Query 001014
Match_columns 1190
No_of_seqs 962 out of 6344
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02735 carbamoyl-phosphate s 100.0 2E-205 4E-210 1956.3 125.7 1086 86-1171 17-1102(1102)
2 PRK12815 carB carbamoyl phosph 100.0 3E-193 6E-198 1856.6 123.6 1059 86-1171 1-1063(1068)
3 TIGR01369 CPSaseII_lrg carbamo 100.0 8E-192 2E-196 1843.3 124.6 1048 87-1154 1-1050(1050)
4 PRK05294 carB carbamoyl phosph 100.0 1E-190 3E-195 1840.8 122.5 1065 86-1171 1-1066(1066)
5 KOG0370 Multifunctional pyrimi 100.0 8E-190 2E-194 1620.0 59.4 1031 91-1156 376-1407(1435)
6 COG0458 CarB Carbamoylphosphat 100.0 1.6E-75 3.4E-80 646.5 38.6 393 98-493 1-393 (400)
7 PLN02735 carbamoyl-phosphate s 100.0 9.8E-60 2.1E-64 607.1 43.8 396 635-1037 15-421 (1102)
8 COG0458 CarB Carbamoylphosphat 100.0 1.4E-58 3E-63 511.9 34.2 380 649-1036 1-389 (400)
9 PRK12815 carB carbamoyl phosph 100.0 7.6E-55 1.6E-59 565.4 40.2 390 641-1037 5-403 (1068)
10 PRK05294 carB carbamoyl phosph 100.0 3.5E-53 7.7E-58 552.5 45.7 381 91-490 553-933 (1066)
11 TIGR01369 CPSaseII_lrg carbamo 100.0 1.1E-52 2.5E-57 545.2 47.5 380 91-489 553-932 (1050)
12 KOG0370 Multifunctional pyrimi 100.0 3.3E-51 7.1E-56 473.8 15.7 387 641-1036 375-770 (1435)
13 PRK08654 pyruvate carboxylase 100.0 2.1E-45 4.6E-50 440.9 43.2 396 92-517 2-429 (499)
14 COG4770 Acetyl/propionyl-CoA c 100.0 4.6E-46 9.9E-51 418.1 32.9 386 91-517 1-430 (645)
15 TIGR00514 accC acetyl-CoA carb 100.0 2.2E-44 4.7E-49 432.5 45.0 396 92-518 2-431 (449)
16 PRK07178 pyruvate carboxylase 100.0 1.8E-44 3.8E-49 433.9 44.0 398 92-518 2-430 (472)
17 PRK12833 acetyl-CoA carboxylas 100.0 4.2E-44 9.1E-49 430.0 44.7 395 86-517 1-433 (467)
18 PRK05586 biotin carboxylase; V 100.0 6.9E-44 1.5E-48 427.5 44.5 396 92-518 2-431 (447)
19 PRK08463 acetyl-CoA carboxylas 100.0 1E-43 2.2E-48 427.4 44.7 397 92-517 2-430 (478)
20 PRK08462 biotin carboxylase; V 100.0 3.1E-43 6.6E-48 422.8 45.0 399 91-518 3-431 (445)
21 PRK08591 acetyl-CoA carboxylas 100.0 6.4E-43 1.4E-47 421.3 46.3 395 92-517 2-430 (451)
22 KOG0238 3-Methylcrotonyl-CoA c 100.0 2.7E-43 5.9E-48 388.0 33.0 386 95-517 1-427 (670)
23 COG1038 PycA Pyruvate carboxyl 100.0 4.5E-43 9.7E-48 402.6 33.9 390 91-517 6-443 (1149)
24 COG0439 AccC Biotin carboxylas 100.0 3E-42 6.5E-47 398.0 41.1 393 92-517 2-430 (449)
25 PRK12999 pyruvate carboxylase; 100.0 2.4E-41 5.2E-46 435.6 44.8 394 91-517 4-441 (1146)
26 TIGR01235 pyruv_carbox pyruvat 100.0 1.9E-41 4E-46 433.7 43.1 392 94-518 1-438 (1143)
27 PRK06111 acetyl-CoA carboxylas 100.0 1.8E-40 3.9E-45 400.4 45.7 399 92-519 2-431 (450)
28 PRK06019 phosphoribosylaminoim 100.0 3.3E-41 7.1E-46 394.5 35.8 354 643-1035 2-366 (372)
29 COG4770 Acetyl/propionyl-CoA c 100.0 3.8E-41 8.3E-46 378.6 31.5 389 643-1082 2-424 (645)
30 COG0026 PurK Phosphoribosylami 100.0 5.4E-41 1.2E-45 367.4 30.6 352 643-1033 1-364 (375)
31 PRK07178 pyruvate carboxylase 100.0 3E-40 6.4E-45 397.3 39.9 323 643-994 2-339 (472)
32 PRK08654 pyruvate carboxylase 100.0 1.9E-40 4E-45 398.2 37.8 323 643-994 2-339 (499)
33 TIGR00514 accC acetyl-CoA carb 100.0 2.3E-40 4.9E-45 397.7 38.6 366 643-1036 2-409 (449)
34 PLN02948 phosphoribosylaminoim 100.0 6.5E-40 1.4E-44 398.3 41.0 393 641-1069 20-439 (577)
35 PRK06019 phosphoribosylaminoim 100.0 6.9E-40 1.5E-44 383.3 39.2 355 92-488 2-366 (372)
36 PRK05586 biotin carboxylase; V 100.0 1.8E-39 3.8E-44 389.5 38.5 306 643-975 2-323 (447)
37 PRK08463 acetyl-CoA carboxylas 100.0 1.6E-39 3.4E-44 391.2 37.7 323 643-994 2-340 (478)
38 TIGR02712 urea_carbox urea car 100.0 2.1E-38 4.6E-43 410.8 48.5 398 92-517 1-429 (1201)
39 PRK12833 acetyl-CoA carboxylas 100.0 9.7E-39 2.1E-43 383.7 41.9 326 640-994 2-343 (467)
40 KOG0369 Pyruvate carboxylase [ 100.0 1.7E-39 3.7E-44 365.1 31.6 385 93-518 34-467 (1176)
41 PRK08591 acetyl-CoA carboxylas 100.0 1.2E-38 2.6E-43 384.2 41.5 306 643-975 2-323 (451)
42 TIGR01142 purT phosphoribosylg 100.0 1.2E-38 2.6E-43 376.4 40.1 362 94-488 1-375 (380)
43 PF02787 CPSase_L_D3: Carbamoy 100.0 1.7E-41 3.6E-46 325.5 12.4 123 509-632 1-123 (123)
44 PLN02948 phosphoribosylaminoim 100.0 1.5E-38 3.2E-43 386.4 39.9 364 90-488 20-397 (577)
45 KOG0238 3-Methylcrotonyl-CoA c 100.0 3.4E-39 7.3E-44 355.8 30.3 384 646-1082 1-421 (670)
46 PRK08462 biotin carboxylase; V 100.0 3.3E-38 7.1E-43 379.2 41.1 308 642-975 3-325 (445)
47 COG1038 PycA Pyruvate carboxyl 100.0 6.1E-39 1.3E-43 368.7 32.2 393 642-1082 6-437 (1149)
48 TIGR01161 purK phosphoribosyla 100.0 7.5E-39 1.6E-43 373.2 33.7 340 645-1022 1-352 (352)
49 TIGR01142 purT phosphoribosylg 100.0 2.5E-38 5.4E-43 373.7 37.0 358 645-1035 1-375 (380)
50 PRK09288 purT phosphoribosylgl 100.0 8.3E-38 1.8E-42 371.2 36.9 361 642-1035 11-388 (395)
51 PRK06111 acetyl-CoA carboxylas 100.0 2.1E-37 4.6E-42 373.7 39.3 366 643-1036 2-408 (450)
52 PRK09288 purT phosphoribosylgl 100.0 5E-37 1.1E-41 364.5 41.4 364 91-488 11-388 (395)
53 TIGR01161 purK phosphoribosyla 100.0 1.4E-37 3E-42 362.6 34.9 345 94-475 1-352 (352)
54 COG0027 PurT Formate-dependent 100.0 2.3E-37 5E-42 324.6 31.0 360 642-1036 11-389 (394)
55 COG0439 AccC Biotin carboxylas 100.0 5.5E-37 1.2E-41 354.4 34.8 364 643-1035 2-408 (449)
56 KOG0369 Pyruvate carboxylase [ 100.0 1.5E-37 3.3E-42 349.5 28.9 432 643-1118 33-510 (1176)
57 TIGR01235 pyruv_carbox pyruvat 100.0 6.3E-37 1.4E-41 392.2 37.5 323 645-994 1-346 (1143)
58 COG0026 PurK Phosphoribosylami 100.0 3.5E-36 7.5E-41 329.7 36.8 353 93-486 2-364 (375)
59 PRK06395 phosphoribosylamine-- 100.0 4.2E-36 9.1E-41 355.6 40.3 385 643-1066 2-433 (435)
60 PRK12999 pyruvate carboxylase; 100.0 2.3E-36 5E-41 389.5 39.2 366 643-1035 5-419 (1146)
61 TIGR02712 urea_carbox urea car 100.0 6.2E-36 1.3E-40 387.8 41.3 366 644-1036 2-408 (1201)
62 PRK06395 phosphoribosylamine-- 100.0 6.1E-35 1.3E-39 345.7 42.4 368 92-488 2-405 (435)
63 PRK13789 phosphoribosylamine-- 100.0 4.9E-35 1.1E-39 345.6 41.3 376 93-494 5-415 (426)
64 PRK00885 phosphoribosylamine-- 100.0 4E-35 8.6E-40 349.9 40.4 375 93-493 1-406 (420)
65 COG0027 PurT Formate-dependent 100.0 2.8E-35 6.2E-40 308.9 31.9 366 91-488 11-388 (394)
66 PF02786 CPSase_L_D2: Carbamoy 100.0 1.2E-35 2.5E-40 316.1 22.6 203 771-975 1-210 (211)
67 TIGR00877 purD phosphoribosyla 100.0 7.1E-34 1.5E-38 340.1 39.5 376 93-494 1-411 (423)
68 PRK07206 hypothetical protein; 100.0 1.6E-33 3.4E-38 336.8 42.3 372 91-488 1-406 (416)
69 PRK13789 phosphoribosylamine-- 100.0 6E-34 1.3E-38 336.4 37.0 379 643-1052 4-423 (426)
70 PRK05784 phosphoribosylamine-- 100.0 7.1E-33 1.5E-37 329.8 45.0 378 93-494 1-435 (486)
71 PF02786 CPSase_L_D2: Carbamoy 100.0 8.2E-35 1.8E-39 309.5 24.3 204 213-420 1-210 (211)
72 PRK05784 phosphoribosylamine-- 100.0 8.5E-33 1.8E-37 329.1 41.4 412 645-1093 2-477 (486)
73 PLN02257 phosphoribosylamine-- 100.0 1.2E-32 2.5E-37 325.3 42.2 374 96-494 1-414 (434)
74 PRK00885 phosphoribosylamine-- 100.0 4.6E-33 1E-37 332.1 38.4 375 645-1052 2-415 (420)
75 TIGR00877 purD phosphoribosyla 100.0 5.5E-33 1.2E-37 332.4 39.1 374 645-1052 2-419 (423)
76 PRK02186 argininosuccinate lya 100.0 1.7E-32 3.7E-37 353.0 45.5 370 93-488 3-390 (887)
77 PRK14569 D-alanyl-alanine synt 100.0 1.3E-32 2.9E-37 311.7 34.5 281 92-412 3-291 (296)
78 PRK12767 carbamoyl phosphate s 100.0 2.5E-32 5.4E-37 315.9 34.9 290 92-420 1-299 (326)
79 COG0151 PurD Phosphoribosylami 100.0 2.3E-31 5.1E-36 295.7 40.1 371 93-494 1-412 (428)
80 PRK01966 ddl D-alanyl-alanine 100.0 2.8E-32 6.1E-37 314.3 31.5 303 92-412 3-327 (333)
81 COG0151 PurD Phosphoribosylami 100.0 1.2E-31 2.5E-36 298.1 34.1 378 645-1056 2-424 (428)
82 PRK13790 phosphoribosylamine-- 100.0 2.5E-31 5.5E-36 311.1 38.4 330 151-493 11-364 (379)
83 PLN02257 phosphoribosylamine-- 100.0 1.2E-31 2.5E-36 316.9 35.4 374 647-1053 1-423 (434)
84 PRK12767 carbamoyl phosphate s 100.0 6.2E-32 1.3E-36 312.6 31.4 287 644-975 2-299 (326)
85 PRK14572 D-alanyl-alanine synt 100.0 2.2E-31 4.8E-36 308.4 34.4 303 93-412 2-341 (347)
86 PRK01372 ddl D-alanine--D-alan 100.0 5.1E-31 1.1E-35 301.7 35.2 284 92-412 4-296 (304)
87 TIGR01205 D_ala_D_alaTIGR D-al 100.0 3.5E-31 7.5E-36 304.8 33.7 293 94-412 1-311 (315)
88 PRK14568 vanB D-alanine--D-lac 100.0 3.4E-31 7.3E-36 306.7 33.3 302 92-411 3-335 (343)
89 PRK07206 hypothetical protein; 100.0 8.9E-31 1.9E-35 313.0 36.4 301 643-973 2-318 (416)
90 PRK14570 D-alanyl-alanine synt 100.0 5.4E-31 1.2E-35 304.6 33.2 302 92-412 2-342 (364)
91 PRK13790 phosphoribosylamine-- 100.0 6.7E-31 1.5E-35 307.5 33.0 328 704-1052 13-373 (379)
92 PRK14571 D-alanyl-alanine synt 100.0 8.3E-30 1.8E-34 290.4 35.3 273 94-409 2-288 (299)
93 PRK02186 argininosuccinate lya 100.0 1.1E-29 2.3E-34 327.1 38.8 359 643-1035 2-390 (887)
94 PRK14569 D-alanyl-alanine synt 100.0 2E-29 4.4E-34 285.8 30.2 280 643-968 3-292 (296)
95 PF15632 ATPgrasp_Ter: ATP-gra 100.0 1.7E-29 3.6E-34 282.7 28.9 278 666-976 11-311 (329)
96 KOG0368 Acetyl-CoA carboxylase 100.0 1.3E-29 2.9E-34 305.0 29.0 379 90-493 52-519 (2196)
97 PRK14573 bifunctional D-alanyl 100.0 1.2E-28 2.5E-33 315.9 35.1 303 91-411 450-781 (809)
98 PF15632 ATPgrasp_Ter: ATP-gra 100.0 4.4E-28 9.6E-33 271.3 32.6 278 115-421 11-311 (329)
99 TIGR01205 D_ala_D_alaTIGR D-al 100.0 1.2E-28 2.7E-33 283.6 29.1 292 645-968 1-312 (315)
100 PRK01372 ddl D-alanine--D-alan 100.0 4.8E-28 1E-32 277.2 31.5 284 642-968 3-297 (304)
101 PRK06849 hypothetical protein; 100.0 7.9E-29 1.7E-33 292.9 25.6 274 642-953 3-284 (389)
102 PRK01966 ddl D-alanyl-alanine 100.0 3.7E-28 8E-33 280.2 28.8 300 643-968 3-328 (333)
103 PRK06849 hypothetical protein; 100.0 8.3E-28 1.8E-32 284.3 28.2 271 92-397 4-283 (389)
104 PRK14568 vanB D-alanine--D-lac 100.0 1.6E-27 3.4E-32 276.1 29.4 301 643-968 3-337 (343)
105 PRK14572 D-alanyl-alanine synt 100.0 4.7E-27 1E-31 272.4 30.7 301 644-968 2-342 (347)
106 PRK14570 D-alanyl-alanine synt 100.0 1.3E-26 2.8E-31 268.2 30.5 301 643-968 2-343 (364)
107 PRK06524 biotin carboxylase-li 100.0 7.9E-27 1.7E-31 270.9 27.9 245 158-419 95-356 (493)
108 PRK14571 D-alanyl-alanine synt 100.0 2.4E-26 5.2E-31 261.9 30.6 274 645-967 2-291 (299)
109 KOG0368 Acetyl-CoA carboxylase 99.9 1.7E-26 3.7E-31 278.5 27.2 355 642-1033 53-511 (2196)
110 PRK14573 bifunctional D-alanyl 99.9 7E-26 1.5E-30 290.3 31.6 304 642-968 450-783 (809)
111 PRK06524 biotin carboxylase-li 99.9 4.3E-26 9.3E-31 264.8 25.8 245 708-974 94-356 (493)
112 KOG0237 Glycinamide ribonucleo 99.9 8.3E-25 1.8E-29 245.8 32.8 375 93-493 3-415 (788)
113 PF02222 ATP-grasp: ATP-grasp 99.9 5.7E-25 1.2E-29 225.4 19.9 170 779-956 1-172 (172)
114 COG1181 DdlA D-alanine-D-alani 99.9 2.4E-23 5.3E-28 233.9 28.3 290 93-412 3-312 (317)
115 PRK10446 ribosomal protein S6 99.9 4.7E-23 1E-27 234.7 30.9 278 94-415 2-288 (300)
116 PF13535 ATP-grasp_4: ATP-gras 99.9 5.7E-24 1.2E-28 224.8 19.3 180 768-949 1-183 (184)
117 PF13535 ATP-grasp_4: ATP-gras 99.9 8.6E-24 1.9E-28 223.5 19.3 181 210-394 1-183 (184)
118 PRK13278 purP 5-formaminoimida 99.9 2E-22 4.3E-27 229.7 29.0 268 644-951 19-319 (358)
119 TIGR00768 rimK_fam alpha-L-glu 99.9 3.3E-22 7.2E-27 225.9 30.4 262 112-412 10-276 (277)
120 COG2232 Predicted ATP-dependen 99.9 2.2E-22 4.7E-27 214.0 24.9 294 642-998 10-321 (389)
121 COG2232 Predicted ATP-dependen 99.9 3.9E-22 8.5E-27 212.1 26.8 341 92-488 11-370 (389)
122 PRK10446 ribosomal protein S6 99.9 2.9E-22 6.2E-27 228.3 27.5 278 645-972 2-290 (300)
123 TIGR00768 rimK_fam alpha-L-glu 99.9 1.7E-22 3.7E-27 228.3 24.2 261 663-967 10-276 (277)
124 PRK13278 purP 5-formaminoimida 99.9 1.5E-21 3.2E-26 222.5 31.7 266 92-393 18-315 (358)
125 KOG0237 Glycinamide ribonucleo 99.9 2.4E-21 5.2E-26 218.3 29.8 302 644-971 3-322 (788)
126 TIGR02144 LysX_arch Lysine bio 99.9 2.9E-21 6.3E-26 218.6 30.2 260 113-414 10-276 (280)
127 PF02222 ATP-grasp: ATP-grasp 99.9 4.1E-22 8.9E-27 204.4 20.6 170 221-401 1-172 (172)
128 PRK13277 5-formaminoimidazole- 99.9 1.2E-21 2.6E-26 218.5 25.1 288 644-974 18-349 (366)
129 PRK13277 5-formaminoimidazole- 99.9 2E-21 4.3E-26 216.8 25.8 293 92-419 17-349 (366)
130 TIGR02144 LysX_arch Lysine bio 99.9 4.7E-21 1E-25 216.9 26.0 262 664-970 10-277 (280)
131 PF07478 Dala_Dala_lig_C: D-al 99.9 6E-21 1.3E-25 203.0 21.4 184 220-412 1-201 (203)
132 PF07478 Dala_Dala_lig_C: D-al 99.9 4.8E-21 1E-25 203.8 19.4 186 778-968 1-202 (203)
133 PF01071 GARS_A: Phosphoribosy 99.9 4.2E-20 9.2E-25 190.8 21.0 175 212-392 1-191 (194)
134 cd01424 MGS_CPS_II Methylglyox 99.8 6.3E-21 1.4E-25 183.1 12.8 109 1042-1151 1-109 (110)
135 cd00532 MGS-like MGS-like doma 99.8 6.7E-21 1.5E-25 183.0 12.5 105 1044-1149 2-111 (112)
136 PF01071 GARS_A: Phosphoribosy 99.8 7.6E-20 1.6E-24 188.9 20.1 175 771-947 2-191 (194)
137 COG1181 DdlA D-alanine-D-alani 99.8 3.6E-19 7.8E-24 200.3 26.7 291 644-968 3-313 (317)
138 cd01423 MGS_CPS_I_III Methylgl 99.8 1.2E-20 2.7E-25 182.9 9.7 110 1043-1152 2-116 (116)
139 PRK05234 mgsA methylglyoxal sy 99.8 3.7E-20 8E-25 183.3 12.8 112 1043-1156 6-125 (142)
140 cd01422 MGS Methylglyoxal synt 99.8 7.3E-20 1.6E-24 175.6 11.6 103 1048-1151 6-115 (115)
141 COG3919 Predicted ATP-grasp en 99.8 1.7E-19 3.6E-24 188.5 14.4 296 644-971 4-313 (415)
142 PF02655 ATP-grasp_3: ATP-gras 99.8 1.7E-19 3.6E-24 185.7 10.8 160 211-393 1-161 (161)
143 COG3919 Predicted ATP-grasp en 99.8 8.2E-19 1.8E-23 183.4 15.4 294 94-416 5-313 (415)
144 PF02655 ATP-grasp_3: ATP-gras 99.8 2.7E-19 5.9E-24 184.1 10.3 159 769-948 1-161 (161)
145 COG0189 RimK Glutathione synth 99.8 3.7E-17 8E-22 184.7 23.7 277 664-968 17-311 (318)
146 COG0189 RimK Glutathione synth 99.8 8.5E-17 1.9E-21 181.8 25.8 280 113-413 17-311 (318)
147 PF08443 RimK: RimK-like ATP-g 99.7 1.4E-16 3.1E-21 168.8 19.4 181 211-412 1-189 (190)
148 PF08443 RimK: RimK-like ATP-g 99.7 8.6E-17 1.9E-21 170.5 16.7 182 769-967 1-189 (190)
149 TIGR03103 trio_acet_GNAT GNAT- 99.7 3.1E-15 6.8E-20 182.2 29.5 230 157-413 245-540 (547)
150 smart00851 MGS MGS-like domain 99.7 3.4E-17 7.5E-22 151.0 8.7 87 1056-1142 2-90 (90)
151 PRK12458 glutathione synthetas 99.7 6.2E-15 1.3E-19 169.6 27.7 278 112-413 10-321 (338)
152 PRK14016 cyanophycin synthetas 99.7 5E-15 1.1E-19 186.2 25.8 242 148-412 155-470 (727)
153 PF02142 MGS: MGS-like domain 99.7 4.4E-17 9.6E-22 151.7 5.1 87 1056-1142 2-95 (95)
154 TIGR03103 trio_acet_GNAT GNAT- 99.7 5.8E-15 1.3E-19 179.9 24.4 238 707-968 244-540 (547)
155 PRK14016 cyanophycin synthetas 99.6 8.3E-15 1.8E-19 184.3 23.6 235 706-969 161-472 (727)
156 PLN02941 inositol-tetrakisphos 99.6 1.2E-13 2.7E-18 155.6 26.7 239 109-392 32-308 (328)
157 COG1821 Predicted ATP-utilizin 99.6 1.1E-14 2.4E-19 150.3 16.5 188 191-415 93-281 (307)
158 PRK02471 bifunctional glutamat 99.6 6.1E-14 1.3E-18 175.5 26.1 181 204-393 479-729 (752)
159 COG1821 Predicted ATP-utilizin 99.6 6.9E-15 1.5E-19 151.9 14.4 182 756-972 99-283 (307)
160 PRK12458 glutathione synthetas 99.6 9.3E-14 2E-18 159.9 25.1 280 663-970 10-323 (338)
161 PRK02471 bifunctional glutamat 99.6 1E-13 2.2E-18 173.6 25.2 197 762-967 479-749 (752)
162 TIGR01380 glut_syn glutathione 99.6 2E-13 4.4E-18 155.9 25.3 276 113-413 18-308 (312)
163 TIGR01435 glu_cys_lig_rel glut 99.6 1E-13 2.2E-18 170.3 24.0 200 761-967 465-735 (737)
164 TIGR01435 glu_cys_lig_rel glut 99.6 1.7E-13 3.7E-18 168.3 22.4 181 204-393 466-715 (737)
165 PLN02941 inositol-tetrakisphos 99.6 5.2E-13 1.1E-17 150.5 24.2 230 667-947 39-306 (328)
166 PRK05246 glutathione synthetas 99.5 6.8E-13 1.5E-17 152.2 25.1 278 113-414 19-310 (316)
167 TIGR02068 cya_phycin_syn cyano 99.5 4.3E-13 9.4E-18 172.1 22.9 202 203-413 203-470 (864)
168 TIGR01380 glut_syn glutathione 99.5 7.7E-13 1.7E-17 151.1 21.7 269 664-968 18-308 (312)
169 TIGR02068 cya_phycin_syn cyano 99.5 8.2E-13 1.8E-17 169.6 21.4 202 761-969 203-471 (864)
170 PRK05246 glutathione synthetas 99.5 2.9E-12 6.3E-17 147.0 23.4 269 664-970 19-311 (316)
171 TIGR02291 rimK_rel_E_lig alpha 99.4 6.5E-12 1.4E-16 140.6 20.9 205 760-970 26-294 (317)
172 COG1759 5-formaminoimidazole-4 99.4 1.4E-11 3E-16 132.0 22.2 269 93-395 19-320 (361)
173 COG1759 5-formaminoimidazole-4 99.4 1.9E-11 4.2E-16 130.8 21.1 271 643-950 18-320 (361)
174 PF00289 CPSase_L_chain: Carba 99.4 3.2E-13 6.9E-18 128.2 5.7 100 643-766 2-110 (110)
175 TIGR02291 rimK_rel_E_lig alpha 99.4 2.9E-11 6.3E-16 135.4 20.9 200 202-411 26-290 (317)
176 PF00289 CPSase_L_chain: Carba 99.3 2.9E-12 6.3E-17 121.7 5.8 102 91-208 1-110 (110)
177 PF14398 ATPgrasp_YheCD: YheC/ 99.0 1E-08 2.3E-13 113.9 20.1 186 750-948 6-236 (262)
178 TIGR01016 sucCoAbeta succinyl- 99.0 8.4E-09 1.8E-13 121.8 18.8 178 771-948 4-221 (386)
179 TIGR01016 sucCoAbeta succinyl- 99.0 8.1E-09 1.8E-13 122.0 15.8 105 213-317 4-124 (386)
180 PF14397 ATPgrasp_ST: Sugar-tr 98.9 5.9E-08 1.3E-12 109.1 20.6 198 761-962 16-274 (285)
181 PF14397 ATPgrasp_ST: Sugar-tr 98.9 6.8E-08 1.5E-12 108.6 20.9 198 203-407 16-274 (285)
182 PF14398 ATPgrasp_YheCD: YheC/ 98.9 6.5E-08 1.4E-12 107.6 20.4 187 194-394 5-237 (262)
183 PRK00696 sucC succinyl-CoA syn 98.9 5.7E-08 1.2E-12 114.9 19.5 103 771-873 4-123 (388)
184 PRK00696 sucC succinyl-CoA syn 98.9 5E-08 1.1E-12 115.3 18.6 103 213-316 4-122 (388)
185 COG0045 SucC Succinyl-CoA synt 98.5 2E-06 4.3E-11 96.5 17.1 105 214-318 5-122 (387)
186 PF08442 ATP-grasp_2: ATP-gras 98.5 9E-07 2E-11 93.7 13.7 101 215-315 5-120 (202)
187 COG0045 SucC Succinyl-CoA synt 98.5 2.4E-06 5.2E-11 95.8 16.7 101 773-873 6-120 (387)
188 PF08442 ATP-grasp_2: ATP-gras 98.5 1.2E-06 2.6E-11 92.7 13.1 98 773-870 5-118 (202)
189 PF05770 Ins134_P3_kin: Inosit 98.5 1.4E-06 3E-11 97.4 13.6 177 756-947 79-291 (307)
190 PF13549 ATP-grasp_5: ATP-gras 98.5 2.9E-07 6.4E-12 98.9 7.4 106 771-876 11-131 (222)
191 PRK14046 malate--CoA ligase su 98.4 4.9E-06 1.1E-10 97.8 17.3 103 214-317 5-123 (392)
192 PRK14046 malate--CoA ligase su 98.4 6E-06 1.3E-10 97.0 17.4 104 772-875 5-125 (392)
193 PF05770 Ins134_P3_kin: Inosit 98.4 2E-06 4.3E-11 96.2 12.2 182 197-393 78-294 (307)
194 PF02844 GARS_N: Phosphoribosy 98.3 1.7E-06 3.6E-11 79.9 7.6 97 93-210 1-99 (100)
195 cd01421 IMPCH Inosine monophos 98.3 3.9E-06 8.5E-11 86.0 10.0 112 1043-1156 2-156 (187)
196 PLN00124 succinyl-CoA ligase [ 98.3 2.5E-05 5.4E-10 91.8 18.0 95 772-867 32-151 (422)
197 PLN00124 succinyl-CoA ligase [ 98.2 2.8E-05 6.2E-10 91.4 16.5 104 213-318 31-161 (422)
198 PF02955 GSH-S_ATP: Prokaryoti 98.2 1.1E-05 2.4E-10 83.1 11.5 142 786-945 12-162 (173)
199 PF13549 ATP-grasp_5: ATP-gras 98.2 2.4E-05 5.2E-10 84.3 13.8 106 213-319 11-130 (222)
200 PLN02235 ATP citrate (pro-S)-l 98.2 6.4E-05 1.4E-09 87.1 17.7 102 215-317 9-132 (423)
201 PLN02235 ATP citrate (pro-S)-l 98.1 5.4E-05 1.2E-09 87.7 16.5 101 773-873 9-131 (423)
202 PF02955 GSH-S_ATP: Prokaryoti 98.1 4.3E-05 9.3E-10 78.8 13.4 138 228-388 12-160 (173)
203 PF02844 GARS_N: Phosphoribosy 97.9 1.1E-05 2.3E-10 74.6 3.5 96 645-768 2-99 (100)
204 PF02750 Synapsin_C: Synapsin, 97.7 0.0018 4E-08 66.3 16.4 167 204-387 2-175 (203)
205 PRK00881 purH bifunctional pho 97.6 0.00019 4E-09 84.8 9.9 113 1042-1156 5-161 (513)
206 PF01820 Dala_Dala_lig_N: D-al 97.6 5.3E-06 1.1E-10 80.4 -3.2 102 93-203 1-117 (117)
207 PF14305 ATPgrasp_TupA: TupA-l 97.6 0.0021 4.6E-08 70.5 16.6 175 764-948 13-221 (239)
208 PF14305 ATPgrasp_TupA: TupA-l 97.5 0.0019 4.1E-08 70.9 15.3 173 207-393 14-221 (239)
209 PLN02891 IMP cyclohydrolase 97.3 0.00079 1.7E-08 79.1 9.5 117 1038-1156 17-179 (547)
210 PF02785 Biotin_carb_C: Biotin 97.3 0.00041 8.8E-09 65.6 5.6 86 424-517 3-95 (107)
211 PF02750 Synapsin_C: Synapsin, 97.2 0.0098 2.1E-07 61.1 15.3 167 762-943 2-176 (203)
212 TIGR00355 purH phosphoribosyla 97.2 0.00039 8.5E-09 81.7 5.4 112 1043-1156 2-156 (511)
213 TIGR00160 MGSA methylglyoxal s 97.2 0.0022 4.8E-08 62.6 9.4 106 1050-1155 11-122 (143)
214 COG1803 MgsA Methylglyoxal syn 97.0 0.0071 1.5E-07 57.0 10.7 110 1045-1156 9-125 (142)
215 smart00878 Biotin_carb_C Bioti 97.0 0.0019 4.1E-08 61.2 6.6 85 425-517 4-95 (107)
216 PF03133 TTL: Tubulin-tyrosine 96.9 0.0012 2.7E-08 75.2 5.8 52 808-864 67-123 (292)
217 PF06849 DUF1246: Protein of u 96.7 0.0044 9.6E-08 58.8 7.1 111 664-789 7-122 (124)
218 PF03133 TTL: Tubulin-tyrosine 96.7 0.011 2.3E-07 67.5 12.0 42 251-297 67-108 (292)
219 PF06849 DUF1246: Protein of u 96.4 0.0072 1.6E-07 57.4 6.5 112 113-232 7-123 (124)
220 PF14403 CP_ATPgrasp_2: Circul 96.4 0.04 8.6E-07 65.1 13.6 174 92-298 185-385 (445)
221 PF06973 DUF1297: Domain of un 96.1 0.082 1.8E-06 53.9 12.5 104 288-395 21-147 (188)
222 COG0041 PurE Phosphoribosylcar 96.1 0.011 2.4E-07 58.0 6.0 68 1012-1081 4-72 (162)
223 TIGR00715 precor6x_red precorr 96.1 0.097 2.1E-06 58.0 14.4 122 93-246 1-124 (256)
224 PRK08057 cobalt-precorrin-6x r 95.9 0.13 2.9E-06 56.6 14.2 94 92-201 2-96 (248)
225 PF06973 DUF1297: Domain of un 95.7 0.072 1.6E-06 54.3 10.0 100 845-949 21-146 (188)
226 KOG3895 Synaptic vesicle prote 95.7 0.035 7.5E-07 61.2 8.2 204 163-387 151-364 (488)
227 KOG3895 Synaptic vesicle prote 95.4 0.065 1.4E-06 59.2 8.8 175 750-943 183-365 (488)
228 PF14403 CP_ATPgrasp_2: Circul 95.0 0.24 5.1E-06 58.8 12.8 169 668-866 204-395 (445)
229 COG0569 TrkA K+ transport syst 95.0 0.072 1.6E-06 58.1 8.0 111 93-225 1-113 (225)
230 COG1064 AdhP Zn-dependent alco 94.8 0.11 2.4E-06 59.3 9.1 173 629-840 153-326 (339)
231 COG2099 CobK Precorrin-6x redu 94.5 0.64 1.4E-05 50.4 13.5 122 93-248 3-128 (257)
232 PF14243 DUF4343: Domain of un 94.4 0.68 1.5E-05 45.8 12.5 116 250-391 2-117 (130)
233 PF14243 DUF4343: Domain of un 94.3 0.6 1.3E-05 46.1 11.8 113 807-944 2-115 (130)
234 PF02571 CbiJ: Precorrin-6x re 94.1 0.64 1.4E-05 51.4 12.9 94 93-201 1-97 (249)
235 PF11379 DUF3182: Protein of u 94.0 0.59 1.3E-05 52.4 12.2 171 777-949 105-299 (355)
236 KOG1057 Arp2/3 complex-interac 93.6 0.42 9E-06 58.3 10.8 198 168-388 91-321 (1018)
237 PF11379 DUF3182: Protein of u 93.6 1.3 2.9E-05 49.7 14.0 163 228-394 114-299 (355)
238 PRK03562 glutathione-regulated 93.6 0.061 1.3E-06 67.7 4.3 115 643-787 400-515 (621)
239 PRK03659 glutathione-regulated 93.5 0.088 1.9E-06 66.1 5.6 114 643-786 400-514 (601)
240 KOG2799 Succinyl-CoA synthetas 93.4 0.16 3.4E-06 56.8 6.5 97 214-310 27-145 (434)
241 PF02254 TrkA_N: TrkA-N domain 93.3 0.071 1.5E-06 51.4 3.4 83 646-739 1-84 (116)
242 COG1064 AdhP Zn-dependent alco 93.2 0.21 4.6E-06 57.0 7.4 80 91-185 166-246 (339)
243 COG0138 PurH AICAR transformyl 93.2 0.061 1.3E-06 62.6 3.1 111 1044-1156 5-159 (515)
244 COG1087 GalE UDP-glucose 4-epi 92.9 0.33 7.1E-06 53.8 7.9 71 93-173 1-73 (329)
245 PRK10669 putative cation:proto 92.6 0.24 5.2E-06 61.9 7.5 84 643-737 417-501 (558)
246 COG0569 TrkA K+ transport syst 92.4 0.26 5.6E-06 53.8 6.4 110 644-783 1-113 (225)
247 PLN00016 RNA-binding protein; 91.7 1.1 2.3E-05 53.2 11.2 76 91-176 51-139 (378)
248 PF13478 XdhC_C: XdhC Rossmann 91.7 0.39 8.4E-06 47.9 6.2 76 646-738 1-76 (136)
249 TIGR00715 precor6x_red precorr 91.5 0.79 1.7E-05 50.9 9.1 70 645-725 2-72 (256)
250 PRK04148 hypothetical protein; 91.1 0.3 6.4E-06 48.2 4.7 77 643-731 17-115 (134)
251 PRK04148 hypothetical protein; 91.1 0.43 9.4E-06 47.1 5.8 77 92-180 17-115 (134)
252 PF13380 CoA_binding_2: CoA bi 90.9 0.81 1.8E-05 44.3 7.5 100 93-206 1-111 (116)
253 COG1748 LYS9 Saccharopine dehy 90.8 0.72 1.6E-05 53.9 8.2 116 92-230 1-121 (389)
254 COG1748 LYS9 Saccharopine dehy 90.7 0.25 5.5E-06 57.6 4.4 114 643-786 1-119 (389)
255 TIGR02964 xanthine_xdhC xanthi 90.2 1.6 3.4E-05 48.3 9.8 34 93-137 101-134 (246)
256 PRK03659 glutathione-regulated 90.1 0.28 6.1E-06 61.6 4.4 115 92-228 400-514 (601)
257 KOG2799 Succinyl-CoA synthetas 89.9 0.93 2E-05 50.9 7.6 96 772-867 27-145 (434)
258 PRK05849 hypothetical protein; 89.3 16 0.00035 47.0 18.9 172 769-943 8-214 (783)
259 PRK10669 putative cation:proto 89.2 1 2.2E-05 56.3 8.5 75 92-177 417-491 (558)
260 PF13380 CoA_binding_2: CoA bi 89.1 2 4.4E-05 41.6 8.6 99 644-763 1-110 (116)
261 PLN02657 3,8-divinyl protochlo 88.7 3.6 7.7E-05 49.0 12.2 76 91-176 59-145 (390)
262 KOG2156 Tubulin-tyrosine ligas 88.3 2.3 5.1E-05 50.0 9.6 59 229-297 284-343 (662)
263 PLN02572 UDP-sulfoquinovose sy 88.2 2.7 5.8E-05 50.9 10.8 74 90-173 45-142 (442)
264 PLN03209 translocon at the inn 88.1 5.6 0.00012 49.0 13.3 75 91-177 79-169 (576)
265 KOG2835 Phosphoribosylamidoimi 87.6 0.38 8.2E-06 54.7 2.8 121 847-974 3-123 (373)
266 KOG1057 Arp2/3 complex-interac 87.4 0.14 3E-06 62.2 -0.8 177 757-943 116-321 (1018)
267 CHL00194 ycf39 Ycf39; Provisio 87.3 8.4 0.00018 44.3 13.9 72 93-176 1-73 (317)
268 PRK03562 glutathione-regulated 87.3 0.64 1.4E-05 58.7 5.0 116 92-229 400-515 (621)
269 COG2344 AT-rich DNA-binding pr 87.2 1 2.2E-05 46.4 5.2 130 582-739 33-167 (211)
270 PRK05472 redox-sensing transcr 86.8 4.1 8.8E-05 44.1 10.2 140 574-739 22-167 (213)
271 KOG1447 GTP-specific succinyl- 86.6 5.2 0.00011 43.1 10.2 103 773-875 25-152 (412)
272 KOG2156 Tubulin-tyrosine ligas 86.5 2.4 5.3E-05 49.9 8.4 56 789-854 287-343 (662)
273 PF04321 RmlD_sub_bind: RmlD s 84.5 1.5 3.2E-05 49.8 5.7 60 93-176 1-60 (286)
274 PF02254 TrkA_N: TrkA-N domain 84.5 1.3 2.8E-05 42.6 4.4 71 95-177 1-72 (116)
275 TIGR02964 xanthine_xdhC xanthi 84.3 4.3 9.3E-05 44.9 9.0 37 642-689 99-135 (246)
276 COG2910 Putative NADH-flavin r 84.2 4.4 9.6E-05 41.9 8.1 73 93-178 1-73 (211)
277 COG2099 CobK Precorrin-6x redu 84.0 6.2 0.00014 43.0 9.6 70 643-723 2-71 (257)
278 COG1087 GalE UDP-glucose 4-epi 83.7 2.7 5.9E-05 46.8 6.9 71 644-724 1-73 (329)
279 PRK05849 hypothetical protein; 83.6 58 0.0013 42.1 19.6 176 211-389 8-215 (783)
280 PLN02695 GDP-D-mannose-3',5'-e 83.3 4 8.7E-05 48.2 8.9 73 91-175 20-93 (370)
281 KOG2555 AICAR transformylase/I 82.6 0.94 2E-05 51.5 2.9 48 1044-1093 7-54 (588)
282 PLN02819 lysine-ketoglutarate 82.6 5.2 0.00011 52.8 10.0 116 91-229 568-700 (1042)
283 PRK08057 cobalt-precorrin-6x r 82.5 9.3 0.0002 42.3 10.6 68 643-723 2-70 (248)
284 PF00070 Pyr_redox: Pyridine n 82.5 2.6 5.5E-05 37.6 5.2 59 94-172 1-59 (80)
285 PRK10537 voltage-gated potassi 82.4 3.3 7.2E-05 49.0 7.5 111 643-785 240-351 (393)
286 PF13478 XdhC_C: XdhC Rossmann 82.4 3.5 7.5E-05 41.1 6.6 69 95-180 1-69 (136)
287 TIGR01162 purE phosphoribosyla 82.2 2.8 6E-05 42.4 5.7 66 1014-1081 2-68 (156)
288 PLN02819 lysine-ketoglutarate 81.8 3.9 8.4E-05 54.0 8.4 165 640-834 566-762 (1042)
289 PRK09620 hypothetical protein; 81.6 6 0.00013 43.3 8.6 76 92-173 3-93 (229)
290 PRK12828 short chain dehydroge 81.5 5.8 0.00013 43.0 8.8 76 91-176 6-91 (239)
291 PF00899 ThiF: ThiF family; I 81.2 9.1 0.0002 37.9 9.2 70 643-726 2-77 (135)
292 PF00070 Pyr_redox: Pyridine n 81.1 2.4 5.1E-05 37.8 4.5 34 645-689 1-34 (80)
293 PRK12475 thiamine/molybdopteri 81.0 11 0.00025 43.7 11.2 115 91-230 23-146 (338)
294 CHL00194 ycf39 Ycf39; Provisio 80.8 7.3 0.00016 44.8 9.6 69 645-725 2-71 (317)
295 cd01483 E1_enzyme_family Super 80.6 7.6 0.00016 38.9 8.5 65 645-723 1-71 (143)
296 PRK08220 2,3-dihydroxybenzoate 80.3 8.9 0.00019 42.1 9.8 74 91-176 7-85 (252)
297 cd01483 E1_enzyme_family Super 80.2 7.4 0.00016 39.0 8.3 112 94-229 1-118 (143)
298 PLN00016 RNA-binding protein; 80.2 5.7 0.00012 47.0 8.7 89 641-739 50-153 (378)
299 PRK06523 short chain dehydroge 79.9 9.8 0.00021 42.1 10.0 74 91-176 8-86 (260)
300 PF13460 NAD_binding_10: NADH( 79.6 2.9 6.3E-05 43.6 5.3 69 95-176 1-69 (183)
301 TIGR02356 adenyl_thiF thiazole 79.5 9 0.0002 41.0 9.1 117 91-231 20-142 (202)
302 PF04321 RmlD_sub_bind: RmlD s 79.4 1.7 3.6E-05 49.4 3.6 134 645-819 2-154 (286)
303 TIGR02622 CDP_4_6_dhtase CDP-g 79.3 6.3 0.00014 46.0 8.6 75 92-176 4-84 (349)
304 TIGR02356 adenyl_thiF thiazole 79.3 8.2 0.00018 41.3 8.7 36 640-686 18-54 (202)
305 COG1091 RfbD dTDP-4-dehydrorha 79.3 4.6 9.9E-05 45.2 6.8 57 94-175 2-58 (281)
306 PRK09987 dTDP-4-dehydrorhamnos 79.0 5 0.00011 45.8 7.5 62 93-175 1-62 (299)
307 KOG1203 Predicted dehydrogenas 79.0 7.5 0.00016 45.8 8.7 36 91-136 78-113 (411)
308 PRK12446 undecaprenyldiphospho 79.0 8.6 0.00019 45.1 9.5 98 92-202 1-119 (352)
309 PRK12475 thiamine/molybdopteri 78.7 9.3 0.0002 44.4 9.5 36 641-687 22-58 (338)
310 PF02571 CbiJ: Precorrin-6x re 78.5 9.5 0.00021 42.2 9.0 68 644-723 1-71 (249)
311 COG0771 MurD UDP-N-acetylmuram 78.2 4.9 0.00011 48.1 7.1 36 92-138 7-42 (448)
312 PF00899 ThiF: ThiF family; I 78.2 16 0.00035 36.1 9.9 33 93-136 3-36 (135)
313 PLN02653 GDP-mannose 4,6-dehyd 78.2 11 0.00024 43.7 10.2 75 91-175 5-91 (340)
314 cd01075 NAD_bind_Leu_Phe_Val_D 77.8 14 0.00029 39.6 9.8 116 91-235 27-142 (200)
315 COG0702 Predicted nucleoside-d 77.8 30 0.00066 38.3 13.3 151 93-257 1-168 (275)
316 PRK07856 short chain dehydroge 77.7 10 0.00023 41.7 9.4 75 91-176 5-84 (252)
317 PF05368 NmrA: NmrA-like famil 77.3 6.9 0.00015 42.7 7.6 120 95-228 1-137 (233)
318 KOG1447 GTP-specific succinyl- 76.8 25 0.00054 38.1 11.0 95 215-310 25-142 (412)
319 PRK07231 fabG 3-ketoacyl-(acyl 76.6 4.3 9.3E-05 44.6 5.8 75 92-176 5-90 (251)
320 TIGR01470 cysG_Nterm siroheme 76.4 5.1 0.00011 43.0 6.0 37 641-688 7-43 (205)
321 PRK06171 sorbitol-6-phosphate 76.4 15 0.00033 40.7 10.3 73 92-176 9-86 (266)
322 PRK05865 hypothetical protein; 76.0 28 0.0006 45.5 13.4 69 93-175 1-69 (854)
323 COG2081 Predicted flavoprotein 75.6 9.1 0.0002 44.6 8.0 34 93-137 4-37 (408)
324 PRK11199 tyrA bifunctional cho 75.6 9.7 0.00021 45.0 8.7 35 642-687 97-132 (374)
325 PLN00093 geranylgeranyl diphos 75.3 5.2 0.00011 48.5 6.5 33 93-136 40-72 (450)
326 cd01080 NAD_bind_m-THF_DH_Cycl 75.3 8.8 0.00019 39.8 7.2 55 91-177 43-97 (168)
327 TIGR01472 gmd GDP-mannose 4,6- 75.0 10 0.00022 44.1 8.7 73 93-175 1-86 (343)
328 PRK07688 thiamine/molybdopteri 75.0 12 0.00025 43.7 8.9 114 91-229 23-145 (339)
329 cd00757 ThiF_MoeB_HesA_family 75.0 15 0.00033 40.1 9.5 70 640-723 18-93 (228)
330 PRK10675 UDP-galactose-4-epime 74.9 9.3 0.0002 44.2 8.3 73 93-175 1-81 (338)
331 KOG2157 Predicted tubulin-tyro 74.8 16 0.00034 44.4 10.0 50 806-855 199-251 (497)
332 TIGR01214 rmlD dTDP-4-dehydror 74.8 7.7 0.00017 43.7 7.4 59 94-176 1-59 (287)
333 PRK07231 fabG 3-ketoacyl-(acyl 74.8 2.3 5E-05 46.8 3.0 38 642-689 4-41 (251)
334 PRK06079 enoyl-(acyl carrier p 74.4 7.3 0.00016 43.1 6.9 37 90-135 5-42 (252)
335 PRK06398 aldose dehydrogenase; 74.3 17 0.00037 40.3 9.9 71 92-176 6-81 (258)
336 PRK08264 short chain dehydroge 74.1 15 0.00032 40.0 9.2 75 92-176 6-82 (238)
337 PRK05562 precorrin-2 dehydroge 74.1 7.5 0.00016 42.1 6.5 36 641-687 23-58 (223)
338 TIGR02355 moeB molybdopterin s 73.9 19 0.00041 39.7 9.9 70 92-175 24-99 (240)
339 TIGR02355 moeB molybdopterin s 73.9 21 0.00045 39.4 10.1 70 641-724 22-97 (240)
340 TIGR02622 CDP_4_6_dhtase CDP-g 73.8 4.3 9.2E-05 47.4 5.1 72 643-724 4-81 (349)
341 PLN02740 Alcohol dehydrogenase 73.8 10 0.00023 44.8 8.5 177 641-848 197-379 (381)
342 PRK01368 murD UDP-N-acetylmura 73.8 20 0.00043 43.6 10.9 87 92-202 6-92 (454)
343 PRK12823 benD 1,6-dihydroxycyc 73.5 6.4 0.00014 43.6 6.3 41 86-136 2-42 (260)
344 PF03446 NAD_binding_2: NAD bi 73.4 9.3 0.0002 39.3 6.9 35 92-137 1-35 (163)
345 PRK05690 molybdopterin biosynt 73.3 14 0.00031 40.8 8.7 35 641-686 30-65 (245)
346 PRK05693 short chain dehydroge 73.3 6.8 0.00015 43.9 6.4 74 93-176 2-81 (274)
347 PRK06182 short chain dehydroge 73.1 7.7 0.00017 43.4 6.8 75 92-176 3-83 (273)
348 PRK08177 short chain dehydroge 73.0 10 0.00022 41.0 7.5 74 93-176 2-80 (225)
349 PRK08177 short chain dehydroge 72.9 3.6 7.8E-05 44.6 4.0 37 644-690 2-38 (225)
350 PRK06719 precorrin-2 dehydroge 72.7 5.1 0.00011 41.1 4.7 34 91-135 12-45 (157)
351 PRK13303 L-aspartate dehydroge 72.6 15 0.00033 41.1 8.9 111 93-227 2-115 (265)
352 TIGR03466 HpnA hopanoid-associ 72.4 14 0.0003 42.4 8.9 70 93-174 1-71 (328)
353 PF13460 NAD_binding_10: NADH( 72.3 4.1 9E-05 42.4 4.1 69 646-727 1-69 (183)
354 PF01488 Shikimate_DH: Shikima 72.2 5.1 0.00011 39.8 4.5 35 91-136 11-46 (135)
355 PRK05993 short chain dehydroge 72.1 7.8 0.00017 43.6 6.5 74 92-175 4-84 (277)
356 PRK07066 3-hydroxybutyryl-CoA 72.0 5.2 0.00011 46.0 5.1 37 90-137 5-41 (321)
357 PRK06179 short chain dehydroge 72.0 18 0.00039 40.3 9.5 73 92-176 4-82 (270)
358 PRK07856 short chain dehydroge 72.0 6.3 0.00014 43.5 5.7 37 642-688 5-41 (252)
359 PRK12826 3-ketoacyl-(acyl-carr 71.7 7.4 0.00016 42.6 6.2 76 91-176 5-92 (251)
360 PRK09496 trkA potassium transp 71.6 5.9 0.00013 48.1 5.8 76 642-729 230-308 (453)
361 PLN02778 3,5-epimerase/4-reduc 71.5 13 0.00028 42.4 8.3 57 92-175 9-65 (298)
362 cd01487 E1_ThiF_like E1_ThiF_l 71.3 23 0.0005 36.9 9.3 32 94-136 1-33 (174)
363 PRK09880 L-idonate 5-dehydroge 71.3 16 0.00034 42.6 9.1 141 642-805 169-330 (343)
364 PRK02261 methylaspartate mutas 71.0 1E+02 0.0022 30.8 13.3 60 93-176 4-63 (137)
365 PF11198 DUF2857: Protein of u 71.0 16 0.00034 38.4 7.9 86 508-609 30-115 (180)
366 PLN02695 GDP-D-mannose-3',5'-e 71.0 7.1 0.00015 46.1 6.1 38 640-687 18-55 (370)
367 PRK06463 fabG 3-ketoacyl-(acyl 70.9 11 0.00024 41.6 7.3 76 91-176 6-88 (255)
368 PRK07577 short chain dehydroge 70.8 24 0.00052 38.2 9.9 70 92-176 3-77 (234)
369 KOG0023 Alcohol dehydrogenase, 70.8 18 0.00039 40.8 8.5 35 642-687 181-215 (360)
370 PRK05866 short chain dehydroge 70.7 12 0.00025 42.6 7.6 75 92-176 40-126 (293)
371 PRK05600 thiamine biosynthesis 70.4 17 0.00037 42.8 9.0 36 640-686 38-74 (370)
372 TIGR01472 gmd GDP-mannose 4,6- 70.3 6.1 0.00013 46.0 5.3 70 644-723 1-83 (343)
373 PLN02927 antheraxanthin epoxid 70.3 9.8 0.00021 48.1 7.3 34 92-136 81-114 (668)
374 PRK12829 short chain dehydroge 70.2 7.8 0.00017 42.9 6.0 76 91-176 10-95 (264)
375 cd01485 E1-1_like Ubiquitin ac 70.1 34 0.00075 36.4 10.5 118 92-231 19-144 (198)
376 COG1148 HdrA Heterodisulfide r 69.7 4.7 0.0001 47.6 4.0 39 642-691 123-161 (622)
377 cd00757 ThiF_MoeB_HesA_family 69.7 26 0.00057 38.2 9.8 71 91-175 20-96 (228)
378 PLN03209 translocon at the inn 69.6 9.1 0.0002 47.3 6.6 38 642-689 79-116 (576)
379 PRK06179 short chain dehydroge 69.4 7.7 0.00017 43.2 5.7 39 642-690 3-41 (270)
380 COG1148 HdrA Heterodisulfide r 69.4 5.8 0.00013 46.9 4.6 36 91-137 123-158 (622)
381 PRK06718 precorrin-2 dehydroge 69.3 6.9 0.00015 41.9 5.0 34 91-135 9-42 (202)
382 PF02826 2-Hacid_dh_C: D-isome 69.2 7 0.00015 40.9 5.0 37 90-137 34-70 (178)
383 PRK08762 molybdopterin biosynt 69.1 23 0.0005 41.9 9.9 35 641-686 133-168 (376)
384 PF13241 NAD_binding_7: Putati 69.0 4.5 9.7E-05 38.2 3.1 35 91-136 6-40 (103)
385 COG0771 MurD UDP-N-acetylmuram 68.9 7 0.00015 46.8 5.3 91 642-760 6-98 (448)
386 PRK09496 trkA potassium transp 68.8 7.4 0.00016 47.2 5.8 73 93-177 1-75 (453)
387 PRK07688 thiamine/molybdopteri 68.7 16 0.00036 42.4 8.3 36 641-687 22-58 (339)
388 PF03435 Saccharop_dh: Sacchar 68.6 16 0.00034 43.4 8.4 113 95-230 1-120 (386)
389 COG2085 Predicted dinucleotide 68.4 11 0.00024 40.2 6.0 174 643-847 1-176 (211)
390 PLN02653 GDP-mannose 4,6-dehyd 68.3 9.7 0.00021 44.2 6.4 36 642-687 5-40 (340)
391 PRK13940 glutamyl-tRNA reducta 68.3 3.9 8.4E-05 48.8 3.1 93 572-687 122-215 (414)
392 PRK06171 sorbitol-6-phosphate 68.3 9.6 0.00021 42.4 6.2 38 642-689 8-45 (266)
393 PRK12367 short chain dehydroge 68.2 15 0.00033 40.5 7.7 75 90-176 12-88 (245)
394 TIGR01470 cysG_Nterm siroheme 68.0 7.6 0.00016 41.7 5.0 35 91-136 8-42 (205)
395 PRK06483 dihydromonapterin red 68.0 12 0.00026 40.8 6.7 75 92-176 2-83 (236)
396 PF01488 Shikimate_DH: Shikima 67.9 6.6 0.00014 39.1 4.2 37 641-688 10-47 (135)
397 PLN00141 Tic62-NAD(P)-related 67.9 7.5 0.00016 43.0 5.2 37 91-137 16-52 (251)
398 PRK08268 3-hydroxy-acyl-CoA de 67.8 8.6 0.00019 47.3 6.1 132 640-816 4-190 (507)
399 KOG0024 Sorbitol dehydrogenase 67.8 13 0.00029 42.0 6.8 84 91-185 169-260 (354)
400 TIGR03649 ergot_EASG ergot alk 67.6 16 0.00035 41.1 7.9 35 645-689 1-35 (285)
401 KOG2157 Predicted tubulin-tyro 67.5 30 0.00065 42.0 10.2 49 250-298 200-251 (497)
402 cd02033 BchX Chlorophyllide re 67.5 58 0.0013 37.7 12.3 44 642-691 30-73 (329)
403 PRK06057 short chain dehydroge 67.5 14 0.00029 40.9 7.2 75 92-176 7-88 (255)
404 COG3967 DltE Short-chain dehyd 67.4 8.3 0.00018 40.7 4.8 65 641-720 3-78 (245)
405 cd01492 Aos1_SUMO Ubiquitin ac 67.2 21 0.00046 38.0 8.2 112 92-228 21-138 (197)
406 PRK09135 pteridine reductase; 67.1 24 0.00052 38.4 9.0 75 92-176 6-94 (249)
407 PRK08017 oxidoreductase; Provi 67.1 14 0.00031 40.6 7.2 34 93-137 3-37 (256)
408 COG0707 MurG UDP-N-acetylgluco 66.7 29 0.00062 40.7 9.8 97 93-202 1-119 (357)
409 COG0373 HemA Glutamyl-tRNA red 66.6 4.2 9E-05 48.0 2.8 128 573-729 120-249 (414)
410 PRK05653 fabG 3-ketoacyl-(acyl 66.5 11 0.00025 40.9 6.3 75 92-176 5-91 (246)
411 PRK01438 murD UDP-N-acetylmura 66.5 13 0.00027 45.7 7.2 35 642-687 15-49 (480)
412 TIGR03451 mycoS_dep_FDH mycoth 66.5 13 0.00027 43.7 6.9 80 641-731 175-258 (358)
413 PRK01438 murD UDP-N-acetylmura 66.5 23 0.00049 43.4 9.5 34 92-136 16-49 (480)
414 PRK12939 short chain dehydroge 66.4 22 0.00047 38.9 8.5 75 92-176 7-93 (250)
415 PRK06567 putative bifunctional 66.4 6.8 0.00015 51.1 4.8 37 88-135 379-415 (1028)
416 PRK13869 plasmid-partitioning 66.3 19 0.00042 42.9 8.5 99 580-691 47-164 (405)
417 cd01492 Aos1_SUMO Ubiquitin ac 66.3 22 0.00047 38.0 8.0 69 641-723 19-93 (197)
418 PLN02172 flavin-containing mon 66.3 8.8 0.00019 46.7 5.7 35 92-137 10-44 (461)
419 PRK11908 NAD-dependent epimera 66.2 14 0.00031 42.9 7.4 70 93-174 2-75 (347)
420 PF01370 Epimerase: NAD depend 66.2 9.4 0.0002 41.3 5.5 72 95-176 1-74 (236)
421 cd08239 THR_DH_like L-threonin 66.2 12 0.00026 43.4 6.7 78 642-731 163-244 (339)
422 PRK08278 short chain dehydroge 66.1 34 0.00073 38.3 10.1 35 92-136 6-40 (273)
423 PRK02261 methylaspartate mutas 66.1 85 0.0019 31.3 11.7 48 662-727 16-63 (137)
424 PRK12384 sorbitol-6-phosphate 66.0 14 0.0003 40.9 6.9 35 92-136 2-36 (259)
425 PRK08306 dipicolinate synthase 66.0 6 0.00013 45.1 3.9 69 91-176 151-219 (296)
426 PLN02240 UDP-glucose 4-epimera 66.0 25 0.00053 40.9 9.3 74 92-175 5-89 (352)
427 PRK07023 short chain dehydroge 65.9 25 0.00053 38.4 8.8 35 93-137 2-36 (243)
428 PLN00141 Tic62-NAD(P)-related 65.9 4.9 0.00011 44.5 3.2 39 641-689 15-53 (251)
429 PRK12771 putative glutamate sy 65.9 11 0.00024 47.2 6.6 37 90-137 135-171 (564)
430 PRK07074 short chain dehydroge 65.8 13 0.00028 41.0 6.6 75 92-176 2-86 (257)
431 PRK07806 short chain dehydroge 65.8 25 0.00055 38.4 8.9 75 92-176 6-93 (248)
432 PLN02657 3,8-divinyl protochlo 65.7 9.8 0.00021 45.3 5.9 76 641-726 58-144 (390)
433 PRK08264 short chain dehydroge 65.7 8.8 0.00019 41.8 5.1 73 642-727 5-82 (238)
434 cd00755 YgdL_like Family of ac 65.7 16 0.00034 40.0 6.9 74 92-176 11-87 (231)
435 PRK12828 short chain dehydroge 65.6 8.8 0.00019 41.6 5.1 38 642-689 6-43 (239)
436 PRK05690 molybdopterin biosynt 65.6 31 0.00067 38.2 9.3 71 91-175 31-107 (245)
437 PRK08265 short chain dehydroge 65.6 15 0.00032 40.8 7.0 75 92-176 6-89 (261)
438 PRK04690 murD UDP-N-acetylmura 65.5 21 0.00045 43.6 8.8 89 91-202 7-98 (468)
439 PRK13302 putative L-aspartate 65.5 26 0.00056 39.4 8.8 107 93-227 7-118 (271)
440 PRK08267 short chain dehydroge 65.4 12 0.00027 41.3 6.3 74 93-176 2-86 (260)
441 PRK05878 pyruvate phosphate di 65.3 1.2E+02 0.0027 37.4 15.1 40 901-943 257-296 (530)
442 PF13477 Glyco_trans_4_2: Glyc 65.3 37 0.0008 33.3 9.1 74 94-176 1-83 (139)
443 PRK06953 short chain dehydroge 65.1 18 0.0004 38.9 7.4 74 93-176 2-79 (222)
444 PRK13303 L-aspartate dehydroge 65.1 8.3 0.00018 43.2 4.8 112 644-785 2-115 (265)
445 PLN02827 Alcohol dehydrogenase 65.1 26 0.00057 41.4 9.4 75 642-730 193-275 (378)
446 COG2102 Predicted ATPases of P 65.1 2.1E+02 0.0045 31.0 14.9 140 93-257 2-143 (223)
447 cd00755 YgdL_like Family of ac 65.0 17 0.00037 39.7 7.1 69 642-724 10-84 (231)
448 PF13241 NAD_binding_7: Putati 65.0 6 0.00013 37.3 3.1 36 641-687 5-40 (103)
449 PRK07060 short chain dehydroge 64.9 14 0.00031 40.3 6.6 76 91-176 8-86 (245)
450 PRK10217 dTDP-glucose 4,6-dehy 64.8 19 0.00042 41.9 8.1 74 93-176 2-83 (355)
451 TIGR02853 spore_dpaA dipicolin 64.8 6.7 0.00015 44.5 4.0 69 91-176 150-218 (287)
452 PRK07326 short chain dehydroge 64.7 16 0.00035 39.6 7.0 75 92-176 6-91 (237)
453 TIGR02354 thiF_fam2 thiamine b 64.7 60 0.0013 34.7 11.0 94 91-201 20-140 (200)
454 PRK06180 short chain dehydroge 64.6 14 0.00031 41.4 6.7 75 92-176 4-87 (277)
455 PF00743 FMO-like: Flavin-bind 64.6 8.2 0.00018 47.8 5.0 34 93-137 2-35 (531)
456 PRK07024 short chain dehydroge 64.5 12 0.00026 41.4 6.0 74 93-176 3-87 (257)
457 COG0240 GpsA Glycerol-3-phosph 64.5 16 0.00035 41.8 6.8 158 93-283 2-167 (329)
458 TIGR00518 alaDH alanine dehydr 64.5 11 0.00023 44.6 5.7 71 92-175 167-238 (370)
459 PRK03369 murD UDP-N-acetylmura 64.5 16 0.00034 45.0 7.4 35 91-136 11-45 (488)
460 PRK09186 flagellin modificatio 64.3 8.8 0.00019 42.3 4.8 38 642-689 3-40 (256)
461 cd08239 THR_DH_like L-threonin 64.1 12 0.00026 43.3 6.1 81 92-184 164-248 (339)
462 PRK09186 flagellin modificatio 64.1 22 0.00049 39.0 8.1 35 92-136 4-38 (256)
463 PRK09853 putative selenate red 63.9 12 0.00027 49.3 6.6 36 91-137 538-573 (1019)
464 PLN02778 3,5-epimerase/4-reduc 63.8 11 0.00023 43.1 5.5 56 641-723 7-62 (298)
465 PRK06398 aldose dehydrogenase; 63.8 12 0.00026 41.5 5.8 37 642-688 5-41 (258)
466 PLN02586 probable cinnamyl alc 63.8 43 0.00093 39.3 10.7 169 642-850 183-352 (360)
467 PRK09853 putative selenate red 63.8 11 0.00024 49.7 6.1 37 641-688 537-573 (1019)
468 PRK09424 pntA NAD(P) transhydr 63.7 12 0.00026 45.8 6.0 36 91-137 164-199 (509)
469 PRK06719 precorrin-2 dehydroge 63.7 9.4 0.0002 39.1 4.5 34 641-685 11-44 (157)
470 PF07992 Pyr_redox_2: Pyridine 63.7 11 0.00024 39.8 5.2 31 94-135 1-31 (201)
471 PRK07666 fabG 3-ketoacyl-(acyl 63.6 20 0.00043 39.0 7.5 75 92-176 7-93 (239)
472 PRK07236 hypothetical protein; 63.5 9.4 0.0002 45.3 5.2 33 93-136 7-39 (386)
473 COG0673 MviM Predicted dehydro 63.5 11 0.00023 43.8 5.6 143 643-813 3-153 (342)
474 PF02737 3HCDH_N: 3-hydroxyacy 63.5 3.2 6.9E-05 43.6 1.0 34 645-689 1-34 (180)
475 PRK12809 putative oxidoreducta 63.5 11 0.00024 47.9 6.1 36 91-137 309-344 (639)
476 PRK08277 D-mannonate oxidoredu 63.4 12 0.00027 41.9 5.9 35 92-136 10-44 (278)
477 PF02737 3HCDH_N: 3-hydroxyacy 63.4 7.5 0.00016 40.8 3.8 33 94-137 1-33 (180)
478 PRK01368 murD UDP-N-acetylmura 63.4 14 0.0003 45.0 6.6 36 641-688 4-39 (454)
479 PRK07062 short chain dehydroge 63.3 20 0.00044 39.7 7.6 37 91-137 7-43 (265)
480 PRK06182 short chain dehydroge 63.3 6.5 0.00014 44.0 3.6 36 643-688 3-38 (273)
481 PF07992 Pyr_redox_2: Pyridine 63.3 9.8 0.00021 40.1 4.8 32 645-687 1-32 (201)
482 PRK00726 murG undecaprenyldiph 63.1 37 0.00081 39.5 10.1 38 93-136 2-39 (357)
483 PLN02572 UDP-sulfoquinovose sy 63.0 13 0.00028 45.1 6.2 35 641-685 45-79 (442)
484 PHA02591 hypothetical protein; 62.9 12 0.00026 32.7 4.1 29 575-603 53-81 (83)
485 PRK05335 tRNA (uracil-5-)-meth 62.8 9.8 0.00021 45.3 4.9 35 92-137 2-36 (436)
486 PRK05565 fabG 3-ketoacyl-(acyl 62.8 14 0.00031 40.2 6.2 76 91-176 4-92 (247)
487 PRK07523 gluconate 5-dehydroge 62.8 13 0.00028 41.1 5.8 76 91-176 9-96 (255)
488 PRK06523 short chain dehydroge 62.7 14 0.0003 40.8 6.1 38 641-688 7-44 (260)
489 PRK03369 murD UDP-N-acetylmura 62.6 9.7 0.00021 46.8 5.1 36 642-688 11-46 (488)
490 PRK07814 short chain dehydroge 62.6 15 0.00032 40.8 6.3 76 91-176 9-96 (263)
491 PLN02871 UDP-sulfoquinovose:DA 62.6 79 0.0017 38.5 13.1 62 115-176 80-153 (465)
492 PRK06172 short chain dehydroge 62.5 16 0.00034 40.2 6.5 75 92-176 7-93 (253)
493 PRK05600 thiamine biosynthesis 62.5 30 0.00064 40.8 8.9 35 91-136 40-75 (370)
494 PRK06753 hypothetical protein; 62.4 8.2 0.00018 45.4 4.4 34 93-137 1-34 (373)
495 PRK08223 hypothetical protein; 62.4 53 0.0011 37.1 10.4 93 92-201 27-148 (287)
496 PRK06988 putative formyltransf 62.4 13 0.00029 42.6 5.9 36 93-139 3-38 (312)
497 PRK08220 2,3-dihydroxybenzoate 62.4 12 0.00026 41.0 5.5 36 642-687 7-42 (252)
498 PRK05868 hypothetical protein; 62.4 8.6 0.00019 45.4 4.5 35 92-137 1-35 (372)
499 PRK08309 short chain dehydroge 62.3 37 0.00081 35.5 8.7 33 93-136 1-33 (177)
500 cd01485 E1-1_like Ubiquitin ac 62.2 56 0.0012 34.8 10.3 69 641-723 17-93 (198)
No 1
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=2e-205 Score=1956.35 Aligned_cols=1086 Identities=88% Similarity=1.338 Sum_probs=1033.5
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK 165 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~ 165 (1190)
-|++.+++||||||+|+++|||++||||||.+++++|+++||+|+++|+||++++++..++|+.|+.|.+.+.+.+++++
T Consensus 17 ~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~ 96 (1102)
T PLN02735 17 AGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAK 96 (1102)
T ss_pred CCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIAN 245 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~ 245 (1190)
++||+|+|++||+++++++..|.++++|+.+|++++|++++++++++||..||++|+++|+|+|++..+++.+++.++++
T Consensus 97 e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~ 176 (1102)
T PLN02735 97 ERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAE 176 (1102)
T ss_pred hCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 246 EIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 246 ~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
++|.||+||||++++||.|+.+|+|.+||.+++..++..+..+++|||+||.||+|+++++++|.+|+++++|.++++++
T Consensus 177 ~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~~dp 256 (1102)
T PLN02735 177 DIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDP 256 (1102)
T ss_pred HhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEEEcC
Confidence 88559999999999999999999999999999998887777889999999999999999999998889999999999999
Q ss_pred CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCH
Q 001014 326 MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPI 405 (1190)
Q Consensus 326 ~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l 405 (1190)
.++|+|+++.++|++++++++++++++++.+++++||+++|++||||+++|++|++||||||||+++++.+++++||+|+
T Consensus 257 ~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~s~atG~~~ 336 (1102)
T PLN02735 257 MGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPI 336 (1102)
T ss_pred CccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCCcchhhhhhhCCCH
Confidence 99999999999999999999999999999999999999559999999999768899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHH
Q 001014 406 AKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALR 485 (1190)
Q Consensus 406 ~~~~~~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~ 485 (1190)
+++++++++|++|++++++++..++++|+|.+||+++|+|+|+|.+|++++..|+|+|||+|+||++|||++||++||+|
T Consensus 337 a~~~~klalG~~l~~~~~~~~~~~~a~~ep~~d~~~~k~p~~~f~~f~~~~~~l~~~mks~ge~m~~gr~~~ea~~ka~~ 416 (1102)
T PLN02735 337 AKMAAKLSVGYTLDQIPNDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTFQESFQKALR 416 (1102)
T ss_pred HHHHHHHHCCCChhhhccccccccchheeecCCcEEEEcccCCcccccCCCcccceeeeecceEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccCCCCCCCCCCCCCHHHHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhCC
Q 001014 486 SLECGFSGWGCSNVKELDWDWEQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQS 565 (1190)
Q Consensus 486 ~l~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~ 565 (1190)
+++.+..||.......+..++++|.+.|+||+++|+|+++||||||||+++||++|+||+|||+||++|+++|++|+++.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~id~~f~~~~~~~~~~~~~~~~~~ 496 (1102)
T PLN02735 417 SLETGFSGWGCAKVKELDWDWEQLKYKLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRS 496 (1102)
T ss_pred HhcCCCCCCCccccccccCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999888864422211123468999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCCCCCcE
Q 001014 566 VSNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAPTQKKK 645 (1190)
Q Consensus 566 ~~~~~~~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~k 645 (1190)
..+++.+.|++||++||||.|||++|++++++||++|++++|.|+||+||||||||++.||||||||+.++|+.++++||
T Consensus 497 ~~~~~~~~~~~~k~~g~~d~~ia~~~~~~~~~v~~~r~~~~~~~~~k~vd~~a~ef~~~t~y~y~ty~~~~~~~~~~~kk 576 (1102)
T PLN02735 497 LSELSKDDFYEVKRRGFSDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSSYDGECESAPTNKKK 576 (1102)
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCEeEEEeeCCCccccCCCCCcceeECCCCCCcccCCCce
Confidence 55578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQ 725 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~ 725 (1190)
|||||+|++||||++||||||+|++++|+++|++++++|+||++++++++++|++|++|+++|+++++|+++++|+|+++
T Consensus 577 vlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~ 656 (1102)
T PLN02735 577 VLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQ 656 (1102)
T ss_pred EEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh
Q 001014 726 FGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI 805 (1190)
Q Consensus 726 ~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i 805 (1190)
+|++++++++..+.++|++++.+.+.+...+.++||+++++++++||.+++++|+++|||+|++..+.+.+++.++++++
T Consensus 657 ~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~i 736 (1102)
T PLN02735 657 FGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRI 736 (1102)
T ss_pred CCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhc
Confidence 99999999999999888887766543211299999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecccc
Q 001014 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGV 885 (1190)
Q Consensus 806 gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~ 885 (1190)
||||||||++++||+||.+|+|.+||+++++.+...+++++++||+||++|+|++|++++|++|++++++++||+++.|+
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~~~~~gv 816 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQAGV 816 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEeeeccCc
Confidence 99999999999999999999999999999999887777789999999977999999999998899999999999999999
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHH
Q 001014 886 HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAA 965 (1190)
Q Consensus 886 ~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~ 965 (1190)
|+|++.+.+|++.++++..+++++++.+++++||++|++++||+++++|++||||+|||+++++|++++++|+|++++++
T Consensus 817 hsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~t~p~~~katGidl~~~~~ 896 (1102)
T PLN02735 817 HSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAIGHPLAKYAS 896 (1102)
T ss_pred cCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHH
Confidence 99999999999899999999999999999999999999999999977889999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCcee
Q 001014 966 LVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVF 1045 (1190)
Q Consensus 966 ~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~ 1045 (1190)
++++|++|.++++.+++.+++++||+|+|||++|+++|+.||++|||||||||+|+|+++|+.||+.+.++++|..|++|
T Consensus 897 ~~~~G~~l~~~~~~~~~~~~~~~vk~~vf~~~~~~~~d~~lg~emkStGe~~g~~~~~~~a~~ka~~~~~~~~p~~g~vl 976 (1102)
T PLN02735 897 LVMSGKSLKDLGFTEEVIPAHVSVKEAVLPFDKFQGCDVLLGPEMRSTGEVMGIDYEFSKAFAKAQIAAGQRLPLSGTVF 976 (1102)
T ss_pred HHHcCCChhhcCCCcccccCeEEEEeccCChhhCCCCCCCcceEEEeCCceeeecCCHHHHHHHHHhcCCCccCCCCeEE
Confidence 99999999998877677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHhHHHcCcEEEEEEcCCCCCCCCcc
Q 001014 1046 LSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVANGQIQMMVITSSGDSLDQID 1125 (1190)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~~i~~~~i~lvint~~~~~~~~~d 1125 (1190)
+++.+.+|+.+.+.++.|.++||+|+||.||+++|+++||+++.|.|+++++||++|+|++|+||+|||||+++....+|
T Consensus 977 iSv~d~~K~~~~~~a~~L~~lG~~i~aT~GTa~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~~~~~~~~~~d 1056 (1102)
T PLN02735 977 ISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALDQKD 1056 (1102)
T ss_pred EEEecCCchhHHHHHHHHHHCCCEEEEccHHHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEEEEECCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875433689
Q ss_pred cHHHHHHHHHCCCcEEccHHHHHHHHHHHHhccCCCcccccchhhh
Q 001014 1126 GLKLRRRGLAYKVPVITTVSGALANAEAIRSLKSNTVTMTALQDFF 1171 (1190)
Q Consensus 1126 ~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~~~~~~~~~~~l~~~~ 1171 (1190)
||+|||+|+++||||||++++|++++++|+....+.+++.+|||||
T Consensus 1057 ~~~iRr~a~~~~ip~~t~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (1102)
T PLN02735 1057 GRQLRRMALAYKVPIITTVAGALATAQAVKSLKECPIEMIALQDFF 1102 (1102)
T ss_pred cHHHHHHHHHcCCCEEecHHHHHHHHHHHHhhcCCCceEeEhHHhC
Confidence 9999999999999999999999999999976544557899999997
No 2
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.8e-193 Score=1856.60 Aligned_cols=1059 Identities=52% Similarity=0.847 Sum_probs=1011.2
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK 165 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~ 165 (1190)
||++.+.+||||||+|+++|||++||||||.+++++|+++|++|+++++||++.+++..++|..|++|++.+.+.+++++
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~ 80 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAR 80 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIAN 245 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~ 245 (1190)
+++|+|+|++||+++++++..++++++|+++|++++|++++++.+++||..+|++|+++|+|+|++..+++.+++.++++
T Consensus 81 e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~ 160 (1068)
T PRK12815 81 EKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAE 160 (1068)
T ss_pred hCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 246 EIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 246 ~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
++| ||+||||+++.||+|+.+|+|.+||.+++...+..++.++++||+||+||+|+++++++|.+|+++++|.++++++
T Consensus 161 ~ig-yPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~~~p 239 (1068)
T PRK12815 161 KIG-FPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDP 239 (1068)
T ss_pred HcC-CCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEeceeccc
Confidence 999 9999999999999999999999999999988887766679999999999999999999999999999999999999
Q ss_pred CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCH
Q 001014 326 MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPI 405 (1190)
Q Consensus 326 ~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l 405 (1190)
.|+++|+++.++|+++++++.++++++++.+++++||+ +|++||||++++++|++||+|||||+++++++++++||+|+
T Consensus 240 ~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~-~G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~pl 318 (1068)
T PRK12815 240 VGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGV-VGGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPI 318 (1068)
T ss_pred ccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCC-CCceEEEEEEECCCCcEEEEEEecCcccchhhhhHhhCCcH
Confidence 99999999999999889999999999999999999999 59999999999856889999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHH
Q 001014 406 AKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALR 485 (1190)
Q Consensus 406 ~~~~~~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~ 485 (1190)
++.++++++|++|+++++++++.++++|+|.++++++|+|+|+|++|++.+.+++++|||+||||++|+|++||++||.+
T Consensus 319 ~~~~~~~alG~~l~ei~~~i~g~~~a~~ep~~d~~~~k~p~~~f~~y~~~~~~~g~kmks~G~v~~ig~~~eea~~ka~~ 398 (1068)
T PRK12815 319 AKIAAKLAVGYTLNELKNPVTGLTYASFEPALDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKALR 398 (1068)
T ss_pred HHHHHHHHcCCChHHhcCCccCCcccccCCccceEEEEeccCccccccCccccccceecccceEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccCCCCC-CCCCCCCCHHHHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhC
Q 001014 486 SLECGFSGWGCS-NVKELDWDWEQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQ 564 (1190)
Q Consensus 486 ~l~~~~~g~~~~-~~~~~~~~~~~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~ 564 (1190)
+++.+..||... ... ..++++|++.|+||+++|||++++|||||+|+++|+++|+||+|||+||++|+++|++|+..
