sbjct: 199 GTXYXEKYIQNPRHIEVQVIGDSFGNV-------------IHVGERDCSXQRRHQKLIEE 245
Query: 895 -PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944
P + + IK AK + G ++ + + D Y +E N R
Sbjct: 246 SPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEXNTR 296
>pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Helicobacter Pylori
Length = 367
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 193 LEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPL 252
LE Y + IG +++A + ++ L K K +G+KT + N + ++ FP
Sbjct: 129 LEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPF 188
Query: 253 IIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYEL 304
I++P+ G+ G+ KEE E I A + +VL+E + G KEY L
Sbjct: 189 IVKPSN--AGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNL 238
>pdb|4FFL|A Chain A, Pylc In Complex With L-Lysine
pdb|4FFM|A Chain A, Pylc In Complex With L-Lysine-Ne-D-Ornithine
(Cocrystallized With L- Lysine-Ne-D-Ornithine)
pdb|4FFN|A Chain A, Pylc In Complex With D-Ornithine And Amppnp
pdb|4FFO|A Chain A, Pylc In Complex With Phosphorylated D-Ornithine
pdb|4FFP|A Chain A, Pylc In Complex With L-Lysine-Ne-D-Ornithine
(Cocrystallized With L- Lysine And D-Ornithine)
Length = 363
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 115 GTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLE-KERPDALLP 173
G +A K+ G +V+L++ NP ++ + AD Y + E E++LE +R DA+LP
Sbjct: 13 GFEAAYLSKKAGMKVVLVDKNPQALIRN--YADEFYCFDVIKE-PEKLLELSKRVDAVLP 69
Query: 174 TMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI 233
NLA + EK+ ++ +A + + D+ K K+IGV TP
Sbjct: 70 VNE-----NLACIEFLNSIKEKFSCPVL-FDFEAYRISRDKKKSKDYFKSIGVPTP---- 119
Query: 234 GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAI 277
+ + P ++P G I Y+ ++ E +
Sbjct: 120 ----------QDRPSKPPYFVKPPCESSSVGARIIYDDKDLEGL 153
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 53/328 (16%)
Query: 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILIN---SNPATIMTDPGLADRT 149
+KIL+LG+G + G + + G EV+ ++ + PA +A R+
Sbjct: 20 QKILLLGSGEL-----------GKEIAIEAQRLGVEVVAVDRYANAPAM-----QVAHRS 63
Query: 150 YI-TPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELI-GAKLDA 207
Y+ M + + V+E+E+PDA++P + A+NL AL E EK G ++ A+
Sbjct: 64 YVGNMMDKDFLWSVVEREKPDAIIPEI---EAINLD-ALFE---FEKDGYFVVPNARATW 116
Query: 208 IKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI 267
I +R L + +K V T TLDE +IG +P + + G G
Sbjct: 117 IAMHRER-LRETLVKEAKVPTSRYMYATTLDELYEACEKIG-YPCHTKAIMSSSGKGSYF 174
Query: 268 AYNKEEF-----EAICKAGLAASLTSQVLVEKSLLGWKEYELEV----MRDLADNVVIIC 318
E+ EA KA +A +++VE+ + ++++EV +R +N I+
Sbjct: 175 VKGPEDIPKAWEEAKTKARGSA---EKIIVEEHI----DFDVEVTELAVRHFDENGEIVT 227
Query: 319 SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVD 378
+ P+G + D A Q E Y IA + I GG + V
Sbjct: 228 TFPK--PVGHYQIDGDYHASWQPAEISEKAEREVYRIA--KRITDVLGGLGIFGVEMFVK 283
Query: 379 GE-VMVIEMNPRVSRSS--ALASKATGF 403
G+ V E++PR + LAS GF
Sbjct: 284 GDKVWANEVSPRPHDTGMVTLASHPPGF 311
>pdb|4FFR|A Chain A, Semet-Labeled Pylc (Remote)
Length = 363
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 115 GTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLE-KERPDALLP 173
G +A K+ G +V+L++ NP ++ + AD Y + E E++LE +R DA+LP
Sbjct: 13 GFEAAYLSKKAGXKVVLVDKNPQALIRN--YADEFYCFDVIKE-PEKLLELSKRVDAVLP 69
Query: 174 TMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI 233
NLA + EK+ ++ +A + + D+ K K+IGV TP
Sbjct: 70 VNE-----NLACIEFLNSIKEKFSCPVL-FDFEAYRISRDKKKSKDYFKSIGVPTP---- 119
Query: 234 GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAI 277
+ + P ++P G I Y+ ++ E +
Sbjct: 120 ----------QDRPSKPPYFVKPPCESSSVGARIIYDDKDLEGL 153
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 763 PDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAM 822