T Consensus 399 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~ 476 (1068)
T PRK12815 399 SLEIKRNGLSLPIELS--GKSDEELLQDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAED 476 (1068)
T ss_pred hhcCCCCCCCCccccc--cCCHHHHHHHhccCCCChHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999988888643 222 56889999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCCC-CC
Q 001014 565 SVSNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAPT-QK 643 (1190)
Q Consensus 565 ~~~~~~~~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~~-~~ 643 (1190)
.. +++.+.|++||++||||+|||++|++++++||++|++++|.|+||+||||||||++.||||||||+.+||+.++ ++
T Consensus 477 ~~-~~~~~~~~~~k~~gfsd~~ia~~~~~~~~~v~~~r~~~~~~p~~k~vd~~a~ef~~~t~~~y~ty~~~~~~~~~~~~ 555 (1068)
T PRK12815 477 GL-DLSADLLRKVKEKGFSDALLAELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEK 555 (1068)
T ss_pred Cc-cCCHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEEecCCcCcccCCCCceeeeCCCCCcCccCCCC
Confidence 21 36889999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
+||||||+|++||||++||||||++++++|+++||+++++|+||++++++++.+|++|++|.+.|++++++++++||+|+
T Consensus 556 kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI 635 (1068)
T PRK12815 556 KKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVI 635 (1068)
T ss_pred ceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHH
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAK 803 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~ 803 (1190)
+++++++..+++..++ +.| ++++|+++++++.++||..|+++|+++|||+|++..+.+.+++.++++
T Consensus 636 ~~~g~~~~~~la~~le----------~~G---i~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~ 702 (1068)
T PRK12815 636 VQFGGQTAINLAKGLE----------EAG---LTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAK 702 (1068)
T ss_pred EecCcHHHHHHHHHHH----------HCC---CeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHH
Confidence 9999999889999999 899 999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecc
Q 001014 804 EIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQA 883 (1190)
Q Consensus 804 ~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~ 883 (1190)
++|||+||||+++.||+||.+|+|.+||+.+++++ .+..++++||+|| .|.|++|++++|++ .+++.++++|+++.
T Consensus 703 ~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~--~s~~~~vlIeefI-~G~E~~Vd~i~dg~-~v~i~~i~e~~e~~ 778 (1068)
T PRK12815 703 RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN--ASQLYPILIDQFI-DGKEYEVDAISDGE-DVTIPGIIEHIEQA 778 (1068)
T ss_pred hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh--hcCCCCEEEEEee-cCceEEEEEEEcCC-ceEEeeEEEEeecc
Confidence 99999999999999999999999999999999986 4556899999999 88999999999964 67788899999999
Q ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHH
Q 001014 884 GVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKY 963 (1190)
Q Consensus 884 g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~ 963 (1190)
|+|+|++.+.+||..++++..+++++++.+++++||++|++|+||++ ++|++|+||||||++++.+++++++|+|++++
T Consensus 779 gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v-~~~~~yviEiNpR~s~t~~~~skatGv~l~~~ 857 (1068)
T PRK12815 779 GVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVL-ANDEIYVLEVNPRASRTVPFVSKATGVPLAKL 857 (1068)
T ss_pred CCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEE-ECCcEEEEEEeCCCCccHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999 67899999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCc--cccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCCC
Q 001014 964 AALVMSGKSLNDLGFTK--EVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLS 1041 (1190)
Q Consensus 964 ~~~~~lG~~l~~~~~~~--~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~ 1041 (1190)
++++++|+++.++++.. .+..++++||.|+|||.+|+++|+.||++|||||||||+|++++||+.||+.++++.+|..
T Consensus 858 ~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~f~f~~~~~~~~~lg~~m~stGe~~~~~~~~~~a~~k~~~~~~~~~p~~ 937 (1068)
T PRK12815 858 ATKVLLGKSLAELGYPNGLWPGSPFIHVKMPVFSYLKYPGVDNTLGPEMKSTGEVMGIDKDLEEALYKGYEASDLHIPSY 937 (1068)
T ss_pred HHHHHcCCChhhcccccccCCCCCeEEEEeccCChhHcccCCCccCCcceEcceeEeccCCHHHHHHHHHHhcCCCCCCC
Confidence 99999999999876543 3556899999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHhHHHcCcEEEEEEcCCCCCC
Q 001014 1042 GTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVANGQIQMMVITSSGDSL 1121 (1190)
Q Consensus 1042 g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~~i~~~~i~lvint~~~~~~ 1121 (1190)
|++|+++++.+|+.+.+++++|.++||+|+||.||+++|+++||+++.|.|++|++||++|+|++|+||+|||||.++..
T Consensus 938 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~at~gt~~~l~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~~~~~~ 1017 (1068)
T PRK12815 938 GTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSA 1017 (1068)
T ss_pred CeEEEEecccchHHHHHHHHHHHHCCCEEEEccHHHHHHHhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHHhccCCCcccccchhhh
Q 001014 1122 DQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRSLKSNTVTMTALQDFF 1171 (1190)
Q Consensus 1122 ~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~~~~~~~~~~~l~~~~ 1171 (1190)
.+|||+|||+|++++|||||++++|++++++|+..+ +++.++|+|+
T Consensus 1018 -~~~~~~irr~a~~~~ip~~t~~~~a~~~~~~~~~~~---~~~~~~~~~~ 1063 (1068)
T PRK12815 1018 -SEDAIKIRDEALSTHIPVFTELETAQAFLQVLESLA---LTTQPIQELQ 1063 (1068)
T ss_pred -ccccHHHHHHHHHcCCCEEecHHHHHHHHHHHHhcC---CCeeeHHHHH
Confidence 789999999999999999999999999999997543 4455555544
No 3
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=8.5e-192 Score=1843.31 Aligned_cols=1048 Identities=61% Similarity=0.972 Sum_probs=1004.8
Q ss_pred CCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc
Q 001014 87 GKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE 166 (1190)
Q Consensus 87 ~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~ 166 (1190)
|++.+.+||||||+|++.|||++||||||.+++++|+++|++|+++++||++++++..++|+.|+.|.+.+.+.++++++
T Consensus 1 ~~~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e 80 (1050)
T TIGR01369 1 PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE 80 (1050)
T ss_pred CCCCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 001014 167 RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE 246 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ 246 (1190)
++|+|+|++||+++++++..+.++++++++|++++|++++++++++||..+|++|+++|+|+|++..+++.+++.+++++
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ 160 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKE 160 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHH
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCC
Q 001014 247 IGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPM 326 (1190)
Q Consensus 247 ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~ 326 (1190)
+| ||+||||++++||+|+.+++|++||.+++..++..++.++++||+||+||+|+++++++|.+|+++.+|.+++++|.
T Consensus 161 ig-yPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~~~p~ 239 (1050)
T TIGR01369 161 IG-YPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPM 239 (1050)
T ss_pred hC-CCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEEEeCCCCEEEEeeceeccCc
Confidence 99 99999999999999999999999999999988877766799999999999999999999999999999999999999
Q ss_pred CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHH
Q 001014 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIA 406 (1190)
Q Consensus 327 g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~ 406 (1190)
++|+|+++..+|+++++++.++++++++.+++++||+. |.+||||++++++|++||+|||||+++++++++++||+|++
T Consensus 240 gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~-G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~atG~pl~ 318 (1050)
T TIGR01369 240 GVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIA 318 (1050)
T ss_pred ceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEECCCCcEEEEEeecCcCcchhhhhHHhCCCHH
Confidence 99999999999999999999999999999999999996 99999999998668999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHh
Q 001014 407 KMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRS 486 (1190)
Q Consensus 407 ~~~~~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~ 486 (1190)
+.++++++|++|.++.|++++.+++.|+|.++++++|+|+|+|++|++.+.+++++|+|+||||++|+|++||++||.|+
T Consensus 319 ~~~~~~alG~~l~~~~n~i~g~~~~~~~p~~~~~~~k~p~~~~~~~~~~~~~~~~~~k~~G~v~~~g~~~~ea~~ka~~~ 398 (1050)
T TIGR01369 319 KVAAKLAVGYGLDELKNPVTGTTPASFEPSLDYVVVKIPRWDFDKFAGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRS 398 (1050)
T ss_pred HHHHHHHcCCCchhhcCCCcCcCccccCcCCCeEEEEEEeCCCCCCCcccCCcCcccceeeEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccCCCCCCCCCCCCCHHHHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhCCC
Q 001014 487 LECGFSGWGCSNVKELDWDWEQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSV 566 (1190)
Q Consensus 487 l~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~ 566 (1190)
|+.+..|+...... ..++++|++.|+||+++|||+++||||||||++||+++|+||+|||+||++|+++|++|+.+.+
T Consensus 399 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~ 476 (1050)
T TIGR01369 399 LEIGATGFDLPDRE--VEPDEDLWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKL 476 (1050)
T ss_pred hccCCCCCCccccC--CCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99988888654321 3578999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCCCHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeecccc-CCCCCCCCcE
Q 001014 567 SNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFE-CESAPTQKKK 645 (1190)
Q Consensus 567 ~~~~~~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~-~~~~~~~~~k 645 (1190)
.+++.+.|++||++||||+|||++|++++++||++|++++|.|+||+||||||||++.||||||||+.+ ++..++++||
T Consensus 477 ~~~~~~~~~~~k~~g~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~~k 556 (1050)
T TIGR01369 477 TELDPELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKK 556 (1050)
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcccCCCCce
Confidence 457899999999999999999999999999999999999999999999999999999999999999987 7777788899
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQ 725 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~ 725 (1190)
|||||+|++||||++|||||+++++++|+++||+++++|+||++++++++.+|++|++|.+.+.++++++++++|+|+++
T Consensus 557 vlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~ 636 (1050)
T TIGR01369 557 VLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQ 636 (1050)
T ss_pred EEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh
Q 001014 726 FGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI 805 (1190)
Q Consensus 726 ~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i 805 (1190)
++++++..++..|+ +.| ++++|+++++++.++||.+|+++|+++|||+|++..+.+.+++.++++++
T Consensus 637 ~gg~~~~~la~~le----------~~G---i~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~i 703 (1050)
T TIGR01369 637 FGGQTPLNLAKALE----------EAG---VPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEI 703 (1050)
T ss_pred cCcHhHHHHHHHHH----------HCC---CcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhc
Confidence 99999989999999 889 99999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecccc
Q 001014 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGV 885 (1190)
Q Consensus 806 gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~ 885 (1190)
|||+||||+++.||+||.+|+|.+||.++++++...+..++++||+||++|.|++|++++|+ |++++.++++|+++.|+
T Consensus 704 gyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~~~~gv 782 (1050)
T TIGR01369 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHIEEAGV 782 (1050)
T ss_pred CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEeecccCC
Confidence 99999999999999999999999999999999877777889999999966999999999994 68999999999999999
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHH
Q 001014 886 HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAA 965 (1190)
Q Consensus 886 ~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~ 965 (1190)
|+|++.+.+|++.++++..+++++++.+++++||++|++|+||++ ++|++||||||||++++.+++++++|+|++++++
T Consensus 783 ~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~-~~~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~ 861 (1050)
T TIGR01369 783 HSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAV-KDGEVYVIEVNPRASRTVPFVSKATGVPLIKLAT 861 (1050)
T ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEE-ECCeEEEEEEeCCCCchHHHHHHHHCCCHHHHHH
Confidence 999999999998999999999999999999999999999999999 6789999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCcee
Q 001014 966 LVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVF 1045 (1190)
Q Consensus 966 ~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~ 1045 (1190)
++++|.++.+++...++.+++++||.|+|||++++++|+.||+||+|||||||+|+|++||+.||+.++++++|..|.+|
T Consensus 862 ~~~lG~~l~~~~~~~~~~~~~~~vK~p~f~~~~~~~~d~~lg~emkstge~~~~g~~~~~a~~ka~~~~~~~~p~~~~~~ 941 (1050)
T TIGR01369 862 RVMLGKKLEELGVGKEKEPKYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKAQLSSGNRIPKKGSVL 941 (1050)
T ss_pred HHHcCCCccccccccCCCCCeEEEEeccCChhhcCCCCCcCCceeEecCceEecCCCHHHHHHHHHHhCCCCcCCCCeEE
Confidence 99999999987654456679999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHhHHHcCcEEEEEEcCC-CCCCCCc
Q 001014 1046 LSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVANGQIQMMVITSS-GDSLDQI 1124 (1190)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~~i~~~~i~lvint~~-~~~~~~~ 1124 (1190)
+++++.+|+.+.++++.|.++||+|+||+||+++|+++||+++.|.|++|++||+.|+|++|+||+|||||+ ++.. .+
T Consensus 942 ~~~~~~~k~~~~~~~~~l~~~g~~~~at~gta~~l~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~~~~~~~-~~ 1020 (1050)
T TIGR01369 942 LSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTTSKGAGT-AT 1020 (1050)
T ss_pred EEeccCchHHHHHHHHHHHHCCCEEEEechHHHHHHHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECCCCCccc-cc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 4444 78
Q ss_pred ccHHHHHHHHHCCCcEEccHHHHHHHHHHH
Q 001014 1125 DGLKLRRRGLAYKVPVITTVSGALANAEAI 1154 (1190)
Q Consensus 1125 d~~~iRr~A~~~~ip~~T~~~~a~a~~~al 1154 (1190)
|||+|||+|+++||||||++++|++++++|
T Consensus 1021 ~g~~iRr~Ai~~~ip~~t~~~~a~~~~~~~ 1050 (1050)
T TIGR01369 1021 DGYKIRREALDYGVPLITTLNTAEAFAEAL 1050 (1050)
T ss_pred ccHHHHHHHHHcCCCEEecHHHHHHHHhhC
Confidence 999999999999999999999999999874
No 4
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.3e-190 Score=1840.76 Aligned_cols=1065 Identities=65% Similarity=1.040 Sum_probs=1016.7
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK 165 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~ 165 (1190)
||++.+++||||||+|++.|||++||||||.+++++|+++|++|++++++|++++++..++|..|+.|++.+.+.+++++
T Consensus 1 m~~~~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~ 80 (1066)
T PRK05294 1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEK 80 (1066)
T ss_pred CCCCCCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIAN 245 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~ 245 (1190)
+++|+|+|+++|+++++.+..+.+++.|+++|++++|+++++++.++||..+|++|+++|+|+|++..+++.+++.++++
T Consensus 81 e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~ 160 (1066)
T PRK05294 81 ERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAE 160 (1066)
T ss_pred HCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 246 EIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 246 ~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
++| ||+||||+++.||+|+.+|++.+||.+++++.+..++.++++||+||+||+|+++++++|.+|+++.+|.+++++|
T Consensus 161 ~ig-~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~~dp 239 (1066)
T PRK05294 161 EIG-YPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDP 239 (1066)
T ss_pred HcC-CCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeeeccc
Confidence 999 9999999999999999999999999999988777666678999999999999999999999999999999999999
Q ss_pred CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCH
Q 001014 326 MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPI 405 (1190)
Q Consensus 326 ~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l 405 (1190)
.++|+|++...+|+++++++.+++++++|.+++++||+.+|++||||++++++|++||+|||||+++++.+++++||+|+
T Consensus 240 ~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~s~~tG~pl 319 (1066)
T PRK05294 240 MGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPI 319 (1066)
T ss_pred cceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCcceeeeeHhhCCCH
Confidence 99999999889999889999999999999999999999559999999999767899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHH
Q 001014 406 AKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALR 485 (1190)
Q Consensus 406 ~~~~~~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~ 485 (1190)
.+..++.++|+++.++.|.+++.+.++|+|.++++++|+|+|+|++|++.+.+++|+|+++||||++|+|++||++||.|
T Consensus 320 ~~~~~~~~lG~~l~~m~n~~~g~~~~~~~p~~~~v~~k~p~~~~~~y~k~~~~~g~~mrk~G~v~~~g~~~e~~~~k~~~ 399 (1066)
T PRK05294 320 AKVAAKLAVGYTLDEIKNDITGKTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALR 399 (1066)
T ss_pred HHHHHHHHcCCChHHhcCcccCCCcccccccCCeEEEEccCCccccccCCCCCccceecccceEEEEcCCHHHHHHHHHH
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccCCCCCCCCCCCCCHHHHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhCC
Q 001014 486 SLECGFSGWGCSNVKELDWDWEQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQS 565 (1190)
Q Consensus 486 ~l~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~ 565 (1190)
+++.+..|+..+.+. +.++++|++.|+||+++|+|+++||||||+|+++|+++|+||+|||+||++|+++|++|+...
T Consensus 400 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~ 477 (1066)
T PRK05294 400 SLEIGVTGLDEDLFE--EESLEELREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENG 477 (1066)
T ss_pred hcCCCCCCCCccccc--cCCHHHHHhhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999998888753332 567899999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCCCCCcE
Q 001014 566 VSNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAPTQKKK 645 (1190)
Q Consensus 566 ~~~~~~~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~k 645 (1190)
.+++.+.|++||++||||+|||++|++++++||++|++++|.|+||+||||||||++.||||||||+.+||+.++++||
T Consensus 478 -~~~~~~~~~~~k~~g~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~d~~a~e~~~~~~~~y~~~~~~~~~~~~~~kk 556 (1066)
T PRK05294 478 -LPLDAELLREAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPSDRKK 556 (1066)
T ss_pred -CCCCHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCcceeECCCCCCCccCCCce
Confidence 2368999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQ 725 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~ 725 (1190)
|||||+|++||||++|||||+++++++|+++|++++++|+||++++++++.+|++|++|.+.|.++++++++++|+|+++
T Consensus 557 vlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~ 636 (1066)
T PRK05294 557 VLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQ 636 (1066)
T ss_pred EEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh
Q 001014 726 FGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI 805 (1190)
Q Consensus 726 ~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i 805 (1190)
+|++++++++..|+ +.| ++++|++++++++++||..|+++|+++|||+|++..+.+.+++.++++++
T Consensus 637 ~g~~~~~~la~~le----------~~G---i~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~i 703 (1066)
T PRK05294 637 FGGQTPLKLAKALE----------AAG---VPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEI 703 (1066)
T ss_pred eCchhHHHHHHHHH----------HCC---CceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhc
Confidence 99999999999999 899 99999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcc-eEEEeEEecCCCcEEEEeeeeeeeccc
Q 001014 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAI-EIDVDALADSCGNVVIGGIMEHIEQAG 884 (1190)
Q Consensus 806 gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~-E~~v~v~~d~~G~v~~~~i~e~~~~~g 884 (1190)
|||+||||+++.||+||.+++|.+||..+++.+...+..++++||+|| .|. |++|++++|++ .+++.++++|+++.|
T Consensus 704 gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI-~G~~E~sV~~v~dg~-~v~i~~i~e~i~~~g 781 (1066)
T PRK05294 704 GYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFL-EGAIEVDVDAICDGE-DVLIGGIMEHIEEAG 781 (1066)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecC-CCCEEEEEEEEecCC-eEEEeeeEEeeeecc
Confidence 999999999999999999999999999999988776777899999999 565 99999999865 677888999999999
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHH
Q 001014 885 VHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYA 964 (1190)
Q Consensus 885 ~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~ 964 (1190)
+|+|++.+.+|+..++++..+++++++.+++++||++|++|+||++ ++|++||||||||++++.+++++++|+|+++++
T Consensus 782 v~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~-~~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~ 860 (1066)
T PRK05294 782 VHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAV-KDDEVYVIEVNPRASRTVPFVSKATGVPLAKIA 860 (1066)
T ss_pred ccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEE-ECCeEEEEEEecCCCccHHHHHHHhCccHHHHH
Confidence 9999999999998999999999999999999999999999999999 688999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCce
Q 001014 965 ALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTV 1044 (1190)
Q Consensus 965 ~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~ 1044 (1190)
+++++|++++++++.....+++++||.|+|||++|+++|+.||++|+|||||||+|+|++||+.||+.++++++|..|++
T Consensus 861 ~~~~lG~~l~~~~~~~~~~~~~~~vk~p~fs~~~~~~~~~~lg~~m~stge~~~~~~~~~~a~~k~~~~~~~~~p~~~~~ 940 (1066)
T PRK05294 861 ARVMLGKKLAELGYTKGLIPPYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKAQLAAGNRLPTSGTV 940 (1066)
T ss_pred HHHHcCCChhhcCCCccCCCCceEEEeccCChhhccCCCCccCceeeecCceeecCCCHHHHHHHHHHhcccccCCCCeE
Confidence 99999999998876544445899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHhHHHcCcEEEEEEcCCCCCCCCc
Q 001014 1045 FLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVANGQIQMMVITSSGDSLDQI 1124 (1190)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~~i~~~~i~lvint~~~~~~~~~ 1124 (1190)
|+++.+.||+.+.++++.|.++||+|+||.||+++|+++||+++.|.|++|++|++.|+|++|+||+|||||+++.. .+
T Consensus 941 lisv~~~dK~~l~~~a~~l~~~G~~i~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~~~~~-~~ 1019 (1066)
T PRK05294 941 FLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPTGRQA-IR 1019 (1066)
T ss_pred EEEeccccHHHHHHHHHHHHHcCCEEEEccHHHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCCCccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987554 78
Q ss_pred ccHHHHHHHHHCCCcEEccHHHHHHHHHHHHhccCCCcccccchhhh
Q 001014 1125 DGLKLRRRGLAYKVPVITTVSGALANAEAIRSLKSNTVTMTALQDFF 1171 (1190)
Q Consensus 1125 d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~~~~~~~~~~~l~~~~ 1171 (1190)
|||.|||.|+++||||||++++|++++++|+..+.+++++.+||+|+
T Consensus 1020 ~g~~iRr~Av~~~ip~~T~~~~a~~~v~al~~~~~~~~~v~~l~ey~ 1066 (1066)
T PRK05294 1020 DGFSIRRAALEYKVPYITTLAGARAAVKAIEALKFGELEVRSLQEYH 1066 (1066)
T ss_pred ccHHHHHHHHHcCCCEEecHHHHHHHHHHHHhccCCCceEEEhhhcC
Confidence 99999999999999999999999999999976554558899999983
No 5
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=8.3e-190 Score=1620.01 Aligned_cols=1031 Identities=44% Similarity=0.717 Sum_probs=989.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
+.+||||+|+|.+.|||+.||||||.|++++||+.|+.++++++|.+++++...+||.+|+.|.+++.+..+++.++||+
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~ 455 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDG 455 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCe
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
++.++|||+++++.+.+.++++++.++++++|++.+++...+|+.+|.+.|++.+.++.++..+++.+++.++++.+| |
T Consensus 456 il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~l~-y 534 (1435)
T KOG0370|consen 456 ILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAERLG-Y 534 (1435)
T ss_pred EEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHhHHHHHHHHHHhcC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCccc
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~ 330 (1190)
|+|++.++..||.|..+++|.+||......++..+ .+++||+.+.||+|+++++++|..++|+.+|.+|++||.|+||
T Consensus 535 pvivRaayalgglgSgfa~n~eeL~~l~~~a~a~s--~QilvekSlkGwkevEyevvrDa~~nciTvcnmen~Dplgiht 612 (1435)
T KOG0370|consen 535 PVIVRAAYALGGLGSGFANNEEELQDLAAQALALS--PQILVEKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHT 612 (1435)
T ss_pred HHHHHHHHHhcCccccccccHHHHHHHHhhccccC--ceeeehhhhccccceEEEEEeccccchhhhcCCcccCcceeec
Confidence 99999999999999999999999999999888874 5999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHH
Q 001014 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAA 410 (1190)
Q Consensus 331 g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~ 410 (1190)
|+++.++|+|||++++++.+|..+.+++++||+ +|-||||+.++|.+-++++||+|.|++++++|++++|||||++.++
T Consensus 613 GdSiVvapsqtlsd~ey~mlrttaikVirhlgv-vGEcniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aA 691 (1435)
T KOG0370|consen 613 GDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGV-VGECNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAA 691 (1435)
T ss_pred cceEEEeeccccChHHHHHHHhcchhheeccCC-cccccceeeecccceeEEEEEEEeEEeehhhhhccCccCcHHHHHH
Confidence 999999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhhcC
Q 001014 411 KLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLECG 490 (1190)
Q Consensus 411 ~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~~~ 490 (1190)
++++|.+|++++|.+++.++++|||++||+++|+|+|+..+|..+..++++.|||+|+||++||++|||+|||+|+++..
T Consensus 692 Klalg~~lpe~~n~Vt~~T~AcFEpslDY~v~KiprWDl~kf~~vs~~igssmKSvgEvm~iGR~feea~QKalr~vd~~ 771 (1435)
T KOG0370|consen 692 KLALGIPLPELKNSVTKTTTACFEPSLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVGEVMAIGRTFEEAFQKALRMVDPS 771 (1435)
T ss_pred HHhcCcccccCCcccccceecccCcchhheeeecccccHHHHHHHHHhhchhhhhhhhhhhhhhhHHHHHHHHHhhcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCHHHHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 001014 491 FSGWGCSNVKELDWDWEQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSVSNMT 570 (1190)
Q Consensus 491 ~~g~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1190)
..||... ...++|.+.|..|+|+|+|++++|+..|||+|++++||+||+|||++|++|+++.+.|..+...+++
T Consensus 772 ~~Gf~~~------~~~~~~~~eL~~ptd~r~faia~a~~~~~svd~~~elt~IdkWFL~k~~~i~~~~~~l~~~~~~~l~ 845 (1435)
T KOG0370|consen 772 LLGFMST------PFLDDLDEELSTPTDRRVFAIAAALAKGYSVDRIHELTRIDKWFLYKLMNIVNIYKLLESHSLSSLP 845 (1435)
T ss_pred hcCcccc------cchhhHHHHhcCCccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 9999732 2244599999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCCCCCcEEEEEC
Q 001014 571 KDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAPTQKKKVLILG 650 (1190)
Q Consensus 571 ~~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~kVlIlG 650 (1190)
.++|++||+.||||+|||+..+.+|.+||++|+++||+|.+|+|||.||||||.|+|+|.||+....+...+.+.++|||
T Consensus 846 ~~ll~~AK~~GFsD~QIa~~i~s~El~vR~~R~~~gi~P~VKqIDTvAaE~Pa~TNYLY~tyn~~~hDv~F~~~g~mVlG 925 (1435)
T KOG0370|consen 846 KELLLRAKKLGFSDKQIAKFIGSTELAVRRLRKELGIHPFVKQIDTVAAEFPAQTNYLYTTYNATEHDVDFNEHGVMVLG 925 (1435)
T ss_pred HHHHHHHHHcCCcHHHHHHHhCccHHHHHHHHHhcCCCchhhhhhhhhhcCccccceEEEEecCcccccccCCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999988777888889999999
Q ss_pred CCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCch
Q 001014 651 GGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQT 730 (1190)
Q Consensus 651 ~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~ 730 (1190)
+|.+|||.++|||||++.+++.||++|+++|++|+||+++++|||.+|++||+.+++|.++++.+.|++.++|+.+|||.
T Consensus 926 sGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~ 1005 (1435)
T KOG0370|consen 926 SGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEGIIISVGGQL 1005 (1435)
T ss_pred ccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhHhhhhhhhhhhhhhhccCCceEEEecCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEE
Q 001014 731 PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVV 810 (1190)
Q Consensus 731 ~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvv 810 (1190)
+.++|..|. +.| ++++|++|+.|+.++||.+|.++|.+.||.+|+|...++.+++.+|+++.||||+
T Consensus 1006 pnNiA~~L~----------r~~---~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP~l 1072 (1435)
T KOG0370|consen 1006 PNNIALKLH----------RNG---VKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVL 1072 (1435)
T ss_pred cchhhhHhH----------hcC---CeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccHHHHHHHHHhcCCceE
Confidence 999999999 999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeeccccccccc
Q 001014 811 VRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDS 890 (1190)
Q Consensus 811 vKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~ 890 (1190)
|+|+|..+|..|.++++++||+.+++.+...++++|++|.+||++.+|++||++.. +|+++...+.||++++|+|+||.
T Consensus 1073 vRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSEHvEnAGVHSGDA 1151 (1435)
T KOG0370|consen 1073 VRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISEHVENAGVHSGDA 1151 (1435)
T ss_pred ecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcccceechhhhcc-CCeEEEEehhhhhhcccccCCce
Confidence 99999999999999999999999999999999999999999999999999999986 68999999999999999999999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcC
Q 001014 891 ACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 891 ~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG 970 (1190)
....||+.++++..+++++++.++++++.+.|++|+||+. +++++.|||||-|.++++||+++..|+|+.+++.++++|
T Consensus 1152 tlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~-k~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~i~g 1230 (1435)
T KOG0370|consen 1152 TLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIA-KDNELKVIECNVRASRSFPFVSKTLGVDFIALATRAIMG 1230 (1435)
T ss_pred eEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEe-cCCeEEEEEeeeeeeccccceehhcCchHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCC
Q 001014 971 KSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLND 1050 (1190)
Q Consensus 971 ~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~ 1050 (1190)
.+++...+ ..+++++||.|.|+|.++.|+|+.||.||.|||||.++|.+.-||+.||+.+.+|++|..+ +++++..
T Consensus 1231 ~~~~~~~~---~~~dyV~vKvPqFSf~RLagADp~LgvEMaSTGEVAcFG~~~~eaylkam~sTgF~iPk~~-i~i~ig~ 1306 (1435)
T KOG0370|consen 1231 VPVPPDLL---LHPDYVAVKVPQFSFSRLAGADPVLGVEMASTGEVACFGEDRYEAYLKAMLSTGFKIPKKN-ILISIGS 1306 (1435)
T ss_pred CCCCCccc---cCCCeEEEEccccccccccCCCceeeeEeccccceeecccchHHHHHHHHHhcCccccCCC-eEEEecc
Confidence 99886542 3349999999999999999999999999999999999999999999999999999999987 6666654
Q ss_pred CChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCC-CcHHhHHHcCcEEEEEEcCCCCCCCCcccHHH
Q 001014 1051 LTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGR-PHAGDMVANGQIQMMVITSSGDSLDQIDGLKL 1129 (1190)
Q Consensus 1051 ~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~-~~~~~~i~~~~i~lvint~~~~~~~~~d~~~i 1129 (1190)
. |+++.+.++.|..+||+++||.||++|+.++- ..+. ..|+. ..+.+.++++.|++|||.|..... .++||++
T Consensus 1307 ~-k~ell~~~~~l~~~gy~lyat~~t~d~~~~~~-~~~~---~~~~~~~~l~~~~~~~~i~lvinlpr~~~~-~~~~Y~~ 1380 (1435)
T KOG0370|consen 1307 Y-KPELLPSARDLAKLGYKLYATNGTADFYLENK-YAEV---SEEPTNDKLRELLANYNIDLVINLPRPSSF-VDHGYKT 1380 (1435)
T ss_pred c-hHHHHHHHHHHHhcCceeEEeccchhhhhccC-Chhh---ccCCChHHHHHHHhcCceeEEEecCCcccc-cccCcee
Confidence 3 99999999999999999999999999998772 2222 12222 348999999999999999974333 7899999
Q ss_pred HHHHHHCCCcEEccHHHHHHHHHHHHh
Q 001014 1130 RRRGLAYKVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1130 Rr~A~~~~ip~~T~~~~a~a~~~al~~ 1156 (1190)
||+|+|++||++|++++|+.|+++|+.
T Consensus 1381 RR~AvD~~ipLit~~kcaklf~eal~~ 1407 (1435)
T KOG0370|consen 1381 RRLAVDFSIPLITDVKCAKLFVEALKE 1407 (1435)
T ss_pred eeeecccCCceeecchHHHHHHHHHhh
Confidence 999999999999999999999999973
No 6
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-75 Score=646.50 Aligned_cols=393 Identities=69% Similarity=1.122 Sum_probs=385.9
Q ss_pred EcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEecCCC
Q 001014 98 LGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPTMGG 177 (1190)
Q Consensus 98 iG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g 177 (1190)
||+||+.|||++||||||.++|++|++.|++|+++++||++.+++..++|.+|+.|++.+.+.++++++++|+++|+++|
T Consensus 1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~gg 80 (400)
T COG0458 1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGG 80 (400)
T ss_pred CCCCceeeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecC
Q 001014 178 QTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPA 257 (1190)
Q Consensus 178 ~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~ 257 (1190)
|++++++..+.+.++|+++|++++|++.+++++++||.+|+++|+++|+|+| +...++.+++.+..+.+| |||||||+
T Consensus 81 qt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig-~PvIVrP~ 158 (400)
T COG0458 81 QTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIG-YPVIVKPS 158 (400)
T ss_pred cchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcC-CCEEEecC
Confidence 9999999999999999999999999999999999999999999999999999 778899999999999999 99999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEe
Q 001014 258 FTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVA 337 (1190)
Q Consensus 258 ~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~ 337 (1190)
++.||.|..+++|.+||.+.....+..++..++++||+|.||+|+++++++|.+++++++|.+++++|+|+|+|+++..+
T Consensus 159 ~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~va 238 (400)
T COG0458 159 FGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVA 238 (400)
T ss_pred cCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccccceeeec
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCCC
Q 001014 338 PAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYS 417 (1190)
Q Consensus 338 Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~~ 417 (1190)
|++++++..++.+++.+.++++.||+. |.+++||+++|.++++|+||+|||++++++|++++||||+++.+.++++|+.
T Consensus 239 paqtl~d~eyq~~r~~~~~iir~igi~-G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~ 317 (400)
T COG0458 239 PAQTLTDKEYQMLRDAAIKVIREIGIE-GGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYT 317 (400)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccc-CCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHHHhhcccC
Confidence 999999999999999999999999997 9999999999977899999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhhcCccC
Q 001014 418 LDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLECGFSG 493 (1190)
Q Consensus 418 l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~~~~~g 493 (1190)
+++++|++++.+++.|+|++||+++|+|+|+|++|++++.+++++||++|+||++||||+||++||+|+|+.+..|
T Consensus 318 l~Ei~n~it~~t~a~fePsldyvv~k~pr~~f~kf~~~~~~l~~~mks~gevm~igr~f~eal~ka~~~l~~~~~~ 393 (400)
T COG0458 318 LDEIRNDITGRTPASFEPSLDYVVTKIPRFDFEKFPGADRRLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGLAG 393 (400)
T ss_pred chhhcCccccccccccCCccceeeeecCCCCcccccccccceeeeeeccceEEEecchHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976555
No 7
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=9.8e-60 Score=607.07 Aligned_cols=396 Identities=35% Similarity=0.599 Sum_probs=367.5
Q ss_pred cCCCCCCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHh
Q 001014 635 ECESAPTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVI 714 (1190)
Q Consensus 635 ~~~~~~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~ 714 (1190)
.+|...++.|||||||+|+++|||+.|||||+.+++++|+++||+|+++|+||.+.+++.+.+|+.|++|.+.+.+.+++
T Consensus 15 ~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii 94 (1102)
T PLN02735 15 TKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVI 94 (1102)
T ss_pred ccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHH
Confidence 46677778899999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC
Q 001014 715 DLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS 794 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s 794 (1190)
++++||+|++++|+++.++++..|. +.+.|...| ++++|++++++++++||..|+++|+++|||+|++..+.+
T Consensus 95 ~~e~~D~Iip~~gg~~gl~la~~l~----~~g~Le~~G---I~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s 167 (1102)
T PLN02735 95 AKERPDALLPTMGGQTALNLAVALA----ESGILEKYG---VELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATT 167 (1102)
T ss_pred HHhCCCEEEECCCchhhHHHHHHHh----hhCHHHHCC---CEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCC
Confidence 9999999999999999887777654 445566899 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEE
Q 001014 795 EADALAIAKEIG-YPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVI 873 (1190)
Q Consensus 795 ~~e~~~~~~~ig-yPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~ 873 (1190)
.+++.++++++| ||+||||++++||+|+.+|+|.+||.++++.+...+...+++||+||.+++|++|++++|.+|+++.
T Consensus 168 ~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 168 LDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 999999999999 9999999999999999999999999999998776667789999999955599999999997788888
Q ss_pred EeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCC-CcceeEEEEEe-cCCCEEEEEEccCCCCChhh
Q 001014 874 GGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNV-CGLMNCQYAIT-TSGDVYLLEANPRASRTVPF 951 (1190)
Q Consensus 874 ~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~-~G~~~ief~~d-~~g~~~viEiNpR~~~s~~~ 951 (1190)
++.++++.+.++|.|++....|+++++++..+++++++.+++++||+ .|.+|+||+++ .+|++||||||||++++.++
T Consensus 248 v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l 327 (1102)
T PLN02735 248 ICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSAL 327 (1102)
T ss_pred EeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCCcchh
Confidence 88899988889999999888899899999999999999999999999 59999999998 48899999999999999999
Q ss_pred hhcccCCCHHHHHHHHHcCCCCCCCC--CCc------cccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCH
Q 001014 952 VSKAIGHPLAKYAALVMSGKSLNDLG--FTK------EVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSF 1023 (1190)
Q Consensus 952 ~~~~~G~~l~~~~~~~~lG~~l~~~~--~~~------~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~ 1023 (1190)
+++++|+|++++++++++|.+|.++. ++. ++..+|+++|.|.|||+||++++..||++|||+||||++|+||
T Consensus 328 ~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~~a~~ep~~d~~~~k~p~~~f~~f~~~~~~l~~~mks~ge~m~~gr~~ 407 (1102)
T PLN02735 328 ASKATGFPIAKMAAKLSVGYTLDQIPNDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTF 407 (1102)
T ss_pred hhhhhCCCHHHHHHHHHCCCChhhhccccccccchheeecCCcEEEEcccCCcccccCCCcccceeeeecceEEEecCCH
Confidence 99999999999999999999998763 111 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 001014 1024 PIAFAKAQIAAGQK 1037 (1190)
Q Consensus 1024 ~eA~~ka~~~~~~~ 1037 (1190)
+||++||.++....
T Consensus 408 ~ea~~ka~~~~~~~ 421 (1102)
T PLN02735 408 QESFQKALRSLETG 421 (1102)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988654
No 8
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-58 Score=511.92 Aligned_cols=380 Identities=37% Similarity=0.612 Sum_probs=362.5
Q ss_pred ECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCC
Q 001014 649 LGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGG 728 (1190)
Q Consensus 649 lG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~ 728 (1190)
+|+|+..|||..||||++.+++++|++.||+|+++|+||.+..++..++|+.|++|.+.|.+..+++++++|+++|++|+
T Consensus 1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~gg 80 (400)
T COG0458 1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGG 80 (400)
T ss_pred CCCCceeeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCc
Q 001014 729 QTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYP 808 (1190)
Q Consensus 729 ~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyP 808 (1190)
|++++++..++ +.+.+.+.| ++++|++++++++++||.+|+++|+++|+|+| ...+++.+++.++.+.+|||
T Consensus 81 qt~Ln~~~~l~----e~g~l~~~g---V~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~P 152 (400)
T COG0458 81 QTALNAALELK----EKGVLEKYG---VEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYP 152 (400)
T ss_pred cchhhHHHHHH----HhcchhhcC---CEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcCCC
Confidence 99999888877 778888899 99999999999999999999999999999999 77889999999999999999
Q ss_pred EEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeeccccccc
Q 001014 809 VVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSG 888 (1190)
Q Consensus 809 vvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~g 888 (1190)
|||||+++.||.|..+++|.+||.+........++..++++||+|.+++|+.+.+++|.++++++.+.++++++.|+|.|
T Consensus 153 vIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtg 232 (400)
T COG0458 153 VIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTG 232 (400)
T ss_pred EEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccccccccc
Confidence 99999999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecC-CCEEEEEEccCCCCChhhhhcccCCCHHHHHHHH
Q 001014 889 DSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTS-GDVYLLEANPRASRTVPFVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 889 d~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~-g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~ 967 (1190)
|+..+.|++++++..++.++..+.++++.||+.|.+|+||.++++ +++|+||+|||++++..+.++++|+++++++.++
T Consensus 233 dsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakl 312 (400)
T COG0458 233 DSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKL 312 (400)
T ss_pred ceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHHHh
Confidence 999999999999999999999999999999999999999999754 6999999999999999999999999999999999
Q ss_pred HcCCCCCCCC--CCc------cccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 968 MSGKSLNDLG--FTK------EVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 968 ~lG~~l~~~~--~~~------~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
+.|..+.++. ++. ++..+|+.+|.|.|+|.+|++++..||..|+|+|+||++|++|+||++||.++...
T Consensus 313 a~g~~l~Ei~n~it~~t~a~fePsldyvv~k~pr~~f~kf~~~~~~l~~~mks~gevm~igr~f~eal~ka~~~l~~ 389 (400)
T COG0458 313 AVGYTLDEIRNDITGRTPASFEPSLDYVVTKIPRFDFEKFPGADRRLGTQMKSVGEVMAIGRTFEEALQKALRSLEI 389 (400)
T ss_pred hcccCchhhcCccccccccccCCccceeeeecCCCCcccccccccceeeeeeccceEEEecchHHHHHHHHHHhhcc
Confidence 9999888753 111 57789999999999999999999999999999999999999999999999998754
No 9
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=7.6e-55 Score=565.42 Aligned_cols=390 Identities=38% Similarity=0.627 Sum_probs=360.5
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
.+.|||||||||++.|||+.||||++.+++++|++.|++|+++++||.+..++...+|..|++|.+.+.+.+++++++||
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D 84 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPD 84 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcC
Confidence 46789999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++.+|+++.++++..+. +.+.|++.| ++++|++++++++++||..|+++|+++|||+|++..+.+.+++.+
T Consensus 85 ~Iip~~gg~~~l~~a~~l~----~~g~Le~~g---v~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~ 157 (1068)
T PRK12815 85 ALLATLGGQTALNLAVKLH----EDGILEQYG---VELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALA 157 (1068)
T ss_pred EEEECCCCchHHHHHHHHH----hcCHHHHCC---CEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHH
Confidence 9999999998877776554 445555889 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+++++|||+||||+++.||+|+.+++|.+||.++++.+...+...+++||+||++.+|++|++++|.+|+++.++.++++
T Consensus 158 ~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~~ 237 (1068)
T PRK12815 158 FAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENI 237 (1068)
T ss_pred HHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEeceec
Confidence 99999999999999999999999999999999999887766556789999999666899999999998999999999999
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec-CCCEEEEEEccCCCCChhhhhcccCCC
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPRASRTVPFVSKAIGHP 959 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~-~g~~~viEiNpR~~~s~~~~~~~~G~~ 959 (1190)
++.|+|.|++....|+++++++..+++++++.+++++||++|++++||+++. +|++||||+|||++++.+++++++|+|
T Consensus 238 ~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~p 317 (1068)
T PRK12815 238 DPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYP 317 (1068)
T ss_pred ccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccchhhhhHhhCCc
Confidence 9999999999888898889999999999999999999999999999999975 478999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCC--CCc------cccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHH
Q 001014 960 LAKYAALVMSGKSLNDLG--FTK------EVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQ 1031 (1190)
Q Consensus 960 l~~~~~~~~lG~~l~~~~--~~~------~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~ 1031 (1190)
+++.++++++|.+|+++. +.. ++..+++.+|.|.|+|.+|+..+..+|..|||+||||++|+|++||++||.
T Consensus 318 l~~~~~~~alG~~l~ei~~~i~g~~~a~~ep~~d~~~~k~p~~~f~~y~~~~~~~g~kmks~G~v~~ig~~~eea~~ka~ 397 (1068)
T PRK12815 318 IAKIAAKLAVGYTLNELKNPVTGLTYASFEPALDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKAL 397 (1068)
T ss_pred HHHHHHHHHcCCChHHhcCCccCCcccccCCccceEEEEeccCccccccCccccccceecccceEEEecCCHHHHHHHHH
Confidence 999999999999987642 111 356678889999999999999999999999999999999999999999999
Q ss_pred HHcCCC
Q 001014 1032 IAAGQK 1037 (1190)
Q Consensus 1032 ~~~~~~ 1037 (1190)
++....
T Consensus 398 ~~~~~~ 403 (1068)
T PRK12815 398 RSLEIK 403 (1068)
T ss_pred HhhcCC
Confidence 998653
No 10
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.5e-53 Score=552.45 Aligned_cols=381 Identities=42% Similarity=0.711 Sum_probs=352.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
+.+||||||+|++.|||+.||||++.+++++|+++|++|+++++||.+.+++...+|+.|++|++.+.+.++++++++|+
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dg 632 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKG 632 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCE
Confidence 56899999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|++.++++++++++. .|++.|++++|++++++.+++||..|+++|+++|||+|++..+.+.+++.++++++| |
T Consensus 633 Vi~~~g~~~~~~la~------~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~ig-y 705 (1066)
T PRK05294 633 VIVQFGGQTPLKLAK------ALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIG-Y 705 (1066)
T ss_pred EEEEeCchhHHHHHH------HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcC-C
Confidence 999999998876544 467789999999999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCccc
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~ 330 (1190)
|+||||+++.||+|+.+|+|.+||.+++..+...+..++++||+||+|++|+++++++|++ ++++.+.++++.+.++|.
T Consensus 706 PvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e~i~~~gv~~ 784 (1066)
T PRK05294 706 PVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIMEHIEEAGVHS 784 (1066)
T ss_pred CeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEEeeeeccccC
Confidence 9999999999999999999999999999998876667889999999996699999998654 566666778888889999
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHH
Q 001014 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAA 410 (1190)
Q Consensus 331 g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~ 410 (1190)
|++....|+.+++++..+++++++.+++++||+. |++|+||+++ ++++||||||||++++.+++++++|+|+++.++
T Consensus 785 Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~-G~~~vqf~~~--~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~ 861 (1066)
T PRK05294 785 GDSACSLPPQTLSEEIIEEIREYTKKLALELNVV-GLMNVQFAVK--DDEVYVIEVNPRASRTVPFVSKATGVPLAKIAA 861 (1066)
T ss_pred CCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCe-eeEEEEEEEE--CCeEEEEEEecCCCccHHHHHHHhCccHHHHHH
Confidence 9999999988899999999999999999999996 9999999998 778999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhhcC
Q 001014 411 KLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLECG 490 (1190)
Q Consensus 411 ~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~~~ 490 (1190)
++++|.+++++... ..++| +|+.+|.|.|+|.++++++..|++.|+|+|+||++|+|++||+.||+++....
T Consensus 862 ~~~lG~~l~~~~~~------~~~~~--~~~~vk~p~fs~~~~~~~~~~lg~~m~stge~~~~~~~~~~a~~k~~~~~~~~ 933 (1066)
T PRK05294 862 RVMLGKKLAELGYT------KGLIP--PYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKAQLAAGNR 933 (1066)
T ss_pred HHHcCCChhhcCCC------ccCCC--CceEEEeccCChhhccCCCCccCceeeecCceeecCCCHHHHHHHHHHhcccc
Confidence 99999999877321 12556 89999999999999999999999999999999999999999999999997533
No 11
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.1e-52 Score=545.22 Aligned_cols=380 Identities=41% Similarity=0.683 Sum_probs=354.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..+||||||+|++.|||+.||||++.+++++|+++||+|+++++||.+++++...+|..|++|++.+.+.++++++++|+
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idg 632 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEG 632 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCE
Confidence 45799999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|++.++++++.+++. .|++.|++++|++++++..++||..|+++|+++|||+|++..+.+.+++.++++++| |
T Consensus 633 VI~~~gg~~~~~la~------~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~ig-y 705 (1050)
T TIGR01369 633 VIVQFGGQTPLNLAK------ALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIG-Y 705 (1050)
T ss_pred EEEccCcHhHHHHHH------HHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcC-C
Confidence 999999988766654 466789999999999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCccc
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~ 330 (1190)
|+||||+++.||+|+.+|+|.+||.++++++...++.++++||+||+|++|++++++.++ |++++.+.++++...++|.