P+ I+A D+ + + + + QPK +A +AL + + GYPVV++P GR +
Sbjct: 80 PEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLL 139
Query: 823 EIVYTDETLVTYLENAVEV 841
V TD L EV
Sbjct: 140 AKV-TDRAAAEALLEHKEV 157
>pdb|2YVQ|A Chain A, Crystal Structure Of Mgs Domain Of Carbamoyl-Phosphate
Synthetase From Homo Sapiens
Length = 143
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 1026 AFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGI 1085
AF KA ++ G K+P G + + + +P +A+ + GFK+ +T T+ +L +
Sbjct: 10 AFLKAMLSTGFKIPQKG-ILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNV 68
Query: 1086 -AVERVLKMHEGR-PHAGD---MVANGQIQMMVITSSGDSLDQIDGLKLRRRGLAYKVPV 1140
A EG+ P ++ +G I +++ + ++ D +RR + +P+
Sbjct: 69 PATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPL 128
Query: 1141 ITTVSGALANAEAIR 1155
+T AEA++
Sbjct: 129 LTNFQVTKLFAEAVQ 143
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 21/231 (9%)
Query: 200 LIGAKLDAIKKAEDRDLFKQAMKTIGVK-TPPSGIGNTLDECISIANEIGEFPLIIRPAF 258
+G DAI+K + ++ + V P SG+ E +A ++ E+P++++
Sbjct: 131 FVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKL-EYPVMVKS-- 187
Query: 259 TLGGTGGGIAYNKEE------FEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLAD 312
T GG G G+ E FE + G + + V +E+ + + E+++M D
Sbjct: 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFG 247
Query: 313 NVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGS 368
+ I CS++ I PA L + ++R S + + +C G+
Sbjct: 248 KAIAIGERDCSLQR------RNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGT 301
Query: 369 NVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLD 419
V+F + E +E+N R+ + TG + + +++ S D
Sbjct: 302 -VEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPD 351
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 787 PKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDP--- 843
P G+ K +A +AK++ YPV+V+ + GG ++ V +++ + E
Sbjct: 161 PGSGLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYF 220
Query: 844 -ERPVLIDKYLSDAIEIDVDALADSCGNVVIGG 875
+ V +++++++A +++ + D G + G
Sbjct: 221 GDAGVFMERFVNNARHVEIQMMGDGFGKAIAIG 253
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETL-----VTYLENAVEVDPE 844
G+ K +A+ IA+EIGYPV+++ S GG+ M I + DE ++ E A +
Sbjct: 29 GVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDD 88
Query: 845 RPVLIDKYLSDAIEI 859
R +LI+K++ + I
Sbjct: 89 R-LLIEKFIDNPRHI 102
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 113 YSGTQACKALKEEGYEVILINSN---PATIMTDPGLADRTYITPMTPELVEQVLEKERPD 169
+S Q K K+EG+E I S+ P P +AD +I PE E++L
Sbjct: 11 HSALQILKGAKDEGFETIAFGSSKVKPLYTKYFP-VAD-YFIEEKYPE--EELLNLNA-- 64
Query: 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229
++PT G +L + L E+ + +G + + ++ DR+L ++ +K G++ P
Sbjct: 65 VVVPT--GSFVAHLGIELVENMKVPYFGNKRV------LRWESDRNLERKWLKKAGIRVP 116
Query: 230 PSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEF 274
E ++I E P+I++P GG G +A + E+F
Sbjct: 117 ---------EVYEDPDDI-EKPVIVKPHGAKGGKGYFLAKDPEDF 151
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 763 PDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAM 822
P+ I+A D+ + + + + QPK +A +AL + + GYPVV++P GR +
Sbjct: 80 PEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLL 139
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 763 PDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGR 820
P+ I+A D+ + + + + QPK +A +AL + + GYPVV++P GR
Sbjct: 80 PEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGR 137
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 804 EIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYL 853
++G+P+VV+P+ ++IVY + L++ LE E D E V+I+KY+
Sbjct: 131 KLGFPLVVKPNSGGSSVGVKIVYDKDELISXLETVFEWDSE--VVIEKYI 178
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 147 DRTYITPMTPELVEQVLEKERP-DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKL 205