T Consensus 706 PvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~~~~gv~s 784 (1050)
T TIGR01369 706 PVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHIEEAGVHS 784 (1050)
T ss_pred CEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEeecccCCcC
Confidence 999999999999999999999999999999887777788999999994499999999974 5777777788888889999
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHH
Q 001014 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAA 410 (1190)
Q Consensus 331 g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~ 410 (1190)
|++....|+++++++..+++++++.+++++||+. |++|+||+++ ++++||||||||++++.+++++++|+|+++.++
T Consensus 785 Gds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~-G~~~vqf~~~--~~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~ 861 (1050)
T TIGR01369 785 GDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVK-GLMNIQFAVK--DGEVYVIEVNPRASRTVPFVSKATGVPLIKLAT 861 (1050)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCc-ceEEEEEEEE--CCeEEEEEEeCCCCchHHHHHHHHCCCHHHHHH
Confidence 9999999998899999999999999999999996 9999999998 678999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhhc
Q 001014 411 KLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLEC 489 (1190)
Q Consensus 411 ~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~~ 489 (1190)
++++|.+++++. ...+|..+++.+|.|.|+|.++++++..|++.|+|+|+||++|+|++||+.||+.+...
T Consensus 862 ~~~lG~~l~~~~--------~~~~~~~~~~~vK~p~f~~~~~~~~d~~lg~emkstge~~~~g~~~~~a~~ka~~~~~~ 932 (1050)
T TIGR01369 862 RVMLGKKLEELG--------VGKEKEPKYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKAQLSSGN 932 (1050)
T ss_pred HHHcCCCccccc--------cccCCCCCeEEEEeccCChhhcCCCCCcCCceeEecCceEecCCCHHHHHHHHHHhCCC
Confidence 999999998764 12457779999999999999999999999999999999999999999999999999653
No 12
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=3.3e-51 Score=473.80 Aligned_cols=387 Identities=34% Similarity=0.506 Sum_probs=366.8
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
-..+||+|||+|+..|||.-||||++.|+++++|+.|+.++++|+|..++.+...++|+.|+.|.+.+.+..+++.++||
T Consensus 375 ~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd 454 (1435)
T KOG0370|consen 375 VEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPD 454 (1435)
T ss_pred ccccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+++.++|||++++..-++. +.+.+++.| ++++|++.+++...+||..|.+.|++.+.+..++..+++.+++.+
T Consensus 455 ~il~tfggqtaLncgvel~----k~gvf~~~~---vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~ 527 (1435)
T KOG0370|consen 455 GILLTFGGQTALNCGVELD----KAGVFAQYG---VKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALE 527 (1435)
T ss_pred eEEEecCCccccccceeee----ecccccccc---hhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHhHHHHHHH
Confidence 9999999999988877765 677888899 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+++++|||++++..+..||-|-.++.|++||.+....++.. ..+++||+-+.+++|++.++++|..++++..+-||++
T Consensus 528 aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~--s~QilvekSlkGwkevEyevvrDa~~nciTvcnmen~ 605 (1435)
T KOG0370|consen 528 AAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL--SPQILVEKSLKGWKEVEYEVVRDAYDNCITVCNMENF 605 (1435)
T ss_pred HHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc--CceeeehhhhccccceEEEEEeccccchhhhcCCccc
Confidence 99999999999999999999999999999999988887665 4589999999889999999999999999999999999
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec-CCCEEEEEEccCCCCChhhhhcccCCC
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPRASRTVPFVSKAIGHP 959 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~-~g~~~viEiNpR~~~s~~~~~~~~G~~ 959 (1190)
++.|+|.||++.+.|+++++++.++.++..+.++.++||+.|-+|||+.+++ .-++++||+|.|.+++..+.+++||++
T Consensus 606 DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgyp 685 (1435)
T KOG0370|consen 606 DPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYP 685 (1435)
T ss_pred CcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhhhhccCccCc
Confidence 9999999999999999999999999999999999999999999999999984 568999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCC--CCc------cccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHH
Q 001014 960 LAKYAALVMSGKSLNDLG--FTK------EVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQ 1031 (1190)
Q Consensus 960 l~~~~~~~~lG~~l~~~~--~~~------~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~ 1031 (1190)
|+..+.++.+|.+|+++. .+. ++..+|.++|.|.|.+.||..++..+|..|+|+||||++|++|+||++||.
T Consensus 686 LAy~aAKlalg~~lpe~~n~Vt~~T~AcFEpslDY~v~KiprWDl~kf~~vs~~igssmKSvgEvm~iGR~feea~QKal 765 (1435)
T KOG0370|consen 686 LAYTAAKLALGIPLPELKNSVTKTTTACFEPSLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVGEVMAIGRTFEEAFQKAL 765 (1435)
T ss_pred HHHHHHHHhcCcccccCCcccccceecccCcchhheeeecccccHHHHHHHHHhhchhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999874 111 688999999999999999999999999999999999999999999999999
Q ss_pred HHcCC
Q 001014 1032 IAAGQ 1036 (1190)
Q Consensus 1032 ~~~~~ 1036 (1190)
+..+.
T Consensus 766 r~vd~ 770 (1435)
T KOG0370|consen 766 RMVDP 770 (1435)
T ss_pred hhcCh
Confidence 98754
No 13
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=2.1e-45 Score=440.86 Aligned_cols=396 Identities=26% Similarity=0.329 Sum_probs=325.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC--------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP--------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p--------~~~~~v~~i~ 163 (1190)
++||||+|+|.+ +.+++++++++|+++++++++++..+...+++|+.+..+ ++.+.+.+++
T Consensus 2 ~~kvLIan~Gei-----------a~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a 70 (499)
T PRK08654 2 FKKILIANRGEI-----------AIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVA 70 (499)
T ss_pred cceEEEECCcHH-----------HHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHH
Confidence 579999999987 568999999999999999988887777788999988532 3778999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeee--cCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI--GNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~--v~s~~e~~ 241 (1190)
++.++|+|+|+++ ...++... ...++..|++++||++++++.+.||..+|++|+++|||+|++.. +.+.+++.
T Consensus 71 ~~~~~daI~pg~g-flsE~~~~----a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~ 145 (499)
T PRK08654 71 KKAGADAIHPGYG-FLAENPEF----AKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAK 145 (499)
T ss_pred HHhCCCEEEECCC-ccccCHHH----HHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHH
Confidence 9999999999875 23333322 45688899999999999999999999999999999999988764 78899999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh----cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA----ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++++++| ||+||||+.|+||+|+++|++.+||.++++.... .++++.++||+||+|.+|+++.+++|+.|+++.+
T Consensus 146 ~~a~~ig-yPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l 224 (499)
T PRK08654 146 EIAEEIG-YPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHL 224 (499)
T ss_pred HHHHHhC-CCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEE
Confidence 9999999 9999999999999999999999999999987653 2345689999999988999999999998998877
Q ss_pred EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 318 ~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
+..+.. .....+..+..+|++.++++..++|.+.+.++++++|+. |+++|||+++ ++++||+|||||++++++++
T Consensus 225 ~~recs--iqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~-g~gtVEfl~~--~g~~yflEiNpRlqveh~vt 299 (499)
T PRK08654 225 GDRECS--IQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYE-NAGTVEFLYS--NGNFYFLEMNTRLQVEHPIT 299 (499)
T ss_pred eeeccc--cccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCC-CceEEEEEEE--CCcEEEEEEECCCCCCCcee
Confidence 543211 111225667778988799999999999999999999996 9999999997 78999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCccc-----------cCCCCc-cccCCcCeEEe-eecee---eecccCCCCcccCC
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDI-----------TKKTPA-SFEPSIDYVVT-KIPRF---AFEKFPGSEPLLTT 461 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i-----------~~~~~~-~f~p~~~~v~~-k~p~~---~~~~~~~~~~~l~~ 461 (1190)
+.+||+|++++++++++|.+|+..+.++ +.++|. .|.|+.+.+.. ..|.. ..+.....+..+.+
T Consensus 300 e~~tGvDlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~ 379 (499)
T PRK08654 300 EMVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPP 379 (499)
T ss_pred ehhhCCCHHHHHHHHhcCCCCCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCC
Confidence 9999999999999999999998554332 234553 58899887652 33311 11111111223444
Q ss_pred CCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 462 QMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 462 ~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
..+| +|+||+.|.|++||++|+.++|+ +.+.|+.+| .+.|...|.+|.
T Consensus 380 ~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g~~t~--------~~~~~~~~~~~~ 429 (499)
T PRK08654 380 YYDSMISKLIVWGRTREEAIARMRRALYEYVIVGVKTN--------IPFHKAVMENEN 429 (499)
T ss_pred ccCchhheeeEeCCCHHHHHHHHHHHHhhcEEECccCC--------HHHHHHHhCCHh
Confidence 4554 89999999999999999999996 788887555 678899999986
No 14
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=4.6e-46 Score=418.15 Aligned_cols=386 Identities=25% Similarity=0.386 Sum_probs=340.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECC-------CCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITP-------MTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p-------~~~~~v~~i 162 (1190)
+++||||-+.|.| +..++++++++|++++.|+++++..+.+..+||+.+ +.| ++.+.+++.
T Consensus 1 mf~KiLIANRGEI-----------AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~A 69 (645)
T COG4770 1 MFSKILIANRGEI-----------ACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDA 69 (645)
T ss_pred CcceEEEeccchh-----------hHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHH
Confidence 3579999999998 458999999999999999999999999999999876 766 367899999
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHh----hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecCC
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAES----GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGNT 236 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~----~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s 236 (1190)
+++.+.++|+|++| +|+|+ ..+++.|+.|+||++.+|+.+.||...|.++.+.|+|+.|. ..+.+
T Consensus 70 a~~tGA~AIHPGYG---------FLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd 140 (645)
T COG4770 70 ARRTGAQAIHPGYG---------FLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQD 140 (645)
T ss_pred HHHhCcccccCCcc---------ccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccC
Confidence 99999999999998 66664 57888999999999999999999999999999999998765 35778
Q ss_pred HHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH----hcCCCCcEEEeeecCCCeeeeEEEEEeCCC
Q 001014 237 LDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL----AASLTSQVLVEKSLLGWKEYELEVMRDLAD 312 (1190)
Q Consensus 237 ~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g 312 (1190)
.+++..+++++| ||++||++.|+||+|++++.+.+|+.++++.+. ..++++.++||+|+.-+++++++|+.|++|
T Consensus 141 ~~~~~~~A~eiG-yPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HG 219 (645)
T COG4770 141 AAELVAIAEEIG-YPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHG 219 (645)
T ss_pred HHHHHHHHHhcC-CcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCC
Confidence 899999999999 999999999999999999999999999887665 456789999999999999999999999999
Q ss_pred cEEEE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCC
Q 001014 313 NVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNP 388 (1190)
Q Consensus 313 ~~~~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNp 388 (1190)
|++++ |+.|+.+ ++.+..+|++.|+++.++.|.+.+.+++++.||. |...|||+++. ++.+||+|||.
T Consensus 220 Nvv~LgERdCSlQRRh------QKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~-gAGTVEFivd~-~~~f~FlEMNT 291 (645)
T COG4770 220 NVVHLGERDCSLQRRH------QKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYV-GAGTVEFIVDA-DGNFYFLEMNT 291 (645)
T ss_pred CEEEeeccccchhhhc------chhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCC-cCceEEEEEcC-CCcEEEEEeec
Confidence 99998 8899886 8899999999999999999999999999999996 99999999998 78899999999
Q ss_pred CCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCCc-cccCCcCeEEeeeceeeecccCCC-
Q 001014 389 RVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTPA-SFEPSIDYVVTKIPRFAFEKFPGS- 455 (1190)
Q Consensus 389 R~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~~-~f~p~~~~v~~k~p~~~~~~~~~~- 455 (1190)
|++-.+++++..||+||++++++++.|.+|+..+.++. +++|. .|.|+.+.+.. |.+..-++.
T Consensus 292 RLQVEHPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~----~~~P~~~~vR 367 (645)
T COG4770 292 RLQVEHPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTR----YRPPAGPGVR 367 (645)
T ss_pred ceeccccchhhhhhhHHHHHHHHHhcCCcCCcccccccccceeEEEEEeccCcccCccCCCceeEe----ecCCCCCcee
Confidence 99999999999999999999999999999988766554 56664 59999995543 333222211
Q ss_pred -------CcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 456 -------EPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 456 -------~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
...++..+++ +.+++++|.|++||++++.++|+ +.+.|+.+| ..+|...+.||.
T Consensus 368 vDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~Gi~tn--------~~Fl~al~~~~~ 430 (645)
T COG4770 368 VDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGIATN--------IPFLRALMADPR 430 (645)
T ss_pred cccCcccCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecCcccc--------HHHHHHHhcCcc
Confidence 3345556665 88999999999999999999996 788888766 457888888885
No 15
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=2.2e-44 Score=432.53 Aligned_cols=396 Identities=23% Similarity=0.324 Sum_probs=320.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-C-------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-P-------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p-------~~~~~v~~i~ 163 (1190)
+|||||+|+|.+ +.+++++++++|++|++++++++..+....++|+.+.. | ++.+.+.++|
T Consensus 2 ~kkili~g~g~~-----------~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a 70 (449)
T TIGR00514 2 LDKILIANRGEI-----------ALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAA 70 (449)
T ss_pred cceEEEeCCCHH-----------HHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHH
Confidence 579999999976 57999999999999999998776666667889988753 3 3567899999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~ 241 (1190)
+++++|+|+|+++. ..++... ...++++|++++|++++++++++||..++++|+++|+|+|++. .+.+.+++.
T Consensus 71 ~~~~id~I~pg~g~-~se~~~~----a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~ 145 (449)
T TIGR00514 71 EITGADAIHPGYGF-LSENANF----AEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENV 145 (449)
T ss_pred HHhCCCEEEeCCCc-cccCHHH----HHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHH
Confidence 99999999998852 2233222 3578899999999999999999999999999999999999874 678999999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh----cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA----ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++++++| ||+||||..++||+|+.++++.+||.++++.+.. .+....++||+||+|.+|+++.+++|.+|+++.+
T Consensus 146 ~~~~~ig-~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~ 224 (449)
T TIGR00514 146 RIAKRIG-YPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYL 224 (449)
T ss_pred HHHHHhC-CCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEE
Confidence 9999999 9999999999999999999999999999987643 2345689999999987899999999988888776
Q ss_pred EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 318 ~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
...+. ....+........|++.++++..+++++.+.+++++||+. |++|+||++++ +|++||+|||||++++++++
T Consensus 225 ~~~~~--~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~-G~~~vef~~~~-~g~~~viEiNpR~~~~~~~~ 300 (449)
T TIGR00514 225 GERDC--SIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYR-GAGTVEFLLDK-NGEFYFMEMNTRIQVEHPVT 300 (449)
T ss_pred ecccc--CceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCc-ceEEEEEEEeC-CCCEEEEEEECCCCCCccee
Confidence 42210 0111124455667776799999999999999999999996 99999999996 78899999999999999999
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCC-ccccCCcCeEEe-eec-----eeeecccCCCCccc
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTP-ASFEPSIDYVVT-KIP-----RFAFEKFPGSEPLL 459 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~-~~f~p~~~~v~~-k~p-----~~~~~~~~~~~~~l 459 (1190)
+.+||+|++++++++++|.+++..+.... .+++ ..|.|..+.+.. ..| ++.+...+|. .+
T Consensus 301 ~~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~--~v 378 (449)
T TIGR00514 301 EMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGY--TV 378 (449)
T ss_pred ehhcCCcHHHHHHHHHCCCCCCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCC--Ee
Confidence 99999999999999999999875433222 1223 346788776643 222 3433333332 44
Q ss_pred CCCCC-cEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCCc
Q 001014 460 TTQMK-SVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPNP 518 (1190)
Q Consensus 460 ~~~~~-s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~ 518 (1190)
...++ ++|+||+.|+|++||++++.++++ +.+.|+.+| .+.|.+.|.+|..
T Consensus 379 ~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~tn--------~~~l~~~~~~~~f 431 (449)
T TIGR00514 379 PPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTT--------IPFHQRILEDENF 431 (449)
T ss_pred CccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeCccCC--------HHHHHHHhcChhh
Confidence 44444 489999999999999999999997 777887555 5688888888874
No 16
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.8e-44 Score=433.87 Aligned_cols=398 Identities=24% Similarity=0.360 Sum_probs=322.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-------CCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-------MTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-------~~~~~v~~i~~ 164 (1190)
+|||||+|+|++ +.+++++|+++|+++++++++++..+.+..++|+.|..| ++.+.+.++++
T Consensus 2 ~~kvLi~~~gei-----------a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~ 70 (472)
T PRK07178 2 IKKILIANRGEI-----------AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAV 70 (472)
T ss_pred CcEEEEECCcHH-----------HHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHH
Confidence 579999999987 679999999999999999999998888888899988543 36779999999
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeee--cCCHHHHHH
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI--GNTLDECIS 242 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~--v~s~~e~~~ 242 (1190)
++++|+|+|+++ ...++... ...++++|++++|+++++++.++||..+|++|+++|||+|++.. +.+.+++.+
T Consensus 71 ~~~~D~I~pg~g-~lse~~~~----a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~ 145 (472)
T PRK07178 71 ETGCDALHPGYG-FLSENAEL----AEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALA 145 (472)
T ss_pred HHCCCEEEeCCC-CcccCHHH----HHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHH
Confidence 999999999875 23333322 35788899999999999999999999999999999999988753 788999999
Q ss_pred HHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh----cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE
Q 001014 243 IANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA----ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 243 ~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
+++++| ||+||||+.|+||+|+++|++.+||.++++.+.. .+...++++|+||+|.+|+++++++|.+|+++.+.
T Consensus 146 ~~~~ig-yPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~ 224 (472)
T PRK07178 146 EAERIG-YPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLF 224 (472)
T ss_pred HHHHcC-CcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEE
Confidence 999999 9999999999999999999999999998876543 23456899999998889999999999988887653
Q ss_pred eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHH
Q 001014 319 SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALAS 398 (1190)
Q Consensus 319 ~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~ 398 (1190)
... ..........+...|++.++++..+++.+.+.+++++||+. |++++||++++ +|++||+|||||+++++++++
T Consensus 225 er~--~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~-g~~~vEf~~d~-~g~~y~iEiNpRl~~~~~~te 300 (472)
T PRK07178 225 ERD--CSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYE-NAGTVEFLLDA-DGEVYFMEMNTRVQVEHTITE 300 (472)
T ss_pred ccc--cceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceeEEEEEEeC-CCCEEEEEEeCCcCCCcccee
Confidence 211 00011124566678887799999999999999999999996 99999999986 788999999999999999999
Q ss_pred HHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCC-ccccCCcCeEE-eeec---eeeecccCCCCcccCCC
Q 001014 399 KATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTP-ASFEPSIDYVV-TKIP---RFAFEKFPGSEPLLTTQ 462 (1190)
Q Consensus 399 ~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~-~~f~p~~~~v~-~k~p---~~~~~~~~~~~~~l~~~ 462 (1190)
.++|+|++++++++++|.+++..+.++. .++| ..|.|+.+.+. +..| ....+........+.+.
T Consensus 301 ~~tGvdl~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~ 380 (472)
T PRK07178 301 EITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPY 380 (472)
T ss_pred eeeCcCHHHHHHHHHCCCCCCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcc
Confidence 9999999999999999999975432222 2333 24778877653 2332 11111121223344555
Q ss_pred CCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCCc
Q 001014 463 MKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPNP 518 (1190)
Q Consensus 463 ~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~ 518 (1190)
.++ .|+||+.|.|++||++++.++++ +.+.|+.+| .+.|...|.+|..
T Consensus 381 ~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~--------~~~~~~~~~~~~~ 430 (472)
T PRK07178 381 YDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTT--------IPYYQEILRNPEF 430 (472)
T ss_pred cCCccceEEEEcCCHHHHHHHHHHHHhhcEEeCccCC--------HHHHHHHhcCHhh
Confidence 444 59999999999999999999997 788887655 5688899999873
No 17
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=4.2e-44 Score=430.04 Aligned_cols=395 Identities=22% Similarity=0.339 Sum_probs=317.0
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECC-------CCHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITP-------MTPE 157 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p-------~~~~ 157 (1190)
||+ ++|||||+|+|++ +.+++++++++|+++++++++++.......++|+.+ +.| ++.+
T Consensus 1 ~~~--~~~~vLi~~~gei-----------a~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~ 67 (467)
T PRK12833 1 MPS--RIRKVLVANRGEI-----------AVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPA 67 (467)
T ss_pred CCC--CCcEEEEECCcHH-----------HHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHH
Confidence 554 4789999999987 569999999999999999876665555677899887 432 4778
Q ss_pred HHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecC
Q 001014 158 LVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGN 235 (1190)
Q Consensus 158 ~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~ 235 (1190)
.+.+++++.++|+|+|+++ ...++... ...+++.|++++||++++++++.||..+|++|+++|||+|++. .+.
T Consensus 68 ~i~~~a~~~~~daI~pg~g-~lsE~~~~----~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~ 142 (467)
T PRK12833 68 AILAAARQCGADAIHPGYG-FLSENAAF----AEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVA 142 (467)
T ss_pred HHHHHHHHhCCCEEEECCC-ccccCHHH----HHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcC
Confidence 9999999999999999875 22333322 3457889999999999999999999999999999999999885 889
Q ss_pred CHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh----cCCCCcEEEeeecCCCeeeeEEEEEeCC
Q 001014 236 TLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA----ASLTSQVLVEKSLLGWKEYELEVMRDLA 311 (1190)
Q Consensus 236 s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vlVEe~I~G~~E~sv~v~~d~~ 311 (1190)
+.+++.++++++| ||+||||+.|+||+|+++|++.+||.+++..+.. .++...++||+||+|.+|+++++++|+.
T Consensus 143 ~~~e~~~~~~~ig-yPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~ 221 (467)
T PRK12833 143 SLDAALEVAARIG-YPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE 221 (467)
T ss_pred CHHHHHHHHHHhC-CCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC
Confidence 9999999999999 9999999999999999999999999999876543 2345689999999966999999999765
Q ss_pred CcEEEEE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeC
Q 001014 312 DNVVIIC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387 (1190)
Q Consensus 312 g~~~~~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiN 387 (1190)
+++.+. +.++. ........|+..++++..+++.+.+.++++++|+. |++++||++++++|++||||||
T Consensus 222 -~~~~~~~~~~~~~r~------~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~~~~~g~~~~iEvN 293 (467)
T PRK12833 222 -RVVHLFERECSLQRR------RQKILEEAPSPSLTPAQRDALCASAVRLARQVGYR-GAGTLEYLFDDARGEFYFIEMN 293 (467)
T ss_pred -cEEEEEEeecccccC------CccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCc-CcceEEEEEecCCCCEEEEEEE
Confidence 344432 22221 24556678876799999999999999999999996 9999999998657889999999
Q ss_pred CCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCCcc-----------ccCCCC-ccccCCcCeEE-eeec-----eeee
Q 001014 388 PRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPND-----------ITKKTP-ASFEPSIDYVV-TKIP-----RFAF 449 (1190)
Q Consensus 388 pR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~~-----------i~~~~~-~~f~p~~~~v~-~k~p-----~~~~ 449 (1190)
||+++++++++.++|+|++++++++++|.+++..+.+ +..+++ ..|.|..+.+. +..| ++..
T Consensus 294 pR~~~~~~~te~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~ 373 (467)
T PRK12833 294 TRIQVEHPVTEAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDS 373 (467)
T ss_pred CCCCcchhhhHHHhCCCHHHHHHHHHCCCCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEec
Confidence 9999999999999999999999999999998743222 223344 35778877653 2222 1111
Q ss_pred cccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 450 EKFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 450 ~~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
.... +..+....++ +|+||+.|.|++||++++.++++ +.+.|+.+| .+.|.+.|.+|.
T Consensus 374 ~~~~--G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~--------~~~~~~~~~~~~ 433 (467)
T PRK12833 374 LLYP--GYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTT--------APLHRALLADAD 433 (467)
T ss_pred ceeC--cCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeECccCC--------HHHHHHHhcChh
Confidence 1112 2244444443 89999999999999999999997 788886554 678999999997
No 18
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=6.9e-44 Score=427.54 Aligned_cols=396 Identities=20% Similarity=0.309 Sum_probs=317.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCC-------CHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPM-------TPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~-------~~~~v~~i~ 163 (1190)
+|||||+|+|++ +.+++++++++|++|+.++++++..+....++|+.++ .|. +.+.++++|
T Consensus 2 ~kkvli~g~G~~-----------~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~ 70 (447)
T PRK05586 2 FKKILIANRGEI-----------AVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISAT 70 (447)
T ss_pred cceEEEECCcHH-----------HHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHH
Confidence 579999999976 6799999999999999986665555555678998875 564 456789999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~ 241 (1190)
+++++|+|+|+++ ...++..+ ..+++..|++++|++++++.+++||..+|++++++|+|+|++ ..+.+.+++.
T Consensus 71 ~~~~~d~i~p~~~-~~~E~~~~----a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~ 145 (447)
T PRK05586 71 VLTGAQAIHPGFG-FLSENSKF----AKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEAL 145 (447)
T ss_pred HHcCCCEEEcCcc-ccccCHHH----HHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHH
Confidence 9999999999974 23333322 346788999999999999999999999999999999999997 4678999999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++++++| ||+||||+.++||+|+.++++.+||.++++.+... ...++++||+||+|++|+++.++++..|+++.+
T Consensus 146 ~~~~~ig-yPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~ 224 (447)
T PRK05586 146 EIAKEIG-YPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHL 224 (447)
T ss_pred HHHHHcC-CCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEE
Confidence 9999999 99999999999999999999999999998866542 234689999999998999999999988888876
Q ss_pred EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 318 ~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
...+. ....+.+......|++.++++..+++++.+.+++++||+. |++++||++++ +|++||+|||||++++++++
T Consensus 225 ~~~~~--~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~-g~~~vEf~~~~-~g~~~~iEvNpR~~~~~~~t 300 (447)
T PRK05586 225 GERDC--SLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYK-NAGTIEFLLDK-DGNFYFMEMNTRIQVEHPIT 300 (447)
T ss_pred eceec--ceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEcC-CCCEEEEEEECCCCCCccce
Confidence 32211 0111224566677887799999999999999999999996 99999999997 78899999999999999999
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCccc-----------cCCCC-ccccCCcCeEE-eeece-----eeecccCCCCccc
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDI-----------TKKTP-ASFEPSIDYVV-TKIPR-----FAFEKFPGSEPLL 459 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i-----------~~~~~-~~f~p~~~~v~-~k~p~-----~~~~~~~~~~~~l 459 (1190)
+.+||+|++++++++++|.+++..+.++ ..+.| ..|.|..+.+. +..|. +....+.| ...
T Consensus 301 ~~~tGid~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g--~~v 378 (447)
T PRK05586 301 EMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSG--YTI 378 (447)
T ss_pred ehhhCCCHHHHHHHHHcCCCCCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCC--Ccc
Confidence 9999999999999999999987543322 22333 34667777654 34341 12112222 233
Q ss_pred CCCCC-cEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCCc
Q 001014 460 TTQMK-SVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPNP 518 (1190)
Q Consensus 460 ~~~~~-s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~ 518 (1190)
....+ .+|+||+.|+|++||++++.++|+ ..+.|+.+| .+.|...|.||..
T Consensus 379 ~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g~~~~--------~~~~~~~~~~~~~ 431 (447)
T PRK05586 379 PPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTN--------IDFQFIILEDEEF 431 (447)
T ss_pred CCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEECccCC--------HHHHHHHhCCHhh
Confidence 33333 489999999999999999999997 677887554 6788999999963
No 19
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=1e-43 Score=427.40 Aligned_cols=397 Identities=19% Similarity=0.306 Sum_probs=319.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-------CCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-------MTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-------~~~~~v~~i~~ 164 (1190)
+|||||+|+|.+ +.+++++++++|+++++++++++..+.+..++|+.|+.+ ++.+.++++++
T Consensus 2 ~kkiLi~~~ge~-----------a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~ 70 (478)
T PRK08463 2 IHKILIANRGEI-----------AVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAK 70 (478)
T ss_pred ccEEEEECCCHH-----------HHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHH
Confidence 579999999987 569999999999999999999888777778899988544 37789999999
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee-ec--CCHHHHH
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG-IG--NTLDECI 241 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~-~v--~s~~e~~ 241 (1190)
+.++|+|+|+++. ..++... ...+++.|++++|+++++++.++||..+|++|+++|||+|++. .+ .+.+++.
T Consensus 71 ~~~iDaI~pg~g~-lsE~~~~----a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~ 145 (478)
T PRK08463 71 ACGADAIHPGYGF-LSENYEF----AKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIK 145 (478)
T ss_pred HhCCCEEEECCCc-cccCHHH----HHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHH
Confidence 9999999998752 2333322 4568889999999999999999999999999999999998853 32 5788899
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH----hcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL----AASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++++++| ||+||||+.|+||+|++++++.+||.+++.... ..+..+.++||+||+|++|+++.+++|..|+++.+
T Consensus 146 ~~~~~ig-yPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~ 224 (478)
T PRK08463 146 IFARKIG-YPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHL 224 (478)
T ss_pred HHHHHhC-CCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEE
Confidence 9999999 999999999999999999999999999987543 34556789999999987999999999988888776
Q ss_pred EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 318 ~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
+..+ ..........+...|++.++++..+++++.+.++++++|+. |++++||++++ +|++||+|||||++++++++
T Consensus 225 ~er~--~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~-g~~~vEf~~~~-~~~~y~iEiN~R~~~~~~~t 300 (478)
T PRK08463 225 CERD--CSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYT-NAGTIEFLLDD-YNRFYFMEMNTRIQVEHGVT 300 (478)
T ss_pred eccC--CccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCC-CceeEEEEEcC-CCCEEEEEEECCcCCCccee
Confidence 4211 01111124567788887799999999999999999999996 99999999996 68999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCccc-----------cCCCC-ccccCCcCeEEe-eec---eeeecccCCCCcccCC
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDI-----------TKKTP-ASFEPSIDYVVT-KIP---RFAFEKFPGSEPLLTT 461 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i-----------~~~~~-~~f~p~~~~v~~-k~p---~~~~~~~~~~~~~l~~ 461 (1190)
+.+||+|++++++++++|.+++..+..+ ..+++ ..|.|..+.+.- ..| ...++...+....+.+
T Consensus 301 e~~tGidlv~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~ 380 (478)
T PRK08463 301 EEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPP 380 (478)
T ss_pred eHhhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCc
Confidence 9999999999999999999886432212 23334 257788775432 111 0111111122334444
Q ss_pred CCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 462 QMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 462 ~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
..++ +|++|+.|.|++||++++.++|+ +.+.|+.+| .+.|...|.+|.
T Consensus 381 ~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g~~t~--------~~~~~~~~~~~~ 430 (478)
T PRK08463 381 YYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTT--------IPFLIAITKTRE 430 (478)
T ss_pred ccccceeEEEEECCCHHHHHHHHHHHHhhcEEeCccCC--------HHHHHHHhCCHH
Confidence 4444 89999999999999999999996 788887655 567888888886
No 20
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=3.1e-43 Score=422.76 Aligned_cols=399 Identities=21% Similarity=0.308 Sum_probs=317.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-C-------CCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-P-------MTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p-------~~~~~v~~i 162 (1190)
.+|||||+|+|.+ +.+++++++++|++|+++++.++..+....+||+.+.. | .+.+.++++
T Consensus 3 ~~k~ili~~~g~~-----------~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~ 71 (445)
T PRK08462 3 EIKRILIANRGEI-----------ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISA 71 (445)
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHH
Confidence 4689999999987 56999999999999999988887766667899998854 2 357889999
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHH
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDEC 240 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~ 240 (1190)
|+++++|+|+|+++ ..+++... .++++.+|++++|++++++.+++||..+|++|+++|+|+|++. .+.+.+++
T Consensus 72 ~~~~~~D~i~pg~g-~lse~~~~----a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~ 146 (445)
T PRK08462 72 AEIFEADAIFPGYG-FLSENQNF----VEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEA 146 (445)
T ss_pred HHHcCCCEEEECCC-ccccCHHH----HHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHH
Confidence 99999999999986 22333332 3578899999999999999999999999999999999999864 67889999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH----hcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL----AASLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.++++++| ||+||||+.|+||+|+.+++|.+||.+++.... ..+..+.++||+||+|++|++++++.+.+|+++.
T Consensus 147 ~~~~~~~g-~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~ 225 (445)
T PRK08462 147 KKIAKEIG-YPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIH 225 (445)
T ss_pred HHHHHHcC-CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEE
Confidence 99999999 999999999999999999999999999886543 3344567999999998789999999988888877
Q ss_pred EEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHH
Q 001014 317 ICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSAL 396 (1190)
Q Consensus 317 ~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l 396 (1190)
++..+.. ........+..+|+..++++..+++.+.+.+++++||+. |.+++||++++ +|++||+|||||+++++.+
T Consensus 226 ~g~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~-G~~~ve~~~~~-~g~~~viEiNpR~~~~~~~ 301 (445)
T PRK08462 226 VGERDCS--LQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYE-GAGTFEFLLDS-NLDFYFMEMNTRLQVEHTV 301 (445)
T ss_pred EEecccc--ceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCC-CcceEEEEEeC-CCCEEEEEEECCcCcCcce
Confidence 6422110 011113344567887799999999999999999999996 99999999997 6789999999999998888
Q ss_pred HHHHhCCCHHHHHHHHHcCCCCCCCCc----------cccCCCCccccCCcCeEEe-eec---eeeecccCCCCcccCCC
Q 001014 397 ASKATGFPIAKMAAKLSVGYSLDQIPN----------DITKKTPASFEPSIDYVVT-KIP---RFAFEKFPGSEPLLTTQ 462 (1190)
Q Consensus 397 ~~~atG~~l~~~~~~~alG~~l~~~~~----------~i~~~~~~~f~p~~~~v~~-k~p---~~~~~~~~~~~~~l~~~ 462 (1190)
++.++|+|+++.++++++|.+++.... .++..++..|.|..+.+.- ..| .+......+........
T Consensus 302 ~~~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~ 381 (445)
T PRK08462 302 SEMVSGLDLIEWMIKIAEGEELPSQESIKLKGHAIECRITAEDPKKFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPY 381 (445)
T ss_pred ehhhhCCCHHHHHHHHHCCCCcccccccCCceeEEEEEeccCCCCceecccCEEeEEEcCCCCCEEEccCcCCCCEeChh
Confidence 889999999999999999999875422 2223444557777665431 112 11111111212222222
Q ss_pred C-CcEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCCc
Q 001014 463 M-KSVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPNP 518 (1190)
Q Consensus 463 ~-~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~ 518 (1190)
. ..+|+||+.|+|++||++++.++++ ..+.|+.+| .+.|...|.||..
T Consensus 382 ~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~~~--------~~~~~~~~~~~~~ 431 (445)
T PRK08462 382 YDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTT--------IPFHLEMMENADF 431 (445)
T ss_pred hccCccEEEEEcCCHHHHHHHHHHHHHhcEEECccCC--------HHHHHHHhcChhh
Confidence 2 3589999999999999999999997 777887554 5788999999863
No 21
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=6.4e-43 Score=421.33 Aligned_cols=395 Identities=24% Similarity=0.347 Sum_probs=316.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CC-------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TP-------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p-------~~~~~v~~i~ 163 (1190)
+|||||+|+|.+ +.+++++++++|++|++++++++..+....++|+.++ .| .+.+.+.+++
T Consensus 2 ~k~iLi~g~g~~-----------a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a 70 (451)
T PRK08591 2 FDKILIANRGEI-----------ALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAA 70 (451)
T ss_pred cceEEEECCCHH-----------HHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHH
Confidence 579999999976 6799999999999999998877766666788998874 34 3678999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~ 241 (1190)
+++++|+|+|+++. ..++... ...++.+|++++|++++++.+++||..||++|+++|||+|++ ..+++.+++.
T Consensus 71 ~~~~id~I~p~~~~-~~e~~~~----~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~ 145 (451)
T PRK08591 71 EITGADAIHPGYGF-LSENADF----AEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEAL 145 (451)
T ss_pred HHhCCCEEEECCCc-cccCHHH----HHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHH
Confidence 99999999998752 2222222 457889999999999999999999999999999999999987 4788999999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++++.++ ||+||||+.++||+|+.+++|.+||.++++.+... .+...++||+||+|.+|+++.+++|++|+++.+
T Consensus 146 ~~~~~~g-~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~ 224 (451)
T PRK08591 146 AIAKEIG-YPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHL 224 (451)
T ss_pred HHHHHcC-CCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEE
Confidence 9999999 99999999999999999999999999999876532 235679999999987899999999988887765
Q ss_pred EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 318 ~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
+..+.. ............|+..++++..+++.+.+.+++++||+. |++|+||++++ +|++||+|||||++++++++
T Consensus 225 ~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~-G~~~vEf~~~~-~g~~~viEINpR~~~~~~~~ 300 (451)
T PRK08591 225 GERDCS--LQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYR-GAGTIEFLYEK-NGEFYFIEMNTRIQVEHPVT 300 (451)
T ss_pred eccccc--ceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceEEEEEEEcC-CCCEEEEEEECCCCccchhh
Confidence 322110 001113344566776799999999999999999999996 99999999997 78899999999999999999
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCcccc--C---------CCC-ccccCCcCeEEe-eec-----eeeecccCCCCccc
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDIT--K---------KTP-ASFEPSIDYVVT-KIP-----RFAFEKFPGSEPLL 459 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i~--~---------~~~-~~f~p~~~~v~~-k~p-----~~~~~~~~~~~~~l 459 (1190)
+.++|+|++++++++++|.+++....+.. + +++ ..|.|..+.+.. ..| ++.+...+| ..+
T Consensus 301 ~~~~Gvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g--~~v 378 (451)
T PRK08591 301 EMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTG--YTI 378 (451)
T ss_pred hhhhCCCHHHHHHHHHCCCCCCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCC--CCc
Confidence 99999999999999999999875433221 1 122 346677765542 222 122222222 233
Q ss_pred CCCCC-cEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 460 TTQMK-SVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 460 ~~~~~-s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
....+ .+|+|++.|+|++||++++.++++ +.+.|+.+| .+.|...|.+|.
T Consensus 379 ~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g~~tn--------~~~~~~~~~~~~ 430 (451)
T PRK08591 379 PPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTT--------IPLHLRLLNDPN 430 (451)
T ss_pred CccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEECCCCC--------HHHHHHHhcCHh
Confidence 33333 489999999999999999999997 788887655 568889999986
No 22
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=388.01 Aligned_cols=386 Identities=24% Similarity=0.372 Sum_probs=332.2
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCC-------CHHHHHHHHHHc
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPM-------TPELVEQVLEKE 166 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~-------~~~~v~~i~~~~ 166 (1190)
|||.+.|.++ ..+++.++++|++++.+.++++..+.+..+||+.| +.|. +.+.+++.+++.
T Consensus 1 iLiANRGEIA-----------cRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238|consen 1 ILIANRGEIA-----------CRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred Ceecccccee-----------ehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhc
Confidence 6889999885 47999999999999999999999999999999887 6663 557899999999
Q ss_pred CCCEEEecCCChhHHHHHHHHHHh----hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecCCHHHH
Q 001014 167 RPDALLPTMGGQTALNLAVALAES----GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGNTLDEC 240 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~----~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~ 240 (1190)
+..+|+|++| +|+|+ +.|+..|+.|+||++.+++-+.||...|++|+++|+|+.+. ....|.+++
T Consensus 70 gaqaihPGYG---------FLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~ 140 (670)
T KOG0238|consen 70 GAQAIHPGYG---------FLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEA 140 (670)
T ss_pred CCceecCCcc---------ccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHH
Confidence 9999999998 55554 58899999999999999999999999999999999998665 456788999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH----hcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL----AASLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.+.++++| ||++||+..|+||+|++++.+++|+++.++.+. ..++++.+++|+||+.+++++++++.|+.|+.+.
T Consensus 141 ~~~a~eIg-yPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~ 219 (670)
T KOG0238|consen 141 KKVAREIG-YPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVH 219 (670)
T ss_pred HHHHHhcC-CcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEE
Confidence 99999999 999999999999999999999999999887665 3457889999999999999999999999999998
Q ss_pred E----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCC
Q 001014 317 I----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSR 392 (1190)
Q Consensus 317 ~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~g 392 (1190)
+ |++|+++ +..+..+|++.|+.+.+..|.+.|.++++++||. |...|||++|+ .+.+||+|+|.|++-
T Consensus 220 l~ERdCSvQRRn------QKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~-~aGTVEFi~D~-~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 220 LGERDCSVQRRN------QKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYV-GAGTVEFIVDS-KDNFYFMEMNTRLQV 291 (670)
T ss_pred ecccccchhhhh------hhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCc-ccceEEEEEcC-CCcEEEEEeeceeee
Confidence 8 8889886 7888999999999999999999999999999995 99999999998 889999999999999
Q ss_pred chHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCC-ccccCCcCeEE-eeece----eeecccCCC
Q 001014 393 SSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTP-ASFEPSIDYVV-TKIPR----FAFEKFPGS 455 (1190)
Q Consensus 393 s~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~-~~f~p~~~~v~-~k~p~----~~~~~~~~~ 455 (1190)
.++++++.||.||.++++|++.|.+|+--+..++ .++| ..|.|+.+.++ ++.|. ...+.....
T Consensus 292 EHPvTEmItg~DLVewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~ 371 (670)
T KOG0238|consen 292 EHPVTEMITGTDLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRS 371 (670)
T ss_pred cccchhhccchHHHHHHHHHhcCCCCCCCcceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeeecCccc
Confidence 9999999999999999999999999987655444 4555 46899988655 23331 111111111
Q ss_pred CcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 456 EPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 456 ~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+..+..+++. ++.++.+|.|+++|+.|+.++|+ +.+.|+.+| .+.|...+.||.
T Consensus 372 g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~Gv~tn--------I~~l~~i~~~~~ 427 (670)
T KOG0238|consen 372 GDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRGVPTN--------IDFLRDIISHPE 427 (670)
T ss_pred CCcccccccchheeeeEecCCHHHHHHHHHHHHhhcEEecCccc--------hHHHHHHhcChh
Confidence 2333444454 89999999999999999999997 788888665 457777777775
No 23
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=4.5e-43 Score=402.62 Aligned_cols=390 Identities=26% Similarity=0.420 Sum_probs=338.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-----CC----CCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-----TP----MTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-----~p----~~~~~v~~ 161 (1190)
.++||||.+.|.++| .+.+++.++|++++.+.+..+..+.+...||+.|. .| ++.|.+.+
T Consensus 6 ~~~KvLVANRgEIAI-----------RvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~ 74 (1149)
T COG1038 6 KIKKVLVANRGEIAI-----------RVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIR 74 (1149)
T ss_pred hhheeeeeccchhhH-----------HHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHH
Confidence 468999999999965 89999999999999999999999999999999984 23 37889999
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHh----hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecC
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAES----GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGN 235 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~----~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~ 235 (1190)
++++.+.|+|+|++| +|+|+ ..|.+.||.|+||.++.+.++.||...|..+.++|+|+.|. -.++
T Consensus 75 iAk~~gaDaIhPGYG---------fLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~ 145 (1149)
T COG1038 75 IAKRSGADAIHPGYG---------FLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIE 145 (1149)
T ss_pred HHHHcCCCeecCCcc---------cccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcc
Confidence 999999999999998 55553 46888999999999999999999999999999999998664 4567
Q ss_pred CHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH----hcCCCCcEEEeeecCCCeeeeEEEEEeCC
Q 001014 236 TLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL----AASLTSQVLVEKSLLGWKEYELEVMRDLA 311 (1190)
Q Consensus 236 s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vlVEe~I~G~~E~sv~v~~d~~ 311 (1190)
+.+++++++++.| ||++||.+.|+||+|++++.++++|.+++.++. ..+++++++||+||+.+++++|+++.|..
T Consensus 146 ~~ee~~~fa~~~g-yPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~ 224 (1149)
T COG1038 146 TIEEALEFAEEYG-YPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTH 224 (1149)
T ss_pred cHHHHHHHHHhcC-CcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCC
Confidence 7999999999999 999999999999999999999999999998765 45778999999999999999999999999
Q ss_pred CcEEEE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeC
Q 001014 312 DNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387 (1190)
Q Consensus 312 g~~~~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiN 387 (1190)
||++++ |++|+.+ ++.+..+|++.|+++.+++|.+.+.++++.+||. |...+||.++. +|++||||||
T Consensus 225 GnvvHLfERDCSvQRRh------QKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~-~AGTvEFLvd~-~~~fyFIEvN 296 (1149)
T COG1038 225 GNVVHLFERDCSVQRRH------QKVVEVAPAPYLSPELRDEICDDAVKLARNIGYI-NAGTVEFLVDE-DGKFYFIEVN 296 (1149)
T ss_pred CCEEEEeecccchhhcc------ceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-ccceEEEEEcC-CCcEEEEEec
Confidence 999988 8999886 8999999999999999999999999999999996 99999999997 7799999999
Q ss_pred CCCCCchHHHHHHhCCCHHHHHHHHHcCCCCC--CC---------------CccccCCCC-ccccCCcCeEEeeec--ee
Q 001014 388 PRVSRSSALASKATGFPIAKMAAKLSVGYSLD--QI---------------PNDITKKTP-ASFEPSIDYVVTKIP--RF 447 (1190)
Q Consensus 388 pR~~gs~~l~~~atG~~l~~~~~~~alG~~l~--~~---------------~~~i~~~~~-~~f~p~~~~v~~k~p--~~ 447 (1190)
||++-.+.+++..||+|+++.++.++.|..|. ++ +-+|+.++| ..|.|..+.+..-.. .|
T Consensus 297 PRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGf 376 (1149)
T COG1038 297 PRIQVEHTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGF 376 (1149)
T ss_pred CceeeEEeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCc
Confidence 99999999999999999999999999999887 22 334556777 469999996654211 11
Q ss_pred --eec-ccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 448 --AFE-KFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 448 --~~~-~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
..+ .-......+++.++| +-.+.++|.++++|.+||.|+|. +.+.|+.+| ..+|+..|.||+
T Consensus 377 GVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIrGVkTN--------i~FL~~vl~h~~ 443 (1149)
T COG1038 377 GVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIRGVKTN--------IPFLEAVLNHPD 443 (1149)
T ss_pred eEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHheecceecC--------cHHHHHHhcCcc
Confidence 111 000113345567777 67889999999999999999995 899998766 458899999997
No 24
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=3e-42 Score=398.02 Aligned_cols=393 Identities=27% Similarity=0.397 Sum_probs=333.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECC-------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITP-------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p-------~~~~~v~~i~ 163 (1190)
++||||.+.|.+ +..++++++++|++++.+++.++....+..++|+.+ +.| ++.+.+...+
T Consensus 2 ~~kiLIanrGei-----------a~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a 70 (449)
T COG0439 2 FKKILIANRGEI-----------AVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAA 70 (449)
T ss_pred CceEEEecCchh-----------HHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHH
Confidence 579999999976 568999999999999999999988888889999887 554 3567888888
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeee--cCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI--GNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~--v~s~~e~~ 241 (1190)
+..+.|+|+|+++ ...+|... ..++++.|+.++||++++++.+.||..+|++|+++|+|+||+.. +.+.+++.
T Consensus 71 ~~~gadai~pGyg-flsen~~f----ae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~ 145 (449)
T COG0439 71 EETGADAIHPGYG-FLSENAAF----AEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEAL 145 (449)
T ss_pred HhcCCceEcccch-hhhCCHHH----HHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHH
Confidence 9999999999998 44444444 46889999999999999999999999999999999999999762 56778999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
+.++++| |||||||+.|+||+|+++|++.+||.+++..+.+. +.++.+++|+||++.++++++++.|+.|+++.+
T Consensus 146 ~~a~~iG-yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l 224 (449)
T COG0439 146 AIAEEIG-YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHL 224 (449)
T ss_pred HHHHHcC-CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEE
Confidence 9999999 99999999999999999999999999999887754 346679999999998899999999999999988
Q ss_pred ----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 318 ----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 318 ----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
|++++.+ ++.+..+|++.++++.++++-+.+.++++.+||+ |..++||+++. ++++||+|+|||+++.
T Consensus 225 ~eRdcsiqrr~------qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~-gagtvEfl~~~-~~~~yfiEmN~Rlqve 296 (449)
T COG0439 225 GERDCSIQRRH------QKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYR-GAGTVEFLYDS-NGEFYFIEMNTRLQVE 296 (449)
T ss_pred EeccCCCcCCc------cceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeC-CCCEEEEEEecccccC
Confidence 5555543 8889999999899999999999999999999996 99999999996 6899999999999999
Q ss_pred hHHHHHHhCCCHHHHHHHHHcCCCCCCCCcc-----------ccCCCCcc-ccCCcCeEEe-eec---eeeecccCCCCc
Q 001014 394 SALASKATGFPIAKMAAKLSVGYSLDQIPND-----------ITKKTPAS-FEPSIDYVVT-KIP---RFAFEKFPGSEP 457 (1190)
Q Consensus 394 ~~l~~~atG~~l~~~~~~~alG~~l~~~~~~-----------i~~~~~~~-f~p~~~~v~~-k~p---~~~~~~~~~~~~ 457 (1190)
+++++++||+|+...++++++|.+++-.+.+ +..++|.. |.|+.+.+.- ..| ...++...+.+.
T Consensus 297 h~vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~ 376 (449)
T COG0439 297 HPVTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGY 376 (449)
T ss_pred ccceehhhhhhHHHHHHHHHcCCCCCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCc
Confidence 9999999999999999999999877655422 33566655 8999987663 233 112223333355
Q ss_pred ccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 458 LLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 458 ~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+++...++ +|++++.|+++++|+.++.++|+ +.+.|+.++ .+.+...|.+|.
T Consensus 377 ~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G~~t~--------~~~~~~~~~~~~ 430 (449)
T COG0439 377 RVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIKTN--------IPLLQEILRDPD 430 (449)
T ss_pred ccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecCccCC--------hHHHHHHhcChH
Confidence 66777776 99999999999999999999996 787886443 566777777765
No 25
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=2.4e-41 Score=435.57 Aligned_cols=394 Identities=23% Similarity=0.387 Sum_probs=325.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC---------CCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP---------MTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p---------~~~~~v~~ 161 (1190)
+++||||+|+|++ +.+++++++++|+++++++++++..+.+...+|+.|..| .+.+.+++
T Consensus 4 ~~kkvLianrGei-----------avri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~ 72 (1146)
T PRK12999 4 KIKKVLVANRGEI-----------AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIR 72 (1146)
T ss_pred cccEEEEECCcHH-----------HHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHH
Confidence 3679999999987 568999999999999999988887777788899988543 36789999
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHH
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDE 239 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e 239 (1190)
+++++++|+|+|+++. ..++... ...+++.|++++||++++++.++||..+|++++++|||+|++. .+.+.++
T Consensus 73 iAk~~~iDaI~PgyGf-lsE~~~~----a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~ee 147 (1146)
T PRK12999 73 VAKQAGVDAIHPGYGF-LSENPEF----ARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEE 147 (1146)
T ss_pred HHHHhCCCEEEeCCCc-cccCHHH----HHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHH
Confidence 9999999999998752 2233222 3467889999999999999999999999999999999998765 5899999
Q ss_pred HHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 240 CISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 240 ~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
+.++++++| ||+||||+.|+||+|+++|++.+||.++++.+... .+.+.++||+||+|.+|+++++++|.+|+++
T Consensus 148 a~~~a~~iG-yPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv 226 (1146)
T PRK12999 148 ALEFAEEIG-YPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVV 226 (1146)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEE
Confidence 999999999 99999999999999999999999999999876542 3356899999999988999999999989888
Q ss_pred EE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCC
Q 001014 316 II----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 316 ~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~ 391 (1190)
.+ |+.++.+ ...+..+|+..++++..+++.+.+.++++++|+. |++++||++++ +|++||||||||++
T Consensus 227 ~l~erdcsvqrr~------qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~-G~gtVEflvd~-dg~~yfIEINpRlq 298 (1146)
T PRK12999 227 HLYERDCSVQRRH------QKVVEIAPAPGLSEELRERICEAAVKLARAVGYV-NAGTVEFLVDA-DGNFYFIEVNPRIQ 298 (1146)
T ss_pred EEEccccceeecC------ccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceEEEEEEEEC-CCCEEEEEEECCCC
Confidence 76 3343322 4566778887799999999999999999999996 99999999997 67899999999999
Q ss_pred CchHHHHHHhCCCHHHHHHHHHcCCCCCCCCc-----------------cccCCCCc-cccCCcCeEEe-eece---eee
Q 001014 392 RSSALASKATGFPIAKMAAKLSVGYSLDQIPN-----------------DITKKTPA-SFEPSIDYVVT-KIPR---FAF 449 (1190)
Q Consensus 392 gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~-----------------~i~~~~~~-~f~p~~~~v~~-k~p~---~~~ 449 (1190)
+++.+++.+||+|+++.++++++|.+++.+.. +++.++|. .|.|..+.+.. +.|. ..+
T Consensus 299 veh~vte~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~ 378 (1146)
T PRK12999 299 VEHTVTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRL 378 (1146)
T ss_pred CcchHHHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEe
Confidence 99889999999999999999999999876321 23344553 68899886652 3331 111
Q ss_pred cccCC-CCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 450 EKFPG-SEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 450 ~~~~~-~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+...+ ....+.+..+| +++||+.|+|+++|++|+.++|+ +.+.|+.+| .+.|...|.||.
T Consensus 379 d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~i~gv~tn--------~~~l~~~~~~~~ 441 (1146)
T PRK12999 379 DGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFRIRGVKTN--------IPFLENVLKHPD 441 (1146)
T ss_pred eccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcEEecccCc--------HHHHHHHhCCHh
Confidence 11111 24466667777 78999999999999999999996 788887655 568899999986
No 26
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=1.9e-41 Score=433.73 Aligned_cols=392 Identities=22% Similarity=0.338 Sum_probs=327.0
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-----------CCHHHHHHH
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-----------MTPELVEQV 162 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-----------~~~~~v~~i 162 (1190)
||||.+.|.++ ..++++++++|+++++++++++..+.+...+|+.|+.| +|.+.+.++
T Consensus 1 ~~lianrgeia-----------~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~i 69 (1143)
T TIGR01235 1 KILVANRGEIA-----------IRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRV 69 (1143)
T ss_pred CEEEECCCHHH-----------HHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHH
Confidence 69999999884 58999999999999999999998888889999998542 357899999
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHH
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDEC 240 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~ 240 (1190)
++++++|+|+|++|. ..++... ...++..|++++||++++++++.||..++++++++|+|+|++. .+.+.+++
T Consensus 70 ak~~~iDaI~PGyGf-lsE~~~~----a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea 144 (1143)
T TIGR01235 70 AKLNGVDAIHPGYGF-LSENSEF----ADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEV 144 (1143)
T ss_pred HHHhCCCEEEECCCc-cccCHHH----HHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHH
Confidence 999999999999762 2333322 3468889999999999999999999999999999999999975 57889999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.++++++| ||+||||+.|+||+|+++|++.+||.+++..+... .+...++||+||+|++|+++++++|.+|+++.
T Consensus 145 ~~~ae~iG-yPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~ 223 (1143)
T TIGR01235 145 LDFAAAIG-YPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVH 223 (1143)
T ss_pred HHHHHHcC-CCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEE
Confidence 99999999 99999999999999999999999999998876532 34568999999998899999999999998876
Q ss_pred EE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCC
Q 001014 317 IC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSR 392 (1190)
Q Consensus 317 ~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~g 392 (1190)
+. +.++. ....+..+|+..++++..++|++.+.++++++|+. |+++|||++++ +|++||||||||+++
T Consensus 224 l~eRdcsvqrr------~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~-G~gtVEFlvd~-dg~~yfIEVNPRiqv 295 (1143)
T TIGR01235 224 LFERDCSVQRR------HQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYI-NAGTVEFLVDN-DGKFYFIEVNPRIQV 295 (1143)
T ss_pred EEecccccccc------CceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEeC-CCcEEEEEeecCCCc
Confidence 53 33332 24566778987799999999999999999999996 99999999997 678999999999999
Q ss_pred chHHHHHHhCCCHHHHHHHHHcCCCCCC--C---------------CccccCCCC-ccccCCcCeEEe-eece---eeec
Q 001014 393 SSALASKATGFPIAKMAAKLSVGYSLDQ--I---------------PNDITKKTP-ASFEPSIDYVVT-KIPR---FAFE 450 (1190)
Q Consensus 393 s~~l~~~atG~~l~~~~~~~alG~~l~~--~---------------~~~i~~~~~-~~f~p~~~~v~~-k~p~---~~~~ 450 (1190)
++.+++.+||+|+.+.+++++.|.+++. + +-+++.++| ..|.|+.+.+.. +.|. ..++
T Consensus 296 eh~vTe~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d 375 (1143)
T TIGR01235 296 EHTVTEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLD 375 (1143)
T ss_pred chhHHHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEec
Confidence 9999999999999999999999999982 1 123446777 469999996642 3221 1111
Q ss_pred cc-CCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCCc
Q 001014 451 KF-PGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPNP 518 (1190)
Q Consensus 451 ~~-~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~ 518 (1190)
.. ...+..+++.++| ++++++.|+|+++|+.|+.|+|+ +.+.|+.+| .+.|...|.||..
T Consensus 376 ~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~gv~tn--------~~~l~~~l~~~~f 438 (1143)
T TIGR01235 376 GGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRGVKTN--------IPFLENVLGHPKF 438 (1143)
T ss_pred ccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEECccCC--------HHHHHHHhcCHhh
Confidence 11 0123456677777 79999999999999999999996 788887655 5789999999973
No 27
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.8e-40 Score=400.39 Aligned_cols=399 Identities=20% Similarity=0.304 Sum_probs=307.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-------C-CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-------P-MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-------p-~~~~~v~~i~ 163 (1190)
+|||||||+|++ +.+++++++++|+++++++++++.++....++|+.|+. . .+.+.+.+++
T Consensus 2 ~~~ililg~g~~-----------~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~ 70 (450)
T PRK06111 2 FQKVLIANRGEI-----------AVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIA 70 (450)
T ss_pred cceEEEECCcHH-----------HHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 579999999976 67999999999999999998887777666779988863 1 3678999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~ 241 (1190)
+++++|+|+|+.+. ..++... ...++..|++++|++++++++++||..++++|+++|||+|++ ..+.+.+++.
T Consensus 71 ~~~~id~I~p~~~~-~~e~~~~----~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~ 145 (450)
T PRK06111 71 KKTGAEAIHPGYGL-LSENASF----AERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAI 145 (450)
T ss_pred HHhCCCEEEeCCCc-cccCHHH----HHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHH
Confidence 99999999997642 2222222 346788999999999999999999999999999999999986 5668899999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh----cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA----ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++++.++ ||+||||+.++||+|+.++++.+||.++++.... .+...+++||+||+|++|+++.++.+.+|+++.+
T Consensus 146 ~~~~~~~-~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~ 224 (450)
T PRK06111 146 AIARQIG-YPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYL 224 (450)
T ss_pred HHHHHhC-CCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEE
Confidence 9999999 9999999999999999999999999999987532 2345689999999998899999999888887766
Q ss_pred EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 318 CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 318 ~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
...+... ..+........|++.++++..+++++.+.+++++||+. |++|+||++++ +|++||+|||||++++.+++
T Consensus 225 ~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~-g~~~ve~~~~~-~g~~~viEiN~R~~~~~~~~ 300 (450)
T PRK06111 225 WERECSV--QRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYT-NAGTIEFLVDE-QKNFYFLEMNTRLQVEHPVT 300 (450)
T ss_pred Eeecccc--cccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCC-CceeEEEEEcC-CCCEEEEEEECCcCCcchhh
Confidence 5332110 00112234446776688999999999999999999996 99999999996 66799999999999998999
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCCccccCCcCeEE-eeece-ee--ecccCCCCcccCC-
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTPASFEPSIDYVV-TKIPR-FA--FEKFPGSEPLLTT- 461 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~~~f~p~~~~v~-~k~p~-~~--~~~~~~~~~~l~~- 461 (1190)
..++|+|++++++++++|.+++....... +..+..+.|..+.+. +..|. |. ...+...+.++..
T Consensus 301 ~~~~Gvd~~~~~i~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~ 380 (450)
T PRK06111 301 EEITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPF 380 (450)
T ss_pred HHHhCcCHHHHHHHHhcCCCCCCccccCCcCceEEEEEEecCCCCCcccCCCeeCeEecCCCCCEEEEecccCCCEeChh
Confidence 99999999999999999998874322111 111223345544321 11110 00 0001111111111
Q ss_pred CCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCCch
Q 001014 462 QMKSVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPNPD 519 (1190)
Q Consensus 462 ~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~~ 519 (1190)
.-.++|+|++.|.|.+||.+++.++++ ..+.|+.+| .+.|++.|.+|...
T Consensus 381 ~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g~~~~--------~~~~~~~~~~~~~~ 431 (450)
T PRK06111 381 YDPMIAKLIAHGETREEAISRLHDALEELKVEGIKTN--------IPLLLQVLEDPVFK 431 (450)
T ss_pred hcccceEEEEEeCCHHHHHHHHHHHHHhCEEeCccCC--------HHHHHHHhcChhhc
Confidence 112479999999999999999999997 677886554 56789999998643
No 28
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=3.3e-41 Score=394.47 Aligned_cols=354 Identities=18% Similarity=0.269 Sum_probs=286.5
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCCCc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~d~ 721 (1190)
.++|+|||+|++ +.+.+.+++++|+++++++++|+.+... ++|+.+..+ .+.+.+.++++ .+|.
T Consensus 2 ~~~igilG~Gql-----------~~ml~~aa~~lG~~v~~~d~~~~~pa~~--~ad~~~~~~~~D~~~l~~~a~--~~dv 66 (372)
T PRK06019 2 MKTIGIIGGGQL-----------GRMLALAAAPLGYKVIVLDPDPDSPAAQ--VADEVIVADYDDVAALRELAE--QCDV 66 (372)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCCchhH--hCceEEecCCCCHHHHHHHHh--cCCE
Confidence 478999999984 4555999999999999999998876644 678777644 56888888886 5676
Q ss_pred cccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHH
Q 001014 722 IIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAI 801 (1190)
Q Consensus 722 Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~ 801 (1190)
|...++.. +......++ +.+ .++|+++++.+++||..+|++|+++|||+|+|..+.+.+++.++
T Consensus 67 it~e~e~i-~~~~l~~l~----------~~~-----~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~ 130 (372)
T PRK06019 67 ITYEFENV-PAEALDALA----------ARV-----PVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAA 130 (372)
T ss_pred EEeCcCCC-CHHHHHHHh----------cCC-----eeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHH
Confidence 65444432 333444444 334 35699999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEecCcC-CCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 802 AKEIGYPVVVRPSYV-LGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 802 ~~~igyPvvvKP~~~-~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
++++|||+|+||+.+ .+|+|+.++++.+|++.+++.+ ...+++||+||++++|++|.++++.+|++..+++.++.
T Consensus 131 ~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e~~ 206 (372)
T PRK06019 131 LADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL----GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENV 206 (372)
T ss_pred HHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc----CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcccE
Confidence 999999999999986 5899999999999999998874 34689999999778999999999888999999998887
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCH
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPL 960 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l 960 (1190)
...|+.. ....|+ .++++..+++++++.+++++||++|++++||+++.+|++||+|+|||++++.+++..++++|+
T Consensus 207 ~~~gi~~---~~~~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sq 282 (372)
T PRK06019 207 HRNGILR---TSIAPA-RISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQ 282 (372)
T ss_pred EeCCEEE---EEECCC-CCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccH
Confidence 6655432 123455 689999999999999999999999999999999768889999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCccccC-CeeEEe-e-ccC-CCcccCCCceee-CC----cccccceeeeeeCCHHHHHHHHH
Q 001014 961 AKYAALVMSGKSLNDLGFTKEVIP-KHVSVK-E-AVL-PFEKFQGCDVLL-GP----EMRSTGEVMGIDMSFPIAFAKAQ 1031 (1190)
Q Consensus 961 ~~~~~~~~lG~~l~~~~~~~~~~~-~~~~vk-~-~~~-~~~~~~~~~~~l-g~----~~rs~G~v~~~g~~~~eA~~ka~ 1031 (1190)
+++++|+++|.|++...+.....+ +...-. . ..+ .....|+++.|+ || +.|+||||+..|+|.+++..++.
T Consensus 283 f~~~ira~~Glpl~~~~~~~~~~m~nilg~~~~~~~~~~~~~~~~~~~~~ygk~~~~~~rk~Ghv~~~~~~~~~~~~~~~ 362 (372)
T PRK06019 283 FEQHLRAILGLPLGTTRLLSPAVMVNLLGDDWLEPRWDALLALPGAHLHLYGKAEARPGRKMGHVTVLGDDVEALLAKLE 362 (372)
T ss_pred HHHHHHHHcCCCCCCccccCceEEEEEECchhhhhHHHHHhhCCCCEEEECCCCCCCCCCceEEEEeecCCHHHHHHHHH
Confidence 999999999999985433221111 111100 0 111 122358888888 87 57899999999999999999998
Q ss_pred HHcC
Q 001014 1032 IAAG 1035 (1190)
Q Consensus 1032 ~~~~ 1035 (1190)
.++.
T Consensus 363 ~~~~ 366 (372)
T PRK06019 363 ALAP 366 (372)
T ss_pred HHHh
Confidence 8765
No 29
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=3.8e-41 Score=378.59 Aligned_cols=389 Identities=21% Similarity=0.347 Sum_probs=318.5
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceee--------cCCcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYF--------EPLTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~--------~p~~~e~v~~i~ 714 (1190)
.+||||-..|.+ ++.++++++++|+.++.+.++++..+.+..++|+.+. ..++.+.+++.+
T Consensus 2 f~KiLIANRGEI-----------AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa 70 (645)
T COG4770 2 FSKILIANRGEI-----------ACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAA 70 (645)
T ss_pred cceEEEeccchh-----------hHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHH
Confidence 369999999996 9999999999999999999999999999999998875 236699999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--ee
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG--GI 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~--~~ 791 (1190)
++...++|+|.+|+. ++..+++.++ +.| +.++||++++|+.+.||...|.++.+.|+|+.|+ ..
T Consensus 71 ~~tGA~AIHPGYGFLSENa~FA~a~~----------~aG---lvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~ 137 (645)
T COG4770 71 RRTGAQAIHPGYGFLSENADFAQAVE----------DAG---LVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGP 137 (645)
T ss_pred HHhCcccccCCccccccCHHHHHHHH----------HCC---cEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCc
Confidence 999999999999988 7779999999 999 9999999999999999999999999999999665 47
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHH----hHhhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLEN----AVEVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~----~~~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++..+++++||||+||++.|+||+||+++++.+|+.+.++. +...+++..++||+|++..++++++++.|+
T Consensus 138 ~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~ 217 (645)
T COG4770 138 IQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQ 217 (645)
T ss_pred ccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecC
Confidence 7899999999999999999999999999999999999999988875 466788999999999999999999999999
Q ss_pred CCcEEEEeeeeeeeccccccccccccc-----------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCE
Q 001014 868 CGNVVIGGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDV 936 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~~g~~~gd~~~~~-----------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~ 936 (1190)
+||++ |.|+..|++ |++.++++..++|-+.+.+++++.||.|...|||++|.++.+
T Consensus 218 HGNvv-------------~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f 284 (645)
T COG4770 218 HGNVV-------------HLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNF 284 (645)
T ss_pred CCCEE-------------EeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcE
Confidence 99996 556677776 999999999999999999999999999999999999989999
Q ss_pred EEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCccccccee
Q 001014 937 YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEV 1016 (1190)
Q Consensus 937 ~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v 1016 (1190)
||+|+|+|++-.+|.++..||+||+++++|++.|++|+-.. .+...+.++++..++..+...+. +.++|.+
T Consensus 285 ~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~~Q--~di~l~GhAiE~RiyAEDp~r~F-------LPs~G~l 355 (645)
T COG4770 285 YFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPFTQ--DDIPLNGHAIEARIYAEDPARGF-------LPSTGRL 355 (645)
T ss_pred EEEEeecceeccccchhhhhhhHHHHHHHHHhcCCcCCccc--ccccccceeEEEEEeccCcccCc-------cCCCcee
Confidence 99999999999999999999999999999999999998321 24556788999888733332221 1222222
Q ss_pred eeeeC------CHHHHHHHHHHHcCCCCCCCCcee--eecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHH
Q 001014 1017 MGIDM------SFPIAFAKAQIAAGQKLPLSGTVF--LSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLEL 1082 (1190)
Q Consensus 1017 ~~~g~------~~~eA~~ka~~~~~~~~p~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~ 1082 (1190)
+-... ..+.-+.... -.-|.+..++ +-++..|.+..+.+++++.+ .|.|.+...+..||+.
T Consensus 356 ~~~~~P~~~~vRvDsGV~~G~----~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~-~~~v~Gi~tn~~Fl~a 424 (645)
T COG4770 356 TRYRPPAGPGVRVDSGVREGD----EISPFYDPMIAKLIVHGADREEALDRLRRALA-EFEVEGIATNIPFLRA 424 (645)
T ss_pred EeecCCCCCceecccCcccCC----ccccccchHHHHHhhcCCCHHHHHHHHHHHHH-hhEecCccccHHHHHH
Confidence 21100 0000000000 0001111111 11455677777777766666 5888888888888863
No 30
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.4e-41 Score=367.38 Aligned_cols=352 Identities=17% Similarity=0.241 Sum_probs=289.5
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCC-cHHHHHHHhhhcCCCc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPL-TVEDVLNVIDLERPEG 721 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~-~~e~v~~i~~~~~~d~ 721 (1190)
.++|.|||||| +|+|+ +.+++++|+++++++++++.++.. ++|+...... +.+++.+++++.+ .
T Consensus 1 ~~tvgIlGGGQ--LgrMm---------~~aa~~lG~~v~vLdp~~~~PA~~--va~~~i~~~~dD~~al~ela~~~D--V 65 (375)
T COG0026 1 MKTVGILGGGQ--LGRMM---------ALAAARLGIKVIVLDPDADAPAAQ--VADRVIVAAYDDPEALRELAAKCD--V 65 (375)
T ss_pred CCeEEEEcCcH--HHHHH---------HHHHHhcCCEEEEecCCCCCchhh--cccceeecCCCCHHHHHHHHhhCC--E
Confidence 36899999999 56655 999999999999999999988765 6777766544 4889999986654 4
Q ss_pred cccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 722 IIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 722 Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
++++.+ .+......+. ... + +-|+++++.+.+||...|++|+++|+|+|+|..+.+.+++..
T Consensus 66 --iT~EfE~V~~~aL~~l~----------~~~----~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~ 128 (375)
T COG0026 66 --ITYEFENVPAEALEKLA----------ASV----K-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDA 128 (375)
T ss_pred --EEEeeccCCHHHHHHHH----------hhc----C-cCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHH
Confidence 446666 4445555555 333 3 348999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee
Q 001014 801 IAKEIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH 879 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~ 879 (1190)
+++++|+|+|+|.+.++ +|+|.+++.+.+++......... ...+ ++|+|++..+|++|.+.++.+|++.++++.|+
T Consensus 129 ~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~--~~~~-vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~eN 205 (375)
T COG0026 129 AAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE--GGVP-VLEEFVPFEREISVIVARSNDGEVAFYPVAEN 205 (375)
T ss_pred HHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc--cCce-eEEeecccceEEEEEEEEcCCCCEEEecccce
Confidence 99999999999998876 99999999999998875554221 2233 99999999999999999999999999999999
Q ss_pred eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCC
Q 001014 880 IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHP 959 (1190)
Q Consensus 880 ~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~ 959 (1190)
+++.|+. .....|+ .++++.++++++++.++++.|+|+|++.||||+..||+++++|+.||+|+|.|++..+|.++
T Consensus 206 ~h~~gIl---~~siaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~S 281 (375)
T COG0026 206 VHRNGIL---RTSIAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETS 281 (375)
T ss_pred eeecCEE---EEEEecC-cCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhcccc
Confidence 9988776 4455576 79999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCcccc-CCeeEEee---ccCCCcccCCCceee-CC----cccccceeeeeeCCHHHHHHHH
Q 001014 960 LAKYAALVMSGKSLNDLGFTKEVI-PKHVSVKE---AVLPFEKFQGCDVLL-GP----EMRSTGEVMGIDMSFPIAFAKA 1030 (1190)
Q Consensus 960 l~~~~~~~~lG~~l~~~~~~~~~~-~~~~~vk~---~~~~~~~~~~~~~~l-g~----~~rs~G~v~~~g~~~~eA~~ka 1030 (1190)
+++.++|+++|.||++..+..... .+..+... .+..+.+.|++..|+ || +.|+||||+.++.|.+++.+++
T Consensus 282 QFEqHlRAv~glPLg~~~~~~p~vMvNlLG~~~~~~~~~~~l~~p~~~lH~YGK~e~R~gRKmGHvn~~~~~~~~~~~~~ 361 (375)
T COG0026 282 QFEQHLRAVLGLPLGSTTLLSPSVMVNLLGDDVPPDDVKAVLALPGAHLHWYGKAEARPGRKMGHVNVLGSDSDELEQLA 361 (375)
T ss_pred HHHHHHHHHhCCCCCCccccCceEEEEecCCCCchhhhHHHHhCCCCEEEEecCccCCCCCeeeeEEeecCCHHHHHHHH
Confidence 999999999999999855333211 11111111 123455678998898 88 4789999999999988887765
Q ss_pred HHH
Q 001014 1031 QIA 1033 (1190)
Q Consensus 1031 ~~~ 1033 (1190)
...
T Consensus 362 ~~l 364 (375)
T COG0026 362 ALL 364 (375)
T ss_pred Hhh
Confidence 443
No 31
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3e-40 Score=397.27 Aligned_cols=323 Identities=19% Similarity=0.258 Sum_probs=271.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-------CcHHHHHHHhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-------LTVEDVLNVID 715 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-------~~~e~v~~i~~ 715 (1190)
.|||||+|+|++ +++++++++++|+++++++++++..+.....+|+.|..+ .+.+.++++++
T Consensus 2 ~~kvLi~~~gei-----------a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~ 70 (472)
T PRK07178 2 IKKILIANRGEI-----------AVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAV 70 (472)
T ss_pred CcEEEEECCcHH-----------HHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHH
Confidence 479999999996 888899999999999999999999988888899988754 45789999999
Q ss_pred hcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee--e
Q 001014 716 LERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI--A 792 (1190)
Q Consensus 716 ~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~--~ 792 (1190)
++++|+|+|++|.. ....++..++ +.| ++++||++++++++.||..++++|+++|||+|++.. +
T Consensus 71 ~~~~D~I~pg~g~lse~~~~a~~~e----------~~G---i~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~ 137 (472)
T PRK07178 71 ETGCDALHPGYGFLSENAELAEICA----------ERG---IKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNL 137 (472)
T ss_pred HHCCCEEEeCCCCcccCHHHHHHHH----------HcC---CCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCC
Confidence 99999999988754 3335677777 889 999999999999999999999999999999988853 7
Q ss_pred cCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecCC
Q 001014 793 KSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADSC 868 (1190)
Q Consensus 793 ~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~~ 868 (1190)
.+.+++.++++++|||+||||+.++||+||.+|+|.+||.++++.+.. .+...++++|+||++++|++|++++|++
T Consensus 138 ~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~ 217 (472)
T PRK07178 138 ADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSH 217 (472)
T ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECC
Confidence 899999999999999999999999999999999999999998876432 3445689999999889999999999988
Q ss_pred CcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 869 GNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 869 G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
|+++...-.+ .+... ........|++.++++..+++.+.+.+++++|||.|++++||++|++|++||+|||||+++
T Consensus 218 G~~v~~~er~~s~~~~---~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~ 294 (472)
T PRK07178 218 GNVVHLFERDCSIQRR---NQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQV 294 (472)
T ss_pred CCEEEEEccccceEec---CcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCC
Confidence 8876532111 11110 1112223466689999999999999999999999999999999987889999999999999
Q ss_pred ChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC
Q 001014 948 TVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL 994 (1190)
Q Consensus 948 s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~ 994 (1190)
+++++..++|+|++++++++++|++++... .......+++...+.
T Consensus 295 ~~~~te~~tGvdl~~~~ir~a~G~~l~~~~--~~~~~~g~ai~~ri~ 339 (472)
T PRK07178 295 EHTITEEITGIDIVREQIRIASGLPLSYKQ--EDIQHRGFALQFRIN 339 (472)
T ss_pred CccceeeeeCcCHHHHHHHHHCCCCCCCcc--ccCCcceEEEEEEEe
Confidence 999999999999999999999999987421 122334555655444
No 32
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.9e-40 Score=398.22 Aligned_cols=323 Identities=23% Similarity=0.314 Sum_probs=272.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i~ 714 (1190)
.|||||+|+|.. +++++++++++|+++++++++++..+....++|+.|.. .++.+.+++++
T Consensus 2 ~~kvLIan~Gei-----------a~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a 70 (499)
T PRK08654 2 FKKILIANRGEI-----------AIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVA 70 (499)
T ss_pred cceEEEECCcHH-----------HHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHH
Confidence 489999999996 88899999999999999998888777777789998863 24689999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee--
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI-- 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~-- 791 (1190)
+++++|+|+|++|.. +...++..++ +.| ++++||++++++++.||..++++|+++|||+|++..
T Consensus 71 ~~~~~daI~pg~gflsE~~~~a~~~e----------~~g---i~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~ 137 (499)
T PRK08654 71 KKAGADAIHPGYGFLAENPEFAKACE----------KAG---IVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEG 137 (499)
T ss_pred HHhCCCEEEECCCccccCHHHHHHHH----------HCC---CcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcC
Confidence 999999999988765 3446778888 889 999999999999999999999999999999998864
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhH----hhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAV----EVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++++|||+||||+.|+||+||++|++.+||.++++.+. ..+++.+++||+||++++|++|++++|+
T Consensus 138 v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~ 217 (499)
T PRK08654 138 IEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADK 217 (499)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcC
Confidence 689999999999999999999999999999999999999999998754 2344568999999987899999999999
Q ss_pred CCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 868 CGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
+|+++.++..+...+. .| .......|++.+++++.+++.+.+.++++++||.|++++||++ .+|++||+|||||+++
T Consensus 218 ~G~vv~l~~recsiqr-r~-qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~-~~g~~yflEiNpRlqv 294 (499)
T PRK08654 218 HGNVIHLGDRECSIQR-RH-QKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLY-SNGNFYFLEMNTRLQV 294 (499)
T ss_pred CCCEEEEeeecccccc-Cc-cceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEE-ECCcEEEEEEECCCCC
Confidence 8988766543311110 01 0111223666799999999999999999999999999999999 6789999999999999
Q ss_pred ChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC
Q 001014 948 TVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL 994 (1190)
Q Consensus 948 s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~ 994 (1190)
+++++..++|+|++++++++++|.+++... .......+++.+.+.
T Consensus 295 eh~vte~~tGvDlv~~~i~~A~G~~l~~~~--~~~~~~g~ai~~ri~ 339 (499)
T PRK08654 295 EHPITEMVTGIDIVKEQIKIAAGEELSFKQ--EDITIRGHAIECRIN 339 (499)
T ss_pred CCceeehhhCCCHHHHHHHHhcCCCCCCcc--cccccceEEEEEEEE
Confidence 999999999999999999999999987321 123445667766554
No 33
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=2.3e-40 Score=397.71 Aligned_cols=366 Identities=19% Similarity=0.272 Sum_probs=286.4
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i~ 714 (1190)
.|||||+|+|++ +++++++++++|++|++++++++..+.....+|+.|.. .++.+.++++|
T Consensus 2 ~kkili~g~g~~-----------~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a 70 (449)
T TIGR00514 2 LDKILIANRGEI-----------ALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAA 70 (449)
T ss_pred cceEEEeCCCHH-----------HHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHH
Confidence 589999999996 88889999999999999998777666667789988764 24477899999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--e
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG--I 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~--~ 791 (1190)
+++++|+|+|.++.. ....++..++ +.| ++++|++++++++++||..++++|+++|||+|++. .
T Consensus 71 ~~~~id~I~pg~g~~se~~~~a~~~e----------~~G---i~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~ 137 (449)
T TIGR00514 71 EITGADAIHPGYGFLSENANFAEQCE----------RSG---FTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGL 137 (449)
T ss_pred HHhCCCEEEeCCCccccCHHHHHHHH----------HCC---CcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccC
Confidence 999999999988643 2334667777 889 99999999999999999999999999999999874 6
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++++|||+||||..++||+|+.+++|.+||..+++.+.. .....+++||+||++++|+++++++|+
T Consensus 138 ~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~ 217 (449)
T TIGR00514 138 VEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADK 217 (449)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcC
Confidence 7899999999999999999999999999999999999999999986532 234568999999977799999999998
Q ss_pred CCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 868 CGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
+|++..++..+...+ .+........|++.++++..+++++.+.+++++||+.|++++||+++.+|++||||||||+++
T Consensus 218 ~g~~~~~~~~~~~~~--~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~ 295 (449)
T TIGR00514 218 YGNAIYLGERDCSIQ--RRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQV 295 (449)
T ss_pred CCCEEEEeccccCce--ecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCC
Confidence 888876543211000 000111112366679999999999999999999999999999999976889999999999999
Q ss_pred ChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcc------------------cCCCce-----
Q 001014 948 TVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEK------------------FQGCDV----- 1004 (1190)
Q Consensus 948 s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~------------------~~~~~~----- 1004 (1190)
+++++..++|+|+++.++++++|++++.... ......+++...+.+-+. -+|+..
T Consensus 296 ~~~~~~~~tGvdl~~~~i~~a~G~~l~~~~~--~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~ 373 (449)
T TIGR00514 296 EHPVTEMITGVDLIKEQIRIAAGEPLSLKQE--DVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVY 373 (449)
T ss_pred CcceeehhcCCcHHHHHHHHHCCCCCCCccc--cCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCcc
Confidence 9999899999999999999999999873210 111122232221111100 111111
Q ss_pred ---eeCCccc-ccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1005 ---LLGPEMR-STGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1005 ---~lg~~~r-s~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
.+.+... ..|+|++.|+|.+||+.++.++...
T Consensus 374 ~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~ 409 (449)
T TIGR00514 374 SGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSE 409 (449)
T ss_pred CCCEeCccccccceEEEEEcCCHHHHHHHHHHHHhh
Confidence 1111111 3689999999999999988887653
No 34
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=6.5e-40 Score=398.33 Aligned_cols=393 Identities=15% Similarity=0.154 Sum_probs=306.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-CCcHHHHHHHhhhcCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-PLTVEDVLNVIDLERP 719 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-p~~~e~v~~i~~~~~~ 719 (1190)
...|||+|||||+. +.+.+++++++|+++++++.+|+.+... ++|+.+.. ..+.+.+.+++++ +
T Consensus 20 ~~~k~IgIIGgGql-----------g~mla~aA~~lG~~Vi~ld~~~~apa~~--~AD~~~v~~~~D~~~l~~~a~~--~ 84 (577)
T PLN02948 20 VSETVVGVLGGGQL-----------GRMLCQAASQMGIKVKVLDPLEDCPASS--VAARHVVGSFDDRAAVREFAKR--C 84 (577)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCCchhh--hCceeeeCCCCCHHHHHHHHHH--C
Confidence 56789999999984 5566999999999999999998866544 57777654 3568889899977 5
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|.|.+.++... ...+..++ +.| ++ ++|+++++.+++||..+|++|+++|||+|+|..+.+.+++.
T Consensus 85 dvIt~e~e~v~-~~~l~~le----------~~g---i~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~ 149 (577)
T PLN02948 85 DVLTVEIEHVD-VDTLEALE----------KQG---VD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAE 149 (577)
T ss_pred CEEEEecCCCC-HHHHHHHH----------hcC---Cc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHH
Confidence 66654444332 23446666 778 65 46899999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee
Q 001014 800 AIAKEIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME 878 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e 878 (1190)
++++++|||+|+||..++ +|+|+.+++|.+||+++++.+.. .+.+++||+||++.+|++|.++++.+|++..+++.|
T Consensus 150 ~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~--~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~E 227 (577)
T PLN02948 150 KAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGG--FERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVVE 227 (577)
T ss_pred HHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhC--CCCcEEEEecCCCCeEEEEEEEECCCCCEEEecCcc
Confidence 999999999999999877 79999999999999999988643 245899999996669999999998888888888877
Q ss_pred eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCC
Q 001014 879 HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGH 958 (1190)
Q Consensus 879 ~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~ 958 (1190)
+....++. .....|+ .++++..+++++++.+++++|+++|++++||+++.+|.+||+|||||+|++.+++..++++
T Consensus 228 ~~~~~~~~---~~~~~Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~ 303 (577)
T PLN02948 228 TIHKDNIC---HVVEAPA-NVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYT 303 (577)
T ss_pred cEEECCee---EEEEECC-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccC
Confidence 66443221 1123455 6999999999999999999999999999999998788999999999999998898999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCcc-ccC-CeeEEe------e---ccC-CCcccCCCceee-CC----cccccceeeeeeC
Q 001014 959 PLAKYAALVMSGKSLNDLGFTKE-VIP-KHVSVK------E---AVL-PFEKFQGCDVLL-GP----EMRSTGEVMGIDM 1021 (1190)
Q Consensus 959 ~l~~~~~~~~lG~~l~~~~~~~~-~~~-~~~~vk------~---~~~-~~~~~~~~~~~l-g~----~~rs~G~v~~~g~ 1021 (1190)
|++++++|+++|.|++....... ..+ ....-. . ..+ .....|+...++ |+ ..|++|||+..|.
T Consensus 304 s~fe~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~~~v~~ygk~~~r~~rkmGhV~~~g~ 383 (577)
T PLN02948 304 SQFEQHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKMGHITVVGP 383 (577)
T ss_pred CHHHHHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHhhCCCCEEEEecCCCCCCCCeeEEEEEecC
Confidence 99999999999999986432221 000 000000 0 001 111246677777 65 3578999999999
Q ss_pred CHHHHHHHHHHHcCC---C--CCC--CCce-eeecCCCChhHHHHHHHHHHHCCCe
Q 001014 1022 SFPIAFAKAQIAAGQ---K--LPL--SGTV-FLSLNDLTKPHLERIAKAFLDIGFK 1069 (1190)
Q Consensus 1022 ~~~eA~~ka~~~~~~---~--~p~--~g~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 1069 (1190)
|.+++..++..+... . .+. .+.| ++.-+..|.+.+.+.++.|.++|..
T Consensus 384 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~ 439 (577)
T PLN02948 384 SAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVP 439 (577)
T ss_pred CHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCC
Confidence 999999988776532 1 111 1233 3445667788888888888888865
No 35
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=6.9e-40 Score=383.32 Aligned_cols=355 Identities=20% Similarity=0.276 Sum_probs=293.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d~ 170 (1190)
+++|+|||+|++ |++++.+++++|++|++++++++.++ ..++|..++.++ |.+.+.++++ .+|+
T Consensus 2 ~~~igilG~Gql-----------~~ml~~aa~~lG~~v~~~d~~~~~pa--~~~ad~~~~~~~~D~~~l~~~a~--~~dv 66 (372)
T PRK06019 2 MKTIGIIGGGQL-----------GRMLALAAAPLGYKVIVLDPDPDSPA--AQVADEVIVADYDDVAALRELAE--QCDV 66 (372)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCCch--hHhCceEEecCCCCHHHHHHHHh--cCCE
Confidence 358999999976 78999999999999999999888765 567888886554 7788888887 7899
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|.+.++... .... ..+++. ..++|+++++.+++||..+|++|+++|||+|++..+++.+++.++.+++| |
T Consensus 67 it~e~e~i~-~~~l------~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g-~ 136 (372)
T PRK06019 67 ITYEFENVP-AEAL------DALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLG-L 136 (372)
T ss_pred EEeCcCCCC-HHHH------HHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC-C
Confidence 876655221 1111 123333 34679999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCC-CCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcc
Q 001014 251 PLIIRPAFT-LGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVH 329 (1190)
Q Consensus 251 PvVVKP~~g-~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~ 329 (1190)
|+|+||+.+ ++|+|+.++++.+|+.+++..+ ...+++||+||++.+|+++.++++.+|++.+++..++....++.
T Consensus 137 P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e~~~~~gi~ 212 (372)
T PRK06019 137 PAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL----GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENVHRNGIL 212 (372)
T ss_pred cEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc----CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcccEEeCCEE
Confidence 999999985 6899999999999999998875 24689999999965999999999888888888777766543332
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 001014 330 TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMA 409 (1190)
Q Consensus 330 ~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~ 409 (1190)
.....|+. ++++..+++++++.+++++||+. |++++||++++ +|++||+|||||++++.+++..+||+++++++
T Consensus 213 ---~~~~~pa~-~~~~~~~~~~~~a~~i~~~L~~~-G~~~vEff~~~-dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ 286 (372)
T PRK06019 213 ---RTSIAPAR-ISAELQAQAEEIASRIAEELDYV-GVLAVEFFVTG-DGELLVNEIAPRPHNSGHWTIEACSTSQFEQH 286 (372)
T ss_pred ---EEEECCCC-CCHHHHHHHHHHHHHHHHHcCcc-ceeEEEEEEcC-CCeEEEEEecCCccCcccEEhhhcCccHHHHH
Confidence 23457886 99999999999999999999995 99999999986 78899999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCccccCCCCccccCCcCe--------EEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHH
Q 001014 410 AKLSVGYSLDQIPNDITKKTPASFEPSIDY--------VVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQ 481 (1190)
Q Consensus 410 ~~~alG~~l~~~~~~i~~~~~~~f~p~~~~--------v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ 481 (1190)
+++.+|+|++..... .++.+..-++. ...+.|.|.++.|.....+.+++| |||.+.|+|.+++.+
T Consensus 287 ira~~Glpl~~~~~~----~~~~m~nilg~~~~~~~~~~~~~~~~~~~~~ygk~~~~~~rk~---Ghv~~~~~~~~~~~~ 359 (372)
T PRK06019 287 LRAILGLPLGTTRLL----SPAVMVNLLGDDWLEPRWDALLALPGAHLHLYGKAEARPGRKM---GHVTVLGDDVEALLA 359 (372)
T ss_pred HHHHcCCCCCCcccc----CceEEEEEECchhhhhHHHHHhhCCCCEEEECCCCCCCCCCce---EEEEeecCCHHHHHH
Confidence 999999999854321 11111111110 112569999999988788888888 999999999999999
Q ss_pred HHHHhhh
Q 001014 482 KALRSLE 488 (1190)
Q Consensus 482 ka~~~l~ 488 (1190)
|+.+...
T Consensus 360 ~~~~~~~ 366 (372)
T PRK06019 360 KLEALAP 366 (372)
T ss_pred HHHHHHh
Confidence 9998865
No 36
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.8e-39 Score=389.48 Aligned_cols=306 Identities=23% Similarity=0.345 Sum_probs=258.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceee-cCC-------cHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYF-EPL-------TVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~-~p~-------~~e~v~~i~ 714 (1190)
.|||||+|+|++ +++++++++++|++++.+.+.++..+....++|+.|. .|. +.+.++++|
T Consensus 2 ~kkvli~g~G~~-----------~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~ 70 (447)
T PRK05586 2 FKKILIANRGEI-----------AVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISAT 70 (447)
T ss_pred cceEEEECCcHH-----------HHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHH
Confidence 489999999996 7888999999999999887665555555567898776 342 467899999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--ee
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG--GI 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~--~~ 791 (1190)
+++++|+|+|+++.. ....++..++ ..| ++++||+++++.+++||..++++++++|||+|++ ..
T Consensus 71 ~~~~~d~i~p~~~~~~E~~~~a~~~~----------~~g---i~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~ 137 (447)
T PRK05586 71 VLTGAQAIHPGFGFLSENSKFAKMCK----------ECN---IVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGE 137 (447)
T ss_pred HHcCCCEEEcCccccccCHHHHHHHH----------HCC---CcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccc
Confidence 999999999987655 3335666666 889 9999999999999999999999999999999998 46
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++++|||+||||..++||+|+.+++|.+||.++++.+.. ...+.+++||+||++++|+++++++|.
T Consensus 138 ~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~ 217 (447)
T PRK05586 138 IENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDN 217 (447)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECC
Confidence 7899999999999999999999999999999999999999999886543 233568999999966799999999998
Q ss_pred CCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 868 CGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 868 ~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
.|+++.++-.+. ..+ +........|.+.++++..+++.+.+.+++++||+.|++++||++|++|++||+|||||++
T Consensus 218 ~G~~~~~~~~~~~~~~---~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~ 294 (447)
T PRK05586 218 YGNVVHLGERDCSLQR---RNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQ 294 (447)
T ss_pred CCCEEEEeceecceEe---cccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCC
Confidence 888876643221 111 1111222236667999999999999999999999999999999998788999999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCC
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
++++++..++|+|++++++++++|++++.
T Consensus 295 ~~~~~t~~~tGid~~~~~i~~a~G~~l~~ 323 (447)
T PRK05586 295 VEHPITEMITGVDLVKEQIKIAYGEKLSI 323 (447)
T ss_pred CCccceehhhCCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999998863
No 37
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=1.6e-39 Score=391.20 Aligned_cols=323 Identities=18% Similarity=0.281 Sum_probs=269.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-------CcHHHHHHHhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-------LTVEDVLNVID 715 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-------~~~e~v~~i~~ 715 (1190)
.|||||+|+|.+ +++++++++++|+++++++++|+..+.....+|+.|..+ .+.+.++++++
T Consensus 2 ~kkiLi~~~ge~-----------a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~ 70 (478)
T PRK08463 2 IHKILIANRGEI-----------AVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAK 70 (478)
T ss_pred ccEEEEECCCHH-----------HHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHH
Confidence 489999999996 889999999999999999999988888878899988654 36789999999
Q ss_pred hcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee-e-
Q 001014 716 LERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI-A- 792 (1190)
Q Consensus 716 ~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~-~- 792 (1190)
++++|+|+|+++.. ....++..++ +.| ++++||++++++.+.||..++++++++|||+|++.. .
T Consensus 71 ~~~iDaI~pg~g~lsE~~~~a~~~e----------~~G---i~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~ 137 (478)
T PRK08463 71 ACGADAIHPGYGFLSENYEFAKAVE----------DAG---IIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLN 137 (478)
T ss_pred HhCCCEEEECCCccccCHHHHHHHH----------HCC---CceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccC
Confidence 99999999988764 3345778888 899 999999999999999999999999999999988543 2
Q ss_pred -cCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHh----HhhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 793 -KSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENA----VEVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 793 -~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~----~~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
.+.+++.++++++|||+|+||+.|+||+||.++++.+||+.+++.+ ...+.+..++||+||++++|+++++++|+
T Consensus 138 ~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~ 217 (478)
T PRK08463 138 SESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDN 217 (478)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcC
Confidence 5788999999999999999999999999999999999999988853 33456678999999977899999999998
Q ss_pred CCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 868 CGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 868 ~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
.|+++.+.-.+ .+... | .......|++.++++..+++++.+.+++++||+.|++++||+++.+|++||+|||||++
T Consensus 218 ~g~v~~~~er~~s~~~~--~-~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~ 294 (478)
T PRK08463 218 YGNIIHLCERDCSIQRR--H-QKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQ 294 (478)
T ss_pred CCCEEEEeccCCccccc--c-CceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcC
Confidence 88876543111 11110 1 01222346667999999999999999999999999999999997778999999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL 994 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~ 994 (1190)
++++++..++|+|++++++++++|++++... .......+++.+.+.
T Consensus 295 ~~~~~te~~tGidlv~~~ir~a~G~~l~~~~--~~~~~~g~ai~~ri~ 340 (478)
T PRK08463 295 VEHGVTEEITGIDLIVRQIRIAAGEILDLEQ--SDIKPRGFAIEARIT 340 (478)
T ss_pred CCcceeeHhhCCCHHHHHHHHHcCCCCCCcc--ccCCCceEEEEEEEe
Confidence 9999999999999999999999999886211 122344566665543
No 38
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=2.1e-38 Score=410.76 Aligned_cols=398 Identities=18% Similarity=0.265 Sum_probs=313.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-C-------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-P-------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p-------~~~~~v~~i~ 163 (1190)
+|||||+|+|.+ +.+++++|+++|+++++++++++..+....++|+.++. | .+.+.+++++
T Consensus 1 ~~kvLI~g~Gei-----------a~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a 69 (1201)
T TIGR02712 1 FDTVLIANRGEI-----------AVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAA 69 (1201)
T ss_pred CcEEEEECCCHH-----------HHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHH
Confidence 369999999977 67999999999999999999988887777889998852 2 3779999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC-eeecCCHHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP-SGIGNTLDECIS 242 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~-~~~v~s~~e~~~ 242 (1190)
+++++|+|+|+++ ...++... ...++..|++++||++++++++.||..+|++|+++|||+|+ +..+++.+++.+
T Consensus 70 ~~~~idaIiPG~g-flsE~~~~----a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~ 144 (1201)
T TIGR02712 70 KKTGAQAIHPGYG-FLSENAAF----AEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALE 144 (1201)
T ss_pred HHHCCCEEEeCCc-ccccCHHH----HHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHH
Confidence 9999999999875 22333322 45788999999999999999999999999999999999866 667899999999
Q ss_pred HHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh----cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE
Q 001014 243 IANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA----ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 243 ~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
+++++| ||+||||..++||+|+.+|+|.+||.++++.+.. .+.+..++||+||+|.+|+++++++|++|+++.+.
T Consensus 145 ~a~~ig-yPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg 223 (1201)
T TIGR02712 145 AAKEIG-YPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALG 223 (1201)
T ss_pred HHHhcC-CeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEee
Confidence 999999 9999999999999999999999999999887653 22345799999999669999999999888887764
Q ss_pred eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHH
Q 001014 319 SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALAS 398 (1190)
Q Consensus 319 ~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~ 398 (1190)
..+.. ...+....+..+|++.++++..+++++.+.++++++|+. |++++||+++++++++||||||||+++++++++
T Consensus 224 ~rd~s--~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~-G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte 300 (1201)
T TIGR02712 224 ERDCS--LQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYR-SAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTE 300 (1201)
T ss_pred EEEee--eEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCcc-ceEEEEEEEECCCCCEEEEEEECCcCcchhhHH
Confidence 32210 000124556678887799999999999999999999997 999999999975688999999999999999999
Q ss_pred HHhCCCHHHHHHHHHcCCCCCCCCccc----c---------CCCC-ccccCCcCeEE-eeecee-eecccCCCCcccCCC
Q 001014 399 KATGFPIAKMAAKLSVGYSLDQIPNDI----T---------KKTP-ASFEPSIDYVV-TKIPRF-AFEKFPGSEPLLTTQ 462 (1190)
Q Consensus 399 ~atG~~l~~~~~~~alG~~l~~~~~~i----~---------~~~~-~~f~p~~~~v~-~k~p~~-~~~~~~~~~~~l~~~ 462 (1190)
.++|+|++++++++++|.+++...... . .+++ ..|.|+.+.+. +..|.. ....+.....++...
T Consensus 301 ~~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~~vrvd~~v~~G~~V~~~ 380 (1201)
T TIGR02712 301 MVTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPDDVRVDTWVETGTEVSPE 380 (1201)
T ss_pred HHhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCCeEEEeceecCCCEECCc
Confidence 999999999999999999775332111 1 1122 23455443322 122211 011111112222222
Q ss_pred C-CcEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 463 M-KSVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 463 ~-~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
. ..+|+|++.|.|+++|++|+.++++ +.+.|+.+| .+.|...|.+|.
T Consensus 381 ~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G~~tn--------~~~l~~~~~~~~ 429 (1201)
T TIGR02712 381 YDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETN--------LDYLRSILSSET 429 (1201)
T ss_pred cCCCeEEEEEEECCHHHHHHHHHHHHhceEEcCcCcC--------HHHHHHHhcChh
Confidence 2 3589999999999999999999997 788887655 567777777775
No 39
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=9.7e-39 Score=383.67 Aligned_cols=326 Identities=19% Similarity=0.260 Sum_probs=264.1
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHH
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVL 711 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~ 711 (1190)
|...|||||+|+|++ +++++++++++|++++++.++++..+....++|+.+.. ..+.+.++
T Consensus 2 ~~~~~~vLi~~~gei-----------a~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~ 70 (467)
T PRK12833 2 PSRIRKVLVANRGEI-----------AVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAIL 70 (467)
T ss_pred CCCCcEEEEECCcHH-----------HHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHH
Confidence 456799999999996 78889999999999999987666555555678888742 24688999
Q ss_pred HHhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce
Q 001014 712 NVIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG 790 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~ 790 (1190)
++++++++|+|+|.++.. ....++..++ +.| ++++||++++++++.||..++++|+++|||+|++.
T Consensus 71 ~~a~~~~~daI~pg~g~lsE~~~~~~~~e----------~~g---i~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~ 137 (467)
T PRK12833 71 AAARQCGADAIHPGYGFLSENAAFAEAVE----------AAG---LIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGS 137 (467)
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHH----------HcC---CCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCc
Confidence 999999999999987644 3335667777 889 99999999999999999999999999999999885
Q ss_pred --eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhH----hhCCCCcEEEEEecCCcceEEEeEE
Q 001014 791 --IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAV----EVDPERPVLIDKYLSDAIEIDVDAL 864 (1190)
Q Consensus 791 --~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vliEefI~~g~E~~v~v~ 864 (1190)
.+.+.+++.++++++|||||+||..++||+||++|+|.+||.++++.+. ..++...++||+||++++|++|+++
T Consensus 138 ~~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~ 217 (467)
T PRK12833 138 DGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQIL 217 (467)
T ss_pred CcCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEE
Confidence 8899999999999999999999999999999999999999999987643 2234568999999977899999999
Q ss_pred ecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe-cCCCEEEEEEcc
Q 001014 865 ADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT-TSGDVYLLEANP 943 (1190)
Q Consensus 865 ~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d-~~g~~~viEiNp 943 (1190)
+|++ +++.....+...+. .+. ......|+..++++..+++.+.+.+++++|||+|++++||+++ .+|++|||||||
T Consensus 218 ~dg~-~~~~~~~~~~~~~r-~~~-ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNp 294 (467)
T PRK12833 218 GDGE-RVVHLFERECSLQR-RRQ-KILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 294 (467)
T ss_pred eCCC-cEEEEEEeeccccc-CCc-cEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEEC
Confidence 9876 33322211111000 000 0112235567899999999999999999999999999999997 468899999999
Q ss_pred CCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC
Q 001014 944 RASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL 994 (1190)
Q Consensus 944 R~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~ 994 (1190)
|++++++++..++|+|++++++++++|++++... .......+++...+.
T Consensus 295 R~~~~~~~te~~tGvdl~~~~i~~a~G~~l~~~~--~~~~~~g~ai~~ri~ 343 (467)
T PRK12833 295 RIQVEHPVTEAITGIDLVQEMLRIADGEPLRFAQ--GDIALRGAALECRIN 343 (467)
T ss_pred CCCcchhhhHHHhCCCHHHHHHHHHCCCCCCCCc--cccCcceEEEEEEEe
Confidence 9999999999999999999999999999987311 122344555655554
No 40
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.7e-39 Score=365.14 Aligned_cols=385 Identities=25% Similarity=0.400 Sum_probs=336.4
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-----C----CCHHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-----P----MTPELVEQVL 163 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-----p----~~~~~v~~i~ 163 (1190)
+||||.+.|.++| .+.+++.++|.+++.+.+..+....+..-||+.|+. | +..+.+.+++
T Consensus 34 ~kvlVANRgEIaI-----------RvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~ia 102 (1176)
T KOG0369|consen 34 NKVLVANRGEIAI-----------RVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIA 102 (1176)
T ss_pred ceeEEecCCcchh-----------HHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHH
Confidence 6999999999976 899999999999999999999888888899999842 2 3568999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHh----hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe--eecCCH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAES----GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS--GIGNTL 237 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~----~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~ 237 (1190)
+++++|+|+|++| +|+|+ ..+...|+.++||+++.+..+.||...|.+.-++|+|+.|. ..+++.
T Consensus 103 k~~~vdavHPGYG---------FLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~ 173 (1176)
T KOG0369|consen 103 KKHNVDAVHPGYG---------FLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTV 173 (1176)
T ss_pred HHcCCCeecCCcc---------ccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccH
Confidence 9999999999999 66664 35677899999999999999999999999999999998665 578899
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH----hcCCCCcEEEeeecCCCeeeeEEEEEeCCCc
Q 001014 238 DECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL----AASLTSQVLVEKSLLGWKEYELEVMRDLADN 313 (1190)
Q Consensus 238 ~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~ 313 (1190)
+|+.+|+++.| +|+|+|.++|+||+|+++|++.++++++++++. ..++++.++||+||+-+++++|+.+.|..||
T Consensus 174 ~EA~eF~k~yG-~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GN 252 (1176)
T KOG0369|consen 174 EEALEFVKEYG-LPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGN 252 (1176)
T ss_pred HHHHHHHHhcC-CcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCC
Confidence 99999999999 999999999999999999999999999887765 4577899999999999999999999999999
Q ss_pred EEEE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCC
Q 001014 314 VVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPR 389 (1190)
Q Consensus 314 ~~~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR 389 (1190)
++++ |++++.+ +..+.++|+.+|+.+.++.|.+.+.++++..||. ....+||.+|. .|+.||||||||
T Consensus 253 vvHLyERDCSvQRRH------QKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~-NAGTvEFLvD~-~g~hYFIEvN~R 324 (1176)
T KOG0369|consen 253 VVHLYERDCSVQRRH------QKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYE-NAGTVEFLVDQ-KGRHYFIEVNPR 324 (1176)
T ss_pred EEEEeecccchhhhh------cceeEecccccCCHHHHHHHHHHHHHHHHHhCcc-cCCceEEEEcc-CCCEEEEEecCc
Confidence 9988 8888876 8899999999999999999999999999999997 88899999997 899999999999
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHcCCCCCCC--------------CccccCCCCc-cccCCcCeEEeeeceeeecccCC
Q 001014 390 VSRSSALASKATGFPIAKMAAKLSVGYSLDQI--------------PNDITKKTPA-SFEPSIDYVVTKIPRFAFEKFPG 454 (1190)
Q Consensus 390 ~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~--------------~~~i~~~~~~-~f~p~~~~v~~k~p~~~~~~~~~ 454 (1190)
++-.+.+++..||+|+....++++-|..|+++ +-+++.++|+ .|.|..+.+.+ |......|
T Consensus 325 lQVEHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEV----fRSgeGmG 400 (1176)
T KOG0369|consen 325 LQVEHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEV----FRSGEGMG 400 (1176)
T ss_pred eeeeeeeeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEeccCccccCCCCCceEEE----EEeCCCce
Confidence 99999999999999999999999999999987 2234566774 69999996654 32211111
Q ss_pred ---------CCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhh-hcCccCCCCCCCCCCCCCHHHHHhHhcCCCc
Q 001014 455 ---------SEPLLTTQMKS-VGEAMALGRTFQESFQKALRSL-ECGFSGWGCSNVKELDWDWEQLKYSLRVPNP 518 (1190)
Q Consensus 455 ---------~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l-~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~~ 518 (1190)
+...+.++++| +-.|++.|+|.+-+..|+.|+| ++.+.|+.+| ..+|++.|.+|..
T Consensus 401 iRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRGVKTN--------IpFllnvL~n~~F 467 (1176)
T KOG0369|consen 401 IRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRGVKTN--------IPFLLNVLTNPVF 467 (1176)
T ss_pred EeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcceecC--------cHHHHHHhcCcce
Confidence 12355667777 7889999999999999999999 5888998766 3478888888863
No 41
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.2e-38 Score=384.21 Aligned_cols=306 Identities=24% Similarity=0.341 Sum_probs=258.3
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-C-------CcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-P-------LTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-p-------~~~e~v~~i~ 714 (1190)
.|||||+|+|+. +++++++++++|+++++++++++..+.....+|+.+.. | .+.+.++++|
T Consensus 2 ~k~iLi~g~g~~-----------a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a 70 (451)
T PRK08591 2 FDKILIANRGEI-----------ALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAA 70 (451)
T ss_pred cceEEEECCCHH-----------HHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHH
Confidence 589999999996 77889999999999999988877666666678887753 3 3578999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--ee
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG--GI 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~--~~ 791 (1190)
+++++|+|++.++.. ....++..++ +.| ++++||+++++.+++||..++++|+++|||+|++ ..
T Consensus 71 ~~~~id~I~p~~~~~~e~~~~~~~~e----------~~g---i~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~ 137 (451)
T PRK08591 71 EITGADAIHPGYGFLSENADFAEICE----------DSG---FTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGP 137 (451)
T ss_pred HHhCCCEEEECCCccccCHHHHHHHH----------HCC---CceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccc
Confidence 999999999987644 2235667777 899 9999999999999999999999999999999987 47
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++.+|||+||||..++||+|+.+|+|.+||.++++.+.. ..+...++||+||++++|+++++++|+
T Consensus 138 v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~ 217 (451)
T PRK08591 138 VDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADG 217 (451)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcC
Confidence 8899999999999999999999999999999999999999999987543 234567999999977789999999998
Q ss_pred CCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 868 CGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 868 ~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
+|+++.++..+. ...... ......|++.++++..+++.+.+.+++++||+.|++++||+++.+|++||+|||||++
T Consensus 218 ~g~~~~~~~~~~~~~~~~~---~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~ 294 (451)
T PRK08591 218 HGNAIHLGERDCSLQRRHQ---KVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQ 294 (451)
T ss_pred CCCEEEEecccccceecce---eEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCC
Confidence 888765432211 100000 0111225557899999999999999999999999999999996688999999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCC
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
++.+++..++|+|++++++++++|++++.
T Consensus 295 ~~~~~~~~~~Gvdl~~~~i~~a~G~~l~~ 323 (451)
T PRK08591 295 VEHPVTEMITGVDLVKEQIRIAAGEPLSI 323 (451)
T ss_pred ccchhhhhhhCCCHHHHHHHHHCCCCCCC
Confidence 99999889999999999999999998874
No 42
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=1.2e-38 Score=376.37 Aligned_cols=362 Identities=20% Similarity=0.315 Sum_probs=285.3
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCCEEE
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d~Vi 172 (1190)
||||||+|++ +++++++|+++|++|++++++++.+. ..++|..++.+ .|.+.+.++++++++|+|+
T Consensus 1 kililG~g~~-----------~~~l~~aa~~~G~~v~~~d~~~~~~~--~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~ 67 (380)
T TIGR01142 1 RVLLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAPA--MQVAHRSYVINMLDGDALRAVIEREKPDYIV 67 (380)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCCch--hhhCceEEEcCCCCHHHHHHHHHHhCCCEEE
Confidence 6999999965 78999999999999999999988766 46788887544 5889999999999999999
Q ss_pred ecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 173 PTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAM-KTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 173 p~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l-~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+.++.. .... ...+++.|+++ .+++++++++.||..+++++ +++|||+|++..+++.+++.++.+++| ||
T Consensus 68 ~~~e~v-~~~~------~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g-~P 138 (380)
T TIGR01142 68 PEIEAI-ATDA------LFELEKEGYFV-VPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIG-YP 138 (380)
T ss_pred eccCcc-CHHH------HHHHHhcCCee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC-CC
Confidence 988742 1111 12467788764 47999999999999999985 899999999999999999999889999 99
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC--CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcc
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS--LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVH 329 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~ 329 (1190)
+|+||+.+++|+|+.+|+|.+||.++++.+...+ ..+++||||||+|..|+++.++++.+|+..+....+++...+..
T Consensus 139 ~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~~~~~~~~~~ 218 (380)
T TIGR01142 139 CVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPIGHRQIDGDY 218 (380)
T ss_pred EEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcceEEeCCee
Confidence 9999999999999999999999999998875432 24579999999976899999998777775554334443322211
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 001014 330 TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMA 409 (1190)
Q Consensus 330 ~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~ 409 (1190)
.....|+. ++++..+++.+.+.+++++||+. |++|+||+++ ++++||+|||||++++.......+|+|+++++
T Consensus 219 ---~~~~~p~~-l~~~~~~~i~~~a~~~~~~l~~~-G~~~ie~~~~--~~~~~viEinpR~~~~~~~~~~~~g~~~~~~~ 291 (380)
T TIGR01142 219 ---HESWQPQE-MSEKALEEAQRIAKRITDALGGY-GLFGVELFVK--GDEVIFSEVSPRPHDTGMVTLISQGLSEFALH 291 (380)
T ss_pred ---EEEECCCC-CCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEE--CCcEEEEEeecCCCCCceEEeeecCCCHHHHH
Confidence 12356776 99999999999999999999995 9999999999 45899999999999986655556699999999
Q ss_pred HHHHcCCCCCCCCccccCCCCccccCC-cC---eE-----EeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHH
Q 001014 410 AKLSVGYSLDQIPNDITKKTPASFEPS-ID---YV-----VTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESF 480 (1190)
Q Consensus 410 ~~~alG~~l~~~~~~i~~~~~~~f~p~-~~---~v-----~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~ 480 (1190)
+++++|++++........ ....+.+. .+ .+ ..+.|.|.++.|.....+.+ +++|||++.|.|.+|+.
T Consensus 292 ~r~~~G~~~~~~~~~~~~-~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~G~v~~~~~s~~~~~ 367 (380)
T TIGR01142 292 VRAILGLPIPGIPQLGPA-ASAVIKAKVTGYSPAFRGLEKALSVPNTQVRLFGKPEAYVG---RRLGVALATAKSVEAAR 367 (380)
T ss_pred HHHHcCCCCCCccccCCc-eEEEEEcccccccchhhHHHHHHcCCCCEEEECCCCcCCCC---CcCEEEEEecCCHHHHH
Confidence 999999998864321110 00112221 11 11 11447787777765444444 44599999999999999
Q ss_pred HHHHHhhh
Q 001014 481 QKALRSLE 488 (1190)
Q Consensus 481 ~ka~~~l~ 488 (1190)
+++.++++
T Consensus 368 ~~~~~~~~ 375 (380)
T TIGR01142 368 ERAEEVAH 375 (380)
T ss_pred HHHHHHHh
Confidence 99998765
No 43
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=100.00 E-value=1.7e-41 Score=325.54 Aligned_cols=123 Identities=48% Similarity=0.781 Sum_probs=102.3
Q ss_pred HHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhcCCCHHHHH
Q 001014 509 LKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSVSNMTKDDFYEVKRRGFSDKQIA 588 (1190)
Q Consensus 509 l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~g~~~~~~~ 588 (1190)
|++.|++|+|+|||++++|||||+|+++||++|+||||||+||++|+++|++|++. ..+++++.|++||++||||.|||
T Consensus 1 l~~~L~~Ptd~Rlf~i~eAlrrG~sveeI~e~T~ID~wFL~~i~~Iv~~e~~L~~~-~~~~~~~~L~~aK~~GFsD~~IA 79 (123)
T PF02787_consen 1 LEEKLRHPTDERLFAIAEALRRGYSVEEIHELTKIDPWFLEQIKNIVDMEKELKEY-LNELDPELLRKAKRLGFSDRQIA 79 (123)
T ss_dssp -HHHHHSTBTTHHHHHHHHHHTTB-HHHHHHHH---HHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHHHTT--HHHHH
T ss_pred ChhhhCCCCCcHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHcCCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999983 23469999999999999999999
Q ss_pred HHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeec
Q 001014 589 FATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSY 632 (1190)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~ 632 (1190)
++||+++++||++|+++||.|+||+||||||||+|.||||||||
T Consensus 80 ~l~~~~e~~vr~~R~~~~i~p~yk~VDTcA~EF~a~TpY~YstY 123 (123)
T PF02787_consen 80 RLWGVSEEEVRELRKEHGIVPVYKMVDTCAGEFEAKTPYYYSTY 123 (123)
T ss_dssp HHHTS-HHHHHHHHHHHT---EEEE--SBTTSS--SSEEEEEES
T ss_pred hccCCCHHHHHHHHHHcCCceeeeeecCccccccCCCceeeecC
Confidence 99999999999999999999999999999999999999999998
No 44
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=1.5e-38 Score=386.44 Aligned_cols=364 Identities=18% Similarity=0.218 Sum_probs=293.3
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERP 168 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~ 168 (1190)
.+.+||+|||+|++ +++++.+++++|++|++++++++.+. ..++|..++.+ .|.+.+.+++++ +
T Consensus 20 ~~~k~IgIIGgGql-----------g~mla~aA~~lG~~Vi~ld~~~~apa--~~~AD~~~v~~~~D~~~l~~~a~~--~ 84 (577)
T PLN02948 20 VSETVVGVLGGGQL-----------GRMLCQAASQMGIKVKVLDPLEDCPA--SSVAARHVVGSFDDRAAVREFAKR--C 84 (577)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCCch--hhhCceeeeCCCCCHHHHHHHHHH--C
Confidence 34679999999964 78999999999999999999888665 56788887655 477888888885 8
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
|+|.+..+... ... ...+++.|++ ++++++++.+++||..+|++|+++|||+|+|..+.+.+++.++.+++|
T Consensus 85 dvIt~e~e~v~---~~~----l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig 156 (577)
T PLN02948 85 DVLTVEIEHVD---VDT----LEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFG 156 (577)
T ss_pred CEEEEecCCCC---HHH----HHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcC
Confidence 98876655322 111 2357778876 468999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCC
Q 001014 249 EFPLIIRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMG 327 (1190)
Q Consensus 249 ~~PvVVKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g 327 (1190)
||+||||+.++ +|+|+.++++.+||.++++.+... ...++||+||+|.+|+++.++++.+|++.+++..++.+..+
T Consensus 157 -~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~--~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~E~~~~~~ 233 (577)
T PLN02948 157 -YPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF--ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVVETIHKDN 233 (577)
T ss_pred -CcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC--CCcEEEEecCCCCeEEEEEEEECCCCCEEEecCcccEEECC
Confidence 99999999766 799999999999999999887543 45899999999989999999998888877766555543211
Q ss_pred cccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 001014 328 VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407 (1190)
Q Consensus 328 ~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~ 407 (1190)
+ ......|+. ++++..+++++++.+++++|++. |++|+||++++ +|.+||+|||||++++.+++..++++|+++
T Consensus 234 ~---~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~-Gv~~vEffv~~-dG~v~v~EInpRpg~sGh~t~ea~~~s~fe 307 (577)
T PLN02948 234 I---CHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGA-GVFGVELFLLK-DGQILLNEVAPRPHNSGHYTIEACYTSQFE 307 (577)
T ss_pred e---eEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCC-eEEEEEEEEcC-CCcEEEEEEeCCCCCCCceeeecccCCHHH
Confidence 1 123357886 99999999999999999999985 99999999997 788999999999999888888999999999
Q ss_pred HHHHHHcCCCCCCCCcccc--------CCCCc--cccCCcCeE--EeeeceeeecccCCCCcccCCCCCcEEEEEEEeCC
Q 001014 408 MAAKLSVGYSLDQIPNDIT--------KKTPA--SFEPSIDYV--VTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRT 475 (1190)
Q Consensus 408 ~~~~~alG~~l~~~~~~i~--------~~~~~--~f~p~~~~v--~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~ 475 (1190)
+++++++|+|++....... +.... .+.+....+ ..+.|.|.++.|.....+.++.| |||++.|.|
T Consensus 308 ~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~~~v~~ygk~~~r~~rkm---GhV~~~g~~ 384 (577)
T PLN02948 308 QHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKM---GHITVVGPS 384 (577)
T ss_pred HHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHhhCCCCEEEEecCCCCCCCCee---EEEEEecCC
Confidence 9999999999986533221 11000 000110000 12458899988877666665555 999999999
Q ss_pred HHHHHHHHHHhhh
Q 001014 476 FQESFQKALRSLE 488 (1190)
Q Consensus 476 ~~ea~~ka~~~l~ 488 (1190)
.+++.+++.++++
T Consensus 385 ~~e~~~~~~~~~~ 397 (577)
T PLN02948 385 AAEVEARLDQLLA 397 (577)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 45
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-39 Score=355.80 Aligned_cols=384 Identities=20% Similarity=0.344 Sum_probs=315.9
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHHhhhc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVIDLE 717 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i~~~~ 717 (1190)
|||-..|.+ ++.+++.++++|++++.+.++++..+.+...+|+.|.. .+..+.+++.+++.
T Consensus 1 iLiANRGEI-----------AcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238|consen 1 ILIANRGEI-----------ACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred Ceeccccce-----------eehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhc
Confidence 577777775 78899999999999999999999999999999999862 24589999999999
Q ss_pred CCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--eeecC
Q 001014 718 RPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG--GIAKS 794 (1190)
Q Consensus 718 ~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~--~~~~s 794 (1190)
+..+|+|++|+. ++..+++.|+ +.| +.++||++.+|+-+.||...|++++++|+|+.++ ....+
T Consensus 70 gaqaihPGYGFLSEn~~Fae~c~----------~~G---i~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs 136 (670)
T KOG0238|consen 70 GAQAIHPGYGFLSENAEFAELCE----------DAG---ITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQS 136 (670)
T ss_pred CCceecCCccccccchHHHHHHH----------HcC---CeEECCCHHHHHHhcchHHHHHHHHhcCCccccCccccccc
Confidence 999999999988 7778999999 999 9999999999999999999999999999999665 57788
Q ss_pred HHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHH----hHhhCCCCcEEEEEecCCcceEEEeEEecCCCc
Q 001014 795 EADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLEN----AVEVDPERPVLIDKYLSDAIEIDVDALADSCGN 870 (1190)
Q Consensus 795 ~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~----~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~ 870 (1190)
.+++.+.++++||||++|++.|+||+||+++++++|+++.++. +...+++..+|+|+||+..++++|++++|++|+
T Consensus 137 ~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGn 216 (670)
T KOG0238|consen 137 DEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGN 216 (670)
T ss_pred HHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999999999999988875 455678889999999999999999999999999
Q ss_pred EEEEeeeeeeeccccccccccccc-----------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEE
Q 001014 871 VVIGGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLL 939 (1190)
Q Consensus 871 v~~~~i~e~~~~~g~~~gd~~~~~-----------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~vi 939 (1190)
.+ |.++..|++ |++.++++.+.++.+.|.++++++||.|...+||++|+.+.+||+
T Consensus 217 av-------------~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFm 283 (670)
T KOG0238|consen 217 AV-------------HLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFM 283 (670)
T ss_pred EE-------------EecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEE
Confidence 85 556677766 899999999999999999999999999999999999999999999
Q ss_pred EEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCc-cccCCeeEEeeccCCCccc----CCCcee--eCCcccc
Q 001014 940 EANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTK-EVIPKHVSVKEAVLPFEKF----QGCDVL--LGPEMRS 1012 (1190)
Q Consensus 940 EiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~-~~~~~~~~vk~~~~~~~~~----~~~~~~--lg~~~rs 1012 (1190)
|+|.|++-.+|.++..+|.||+++++|++.|++|+ +.+ +.....++.++.++..+.+ |++..+ +-++..+
T Consensus 284 EmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp---~~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~ 360 (670)
T KOG0238|consen 284 EMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLP---LKQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHS 360 (670)
T ss_pred EeeceeeecccchhhccchHHHHHHHHHhcCCCCC---CCcceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCC
Confidence 99999999999999999999999999999999997 222 4556778888888843333 222211 1111111
Q ss_pred ccee--eee--eCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHH
Q 001014 1013 TGEV--MGI--DMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLEL 1082 (1190)
Q Consensus 1013 ~G~v--~~~--g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~ 1082 (1190)
-+-= +|+ |+++ +.++ -|.-.+++ ++..|++.++...+...+ .|.|.+...+..||++
T Consensus 361 ~~vRvdtgV~~g~~v---------s~~Y-DpmiaKlv--vwg~dR~~Al~kl~~aL~-~~~I~Gv~tnI~~l~~ 421 (670)
T KOG0238|consen 361 PGVRVDTGVRSGDEV---------SIHY-DPMIAKLV--VWGKDREEALNKLKDALD-NYVIRGVPTNIDFLRD 421 (670)
T ss_pred CCeeeecCcccCCcc---------cccc-cchheeee--EecCCHHHHHHHHHHHHh-hcEEecCccchHHHHH
Confidence 1100 011 1111 1111 13333444 566677666666655555 5889998889999874
No 46
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=3.3e-38 Score=379.20 Aligned_cols=308 Identities=20% Similarity=0.296 Sum_probs=261.8
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC--------CcHHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p--------~~~e~v~~i 713 (1190)
..|||||+|+|.. ++.++++++++|++|++++++++..+.....+|+.|..+ .+.+.++++
T Consensus 3 ~~k~ili~~~g~~-----------~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~ 71 (445)
T PRK08462 3 EIKRILIANRGEI-----------ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISA 71 (445)
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHH
Confidence 4799999999996 889999999999999999888887777777899988652 347899999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG-- 790 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~-- 790 (1190)
|+++++|+|+|++|.. ....++..++ +.| ++++||+++++.+++||..++++|+++|||+|++.
T Consensus 72 ~~~~~~D~i~pg~g~lse~~~~a~~~e----------~~G---i~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~ 138 (445)
T PRK08462 72 AEIFEADAIFPGYGFLSENQNFVEICS----------HHN---IKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDG 138 (445)
T ss_pred HHHcCCCEEEECCCccccCHHHHHHHH----------HCC---CeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCccc
Confidence 9999999999998754 3345666777 899 99999999999999999999999999999999864
Q ss_pred eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHh----HhhCCCCcEEEEEecCCcceEEEeEEec
Q 001014 791 IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENA----VEVDPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 791 ~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~----~~~~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
.+.+.+++.++++++|||+||||..++||+|+.+|+|.+||.+++..+ ...+..+.+++|+||++++|++++++++
T Consensus 139 ~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~ 218 (445)
T PRK08462 139 ALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGD 218 (445)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEEC
Confidence 678999999999999999999999999999999999999999988753 2334456799999997789999999998
Q ss_pred CCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 867 SCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 867 ~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
.+|+++.++..+..... .+ .......|+..++++..+++.+.+.+++++||+.|.+++||+++.+|++||+|||||++
T Consensus 219 ~~g~~~~~g~~~~~~~~-~~-~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~ 296 (445)
T PRK08462 219 KHGNVIHVGERDCSLQR-RH-QKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQ 296 (445)
T ss_pred CCCCEEEEEecccccee-cc-cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcC
Confidence 88888766433211110 00 00111246667899999999999999999999999999999997678999999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCC
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
++.+++..++|+|++++++++++|+++++
T Consensus 297 ~~~~~~~~~~Gidl~~~~i~~a~G~~l~~ 325 (445)
T PRK08462 297 VEHTVSEMVSGLDLIEWMIKIAEGEELPS 325 (445)
T ss_pred cCcceehhhhCCCHHHHHHHHHCCCCccc
Confidence 98888788999999999999999999874
No 47
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=6.1e-39 Score=368.72 Aligned_cols=393 Identities=23% Similarity=0.370 Sum_probs=328.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-----C----CcHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-----P----LTVEDVLN 712 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-----p----~~~e~v~~ 712 (1190)
..+||||-..|.+ +..+-+++.++|++++.+.+..+..+.+...+|+.|.. | ++++++++
T Consensus 6 ~~~KvLVANRgEI-----------AIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~ 74 (1149)
T COG1038 6 KIKKVLVANRGEI-----------AIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIR 74 (1149)
T ss_pred hhheeeeeccchh-----------hHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHH
Confidence 4589999999886 88889999999999999999999999888789999972 3 66999999
Q ss_pred HhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--
Q 001014 713 VIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG-- 789 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~-- 789 (1190)
++++.+.|+|.|++|.. ++..+|.++. +.| +.++||.++.++.+.||.+.+..+.+.|+|+.+.