++ I P+T ++EK + D L + G+ + V G LE G+ G+
Sbjct: 34 NKYEIVPITLNEKXDLIEKAKDIDFALLALHGKYGEDGTV----QGTLESLGIPYSGSNX 89
Query: 206 DAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISI--ANEIGEFPLIIRPAFTLGGT 263
+ D+++ K+ ++ G++TP I T E ++ +++G FPL+++P
Sbjct: 90 LSSGICXDKNISKKILRYEGIETP-DWIELTKXEDLNFDELDKLG-FPLVVKPNSGGSSV 147
Query: 264 GGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLG 298
G I Y+K+E I S+V++EK + G
Sbjct: 148 GVKIVYDKDEL--ISXLETVFEWDSEVVIEKYIKG 180
>pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
pdb|4EG0|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
Length = 317
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 14/155 (9%)
Query: 166 ERPDALLPTMGGQTALN-LAVALAESG----ALEKYGVELIGAKLDAIKKAEDRDLFKQA 220
ERP + L G A N L E+G AL+ YG+ G+ + D+ K
Sbjct: 55 ERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLV 114
Query: 221 MKTIGVKTPPSGIGNTLDECISIANEIGE---FPLIIRPAFTLGGTGGGIAYNKEEFEAI 277
+ GV TPP D+ + A +I PL ++PA G +A K +
Sbjct: 115 WQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPA----SEGSSVAVLKVKTADA 170
Query: 278 CKAGLAASLTSQ--VLVEKSLLGWKEYELEVMRDL 310
A L+ + T V+VEKS+ G EY + DL
Sbjct: 171 LPAALSEAATHDKIVIVEKSIEGGGEYTACIAGDL 205
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 218 KQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTG--GGI-------- 267
K+ + GV PP + T +E IA E G+ ++I+ +GG G GG+
Sbjct: 9 KEILARYGVPVPPGKVAYTPEEAKRIAEEFGK-RVVIKAQVHVGGRGKAGGVKLADTPQE 67
Query: 268 AYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318
AY E+ +AI + +VLV +++ KEY ++ D A V++
Sbjct: 68 AY--EKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLM 116
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 218 KQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIR 255
KQ +K G+ P + TLDE + A EIG +P++++
Sbjct: 26 KQVLKAYGLPVPEEKLAKTLDEALEYAKEIG-YPVVLK 62
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 778 IIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVR 812
++K + P+ +AK+ +AL AKEIGYPVV++
Sbjct: 28 VLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLK 62
>pdb|3VMM|A Chain A, Crystal Structure Of Bacd, An L-Amino Acid Dipeptide
Ligase From Bacillus Subtilis
Length = 474
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 192 ALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251
A E+ G L GA + A + A D++ + A GVK+ + TL++ + EIG P
Sbjct: 120 ACERLG--LRGAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGT-P 176
Query: 252 LIIRPAFTLGGTG 264
LI++P + G
Sbjct: 177 LILKPTYLASSIG 189
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 20/181 (11%)
Query: 799 LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIE 858
LA +G PV+V+PS M V + L L A + D E VLI+K+LS E
Sbjct: 131 LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE--VLIEKWLSGP-E 187
Query: 859 IDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKT-------ISSSCLDTISSWT 911
V L G ++ I I+ +G A + +T + +S + +
Sbjct: 188 FTVAIL----GEEILPSI--RIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALV 967
+K L G + + G YLLEAN T VP ++ G ++ +
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301
Query: 968 M 968
+
Sbjct: 302 L 302
>pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
Ligase (Ddl) From Streptococcus Mutans
pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
Ligase (Ddl) From Streptococcus Mutans
Length = 383
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 795 EADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS 854
E+ + +++ YPV V+P+ + G ++ I + A+ + + VLI++ +
Sbjct: 190 ESKLAEVEEKLIYPVFVKPANM--GSSVGISKAENRTDLKQAIALALKYDSRVLIEQGV- 246
Query: 855 DAIEIDVDALADS-CGNVVIGGIMEHIE----QAGVHSGDSACMIPTKTISSSCLDTISS 909
DA EI+V L ++ + G I++ + +A IP + I ++ +