T Consensus 75 iAk~~gaDaIhPGYGfLSEn~efA~~c~----------eaG---I~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~ 141 (1149)
T COG1038 75 IAKRSGADAIHPGYGFLSENPEFARACA----------EAG---ITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD 141 (1149)
T ss_pred HHHHcCCCeecCCcccccCCHHHHHHHH----------HcC---CEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCC
Confidence 99999999999999988 7779999999 999 9999999999999999999999999999999554
Q ss_pred eeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHh----HhhCCCCcEEEEEecCCcceEEEeEEe
Q 001014 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENA----VEVDPERPVLIDKYLSDAIEIDVDALA 865 (1190)
Q Consensus 790 ~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~----~~~~~~~~vliEefI~~g~E~~v~v~~ 865 (1190)
..+++.+++.+++++.|||+++|.+.|+||+||++|.++++|.+.+.++ ...++++.++||+||+..++++|+++.
T Consensus 142 ~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLg 221 (1149)
T COG1038 142 GPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILG 221 (1149)
T ss_pred CCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEee
Confidence 4677899999999999999999999999999999999999999988864 566788999999999999999999999
Q ss_pred cCCCcEEEEeeeeeeeccccccccccccc-----------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCC
Q 001014 866 DSCGNVVIGGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSG 934 (1190)
Q Consensus 866 d~~G~v~~~~i~e~~~~~g~~~gd~~~~~-----------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g 934 (1190)
|.+|+++ |..+.+|++ |++.++++.+++|.+.+.++++..||.|...+||++|.+|
T Consensus 222 D~~Gnvv-------------HLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~ 288 (1149)
T COG1038 222 DTHGNVV-------------HLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDG 288 (1149)
T ss_pred cCCCCEE-------------EEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCC
Confidence 9999995 444566665 9999999999999999999999999999999999999889
Q ss_pred CEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCC--CCCCCcc--ccCCeeEEeeccC---CCcccCCCceeeC
Q 001014 935 DVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLN--DLGFTKE--VIPKHVSVKEAVL---PFEKFQGCDVLLG 1007 (1190)
Q Consensus 935 ~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~--~~~~~~~--~~~~~~~vk~~~~---~~~~~~~~~~~lg 1007 (1190)
++||||+|||.+-.+.+++..||+|++..++.++.|..|+ +++++++ .....+++.+.+. |.+.| -|--|
T Consensus 289 ~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F---~PDtG 365 (1149)
T COG1038 289 KFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGF---IPDTG 365 (1149)
T ss_pred cEEEEEecCceeeEEeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcccCC---CCCCc
Confidence 9999999999999999999999999999999999999998 7777653 4567889999987 44444 22222
Q ss_pred C--cccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceee--ecCCCChhHHHHHH-HHHHHCCCeeeeccccHHHHHH
Q 001014 1008 P--EMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFL--SLNDLTKPHLERIA-KAFLDIGFKIVSTSGTAHFLEL 1082 (1190)
Q Consensus 1008 ~--~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~--~~~~~~~~~~~~~~-~~~~~~g~~i~a~~gt~~~l~~ 1082 (1190)
+ ..||.| =.|+.-|-..++.-|... |.+.++++ +.+..+.+.....+ +.|.+ |+|.+.+.+..||..
T Consensus 366 rI~aYRs~g-GfGVRLD~Gn~~~GavIt-----pyyDslLVK~t~~~~t~e~a~~km~RaL~E--frIrGVkTNi~FL~~ 437 (1149)
T COG1038 366 RITAYRSAG-GFGVRLDGGNAYAGAVIT-----PYYDSLLVKVTCWGSTFEEAIRKMIRALRE--FRIRGVKTNIPFLEA 437 (1149)
T ss_pred eEEEEecCC-CceEEecCCcccccceec-----cccccceeeEeecCCCHHHHHHHHHHHHHH--heecceecCcHHHHH
Confidence 2 234433 123333444455444333 44455554 45566655555544 44544 888888888888763
No 48
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=7.5e-39 Score=373.17 Aligned_cols=340 Identities=16% Similarity=0.258 Sum_probs=271.9
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~d~Vi 723 (1190)
+|+|||+|+. +++++++++++|++|++++++|+.+... ++|+.+..+ .+.+.+.++++.. |.|.
T Consensus 1 ~igiiG~gql-----------~~~l~~aa~~lG~~v~~~d~~~~~p~~~--~ad~~~~~~~~d~~~i~~~a~~~--dvit 65 (352)
T TIGR01161 1 TVGILGGGQL-----------GRMLALAARPLGIKVHVLDPDANSPAVQ--VADHVVLAPFFDPAAIRELAESC--DVIT 65 (352)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEECCCCCCChhH--hCceeEeCCCCCHHHHHHHHhhC--CEEE
Confidence 4899999985 5666999999999999999998876653 688877533 4578888888754 5554
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHH
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAK 803 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~ 803 (1190)
..++. .+......++ +.| +++ .|+++++.+++||..++++|+++|||+|++..+.+.+++.++++
T Consensus 66 ~e~e~-i~~~~l~~l~----------~~g---~~~-~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~ 130 (352)
T TIGR01161 66 FEFEH-VDVEALEKLE----------ARG---VKL-FPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQ 130 (352)
T ss_pred eCcCc-CCHHHHHHHH----------hCC---CeE-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHH
Confidence 33322 2334456666 677 664 48999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeec
Q 001014 804 EIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQ 882 (1190)
Q Consensus 804 ~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~ 882 (1190)
++|||+|+||..++ +|+|+.++++.+|+.++++.. ...++++||||+++.|++|.++++.+|++.++++.++...
T Consensus 131 ~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~~~~~~ 206 (352)
T TIGR01161 131 ELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL----GDRECIVEEFVPFERELSVIVARSADGETAFYPVVENIHQ 206 (352)
T ss_pred HcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc----CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCcccEEe
Confidence 99999999999986 899999999999999988863 3458999999976899999999887889888888887765
Q ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHH
Q 001014 883 AGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAK 962 (1190)
Q Consensus 883 ~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~ 962 (1190)
.|... ....|+ .++++..+++++++++++++||++|++++||+++.+|++||+|+|||++++.+++..+++.|+++
T Consensus 207 ~g~~~---~~~~p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~ 282 (352)
T TIGR01161 207 DGILR---YVVAPA-AVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFE 282 (352)
T ss_pred CCEEE---EEECCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHH
Confidence 44332 122344 68888999999999999999999999999999977888999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCccccCCeeEEe----eccC-CCcccCCCceee-CC----cccccceeeeeeCC
Q 001014 963 YAALVMSGKSLNDLGFTKEVIPKHVSVK----EAVL-PFEKFQGCDVLL-GP----EMRSTGEVMGIDMS 1022 (1190)
Q Consensus 963 ~~~~~~lG~~l~~~~~~~~~~~~~~~vk----~~~~-~~~~~~~~~~~l-g~----~~rs~G~v~~~g~~ 1022 (1190)
.++++++|.+++...+.....+-.+.-+ .+.| .....++.+.|+ || +.|+||||+..|.|
T Consensus 283 ~~~ra~~g~~l~~~~~~~~~~m~n~~~~~~~~~~~~~~~~~~~~~~~~~y~k~~~~~~rk~Ghi~~~~~~ 352 (352)
T TIGR01161 283 QHLRAILGLPLGSTELLLPSVMVNLLGTEDDVIPLWEEILALPGAKLHWYGKAEVRPGRKVGHVNLVGSD 352 (352)
T ss_pred HHHHHHcCCCCCCccccCCEEEEEEecCccchHHHHHHHHhCCCCEEEECCCCCCCCCCcceEEEeecCC
Confidence 9999999999986543221111111111 1111 222358888888 87 46899999998864
No 49
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=2.5e-38 Score=373.66 Aligned_cols=358 Identities=18% Similarity=0.231 Sum_probs=281.1
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~d~Vi 723 (1190)
||||||+|+. +++++++++++|+++++++++|+.+... ++|+.+..+ .+.+.+.++++++++|+|+
T Consensus 1 kililG~g~~-----------~~~l~~aa~~~G~~v~~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~v~ 67 (380)
T TIGR01142 1 RVLLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVINMLDGDALRAVIEREKPDYIV 67 (380)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCCchhh--hCceEEEcCCCCHHHHHHHHHHhCCCEEE
Confidence 6999999995 6677999999999999999999877654 688877644 5789999999999999999
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHH-HHcCCCCCCceeecCHHHHHHHH
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAII-KELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l-~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
+.++.. .......++ +.| +++ .++++++.+++||..+++++ +++|||+|+|..+.+.+++.+++
T Consensus 68 ~~~e~v-~~~~~~~l~----------~~g---~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~ 132 (380)
T TIGR01142 68 PEIEAI-ATDALFELE----------KEG---YFV-VPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDELREAV 132 (380)
T ss_pred eccCcc-CHHHHHHHH----------hcC---Cee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHH
Confidence 887754 223344566 778 764 47999999999999999985 89999999999999999999999
Q ss_pred HHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC--CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 803 KEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD--PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 803 ~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+++|||+|+||..++||+|+.+|+|.+||..+++.+.... ...+++||+||+++.|+++.++++.+|++.+....++.
T Consensus 133 ~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~~~~ 212 (380)
T TIGR01142 133 EKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPIGHR 212 (380)
T ss_pred HHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcceE
Confidence 9999999999999999999999999999999998865422 24579999999667899999998767776665555554
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCH
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPL 960 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l 960 (1190)
...+. ....+.|..++++..+++.+++++++++||+.|++++||++ +++++||+|||||++++.......+|+|+
T Consensus 213 ~~~~~----~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~-~~~~~~viEinpR~~~~~~~~~~~~g~~~ 287 (380)
T TIGR01142 213 QIDGD----YHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFV-KGDEVIFSEVSPRPHDTGMVTLISQGLSE 287 (380)
T ss_pred EeCCe----eEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE-ECCcEEEEEeecCCCCCceEEeeecCCCH
Confidence 33222 11223344699999999999999999999999999999999 46689999999999998666555679999
Q ss_pred HHHHHHHHcCCCCCCCCCCccccCCeeEEee----ccC-C---CcccCCCceee-CC----cccccceeeeeeCCHHHHH
Q 001014 961 AKYAALVMSGKSLNDLGFTKEVIPKHVSVKE----AVL-P---FEKFQGCDVLL-GP----EMRSTGEVMGIDMSFPIAF 1027 (1190)
Q Consensus 961 ~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~----~~~-~---~~~~~~~~~~l-g~----~~rs~G~v~~~g~~~~eA~ 1027 (1190)
+++++++++|.+++............+.-.. ... . ....+++..++ ++ ..+++|||+..|+|.++|.
T Consensus 288 ~~~~~r~~~G~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~G~v~~~~~s~~~~~ 367 (380)
T TIGR01142 288 FALHVRAILGLPIPGIPQLGPAASAVIKAKVTGYSPAFRGLEKALSVPNTQVRLFGKPEAYVGRRLGVALATAKSVEAAR 367 (380)
T ss_pred HHHHHHHHcCCCCCCccccCCceEEEEEcccccccchhhHHHHHHcCCCCEEEECCCCcCCCCCcCEEEEEecCCHHHHH
Confidence 9999999999998854321110000000000 000 0 11225666666 54 3578999999999999999
Q ss_pred HHHHHHcC
Q 001014 1028 AKAQIAAG 1035 (1190)
Q Consensus 1028 ~ka~~~~~ 1035 (1190)
.++..+..
T Consensus 368 ~~~~~~~~ 375 (380)
T TIGR01142 368 ERAEEVAH 375 (380)
T ss_pred HHHHHHHh
Confidence 99987654
No 50
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=8.3e-38 Score=371.16 Aligned_cols=361 Identities=20% Similarity=0.258 Sum_probs=282.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-CCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-PLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-p~~~e~v~~i~~~~~~d 720 (1190)
.+++|||||+|+. +.+.+++++++|+++++++.+|+.++.. ++|..+.. ..+.+.+.++++++++|
T Consensus 11 ~~~~ilIiG~g~~-----------~~~~~~a~~~~G~~v~~~~~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id 77 (395)
T PRK09288 11 SATRVMLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSHVIDMLDGDALRAVIEREKPD 77 (395)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCCchHH--hhhheEECCCCCHHHHHHHHHHhCCC
Confidence 5579999999974 5566899999999999999999876554 57776654 46789999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHH-HHcCCCCCCceeecCHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAII-KELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l-~~~gIp~p~~~~~~s~~e~~ 799 (1190)
+|++..+.... ..+..++ +.| +++. |+++++.+++||..+|+++ +++|||+|++..+++.+++.
T Consensus 78 ~vi~~~e~~~~-~~~~~l~----------~~g---~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~ 142 (395)
T PRK09288 78 YIVPEIEAIAT-DALVELE----------KEG---FNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELR 142 (395)
T ss_pred EEEEeeCcCCH-HHHHHHH----------hcC---CeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHH
Confidence 99987765322 3344555 668 7654 8999999999999999999 48999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCC--CCcEEEEEecCCcceEEEeEEecCCCcEEEEeee
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDP--ERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIM 877 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~--~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~ 877 (1190)
++++++|||+|+||..+.+|+|+.+|+|.+|+.++++.+..... ..++||||||+.+.|+++.++++.+|...++...
T Consensus 143 ~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~ 222 (395)
T PRK09288 143 AAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPI 222 (395)
T ss_pred HHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCc
Confidence 99999999999999999999999999999999999988654322 3579999999768999999999866566666655
Q ss_pred eeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccC
Q 001014 878 EHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIG 957 (1190)
Q Consensus 878 e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G 957 (1190)
++.... |+....+.|..++++..+++++++++++++||+.|++++||++ +++++||||+|||++++.......+|
T Consensus 223 ~~~~~~----~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~-~~~~~~viEinpR~~~~~~~~~~~~g 297 (395)
T PRK09288 223 GHRQED----GDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFV-KGDEVYFSEVSPRPHDTGMVTLISQN 297 (395)
T ss_pred ccEEEC----CEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEE-eCCeEEEEEecCCCCCCcceeeeecc
Confidence 555432 2333334444789999999999999999999999999999999 45589999999999998655444559
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCccccCCeeEEee-------ccC-CCcccCCCceee-CC----cccccceeeeeeCCHH
Q 001014 958 HPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKE-------AVL-PFEKFQGCDVLL-GP----EMRSTGEVMGIDMSFP 1024 (1190)
Q Consensus 958 ~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~-------~~~-~~~~~~~~~~~l-g~----~~rs~G~v~~~g~~~~ 1024 (1190)
+|+++++++.++|.+++++..........+.... .-+ .....+|+..++ |+ ..+.+|+|++.|+|.+
T Consensus 298 ~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~k~~~~~~~~lG~v~~~g~~~~ 377 (395)
T PRK09288 298 LSEFELHARAILGLPIPDIRLYSPAASAVILAEGESANPSFDGLAEALAVPGTDVRLFGKPEIRGGRRMGVALATGEDVE 377 (395)
T ss_pred cCHHHHHHHHHcCCCCCcccccCCceeEEEeccccccccchhhHHHHhcCCCCEEEEecCCCCCCCCeeEEEEeecCCHH
Confidence 9999999999999988654321111000000000 000 111346665545 54 4588999999999999
Q ss_pred HHHHHHHHHcC
Q 001014 1025 IAFAKAQIAAG 1035 (1190)
Q Consensus 1025 eA~~ka~~~~~ 1035 (1190)
+|..++..+..
T Consensus 378 ~a~~~~~~~~~ 388 (395)
T PRK09288 378 EAREKAKEAAS 388 (395)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 51
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.1e-37 Score=373.72 Aligned_cols=366 Identities=19% Similarity=0.260 Sum_probs=282.6
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC--------CcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p--------~~~e~v~~i~ 714 (1190)
.|||||||+|+. +++++++++++|+++++++++++..+.....+|+.|..| .+.+.+++++
T Consensus 2 ~~~ililg~g~~-----------~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~ 70 (450)
T PRK06111 2 FQKVLIANRGEI-----------AVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIA 70 (450)
T ss_pred cceEEEECCcHH-----------HHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 489999999996 788899999999999999998888777766789888631 3678999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--ee
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG--GI 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~--~~ 791 (1190)
+++++|+|++.++.. ....++..++ ..| ++++|++++++.+++||..++++|+++|||+|++ ..
T Consensus 71 ~~~~id~I~p~~~~~~e~~~~~~~~~----------~~g---~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~ 137 (450)
T PRK06111 71 KKTGAEAIHPGYGLLSENASFAERCK----------EEG---IVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTN 137 (450)
T ss_pred HHhCCCEEEeCCCccccCHHHHHHHH----------HCC---CeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcC
Confidence 999999999876532 2224667777 889 9999999999999999999999999999999986 56
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhH----hhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAV----EVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++.++||+||||..++||+|+.+|++.+|+.++++.+. ......+++||+||++++|+++++++++
T Consensus 138 ~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~ 217 (450)
T PRK06111 138 LEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADT 217 (450)
T ss_pred cCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcC
Confidence 689999999999999999999999999999999999999999988642 2234568999999966689999999988
Q ss_pred CCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 868 CGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
+|+++.+...+.... ..|. ......|++.++++..+++++++.+++++||+.|++++||+++.+|++||+|||||+++
T Consensus 218 ~g~~~~~~~~~~~~~-~~~~-~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~ 295 (450)
T PRK06111 218 HGNTVYLWERECSVQ-RRHQ-KVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQV 295 (450)
T ss_pred CCCEEEEEeeccccc-cccc-ceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCC
Confidence 788766543321100 0010 01111255568888999999999999999999999999999976667999999999999
Q ss_pred ChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCc---------c-----c---CCCce--e--e
Q 001014 948 TVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFE---------K-----F---QGCDV--L--L 1006 (1190)
Q Consensus 948 s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~---------~-----~---~~~~~--~--l 1006 (1190)
+.+++..++|+|++++++++++|++++...- .......++...+.+.. . . ++... . .
T Consensus 296 ~~~~~~~~~Gvd~~~~~i~~~~G~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~p~~G~~~~i~~~~~~~~~~~~~~~~ 373 (450)
T PRK06111 296 EHPVTEEITGIDLVEQQLRIAAGEKLSFTQD--DIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTLPGGEGVRHDHAVEN 373 (450)
T ss_pred cchhhHHHhCcCHHHHHHHHhcCCCCCCccc--cCCcCceEEEEEEecCCCCCcccCCCeeCeEecCCCCCEEEEecccC
Confidence 9999999999999999999999998863210 00111112211111100 0 0 01100 0 0
Q ss_pred CCcc-----cccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1007 GPEM-----RSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1007 g~~~-----rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
|... ...|.|++.|.|.++|..++..+...
T Consensus 374 G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~ 408 (450)
T PRK06111 374 GVTVTPFYDPMIAKLIAHGETREEAISRLHDALEE 408 (450)
T ss_pred CCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHh
Confidence 2111 12489999999999999999888654
No 52
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=5e-37 Score=364.52 Aligned_cols=364 Identities=19% Similarity=0.308 Sum_probs=279.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-CCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-PMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p~~~~~v~~i~~~~~~d 169 (1190)
..++|||||+|+. +++++++++++|++|++++.++..+. ..++|..+.. ..|.+.+.++++++++|
T Consensus 11 ~~~~ilIiG~g~~-----------~~~~~~a~~~~G~~v~~~~~~~~~~~--~~~ad~~~~~~~~d~~~l~~~~~~~~id 77 (395)
T PRK09288 11 SATRVMLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAPA--MQVAHRSHVIDMLDGDALRAVIEREKPD 77 (395)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCCch--HHhhhheEECCCCCHHHHHHHHHHhCCC
Confidence 3469999999954 67899999999999999999887655 3467776654 46888999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAM-KTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l-~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
+|++..+... .... ..+++.|+++. ++++++.+++||..+|+++ +++|+|+|++..+++.+++.+++++++
T Consensus 78 ~vi~~~e~~~-~~~~------~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g 149 (395)
T PRK09288 78 YIVPEIEAIA-TDAL------VELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIG 149 (395)
T ss_pred EEEEeeCcCC-HHHH------HHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcC
Confidence 9999877421 1111 23555687765 8999999999999999999 489999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCC--CCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCC
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASL--TSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPM 326 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~--~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~ 326 (1190)
||+|+||..+++|+|+.+|+|.+|+.++++.+...+. ..++||||||++..|+++.++++.+|...++...++...
T Consensus 150 -~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~~~~~- 227 (395)
T PRK09288 150 -YPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGHRQE- 227 (395)
T ss_pred -CCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcccEEE-
Confidence 9999999999999999999999999999988764332 358999999994489999999987655555544433321
Q ss_pred CcccccEE-EEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCH
Q 001014 327 GVHTGDSI-TVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPI 405 (1190)
Q Consensus 327 g~~~g~~~-~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l 405 (1190)
.++.. ...|+. ++++..+++++++.+++++||+ +|++|+||+++. +++||||+|||++++.......+|+|+
T Consensus 228 ---~~~~~~~~~p~~-l~~~~~~~i~~~~~~~~~~L~~-~G~~~ve~~~~~--~~~~viEinpR~~~~~~~~~~~~g~~~ 300 (395)
T PRK09288 228 ---DGDYRESWQPQP-MSPAALEEAQEIAKKVTDALGG-RGLFGVELFVKG--DEVYFSEVSPRPHDTGMVTLISQNLSE 300 (395)
T ss_pred ---CCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCC-eeEEEEEEEEeC--CeEEEEEecCCCCCCcceeeeecccCH
Confidence 13322 245775 9999999999999999999998 499999999984 489999999999998655444559999
Q ss_pred HHHHHHHHcCCCCCCCCccccCCCCccccCCcCeEE---------eeeceeeecccCCCCcccCCCCCcEEEEEEEeCCH
Q 001014 406 AKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVV---------TKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTF 476 (1190)
Q Consensus 406 ~~~~~~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~---------~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~ 476 (1190)
++++++.++|++++++...-.+ ....+.+..++.. ...|.|.++.+.... .+..+.+|+|++.|.|.
T Consensus 301 ~~~~~~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~k~~---~~~~~~lG~v~~~g~~~ 376 (395)
T PRK09288 301 FELHARAILGLPIPDIRLYSPA-ASAVILAEGESANPSFDGLAEALAVPGTDVRLFGKPE---IRGGRRMGVALATGEDV 376 (395)
T ss_pred HHHHHHHHcCCCCCcccccCCc-eeEEEeccccccccchhhHHHHhcCCCCEEEEecCCC---CCCCCeeEEEEeecCCH
Confidence 9999999999988554321111 1111222221111 123445444443221 23345679999999999
Q ss_pred HHHHHHHHHhhh
Q 001014 477 QESFQKALRSLE 488 (1190)
Q Consensus 477 ~ea~~ka~~~l~ 488 (1190)
++|.+++.++++
T Consensus 377 ~~a~~~~~~~~~ 388 (395)
T PRK09288 377 EEAREKAKEAAS 388 (395)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 53
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=1.4e-37 Score=362.57 Aligned_cols=345 Identities=21% Similarity=0.280 Sum_probs=277.3
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCCEEE
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d~Vi 172 (1190)
+|+|||+|++ +++++.+++++|++|+++++++++++ ..++|+.++.+ .|.+.+.++++ .+|+|.
T Consensus 1 ~igiiG~gql-----------~~~l~~aa~~lG~~v~~~d~~~~~p~--~~~ad~~~~~~~~d~~~i~~~a~--~~dvit 65 (352)
T TIGR01161 1 TVGILGGGQL-----------GRMLALAARPLGIKVHVLDPDANSPA--VQVADHVVLAPFFDPAAIRELAE--SCDVIT 65 (352)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEECCCCCCCh--hHhCceeEeCCCCCHHHHHHHHh--hCCEEE
Confidence 4899999965 78999999999999999999988766 57788888655 47788888887 578876
Q ss_pred ecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcE
Q 001014 173 PTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPL 252 (1190)
Q Consensus 173 p~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~Pv 252 (1190)
+.++.- .... ...+++.|+++ +|+++++++++||..+|++|+++|+|+|++..+++.+++.++++++| ||+
T Consensus 66 ~e~e~i-~~~~------l~~l~~~g~~~-~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g-~P~ 136 (352)
T TIGR01161 66 FEFEHV-DVEA------LEKLEARGVKL-FPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELG-FPV 136 (352)
T ss_pred eCcCcC-CHHH------HHHHHhCCCeE-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcC-CCE
Confidence 554421 1111 22466677764 59999999999999999999999999999999999999999999999 999
Q ss_pred EEecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccc
Q 001014 253 IIRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTG 331 (1190)
Q Consensus 253 VVKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g 331 (1190)
|+||..++ +|+|+.++++.+|+.++++... ..++||||||+|.+|+++.++++.+|+..+++..++....+..
T Consensus 137 vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~~~~~~~g~~-- 210 (352)
T TIGR01161 137 VLKARTGGYDGRGQYRIRNEADLPQAAKELG----DRECIVEEFVPFERELSVIVARSADGETAFYPVVENIHQDGIL-- 210 (352)
T ss_pred EEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCcccEEeCCEE--
Confidence 99999875 8999999999999999887742 3489999999955999999998888888777666655433322
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 001014 332 DSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAK 411 (1190)
Q Consensus 332 ~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~ 411 (1190)
.....|+. ++++..+++++++.+++++||+. |++++||++++ +|++||+|||||++++.+++..+++.++++++++
T Consensus 211 -~~~~~p~~-~~~~~~~~~~~~a~~i~~~l~~~-G~~~ve~~~~~-dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~r 286 (352)
T TIGR01161 211 -RYVVAPAA-VPDAIQARAEEIARRLMEELGYV-GVLAVEMFVLP-DGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLR 286 (352)
T ss_pred -EEEECCCC-CCHHHHHHHHHHHHHHHHHcCce-eEEEEEEEEeC-CCcEEEEEecCCCCCcCcCchhhccccHHHHHHH
Confidence 23456886 99999999999999999999995 99999999997 6789999999999999889999999999999999
Q ss_pred HHcCCCCCCCCccccCCCCccccC---CcCe--EEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCC
Q 001014 412 LSVGYSLDQIPNDITKKTPASFEP---SIDY--VVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRT 475 (1190)
Q Consensus 412 ~alG~~l~~~~~~i~~~~~~~f~p---~~~~--v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~ 475 (1190)
+++|++++..............-. .... ...+.|.|.++.|.....+.+++| |||...|.+
T Consensus 287 a~~g~~l~~~~~~~~~~m~n~~~~~~~~~~~~~~~~~~~~~~~~~y~k~~~~~~rk~---Ghi~~~~~~ 352 (352)
T TIGR01161 287 AILGLPLGSTELLLPSVMVNLLGTEDDVIPLWEEILALPGAKLHWYGKAEVRPGRKV---GHVNLVGSD 352 (352)
T ss_pred HHcCCCCCCccccCCEEEEEEecCccchHHHHHHHHhCCCCEEEECCCCCCCCCCcc---eEEEeecCC
Confidence 999999987533221100000000 0011 112569999999988777888888 999998864
No 54
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=324.56 Aligned_cols=360 Identities=19% Similarity=0.275 Sum_probs=298.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceee-cCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYF-EPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~-~p~~~e~v~~i~~~~~~d 720 (1190)
...|||+||||. +|+.+ +-+++++|.+||.+|..++.++.. ++++.|. .-++.+.+..++++++||
T Consensus 11 ~a~kvmLLGSGE--LGKEv---------aIe~QRLG~eViAVDrY~~APAmq--VAhrs~Vi~MlD~~al~avv~rekPd 77 (394)
T COG0027 11 QATKVMLLGSGE--LGKEV---------AIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVIDMLDGDALRAVVEREKPD 77 (394)
T ss_pred CCeEEEEecCCc--cchHH---------HHHHHhcCCEEEEecCcCCChhhh--hhhheeeeeccCHHHHHHHHHhhCCC
Confidence 346799999999 55544 889999999999999999888766 6887776 457899999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHH-HHcCCCCCCceeecCHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAII-KELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l-~~~gIp~p~~~~~~s~~e~~ 799 (1190)
.|+|..+.... .....++ +.| +.++ |...+..+++||...|+++ +++|+|+.+|+.+.+.+++.
T Consensus 78 ~IVpEiEAI~t-d~L~elE----------~~G---~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~ 142 (394)
T COG0027 78 YIVPEIEAIAT-DALVELE----------EEG---YTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELR 142 (394)
T ss_pred eeeehhhhhhH-HHHHHHH----------hCC---ceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHH
Confidence 99987764422 3445566 888 7755 8999999999999999985 57999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC--CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeee
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD--PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIM 877 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~ 877 (1190)
++++.+||||+|||..+++|+|-.+++++++++.+++.+.... ....+++|+||+...|+++-.++.-+|.-.++...
T Consensus 143 ~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PI 222 (394)
T COG0027 143 AAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPI 222 (394)
T ss_pred HHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCc
Confidence 9999999999999999999999999999999999999876443 34679999999999999999998655554355555
Q ss_pred eeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccC
Q 001014 878 EHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIG 957 (1190)
Q Consensus 878 e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G 957 (1190)
.|.+. .||...+|.|+.+++...++.+.+++++.++||-.|+|++|+|+ ..+++||.|+.||++++...+-...+
T Consensus 223 GHrq~----dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv-~gDeV~FsEVSPRPHDTGmVTLiSq~ 297 (394)
T COG0027 223 GHRQE----DGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFV-KGDEVIFSEVSPRPHDTGMVTLISQD 297 (394)
T ss_pred ccccC----CCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEE-eCCEEEEeecCCCCCCCceEEEEecc
Confidence 66644 46777889999999999999999999999999999999999999 88999999999999999777677779
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCccccCCeeEEee----ccCCCc------ccCCCceee-CC----cccccceeeeeeCC
Q 001014 958 HPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKE----AVLPFE------KFQGCDVLL-GP----EMRSTGEVMGIDMS 1022 (1190)
Q Consensus 958 ~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~----~~~~~~------~~~~~~~~l-g~----~~rs~G~v~~~g~~ 1022 (1190)
+|-+++++|+++|.|++++........ .+++. ...+|. ..|+.+..| || ..|.+|-.++.+++
T Consensus 298 lsEF~LH~RAiLGLPi~~i~~~~P~AS--~vI~~~~~~~~~~f~~l~~AL~~p~t~vRlFGKP~~~~~RRmGVALA~a~~ 375 (394)
T COG0027 298 LSEFALHVRAILGLPIPEIRQISPAAS--AVILAQETSQAPTFDGLAEALGVPDTQVRLFGKPEADGGRRLGVALATAES 375 (394)
T ss_pred chHHHHHHHHHhCCCccceeeeccccc--ceeeccccccCCchhhHHHHhcCCCceEEEecCCcccCCceeeEEEecCcc
Confidence 999999999999999997643221100 01111 111222 247788877 87 45889999999999
Q ss_pred HHHHHHHHHHHcCC
Q 001014 1023 FPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1023 ~~eA~~ka~~~~~~ 1036 (1190)
.++|..||..+++.
T Consensus 376 Ve~Are~A~~aa~~ 389 (394)
T COG0027 376 VEEARERARKAASA 389 (394)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 55
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=5.5e-37 Score=354.38 Aligned_cols=364 Identities=21% Similarity=0.284 Sum_probs=293.2
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC--------CcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p--------~~~e~v~~i~ 714 (1190)
.+||||...|.+ ++.++++++++|++++.+.+.++..+.....+|+.+... ++++.++..+
T Consensus 2 ~~kiLIanrGei-----------a~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a 70 (449)
T COG0439 2 FKKILIANRGEI-----------AVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAA 70 (449)
T ss_pred CceEEEecCchh-----------HHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHH
Confidence 479999999885 888999999999999999999998887777899888743 5688999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--e
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG--I 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~--~ 791 (1190)
+..+.|+|++.+|.. .+..++..++ +.| +.++||++++++.+.||..++++++++|+|+|++. .
T Consensus 71 ~~~gadai~pGygflsen~~fae~~~----------~~g---l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~ 137 (449)
T COG0439 71 EETGADAIHPGYGFLSENAAFAEACA----------EAG---LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGA 137 (449)
T ss_pred HhcCCceEcccchhhhCCHHHHHHHH----------HcC---CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCC
Confidence 999999999999965 5557888888 999 99999999999999999999999999999999985 3
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhH----hhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAV----EVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~----~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.+.++++||||||||+.|+||+||++|++.+||.+++..+. ..+.+..+++|+||+..+.+.++++.|+
T Consensus 138 ~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~ 217 (449)
T COG0439 138 VADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDG 217 (449)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcC
Confidence 577899999999999999999999999999999999999999998753 3345666999999988889999999999
Q ss_pred CCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 868 CGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 868 ~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
+|+++-.+-.+ .+++ ....-....|++.++++.++++.+.+.+.++.+||.|..++||+++.+|++||+|+|||++
T Consensus 218 ~g~~i~l~eRdcsiqr---r~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlq 294 (449)
T COG0439 218 HGNVIHLGERDCSIQR---RHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQ 294 (449)
T ss_pred cccEEEEEeccCCCcC---CccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccc
Confidence 98886544332 1111 1111222237778999999999999999999999999999999996579999999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC------CCcccCCCceee-CC-----------
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL------PFEKFQGCDVLL-GP----------- 1008 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~------~~~~~~~~~~~l-g~----------- 1008 (1190)
+.++.+..++|+|+.+.++++++|+++.-.. .+......++++++. .|.+.||.-... .|
T Consensus 295 veh~vte~vtGiDlv~~qi~ia~ge~l~~~q--~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~ 372 (449)
T COG0439 295 VEHPVTEMVTGIDLVKEQIRIAAGEPLSLKQ--EDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGV 372 (449)
T ss_pred cCccceehhhhhhHHHHHHHHHcCCCCCCCC--CcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeec
Confidence 9999999999999999999999998776321 112222334444433 233333322111 11
Q ss_pred --------ccc-ccceeeeeeCCHHHHHHHHHHHcC
Q 001014 1009 --------EMR-STGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1009 --------~~r-s~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
... ..|++.+.|.+.++|+.+...+..
T Consensus 373 ~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~ 408 (449)
T COG0439 373 YDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALD 408 (449)
T ss_pred ccCcccCcchhhheeEEEEecCChHHHHHHHHHHHH
Confidence 111 256788888888888888777643
No 56
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.5e-37 Score=349.54 Aligned_cols=432 Identities=24% Similarity=0.363 Sum_probs=354.7
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-----C----CcHHHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-----P----LTVEDVLNV 713 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-----p----~~~e~v~~i 713 (1190)
++||||...|.+ +..+-+++.++|.+++.+.+..+..+.+..-+|+.|.. | +.+++++++
T Consensus 33 ~~kvlVANRgEI-----------aIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~i 101 (1176)
T KOG0369|consen 33 KNKVLVANRGEI-----------AIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISI 101 (1176)
T ss_pred hceeEEecCCcc-----------hhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHH
Confidence 469999999886 67788999999999999999999999888889999862 2 558999999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc--e
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG--G 790 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~--~ 790 (1190)
++++++|+|.|++|+. +...+|+.+. +.| +.++||+++.++.+.||...|.+.-++|+|+.++ .
T Consensus 102 ak~~~vdavHPGYGFLSErsdFA~av~----------~AG---i~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpg 168 (1176)
T KOG0369|consen 102 AKKHNVDAVHPGYGFLSERSDFAQAVQ----------DAG---IRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPG 168 (1176)
T ss_pred HHHcCCCeecCCccccccchHHHHHHH----------hcC---ceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCC
Confidence 9999999999999987 5668899998 999 9999999999999999999999999999999555 6
Q ss_pred eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHh----HhhCCCCcEEEEEecCCcceEEEeEEec
Q 001014 791 IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENA----VEVDPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 791 ~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~----~~~~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
.+++.+|+.+|+++.|+|+|+|..+|+||+||++|++.+++++.++++ ...++++.++||+|++..++++|+.+.|
T Consensus 169 Pitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD 248 (1176)
T KOG0369|consen 169 PITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGD 248 (1176)
T ss_pred CcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecc
Confidence 789999999999999999999999999999999999999999998864 5667899999999999999999999999
Q ss_pred CCCcEEEEeeeeeeeccccccccccccc-----------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCC
Q 001014 867 SCGNVVIGGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGD 935 (1190)
Q Consensus 867 ~~G~v~~~~i~e~~~~~g~~~gd~~~~~-----------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~ 935 (1190)
..|+++ |..+.+|+. |+..+++++.+++..-+.++++..||.....+||++|..|+
T Consensus 249 ~~GNvv-------------HLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~ 315 (1176)
T KOG0369|consen 249 KHGNVV-------------HLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGR 315 (1176)
T ss_pred cCCCEE-------------EEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCC
Confidence 999986 333344544 89999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCcc-ccCCeeEEeeccCCCcccCCCceeeCC-ccccc
Q 001014 936 VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKE-VIPKHVSVKEAVLPFEKFQGCDVLLGP-EMRST 1013 (1190)
Q Consensus 936 ~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~-~~~~~~~vk~~~~~~~~~~~~~~~lg~-~~rs~ 1013 (1190)
.|+||+|||++-.+..++..+|+|++...++++.|..|+++++.++ .....+++.+.+.-.+.-.+..+-.|. |....
T Consensus 316 hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRS 395 (1176)
T KOG0369|consen 316 HYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRS 395 (1176)
T ss_pred EEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999998874 456788999999844444444444444 45556
Q ss_pred ceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeec--CCCCh-hHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEE-
Q 001014 1014 GEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSL--NDLTK-PHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVER- 1089 (1190)
Q Consensus 1014 G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~--~~~~~-~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~- 1089 (1190)
|+-||+.-|-..|++.|..+ |.+.++++.+ .+.+- -...++++.|.+ |+|.+.+.+..||...--+..-
T Consensus 396 geGmGiRLD~asafaGavIs-----PhYDSllVK~i~h~~~~~~~a~KMiRaL~e--FRiRGVKTNIpFllnvL~n~~Fl 468 (1176)
T KOG0369|consen 396 GEGMGIRLDGASAFAGAVIS-----PHYDSLLVKVICHGSTYEIAARKMIRALIE--FRIRGVKTNIPFLLNVLTNPVFL 468 (1176)
T ss_pred CCCceEeecCcccccccccc-----ccccceEEEEEecCCccHHHHHHHHHHHHH--HhhcceecCcHHHHHHhcCccee
Confidence 88899998888888766544 5556666532 23343 355566677766 8899988888888643222221
Q ss_pred ----EecccCCCCcHHhH---------HHcCcEEEEEEcCCC
Q 001014 1090 ----VLKMHEGRPHAGDM---------VANGQIQMMVITSSG 1118 (1190)
Q Consensus 1090 ----v~~~~e~~~~~~~~---------i~~~~i~lvint~~~ 1118 (1190)
....-+++|+++++ |-+.==|+.+|-|+.
T Consensus 469 ~g~~~T~FIDe~PeLFq~~psqNRAQKLL~Ylg~v~VNGpst 510 (1176)
T KOG0369|consen 469 EGTVDTTFIDETPELFQLKPSQNRAQKLLHYLGDVAVNGPST 510 (1176)
T ss_pred eeeeeeEEecCChHHhccccchhHHHHHHHHHHHhhccCCCC
Confidence 12222445554433 333334677777653
No 57
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=6.3e-37 Score=392.19 Aligned_cols=323 Identities=20% Similarity=0.342 Sum_probs=275.5
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-----------CcHHHHHHH
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-----------LTVEDVLNV 713 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-----------~~~e~v~~i 713 (1190)
||||.+.|.+ ++.++++++++|+++++++++++..+.+...+|+.|..+ ++.+.++++
T Consensus 1 ~~lianrgei-----------a~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~i 69 (1143)
T TIGR01235 1 KILVANRGEI-----------AIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRV 69 (1143)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHH
Confidence 6899998886 888999999999999999999999888878999998642 357999999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG-- 790 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~-- 790 (1190)
|+++++|+|+|++|.. ....++..++ +.| ++++||++++++++.||..++++++++|||+|++.
T Consensus 70 ak~~~iDaI~PGyGflsE~~~~a~~le----------~~G---i~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~ 136 (1143)
T TIGR01235 70 AKLNGVDAIHPGYGFLSENSEFADACN----------KAG---IIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDG 136 (1143)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHH----------HcC---CcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCccc
Confidence 9999999999988765 3446777788 889 99999999999999999999999999999999974
Q ss_pred eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEec
Q 001014 791 IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 791 ~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
.+.+.+++.++++++|||+||||+.++||+||++|++.+||+++++.+.. .++...++||+||++++|++|++++|
T Consensus 137 ~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD 216 (1143)
T TIGR01235 137 PPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGD 216 (1143)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEe
Confidence 57899999999999999999999999999999999999999999887542 24557899999997789999999999
Q ss_pred CCCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCC
Q 001014 867 SCGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 867 ~~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
++|+++...-.+ .+.+ .|. ......|+..++++..+++.+.+.++++++||.|+++|||++|.+|++||||||||+
T Consensus 217 ~~G~vv~l~eRdcsvqr--r~q-k~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRi 293 (1143)
T TIGR01235 217 KHGNVVHLFERDCSVQR--RHQ-KVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRI 293 (1143)
T ss_pred CCCCEEEEEeccccccc--cCc-eEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCC
Confidence 888876432111 0111 010 112224766899999999999999999999999999999999877899999999999
Q ss_pred CCChhhhhcccCCCHHHHHHHHHcCCCCC--CCCCCc--cccCCeeEEeeccC
Q 001014 946 SRTVPFVSKAIGHPLAKYAALVMSGKSLN--DLGFTK--EVIPKHVSVKEAVL 994 (1190)
Q Consensus 946 ~~s~~~~~~~~G~~l~~~~~~~~lG~~l~--~~~~~~--~~~~~~~~vk~~~~ 994 (1190)
++++++++.++|+|+++.+++++.|.+++ ++++.. ......+++++++.
T Consensus 294 qveh~vTe~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~ 346 (1143)
T TIGR01235 294 QVEHTVTEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVT 346 (1143)
T ss_pred CcchhHHHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEe
Confidence 99999999999999999999999999999 444422 34567789998887
No 58
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=329.69 Aligned_cols=353 Identities=22% Similarity=0.293 Sum_probs=295.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d~V 171 (1190)
++|+|||||++ |++++.+++++|++++++++++++++ .+.+|....... |.+.+.++++ ++|+|
T Consensus 2 ~tvgIlGGGQL-----------grMm~~aa~~lG~~v~vLdp~~~~PA--~~va~~~i~~~~dD~~al~ela~--~~DVi 66 (375)
T COG0026 2 KTVGILGGGQL-----------GRMMALAAARLGIKVIVLDPDADAPA--AQVADRVIVAAYDDPEALRELAA--KCDVI 66 (375)
T ss_pred CeEEEEcCcHH-----------HHHHHHHHHhcCCEEEEecCCCCCch--hhcccceeecCCCCHHHHHHHHh--hCCEE
Confidence 58999999987 89999999999999999999999887 678888876665 5778888887 79999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
...++-... -++ ..++.. +++. |+++++++.+||...|++|+++|+|+|+|..+.+.+++..+.+++| +|
T Consensus 67 T~EfE~V~~--~aL-----~~l~~~-~~v~-p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g-~p 136 (375)
T COG0026 67 TYEFENVPA--EAL-----EKLAAS-VKVF-PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLG-FP 136 (375)
T ss_pred EEeeccCCH--HHH-----HHHHhh-cCcC-CCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC-Cc
Confidence 766653222 111 123333 4444 8999999999999999999999999999999999999999999999 99
Q ss_pred EEEecC-CCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCccc
Q 001014 252 LIIRPA-FTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330 (1190)
Q Consensus 252 vVVKP~-~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~ 330 (1190)
+|+|.+ .|+.|+|.+++++.+++.......... ...++|+|++..+|+|+.+.|+.+|++.+++..|+++..|+-
T Consensus 137 ~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~~---~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl- 212 (375)
T COG0026 137 AVLKTRRGGYDGKGQWRIRSDADLELRAAGLAEG---GVPVLEEFVPFEREISVIVARSNDGEVAFYPVAENVHRNGIL- 212 (375)
T ss_pred eEEEeccccccCCCeEEeeCcccchhhHhhhhcc---CceeEEeecccceEEEEEEEEcCCCCEEEecccceeeecCEE-
Confidence 999997 567999999999999998866554332 234999999999999999999999999999999999876664
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHH
Q 001014 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAA 410 (1190)
Q Consensus 331 g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~ 410 (1190)
...++|+. +++..+++.++++.+++++|++ +|++.||||+++ +|+++++|+.||+++|.+++..+|.++.|++++
T Consensus 213 --~~siaPa~-i~~~~~~~A~~~a~~i~~~L~y-vGVl~vE~Fv~~-dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHl 287 (375)
T COG0026 213 --RTSIAPAR-IPDDLQAQAEEMAKKIAEELDY-VGVLAVEFFVTP-DGELLVNEIAPRVHNSGHWTIDGCETSQFEQHL 287 (375)
T ss_pred --EEEEecCc-CCHHHHHHHHHHHHHHHHHcCc-eEEEEEEEEEEC-CCcEEEeeccCCCCCccccchhhccccHHHHHH
Confidence 34578996 9999999999999999999999 599999999997 789999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCccccCCCCccccCCcC--------eEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHH
Q 001014 411 KLSVGYSLDQIPNDITKKTPASFEPSID--------YVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQK 482 (1190)
Q Consensus 411 ~~alG~~l~~~~~~i~~~~~~~f~p~~~--------~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~k 482 (1190)
|+.+|+||++... ..|+.+.--++ .-+.++|.|+.+.|.+...+.+++| |||..++.|.++..++
T Consensus 288 RAv~glPLg~~~~----~~p~vMvNlLG~~~~~~~~~~~l~~p~~~lH~YGK~e~R~gRKm---GHvn~~~~~~~~~~~~ 360 (375)
T COG0026 288 RAVLGLPLGSTTL----LSPSVMVNLLGDDVPPDDVKAVLALPGAHLHWYGKAEARPGRKM---GHVNVLGSDSDELEQL 360 (375)
T ss_pred HHHhCCCCCCccc----cCceEEEEecCCCCchhhhHHHHhCCCCEEEEecCccCCCCCee---eeEEeecCCHHHHHHH
Confidence 9999999998432 11221111111 2234788999999999888999999 9999999997777766
Q ss_pred HHHh
Q 001014 483 ALRS 486 (1190)
Q Consensus 483 a~~~ 486 (1190)
+...
T Consensus 361 ~~~l 364 (375)
T COG0026 361 AALL 364 (375)
T ss_pred HHhh
Confidence 5544
No 59
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=4.2e-36 Score=355.60 Aligned_cols=385 Identities=16% Similarity=0.176 Sum_probs=289.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecC--CCCCcCccccCCcc-eeecCCcHHHHHHHhhhcCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNS--NPETVSTDYDTSDR-LYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~--~p~~~s~~~~~ad~-~~~~p~~~e~v~~i~~~~~~ 719 (1190)
.+||||||+|.. -..++++|++.|++++++-. ||.+.. .++. .++++.+.+.++++|+++++
T Consensus 2 ~~kVLvlG~G~r-----------e~al~~~l~~~g~~v~~~~~~~Npg~~~----~a~~~~~~~~~d~e~l~~~~~~~~i 66 (435)
T PRK06395 2 TMKVMLVGSGGR-----------EDAIARAIKRSGAILFSVIGHENPSIKK----LSKKYLFYDEKDYDLIEDFALKNNV 66 (435)
T ss_pred ceEEEEECCcHH-----------HHHHHHHHHhCCCeEEEEECCCChhhhh----cccceeecCCCCHHHHHHHHHHhCC
Confidence 369999999993 33447789999987777644 555421 2222 45678899999999999999
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCC-CceeecCHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQP-KGGIAKSEADA 798 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p-~~~~~~s~~e~ 798 (1190)
|+|+++.+.+....++..++ +.| ++++||+.++++++.||.+++++|+++|||+| .+..+.+.+++
T Consensus 67 d~Vi~~~d~~l~~~~~~~l~----------~~G---i~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~ 133 (435)
T PRK06395 67 DIVFVGPDPVLATPLVNNLL----------KRG---IKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDA 133 (435)
T ss_pred CEEEECCChHHHHHHHHHHH----------HCC---CcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHH
Confidence 99999988877777788888 889 99999999999999999999999999999997 45577777888
Q ss_pred HHHHHHhCCcEEEecCcCCCCcceEEeCCH-HHHHHHHHHhHhh-CCCCcEEEEEecCCcceEEEeEEecCCCcEEEEee
Q 001014 799 LAIAKEIGYPVVVRPSYVLGGRAMEIVYTD-ETLVTYLENAVEV-DPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI 876 (1190)
Q Consensus 799 ~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~-~el~~~~~~~~~~-~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i 876 (1190)
..++.+++||+||||+++.||+||.++++. +++++++..+... ....+++||||| .|.|++|++++|++ .++++++
T Consensus 134 ~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl-~G~E~Svd~~~dg~-~~~~l~~ 211 (435)
T PRK06395 134 ARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKM-TGEEFSLQAFSDGK-HLSFMPI 211 (435)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeec-CCceEEEEEEEcCC-eEEEecc
Confidence 888888899999999999999999999653 3344545444332 334679999999 89999999999864 6777777
Q ss_pred eeeeecc-----ccccccccccc----CCCCCCHHHHHHHHHHHHHHHHHcC-----CCcceeEEEEEecCCCEEEEEEc
Q 001014 877 MEHIEQA-----GVHSGDSACMI----PTKTISSSCLDTISSWTIKLAKRLN-----VCGLMNCQYAITTSGDVYLLEAN 942 (1190)
Q Consensus 877 ~e~~~~~-----g~~~gd~~~~~----p~~~l~~~~~~~i~~~a~~i~~~Lg-----~~G~~~ief~~d~~g~~~viEiN 942 (1190)
.++.++. |+++|...... |++.++++..+++.+++.+++++|+ ++|++++||++ +++++||||+|
T Consensus 212 ~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~l-t~~gp~ViE~n 290 (435)
T PRK06395 212 VQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMD-TPNGVKVIEIN 290 (435)
T ss_pred cceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEE-eCCCcEEEEEe
Confidence 7665543 66665433222 3445999999999999999999999 68999999999 67789999999
Q ss_pred cCCCCC-hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCccccCCeeEEee-------------ccC--CCcccCCCce-
Q 001014 943 PRASRT-VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTKEVIPKHVSVKE-------------AVL--PFEKFQGCDV- 1004 (1190)
Q Consensus 943 pR~~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~~~~~~~~~vk~-------------~~~--~~~~~~~~~~- 1004 (1190)
+|+++. ...+....+.|+.+++.+++.| ++. ++.+.. +..++.. ++. +....+++..
T Consensus 291 ~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~~~~~~~----~~~~~~~l~~~gYp~~~~~g~i~~~~~~~~~~~~~~ 365 (435)
T PRK06395 291 ARFADPEGINVLYLLKSDFVETLHQIYSG-NLNGSIKFER----KATVLKYIVPPGYGENPSPGRIKIDKTIFDSNSDVY 365 (435)
T ss_pred CCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCCCceecC----CCEEEEEEecCCCCCCCCCCceeccccccCCCCEEE
Confidence 999984 4444566789999999999999 432 222111 1111110 000 1000112222
Q ss_pred eeCCc---------ccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHC
Q 001014 1005 LLGPE---------MRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDI 1066 (1190)
Q Consensus 1005 ~lg~~---------~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1190)
+-|+. ...+|+|++.|+|++||..+|+.+....- +..+++.+++.+..+.+.++.++.+
T Consensus 366 ~~~~~~~~~~~~s~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~---~~~~~R~Dig~~~~~~~~~~~~~~~ 433 (435)
T PRK06395 366 YASVSGTLNDVKTSGSRSLAIIAKGDSIPEASEKVDSDLNAVH---GSYYVRRDIGDSDFIRKKIKNAKAL 433 (435)
T ss_pred EeeccccCCCeEECCCcEEEEEEEcCCHHHHHHHHHHHHhccC---CCcEeecchhhHHHHHHHHHHHHHh
Confidence 11221 22356899999999999999999988632 5578899999999999888887653
No 60
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=2.3e-36 Score=389.53 Aligned_cols=366 Identities=21% Similarity=0.325 Sum_probs=293.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC---------CcHHHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP---------LTVEDVLNV 713 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p---------~~~e~v~~i 713 (1190)
.|||||+|.|++ +++++++++++|++++++.++++..+.....+|+.|..+ .+.+.++++
T Consensus 5 ~kkvLianrGei-----------avri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~i 73 (1146)
T PRK12999 5 IKKVLVANRGEI-----------AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRV 73 (1146)
T ss_pred ccEEEEECCcHH-----------HHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHH
Confidence 689999999996 889999999999999999998887777777899988643 358999999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG-- 790 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~-- 790 (1190)
++++++|+|++.+|.. ....++..++ +.| ++++||++++++++.||..++++++++|||+|++.
T Consensus 74 Ak~~~iDaI~PgyGflsE~~~~a~~~e----------~~G---i~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~ 140 (1146)
T PRK12999 74 AKQAGVDAIHPGYGFLSENPEFARACA----------EAG---ITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEG 140 (1146)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHH----------HcC---CcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCccc
Confidence 9999999999987654 3346677777 889 99999999999999999999999999999998765
Q ss_pred eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEec
Q 001014 791 IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 791 ~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
.+.+.+++.++++++|||+|+||+.|+||+||++|++.+||.++++.+.. ..+..++++|+||++++|++|++++|
T Consensus 141 ~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D 220 (1146)
T PRK12999 141 PIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGD 220 (1146)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEE
Confidence 58999999999999999999999999999999999999999999887543 23456899999997779999999999
Q ss_pred CCCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCC
Q 001014 867 SCGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 867 ~~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
++|+++.+.-.+ .+... |. ......|+..++++..+++.+.+.++++++||.|++++||+++.+|++||||||||+
T Consensus 221 ~~G~vv~l~erdcsvqrr--~q-k~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRl 297 (1146)
T PRK12999 221 KHGNVVHLYERDCSVQRR--HQ-KVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRI 297 (1146)
T ss_pred CCCCEEEEEccccceeec--Cc-cEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCC
Confidence 888876542111 01110 10 011223666799999999999999999999999999999999877799999999999
Q ss_pred CCChhhhhcccCCCHHHHHHHHHcCCCCCCCCC--C-c-cccCCeeEEeeccC---CCccc-CCC------------cee
Q 001014 946 SRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGF--T-K-EVIPKHVSVKEAVL---PFEKF-QGC------------DVL 1005 (1190)
Q Consensus 946 ~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~--~-~-~~~~~~~~vk~~~~---~~~~~-~~~------------~~~ 1005 (1190)
+++++++..++|+|+++.++++++|.++..... + + ......+++++.+. |.+.| |+. ...
T Consensus 298 qveh~vte~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr 377 (1146)
T PRK12999 298 QVEHTVTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVR 377 (1146)
T ss_pred CCcchHHHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEE
Confidence 999888899999999999999999999986432 1 1 23344566775554 21111 111 111
Q ss_pred e-------CC----cccc-cceeeeeeCCHHHHHHHHHHHcC
Q 001014 1006 L-------GP----EMRS-TGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1006 l-------g~----~~rs-~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
+ |. ..-| .+.|++.|+|.++|..++.++..
T Consensus 378 ~d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~ 419 (1146)
T PRK12999 378 LDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALR 419 (1146)
T ss_pred eeccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHh
Confidence 1 00 1113 45799999999999999988864
No 61
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=6.2e-36 Score=387.85 Aligned_cols=366 Identities=17% Similarity=0.258 Sum_probs=291.2
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHHhh
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVID 715 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i~~ 715 (1190)
|||||+|+|++ +++++++|+++|+++++++++++..+.....+|+.|.. ..+.+.++++|+
T Consensus 2 ~kvLI~g~Gei-----------a~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~ 70 (1201)
T TIGR02712 2 DTVLIANRGEI-----------AVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAK 70 (1201)
T ss_pred cEEEEECCCHH-----------HHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHH
Confidence 79999999996 88899999999999999999999888888789998863 246899999999
Q ss_pred hcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCC-ceeec
Q 001014 716 LERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPK-GGIAK 793 (1190)
Q Consensus 716 ~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~-~~~~~ 793 (1190)
++++|+|+++++.. ....++..++ +.| ++++||++++++++.||..+|++|+++|||+|+ +..++
T Consensus 71 ~~~idaIiPG~gflsE~~~~a~~~e----------~~G---i~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~ 137 (1201)
T TIGR02712 71 KTGAQAIHPGYGFLSENAAFAEACE----------AAG---IVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLS 137 (1201)
T ss_pred HHCCCEEEeCCcccccCHHHHHHHH----------HcC---CcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecC
Confidence 99999999987654 3335677777 889 999999999999999999999999999999966 56789
Q ss_pred CHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecCCC
Q 001014 794 SEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADSCG 869 (1190)
Q Consensus 794 s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~~G 869 (1190)
+.+++.++++++||||||||..++||+||.+|+|.+||.++++.+.. .+.+..++||+||++++|++|++++|++|
T Consensus 138 s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g 217 (1201)
T TIGR02712 138 SLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKG 217 (1201)
T ss_pred CHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCC
Confidence 99999999999999999999999999999999999999998887543 23456799999997789999999999988
Q ss_pred cEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec-CCCEEEEEEccCCCC
Q 001014 870 NVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPRASR 947 (1190)
Q Consensus 870 ~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~-~g~~~viEiNpR~~~ 947 (1190)
+++.++..+. +...+ .......|++.++++..+++.+.+.+++++|+|+|++++||+++. +|++||||||||+++
T Consensus 218 ~vv~lg~rd~s~qr~~---~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~ 294 (1201)
T TIGR02712 218 KVVALGERDCSLQRRN---QKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQV 294 (1201)
T ss_pred eEEEeeEEEeeeEecC---ccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCc
Confidence 8887765442 11111 111222466679999999999999999999999999999999974 588999999999999
Q ss_pred ChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcc---------------cCCC---ceee--C
Q 001014 948 TVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEK---------------FQGC---DVLL--G 1007 (1190)
Q Consensus 948 s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~---------------~~~~---~~~l--g 1007 (1190)
+++++..++|+|++++++++++|++++............+++...+++.+. +++. +... |
T Consensus 295 ~~~lte~~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~~vrvd~~v~~G 374 (1201)
T TIGR02712 295 EHPVTEMVTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPDDVRVDTWVETG 374 (1201)
T ss_pred chhhHHHHhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCCeEEEeceecCC
Confidence 999999999999999999999999875221100001223344333332110 1110 0000 1
Q ss_pred Ccc-----cccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1008 PEM-----RSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1008 ~~~-----rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
.+. ..+|.|++.|+|.++|..++.++...
T Consensus 375 ~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~ 408 (1201)
T TIGR02712 375 TEVSPEYDPMLAKIIVHGSDREDAILKLHQALAE 408 (1201)
T ss_pred CEECCccCCCeEEEEEEECCHHHHHHHHHHHHhc
Confidence 111 23678999999999999999888653
No 62
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=6.1e-35 Score=345.67 Aligned_cols=368 Identities=17% Similarity=0.212 Sum_probs=270.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEcc--CCCCCCCCccCcce-EEECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINS--NPATIMTDPGLADR-TYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~--~~~~~~~~~~~ad~-~~i~p~~~~~v~~i~~~~~~ 168 (1190)
.+||||||+| ++|+ .++++|++.|++++++.. ||.+ ...++. .++++.+.+.+.++|+++++
T Consensus 2 ~~kVLvlG~G------~re~-----al~~~l~~~g~~v~~~~~~~Npg~----~~~a~~~~~~~~~d~e~l~~~~~~~~i 66 (435)
T PRK06395 2 TMKVMLVGSG------GRED-----AIARAIKRSGAILFSVIGHENPSI----KKLSKKYLFYDEKDYDLIEDFALKNNV 66 (435)
T ss_pred ceEEEEECCc------HHHH-----HHHHHHHhCCCeEEEEECCCChhh----hhcccceeecCCCCHHHHHHHHHHhCC
Confidence 4699999999 5565 788899999998888854 3332 123333 45788899999999999999
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe-eecCCHHHHHHHHHHc
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS-GIGNTLDECISIANEI 247 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~-~~v~s~~e~~~~~~~i 247 (1190)
|+|+++.+.+... +. .+.+++.|++++|++.++++++.||..||++|+++|||+|++ ..+.+.+++..+..++
T Consensus 67 d~Vi~~~d~~l~~--~~----~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~ 140 (435)
T PRK06395 67 DIVFVGPDPVLAT--PL----VNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITS 140 (435)
T ss_pred CEEEECCChHHHH--HH----HHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhh
Confidence 9999998754432 21 335777899999999999999999999999999999999754 4676778888877888
Q ss_pred CCCcEEEecCCCCCCcceEEeCCH-HHHHHHHHHHHhc-CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 248 GEFPLIIRPAFTLGGTGGGIAYNK-EEFEAICKAGLAA-SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 248 g~~PvVVKP~~g~gg~Gv~iv~~~-~el~~~~~~~~~~-~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
+ ||+||||++++||+||.+|++. +++.+++..+... +....+||||||.| +||+++++.|+ +.+.+++..+.++.
T Consensus 141 ~-~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~Svd~~~dg-~~~~~l~~~~d~~r 217 (435)
T PRK06395 141 M-KDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFSLQAFSDG-KHLSFMPIVQDYKR 217 (435)
T ss_pred C-CCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEEEEEEEcC-CeEEEecccceeee
Confidence 9 9999999999999999999543 2333433333322 23568999999999 89999999864 45666666665543
Q ss_pred -----CCcccccEEEEe----cCCCCCHHHHHHHHHHHHHHHHHhC-----CccceEEEEEEEecCCCcEEEEEeCCCCC
Q 001014 326 -----MGVHTGDSITVA----PAQTLTDKEYQRLRDYSIAIIREIG-----VECGGSNVQFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 326 -----~g~~~g~~~~~~----Pa~~l~~~~~~~l~~~a~~i~~~lg-----~~~G~~~vef~~~~~~g~~~viEiNpR~~ 391 (1190)
.|+++|.+..++ |.+.++++..+++.+.+.+++++|+ ++ |++++||+++ ++++||||+|||++
T Consensus 218 ~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~-G~l~~~~~lt--~~gp~ViE~n~R~g 294 (435)
T PRK06395 218 AYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFK-GIMYGQFMDT--PNGVKVIEINARFA 294 (435)
T ss_pred cccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceE-EEEEEEEEEe--CCCcEEEEEeCCCC
Confidence 378888887776 4444899999999999999999999 54 7788999998 56699999999999
Q ss_pred Cc-hHHHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCc-cc--------cCCcCeEEe----eece--eeecccCCC
Q 001014 392 RS-SALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPA-SF--------EPSIDYVVT----KIPR--FAFEKFPGS 455 (1190)
Q Consensus 392 gs-~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~-~f--------~p~~~~v~~----k~p~--~~~~~~~~~ 455 (1190)
+. ...+......|+.+.+.+++.| +|+. .........+ .+ .|..+.+.. ..+. +-+....+.