Sbjct: 247 DAREIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRD 305
Query: 910 WTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPL 960
+ + L CGL C + +T G VYL E N T+P ++ +PL
Sbjct: 306 YAATAFRTLGCCGLSRCDFFLTEDGKVYLNELN-----TMPGFTQWSMYPL 351
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP---ATIMTDPGLA 146
++ ++L++GAG +G A A K+ G VIL++ P M G
Sbjct: 119 SETTQVLVVGAGS-----------AGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGM 167
Query: 147 DRTYITPMTPELVEQVLEKERPDALLPTMGG--QTALNLAVALAESGALEKYGVELIGAK 204
+ T VE +E DA+ GG Q + L LAE A +E +GA
Sbjct: 168 NAVGTKQQTAHGVEDKVEWFIEDAM---KGGRQQNDIKLVTILAEQSADGVQWLESLGAN 224
Query: 205 LDAIKKA 211
LD +K++
Sbjct: 225 LDDLKRS 231
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 20/181 (11%)
Query: 799 LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIE 858
LA +G PV+V+PS M V + L L A + D E VLI+K+LS E
Sbjct: 131 LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE--VLIEKWLSGP-E 187
Query: 859 IDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKT-------ISSSCLDTISSWT 911
V L G ++ I I+ +G A + +T + +S + +
Sbjct: 188 FTVAIL----GEEILPSI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241
Query: 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALV 967
+K L G + + G YLLEAN T VP ++ G ++ +
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301
Query: 968 M 968
+
Sbjct: 302 L 302
>pdb|4EGJ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
pdb|4EGJ|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
pdb|4EGJ|C Chain C, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
pdb|4EGJ|D Chain D, Crystal Structure Of D-Alanine-D-Alanine Ligase From
Burkholderia Xenovorans
Length = 334
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 166 ERPDALLPTMGGQTALN-LAVALAESG----ALEKYGVELIGAKLDAIKKAEDRDLFKQA 220
ERP A L G A N L E+G AL+ YG+ G+ + D+ K
Sbjct: 72 ERPLAALKEEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLV 131
Query: 221 MKTIGVKTPPSGIGNTLDECISIANEIGE---FPLIIRPAFTLGGTGGGIAYNKEEFEAI 277
+ +G+ TPP D+ + A EI PL ++PA G +A K +
Sbjct: 132 WQQLGIPTPPFEAVLRGDDYEARAKEIVAKLGLPLFVKPA----SEGSSVAVIKVKSADA 187
Query: 278 CKAGL--AASLTSQVLVEKSLLGWKEY 302
A L A V+VEKS+ G EY
Sbjct: 188 LPAALIEAVKFDRIVVVEKSIEGGGEY 214
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 350 LRDYSIAIIREIGVECGGSNVQFA--VNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407
+R+YS +++ E+G CG S V+ A + P ++ +EMNP +A+ + F +
Sbjct: 54 IREYSPSLVLELGAYCGYSAVRMARLLQP-GARLLTMEMNPDY---AAITQQMLNFAGLQ 109
Query: 408 MAAKLSVGYSLDQIPN 423
+ G S D IP
Sbjct: 110 DKVTILNGASQDLIPQ 125
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 350 LRDYSIAIIREIGVECGGSNVQFA--VNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407
++++ +++ E+G CG S V+ A ++P ++ IE+NP +A+ + F K
Sbjct: 53 IQEHQPSVLLELGAYCGYSAVRMARLLSP-GARLITIEINP---DCAAITQRMVDFAGVK 108
Query: 408 MAAKLSVGYSLDQIPN 423
L VG S D IP
Sbjct: 109 DKVTLVVGASQDIIPQ 124
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 350 LRDYSIAIIREIGVECGGSNVQFA--VNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407
++++ +++ E+G CG S V+ A ++P ++ IE+NP +A+ + F K
Sbjct: 56 IQEHQPSVLLELGAYCGYSAVRMARLLSP-GARLITIEINP---DCAAITQRMVDFAGVK 111
Query: 408 MAAKLSVGYSLDQIPN 423
L VG S D IP
Sbjct: 112 DKVTLVVGASQDIIPQ 127
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 350 LRDYSIAIIREIGVECGGSNVQFA--VNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407
+R+YS +++ E+G CG S V+ A + P ++ +EMNP +A+ + F +
Sbjct: 56 IREYSPSLVLELGAYCGYSAVRMARLLQP-GARLLTMEMNPDY---AAITQQMLNFAGLQ 111
Query: 408 MAAKLSVGYSLDQIPN 423
+ G S D IP
Sbjct: 112 DKVTILNGASQDLIPQ 127
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 802 AKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDP----ERPVLIDKYLSDAI 857