T Consensus 295 dpe~~~il~~l~~d~~~~~~~~~~g-~l~~-~~~~~~~~~~~~~l~~~gYp~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 372 (435)
T PRK06395 295 DPEGINVLYLLKSDFVETLHQIYSG-NLNG-SIKFERKATVLKYIVPPGYGENPSPGRIKIDKTIFDSNSDVYYASVSGT 372 (435)
T ss_pred CccHHhhhhhcccCHHHHHHHHhcC-CCCC-CceecCCCEEEEEEecCCCCCCCCCCceeccccccCCCCEEEEeecccc
Confidence 74 3333455689999999999999 5532 1111111111 01 111221111 0110 101111111
Q ss_pred CcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh
Q 001014 456 EPLLTTQMKSVGEAMALGRTFQESFQKALRSLE 488 (1190)
Q Consensus 456 ~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~ 488 (1190)
...+.+...++|+|++.|.|++||.+||+++++
T Consensus 373 ~~~~~s~ggRv~~vv~~g~~~~eA~~~a~~~~~ 405 (435)
T PRK06395 373 LNDVKTSGSRSLAIIAKGDSIPEASEKVDSDLN 405 (435)
T ss_pred CCCeEECCCcEEEEEEEcCCHHHHHHHHHHHHh
Confidence 234778888999999999999999999999997
No 63
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=4.9e-35 Score=345.63 Aligned_cols=376 Identities=17% Similarity=0.196 Sum_probs=273.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEE-ccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILI-NSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v-~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+||||||+| ++|| .++++|++.++.+.++ .+.......... ....-+...|.+.+.++++++++|+|
T Consensus 5 ~kvLviG~g------~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~~~-~~~~~~~~~d~~~l~~~a~~~~iD~V 72 (426)
T PRK13789 5 LKVLLIGSG------GRES-----AIAFALRKSNLLSELKVFPGNGGFPDDEL-LPADSFSILDKSSVQSFLKSNPFDLI 72 (426)
T ss_pred cEEEEECCC------HHHH-----HHHHHHHhCCCCCEEEEECCchHHhcccc-ccccCcCcCCHHHHHHHHHHcCCCEE
Confidence 699999999 7887 8999999998543333 222121111110 00012456789999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+++.+. ++...+ .+.++++|++++||+..+++++.||..+|++|+++|||+|++..+++.+++.+++++++ ||
T Consensus 73 v~g~E~--~l~~gl----ad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~-~P 145 (426)
T PRK13789 73 VVGPED--PLVAGF----ADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEM-LP 145 (426)
T ss_pred EECCch--HHHHHH----HHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcC-CC
Confidence 987763 222222 34578899999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC--
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP-- 325 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~-- 325 (1190)
+||||..+++|+||.++++.+|+.++++.++... .+..++|||||+| +|+++.++.|+ +.+.+++..+.+..
T Consensus 146 vVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg-~~~~~lp~~~d~k~~~ 223 (426)
T PRK13789 146 IVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDG-DSYFLLPAAQDHKRAF 223 (426)
T ss_pred EEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEECC-CEEEEccceEeccccc
Confidence 9999999999999999999999999999886432 1347999999999 99999999864 35555555554322
Q ss_pred ---CCcccccEEEEecCCCCCHHHHHHHHH-HHHHHHHHh---C--CccceEEEEEEEecCCCcEEEEEeCCCCCCc--h
Q 001014 326 ---MGVHTGDSITVAPAQTLTDKEYQRLRD-YSIAIIREI---G--VECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S 394 (1190)
Q Consensus 326 ---~g~~~g~~~~~~Pa~~l~~~~~~~l~~-~a~~i~~~l---g--~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~ 394 (1190)
.|+++|.+..++|++.++++..+++++ ++.+++++| | +. |++++||++++ +|++||+|+|||++.. .
T Consensus 224 d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~-Gvl~~e~~it~-~g~~~vlE~n~R~Gdpe~~ 301 (426)
T PRK13789 224 DGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYR-GLLYAGLMISP-EGEPKVVEFNCRFGDPETQ 301 (426)
T ss_pred CCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCce-EEEEEEEEEcC-CCCEEEEEEecCCCCcHhh
Confidence 478889999999998679888888865 445555444 5 64 99999999996 6779999999999873 3
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCc-ccc-----C---CcCeEEeeecee---eecccC-C---CCcc
Q 001014 395 ALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPA-SFE-----P---SIDYVVTKIPRF---AFEKFP-G---SEPL 458 (1190)
Q Consensus 395 ~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~-~f~-----p---~~~~v~~k~p~~---~~~~~~-~---~~~~ 458 (1190)
.+... ...|+.+.+++++.|.. +.....+...... .+. | ..+.. +.++.- ...-|. + .+.+
T Consensus 302 ~ll~~-l~~dl~~~~~~~~~g~l-~~~~~~~~~~~s~~vv~a~~gyp~~~~~g~~-i~~~~~~~~~~~if~a~~~~~~~~ 378 (426)
T PRK13789 302 CVLAM-LDGDLLELLYAASTGKI-KVVNLKLKQGAAAVVVLAAQGYPDSYEKNIP-LNLPETSGQNVVLFHAGTKKKDGK 378 (426)
T ss_pred hhhcc-CCCCHHHHHHHHHcCCC-CCCCceecCCceEEEEECcCCcCCCcCCCCE-EeccCcCCCCcEEEEeeeeeeCCE
Confidence 34344 45799999999999942 2211111111000 010 1 11111 112210 000111 0 2345
Q ss_pred cCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 459 LTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 459 l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
+.+...++..|++.|.|++||.++|+++++ +.+.|.
T Consensus 379 ~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 415 (426)
T PRK13789 379 VFSSGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKT 415 (426)
T ss_pred EEeCCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 667778899999999999999999999997 565553
No 64
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=4e-35 Score=349.88 Aligned_cols=375 Identities=20% Similarity=0.237 Sum_probs=272.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+||||||+| ++|+ .++++|++. |+.++.+++...... ..++.+++.+.+.+.+.++++++++|+|
T Consensus 1 ~kvliiG~G------~~~~-----~l~~~l~~~~~~~~i~~~~~n~g~~---~~~~~~~~~~~d~~~l~~~~~~~~id~v 66 (420)
T PRK00885 1 MKVLVIGSG------GREH-----ALAWKLAQSPLVEKVYVAPGNAGTA---LLAENVVIDVTDIEALVAFAKEEGIDLT 66 (420)
T ss_pred CEEEEECCC------HHHH-----HHHHHHHhCCCCCEEEEeCCCHHHH---hhccccCCCCCCHHHHHHHHHHhCCCEE
Confidence 489999999 4444 688999886 656666655433322 1122334677899999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+++.+. .+... + .+.+++.|++++|++++++.+++||..+|++|+++|+|+|++..+.+.+++.+++++++ ||
T Consensus 67 i~~~e~--~l~~~--~--~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P 139 (420)
T PRK00885 67 VVGPEA--PLVAG--I--VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKG-AP 139 (420)
T ss_pred EECCch--HHHHH--H--HHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC-CC
Confidence 987652 22111 1 44688899999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC--
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP-- 325 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~-- 325 (1190)
+||||..++||+|+.+|+|.+|+.++++.++... ...++||||||+| +|++++++.++ +.+..++..+.+..
T Consensus 140 ~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g-~~~~~~~~~~~~~~~~ 217 (420)
T PRK00885 140 IVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFVDG-ENVLPLPTAQDHKRAG 217 (420)
T ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEECC-CceEeceeeEeeeecc
Confidence 9999999999999999999999999999876532 2458999999999 99999999864 45555555543322
Q ss_pred ---CCcccccEEEEecCCCCCHHHHHHHHH-HHHHHHHH---hCCc-cceEEEEEEEecCCCcEEEEEeCCCCCCc-hHH
Q 001014 326 ---MGVHTGDSITVAPAQTLTDKEYQRLRD-YSIAIIRE---IGVE-CGGSNVQFAVNPVDGEVMVIEMNPRVSRS-SAL 396 (1190)
Q Consensus 326 ---~g~~~g~~~~~~Pa~~l~~~~~~~l~~-~a~~i~~~---lg~~-~G~~~vef~~~~~~g~~~viEiNpR~~gs-~~l 396 (1190)
.++++|.+..+.|++.++++..+++.+ ++.+++++ +|+. .|++|+||++++ +++||+|+|||+++. +..
T Consensus 218 ~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~--~g~~viEin~R~g~~~~~~ 295 (420)
T PRK00885 218 DGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK--DGPKVIEFNARFGDPETQV 295 (420)
T ss_pred cCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC--CCcEEEEEecccCCccHHh
Confidence 256778888888987688887777765 55555554 4431 499999999994 469999999999885 323
Q ss_pred HHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCc-------cc--cCCcCeEEeeece-ee-ecccCCC---CcccCCC
Q 001014 397 ASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPA-------SF--EPSIDYVVTKIPR-FA-FEKFPGS---EPLLTTQ 462 (1190)
Q Consensus 397 ~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~-------~f--~p~~~~v~~k~p~-~~-~~~~~~~---~~~l~~~ 462 (1190)
....++.|+.+.+++++.|...+ +.......... .| .|..+..+..++. -. ...+++. +..+.+.
T Consensus 296 ~~~~~~~d~~~~~~~~~~g~~~~-~~~~~~~~~a~~~~~~~~gy~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (420)
T PRK00885 296 VLPRLKSDLVELLLAAADGKLDE-VELEWDDRAAVGVVLAAKGYPGDYRKGDVITGLEAADADKVFHAGTKLEDGKLVTN 374 (420)
T ss_pred hhhhccCCHHHHHHHHHcCCCCC-CCceECCCcEEEEEEeCCCCCCCCCCCCEeecccccCCCEEEECceeccCCeEEEe
Confidence 34456779999999999996442 21111111110 11 1111111111110 00 0011122 2345566
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhh-cCccC
Q 001014 463 MKSVGEAMALGRTFQESFQKALRSLE-CGFSG 493 (1190)
Q Consensus 463 ~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g 493 (1190)
..++|+|++.|.|++||..+|.++++ +.+.|
T Consensus 375 g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~ 406 (420)
T PRK00885 375 GGRVLCVTALGDTLEEAQKRAYAALDKIDFDG 406 (420)
T ss_pred CCEEEEEEEecCCHHHHHHHHHHHHhccCCCC
Confidence 68899999999999999999999997 55554
No 65
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.8e-35 Score=308.88 Aligned_cols=366 Identities=19% Similarity=0.316 Sum_probs=292.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~d 169 (1190)
..+|||++|+|.+ |..++-+++++|.+|+.+|...+.++ .+.++..| +.-+|.+.+..++++++||
T Consensus 11 ~a~kvmLLGSGEL-----------GKEvaIe~QRLG~eViAVDrY~~APA--mqVAhrs~Vi~MlD~~al~avv~rekPd 77 (394)
T COG0027 11 QATKVMLLGSGEL-----------GKEVAIEAQRLGVEVIAVDRYANAPA--MQVAHRSYVIDMLDGDALRAVVEREKPD 77 (394)
T ss_pred CCeEEEEecCCcc-----------chHHHHHHHhcCCEEEEecCcCCChh--hhhhhheeeeeccCHHHHHHHHHhhCCC
Confidence 4468999999987 67899999999999999999988877 67788887 4556999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAM-KTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l-~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
.|+|..+ +.+ ...--.+|+.|+.++ |+..+...+.|+...|+++ +++|+|+.+|+.+++.+++.+.++++|
T Consensus 78 ~IVpEiE---AI~----td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iG 149 (394)
T COG0027 78 YIVPEIE---AIA----TDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIG 149 (394)
T ss_pred eeeehhh---hhh----HHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcC
Confidence 9999776 222 222334788999977 8999999999999999876 579999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC--CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCC
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS--LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPM 326 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~ 326 (1190)
|||+|||..+++|+|..+++++++++++++.+.... ..+.+|||+||+..-|+++-.++..+|+..+...+.+++
T Consensus 150 -fPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PIGHrq-- 226 (394)
T COG0027 150 -FPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGHRQ-- 226 (394)
T ss_pred -CCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCccccc--
Confidence 999999999999999999999999999999988553 367899999999977888888887776654322333333
Q ss_pred CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHH
Q 001014 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIA 406 (1190)
Q Consensus 327 g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~ 406 (1190)
..|+....+-++.++....++.+.+|.++.++||-. |+|+||+++. .+++||-|+.||++++..++-...+++-|
T Consensus 227 --~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~-GiFGVElfv~--gDeV~FsEVSPRPHDTGmVTLiSq~lsEF 301 (394)
T COG0027 227 --EDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGR-GLFGVELFVK--GDEVIFSEVSPRPHDTGMVTLISQDLSEF 301 (394)
T ss_pred --CCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCc-cceeEEEEEe--CCEEEEeecCCCCCCCceEEEEeccchHH
Confidence 235555566566699999999999999999999997 9999999999 77999999999999987666666689999
Q ss_pred HHHHHHHcCCCCCCCCccccCCCC------ccccCCcCeEE--eeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHH
Q 001014 407 KMAAKLSVGYSLDQIPNDITKKTP------ASFEPSIDYVV--TKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQE 478 (1190)
Q Consensus 407 ~~~~~~alG~~l~~~~~~i~~~~~------~~f~p~~~~v~--~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~e 478 (1190)
+.+++..+|+|++++..-.++.+. ....|..+.+. ..+|.-....|.+.....++. .|-..+.+.+.++
T Consensus 302 ~LH~RAiLGLPi~~i~~~~P~AS~vI~~~~~~~~~~f~~l~~AL~~p~t~vRlFGKP~~~~~RR---mGVALA~a~~Ve~ 378 (394)
T COG0027 302 ALHVRAILGLPIPEIRQISPAASAVILAQETSQAPTFDGLAEALGVPDTQVRLFGKPEADGGRR---LGVALATAESVEE 378 (394)
T ss_pred HHHHHHHhCCCccceeeecccccceeeccccccCCchhhHHHHhcCCCceEEEecCCcccCCce---eeEEEecCccHHH
Confidence 999999999999977442111100 11223322222 233433333444333333344 4999999999999
Q ss_pred HHHHHHHhhh
Q 001014 479 SFQKALRSLE 488 (1190)
Q Consensus 479 a~~ka~~~l~ 488 (1190)
|++||.++.+
T Consensus 379 Are~A~~aa~ 388 (394)
T COG0027 379 ARERARKAAS 388 (394)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 66
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=1.2e-35 Score=316.05 Aligned_cols=203 Identities=35% Similarity=0.539 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHcCCCCCCceee--cCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----CC
Q 001014 771 DRERFNAIIKELSIEQPKGGIA--KSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----PE 844 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~--~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~~ 844 (1190)
||..++++++++|+|+|++... ++.+++.++++++|||++|||++++||+||.+++|.++|.++++.+.... ++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 8999999999999999999887 99999999999999999999999999999999999999999998865544 47
Q ss_pred CcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcce
Q 001014 845 RPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLM 924 (1190)
Q Consensus 845 ~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~ 924 (1190)
.+++||+|+++.+|++|++++|+.|+++..+.+|+..+. |++++....|++.++++..++|++.+.++++++||+|++
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~--hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~ 158 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQR--HSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAG 158 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEE--TTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeecccccc--ccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecc
Confidence 899999999888999999999999999999999999885 999999999999999999999999999999999999999
Q ss_pred eEEEEEec-CCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCC
Q 001014 925 NCQYAITT-SGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 925 ~ief~~d~-~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
+|||.++. ++++||||+|||+++++|++++++|+|++++++++++|++|.+
T Consensus 159 tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~e 210 (211)
T PF02786_consen 159 TVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLDE 210 (211)
T ss_dssp EEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GSC
T ss_pred eEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 99999974 8999999999999999999999999999999999999999875
No 67
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=7.1e-34 Score=340.10 Aligned_cols=376 Identities=19% Similarity=0.212 Sum_probs=266.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcce-EEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADR-TYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~-~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+||||||+|.. +.+++++++++|+.+.++..+.+... .....+. +.+++.|.+.+.++++++++|+|
T Consensus 1 ~kiliiG~G~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~l~~~~~~~~id~v 68 (423)
T TIGR00877 1 MKVLVIGNGGR-----------EHALAWKLAQSPLVKYVYVAPGNAGT-ARLAKNKNVAISITDIEALVEFAKKKKIDLA 68 (423)
T ss_pred CEEEEECCChH-----------HHHHHHHHHhCCCccEEEEECCCHHH-hhhcccccccCCCCCHHHHHHHHHHhCCCEE
Confidence 48999999954 56999999999976555532222111 1111112 23567789999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+++.+.. +.. . ..+.++++|++++|++++++++++||..+|++|+++|||+|++..+.+.+++.+++++++ ||
T Consensus 69 i~~~e~~--l~~--~--~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g-~P 141 (423)
T TIGR00877 69 VIGPEAP--LVL--G--LVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKG-AP 141 (423)
T ss_pred EECCchH--HHH--H--HHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC-CC
Confidence 9876522 111 1 145788899999999999999999999999999999999999999999999999999999 99
Q ss_pred -EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC---CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC--
Q 001014 252 -LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS---LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP-- 325 (1190)
Q Consensus 252 -vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~---~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~-- 325 (1190)
+|+||..++||+|+.+++|.+|+.+++..+...+ ...+++|||||+| +|++++++.|+ +.+.+++..+.+..
T Consensus 142 ~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~dg-~~~~~~~~~~~~~~~~ 219 (423)
T TIGR00877 142 AIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAFVDG-KTVIPMPPAQDHKRAL 219 (423)
T ss_pred eEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEEEcC-CeEEeceeeeeeeecc
Confidence 9999999999999999999999999998876542 2457999999999 89999999874 45555555444322
Q ss_pred ---CCcccccEEEEecCCCCCHHHHHHH-HHHHHHHHH---HhC--CccceEEEEEEEecCCCcEEEEEeCCCCCCchHH
Q 001014 326 ---MGVHTGDSITVAPAQTLTDKEYQRL-RDYSIAIIR---EIG--VECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSAL 396 (1190)
Q Consensus 326 ---~g~~~g~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~---~lg--~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l 396 (1190)
.++++|.+....|++.+++...+++ .+.+.++++ ++| + +|++|+||++++ +| +||+|||||++++...
T Consensus 220 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~-~G~~~ie~~~t~-~g-~~viEin~R~g~~~~~ 296 (423)
T TIGR00877 220 EGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPY-KGVLYAGLMLTK-EG-PKVLEFNCRFGDPETQ 296 (423)
T ss_pred cCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EeEEEEEEEEEC-CC-cEEEEEEccCCCccce
Confidence 2566677777888866887766554 344444444 444 5 499999999995 44 9999999999886332
Q ss_pred -HHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCcc-cc-----CCcCeEEeeec-----------eeeecccCCCCcc
Q 001014 397 -ASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPAS-FE-----PSIDYVVTKIP-----------RFAFEKFPGSEPL 458 (1190)
Q Consensus 397 -~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~~-f~-----p~~~~v~~k~p-----------~~~~~~~~~~~~~ 458 (1190)
....++.|+.+.+.+++.|. ++.+..........+ +. |........+. .|.... ......
T Consensus 297 ~~~~~~~~dl~~~~~~~~~g~-l~~~~~~~~~~~a~~~~~~~~~yp~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 374 (423)
T TIGR00877 297 AVLPLLKSDLLEVCLAAVEGK-LDEVELRFDNRAAVTVVLASEGYPGDYRKGDPITGEPLIEAEGVKVFHAGT-KQDNGK 374 (423)
T ss_pred eEecccCCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEecCCcCCCCCCCCEeeCCcccccCCCEEEECce-eccCCE
Confidence 22336799999999999885 222211111111110 11 21111001111 010000 001233
Q ss_pred cCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 459 LTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 459 l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
+.++.+++|+|++.|.|.++|.++|.++++ +.+.|+
T Consensus 375 ~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~ 411 (423)
T TIGR00877 375 LVTSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGM 411 (423)
T ss_pred EEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 446667899999999999999999999997 555553
No 68
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=336.79 Aligned_cols=372 Identities=17% Similarity=0.199 Sum_probs=266.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC---CCccCcceEE-ECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM---TDPGLADRTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~---~~~~~ad~~~-i~p~~~~~v~~i~~~~ 166 (1190)
|+|+|||+|++. ++..++++++++|+++++++.+++... .....++..+ +...+.+.+.++++++
T Consensus 1 ~~k~~liv~~~~-----------~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 69 (416)
T PRK07206 1 MMKKVVIVDPFS-----------SGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKL 69 (416)
T ss_pred CCCeEEEEcCCc-----------hHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHc
Confidence 357999999984 367899999999999999987764321 1122223222 3345788999999999
Q ss_pred CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 001014 167 RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE 246 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ 246 (1190)
++|+|+|+.+ ..+..+. .+.+.+|++ +|++++++..++||..|+++|+++|+|+|++..+.+.+++.+++++
T Consensus 70 ~~d~vi~~~e--~~~~~~a-----~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~ 141 (416)
T PRK07206 70 GPEAIIAGAE--SGVELAD-----RLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQINTADWEEAEAWLRE 141 (416)
T ss_pred CCCEEEECCC--ccHHHHH-----HHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHh
Confidence 9999999765 3333322 234456655 3789999999999999999999999999999999999999999999
Q ss_pred cCCC---cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc-----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE
Q 001014 247 IGEF---PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA-----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 247 ig~~---PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~-----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
++ | |+||||..++||.|+.+|+|.+|+.++++++... .....++|||||+| .||+++++.. +|++.+..
T Consensus 142 ~g-~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~~~ 218 (416)
T PRK07206 142 NG-LIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLVTE 218 (416)
T ss_pred cC-CCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEEEE
Confidence 88 8 9999999999999999999999999999887642 12458999999999 9999999874 56655443
Q ss_pred eeeeeCCCCcccccEEEE-e-cCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--h
Q 001014 319 SIENVDPMGVHTGDSITV-A-PAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S 394 (1190)
Q Consensus 319 ~~e~~~~~g~~~g~~~~~-~-Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~ 394 (1190)
..... ......+..... . ..+ .+....+++.+.+.+++++||+.+|++|+||++++ +++++||||||++|+ .
T Consensus 219 ~~~~~-~~~~~~~~~~~~~~~~~p-~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~--~g~~liEin~R~~G~~~~ 294 (416)
T PRK07206 219 IVRYH-KTSLNSGSTVYDYDEFLD-YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA--DGPRLIEIGARLDGGLHP 294 (416)
T ss_pred eEEee-ecccCCCCceecccccCC-ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC--CCCEEEEECCccCCCCcc
Confidence 33221 111111111111 0 111 35678899999999999999996699999999994 459999999999986 4
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCCCCCCC--cccc--CCCCccc-cCCcCeEEeeec------------eeeecccCCCC-
Q 001014 395 ALASKATGFPIAKMAAKLSVGYSLDQIP--NDIT--KKTPASF-EPSIDYVVTKIP------------RFAFEKFPGSE- 456 (1190)
Q Consensus 395 ~l~~~atG~~l~~~~~~~alG~~l~~~~--~~i~--~~~~~~f-~p~~~~v~~k~p------------~~~~~~~~~~~- 456 (1190)
.++..++|+|+++.+++.++|.+..... .... +.....| .+..+.++.+++ .|.+..-+|..
T Consensus 295 ~~~~~~~G~d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v 374 (416)
T PRK07206 295 DVARLATGDSQLDATVESLADPDVFRETLREGYRLKAHVFNVFLISPAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYV 374 (416)
T ss_pred chhhhhcCcCHHHHHHHHHhCchhhccccCCCcChhhceEEEEEecCCCceEeCCccHHHHHhCCchhheEEecCCCCCc
Confidence 6689999999999999999997653111 1000 1111112 222223333332 12222222332
Q ss_pred cccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh
Q 001014 457 PLLTTQMKSVGEAMALGRTFQESFQKALRSLE 488 (1190)
Q Consensus 457 ~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~ 488 (1190)
.......++.|+|+..|+|.+|+.+...+.-+
T Consensus 375 ~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~~ 406 (416)
T PRK07206 375 PQTVDLFSQPGTVYLVHKDKEQLWQDYEKIRK 406 (416)
T ss_pred cCceecCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 22223345699999999999998877666644
No 69
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=6e-34 Score=336.37 Aligned_cols=379 Identities=15% Similarity=0.177 Sum_probs=269.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEec--CCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMN--SNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~--~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
..||||||+|.. -..++++|++.++.+.+.. .|+.+.......++ -....+.+.++++++++++|
T Consensus 4 ~~kvLviG~g~r-----------ehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~--~~~~~d~~~l~~~a~~~~iD 70 (426)
T PRK13789 4 KLKVLLIGSGGR-----------ESAIAFALRKSNLLSELKVFPGNGGFPDDELLPAD--SFSILDKSSVQSFLKSNPFD 70 (426)
T ss_pred CcEEEEECCCHH-----------HHHHHHHHHhCCCCCEEEEECCchHHhcccccccc--CcCcCCHHHHHHHHHHcCCC
Confidence 479999999984 3455889999885433332 23321111000111 13457799999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++..+......+++.++ +.| ++++||+..+++++.||.++|++|+++|||+|+|..+++.+++.+
T Consensus 71 ~Vv~g~E~~l~~glad~~~----------~~G---ip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~ 137 (426)
T PRK13789 71 LIVVGPEDPLVAGFADWAA----------ELG---IPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLS 137 (426)
T ss_pred EEEECCchHHHHHHHHHHH----------HcC---CCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHH
Confidence 9998766666667888888 899 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----CCCcEEEEEecCCcceEEEeEEecCCCcEEEEee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI 876 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i 876 (1190)
++++++||+||||..+++|+||.+++|.+|+.++++.++... ....++||||| .|.|++|.+++|+. .+..+++
T Consensus 138 ~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl-~G~E~Sv~~~~dg~-~~~~lp~ 215 (426)
T PRK13789 138 YLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFM-EGQEASIFAISDGD-SYFLLPA 215 (426)
T ss_pred HHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECc-CCeEEEEEEEECCC-EEEEccc
Confidence 999999999999999999999999999999999999875321 12479999999 78999999999864 5555554
Q ss_pred ee-eee----cccccccccccccCCCCCCHHHHHHHHH-HHHHHHHHc---C--CCcceeEEEEEecCCCEEEEEEccCC
Q 001014 877 ME-HIE----QAGVHSGDSACMIPTKTISSSCLDTISS-WTIKLAKRL---N--VCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 877 ~e-~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~~-~a~~i~~~L---g--~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
.+ |.. ..|.++|......|++.++++..+++++ ++++++++| | ++|++++||+++.+|++||+|+|||+
T Consensus 216 ~~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~ 295 (426)
T PRK13789 216 AQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRF 295 (426)
T ss_pred eEecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCC
Confidence 43 321 1245555555556777789988888865 556666555 5 78999999999767779999999999
Q ss_pred CCC-hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCc----------cccCCeeEEeeccCCCccc--CCCceee-CC--
Q 001014 946 SRT-VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTK----------EVIPKHVSVKEAVLPFEKF--QGCDVLL-GP-- 1008 (1190)
Q Consensus 946 ~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~----------~~~~~~~~vk~~~~~~~~~--~~~~~~l-g~-- 1008 (1190)
|+. ...+....+.||.+++++++.|+... ++.+.. +..+..+..-.++. +... +++.+.- |+
T Consensus 296 Gdpe~~~ll~~l~~dl~~~~~~~~~g~l~~~~~~~~~~~s~~vv~a~~gyp~~~~~g~~i~-~~~~~~~~~~if~a~~~~ 374 (426)
T PRK13789 296 GDPETQCVLAMLDGDLLELLYAASTGKIKVVNLKLKQGAAAVVVLAAQGYPDSYEKNIPLN-LPETSGQNVVLFHAGTKK 374 (426)
T ss_pred CCcHhhhhhccCCCCHHHHHHHHHcCCCCCCCceecCCceEEEEECcCCcCCCcCCCCEEe-ccCcCCCCcEEEEeeeee
Confidence 984 22334556789999999999995321 222111 11111110000010 1110 1211110 22
Q ss_pred ---ccccc-c---eeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCC
Q 001014 1009 ---EMRST-G---EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLT 1052 (1190)
Q Consensus 1009 ---~~rs~-G---~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~ 1052 (1190)
+..+. | .|++.|+|++||..+|..+.... -..| .+++.+++.
T Consensus 375 ~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i-~~~~-~~~R~Dig~ 423 (426)
T PRK13789 375 KDGKVFSSGGRILGIVAQGKDLKDSVDQAYSFLEKI-QAPK-TFYRKDIGR 423 (426)
T ss_pred eCCEEEeCCCeEEEEEEecCCHHHHHHHHHHHHhcC-CCCC-CEEeccccc
Confidence 12232 2 46688999999999999998753 3344 677877654
No 70
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=7.1e-33 Score=329.77 Aligned_cols=378 Identities=20% Similarity=0.244 Sum_probs=272.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC--CCeEEEEcc--CCCCCCCCccCcceEEECC-CCHHHHHHHHHHcC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVILINS--NPATIMTDPGLADRTYITP-MTPELVEQVLEKER 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~--G~~vi~v~~--~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~ 167 (1190)
+||||||+| ++|| .++++|++. |++|+++.. ||........+++..+..+ .|.+.+.+++++++
T Consensus 1 mkVLviG~G------greh-----al~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~ 69 (486)
T PRK05784 1 MKVLLVGDG------AREH-----ALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVAKEVN 69 (486)
T ss_pred CEEEEECCc------hhHH-----HHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHHHHhC
Confidence 489999999 6676 788899998 999999966 4433221222334445444 47899999999999
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC-CeeecCCHHHHHHHHHH
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP-PSGIGNTLDECISIANE 246 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp-~~~~v~s~~e~~~~~~~ 246 (1190)
+|+|+++.+ .++...+ .+.|+.+|++++||+.++++++.||..+|++|+++|||+| ++..+++.+++.++++.
T Consensus 70 id~Vi~g~E--~~l~~gl----ad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~ 143 (486)
T PRK05784 70 PDLVVIGPE--EPLFAGV----ADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEY 143 (486)
T ss_pred CCEEEECCc--hHHHHHH----HHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhh
Confidence 999998765 3332222 4578889999999999999999999999999999999997 68888999999988854
Q ss_pred cCCCcEEEecCCCCCCcceEEeCCHHH-----HHHHH----HHHHhc-----CCCCcEEEeeecCCCeeeeEEEEEeCCC
Q 001014 247 IGEFPLIIRPAFTLGGTGGGIAYNKEE-----FEAIC----KAGLAA-----SLTSQVLVEKSLLGWKEYELEVMRDLAD 312 (1190)
Q Consensus 247 ig~~PvVVKP~~g~gg~Gv~iv~~~~e-----l~~~~----~~~~~~-----~~~~~vlVEe~I~G~~E~sv~v~~d~~g 312 (1190)
. +|+||||..++||+||.+|++.++ +.+++ +.++.. ..+..++|||||.| +|++|+++.|+ +
T Consensus 144 -~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG-~ 219 (486)
T PRK05784 144 -G-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDG-E 219 (486)
T ss_pred -c-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEEEEEEECC-C
Confidence 5 699999999999999999999873 33443 443311 12468999999999 89999999854 3
Q ss_pred cEEEEEeeeeeCC-----CCcccccEEEEec----CCCCCHHHHHHHHHHHHHHHHHhCCc-----cceEEEEEEEecCC
Q 001014 313 NVVIICSIENVDP-----MGVHTGDSITVAP----AQTLTDKEYQRLRDYSIAIIREIGVE-----CGGSNVQFAVNPVD 378 (1190)
Q Consensus 313 ~~~~~~~~e~~~~-----~g~~~g~~~~~~P----a~~l~~~~~~~l~~~a~~i~~~lg~~-----~G~~~vef~~~~~~ 378 (1190)
.++.++..+.+.. .|+++|.+..+.| .+.++++..+++.+++.+++++|+.. .|++|+||++++ +
T Consensus 220 ~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~-~ 298 (486)
T PRK05784 220 TVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTE-L 298 (486)
T ss_pred eEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEec-C
Confidence 4554555544322 3678888888888 66578888888888888888777532 399999999983 3
Q ss_pred CcEEEEEeCCCCCCc--hHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCCccccCCcCeEEeeec
Q 001014 379 GEVMVIEMNPRVSRS--SALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTPASFEPSIDYVVTKIP 445 (1190)
Q Consensus 379 g~~~viEiNpR~~gs--~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~~~f~p~~~~v~~k~p 445 (1190)
++|+|||+|+|+++. ..+... ++.|+++.+++++.|. |..+..... ...|..+.|..+..+.-.+
T Consensus 299 ~GP~vIE~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~-l~~~~~~~~~~~~~~vv~as~gYp~~~~~~~g~~i~~~~ 376 (486)
T PRK05784 299 WGPTVIEYYSRFGDPEASNIIPR-IESDFGELFELAATGK-LSKAKIKFNEEPSVVKAIAPLGYPLSRDLASGRRIVVDL 376 (486)
T ss_pred CCcEEEEEecccCCchHHHHHHh-ccCCHHHHHHHHHcCC-CCCCCeeecCCceEEEEECCCCCCCcccCCCCCEEECCc
Confidence 459999999999994 556666 4559999999999995 222221111 1111111122222221111
Q ss_pred ------e-eeec-ccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-c-CccCC
Q 001014 446 ------R-FAFE-KFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLE-C-GFSGW 494 (1190)
Q Consensus 446 ------~-~~~~-~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~-~~~g~ 494 (1190)
. --|+ .....+..+-+...++..|++.|+|++||.++|+++++ + .+.|.
T Consensus 377 ~~~~~~~~~v~~ag~~~~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~ 435 (486)
T PRK05784 377 DKIKEEGCLVFFGSVELEGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTKL 435 (486)
T ss_pred cccccCCCEEEECCceeeCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCC
Confidence 0 0010 00012345677788899999999999999999999997 5 45553
No 71
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=8.2e-35 Score=309.52 Aligned_cols=204 Identities=37% Similarity=0.604 Sum_probs=180.9
Q ss_pred cHHHHHHHHHHcCCCCCCeeec--CCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----C
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIG--NTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----L 286 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v--~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~ 286 (1190)
||..++++++++|+|+|++... ++.+++.++++++| ||++|||++++||+|+++++|.+||.++++.....+ +
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iG-yPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg 79 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIG-YPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFG 79 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH--SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcC-CceEEeecccccccccccccchhhhhhhhhhccccCccccc
Confidence 8999999999999999999887 99999999999999 999999999999999999999999999998887655 3
Q ss_pred CCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 001014 287 TSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECG 366 (1190)
Q Consensus 287 ~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G 366 (1190)
+++++||+|++|++|++|++++|+.|++++++..+...+. |+|+++.++|+++|+++..++|++.+.++++++|+. |
T Consensus 80 ~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~--hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~-G 156 (211)
T PF02786_consen 80 DGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQR--HSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYV-G 156 (211)
T ss_dssp TS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEE--TTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-E-E
T ss_pred cceEEEeeehhhhhhhhhhhhhccccceeeeeeecccccc--ccccceeEeeccccchHHHHHHHHHHHHHHHhhCee-e
Confidence 7899999999999999999999999999999888877766 889999999999999999999999999999999995 9
Q ss_pred eEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCC
Q 001014 367 GSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQ 420 (1190)
Q Consensus 367 ~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~ 420 (1190)
+++|||.++++++++||||+|||+++++++++++||+|+.++++++++|.+|++
T Consensus 157 ~~tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~e 210 (211)
T PF02786_consen 157 AGTVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLDE 210 (211)
T ss_dssp EEEEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GSC
T ss_pred cceEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 999999999888999999999999999999999999999999999999999976
No 72
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=8.5e-33 Score=329.08 Aligned_cols=412 Identities=16% Similarity=0.174 Sum_probs=291.2
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhC--CCeEEEecC--CCCCcCccccCCcceeecC-CcHHHHHHHhhhcCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA--GYETIMMNS--NPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERP 719 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~--G~~vi~v~~--~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~ 719 (1190)
||||||+|.. -..+++++++. |++++++.. ||.+.......++.++..+ .+.+.++++++++++
T Consensus 2 kVLviG~Ggr-----------ehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~i 70 (486)
T PRK05784 2 KVLLVGDGAR-----------EHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNP 70 (486)
T ss_pred EEEEECCchh-----------HHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHHHHhCC
Confidence 7999999994 33447788887 999998866 6655443333455555544 459999999999999
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCC-CceeecCHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQP-KGGIAKSEADA 798 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p-~~~~~~s~~e~ 798 (1190)
|+|++..+......+++.|+ +.| ++++||++++++++.||.++|++|+++|||+| ++..+++.+++
T Consensus 71 d~Vi~g~E~~l~~glad~l~----------~~G---i~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea 137 (486)
T PRK05784 71 DLVVIGPEEPLFAGVADVLR----------EEG---FPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEA 137 (486)
T ss_pred CEEEECCchHHHHHHHHHHH----------hCC---CCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHH
Confidence 99998555434447888898 899 99999999999999999999999999999996 78888999999
Q ss_pred HHHHHHhCCcEEEecCcCCCCcceEEeCCHHH-----HHHHH----HHhHh---hC--CCCcEEEEEecCCcceEEEeEE
Q 001014 799 LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDET-----LVTYL----ENAVE---VD--PERPVLIDKYLSDAIEIDVDAL 864 (1190)
Q Consensus 799 ~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~e-----l~~~~----~~~~~---~~--~~~~vliEefI~~g~E~~v~v~ 864 (1190)
.++++.. +|+||||..++||+||.+|+|.++ +.+++ ++++. .+ ...+++||||| .|.|++|+++
T Consensus 138 ~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL-~G~E~SV~al 215 (486)
T PRK05784 138 AKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKV-DGVEYTLQVL 215 (486)
T ss_pred HHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEcc-CCeEEEEEEE
Confidence 9888665 799999999999999999999873 33444 33321 11 24589999999 8999999999
Q ss_pred ecCCCcEEEEe-eeeee--e--cccccccccccccC----CCCCCHHHHHHHHHHHHHHHHHcC------CCcceeEEEE
Q 001014 865 ADSCGNVVIGG-IMEHI--E--QAGVHSGDSACMIP----TKTISSSCLDTISSWTIKLAKRLN------VCGLMNCQYA 929 (1190)
Q Consensus 865 ~d~~G~v~~~~-i~e~~--~--~~g~~~gd~~~~~p----~~~l~~~~~~~i~~~a~~i~~~Lg------~~G~~~ief~ 929 (1190)
+|++ .++..+ ..+|. . ..|...|......| .+.++++..+++.+++++++++|+ |+|++|+||+
T Consensus 216 ~dG~-~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elm 294 (486)
T PRK05784 216 TDGE-TVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMM 294 (486)
T ss_pred ECCC-eEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE
Confidence 9864 444333 44432 1 11223333322334 445777777777788887776664 3599999999
Q ss_pred EecCCCEEEEEEccCCCCC-hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCc----------cccCCe------eEEee
Q 001014 930 ITTSGDVYLLEANPRASRT-VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTK----------EVIPKH------VSVKE 991 (1190)
Q Consensus 930 ~d~~g~~~viEiNpR~~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~----------~~~~~~------~~vk~ 991 (1190)
++.+++++|||+|+|+++. ...+...++.|+.+++++++.|+.-. ++.+.. ...+.. ..+.
T Consensus 295 lt~~~GP~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~l~~~~~~~~~~~~~~vv~as~gYp~~~~~~~g~~i~- 373 (486)
T PRK05784 295 LTELWGPTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGKLSKAKIKFNEEPSVVKAIAPLGYPLSRDLASGRRIV- 373 (486)
T ss_pred EecCCCcEEEEEecccCCchHHHHHHhccCCHHHHHHHHHcCCCCCCCeeecCCceEEEEECCCCCCCcccCCCCCEEE-
Confidence 9417779999999999994 32233346669999999999996321 121111 101100 0010
Q ss_pred ccCCC-cccCCCceee-CC-----cccccc----eeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHH
Q 001014 992 AVLPF-EKFQGCDVLL-GP-----EMRSTG----EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIA 1060 (1190)
Q Consensus 992 ~~~~~-~~~~~~~~~l-g~-----~~rs~G----~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~ 1060 (1190)
..+- ..-+++.+.. |+ ...+.| .|++.|+|+++|.++|..+.....-..| .+++.+++.+..|...+
T Consensus 374 -~~~~~~~~~~~~v~~ag~~~~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~-~~yR~DIg~~~~~~~~~ 451 (486)
T PRK05784 374 -VDLDKIKEEGCLVFFGSVELEGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTK-LIYRTDIGSPEYMEYQI 451 (486)
T ss_pred -CCccccccCCCEEEECCceeeCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCC-CCcccccCchHHHHHHH
Confidence 0000 0001111111 22 123333 5788999999999999999876423344 67799999999999999
Q ss_pred HHHHHCCCeeeeccccHHHHHHcCCceEEEecc
Q 001014 1061 KAFLDIGFKIVSTSGTAHFLELKGIAVERVLKM 1093 (1190)
Q Consensus 1061 ~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~ 1093 (1190)
++|.++.. .++|.++.|+.-...+|.
T Consensus 452 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 477 (486)
T PRK05784 452 EKAEIVRY-------VYKWREKRGLLGVSADWS 477 (486)
T ss_pred HHHHHHHH-------HHHHHHhcCCcceeEEec
Confidence 99988544 589999999877766664
No 73
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=1.2e-32 Score=325.30 Aligned_cols=374 Identities=18% Similarity=0.189 Sum_probs=271.2
Q ss_pred EEEcCCccccccccccchHHHHHHHHHHHCC--CeEEEEccCCCCCCCCccCcceEEE---CCCCHHHHHHHHHHcCCCE
Q 001014 96 LILGAGPIVIGQACEFDYSGTQACKALKEEG--YEVILINSNPATIMTDPGLADRTYI---TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 96 LIiG~G~~~ig~~~E~d~sg~~~~~al~~~G--~~vi~v~~~~~~~~~~~~~ad~~~i---~p~~~~~v~~i~~~~~~d~ 170 (1190)
||||+| ++|| .++++|++.. .++++...|+.... .+....+ ...|.+.+.++++++++|+
T Consensus 1 lviG~g------greh-----al~~~l~~s~~~~~~~~~pgn~g~~~----~~~~~~vp~~~~~d~~~l~~~a~~~~id~ 65 (434)
T PLN02257 1 LVIGGG------GREH-----ALCYALQRSPSCDAVFCAPGNAGIAT----SGDATCVPDLDISDSAAVISFCRKWGVGL 65 (434)
T ss_pred CEEccc------HHHH-----HHHHHHHhCCCCCEEEECCCCHHHhh----hccceeecCCCCCCHHHHHHHHHHcCCCE
Confidence 799999 7898 8999998875 45666655554321 1222222 4468889999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+++.+. .+.. .+ .+.|+..|++++||+.++++++.||..+|++|+++|||+|++..+++.+++.+++++++ |
T Consensus 66 vvvg~E~--~lv~--~~--~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g-~ 138 (434)
T PLN02257 66 VVVGPEA--PLVA--GL--ADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQG-A 138 (434)
T ss_pred EEECCch--HHHH--HH--HHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC-C
Confidence 9988762 2211 22 34688899999999999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeee---
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENV--- 323 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~--- 323 (1190)
|+||||..+++|+|+.++++.+|+.+++..++.. ....+++|||||.| +|+++.++.|+. .++.+...+.+
T Consensus 139 PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~~~dhkr~ 216 (434)
T PLN02257 139 PIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLESAQDHKRV 216 (434)
T ss_pred CEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEeeeecccc
Confidence 9999999999999999999999999999886532 11458999999999 799999998743 45544444322
Q ss_pred -CC-CCcccccEEEEecCCCCCHHHHHHH-HHHHHHH---HHHhCCc-cceEEEEEEEecCCCcEEEEEeCCCCCCc-hH
Q 001014 324 -DP-MGVHTGDSITVAPAQTLTDKEYQRL-RDYSIAI---IREIGVE-CGGSNVQFAVNPVDGEVMVIEMNPRVSRS-SA 395 (1190)
Q Consensus 324 -~~-~g~~~g~~~~~~Pa~~l~~~~~~~l-~~~a~~i---~~~lg~~-~G~~~vef~~~~~~g~~~viEiNpR~~gs-~~ 395 (1190)
+. .|+++|.+..++|++.++++..+++ ++.+.++ +++.|+. +|++++||++++++|++||+|+|+|++.. ..
T Consensus 217 ~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~ 296 (434)
T PLN02257 217 GDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQ 296 (434)
T ss_pred cCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchh
Confidence 21 4777888888888877999888875 4444444 4455532 49999999998337789999999999975 33
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCcc-cc-----C---CcCeEEeeec----------eeeecccCCCC
Q 001014 396 LASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPAS-FE-----P---SIDYVVTKIP----------RFAFEKFPGSE 456 (1190)
Q Consensus 396 l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~~-f~-----p---~~~~v~~k~p----------~~~~~~~~~~~ 456 (1190)
.....++.|+.+.+++++.|. |+.+...+......+ .. | ..+..+..++ .|+-..-...+
T Consensus 297 ~~l~~l~~Dl~~~~~~~~~g~-l~~~~~~~~~~~av~vv~a~~gYp~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~ 375 (434)
T PLN02257 297 VLMMRLESDLAQVLLAACKGE-LSGVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSD 375 (434)
T ss_pred eEehhhcCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEcCCCCCCCCCCCCEeeCCccccccCCCCEEEECCceEccC
Confidence 334458999999999999995 222222121111110 00 1 1111111111 11110001123
Q ss_pred cccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 457 PLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 457 ~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
..+-+...++..|++.|.|++||.++|+++++ +.+.|.
T Consensus 376 ~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 414 (434)
T PLN02257 376 GNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGG 414 (434)
T ss_pred CEEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 45667788899999999999999999999997 565553
No 74
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=4.6e-33 Score=332.15 Aligned_cols=375 Identities=16% Similarity=0.212 Sum_probs=267.4
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
||||||+|.. ...+++++++. |+.++.+++. ...... .++..+.++.+.+.++++++++++|+|+
T Consensus 2 kvliiG~G~~-----------~~~l~~~l~~~~~~~~i~~~~~--n~g~~~-~~~~~~~~~~d~~~l~~~~~~~~id~vi 67 (420)
T PRK00885 2 KVLVIGSGGR-----------EHALAWKLAQSPLVEKVYVAPG--NAGTAL-LAENVVIDVTDIEALVAFAKEEGIDLTV 67 (420)
T ss_pred EEEEECCCHH-----------HHHHHHHHHhCCCCCEEEEeCC--CHHHHh-hccccCCCCCCHHHHHHHHHHhCCCEEE
Confidence 8999999973 33468888775 5556665442 222221 1233445678899999999999999999
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHH
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAK 803 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~ 803 (1190)
+..+......++..++ +.| ++++|++++++.+++||..++++|+++|||+|++..+.+.+++.++++
T Consensus 68 ~~~e~~l~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~ 134 (420)
T PRK00885 68 VGPEAPLVAGIVDAFR----------AAG---LPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLD 134 (420)
T ss_pred ECCchHHHHHHHHHHH----------HCC---CcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHH
Confidence 7665444446667777 889 999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee
Q 001014 804 EIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH 879 (1190)
Q Consensus 804 ~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~ 879 (1190)
+++||+||||..++||+|+.+++|.+|+.++++.+.... ...++|||+|| .|.|++|++++|++ .+..+++.+.
T Consensus 135 ~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i-~G~E~sv~~~~~g~-~~~~~~~~~~ 212 (420)
T PRK00885 135 EKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFL-DGEEASFFAFVDGE-NVLPLPTAQD 212 (420)
T ss_pred HcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEcc-CCcEEEEEEEECCC-ceEeceeeEe
Confidence 999999999999999999999999999999999875421 23579999999 78999999999864 6666666554
Q ss_pred eec-----ccccccccccccCCCCCCHHHHHHHHH-HHHHHHHHc---C--CCcceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 880 IEQ-----AGVHSGDSACMIPTKTISSSCLDTISS-WTIKLAKRL---N--VCGLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 880 ~~~-----~g~~~gd~~~~~p~~~l~~~~~~~i~~-~a~~i~~~L---g--~~G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
... .+.+.|......|++.++++..+++.+ ++++++++| | ++|++++||+++ ++++||+|+|||+|++
T Consensus 213 ~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t-~~g~~viEin~R~g~~ 291 (420)
T PRK00885 213 HKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMIT-KDGPKVIEFNARFGDP 291 (420)
T ss_pred eeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEE-CCCcEEEEEecccCCc
Confidence 322 134455444555776688887777765 666666653 4 579999999994 5669999999999986
Q ss_pred -hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCccccCCeeEEeeccCCCcc-----cCCCc-----eee--CCc-----
Q 001014 949 -VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTKEVIPKHVSVKEAVLPFEK-----FQGCD-----VLL--GPE----- 1009 (1190)
Q Consensus 949 -~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~~~~~~~~~vk~~~~~~~~-----~~~~~-----~~l--g~~----- 1009 (1190)
...+...++.|+.+.+++++.|.... +..+...... .+.....-+|... ..+.+ .+. |..
T Consensus 292 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~~~a~-~~~~~~~gy~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 370 (420)
T PRK00885 292 ETQVVLPRLKSDLVELLLAAADGKLDEVELEWDDRAAV-GVVLAAKGYPGDYRKGDVITGLEAADADKVFHAGTKLEDGK 370 (420)
T ss_pred cHHhhhhhccCCHHHHHHHHHcCCCCCCCceECCCcEE-EEEEeCCCCCCCCCCCCEeecccccCCCEEEECceeccCCe
Confidence 22334556779999999999996542 1111111000 0000000111110 01100 000 111
Q ss_pred cc----ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCC
Q 001014 1010 MR----STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLT 1052 (1190)
Q Consensus 1010 ~r----s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~ 1052 (1190)
.. ..|.|++.|+|++||..+|+.+.... -..| .+++.+++.
T Consensus 371 ~~~~g~R~~~vi~~g~t~~eA~~~a~~~~~~i-~~~~-~~~r~dig~ 415 (420)
T PRK00885 371 LVTNGGRVLCVTALGDTLEEAQKRAYAALDKI-DFDG-GFYRRDIGY 415 (420)
T ss_pred EEEeCCEEEEEEEecCCHHHHHHHHHHHHhcc-CCCC-CEeechhhh
Confidence 11 24578999999999999999988753 2334 666766654
No 75
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=5.5e-33 Score=332.44 Aligned_cols=374 Identities=17% Similarity=0.233 Sum_probs=264.7
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCC-cceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTS-DRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~a-d~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
||||||+|+. +.+++++++++|+.+.++.. |..+....... +....++.+.+.++++++++++|+|+
T Consensus 2 kiliiG~G~~-----------~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~vi 69 (423)
T TIGR00877 2 KVLVIGNGGR-----------EHALAWKLAQSPLVKYVYVA-PGNAGTARLAKNKNVAISITDIEALVEFAKKKKIDLAV 69 (423)
T ss_pred EEEEECCChH-----------HHHHHHHHHhCCCccEEEEE-CCCHHHhhhcccccccCCCCCHHHHHHHHHHhCCCEEE
Confidence 8999999994 56669999999865444422 22122211111 12234667899999999999999999
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHH
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAK 803 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~ 803 (1190)
+..+......+++.++ +.| ++++|++++++++++||..++++|+++|||+|++..+.+.+++.++++
T Consensus 70 ~~~e~~l~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~ 136 (423)
T TIGR00877 70 IGPEAPLVLGLVDALE----------EAG---IPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQ 136 (423)
T ss_pred ECCchHHHHHHHHHHH----------HCC---CeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHH
Confidence 8665444445677777 889 999999999999999999999999999999999999999999999999
Q ss_pred HhCCc-EEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC---CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee
Q 001014 804 EIGYP-VVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD---PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH 879 (1190)
Q Consensus 804 ~igyP-vvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~---~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~ 879 (1190)
++||| +|+||..+.||+|+.+++|.+|+.++++.+.... ...+++||+|| .|.|++|++++|+. .+..+++.+.
T Consensus 137 ~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i-~G~E~sv~~~~dg~-~~~~~~~~~~ 214 (423)
T TIGR00877 137 EKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFL-DGEEVSLLAFVDGK-TVIPMPPAQD 214 (423)
T ss_pred hcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECc-cCceEEEEEEEcCC-eEEeceeeee
Confidence 99999 9999999999999999999999999988865432 23579999999 68999999999854 6666666554
Q ss_pred eec-----ccccccccccccCCCCCCHHHHHHH-HHHHHHHHHHc---C--CCcceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 880 IEQ-----AGVHSGDSACMIPTKTISSSCLDTI-SSWTIKLAKRL---N--VCGLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 880 ~~~-----~g~~~gd~~~~~p~~~l~~~~~~~i-~~~a~~i~~~L---g--~~G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
... .+.+.|......|++.++++..+++ .+++.+++++| | ++|++++||+++.+ ++||+|+|||++++
T Consensus 215 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~-g~~viEin~R~g~~ 293 (423)
T TIGR00877 215 HKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKE-GPKVLEFNCRFGDP 293 (423)
T ss_pred eeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECC-CcEEEEEEccCCCc
Confidence 322 2344444334446556777665553 44555555555 3 67999999999544 59999999999986
Q ss_pred hhh-hhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEe----eccCCCc-------------ccCCCceee-CC-
Q 001014 949 VPF-VSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVK----EAVLPFE-------------KFQGCDVLL-GP- 1008 (1190)
Q Consensus 949 ~~~-~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk----~~~~~~~-------------~~~~~~~~l-g~- 1008 (1190)
... +....++|+.+.+++++.|.. +++.... .+..++. .+-+|.. ..++..... +.
T Consensus 294 ~~~~~~~~~~~dl~~~~~~~~~g~l-~~~~~~~---~~~~a~~~~~~~~~yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 369 (423)
T TIGR00877 294 ETQAVLPLLKSDLLEVCLAAVEGKL-DEVELRF---DNRAAVTVVLASEGYPGDYRKGDPITGEPLIEAEGVKVFHAGTK 369 (423)
T ss_pred cceeEecccCCCHHHHHHHHHcCCC-CCCCceE---CCCceEEEEEecCCcCCCCCCCCEeeCCcccccCCCEEEECcee
Confidence 443 234467999999999999952 2211110 0111111 0111110 011211111 11
Q ss_pred ----cc----cccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCC
Q 001014 1009 ----EM----RSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLT 1052 (1190)
Q Consensus 1009 ----~~----rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~ 1052 (1190)
+. -..|.|++.|.|.++|..+|..+... +...| ++++.+++.
T Consensus 370 ~~~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~-i~~~~-~~~r~dig~ 419 (423)
T TIGR00877 370 QDNGKLVTSGGRVLAVTALGKSLEEARERAYEAVEY-IKFEG-MFYRKDIGF 419 (423)
T ss_pred ccCCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhc-CCCCC-CEEecccch
Confidence 11 12457899999999999999998875 33444 777877765
No 76
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.7e-32 Score=353.01 Aligned_cols=370 Identities=16% Similarity=0.237 Sum_probs=279.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHc-CCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKE-RPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~-~~d~ 170 (1190)
|+|++|+++.... |..++++++++||+|+++++++.........++..+ .+..+.+.+.+.+++. .+++
T Consensus 3 ~~~~~ie~~~~~~---------g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~ 73 (887)
T PRK02186 3 GIFVFIESNTTGT---------GELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAG 73 (887)
T ss_pred cEEEEEcCCCCcc---------HHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 6899999987543 678999999999999999887654322222344444 4556888999988876 6799
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|++..+ .....+. .+.+.+|++ |++++++..++||..||++|+++|+|+|++..+++.+++.++.+.++ |
T Consensus 74 V~~~se--~~v~~aa-----~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~-~ 143 (887)
T PRK02186 74 IMSSSE--YFIEVAS-----EVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLT-Y 143 (887)
T ss_pred EEeCch--hhHHHHH-----HHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCC-C
Confidence 998754 3333332 345667766 78999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCccc
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~ 330 (1190)
|+||||..+.||.|+.+|+|.+|+.++++.+... ...+++|||||+| +||+++++.+.+ ++.+.+..+.....+.+.
T Consensus 144 PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-~~~~~lvEEfI~G-~E~sVe~i~~~g-~~~i~~i~~k~~~~~~~~ 220 (887)
T PRK02186 144 PVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYVEG-DEYSVETLTVAR-GHQVLGITRKHLGPPPHF 220 (887)
T ss_pred CEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-CCCcEEEeecccC-CcEEEEEEEECC-cEEEEEEEeeecCCCCCe
Confidence 9999999999999999999999999999877653 3568999999999 999999998754 444444443322112222
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCch--HHHHHHhCCCHHHH
Q 001014 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSS--ALASKATGFPIAKM 408 (1190)
Q Consensus 331 g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~--~l~~~atG~~l~~~ 408 (1190)
.......|+. ++++..+++.+.+.+++++||+.+|++|+||+++ ++++||||||||++|+. .++..++|+|+++.
T Consensus 221 ve~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t--~~g~~liEIn~R~~G~~i~~li~~a~Gvd~~~~ 297 (887)
T PRK02186 221 VEIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR--GDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDH 297 (887)
T ss_pred EEeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEE--CCCEEEEEECCCCCCccHHHHHHHHHCcCHHHH
Confidence 2333457887 9999999999999999999999779999999999 56799999999999973 57899999999999
Q ss_pred HHHHHcCCCCCCCCccccCCCC-ccccCCcCeEEeee----------ceeee--cccCCCCc-ccCCCCCcEEEEEEEeC
Q 001014 409 AAKLSVGYSLDQIPNDITKKTP-ASFEPSIDYVVTKI----------PRFAF--EKFPGSEP-LLTTQMKSVGEAMALGR 474 (1190)
Q Consensus 409 ~~~~alG~~l~~~~~~i~~~~~-~~f~p~~~~v~~k~----------p~~~~--~~~~~~~~-~l~~~~~s~G~v~a~G~ 474 (1190)
+++.++|.++...+.. .+... ..+.|..+.++..+ |.+.+ ..-+|... ..+...+++|+|++.|+
T Consensus 298 ~i~~~lG~~~~~~~~~-~~~~ai~~~~~~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~g~vi~~g~ 376 (887)
T PRK02186 298 VIDLHLGVAAFADPTA-KRYGAIRFVLPARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRIAAVVCAGD 376 (887)
T ss_pred HHHHhCCCCCCCCCCC-CCeEEEEEEecCCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCccEEEEEEcC
Confidence 9999999887643321 11111 11223222222222 11111 12223321 22334567999999999
Q ss_pred CHHHHHHHHHHhhh
Q 001014 475 TFQESFQKALRSLE 488 (1190)
Q Consensus 475 ~~~ea~~ka~~~l~ 488 (1190)
|.+++.+++.++.+
T Consensus 377 ~~~e~~~~~~~~~~ 390 (887)
T PRK02186 377 HRDSVAAAAERAVA 390 (887)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
No 77
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.3e-32 Score=311.75 Aligned_cols=281 Identities=20% Similarity=0.270 Sum_probs=229.5
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~ 168 (1190)
++||+|+.||. +.|++ .||..++++|++.||+++.++.+... +..-+.+.++
T Consensus 3 ~~~i~vl~gg~-----s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~--------------------~~~~l~~~~~ 57 (296)
T PRK14569 3 NEKIVVLYGGD-----SPEREVSLKSGKAVLDSLISQGYDAVGVDASGKE--------------------LVAKLLELKP 57 (296)
T ss_pred CcEEEEEeCCC-----CCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchh--------------------HHHHhhccCC
Confidence 45899999985 89999 57999999999999999999753211 1112334589
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
|.+++.++|..+++..+ +++|+.+|+|++|++++++.++.||..+|++|+++|||+|++..+.+.. ...+.++
T Consensus 58 d~vf~~lhG~~ge~~~i----~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~ 130 (296)
T PRK14569 58 DKCFVALHGEDGENGRV----SALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEIS 130 (296)
T ss_pred CEEEEeCCCCCCCChHH----HHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhcC
Confidence 99999999999999887 8899999999999999999999999999999999999999998776422 2346789
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE-eeeeeCCCC
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC-SIENVDPMG 327 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~-~~e~~~~~g 327 (1190)
||+||||+.+++|.|+.+|+|.+||..+++.+... +++|||+||+| +|+++.++.+.....+.+. ..+.+++..
T Consensus 131 -~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~---~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~~~~~ 205 (296)
T PRK14569 131 -FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFYDYES 205 (296)
T ss_pred -CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhc---CCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcCChhh
Confidence 99999999999999999999999999999886533 47999999999 9999999865332222222 223344333
Q ss_pred cccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc----hHHHHHHhCC
Q 001014 328 VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS----SALASKATGF 403 (1190)
Q Consensus 328 ~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs----~~l~~~atG~ 403 (1190)
.+.+.+....|+. ++++..+++++.+.+++++||++ |+++|||++++ +|++||+|||||++-+ .+....+.|+
T Consensus 206 k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~-G~~rvD~~~~~-~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~ 282 (296)
T PRK14569 206 KYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCS-GHARVDFIYDD-RGNFYIMEINSSPGMTDNSLSPKSAAAEGV 282 (296)
T ss_pred ccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-eEEEEEEEEcC-CCCEEEEEeeCCCCCCCcCHHHHHHHHcCC
Confidence 3457777788987 89999999999999999999997 99999999986 7899999999988742 3456667888
Q ss_pred CHHHHHHHH
Q 001014 404 PIAKMAAKL 412 (1190)
Q Consensus 404 ~l~~~~~~~ 412 (1190)
++.++..++
T Consensus 283 ~~~~li~~i 291 (296)
T PRK14569 283 DFDSFVKRI 291 (296)
T ss_pred CHHHHHHHH
Confidence 888876654
No 78
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=315.90 Aligned_cols=290 Identities=24% Similarity=0.339 Sum_probs=238.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHC--CCeEEEEccCCCCCCCCccCcceEEECCC--C---HHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVILINSNPATIMTDPGLADRTYITPM--T---PELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~i~p~--~---~~~v~~i~~ 164 (1190)
|+||||+|+|.. .+++++|++. |++|++++.++..+. ...+|+.|..|. + .+.+.++++
T Consensus 1 ~~~vLv~g~~~~------------~~~~~~l~~~~~g~~vi~~d~~~~~~~--~~~~d~~~~~p~~~~~~~~~~l~~~~~ 66 (326)
T PRK12767 1 MMNILVTSAGRR------------VQLVKALKKSLLKGRVIGADISELAPA--LYFADKFYVVPKVTDPNYIDRLLDICK 66 (326)
T ss_pred CceEEEecCCcc------------HHHHHHHHHhccCCEEEEECCCCcchh--hHhccCcEecCCCCChhHHHHHHHHHH
Confidence 359999999853 2689999999 499999999877655 456787776663 2 367889999
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHH--
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECIS-- 242 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~-- 242 (1190)
++++|+|+|+.+....... .....++..|+++++++++++++++||..|+++|+++|+|+|++..+++.+++.+
T Consensus 67 ~~~id~ii~~~d~~~~~~a----~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~ 142 (326)
T PRK12767 67 KEKIDLLIPLIDPELPLLA----QNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAAL 142 (326)
T ss_pred HhCCCEEEECCcHHHHHHH----HHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhh
Confidence 9999999998874432211 1245678889999999999999999999999999999999999999999998887
Q ss_pred HHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeee
Q 001014 243 IANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIEN 322 (1190)
Q Consensus 243 ~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~ 322 (1190)
+...++ ||+|+||..+.+|.|+.+++|.+|+.+++... .+++|||||.| +|++++++.+.+|+++.++..++
T Consensus 143 ~~~~~~-~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~~ 214 (326)
T PRK12767 143 AKGELQ-FPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKR 214 (326)
T ss_pred hcccCC-CCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEeee
Confidence 557789 99999999999999999999999999988762 38999999999 99999999987788887776665
Q ss_pred eCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhC
Q 001014 323 VDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATG 402 (1190)
Q Consensus 323 ~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG 402 (1190)
....+ |....... .. .+++++.+.+++++||+ +|++++||+++ +|++|+||+|||++|+..+ ..++|
T Consensus 215 ~~~~~---g~~~~~~~---~~---~~~i~~~~~~i~~~lg~-~G~~~vd~~~~--~g~~~viEiNpR~~g~~~~-~~~~G 281 (326)
T PRK12767 215 IEVRA---GETSKGVT---VK---DPELFKLAERLAEALGA-RGPLNIQCFVT--DGEPYLFEINPRFGGGYPL-SYMAG 281 (326)
T ss_pred eeecC---CceeEEEE---cC---CHHHHHHHHHHHHhcCC-eeeEEEEEEEE--CCeEEEEEEeCCCCCcchh-hHhhC
Confidence 43221 22211111 11 25789999999999999 59999999999 5789999999999998764 56799
Q ss_pred CCHHHHHHHHHcCCCCCC
Q 001014 403 FPIAKMAAKLSVGYSLDQ 420 (1190)
Q Consensus 403 ~~l~~~~~~~alG~~l~~ 420 (1190)
+|+++.+++.++|.+++.