A IGYPV+++ + GG+ M++V + L L +A + +L++KYL
Sbjct: 154 AGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPR 213
Query: 858 EIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCLDT 906
+++ AD G+ ++ + C I P + +
Sbjct: 214 HVEIQVFADRHGHC-------------LYLNERDCSIQRRHQKVVEEAPAPGLGAELRRA 260
Query: 907 ISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAAL 966
+ ++ A+ + G ++ + G + +E N R P G L +
Sbjct: 261 MGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIR 320
Query: 967 VMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQG 1001
V G++L T+E +P + E L E +G
Sbjct: 321 VARGEALP---LTQEQVPLNGHAIEVRLYAEDPEG 352
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 93/241 (38%), Gaps = 24/241 (9%)
Query: 194 EKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP-SGIGNTLDECISIANEIGEFPL 252
EKY I AI+ +DR K+ +K+ G K P + + D I A E +P
Sbjct: 94 EKYN---IPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTD--IDKAIETLGYPF 148
Query: 253 IIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLAD 312
I++ F G + N E+ + G TS+ + EK L KE L V R +
Sbjct: 149 IVKTRFGGYDGKGQVLINNEK---DLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNN 205
Query: 313 NVVIICSIENVDPMGVHTGDSI--TVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNV 370
+ EN H + T+ PA+ E + + I I IG V
Sbjct: 206 QITFFPLQEN-----EHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGT----FTV 256
Query: 371 QFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTP 430
+F ++ + ++ V E+ PR S + +A + G SL PN I P
Sbjct: 257 EFFIDS-NNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSL---PNSIELLKP 312
Query: 431 A 431
A
Sbjct: 313 A 313
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 84 QKLGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVIL------INSNPA 137
+K + + +LI+GAGP SG++A + L E GY V L I +
Sbjct: 381 EKFRQTKNKDSVLIVGAGP-----------SGSEAARVLMESGYTVHLTDTAEKIGGHLN 429
Query: 138 TIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171
+ PGL + +Y + ++L+K + L
Sbjct: 430 QVAALPGLGEWSYHRDYRETQITKLLKKNKESQL 463
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 84 QKLGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVIL------INSNPA 137
+K + + +LI+GAGP SG++A + L E GY V L I +
Sbjct: 381 EKFRQTKNKDSVLIVGAGP-----------SGSEAARVLMESGYTVHLTDTAEKIGGHLN 429
Query: 138 TIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171
+ PGL + +Y + ++L+K + L
Sbjct: 430 QVAALPGLGEWSYHRDYRETQITKLLKKNKESQL 463
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 350 LRDYSIAIIREIGVECGGSNVQFA--VNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407
++++ +++ E+G CG S V+ A ++P ++ IE+NP +A+ + F K
Sbjct: 53 IQEHQPSVLLELGAYCGYSAVRMARLLSP-GARLITIEINP---DCAAITQRMVDFAGMK 108
Query: 408 MAAKLSVGYSLDQIPN 423
L VG S D IP
Sbjct: 109 DKVTLVVGASQDIIPQ 124
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVT----YLENAVEVDPERPVLIDKY 852
+A A +E G P+V++ + G+ + + T+E + +LE+ D V+I++Y
Sbjct: 128 EAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEY 187
Query: 853 LS 854
LS
Sbjct: 188 LS 189
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVT----YLENAVEVDPERPVLIDKY 852
+A A +E G P+V++ + G+ + + T+E + +LE+ D V+I++Y
Sbjct: 128 EAKAYVQEKGAPIVIKADGLAAGKGVTVAXTEEEAIACLHDFLEDEKFGDASASVVIEEY 187
Query: 853 LS 854
LS
Sbjct: 188 LS 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,836,493
Number of Sequences: 62578
Number of extensions: 1420247
Number of successful extensions: 4116
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3932
Number of HSP's gapped (non-prelim): 129
length of query: 1190
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1080
effective length of database: 8,089,757
effective search space: 8736937560
effective search space used: 8736937560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)