T Consensus 282 ~n~~~~~~~~~~g~~~~~ 299 (326)
T PRK12767 282 ANEPDWIIRNLLGGENEP 299 (326)
T ss_pred CCHHHHHHHHHcCCCCCc
Confidence 999999999999998753
No 79
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-31 Score=295.68 Aligned_cols=371 Identities=22% Similarity=0.260 Sum_probs=283.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCC--CeEEEEccCCCCCCCCccCcceEEECC--CCHHHHHHHHHHcCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEG--YEVILINSNPATIMTDPGLADRTYITP--MTPELVEQVLEKERP 168 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G--~~vi~v~~~~~~~~~~~~~ad~~~i~p--~~~~~v~~i~~~~~~ 168 (1190)
+||||||+| ++|| .++++|.+.+ .++++..-|+.... .+...-.+ .+.+.+.+++++.++
T Consensus 1 mkVLviGsG------gREH-----AiA~~la~s~~v~~~~~apgN~G~a~-----~~~~~~~~~~~~~~~lv~fA~~~~i 64 (428)
T COG0151 1 MKVLVIGSG------GREH-----ALAWKLAQSPLVLYVYVAPGNPGTAL-----EAYLVNIEIDTDHEALVAFAKEKNV 64 (428)
T ss_pred CeEEEEcCC------chHH-----HHHHHHhcCCceeEEEEeCCCCccch-----hhhhccCccccCHHHHHHHHHHcCC
Confidence 489999999 8998 8889998876 34444444554321 11111112 458999999999999
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
|.++++.+ .++...+ .+.|++.|++++||+.+++++..+|..+|++|+++|||++.|..+++.+++.+++++.|
T Consensus 65 dl~vVGPE--~pL~~Gv----vD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g 138 (428)
T COG0151 65 DLVVVGPE--APLVAGV----VDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKG 138 (428)
T ss_pred CEEEECCc--HHHhhhh----HHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcC
Confidence 99998877 5555555 56899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeC
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVD 324 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~ 324 (1190)
.|+||||....+|+||.++.+.+|..+++.+++.. +....++||||+.| .|+|+.++.|+. +++.++..|++.
T Consensus 139 -~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p~aQDhK 215 (428)
T COG0151 139 -APIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMPTAQDHK 215 (428)
T ss_pred -CCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEECccccccc
Confidence 99999999999999999999999999999888755 33467999999999 999999999854 677777777765
Q ss_pred C-----CCcccccEEEEecCCCCCHHHHHHHH-HHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 325 P-----MGVHTGDSITVAPAQTLTDKEYQRLR-DYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 325 ~-----~g~~~g~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
. .|++||.+..++|++.++++..+++. ++....++.+ .++ |++..+|++++ +| |+|||.|.||+.-
T Consensus 216 ra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~-GvLy~glMlt~-~G-PkViEfN~RFGDP 292 (428)
T COG0151 216 RAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFR-GVLYAGLMLTA-DG-PKVIEFNARFGDP 292 (428)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCce-EEEEeEEEEcC-CC-cEEEEEecccCCh
Confidence 4 38999999999999999999888877 6677677666 475 99999999996 44 9999999999993
Q ss_pred -hHHHHHHhCCCHHHHHHHHHcCCCCCCC----Ccc-cc-------CCCCccccCCcCeEEeeec--------eeeeccc
Q 001014 394 -SALASKATGFPIAKMAAKLSVGYSLDQI----PND-IT-------KKTPASFEPSIDYVVTKIP--------RFAFEKF 452 (1190)
Q Consensus 394 -~~l~~~atG~~l~~~~~~~alG~~l~~~----~~~-i~-------~~~~~~f~p~~~~v~~k~p--------~~~~~~~ 452 (1190)
...+-...--||.+.+...+-|. |.+. .++ .+ ...|.. |..+..+.-.+ .|.-..-
T Consensus 293 Etq~vL~~l~sdl~~~~~a~~~g~-L~~~~~~~~~~~a~v~vvlA~~GYP~~--~~kG~~I~~~~~~~~~~~~vf~Agv~ 369 (428)
T COG0151 293 ETQVVLPLLESDLVELLLAAVDGK-LDEVEILFWDKGAAVGVVLAAEGYPGD--PEKGDVITGDEEAEEEGAKVFHAGVK 369 (428)
T ss_pred hHHHHHHhccccHHHHHHHHHhCC-ccccchhhccCCceEEEEEecCCCCCC--CCCCCEEecChhhcccCcEEEEeeEe
Confidence 33333445669999999888773 2221 111 10 112222 33333222111 1111111
Q ss_pred CCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 453 PGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 453 ~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
...+..+-|...++=.|+++|+|.+||.++|+++++ ....|.
T Consensus 370 ~~~~~~lvt~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~ 412 (428)
T COG0151 370 LDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGL 412 (428)
T ss_pred ccCCceEEecCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCc
Confidence 111224667777889999999999999999999997 555454
No 80
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=2.8e-32 Score=314.35 Aligned_cols=303 Identities=21% Similarity=0.304 Sum_probs=234.7
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE----CCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI----TPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i----~p~~~~~v~~i~~ 164 (1190)
++||+||-||. +.||| .||..++++|++.||+|+.++.+.+..+........... .+.+.+ +....+
T Consensus 3 ~~~i~vl~GG~-----S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (333)
T PRK01966 3 KMRVALLFGGR-----SAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDDNDKEDLS-LLILPS 76 (333)
T ss_pred CcEEEEEeCCC-----CCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhcccccccccccc-hhcccc
Confidence 46899999986 89999 469999999999999999998766421100000000000 000000 000111
Q ss_pred Hc--CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHH---
Q 001014 165 KE--RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDE--- 239 (1190)
Q Consensus 165 ~~--~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e--- 239 (1190)
.. ++|+|+|.++|..+++..+ +++|+.+|++++|++..+..++.||..+|++|+++|||+|++..+.+.++
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~i----q~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTI----QGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHH----HHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccccchh
Confidence 22 7999999999999999887 89999999999999999999999999999999999999999998876554
Q ss_pred -HHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE
Q 001014 240 -CISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 240 -~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
...+.+.++ ||+||||..+++|.|+.+|++.+||.++++.++.. +..++||+||+| +|+++.++.+ ++.+....
T Consensus 153 ~~~~~~~~~~-~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~~ 227 (333)
T PRK01966 153 SLAEIEAKLG-LPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY--DRKVLVEQGIKG-REIECAVLGN-DPKASVPG 227 (333)
T ss_pred hHHHHHHhcC-CCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCcCC-EEEEEEEECC-CCeEcccE
Confidence 245567899 99999999999999999999999999999988766 468999999999 9999999986 33322211
Q ss_pred ee----eeeCC-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 319 SI----ENVDP-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 319 ~~----e~~~~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
.. +.+++ .++..+.+....|+. ++++..+++++++.+++++||++ |+++|||++++ +|++||+||||+++-+
T Consensus 228 ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G~~rvDf~~~~-~g~~~vlEiNt~Pg~t 304 (333)
T PRK01966 228 EIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCS-GLARVDFFLTE-DGEIYLNEINTMPGFT 304 (333)
T ss_pred EEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-ceEEEEEEEcC-CCCEEEEEeeCCCCCC
Confidence 11 12222 134445566778987 99999999999999999999997 99999999987 7889999999777743
Q ss_pred ----hHHHHHHhCCCHHHHHHHH
Q 001014 394 ----SALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 394 ----~~l~~~atG~~l~~~~~~~ 412 (1190)
.+...+++|+++.+..-++
T Consensus 305 ~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 305 PISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred cccHHHHHHHHcCCCHHHHHHHH
Confidence 2345667888888776554
No 81
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=298.07 Aligned_cols=378 Identities=17% Similarity=0.229 Sum_probs=282.0
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCC--CeEEEecCCCCCcCccccCCcceeecC--CcHHHHHHHhhhcCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG--YETIMMNSNPETVSTDYDTSDRLYFEP--LTVEDVLNVIDLERPE 720 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G--~~vi~v~~~p~~~s~~~~~ad~~~~~p--~~~e~v~~i~~~~~~d 720 (1190)
||||||+|. ..+.+ ++++.+.+ .++++...||.+....+ ..-.+ .+.+.+.+++++.++|
T Consensus 2 kVLviGsGg--REHAi---------A~~la~s~~v~~~~~apgN~G~a~~~~-----~~~~~~~~~~~~lv~fA~~~~id 65 (428)
T COG0151 2 KVLVIGSGG--REHAL---------AWKLAQSPLVLYVYVAPGNPGTALEAY-----LVNIEIDTDHEALVAFAKEKNVD 65 (428)
T ss_pred eEEEEcCCc--hHHHH---------HHHHhcCCceeEEEEeCCCCccchhhh-----hccCccccCHHHHHHHHHHcCCC
Confidence 799999999 34444 77777655 56777777776644221 11223 3589999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
.+++..+......+++.++ +.| ++++||+.++.++..+|.++|++|+++|||++.|..+++.+++.+
T Consensus 66 l~vVGPE~pL~~GvvD~l~----------~~G---i~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~a 132 (428)
T COG0151 66 LVVVGPEAPLVAGVVDALR----------AAG---IPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKA 132 (428)
T ss_pred EEEECCcHHHhhhhHHHHH----------HCC---CceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHH
Confidence 9998777667778999999 999 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEecCCCcEEEEe-
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALADSCGNVVIGG- 875 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~- 875 (1190)
++++.|.|+||||..-.+|+||.++.+.++..+++++.+.. .....++||+|+ .|.|+++.+++|++ +++.++
T Consensus 133 yi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL-~GeE~S~~a~~DG~-~v~p~p~ 210 (428)
T COG0151 133 YIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFL-DGEEFSLQAFVDGK-TVIPMPT 210 (428)
T ss_pred HHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecc-cceEEEEEEEEcCC-eEEECcc
Confidence 99999999999999999999999999999999998876544 233569999999 99999999999987 554444
Q ss_pred eeeeee----cccccccccccccCCCCCCHHHHHHHH-HHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccCC
Q 001014 876 IMEHIE----QAGVHSGDSACMIPTKTISSSCLDTIS-SWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 876 i~e~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~-~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
.++|.. ..|...|......|++.+++++.+++. ++.+..++.| .|+|++..+||++.+ +|+|||+|.||
T Consensus 211 aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~-GPkViEfN~RF 289 (428)
T COG0151 211 AQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTAD-GPKVIEFNARF 289 (428)
T ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCC-CcEEEEEeccc
Confidence 445542 235566666666688899999888887 7777777776 478999999999544 49999999999
Q ss_pred CCC-hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCccccCCeeEEeeccCCCcccCCC-------------ceee-CCc
Q 001014 946 SRT-VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTKEVIPKHVSVKEAVLPFEKFQGC-------------DVLL-GPE 1009 (1190)
Q Consensus 946 ~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~~~~~~~~~vk~~~~~~~~~~~~-------------~~~l-g~~ 1009 (1190)
+.- ...+......||.+++..++.|.... +..+......-.+++-..-+|.+.-+|. .+.. |..
T Consensus 290 GDPEtq~vL~~l~sdl~~~~~a~~~g~L~~~~~~~~~~~a~v~vvlA~~GYP~~~~kG~~I~~~~~~~~~~~~vf~Agv~ 369 (428)
T COG0151 290 GDPETQVVLPLLESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEEEGAKVFHAGVK 369 (428)
T ss_pred CChhHHHHHHhccccHHHHHHHHHhCCccccchhhccCCceEEEEEecCCCCCCCCCCCEEecChhhcccCcEEEEeeEe
Confidence 993 33445557889999999999995433 1111100000001111111233322221 1111 221
Q ss_pred ------ccccc----eeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHH
Q 001014 1010 ------MRSTG----EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHL 1056 (1190)
Q Consensus 1010 ------~rs~G----~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~ 1056 (1190)
..+.| .|++.|+|++||..+|+.+.... ... .+|++.+++.+...
T Consensus 370 ~~~~~~lvt~GgRvL~v~~~g~t~~eA~~~ay~~~~~i-~~~-g~~yRkDIG~~a~~ 424 (428)
T COG0151 370 LDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKI-HFD-GLFYRKDIGSRALE 424 (428)
T ss_pred ccCCceEEecCCeEEEEEecCCCHHHHHHHHHHHHhhc-CCC-Cceeecccchhhhh
Confidence 22333 57789999999999999998753 233 38889888876543
No 82
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=2.5e-31 Score=311.09 Aligned_cols=330 Identities=15% Similarity=0.148 Sum_probs=248.1
Q ss_pred ECCCCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 151 ITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 151 i~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
+...|.+.+.++++++++|+|+++.+... .. .+ .+.|++.|++++|+++++++++.||..+|++|+++|||+|+
T Consensus 11 ~~~~d~~~l~~~~~~~~id~vi~g~E~~l--~~--~~--~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~ 84 (379)
T PRK13790 11 ISESDHQAILDFAKQQNVDWVVIGPEQPL--ID--GL--ADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTAD 84 (379)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCcHHH--HH--HH--HHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence 34457899999999999999999887422 22 22 45788899999999999999999999999999999999999
Q ss_pred eeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeC
Q 001014 231 SGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDL 310 (1190)
Q Consensus 231 ~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~ 310 (1190)
+..+.+.+++.+++++++ ||+||||+.+++|+|+.+|+|.+|+.++++.++.....+.++|||||+| +|+++.++.++
T Consensus 85 ~~~~~~~~ea~~~~~~~g-~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g 162 (379)
T PRK13790 85 YKEVERKKDALTYIENCE-LPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG-EEFSLMTFVNG 162 (379)
T ss_pred EEEECCHHHHHHHHHhcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC-ceEEEEEEeeC
Confidence 999999999999999999 9999999999999999999999999999998774443568999999999 99999999874
Q ss_pred CCcEEEE-Eeeee----eC-CCCcccccEEEEecCCCCCHHHHHHH-HHHHHHHHHHh---CCc-cceEEEEEEEecCCC
Q 001014 311 ADNVVII-CSIEN----VD-PMGVHTGDSITVAPAQTLTDKEYQRL-RDYSIAIIREI---GVE-CGGSNVQFAVNPVDG 379 (1190)
Q Consensus 311 ~g~~~~~-~~~e~----~~-~~g~~~g~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~~l---g~~-~G~~~vef~~~~~~g 379 (1190)
+ ..+.+ +..+. ++ ..++++|.+...+|++.++++..+++ .+++.+++++| |+. +|++|+||++++ +
T Consensus 163 ~-~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~--~ 239 (379)
T PRK13790 163 D-LAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK--D 239 (379)
T ss_pred C-EEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC--C
Confidence 4 23322 33322 22 24778888888889876888776665 67777777777 442 599999999984 4
Q ss_pred cEEEEEeCCCCCCc-hHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc--------CCCCccccCCcCeEEeeeceeeec
Q 001014 380 EVMVIEMNPRVSRS-SALASKATGFPIAKMAAKLSVGYSLDQIPNDIT--------KKTPASFEPSIDYVVTKIPRFAFE 450 (1190)
Q Consensus 380 ~~~viEiNpR~~gs-~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~--------~~~~~~f~p~~~~v~~k~p~~~~~ 450 (1190)
++||+|+|+|+++. ...+...+|.|+++.+++.+.|.+++....+-. ...|..+ ..+..+..+|.-...
T Consensus 240 g~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~~~~~~~v~~~s~gyp~~~--~~~~~i~~~~~~~~~ 317 (379)
T PRK13790 240 GPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAY--EKGHKVSGFDLNENY 317 (379)
T ss_pred CeEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeEcCCCEEEEEEccCCCCCCC--CCCCeeeecCCCCeE
Confidence 59999999999883 233445589999999999999976542222111 0111111 112222112200000
Q ss_pred ccCC---CCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccC
Q 001014 451 KFPG---SEPLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSG 493 (1190)
Q Consensus 451 ~~~~---~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g 493 (1190)
.+.+ .+..+-+...+++.|++.|.|++||.++|++.++ ..+.|
T Consensus 318 ~~~~~~~~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~ 364 (379)
T PRK13790 318 FVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDH 364 (379)
T ss_pred EECCccccCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCC
Confidence 1112 1234556667899999999999999999999997 56555
No 83
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=1.2e-31 Score=316.87 Aligned_cols=374 Identities=17% Similarity=0.207 Sum_probs=263.3
Q ss_pred EEECCCCcccCCCcccchhHHHHHHHHHhCC--CeEEEecCCCCCcCccccCCccee----ecCCcHHHHHHHhhhcCCC
Q 001014 647 LILGGGPNRIGQGIEFDYCCCHTSFSLQSAG--YETIMMNSNPETVSTDYDTSDRLY----FEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 647 lIlG~G~~rig~~~efd~~~~~~~~al~~~G--~~vi~v~~~p~~~s~~~~~ad~~~----~~p~~~e~v~~i~~~~~~d 720 (1190)
||+|+|+ ..+++ +++|++.. .++++.-.||..... ++.+ ....+.+.+.++++++++|
T Consensus 1 lviG~gg--rehal---------~~~l~~s~~~~~~~~~pgn~g~~~~-----~~~~~vp~~~~~d~~~l~~~a~~~~id 64 (434)
T PLN02257 1 LVIGGGG--REHAL---------CYALQRSPSCDAVFCAPGNAGIATS-----GDATCVPDLDISDSAAVISFCRKWGVG 64 (434)
T ss_pred CEEcccH--HHHHH---------HHHHHhCCCCCEEEECCCCHHHhhh-----ccceeecCCCCCCHHHHHHHHHHcCCC
Confidence 6899999 34433 77887765 577777666654322 2222 2346689999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
.|+++.+......+++.|+ +.| ++++||+++++++++||.++|++|+++|||+|+|..+.+.+++.+
T Consensus 65 ~vvvg~E~~lv~~~~d~l~----------~~G---i~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~ 131 (434)
T PLN02257 65 LVVVGPEAPLVAGLADDLV----------KAG---IPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKK 131 (434)
T ss_pred EEEECCchHHHHHHHHHHH----------HCC---CCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHH
Confidence 9998776665458888888 899 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh--C--CCCcEEEEEecCCcceEEEeEEecCCCcEEEEe-
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV--D--PERPVLIDKYLSDAIEIDVDALADSCGNVVIGG- 875 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~--~--~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~- 875 (1190)
++++++||+||||..+++|+||.++++.+|+.+++..+... + ...+++||+|| .|.|++|.+++|++ .++.+.
T Consensus 132 ~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi-~G~E~Sv~~~~dG~-~~~pl~~ 209 (434)
T PLN02257 132 YIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFL-DGEEASFFALVDGE-NAIPLES 209 (434)
T ss_pred HHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECC-CCCEEEEEEEECCC-cEEEEEe
Confidence 99999999999999999999999999999999999876321 1 23579999999 78899999999854 333322
Q ss_pred eeeee--e--cccccccccccccCCCCCCHHHHHHH-HHHHHHHHH---Hc--CCCcceeEEEEEe-cCCCEEEEEEccC
Q 001014 876 IMEHI--E--QAGVHSGDSACMIPTKTISSSCLDTI-SSWTIKLAK---RL--NVCGLMNCQYAIT-TSGDVYLLEANPR 944 (1190)
Q Consensus 876 i~e~~--~--~~g~~~gd~~~~~p~~~l~~~~~~~i-~~~a~~i~~---~L--g~~G~~~ief~~d-~~g~~~viEiNpR 944 (1190)
+.+|. . ..|...|......|++.++++..+++ +++++++++ +. .|+|++++||+++ .+|++||+|+|+|
T Consensus 210 ~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R 289 (434)
T PLN02257 210 AQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVR 289 (434)
T ss_pred eeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECC
Confidence 22221 0 12232333333346667898888875 455555533 43 4669999999997 5788999999999
Q ss_pred CCCC-hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCccc----------cCCeeEEeeccCCCcc----cCCCceee-C
Q 001014 945 ASRT-VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTKEV----------IPKHVSVKEAVLPFEK----FQGCDVLL-G 1007 (1190)
Q Consensus 945 ~~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~~~----------~~~~~~vk~~~~~~~~----~~~~~~~l-g 1007 (1190)
+|.. ...+...++.|+++++++++.|+... ++.+.... .+..+..-.++..+.. .+++...- |
T Consensus 290 ~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~~~~~~~~~~av~vv~a~~gYp~~~~~g~~i~~~~~~~~~~~~~~v~~a~ 369 (434)
T PLN02257 290 FGDPECQVLMMRLESDLAQVLLAACKGELSGVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVAPGVKVFHAG 369 (434)
T ss_pred CCCCchheEehhhcCCHHHHHHHHHcCCCCCCCceECCCceEEEEEcCCCCCCCCCCCCEeeCCccccccCCCCEEEECC
Confidence 9985 33334458999999999999996321 12111110 0110000000000000 01211111 2
Q ss_pred C------cccccc----eeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCCh
Q 001014 1008 P------EMRSTG----EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK 1053 (1190)
Q Consensus 1008 ~------~~rs~G----~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~ 1053 (1190)
+ +..+.| .|++.|+|+++|..+|+.+.... -..| .+++.+++.+
T Consensus 370 ~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i-~~~~-~~~R~DIg~~ 423 (434)
T PLN02257 370 TALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQI-DWPG-GFFRRDIGWR 423 (434)
T ss_pred ceEccCCEEEECCCeEEEEEEecCCHHHHHHHHHHHHhcC-CCCC-CEeechhhHH
Confidence 2 223333 68899999999999999988753 3344 6778777654
No 84
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=6.2e-32 Score=312.63 Aligned_cols=287 Identities=22% Similarity=0.294 Sum_probs=238.5
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhC--CCeEEEecCCCCCcCccccCCcceeecCC-----cHHHHHHHhhh
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA--GYETIMMNSNPETVSTDYDTSDRLYFEPL-----TVEDVLNVIDL 716 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~--G~~vi~v~~~p~~~s~~~~~ad~~~~~p~-----~~e~v~~i~~~ 716 (1190)
.||||+|+|.. . +++++|+++ |++|+++|.+|..+... .+|+.|..|. ..+.+++++++
T Consensus 2 ~~vLv~g~~~~-----------~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~--~~d~~~~~p~~~~~~~~~~l~~~~~~ 67 (326)
T PRK12767 2 MNILVTSAGRR-----------V-QLVKALKKSLLKGRVIGADISELAPALY--FADKFYVVPKVTDPNYIDRLLDICKK 67 (326)
T ss_pred ceEEEecCCcc-----------H-HHHHHHHHhccCCEEEEECCCCcchhhH--hccCcEecCCCCChhHHHHHHHHHHH
Confidence 58999999873 2 568999999 49999999998766543 5777776553 26889999999
Q ss_pred cCCCccccccCCchhh--hhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC
Q 001014 717 ERPEGIIVQFGGQTPL--KLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS 794 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~~~~--~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s 794 (1190)
+++|+|++..+..... .....++ +.| +++++++++++.++.||..|+++|+++|||+|++..+.+
T Consensus 68 ~~id~ii~~~d~~~~~~a~~~~~l~----------~~g---~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~ 134 (326)
T PRK12767 68 EKIDLLIPLIDPELPLLAQNRDRFE----------EIG---VKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPES 134 (326)
T ss_pred hCCCEEEECCcHHHHHHHHHHHHHH----------HcC---cEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccC
Confidence 9999999987765332 3344555 678 899999999999999999999999999999999999999
Q ss_pred HHHHHH--HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEE
Q 001014 795 EADALA--IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVV 872 (1190)
Q Consensus 795 ~~e~~~--~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~ 872 (1190)
.+++.+ +...++||+|+||..+.||+|+.+++|.+|+.++++.. .+++||+|| .|.|++++++++.+|+++
T Consensus 135 ~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~------~~~lvqeyi-~G~e~~v~~~~~~~G~~~ 207 (326)
T PRK12767 135 LEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFI-EGQEYTVDVLCDLNGEVI 207 (326)
T ss_pred HHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC------CCeEEEecc-CCceEEEEEEEcCCCCEE
Confidence 999887 55778999999999999999999999999999988762 389999999 899999999998778888
Q ss_pred EEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhh
Q 001014 873 IGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFV 952 (1190)
Q Consensus 873 ~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~ 952 (1190)
.....+++.. ..|...... ... .+++.+.+.+++++||+.|++++||+++ +|++|+||+|||++++.++
T Consensus 208 ~~~~~~~~~~---~~g~~~~~~---~~~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~-~g~~~viEiNpR~~g~~~~- 276 (326)
T PRK12767 208 SIVPRKRIEV---RAGETSKGV---TVK---DPELFKLAERLAEALGARGPLNIQCFVT-DGEPYLFEINPRFGGGYPL- 276 (326)
T ss_pred EEEEeeeeee---cCCceeEEE---EcC---CHHHHHHHHHHHHhcCCeeeEEEEEEEE-CCeEEEEEEeCCCCCcchh-
Confidence 7777766532 222222111 111 2678899999999999999999999995 5899999999999998776
Q ss_pred hcccCCCHHHHHHHHHcCCCCCC
Q 001014 953 SKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 953 ~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
..++|+|+++++++.++|++++.
T Consensus 277 ~~~~G~n~~~~~~~~~~g~~~~~ 299 (326)
T PRK12767 277 SYMAGANEPDWIIRNLLGGENEP 299 (326)
T ss_pred hHhhCCCHHHHHHHHHcCCCCCc
Confidence 67899999999999999998764
No 85
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=2.2e-31 Score=308.42 Aligned_cols=303 Identities=20% Similarity=0.260 Sum_probs=232.7
Q ss_pred CEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC---CCHHHHH------
Q 001014 93 RKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP---MTPELVE------ 160 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p---~~~~~v~------ 160 (1190)
.||+|+.||. +.||| .||+.++++|++.||+|+.++.+.+.....+...+..|..+ .+.....
T Consensus 2 ~~i~vl~GG~-----S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (347)
T PRK14572 2 AKIAVFFGGS-----STEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKAN 76 (347)
T ss_pred cEEEEEECCC-----CcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeeccccccccccccccccccccccccccc
Confidence 4899999985 89999 57999999999999999988755432111111111111100 0000111
Q ss_pred -----HHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecC
Q 001014 161 -----QVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGN 235 (1190)
Q Consensus 161 -----~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~ 235 (1190)
..+...++|.++++.+|..++++.+ +++|+.+|+|++|++..++.++.||..+|++|+++|||+|++..+.
T Consensus 77 ~~~~~~~~~~~~~d~~f~~~hg~~gEdg~i----q~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~ 152 (347)
T PRK14572 77 GVSEPADISQLDADIAFLGLHGGAGEDGRI----QGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELE 152 (347)
T ss_pred cccccccccccCcCEEEEecCCCCCCCcHH----HHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEE
Confidence 1122346899999999999999999 9999999999999999999999999999999999999999998875
Q ss_pred C------HHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEe
Q 001014 236 T------LDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRD 309 (1190)
Q Consensus 236 s------~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d 309 (1190)
+ .+++.+..++++ ||+||||+.+++|.|+.+|+|.+||..+++.++.. +..+||||||+| +|+++.++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~l~-~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~--~~~vlVEefI~G-~E~sv~vi~~ 228 (347)
T PRK14572 153 KLKYLNSPRKTLLKLESLG-FPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES--DSKVMSQSFLSG-TEVSCGVLER 228 (347)
T ss_pred ccccccChHHHHHHHHhcC-CCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEEcCccc-EEEEEEEEeC
Confidence 3 334444556799 99999999999999999999999999999988754 568999999999 9999999974
Q ss_pred CC-C--cEEEEEeeeeeCC-------CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCC
Q 001014 310 LA-D--NVVIICSIENVDP-------MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDG 379 (1190)
Q Consensus 310 ~~-g--~~~~~~~~e~~~~-------~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g 379 (1190)
.. | ..+.+...+.... .+++.+......|+. ++++..+++++.+.+++++||++ |+++|||+++ +|
T Consensus 229 ~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~-G~~rvD~~~~--~~ 304 (347)
T PRK14572 229 YRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCK-GYSRTDFIIV--DG 304 (347)
T ss_pred ccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCc-ceeEEEEEEE--CC
Confidence 32 2 2333433333221 134445566678987 99999999999999999999996 9999999998 68
Q ss_pred cEEEEEeCCCCCC--c--hHHHHHHhCCCHHHHHHHH
Q 001014 380 EVMVIEMNPRVSR--S--SALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 380 ~~~viEiNpR~~g--s--~~l~~~atG~~l~~~~~~~ 412 (1190)
++||+|||++++- + .+...++.|+++.++.-++
T Consensus 305 ~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 305 EPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred cEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8999999966653 3 2444567788877766554
No 86
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=5.1e-31 Score=301.71 Aligned_cols=284 Identities=24% Similarity=0.381 Sum_probs=233.9
Q ss_pred CCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~ 168 (1190)
.++|.|+-||+ +.|+|. |+.+++++|++.|++|++++.+.. +.+.++.+++
T Consensus 4 ~~~v~~~~g~~-----~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~---------------------~~~~~~~~~~ 57 (304)
T PRK01372 4 FGKVAVLMGGT-----SAEREVSLNSGAAVLAALREAGYDAHPIDPGED---------------------IAAQLKELGF 57 (304)
T ss_pred CcEEEEEeCCC-----CCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc---------------------hHHHhccCCC
Confidence 35899999885 899996 999999999999999999975532 2344556789
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
|+|++.++|+.+++..+ +++++.+|++++|++..++.++.||..++++|+++|||+|++..+.+.+++..+.++++
T Consensus 58 D~v~~~~~g~~~~~~~~----~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~ 133 (304)
T PRK01372 58 DRVFNALHGRGGEDGTI----QGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLG 133 (304)
T ss_pred CEEEEecCCCCCCccHH----HHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcC
Confidence 99999998888777655 67899999999999999999999999999999999999999999999998888889999
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEee-eeeCC-C
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSI-ENVDP-M 326 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~-e~~~~-~ 326 (1190)
||+||||..+++|.|+.++++.+|+.++++..... ...++||+||+| +|+++.++.+....++..... ..++. .
T Consensus 134 -~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~E~~v~vi~~~~~~~~~~~~~~~~~~~~~ 209 (304)
T PRK01372 134 -LPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY--DDEVLVEKYIKG-RELTVAVLGGKALPVIEIVPAGEFYDYEA 209 (304)
T ss_pred -CCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEcccCC-EEEEEEEECCCccceEEEEecCCEEeeec
Confidence 99999999999999999999999999998877544 468999999999 999999986533222222211 11121 2
Q ss_pred CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--h--HHHHHHhC
Q 001014 327 GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S--ALASKATG 402 (1190)
Q Consensus 327 g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~--~l~~~atG 402 (1190)
+++.|......|+. ++++..+++.+.+.++++++|++ |++++||++++ +|++||+|+|||++-. + +......|
T Consensus 210 ~~~~g~~~~~~p~~-~~~~~~~~l~~~a~~~~~~lg~~-g~~~iD~~~~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~g 286 (304)
T PRK01372 210 KYLAGGTQYICPAG-LPAEIEAELQELALKAYRALGCR-GWGRVDFMLDE-DGKPYLLEVNTQPGMTSHSLVPMAARAAG 286 (304)
T ss_pred cccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-ceEEEEEEEcC-CCCEEEEEecCCCCCCcccHHHHHHHHcC
Confidence 45567777778875 99999999999999999999997 99999999997 6899999999887643 2 22345558
Q ss_pred CCHHHHHHHH
Q 001014 403 FPIAKMAAKL 412 (1190)
Q Consensus 403 ~~l~~~~~~~ 412 (1190)
+++.++...+
T Consensus 287 ~~~~~~~~~i 296 (304)
T PRK01372 287 ISFSELVDRI 296 (304)
T ss_pred CCHHHHHHHH
Confidence 8877766554
No 87
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=3.5e-31 Score=304.75 Aligned_cols=293 Identities=24% Similarity=0.369 Sum_probs=228.4
Q ss_pred EEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHH-HHHcCCC
Q 001014 94 KILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQV-LEKERPD 169 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i-~~~~~~d 169 (1190)
||+|+.||+ +.|||+ |+.+++++|+++||+|++++.++......... .+.+... ....++|
T Consensus 1 ~~~~~~gg~-----s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~D 65 (315)
T TIGR01205 1 RVAVLFGGK-----SAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDL----------PQLILELGALLEGID 65 (315)
T ss_pred CEEEEeCCC-----CCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccccch----------HHHHhhccccCCCCC
Confidence 588998885 899994 89999999999999999999887653311000 0111111 1125799
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecC-CHHHH-----HHH
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGN-TLDEC-----ISI 243 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~-s~~e~-----~~~ 243 (1190)
+|++.++|..+++..+ +++++.+|++++|+++.++.++.||..++++|+++|||+|++..+. +.++. ..+
T Consensus 66 ~v~~~~~g~~~~~~~~----~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 141 (315)
T TIGR01205 66 VVFPVLHGRYGEDGTI----QGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQV 141 (315)
T ss_pred EEEEecCCCCCCCcHH----HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHH
Confidence 9999998887777655 7789999999999999999999999999999999999999999887 54322 234
Q ss_pred HHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeee--
Q 001014 244 ANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIE-- 321 (1190)
Q Consensus 244 ~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e-- 321 (1190)
.+.++ ||+||||..+++|.|+.+++|.+|+.++++.+... ...++||+||+| +|+++.++.++++..+.....+
T Consensus 142 ~~~~~-~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~ 217 (315)
T TIGR01205 142 AEPLG-FPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY--DEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIE 217 (315)
T ss_pred HHhcC-CCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCC
Confidence 46789 99999999999999999999999999999887654 458999999999 9999999985432222211111
Q ss_pred -eeCC-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--h--H
Q 001014 322 -NVDP-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S--A 395 (1190)
Q Consensus 322 -~~~~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~--~ 395 (1190)
.++. .+++.+......|+. ++++..+++++.+.+++++||+. |+++|||++++ +|++||+|||||++-+ + +
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~-G~~~vD~~~~~-~g~~~viEvN~~pg~~~~s~~~ 294 (315)
T TIGR01205 218 GFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELALKAYKALGCR-GLARVDFFLDE-EGEIYLNEINTIPGMTAISLFP 294 (315)
T ss_pred CeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCC-ceEEEEEEEeC-CCCEEEEEeeCCCCCCCccHHH
Confidence 1111 134445566667886 99999999999999999999996 99999999997 6789999999887653 2 3
Q ss_pred HHHHHhCCCHHHHHHHH
Q 001014 396 LASKATGFPIAKMAAKL 412 (1190)
Q Consensus 396 l~~~atG~~l~~~~~~~ 412 (1190)
......|+++.++...+
T Consensus 295 ~~~~~~G~~~~~l~~~i 311 (315)
T TIGR01205 295 KAAAAAGIEFSQLVERI 311 (315)
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 34566788887776654
No 88
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=3.4e-31 Score=306.68 Aligned_cols=302 Identities=22% Similarity=0.276 Sum_probs=227.9
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC---------cceEEECCCC-HHH
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGL---------ADRTYITPMT-PEL 158 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~---------ad~~~i~p~~-~~~ 158 (1190)
++||+||-||. +.||| .||..++++|.+.||+|+.++.+.+..+..... .....+.|.. ...
T Consensus 3 ~~~i~vl~GG~-----S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (343)
T PRK14568 3 RIKVGILFGGC-----SEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHG 77 (343)
T ss_pred CcEEEEEECCC-----CCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeecccccccc
Confidence 35899999985 89999 579999999999999999998765421100000 0011121210 000
Q ss_pred HHHH----HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeec
Q 001014 159 VEQV----LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIG 234 (1190)
Q Consensus 159 v~~i----~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v 234 (1190)
+... .+..++|.++|.++|..+++..+ +++|+.+|+|++|++..++.++.||..+|++|+++|||+|++..+
T Consensus 78 ~~~~~~~~~~~~~~d~vf~~lhG~~gedg~i----q~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~ 153 (343)
T PRK14568 78 LLVLEQGEYETIRLDVVFPVLHGKLGEDGAI----QGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTV 153 (343)
T ss_pred ccccCccccccccCCEEEEcCCCCCCCchHH----HHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEE
Confidence 0000 12357999999999999999998 999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcE
Q 001014 235 NTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNV 314 (1190)
Q Consensus 235 ~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~ 314 (1190)
.+.++.. .+.++ ||+||||+.+++|.|+.+|+|.+||.++++.+... +.++|||+||+| +|+++.++.+..+..
T Consensus 154 ~~~~~~~--~~~l~-~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~sv~vl~~~~~~~ 227 (343)
T PRK14568 154 TADERPD--AATLT-YPVFVKPARSGSSFGVSKVNSADELDYAIESARQY--DSKVLIEEAVVG-SEVGCAVLGNGADLV 227 (343)
T ss_pred ECCchhh--hhhcC-CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEECCcCC-EEEEEEEEcCCCCcc
Confidence 7665432 35689 99999999999999999999999999999988766 468999999999 999999997543222
Q ss_pred EEE----Eee-eeeCCC-Cc----ccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEE
Q 001014 315 VII----CSI-ENVDPM-GV----HTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVI 384 (1190)
Q Consensus 315 ~~~----~~~-e~~~~~-g~----~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~vi 384 (1190)
... ... ..++.. .+ ..+......|+. ++++..+++++++.+++++||++ |++++||++++ +|.+||+
T Consensus 228 ~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~-G~~rvDf~l~~-~g~~~ll 304 (343)
T PRK14568 228 VGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCR-GLARVDMFLQE-DGTVVLN 304 (343)
T ss_pred eecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCC-cEEEEEEEEeC-CCCEEEE
Confidence 111 100 112210 11 123344668887 99999999999999999999997 99999999997 7899999
Q ss_pred EeCCCCCCc--h--HHHHHHhCCCHHHHHHH
Q 001014 385 EMNPRVSRS--S--ALASKATGFPIAKMAAK 411 (1190)
Q Consensus 385 EiNpR~~gs--~--~l~~~atG~~l~~~~~~ 411 (1190)
|||++++-+ + +....+.|+++.+..-+
T Consensus 305 EINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 305 EVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 999766643 2 22335567776655444
No 89
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-31 Score=313.05 Aligned_cols=301 Identities=17% Similarity=0.188 Sum_probs=233.5
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc---CccccCCccee-ecCCcHHHHHHHhhhcC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV---STDYDTSDRLY-FEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~---s~~~~~ad~~~-~~p~~~e~v~~i~~~~~ 718 (1190)
+|++||||++.. +..++++++++|+++++++.+++.. ...++.++..+ ....+.+.+++++++++
T Consensus 2 ~k~~liv~~~~~-----------~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 70 (416)
T PRK07206 2 MKKVVIVDPFSS-----------GKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLG 70 (416)
T ss_pred CCeEEEEcCCch-----------HHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcC
Confidence 589999998763 5566999999999999999876542 22333333222 22356889999999999
Q ss_pred CCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHH
Q 001014 719 PEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADA 798 (1190)
Q Consensus 719 ~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~ 798 (1190)
+|+|++..+ ..+.++..+.+ ..| ++ ++++++++..++||..|+++|+++|||+|++..+.+.+++
T Consensus 71 ~d~vi~~~e--~~~~~~a~l~~---------~l~---l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~e~ 135 (416)
T PRK07206 71 PEAIIAGAE--SGVELADRLAE---------ILT---PQ-YSNDPALSSARRNKAEMINALAEAGLPAARQINTADWEEA 135 (416)
T ss_pred CCEEEECCC--ccHHHHHHHHH---------hcC---CC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHHHH
Confidence 999998654 33345555541 345 33 4789999999999999999999999999999999999999
Q ss_pred HHHHHHhCC---cEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh-----CCCCcEEEEEecCCcceEEEeEEecCCCc
Q 001014 799 LAIAKEIGY---PVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV-----DPERPVLIDKYLSDAIEIDVDALADSCGN 870 (1190)
Q Consensus 799 ~~~~~~igy---PvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~-----~~~~~vliEefI~~g~E~~v~v~~d~~G~ 870 (1190)
.++++++|| |+||||..+.||+|+.+|+|.+|++++++++... .....++||+|| .|.|++|+++.. +|+
T Consensus 136 ~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i-~G~E~sv~~~~~-~G~ 213 (416)
T PRK07206 136 EAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYL-IGTEYVVNFVSL-DGN 213 (416)
T ss_pred HHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcc-ccEEEEEEEEEE-CCE
Confidence 999999988 9999999999999999999999999999886532 123579999999 799999999985 577
Q ss_pred EEEEeeeeeeeccccccccccccc-CCCCCCHHHHHHHHHHHHHHHHHcCCC-cceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 871 VVIGGIMEHIEQAGVHSGDSACMI-PTKTISSSCLDTISSWTIKLAKRLNVC-GLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 871 v~~~~i~e~~~~~g~~~gd~~~~~-p~~~l~~~~~~~i~~~a~~i~~~Lg~~-G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
+.+..+...... ....+...... .....+....+++.+.+.+++++||+. |++|+||++ +++++++||||||++|+
T Consensus 214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~-~~~g~~liEin~R~~G~ 291 (416)
T PRK07206 214 HLVTEIVRYHKT-SLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVML-TADGPRLIEIGARLDGG 291 (416)
T ss_pred EEEEEeEEeeec-ccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEE-cCCCCEEEEECCccCCC
Confidence 766655432211 01111111100 001135667899999999999999996 999999999 55668999999999986
Q ss_pred --hhhhhcccCCCHHHHHHHHHcCCCC
Q 001014 949 --VPFVSKAIGHPLAKYAALVMSGKSL 973 (1190)
Q Consensus 949 --~~~~~~~~G~~l~~~~~~~~lG~~l 973 (1190)
..++..++|+|+.+++++.++|.+.
T Consensus 292 ~~~~~~~~~~G~d~~~~~~~~~lg~~~ 318 (416)
T PRK07206 292 LHPDVARLATGDSQLDATVESLADPDV 318 (416)
T ss_pred CccchhhhhcCcCHHHHHHHHHhCchh
Confidence 3457899999999999999999765
No 90
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=5.4e-31 Score=304.58 Aligned_cols=302 Identities=20% Similarity=0.284 Sum_probs=226.8
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHH-HHCCCeEEEEccCCC-CCCCCc-cCcc--e-------EEEC--CC
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKAL-KEEGYEVILINSNPA-TIMTDP-GLAD--R-------TYIT--PM 154 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al-~~~G~~vi~v~~~~~-~~~~~~-~~ad--~-------~~i~--p~ 154 (1190)
+++|+||.||. +.||| .||.+++++| .+.+|+|+.++.+.+ ..+... ...+ . ..+. +.
T Consensus 2 ~~~v~vl~GG~-----S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T PRK14570 2 KKNLMLIFGGV-----SFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLIKRDVLPIVSLIPG 76 (364)
T ss_pred CcEEEEEECCC-----CcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCcccccccccccccccccccccc
Confidence 46899999995 89999 5799999999 678999998876544 211000 0000 0 0000 00
Q ss_pred CHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeec
Q 001014 155 TPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIG 234 (1190)
Q Consensus 155 ~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v 234 (1190)
...+.. .+..++|+|+|.++|..++++.+ +++|+.+|+|++|++..++.++.||..+|++|+++|||+|++..+
T Consensus 77 -~~~~~~-~~~~~~D~vf~~lhG~~GEdg~i----qglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~ 150 (364)
T PRK14570 77 -CGIFVN-NKNLEIDVVFPIVHGRTGEDGAI----QGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGF 150 (364)
T ss_pred -cccccc-CcCcCCCEEEEcCCCCCCCcCHH----HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEE
Confidence 000000 01236999999999999999988 999999999999999999999999999999999999999998766
Q ss_pred CC------HHHHHH-HHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEE
Q 001014 235 NT------LDECIS-IANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVM 307 (1190)
Q Consensus 235 ~s------~~e~~~-~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~ 307 (1190)
.. .+++.+ +...+| ||+||||+.+++|.|+.++++.+||.++++.++.. ++.+|||+||+| +|+++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~lg-~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~--~~~vlVEefI~G-rEi~v~Vl 226 (364)
T PRK14570 151 RKYDYFLDKEGIKKDIKEVLG-YPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY--DLTVVIEKFIEA-REIECSVI 226 (364)
T ss_pred eccccccchHHHHHHHHHhcC-CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEECCcCC-EEEEEEEE
Confidence 42 444443 345799 99999999999999999999999999999998865 468999999999 99999999
Q ss_pred EeCCCcEEEEEeeeee-------CCC-Cc--ccccE-EEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec
Q 001014 308 RDLADNVVIICSIENV-------DPM-GV--HTGDS-ITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP 376 (1190)
Q Consensus 308 ~d~~g~~~~~~~~e~~-------~~~-g~--~~g~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~ 376 (1190)
.+.. ..++...|.. +.. ++ +.+.+ ....|+. ++++..+++++.|.+++++||++ |+++|||++++
T Consensus 227 g~~~--~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~-G~~RvDf~l~~ 302 (364)
T PRK14570 227 GNEQ--IKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELR-GMARIDFLIEK 302 (364)
T ss_pred CCCC--ceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCc-ceEEEEEEEEC
Confidence 7543 2233223321 111 12 23444 4557887 99999999999999999999997 99999999996
Q ss_pred CCCcEEEEEeCCCCCC--ch--HHHHHHhCCCHHHHHHHH
Q 001014 377 VDGEVMVIEMNPRVSR--SS--ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 377 ~~g~~~viEiNpR~~g--s~--~l~~~atG~~l~~~~~~~ 412 (1190)
++|++||+||||+++- .+ +....+.|+++.++.-++
T Consensus 303 ~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 303 DTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred CCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 4588999999966653 33 233455677766655443
No 91
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=6.7e-31 Score=307.51 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=246.3
Q ss_pred CCcHHHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC
Q 001014 704 PLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS 783 (1190)
Q Consensus 704 p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g 783 (1190)
..+.+.++++|+++++|+|++..+......+++.++ +.| ++++||+++++.++.||..+|++|+++|
T Consensus 13 ~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~----------~~G---i~~~g~s~~a~~l~~dK~~~k~~l~~~g 79 (379)
T PRK13790 13 ESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILR----------ANG---FKVFGPNKQAAQIEGSKLFAKKIMEKYN 79 (379)
T ss_pred CCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHH----------hCC---CcEECCCHHHHHHhCCHHHHHHHHHHCC
Confidence 456899999999999999999888777668888888 899 9999999999999999999999999999
Q ss_pred CCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeE
Q 001014 784 IEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDA 863 (1190)
Q Consensus 784 Ip~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v 863 (1190)
||+|++..+.+.+++.++++++|||+||||..+++|+||.+++|.+|+.++++.+.......+++||+|| .|.|++|.+
T Consensus 80 Iptp~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i-~G~E~sv~~ 158 (379)
T PRK13790 80 IPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFL-EGEEFSLMT 158 (379)
T ss_pred CCCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcc-cCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999987643445689999999 789999999
Q ss_pred EecCCCcEEEEee-eeee----ecccccccccccccCCCCCCHHHHHHH-HHHHHHHHHHc---C--CCcceeEEEEEec
Q 001014 864 LADSCGNVVIGGI-MEHI----EQAGVHSGDSACMIPTKTISSSCLDTI-SSWTIKLAKRL---N--VCGLMNCQYAITT 932 (1190)
Q Consensus 864 ~~d~~G~v~~~~i-~e~~----~~~g~~~gd~~~~~p~~~l~~~~~~~i-~~~a~~i~~~L---g--~~G~~~ief~~d~ 932 (1190)
++++++.+.+.++ .+|. ...+.+.|......|.+.++++..+++ ++++.+++++| | +.|++++||+++
T Consensus 159 ~~~g~~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt- 237 (379)
T PRK13790 159 FVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILT- 237 (379)
T ss_pred EeeCCEEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe-
Confidence 9985422222122 2332 134556666555567667888777666 67778888877 4 469999999994
Q ss_pred CCCEEEEEEccCCCCC-hhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEee--ccCCCcc--------cC-
Q 001014 933 SGDVYLLEANPRASRT-VPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKE--AVLPFEK--------FQ- 1000 (1190)
Q Consensus 933 ~g~~~viEiNpR~~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~--~~~~~~~--------~~- 1000 (1190)
++++||||+|+|+|+. ...+...+|+|++++++++++|++++ +..... ....|.. .-+|... ++
T Consensus 238 ~~g~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~-~~~~~~---~~~~v~~~s~gyp~~~~~~~~i~~~~~ 313 (379)
T PRK13790 238 KDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTE-FKWKNE---SIVGVMLASKGYPDAYEKGHKVSGFDL 313 (379)
T ss_pred CCCeEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCc-eeEcCC---CEEEEEEccCCCCCCCCCCCeeeecCC
Confidence 5569999999999883 44456668999999999999998654 221111 0111111 1112110 00
Q ss_pred CCceee-CCc-----ccc----cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCC
Q 001014 1001 GCDVLL-GPE-----MRS----TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLT 1052 (1190)
Q Consensus 1001 ~~~~~l-g~~-----~rs----~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~ 1052 (1190)
+..... |.. ..+ .+.|++.|.|++||..+|..+... +...| .+++.+++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~-i~~~~-~~~R~dig~ 373 (379)
T PRK13790 314 NENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQ-IQSDH-LFYRHDIAN 373 (379)
T ss_pred CCeEEECCccccCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhc-CCCCC-CEeechhhh
Confidence 000111 211 112 236789999999999999998765 33445 666777654
No 92
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.98 E-value=8.3e-30 Score=290.38 Aligned_cols=273 Identities=20% Similarity=0.277 Sum_probs=219.8
Q ss_pred EEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 94 KILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
||+|+-||+ +.||| .|+.+++++|++.|+++.+++.+.+. +..+.+..++|+
T Consensus 2 ~v~v~~gg~-----s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~--------------------~~~~~~~~~~D~ 56 (299)
T PRK14571 2 RVALLMGGV-----SREREISLRSGERVKKALEKLGYEVTVFDVDEDF--------------------LKKVDQLKSFDV 56 (299)
T ss_pred eEEEEeCCC-----CCCccchHHHHHHHHHHHHHcCCeEEEEccCchH--------------------HHHhhhccCCCE
Confidence 799999985 89999 67999999999999999999754321 111122247999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|++..+|..+++..+ +++++.+|++++|+++.++.++.||..++++|+ .|+|+|++..+.+.. ....++ |
T Consensus 57 v~~~~~g~~ge~~~~----~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l~-~ 126 (299)
T PRK14571 57 VFNVLHGTFGEDGTL----QAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPLG-Y 126 (299)
T ss_pred EEEeCCCCCCCccHH----HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEechh----hhhhcC-C
Confidence 999999988888766 789999999999999999999999999999998 589999999886532 234689 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeC------
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVD------ 324 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~------ 324 (1190)
|+||||..+++|.|+.+|+|.+||.++++..+.. ...++|||||+| +|+++.+++++++ ..+++..+...
T Consensus 127 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~vlVEeyI~G-~E~sv~vl~~~~~-~~vl~~~e~~~~~~~~~ 202 (299)
T PRK14571 127 PCVVKPRREGSSIGVFICESDEEFQHALKEDLPR--YGSVIVQEYIPG-REMTVSILETEKG-FEVLPILELRPKRRFYD 202 (299)
T ss_pred CEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh--CCcEEEEccccc-eEEEEEEEcCCCC-eeeeceEEEecCCCccc
Confidence 9999999999999999999999999999877654 357999999999 9999999997543 44444433221
Q ss_pred C-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--h--HHHHH
Q 001014 325 P-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S--ALASK 399 (1190)
Q Consensus 325 ~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~--~l~~~ 399 (1190)
. .++..+......|+. ++++..+++++.+.+++++||+. |+++|||+++ +|++||+||||+++-+ + +...+
T Consensus 203 ~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~-g~~rvD~~~~--~~~~~viEiN~~Pg~~~~s~~~~~~~ 278 (299)
T PRK14571 203 YVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCR-GFGRVDGIFS--DGRFYFLEINTVPGLTELSDLPASAK 278 (299)
T ss_pred cccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCC-ceEEEEEEEE--CCcEEEEEeeCCCCCCccCHHHHHHH
Confidence 1 133345556667886 99999999999999999999996 9999999998 6789999999877653 2 22344
Q ss_pred HhCCCHHHHH
Q 001014 400 ATGFPIAKMA 409 (1190)
Q Consensus 400 atG~~l~~~~ 409 (1190)
..|+++.++.
T Consensus 279 ~~G~~~~~li 288 (299)
T PRK14571 279 AGGIEFEELV 288 (299)
T ss_pred HcCCCHHHHH
Confidence 6677766643
No 93
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.97 E-value=1.1e-29 Score=327.12 Aligned_cols=359 Identities=13% Similarity=0.131 Sum_probs=267.6
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCccee-ecCCcHHHHHHHhhhc-CCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLY-FEPLTVEDVLNVIDLE-RPE 720 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~-~~p~~~e~v~~i~~~~-~~d 720 (1190)
.+++++|+++.... +...+++++++||++++++.+|.........++..+ .+..+.+.+.+.+++. .++
T Consensus 2 ~~~~~~ie~~~~~~---------g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~ 72 (887)
T PRK02186 2 TGIFVFIESNTTGT---------GELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVA 72 (887)
T ss_pred ccEEEEEcCCCCcc---------HHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCC
Confidence 47899999988544 345599999999999999988765332221234433 3456688999988886 578
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++..+. ....+..+.+ ..| +.|++++++.+++||..|+++|+++|||+|++..+.+.+++.+
T Consensus 73 ~V~~~se~--~v~~aa~lae---------~lg-----lpg~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~ 136 (887)
T PRK02186 73 GIMSSSEY--FIEVASEVAR---------RLG-----LPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALD 136 (887)
T ss_pred EEEeCchh--hHHHHHHHHH---------HhC-----cCCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHH
Confidence 88865432 2223333321 556 4578999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+++.++||+||||..+.||+||.+|+|.+|+.++++.+... ...+++||||| .|.||+|+++.+. |.+.+.++.+..
T Consensus 137 ~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-~~~~~lvEEfI-~G~E~sVe~i~~~-g~~~i~~i~~k~ 213 (887)
T PRK02186 137 ALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYV-EGDEYSVETLTVA-RGHQVLGITRKH 213 (887)
T ss_pred HHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-CCCcEEEeecc-cCCcEEEEEEEEC-CcEEEEEEEeee
Confidence 99999999999999999999999999999999999876542 35689999999 7899999999874 567777776543
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCC-cceeEEEEEecCCCEEEEEEccCCCCCh--hhhhcccC
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVC-GLMNCQYAITTSGDVYLLEANPRASRTV--PFVSKAIG 957 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~-G~~~ief~~d~~g~~~viEiNpR~~~s~--~~~~~~~G 957 (1190)
...+.+..+....+|. .++++..+++.+.+.+++++||+. |++|+||++ +++++||||||||++|+. .++..++|
T Consensus 214 ~~~~~~~ve~g~~~P~-~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~-t~~g~~liEIn~R~~G~~i~~li~~a~G 291 (887)
T PRK02186 214 LGPPPHFVEIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRV-RGDTVVIIEINPRLAGGMIPVLLEEAFG 291 (887)
T ss_pred cCCCCCeEEeccccCC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEE-ECCCEEEEEECCCCCCccHHHHHHHHHC
Confidence 2222233233334555 588889999999999999999996 999999999 567899999999999973 36788999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC---------CC-----cccCCCceee----CCc-------ccc
Q 001014 958 HPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL---------PF-----EKFQGCDVLL----GPE-------MRS 1012 (1190)
Q Consensus 958 ~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~---------~~-----~~~~~~~~~l----g~~-------~rs 1012 (1190)
+|++++++++++|.++..... ...+..+..... ++ ...++....+ |.. ...
T Consensus 292 vd~~~~~i~~~lG~~~~~~~~----~~~~~ai~~~~~~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 367 (887)
T PRK02186 292 VDLLDHVIDLHLGVAAFADPT----AKRYGAIRFVLPARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDR 367 (887)
T ss_pred cCHHHHHHHHhCCCCCCCCCC----CCCeEEEEEEecCCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCc
Confidence 999999999999988753211 111222211110 00 0111111110 221 235
Q ss_pred cceeeeeeCCHHHHHHHHHHHcC
Q 001014 1013 TGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1013 ~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
.|.|+..|+|.+++..++..+..
T Consensus 368 ~g~vi~~g~~~~e~~~~~~~~~~ 390 (887)
T PRK02186 368 IAAVVCAGDHRDSVAAAAERAVA 390 (887)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHh
Confidence 78999999999999999988765
No 94
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=2e-29 Score=285.80 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=218.9
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
++||.||-||. +-|.+.| +.+++++|++.||+++.++.+... +..-+...++
T Consensus 3 ~~~i~vl~gg~-----s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~--------------------~~~~l~~~~~ 57 (296)
T PRK14569 3 NEKIVVLYGGD-----SPEREVSLKSGKAVLDSLISQGYDAVGVDASGKE--------------------LVAKLLELKP 57 (296)
T ss_pred CcEEEEEeCCC-----CCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchh--------------------HHHHhhccCC
Confidence 56888887765 4566654 778899999999999988753210 1112233579
Q ss_pred CccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHH
Q 001014 720 EGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEAD 797 (1190)
Q Consensus 720 d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e 797 (1190)
|.|++.+.|.. ...++..|+ ..| +++.|++++++.++.||..+|++|+++|||+|++..+.+..
T Consensus 58 d~vf~~lhG~~ge~~~i~~~le----------~~g---ip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~- 123 (296)
T PRK14569 58 DKCFVALHGEDGENGRVSALLE----------MLE---IKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL- 123 (296)
T ss_pred CEEEEeCCCCCCCChHHHHHHH----------HcC---CCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh-
Confidence 98888776552 335777777 899 99999999999999999999999999999999998776422
Q ss_pred HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCC-cEEEEee
Q 001014 798 ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCG-NVVIGGI 876 (1190)
Q Consensus 798 ~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G-~v~~~~i 876 (1190)
...+.++||+||||..+++|.|+.+|+|.+||..+++.+... .+++||+|| .|+|++|.++.++.. .+.+.+.
T Consensus 124 --~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~---~~~lvEefI-~G~E~tv~vl~~~~~~~~~i~~~ 197 (296)
T PRK14569 124 --VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWV-TGKEITVAIVNDEVYSSVWIEPQ 197 (296)
T ss_pred --hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhc---CCEEEEccc-ccEEEEEEEECCcCcceEEEecC
Confidence 235678999999999999999999999999999999886432 479999999 799999999865321 1222222
Q ss_pred eeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC----hhhh
Q 001014 877 MEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT----VPFV 952 (1190)
Q Consensus 877 ~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s----~~~~ 952 (1190)
.+.......+.+.+....|+ .++++..+++++++.+++++||++|+++|||+++.+|++||+|||||++-+ .|..
T Consensus 198 ~~~~~~~~k~~~~~~~~~P~-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~ 276 (296)
T PRK14569 198 NEFYDYESKYSGKSIYHSPS-GLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKS 276 (296)
T ss_pred CCcCChhhccCCCcEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHH
Confidence 22222223345555555565 588888899999999999999999999999999778999999999999854 6677
Q ss_pred hcccCCCHHHHHHHHH
Q 001014 953 SKAIGHPLAKYAALVM 968 (1190)
Q Consensus 953 ~~~~G~~l~~~~~~~~ 968 (1190)
....|+++.++..+++
T Consensus 277 ~~~~G~~~~~li~~ii 292 (296)
T PRK14569 277 AAAEGVDFDSFVKRII 292 (296)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 8889999999987765
No 95
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.97 E-value=1.7e-29 Score=282.69 Aligned_cols=278 Identities=23% Similarity=0.338 Sum_probs=229.6
Q ss_pred HHHHHHHHHh-CCCeEEEecCCCCCcCccccCCcceeecCCc----HHHHHHHhhhcCCCccccccCCchhhhhhhhHHh
Q 001014 666 CCHTSFSLQS-AGYETIMMNSNPETVSTDYDTSDRLYFEPLT----VEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQ 740 (1190)
Q Consensus 666 ~~~~~~al~~-~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~----~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~ 740 (1190)
.+++++++++ ..++++..+.+|..+... .+|..|.+|.+ ++.++++|+++++|.++|....+. ++..-+
T Consensus 11 ~~~~i~~lr~~~~~~i~~sh~~~~~~~~~--~aD~~~~eP~~~~~yv~~~l~~C~~~~Idv~~P~~~~~~---l~~~r~- 84 (329)
T PF15632_consen 11 QRDIIRSLRANRDFTIIASHRDPRAPILY--AADEAYLEPADGEEYVDWCLDFCKEHGIDVFVPGRNREL---LAAHRD- 84 (329)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCchHHh--cCceeeecCCCHHHHHHHHHHHHHHhCCeEEEcCccHHH---HHHHHH-
Confidence 6777888888 567888888888877655 79999999975 778999999999999999877554 333322
Q ss_pred hhccCCCcccCCCCceEEcc-CCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCc---EEEecCcC
Q 001014 741 YLDEHRLPSASGDGLVRIWG-TSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYP---VVVRPSYV 816 (1190)
Q Consensus 741 ~l~~~~~l~~~G~~~i~~~g-~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyP---vvvKP~~~ 816 (1190)
.|++.| ++++- ++.++++++.||..|.+.+++.|||+|++..+++.+++..+.+++++| ++|||..|
T Consensus 85 ------~F~a~G---v~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g 155 (329)
T PF15632_consen 85 ------EFEALG---VKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVG 155 (329)
T ss_pred ------HHHHhC---CEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccC
Confidence 233789 88877 889999999999999999999999999999999999999999998888 99999999
Q ss_pred CCCcceEEeC-CHHHHHHHHH-------------HhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeec
Q 001014 817 LGGRAMEIVY-TDETLVTYLE-------------NAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQ 882 (1190)
Q Consensus 817 ~gg~Gv~iv~-~~~el~~~~~-------------~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~ 882 (1190)
.||+|.+++. +.++++.... .........++||++|+ .|.|||||++++. |+++..-...+.
T Consensus 156 ~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL-~G~EySVD~l~~~-G~viaaV~R~K~-- 231 (329)
T PF15632_consen 156 IGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL-PGPEYSVDCLADE-GRVIAAVPRRKL-- 231 (329)
T ss_pred CCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC-CCCeEEEEEEecC-CEEEEEEEEEec--
Confidence 9999999999 5555554433 11222345689999999 9999999999994 888765555444
Q ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHH
Q 001014 883 AGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAK 962 (1190)
Q Consensus 883 ~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~ 962 (1190)
| ....+ +..+++.+.++++++.+|+.|++||||+.|.+|.++++|||||++|+.++ +..+|+|+++
T Consensus 232 -G-----~~q~l-------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~-s~~aGvNlp~ 297 (329)
T PF15632_consen 232 -G-----RRQVL-------ENDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGY-SCAAGVNLPY 297 (329)
T ss_pred -C-----ceeEE-------EECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhh-HhhcCCChHH
Confidence 2 11111 12367899999999999999999999999999999999999999999998 5579999999
Q ss_pred HHHHHHcCCCCCCC
Q 001014 963 YAALVMSGKSLNDL 976 (1190)
Q Consensus 963 ~~~~~~lG~~l~~~ 976 (1190)
+++...+|++.++.
T Consensus 298 la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 298 LAVKLALGEPIPPP 311 (329)
T ss_pred HHHHHHcCCCCCCc
Confidence 99999999988754
No 96
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=304.97 Aligned_cols=379 Identities=21% Similarity=0.357 Sum_probs=302.0
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC---------eEEEEccCC--CCCCCCccCcceEEECCC----
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY---------EVILINSNP--ATIMTDPGLADRTYITPM---- 154 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~---------~vi~v~~~~--~~~~~~~~~ad~~~i~p~---- 154 (1190)
..++||||...|- ++...+++.|+--| +.++..+.. ...+-..++||++.-.|-
T Consensus 52 rvI~kILIAnNGi-----------AAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNn 120 (2196)
T KOG0368|consen 52 RVIKRILIANNGI-----------AAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNN 120 (2196)
T ss_pred ceeEEEEEecccH-----------HHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCC
Confidence 3568999999993 24455566655332 233332211 223334678988655553
Q ss_pred ----CHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 155 ----TPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 155 ----~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
+.|.+.+++++.++|+|+++.| ...+|-.+ .+.|...||-|+||+..++....||....-.++.+|+|+.+
T Consensus 121 NNyANVdlIvdiAe~~~VdAVWaGWG-HASENP~L----Pe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlp 195 (2196)
T KOG0368|consen 121 NNYANVDLIVDIAERTDVDAVWAGWG-HASENPEL----PERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLP 195 (2196)
T ss_pred CCcccHHHHHHHHHhcccceEeeccc-ccccCcch----HHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCccc
Confidence 5789999999999999999987 23333322 35788889999999999999999999999999999999976
Q ss_pred e--------------------------eecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc
Q 001014 231 S--------------------------GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA 284 (1190)
Q Consensus 231 ~--------------------------~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~ 284 (1190)
+ ..+.+.+|..+.++.+| ||++||.+.|+||+|++.|++.+|+...+++....
T Consensus 196 WSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IG-fPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E 274 (2196)
T KOG0368|consen 196 WSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIG-FPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE 274 (2196)
T ss_pred ccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcC-CceEEEeccCCCCcceeeccchHHHHHHHHHHHhh
Confidence 4 13456778888999999 99999999999999999999999999999999999
Q ss_pred CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 001014 285 SLTSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIRE 360 (1190)
Q Consensus 285 ~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~ 360 (1190)
.|+.++++.+...+.++++|+.+.|+.|+++.+ |++|+.+ ++.+..+|+-.-+.+..+.|.+.|.++++.
T Consensus 275 vPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRh------QKIIEEAPatIap~etf~~Me~~AvrLak~ 348 (2196)
T KOG0368|consen 275 VPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRH------QKIIEEAPATIAPPETFKKMEQAAVRLAKL 348 (2196)
T ss_pred CCCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHH------HHHHhhCCcccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987 8888876 788888999877899999999999999999
Q ss_pred hCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCCc-----------------
Q 001014 361 IGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPN----------------- 423 (1190)
Q Consensus 361 lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~----------------- 423 (1190)
.||. +...||+.+.|++|++||+|.|||++-.++.+++.+|+|++..++++|+|.||..|+.
T Consensus 349 VGYv-SAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idf 427 (2196)
T KOG0368|consen 349 VGYV-SAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDF 427 (2196)
T ss_pred hcce-ecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCCh
Confidence 9995 9999999999999999999999999999999999999999999999999999876631
Q ss_pred ---------------cccCCCC-ccccCCcCeEE-eeec----eeeecccCCCCcccCCCCCc-EEEEEEEeCCHHHHHH
Q 001014 424 ---------------DITKKTP-ASFEPSIDYVV-TKIP----RFAFEKFPGSEPLLTTQMKS-VGEAMALGRTFQESFQ 481 (1190)
Q Consensus 424 ---------------~i~~~~~-~~f~p~~~~v~-~k~p----~~~~~~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ 481 (1190)
+||.++| ..|.|+.+.+- .+++ .|..-... ....+..-.+| .|||-++|+|++||..
T Consensus 428 e~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~-~~g~iHeFadSQFGHiFa~Ge~R~eAi~ 506 (2196)
T KOG0368|consen 428 ENAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVG-NGGGIHEFADSQFGHIFAFGESRQEAIA 506 (2196)
T ss_pred hhccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEec-CCCceeeccccccceeeeecCcHHHHHH
Confidence 1223444 34777777554 2222 33321111 11112222223 5999999999999999
Q ss_pred HHHHhhh-cCccC
Q 001014 482 KALRSLE-CGFSG 493 (1190)
Q Consensus 482 ka~~~l~-~~~~g 493 (1190)
.+..+|. +.++|
T Consensus 507 nMv~aLKelsIRg 519 (2196)
T KOG0368|consen 507 NMVVALKELSIRG 519 (2196)
T ss_pred HHHHHHHheeecc
Confidence 9999995 77776
No 97
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.97 E-value=1.2e-28 Score=315.95 Aligned_cols=303 Identities=22% Similarity=0.269 Sum_probs=230.6
Q ss_pred CCCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcce----EEECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDP-GLADR----TYITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~----~~i~p~~~~~v~~i 162 (1190)
+++||+|+-||. +.|||. ||.+++++|.+.||+|+.++.+.+...... ...+. ....++.. .+..
T Consensus 450 ~~~~i~vl~GG~-----S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 522 (809)
T PRK14573 450 KKLSLGLVCGGK-----SCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSS-EIAQ- 522 (809)
T ss_pred CCcEEEEEECCC-----CCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccch-hhhh-
Confidence 456999999995 899995 599999999999999999987664311100 00000 00001111 1100
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCC------
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNT------ 236 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s------ 236 (1190)
...++|.|+|.++|..+++..+ +++|+.+|+|++|++..+..++.||..+|++|+++|||+|++..++.
T Consensus 523 -~~~~~d~vf~~lhG~~gedg~i----q~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~ 597 (809)
T PRK14573 523 -ALAKVDVVLPILHGPFGEDGTM----QGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKRE 597 (809)
T ss_pred -ccccCCEEEEcCCCCCCCChHH----HHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcccC
Confidence 1146999999999999999988 99999999999999999999999999999999999999999988763
Q ss_pred HH-HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 237 LD-ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 237 ~~-e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
.+ .+.++.+.++ ||+||||+.+++|.|+.+|++.+||.+++..++.. ++++|||||+.|.+|++|.++++..+...
T Consensus 598 ~~~~~~~~~~~lg-~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~i~~grEi~v~vl~~~~~~~~ 674 (809)
T PRK14573 598 PELCLAHIVEAFS-FPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY--DTDVFVEESRLGSREIEVSCLGDGSSAYV 674 (809)
T ss_pred hHHHHHHHHHhcC-CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeccCCCEEEEEEEEeCCCCceE
Confidence 22 2345667899 99999999999999999999999999999998765 56899999987769999999997665443
Q ss_pred EEEeeee------eCCC-Ccc-ccc--EEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEE
Q 001014 316 IICSIEN------VDPM-GVH-TGD--SITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIE 385 (1190)
Q Consensus 316 ~~~~~e~------~~~~-g~~-~g~--~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viE 385 (1190)
.....+. +++. ++. .|. .....|+. ++++..++++++|.+++++||++ |+++|||++++ +|++||+|
T Consensus 675 ~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G~~riDf~v~~-~g~~yv~E 751 (809)
T PRK14573 675 IAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGK-GSCRIDFFLDE-EGNFWLSE 751 (809)
T ss_pred eccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCc-eEEEEEEEEcC-CCCEEEEE
Confidence 3333332 2221 221 222 22335776 99999999999999999999996 99999999996 78999999
Q ss_pred eCCCCCCc--h--HHHHHHhCCCHHHHHHH
Q 001014 386 MNPRVSRS--S--ALASKATGFPIAKMAAK 411 (1190)
Q Consensus 386 iNpR~~gs--~--~l~~~atG~~l~~~~~~ 411 (1190)
||||++=+ + +....+.|+++.+..-+
T Consensus 752 iNt~PG~t~~s~~p~~~~~~G~~~~~li~~ 781 (809)
T PRK14573 752 MNPIPGMTEASPFLTAFVRKGWTYEQIVHQ 781 (809)
T ss_pred eeCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 99888753 2 22334556665555444
No 98
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.97 E-value=4.4e-28 Score=271.27 Aligned_cols=278 Identities=23% Similarity=0.413 Sum_probs=229.5
Q ss_pred HHHHHHHHHH-CCCeEEEEccCCCCCCCCccCcceEEECCCCH----HHHHHHHHHcCCCEEEecCCChhHHHHHHHHHH
Q 001014 115 GTQACKALKE-EGYEVILINSNPATIMTDPGLADRTYITPMTP----ELVEQVLEKERPDALLPTMGGQTALNLAVALAE 189 (1190)
Q Consensus 115 g~~~~~al~~-~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~----~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~ 189 (1190)
.+.+++++++ ..++++..+.++.... ...||..|.+|.+. +.++++|+++++|+++|...... ...+
T Consensus 11 ~~~~i~~lr~~~~~~i~~sh~~~~~~~--~~~aD~~~~eP~~~~~yv~~~l~~C~~~~Idv~~P~~~~~~------l~~~ 82 (329)
T PF15632_consen 11 QRDIIRSLRANRDFTIIASHRDPRAPI--LYAADEAYLEPADGEEYVDWCLDFCKEHGIDVFVPGRNREL------LAAH 82 (329)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCchH--HhcCceeeecCCCHHHHHHHHHHHHHHhCCeEEEcCccHHH------HHHH
Confidence 6788999998 4677888888887766 67899999999853 36889999999999999887322 3334
Q ss_pred hhHHHHcCCcEeC-CcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc---EEEecCCCCCCcce
Q 001014 190 SGALEKYGVELIG-AKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP---LIIRPAFTLGGTGG 265 (1190)
Q Consensus 190 ~~~le~~gi~~~G-~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P---vVVKP~~g~gg~Gv 265 (1190)
++.+++.|++++- ++.++++++.||..+.+.|++.|+|+|+++.+++.++++.+.++++ +| ++|||+.|.||.|.
T Consensus 83 r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~-~~~~~~CvKP~~g~gg~GF 161 (329)
T PF15632_consen 83 RDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELR-FPGQPLCVKPAVGIGGRGF 161 (329)
T ss_pred HHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcC-CCCceEEEecccCCCcceE
Confidence 5789999999987 7899999999999999999999999999999999999999999887 77 99999999999999
Q ss_pred EEeC-CHHHHHHHHH------------HHHh-cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccc
Q 001014 266 GIAY-NKEEFEAICK------------AGLA-ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTG 331 (1190)
Q Consensus 266 ~iv~-~~~el~~~~~------------~~~~-~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g 331 (1190)
++++ +.+++..... .++. .....++||++|++| .||||+++.+. |+++......+. | . .
T Consensus 162 r~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~---G-~-~ 234 (329)
T PF15632_consen 162 RVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL---G-R-R 234 (329)
T ss_pred EEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec---C-c-e
Confidence 9998 5555544433 1222 223568999999999 99999999975 777766655554 2 1 1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 001014 332 DSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAK 411 (1190)
Q Consensus 332 ~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~ 411 (1190)
..+. ...++.+.|.++++.+|+. |.+||||+.|. +|.++++|||||++|+-.++. .+|+|+.+++++
T Consensus 235 q~l~----------~~~~l~e~a~~l~~~~~l~-g~~NiQ~r~d~-~g~p~LLEINpR~sGGi~~s~-~aGvNlp~la~~ 301 (329)
T PF15632_consen 235 QVLE----------NDEELIELARRLAEAFGLD-GLFNIQFRYDE-DGNPKLLEINPRPSGGIGYSC-AAGVNLPYLAVK 301 (329)
T ss_pred eEEE----------ECHHHHHHHHHHHHHhCCC-ceEEEEEEEcC-CCCEEEEEeCCCCccchhhHh-hcCCChHHHHHH
Confidence 1111 1356899999999999996 99999999986 899999999999999987755 689999999999
Q ss_pred HHcCCCCCCC
Q 001014 412 LSVGYSLDQI 421 (1190)
Q Consensus 412 ~alG~~l~~~ 421 (1190)
.++|.+.+..
T Consensus 302 ~~lG~~~~~~ 311 (329)
T PF15632_consen 302 LALGEPIPPP 311 (329)
T ss_pred HHcCCCCCCc
Confidence 9999988755
No 99
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.97 E-value=1.2e-28 Score=283.56 Aligned_cols=292 Identities=21% Similarity=0.303 Sum_probs=220.8
Q ss_pred EEEEECCCCcccCCCcccch---hHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHH-hhhcCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDY---CCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNV-IDLERPE 720 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~---~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i-~~~~~~d 720 (1190)
||.||=||+ +.|+|. ++.+++++|++.||++++++.++...... .| ..+.+... ....++|
T Consensus 1 ~~~~~~gg~-----s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~D 65 (315)
T TIGR01205 1 RVAVLFGGK-----SAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTY---KD-------LPQLILELGALLEGID 65 (315)
T ss_pred CEEEEeCCC-----CCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccc---cc-------hHHHHhhccccCCCCC
Confidence 466666555 568887 67788999999999999999887553211 11 01111111 1225789
Q ss_pred ccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeec-CHHH
Q 001014 721 GIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAK-SEAD 797 (1190)
Q Consensus 721 ~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~-s~~e 797 (1190)
.|++...+. ....++..++ ..| ++++|+++.++.++.||..++++|+++|||+|++..+. +.++
T Consensus 66 ~v~~~~~g~~~~~~~~~~~le----------~~g---ip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~ 132 (315)
T TIGR01205 66 VVFPVLHGRYGEDGTIQGLLE----------LMG---IPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRAS 132 (315)
T ss_pred EEEEecCCCCCCCcHHHHHHH----------HcC---CCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEeccccc
Confidence 999876654 2235566666 889 99999999999999999999999999999999999887 5433
Q ss_pred H-----HHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEE
Q 001014 798 A-----LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVV 872 (1190)
Q Consensus 798 ~-----~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~ 872 (1190)
. ..+.+.++||+||||..+++|+|+.+++|.+++.++++.+... ..+++||+|| .|+|++|.++.++++...
T Consensus 133 ~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i-~G~e~~v~vi~~~~~~~~ 209 (315)
T TIGR01205 133 ADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY--DEEVLVEQFI-KGRELEVSILGNEEALPI 209 (315)
T ss_pred chhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCC-CCEEEEEEEECCCCccce
Confidence 2 2344679999999999999999999999999999998876543 4689999999 799999999986432222
Q ss_pred EEeeeee--ee--cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 873 IGGIMEH--IE--QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 873 ~~~i~e~--~~--~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
.....+. +. ....+.+......|+ .++++..+++++.+.+++++||++|+++|||+++++|++||+|||||++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~ 288 (315)
T TIGR01205 210 IEIVPEIEGFYDYEAKYLDGSTEYVIPA-PLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMT 288 (315)
T ss_pred EEecCCCCCeeCcccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCC
Confidence 2211111 10 112233433334455 689999999999999999999999999999999777899999999998764
Q ss_pred ----hhhhhcccCCCHHHHHHHHH
Q 001014 949 ----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 949 ----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
.+...+..|+++.++...++
T Consensus 289 ~~s~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 289 AISLFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred CccHHHHHHHHcCCCHHHHHHHHH
Confidence 45567889999999988765
No 100
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.96 E-value=4.8e-28 Score=277.18 Aligned_cols=284 Identities=20% Similarity=0.281 Sum_probs=224.1
Q ss_pred CCcEEEEECCCCcccCCCcccch---hHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDY---CCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~---~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~ 718 (1190)
.+++|.|+=||+ +-|++. ++.++.++|++.|+++++++.+.. +.+.++.++
T Consensus 3 ~~~~v~~~~g~~-----~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~---------------------~~~~~~~~~ 56 (304)
T PRK01372 3 MFGKVAVLMGGT-----SAEREVSLNSGAAVLAALREAGYDAHPIDPGED---------------------IAAQLKELG 56 (304)
T ss_pred CCcEEEEEeCCC-----CCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc---------------------hHHHhccCC
Confidence 345788887665 457777 889999999999999999976532 233445568
Q ss_pred CCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHH
Q 001014 719 PEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEA 796 (1190)
Q Consensus 719 ~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~ 796 (1190)
+|.|++.+++.. ...+...++ ..| ++++|+++.++.++.||..++++|+++|||+|++..+.+.+
T Consensus 57 ~D~v~~~~~g~~~~~~~~~~~le----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~ 123 (304)
T PRK01372 57 FDRVFNALHGRGGEDGTIQGLLE----------LLG---IPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREE 123 (304)
T ss_pred CCEEEEecCCCCCCccHHHHHHH----------HcC---CCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc
Confidence 999998876642 223555666 789 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEee
Q 001014 797 DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI 876 (1190)
Q Consensus 797 e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i 876 (1190)
++..++++++||+||||..+++|+|+.++++.+++.++++.+... ..+++||+|| .|+|++|.++.+....++....
T Consensus 124 ~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i-~G~E~~v~vi~~~~~~~~~~~~ 200 (304)
T PRK01372 124 DLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY--DDEVLVEKYI-KGRELTVAVLGGKALPVIEIVP 200 (304)
T ss_pred hHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEccc-CCEEEEEEEECCCccceEEEEe
Confidence 988889999999999999999999999999999999988876432 4689999999 6999999998763211111000
Q ss_pred -eeee-ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC----hh
Q 001014 877 -MEHI-EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT----VP 950 (1190)
Q Consensus 877 -~e~~-~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s----~~ 950 (1190)
.... .....+.|......|+ .++++..+++++++.+++++||++|++++||+++.+|++||+|+|||++.+ .+
T Consensus 201 ~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~ 279 (304)
T PRK01372 201 AGEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVP 279 (304)
T ss_pred cCCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHH
Confidence 0000 1122344554445555 688999999999999999999999999999999877999999999998764 44
Q ss_pred hhhcccCCCHHHHHHHHH
Q 001014 951 FVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 951 ~~~~~~G~~l~~~~~~~~ 968 (1190)
......|+|+.++...++
T Consensus 280 ~~~~~~g~~~~~~~~~ii 297 (304)
T PRK01372 280 MAARAAGISFSELVDRIL 297 (304)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 455667999998877664
No 101
>PRK06849 hypothetical protein; Provisional
Probab=99.96 E-value=7.9e-29 Score=292.95 Aligned_cols=274 Identities=18% Similarity=0.256 Sum_probs=214.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC--C-----cHHHHHHHh
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP--L-----TVEDVLNVI 714 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p--~-----~~e~v~~i~ 714 (1190)
++++|||+|++.. .++++++++++.|++|+++++++...+.....+|+.|..| . ..+.+++++
T Consensus 3 ~~~~VLI~G~~~~----------~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~ 72 (389)
T PRK06849 3 TKKTVLITGARAP----------AALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIV 72 (389)
T ss_pred CCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHH
Confidence 5689999998874 3788899999999999999999877665555678777653 2 268899999
Q ss_pred hhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC
Q 001014 715 DLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS 794 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s 794 (1190)
+++++|.||++.+.. ..++...+ ..+.+ +.++++++++++.+.||..|+++++++|||+|++..+++
T Consensus 73 ~~~~id~vIP~~e~~--~~~a~~~~--------~l~~~---~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~ 139 (389)
T PRK06849 73 QRENIDLLIPTCEEV--FYLSHAKE--------ELSAY---CEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITD 139 (389)
T ss_pred HHcCCCEEEECChHH--HhHHhhhh--------hhcCC---cEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCC
Confidence 999999999988744 22332222 11345 778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEE
Q 001014 795 EADALAIAKEI-GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVI 873 (1190)
Q Consensus 795 ~~e~~~~~~~i-gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~ 873 (1190)
.+++.++..+. +||+|+||.++.+|.|+.++.+.+++... ......++++|||| .|.|+++.++.. +|++..
T Consensus 140 ~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~-----~~~~~~~~ivQe~I-~G~e~~~~~~~~-~G~v~~ 212 (389)
T PRK06849 140 PEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKEL-----PISKDNPWVMQEFI-QGKEYCSYSIVR-SGELRA 212 (389)
T ss_pred HHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhccc-----ccCCCCCeEEEEEe-cCCeEEEEEEEE-CCEEEE
Confidence 99998887776 99999999999999999999995544321 11234579999999 788999988875 578776
Q ss_pred EeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhh
Q 001014 874 GGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVS 953 (1190)
Q Consensus 874 ~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~ 953 (1190)
..+....... ..|-+....+ .. .+++.+.+++++++||++|.+++||+.+++|++|+||||||++++.+++.
T Consensus 213 ~~~~~~~~~~--~~~~~~~~~~---~~---~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 213 HSCYKPEYCA--GSGAQIAFQP---IN---HPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred EEEeeccccC--CCCceeEeEE---CC---cHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 6553321111 1111111111 12 36789999999999999999999999976899999999999999988844
No 102
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.96 E-value=3.7e-28 Score=280.19 Aligned_cols=300 Identities=19% Similarity=0.214 Sum_probs=223.0
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCC-cCccccCCccee---ecCCcHHHHHHHhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPET-VSTDYDTSDRLY---FEPLTVEDVLNVID 715 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~-~s~~~~~ad~~~---~~p~~~e~v~~i~~ 715 (1190)
++||.||=||. +.|.|-| +..++++|++.||+++.++.+.+. +.......+.+- ..+.+.+ +....+
T Consensus 3 ~~~i~vl~GG~-----S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (333)
T PRK01966 3 KMRVALLFGGR-----SAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDDNDKEDLS-LLILPS 76 (333)
T ss_pred CcEEEEEeCCC-----CCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhcccccccccccc-hhcccc
Confidence 57898888776 4566655 788899999999999998866531 100000000000 0000111 001111
Q ss_pred hc--CCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee
Q 001014 716 LE--RPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI 791 (1190)
Q Consensus 716 ~~--~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~ 791 (1190)
.. ++|.|++...|. ..-.+...|+ ..| +++.|++..++.++.||..++++|+++|||+|++..
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~iq~lle----------~~g---ipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~ 143 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTIQGLLE----------LLG---IPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVV 143 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHHHHHHH----------HcC---CCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE
Confidence 22 689999886654 2234666666 889 999999999999999999999999999999999988
Q ss_pred ecCHHH----HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEAD----ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e----~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.++ ...+.+.++||+||||..+++|.|+.+|++.+||.++++.++.. +..++||+|| .|+|++|.++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEefI-~G~E~~v~vl~~- 219 (333)
T PRK01966 144 LTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY--DRKVLVEQGI-KGREIECAVLGN- 219 (333)
T ss_pred EeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCc-CCEEEEEEEECC-
Confidence 876554 24556789999999999999999999999999999999987654 4689999999 689999999987
Q ss_pred CCcEEEEeeeeeeecc-------cccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEE
Q 001014 868 CGNVVIGGIMEHIEQA-------GVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLE 940 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~~-------g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viE 940 (1190)
++.+ .++.+..... ....|.+....|+ .++++..+++++++.+++++||++|++++||+++.+|++||+|
T Consensus 220 ~~~~--~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlE 296 (333)
T PRK01966 220 DPKA--SVPGEIVKPDDFYDYEAKYLDGSAELIIPA-DLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNE 296 (333)
T ss_pred CCeE--cccEEEecCCceEcHHHccCCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEE
Confidence 3442 2333332211 1112222333455 6999999999999999999999999999999997788999999
Q ss_pred EccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 941 ANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 941 iNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
||||++-+ +|...++.|+|+.++.-+++
T Consensus 297 iNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~ii 328 (333)
T PRK01966 297 INTMPGFTPISMYPKLWEASGLSYPELIDRLI 328 (333)
T ss_pred eeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99999964 56677889999999987664
No 103
>PRK06849 hypothetical protein; Provisional
Probab=99.96 E-value=8.3e-28 Score=284.26 Aligned_cols=271 Identities=16% Similarity=0.254 Sum_probs=211.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC--C-C----HHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP--M-T----PELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p--~-~----~~~v~~i~~ 164 (1190)
.++|||+|++.. .+.+++++|++.|++|+++++++......++++|..|..| . + .+.+.++++
T Consensus 4 ~~~VLI~G~~~~----------~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~ 73 (389)
T PRK06849 4 KKTVLITGARAP----------AALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQ 73 (389)
T ss_pred CCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHH
Confidence 469999999853 3789999999999999999999876655567788887543 2 2 367889999
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHH-hhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHH
Q 001014 165 KERPDALLPTMGGQTALNLAVALAE-SGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISI 243 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~-~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~ 243 (1190)
++++|+|+|+.+.. ..+++ .+.++. ++.+++++.++++.+.||..|+++++++|+|+|++..+++.+++.++
T Consensus 74 ~~~id~vIP~~e~~------~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~ 146 (389)
T PRK06849 74 RENIDLLIPTCEEV------FYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNF 146 (389)
T ss_pred HcCCCEEEECChHH------HhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Confidence 99999999998743 12222 223333 57888999999999999999999999999999999999999999888
Q ss_pred HHHc-CCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeee
Q 001014 244 ANEI-GEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIEN 322 (1190)
Q Consensus 244 ~~~i-g~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~ 322 (1190)
..+. + ||+|+||..+.+|.|+.++.+.+++... ..+...++++||||+| .|+++.++.. +|++...+....
T Consensus 147 ~~~~~~-~P~vlKP~~~~~~~~v~~~~~~~~l~~~-----~~~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~ 218 (389)
T PRK06849 147 MFKTPH-TPYVLKPIYSRFVRRVDLLPKEAALKEL-----PISKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKP 218 (389)
T ss_pred hhcCCC-CcEEEEeCcccCCCeEEEecCHHHhccc-----ccCCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeec
Confidence 7776 8 9999999999999999999885544321 1122356999999999 8998888774 577766554322
Q ss_pred eCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 323 VDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 323 ~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
... ...+-.+...|.. ..++.+.+.++++++|+. |.+++||++++ +|++|+||||||++++.++.
T Consensus 219 ~~~--~~~~~~~~~~~~~------~~~l~~~~~~~~~~l~~~-G~~~~df~~~~-~g~~~~iEiNpR~~~g~~l~ 283 (389)
T PRK06849 219 EYC--AGSGAQIAFQPIN------HPRIEEFVTHFVKELNYT-GQISFDFIETE-NGDAYPIECNPRTTSGLHLF 283 (389)
T ss_pred ccc--CCCCceeEeEECC------cHHHHHHHHHHHHhcCce-eEEEEEEEECC-CCCEEEEEecCCCCceeEEc
Confidence 111 1112233333332 357899999999999996 99999999986 88999999999999987664
No 104
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.96 E-value=1.6e-27 Score=276.05 Aligned_cols=301 Identities=20% Similarity=0.249 Sum_probs=219.5
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCC-cCcc------cc--CCcceeecCCc-HHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPET-VSTD------YD--TSDRLYFEPLT-VED 709 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~-~s~~------~~--~ad~~~~~p~~-~e~ 709 (1190)
++||.||=||. +.|++-| +..++++|.+.||+++.++-+.+. +... .. ........|.. ...
T Consensus 3 ~~~i~vl~GG~-----S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (343)
T PRK14568 3 RIKVGILFGGC-----SEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHG 77 (343)
T ss_pred CcEEEEEECCC-----CCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeecccccccc
Confidence 56898888776 4566655 778889999999999988765431 1000 00 00011111100 000
Q ss_pred HHHH----hhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC
Q 001014 710 VLNV----IDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS 783 (1190)
Q Consensus 710 v~~i----~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g 783 (1190)
+... .+..++|.|++...|. +.-.+...|+ ..| ++++|+++.++.+++||..++++|+++|
T Consensus 78 ~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle----------~~g---ipy~G~~~~asai~~DK~~~k~~l~~~G 144 (343)
T PRK14568 78 LLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLE----------LSG---IPYVGCDIQSSALCMDKSLAYIVAKNAG 144 (343)
T ss_pred ccccCccccccccCCEEEEcCCCCCCCchHHHHHHH----------HcC---CCccCCCHHHHHHHhCHHHHHHHHHHcC
Confidence 0000 1335689998886654 3445666777 889 9999999999999999999999999999
Q ss_pred CCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeE
Q 001014 784 IEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDA 863 (1190)
Q Consensus 784 Ip~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v 863 (1190)
||+|+|..+.+.++.. .+.++||+||||..+++|.|+.+|+|.+||.++++.+... +..+|||+|| .|+|+++.+
T Consensus 145 Ip~p~~~~~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I-~G~E~sv~v 219 (343)
T PRK14568 145 IATPAFWTVTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY--DSKVLIEEAV-VGSEVGCAV 219 (343)
T ss_pred cCcCCEEEEECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEECCc-CCEEEEEEE
Confidence 9999999887765532 3578999999999999999999999999999999987654 4689999999 799999999
Q ss_pred EecCCCcEEEEeeeeeeeccccc-----------ccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec
Q 001014 864 LADSCGNVVIGGIMEHIEQAGVH-----------SGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT 932 (1190)
Q Consensus 864 ~~d~~G~v~~~~i~e~~~~~g~~-----------~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~ 932 (1190)
+.++. ......+.+.....+.+ .+......|+ .++++..+++++++.+++++||++|++++||+++.
T Consensus 220 l~~~~-~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~ 297 (343)
T PRK14568 220 LGNGA-DLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPA-DISAEERSRVQETAKAIYRALGCRGLARVDMFLQE 297 (343)
T ss_pred EcCCC-CcceecceEEecCCCccchhhhhccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC
Confidence 97643 23222222211111111 1112223455 69999999999999999999999999999999987
Q ss_pred CCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 933 SGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 933 ~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+|++||+||||+++.+ +|....+.|+++.++.-+++
T Consensus 298 ~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~li 337 (343)
T PRK14568 298 DGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDRLV 337 (343)
T ss_pred CCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999875 34456788999888877654
No 105
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.96 E-value=4.7e-27 Score=272.37 Aligned_cols=301 Identities=17% Similarity=0.189 Sum_probs=218.9
Q ss_pred cEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCC-cCccccCCcceeecC---CcHHHHH-----
Q 001014 644 KKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPET-VSTDYDTSDRLYFEP---LTVEDVL----- 711 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~-~s~~~~~ad~~~~~p---~~~e~v~----- 711 (1190)
.||+||=||. +.|.+-| +..++++|++.||+++.+..+.+. +.... ..+..|..+ ...+.+.
T Consensus 2 ~~i~vl~GG~-----S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (347)
T PRK14572 2 AKIAVFFGGS-----STEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPT-VYRPSIPDESGNSEDLFLEEFQKA 75 (347)
T ss_pred cEEEEEECCC-----CcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecc-cccccccccccccccccccccccc
Confidence 4788887776 4566655 778889999999999877644321 11000 001011000 0000011
Q ss_pred ------HHhhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC
Q 001014 712 ------NVIDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS 783 (1190)
Q Consensus 712 ------~i~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g 783 (1190)
......++|.+++...|. +.-.+...|+ ..| +++.|+++.++.+++||..++++|+++|
T Consensus 76 ~~~~~~~~~~~~~~d~~f~~~hg~~gEdg~iq~~le----------~~g---ipy~Gs~~~a~~i~~DK~~~k~~l~~~G 142 (347)
T PRK14572 76 NGVSEPADISQLDADIAFLGLHGGAGEDGRIQGFLD----------TLG---IPYTGSGVLASALAMDKTRANQIFLQSG 142 (347)
T ss_pred ccccccccccccCcCEEEEecCCCCCCCcHHHHHHH----------HcC---cCcCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence 111223577777666544 3335667777 889 9999999999999999999999999999
Q ss_pred CCCCCceeec------CHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcc
Q 001014 784 IEQPKGGIAK------SEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAI 857 (1190)
Q Consensus 784 Ip~p~~~~~~------s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~ 857 (1190)
||+|++..+. +.+++.+..+.++||+||||..+++|.|+.+|+|.+||+.+++.++.. +.++|||+|| .|+
T Consensus 143 I~~p~~~~~~~~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~--~~~vlVEefI-~G~ 219 (347)
T PRK14572 143 QKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES--DSKVMSQSFL-SGT 219 (347)
T ss_pred CCCCCEEEEEccccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEEcCc-ccE
Confidence 9999998774 334444556679999999999999999999999999999999987643 5679999999 799
Q ss_pred eEEEeEEecCC-C--cEEEEeeeeeeecccc-------cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEE
Q 001014 858 EIDVDALADSC-G--NVVIGGIMEHIEQAGV-------HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQ 927 (1190)
Q Consensus 858 E~~v~v~~d~~-G--~v~~~~i~e~~~~~g~-------~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ie 927 (1190)
|++|.++.+.. | .++..++.|.....+. +.|......|+ .++++..+++++++.+++++||++|++++|
T Consensus 220 E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD 298 (347)
T PRK14572 220 EVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPA-RISDQEMKRVQELAIRAHESLGCKGYSRTD 298 (347)
T ss_pred EEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeEEE
Confidence 99999997422 3 3445555554322111 11222223454 689999999999999999999999999999
Q ss_pred EEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 928 YAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 928 f~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
|++ .+|++||+|+|++++-+ .|...++.|+++.++.-+++
T Consensus 299 ~~~-~~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~ii 342 (347)
T PRK14572 299 FII-VDGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDLI 342 (347)
T ss_pred EEE-ECCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 999 57899999999999864 56677889999999887664
No 106
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.95 E-value=1.3e-26 Score=268.16 Aligned_cols=301 Identities=16% Similarity=0.194 Sum_probs=219.7
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHH-HhCCCeEEEecCCCC--CcCcccc--CCcceeecC----Cc----
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSL-QSAGYETIMMNSNPE--TVSTDYD--TSDRLYFEP----LT---- 706 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al-~~~G~~vi~v~~~p~--~~s~~~~--~ad~~~~~p----~~---- 706 (1190)
+++|.||-||. +.|+|-| +.+++++| .+.+|+++.++-+.+ .+..... ..+.....+ ..
T Consensus 2 ~~~v~vl~GG~-----S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T PRK14570 2 KKNLMLIFGGV-----SFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLIKRDVLPIVSLIPG 76 (364)
T ss_pred CcEEEEEECCC-----CcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCcccccccccccccccccccccc
Confidence 56899998776 5677766 66677787 567999987765433 1110000 000000000 00
Q ss_pred HHHHHHHhhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCC
Q 001014 707 VEDVLNVIDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSI 784 (1190)
Q Consensus 707 ~e~v~~i~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gI 784 (1190)
...+.. .+..++|.|++...|. +...+...|+ ..| +++.|++..++.+++||..++++|+++||
T Consensus 77 ~~~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle----------~~g---iPy~Gs~~~asal~~DK~~tK~~l~~~GI 142 (364)
T PRK14570 77 CGIFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLK----------VMD---IPCVGAGILGSAISINKYFCKLLLKSFNI 142 (364)
T ss_pred cccccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHH----------HcC---CCccCCCHHHHHHHHCHHHHHHHHHHcCC
Confidence 000000 1223689998887765 3335666677 889 99999999999999999999999999999
Q ss_pred CCCCceeec------CHHHHHHH-HHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcc
Q 001014 785 EQPKGGIAK------SEADALAI-AKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAI 857 (1190)
Q Consensus 785 p~p~~~~~~------s~~e~~~~-~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~ 857 (1190)
|+|++..+. +.+++.+. ...+|||+||||..+++|.|+.+++|.+||..+++.++.. +.++|||+|| .|+
T Consensus 143 pt~p~~~~~~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~--~~~vlVEefI-~Gr 219 (364)
T PRK14570 143 PLVPFIGFRKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY--DLTVVIEKFI-EAR 219 (364)
T ss_pred CCCCEEEEeccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEECCc-CCE
Confidence 999987664 34455433 4679999999999999999999999999999999988754 4679999999 699
Q ss_pred eEEEeEEecCCCcEEEEeeeeeeecc-ccc---------cccccc-ccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeE
Q 001014 858 EIDVDALADSCGNVVIGGIMEHIEQA-GVH---------SGDSAC-MIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNC 926 (1190)
Q Consensus 858 E~~v~v~~d~~G~v~~~~i~e~~~~~-g~~---------~gd~~~-~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~i 926 (1190)
|++|.++.+. ...+.++.|..... ..+ .+.+.. .+|+ .+++++.+++++++.+++++||++|+++|
T Consensus 220 Ei~v~Vlg~~--~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~Rv 296 (364)
T PRK14570 220 EIECSVIGNE--QIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPA-HLDTKHLLDIKEYAFLTYKNLELRGMARI 296 (364)
T ss_pred EEEEEEECCC--CceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 9999999763 34445555544221 111 122222 2354 69999999999999999999999999999
Q ss_pred EEEEec-CCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 927 QYAITT-SGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 927 ef~~d~-~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
||++++ +|++||+|+||++|-+ .|...++.|+++.++.-+++
T Consensus 297 Df~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li 343 (364)
T PRK14570 297 DFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLI 343 (364)
T ss_pred EEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 999974 5899999999999864 56667788999998887665
No 107
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.95 E-value=7.9e-27 Score=270.91 Aligned_cols=245 Identities=13% Similarity=0.181 Sum_probs=196.7
Q ss_pred HHHHHHHHcC--CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeee--
Q 001014 158 LVEQVLEKER--PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI-- 233 (1190)
Q Consensus 158 ~v~~i~~~~~--~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~-- 233 (1190)
.+.+.++..+ +.+++...+ ..+ +++|+..|++++||+.++++++.||..+|++++++|||+|++..
T Consensus 95 ~~~~~~~~~~~~~~~~fl~~D------G~i----Q~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~ 164 (493)
T PRK06524 95 ETLEFIKRRGPGGKACFVMFD------EET----EALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGR 164 (493)
T ss_pred HHHHHHHhhCCCCceEEecCC------HHH----HHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCccccc
Confidence 4555666554 455655444 334 77899999999999999999999999999999999999999987
Q ss_pred cCCHHHHHHHHHH--cCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCC
Q 001014 234 GNTLDECISIANE--IGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLA 311 (1190)
Q Consensus 234 v~s~~e~~~~~~~--ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~ 311 (1190)
+.+.+++.+.++. +| |||||||+.|++|.|+.+|++.+||+++++.+.. ...++||+||.| +|++|+++++.+
T Consensus 165 ~~~~eel~~~~~~~~IG-yPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe~I~G-rEitVev~vd~d 239 (493)
T PRK06524 165 VDSYDELSALAHGAGLG-DDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMKRIRN-VEVCIEACVTRH 239 (493)
T ss_pred CCCHHHHHHHHHhccCC-CcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEeccCc-EEEEEEEEEeCC
Confidence 4667777666665 99 9999999999999999999999999998887653 357999999999 999999999888
Q ss_pred CcEEEEEeeeeeC--CCC-cccccE-EEEecCCCCCHHHHHHHHHHHHHHHHHh---CCccceEEEEEEEecCCCcEEEE
Q 001014 312 DNVVIICSIENVD--PMG-VHTGDS-ITVAPAQTLTDKEYQRLRDYSIAIIREI---GVECGGSNVQFAVNPVDGEVMVI 384 (1190)
Q Consensus 312 g~~~~~~~~e~~~--~~g-~~~g~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~~l---g~~~G~~~vef~~~~~~g~~~vi 384 (1190)
|+++.....+.+. ... +..|.. ....|+. ++++..+++++.|.++.++| |+. |+++|||+++.++|++||+
T Consensus 240 G~Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~-Gv~rVDFfvd~ddgevYfn 317 (493)
T PRK06524 240 GTVIGPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYR-GYFEVDLLHDLDADELYLG 317 (493)
T ss_pred CCEEeccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCE-EEEEEEEEEECCCCeEEEE
Confidence 7765421111110 000 121222 3567887 99999999999999999998 896 9999999998646889999
Q ss_pred EeCCCCCCchHHHHHH----hCCCHHHHHHHHHcCCCCC
Q 001014 385 EMNPRVSRSSALASKA----TGFPIAKMAAKLSVGYSLD 419 (1190)
Q Consensus 385 EiNpR~~gs~~l~~~a----tG~~l~~~~~~~alG~~l~ 419 (1190)
|||||++|.+.++.++ .+++++..+++..+|.|.+
T Consensus 318 EINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 318 EVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred EEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 9999999987776553 4678889999999998865
No 108
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.95 E-value=2.4e-26 Score=261.92 Aligned_cols=274 Identities=19% Similarity=0.241 Sum_probs=211.6
Q ss_pred EEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 645 KVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
||.||=||. +.|.+.| +.+++++|++.|+++..++.+.+- +..+.+..++|.
T Consensus 2 ~v~v~~gg~-----s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~--------------------~~~~~~~~~~D~ 56 (299)
T PRK14571 2 RVALLMGGV-----SREREISLRSGERVKKALEKLGYEVTVFDVDEDF--------------------LKKVDQLKSFDV 56 (299)
T ss_pred eEEEEeCCC-----CCCccchHHHHHHHHHHHHHcCCeEEEEccCchH--------------------HHHhhhccCCCE
Confidence 466666665 3455554 778889999999999999754220 001112246898
Q ss_pred cccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 722 IIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 722 Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|++...|. ....+...++ ..| ++++|+++.++.++.||..++++|+ .|||+|++..+.+..
T Consensus 57 v~~~~~g~~ge~~~~~~~le----------~~g---ip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~~~--- 119 (299)
T PRK14571 57 VFNVLHGTFGEDGTLQAILD----------FLG---IRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKEFM--- 119 (299)
T ss_pred EEEeCCCCCCCccHHHHHHH----------HcC---CCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEechh---
Confidence 88776655 2345666666 889 9999999999999999999999998 589999998886532
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH 879 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~ 879 (1190)
....++||+||||..+++|+||.+|+|.+||.+++++++.. ..+++||+|| .|+|++|.+++++ |...+.++.+.
T Consensus 120 -~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~vlVEeyI-~G~E~sv~vl~~~-~~~~vl~~~e~ 194 (299)
T PRK14571 120 -KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR--YGSVIVQEYI-PGREMTVSILETE-KGFEVLPILEL 194 (299)
T ss_pred -hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh--CCcEEEEccc-cceEEEEEEEcCC-CCeeeeceEEE
Confidence 23568999999999999999999999999999998876543 3579999999 7999999999984 45566777665
Q ss_pred eeccc-------ccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC----
Q 001014 880 IEQAG-------VHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT---- 948 (1190)
Q Consensus 880 ~~~~g-------~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s---- 948 (1190)
....+ .+.|......|+ .++++..+++++.+.+++++||++|+++|||++ ++|++||+|+||+++-+
T Consensus 195 ~~~~~~~~~~~k~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~-~~~~~~viEiN~~Pg~~~~s~ 272 (299)
T PRK14571 195 RPKRRFYDYVAKYTKGETEFILPA-PLNPEEERLVKETALKAFVEAGCRGFGRVDGIF-SDGRFYFLEINTVPGLTELSD 272 (299)
T ss_pred ecCCCccccccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE-ECCcEEEEEeeCCCCCCccCH
Confidence 43221 112222223354 689999999999999999999999999999999 57899999999999864
Q ss_pred hhhhhcccCCCHHHHHHHH
Q 001014 949 VPFVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 949 ~~~~~~~~G~~l~~~~~~~ 967 (1190)
.+...+..|+++.++...+
T Consensus 273 ~~~~~~~~G~~~~~li~~i 291 (299)
T PRK14571 273 LPASAKAGGIEFEELVDII 291 (299)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 4445667899998866554
No 109
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.95 E-value=1.7e-26 Score=278.52 Aligned_cols=355 Identities=19% Similarity=0.283 Sum_probs=290.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeE----------EEecCCC-CCcCccccCCcceeecC------
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYET----------IMMNSNP-ETVSTDYDTSDRLYFEP------ 704 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~v----------i~v~~~p-~~~s~~~~~ad~~~~~p------ 704 (1190)
..+||||...|- +++.++++.|+.-|++ .|..++. ...+...+++|.+.-.|
T Consensus 53 vI~kILIAnNGi-----------AAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnN 121 (2196)
T KOG0368|consen 53 VIKRILIANNGI-----------AAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNN 121 (2196)
T ss_pred eeEEEEEecccH-----------HHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCC
Confidence 457999998776 4899999999866552 2333221 12233456888865555
Q ss_pred --CcHHHHHHHhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHH
Q 001014 705 --LTVEDVLNVIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKE 781 (1190)
Q Consensus 705 --~~~e~v~~i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~ 781 (1190)
.+++-+++++++.++|+|.+++|.. ++-.|.+.|. +.| |.++||+..++....||....-.++.
T Consensus 122 NyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~----------~~~---IiFiGPP~~aM~sLGDKI~STIvAQs 188 (2196)
T KOG0368|consen 122 NYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLS----------ANG---IIFIGPPASAMRALGDKIASTIIAQS 188 (2196)
T ss_pred CcccHHHHHHHHHhcccceEeecccccccCcchHHHHH----------hcC---cEEECCchHHHHHhcchHHHHHHHHh
Confidence 3489999999999999999999976 5568889998 899 99999999999999999999999999
Q ss_pred cCCCCCCc--------------------------eeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHH
Q 001014 782 LSIEQPKG--------------------------GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYL 835 (1190)
Q Consensus 782 ~gIp~p~~--------------------------~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~ 835 (1190)
+|+|+.+| ..+.+.+|..++++.+|||+++|.+.|+||+|++.|++.+|+...+
T Consensus 189 a~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf 268 (2196)
T KOG0368|consen 189 AGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALF 268 (2196)
T ss_pred cCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHH
Confidence 99999887 2346788999999999999999999999999999999999999999
Q ss_pred HHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeeccccccccccccc-----------CCCCCCHHHH
Q 001014 836 ENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMI-----------PTKTISSSCL 904 (1190)
Q Consensus 836 ~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~-----------p~~~l~~~~~ 904 (1190)
++.....+..|+++.+..+..++++|+.++|..|+++...- .+|++ |....+.+..
T Consensus 269 ~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfg-------------RDCSiQRRhQKIIEEAPatIap~etf 335 (2196)
T KOG0368|consen 269 KQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFG-------------RDCSIQRRHQKIIEEAPATIAPPETF 335 (2196)
T ss_pred HHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeEeec-------------ccchHHHHHHHHHhhCCcccCCHHHH
Confidence 99988889999999999999999999999999999876543 33333 6767788999
Q ss_pred HHHHHHHHHHHHHcCCCcceeEEEEEe-cCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCC------
Q 001014 905 DTISSWTIKLAKRLNVCGLMNCQYAIT-TSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLG------ 977 (1190)
Q Consensus 905 ~~i~~~a~~i~~~Lg~~G~~~ief~~d-~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~------ 977 (1190)
+++++.|.++++..||.+...||+++. ++|++||+|.|||++-.+|-++..+|+|++...+++++|.||..+.
T Consensus 336 ~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lY 415 (2196)
T KOG0368|consen 336 KKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLY 415 (2196)
T ss_pred HHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHc
Confidence 999999999999999999999999997 5899999999999999999999999999999999999999987642
Q ss_pred -CCc------------cccCCeeEEeeccCCCcccCCCceeeCC----c-----------------------ccccceee
Q 001014 978 -FTK------------EVIPKHVSVKEAVLPFEKFQGCDVLLGP----E-----------------------MRSTGEVM 1017 (1190)
Q Consensus 978 -~~~------------~~~~~~~~vk~~~~~~~~~~~~~~~lg~----~-----------------------~rs~G~v~ 1017 (1190)
+.. -+.++...+.+.+.+.+.-.|..|--|+ . --..|||-
T Consensus 416 g~~~~GdS~idfe~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiF 495 (2196)
T KOG0368|consen 416 GLEPTGDSPIDFENAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIF 495 (2196)
T ss_pred CCCCCCCCCCChhhccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceee
Confidence 111 2356667777777744433333333233 0 11367999
Q ss_pred eeeCCHHHHHHHHHHH
Q 001014 1018 GIDMSFPIAFAKAQIA 1033 (1190)
Q Consensus 1018 ~~g~~~~eA~~ka~~~ 1033 (1190)
++|.|..||...--.+
T Consensus 496 a~Ge~R~eAi~nMv~a 511 (2196)
T KOG0368|consen 496 AFGESRQEAIANMVVA 511 (2196)
T ss_pred eecCcHHHHHHHHHHH
Confidence 9999999998754443
No 110
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.95 E-value=7e-26 Score=290.33 Aligned_cols=304 Identities=16% Similarity=0.145 Sum_probs=227.0
Q ss_pred CCcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCC-cCccccCCcc----eeecCCcHHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPET-VSTDYDTSDR----LYFEPLTVEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~-~s~~~~~ad~----~~~~p~~~e~v~~i 713 (1190)
+++||.||=||. +.|+|.| +.+++++|++.||+|+.++-+.+. +.......+. ....... ..+.
T Consensus 450 ~~~~i~vl~GG~-----S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 521 (809)
T PRK14573 450 KKLSLGLVCGGK-----SCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLS-SEIA-- 521 (809)
T ss_pred CCcEEEEEECCC-----CCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccc-hhhh--
Confidence 467899988776 6788977 888899999999999988765432 1110000000 0000010 1111
Q ss_pred hhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee
Q 001014 714 IDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI 791 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~ 791 (1190)
-...++|.|++...|. +.-.+...|+ ..| +++.|+++.+..+++||..+|++|+++|||+|+|..
T Consensus 522 ~~~~~~d~vf~~lhG~~gedg~iq~~le----------~~g---ipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~ 588 (809)
T PRK14573 522 QALAKVDVVLPILHGPFGEDGTMQGFLE----------IIG---KPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQP 588 (809)
T ss_pred hccccCCEEEEcCCCCCCCChHHHHHHH----------HcC---CCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE
Confidence 0124689988877655 3445667777 889 999999999999999999999999999999999988
Q ss_pred ecC------HH-HHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEE
Q 001014 792 AKS------EA-DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDAL 864 (1190)
Q Consensus 792 ~~s------~~-e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~ 864 (1190)
+.. .+ .+.++.+.+|||+||||..+++|.|+.+|+|.+||.+++++++.. +.++|||+|+.+|+|++|.++
T Consensus 589 ~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~i~~grEi~v~vl 666 (809)
T PRK14573 589 LTLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY--DTDVFVEESRLGSREIEVSCL 666 (809)
T ss_pred EechhcccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeccCCCEEEEEEEE
Confidence 763 22 234566789999999999999999999999999999999987643 568999999877899999999
Q ss_pred ecCCCcEEEEeeeeeeeccccc--------cccc-ccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCC
Q 001014 865 ADSCGNVVIGGIMEHIEQAGVH--------SGDS-ACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGD 935 (1190)
Q Consensus 865 ~d~~G~v~~~~i~e~~~~~g~~--------~gd~-~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~ 935 (1190)
.++.+......+.+.....++. .|.. ....+|..+++++.+++++++.++.++||++|+++|||+++.+|+
T Consensus 667 ~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~ 746 (809)
T PRK14573 667 GDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGN 746 (809)
T ss_pred eCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCC
Confidence 9866544343443332211111 1111 122234479999999999999999999999999999999987899
Q ss_pred EEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 936 VYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 936 ~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+||+|+|||+|-+ +|......|+++.++.-+++
T Consensus 747 ~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ii 783 (809)
T PRK14573 747 FWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQLI 783 (809)
T ss_pred EEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999975 45566788999998887764
No 111
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.95 E-value=4.3e-26 Score=264.82 Aligned_cols=245 Identities=17% Similarity=0.218 Sum_probs=192.7
Q ss_pred HHHHHHhhhcCC--CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 708 EDVLNVIDLERP--EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 708 e~v~~i~~~~~~--d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
.++++.++...+ .+++..++| .++..|+ ..| ++++||+++++.+++||..++++++++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~fl~~DG----~iQ~lLE----------~lG---Ipy~gP~a~asai~mDK~~tK~l~~~aGIP 156 (493)
T PRK06524 94 PETLEFIKRRGPGGKACFVMFDE----ETEALAR----------QAG---LEVMHPPAELRHRLDSKIVTTRLANEAGVP 156 (493)
T ss_pred HHHHHHHHhhCCCCceEEecCCH----HHHHHHH----------HCC---CeEECcCHHHHHHhCCHHHHHHHHHHcCCC
Confidence 455666666544 455554443 3456667 889 999999999999999999999999999999
Q ss_pred CCCcee--ecCHHHHHHHHHH--hCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEE
Q 001014 786 QPKGGI--AKSEADALAIAKE--IGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDV 861 (1190)
Q Consensus 786 ~p~~~~--~~s~~e~~~~~~~--igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v 861 (1190)
+|++.. +.+.+++.+.++. +||||||||+.+++|+|+.+|++.+|++.++++++. ...++||+|| .|+|++|
T Consensus 157 tpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe~I-~GrEitV 232 (493)
T PRK06524 157 SVPHVLGRVDSYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMKRI-RNVEVCI 232 (493)
T ss_pred CCCcccccCCCHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEecc-CcEEEEE
Confidence 999987 4677777766665 999999999999999999999999999998887543 3569999999 7999999
Q ss_pred eEEecCCCcEEEEeeeeee---eccccccccc-ccccCCCCCCHHHHHHHHHHHHHHHHHc---CCCcceeEEEEEec-C
Q 001014 862 DALADSCGNVVIGGIMEHI---EQAGVHSGDS-ACMIPTKTISSSCLDTISSWTIKLAKRL---NVCGLMNCQYAITT-S 933 (1190)
Q Consensus 862 ~v~~d~~G~v~~~~i~e~~---~~~g~~~gd~-~~~~p~~~l~~~~~~~i~~~a~~i~~~L---g~~G~~~ief~~d~-~ 933 (1190)
+++++.+|.+....+.+.+ +-.....|.. ....|+ .+++++.+++++++.+++++| |++|+++|||+++. +
T Consensus 233 ev~vd~dG~Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA-~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~dd 311 (493)
T PRK06524 233 EACVTRHGTVIGPAMTSLVGYPELTPYRGGWCGNDIWPG-ALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDA 311 (493)
T ss_pred EEEEeCCCCEEeccccccccceEEEEccCCeEEEEEccC-CCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCC
Confidence 9999888876543222211 1000111111 123455 799999999999999999998 89999999999974 6
Q ss_pred CCEEEEEEccCCCCChhhhhc----ccCCCHHHHHHHHHcCCCCC
Q 001014 934 GDVYLLEANPRASRTVPFVSK----AIGHPLAKYAALVMSGKSLN 974 (1190)
Q Consensus 934 g~~~viEiNpR~~~s~~~~~~----~~G~~l~~~~~~~~lG~~l~ 974 (1190)
|++||+|||||++++++++.. ..+.+++.++++..+|.|..
T Consensus 312 gevYfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 312 DELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred CeEEEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 899999999999998776443 25778888999999998875
No 112
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.94 E-value=8.3e-25 Score=245.85 Aligned_cols=375 Identities=18% Similarity=0.170 Sum_probs=278.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCC-CccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMT-DPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~-~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
.+|||||+| ++|| .++..|++. -+.-+.+.+.....++ +..-.+..-+.+-|.+.+.++|+++++..
T Consensus 3 ~~vLviGsG------gREH-----al~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~l 71 (788)
T KOG0237|consen 3 VNVLVIGSG------GREH-----ALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINL 71 (788)
T ss_pred eEEEEEcCC------chHh-----HHHHHhhcCCccceEEEccCCCCcccCccccCcccccChhhHHHHHHHHHHcceeE
Confidence 489999999 7898 788888876 4556666665555443 22222233466668899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+++.+ .++...+ .+.|.+.|++++||+.+++++..+|..+|++|.++|||++.|..+++.+++..|.+..+..
T Consensus 72 VvvGPE--~PL~~Gl----~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~ 145 (788)
T KOG0237|consen 72 VVVGPE--LPLVAGL----ADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDK 145 (788)
T ss_pred EEECCc--hhhhhhh----hhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCc
Confidence 999887 4444444 5678899999999999999999999999999999999999999999999999999998823
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC-
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP- 325 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~- 325 (1190)
++|||...-.+|+||.+..+.+|.-++++.++.. +.+.+++|||+++| .|+|+-.+.|+. .+..++..|.+.+
T Consensus 146 ~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~-s~~~mp~aQDHKRl 223 (788)
T KOG0237|consen 146 ALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGY-SVRPLPPAQDHKRL 223 (788)
T ss_pred ceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEEecCc-ccccCCcccchhhh
Confidence 5999999999999999999999999999988732 23678999999999 999999999865 5555566665443
Q ss_pred ----CCcccccEEEEecCCCCCHHHHHHHHHHHH-HHHH-----HhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc-h
Q 001014 326 ----MGVHTGDSITVAPAQTLTDKEYQRLRDYSI-AIIR-----EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS-S 394 (1190)
Q Consensus 326 ----~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~-~i~~-----~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs-~ 394 (1190)
.|++||.+..++|++..+++..+.+.+... +.++ .+.| +|+...-+++++ +.|.++|.|.||+.- .
T Consensus 224 ~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y-~GVLfaGlMl~k--~~P~vLEfN~RFGDPEt 300 (788)
T KOG0237|consen 224 GDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPY-VGVLFAGLMLTK--DGPKVLEFNVRFGDPET 300 (788)
T ss_pred cCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCce-eeEEeeeeEEec--CCccEEEEecccCCchh
Confidence 379999999999999888888877765443 3333 3467 599999999995 459999999999983 4
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCCCCCCCccccC-----------CCC--------ccccCCcCeEEeeeceeeecccCCC
Q 001014 395 ALASKATGFPIAKMAAKLSVGYSLDQIPNDITK-----------KTP--------ASFEPSIDYVVTKIPRFAFEKFPGS 455 (1190)
Q Consensus 395 ~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~-----------~~~--------~~f~p~~~~v~~k~p~~~~~~~~~~ 455 (1190)
.......--||++.+...+ ...|+.+...+.. ..| ..+.|..+....+ .|+-..--.
T Consensus 301 Qv~l~lLesDL~evi~a~~-~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~r--VFHAGTs~~- 376 (788)
T KOG0237|consen 301 QVLLPLLESDLAEVILACC-NGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTR--VFHAGTSLD- 376 (788)
T ss_pred hhhHHHHHhHHHHHHHHHh-hCCccccCccccccceEEEEEecCCCCCCCcCCcccccCcccCCCcce--EEecccccc-
Confidence 3334445558999877755 4456655433321 111 1122332211111 121111001
Q ss_pred CcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccC
Q 001014 456 EPLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSG 493 (1190)
Q Consensus 456 ~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g 493 (1190)
+..+-++..++-.|.+.+.+.++|.++|+..+. +.+.|
T Consensus 377 ss~vvTNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg 415 (788)
T KOG0237|consen 377 SSNVVTNGGRVLSVTATGDDLESAAETAYKAVQVISFSG 415 (788)
T ss_pred ccceEecCceEEEEEecCchHHHHHHHHHHHheEEeecc
Confidence 124556666788999999999999999999986 45443
No 113
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.93 E-value=5.7e-25 Score=225.37 Aligned_cols=170 Identities=21% Similarity=0.342 Sum_probs=144.9
Q ss_pred HHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEe-cCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcc
Q 001014 779 IKELSIEQPKGGIAKSEADALAIAKEIGYPVVVR-PSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAI 857 (1190)
Q Consensus 779 l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvK-P~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~ 857 (1190)
|+++|||+|+|..+.+.+++..+++++|||+|+| +..|.+|+|..++++.+|+..+++.. ...++++|+||+..+
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~----~~~~~ilE~~v~f~~ 76 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL----GGGPCILEEFVPFDR 76 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT----TTSCEEEEE---ESE
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc----CCCcEEEEeccCCcE
Confidence 6899999999999999999999999999999999 56667999999999999999998874 567999999999999
Q ss_pred eEEEeEEecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCC-E
Q 001014 858 EIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGD-V 936 (1190)
Q Consensus 858 E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~-~ 936 (1190)
|++|.++++.+|++.++++.|+.+..|+. .....|+ .+++++.+++++++.++++.|++.|++.||||++++|+ +
T Consensus 77 EiSvivaR~~~G~~~~yp~~en~~~~~il---~~s~~Pa-~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~g~~v 152 (172)
T PF02222_consen 77 EISVIVARDQDGEIRFYPPVENVHRDGIL---HESIAPA-RISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKDGDEV 152 (172)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEETTEE---EEEEESC-SS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTSTEE
T ss_pred EEEEEEEEcCCCCEEEEcCceEEEECCEE---EEEECCC-CCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecCCCEE
Confidence 99999999999999999999999776554 2333455 69999999999999999999999999999999987887 9
Q ss_pred EEEEEccCCCCChhhhhccc
Q 001014 937 YLLEANPRASRTVPFVSKAI 956 (1190)
Q Consensus 937 ~viEiNpR~~~s~~~~~~~~ 956 (1190)
||+|+.||+|++.+++..+|
T Consensus 153 ~vNEiaPRpHnSGh~Ti~~c 172 (172)
T PF02222_consen 153 LVNEIAPRPHNSGHWTIEAC 172 (172)
T ss_dssp EEEEEESS--GGGGGHHHHB
T ss_pred EEEeccCCccCcccEeeecC
Confidence 99999999999999976543
No 114
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.4e-23 Score=233.92 Aligned_cols=290 Identities=22% Similarity=0.301 Sum_probs=232.4
Q ss_pred CEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
++|+|+-+|. ++||+ .|+.+++++++..|+++.-++......+....... . ..-.++|
T Consensus 3 ~~vavl~gG~-----s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~ 63 (317)
T COG1181 3 MKVAVLLGGR-----SAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVT---------K-----RVLQKAD 63 (317)
T ss_pred eEEEEeeCCc-----cccceEEEecHHHHHHHHhhcCceeEEEeccccceEEeccccc---------h-----hhcccCC
Confidence 4788888774 89999 57999999999999999999877653321111100 0 1224789
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCH----HHHHHHHH
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTL----DECISIAN 245 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~----~e~~~~~~ 245 (1190)
.++|..+|..+++.++ +++|+.+|+|++|++..+...+.||..+|.+++..|+|++++..++.. ....++..
T Consensus 64 vvfp~lhG~~gEDg~i----qg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~ 139 (317)
T COG1181 64 VVFPVLHGPYGEDGTI----QGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEE 139 (317)
T ss_pred EEEEeCCCCCCCCchH----HHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhc
Confidence 9999999999999999 999999999999999999999999999999999999999999888742 33456667
Q ss_pred HcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEee-----
Q 001014 246 EIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSI----- 320 (1190)
Q Consensus 246 ~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~----- 320 (1190)
.++ ||++|||....+|.|+..+++.+|+..+++.++.. +.++++|+|+.| +|+++.++.+.. ....+...
T Consensus 140 ~l~-~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~--d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~~eI~~~ 214 (317)
T COG1181 140 GLG-FPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY--DRDVLREQGITG-REIEVGVLGNDY-EEQALPLGEIPPK 214 (317)
T ss_pred ccC-CCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh--CCceeeccCCCc-ceEEEEecCCcc-cceecCceEEecC
Confidence 889 99999999999999999999999999988888887 679999999999 999999998644 33332221
Q ss_pred --eeeCCC-C-cccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCC--Cch
Q 001014 321 --ENVDPM-G-VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVS--RSS 394 (1190)
Q Consensus 321 --e~~~~~-g-~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~--gs~ 394 (1190)
..+++. + ..+|...+..|+. ++++..++++++|.++++++|.. |++++||++++++|++|++|||+.++ ..|
T Consensus 215 ~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~-g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~s 292 (317)
T COG1181 215 GEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELALRAYKALGCL-GLARVDFFVDDDEGEFVLLEVNTNPGMTAMS 292 (317)
T ss_pred CCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCC-ceEEEEEEEECCCCCEEEEEEeCCCCCcccc
Confidence 233332 2 3446677888987 99999999999999999999997 99999999995458999999996555 333
Q ss_pred --HHHHHHhCCCHHHHHHHH
Q 001014 395 --ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 395 --~l~~~atG~~l~~~~~~~ 412 (1190)
+....+.|++........
T Consensus 293 l~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 293 LFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred cchhhHHHcCCCHHHHHHHH
Confidence 444566677666655443
No 115
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.92 E-value=4.7e-23 Score=234.74 Aligned_cols=278 Identities=22% Similarity=0.271 Sum_probs=202.6
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEe
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip 173 (1190)
|++|++.... -+|+..++++|+++|+++.+++........... .+..++.. .+..++|+|++
T Consensus 2 ~~~i~~~~~s--------~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~-~~~~~~~~---------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPLSCYMNINPA-ASSIHYKG---------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCc--------chhHHHHHHHHHHcCCeEEEEehHHceEecCCC-cccEEECC---------cccCCCCEEEE
Confidence 6888874321 178999999999999999999855321111000 11111110 12237999999
Q ss_pred cCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc-CCCcE
Q 001014 174 TMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI-GEFPL 252 (1190)
Q Consensus 174 ~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i-g~~Pv 252 (1190)
..++....... .. ...|+..| +++++++.++.++.||..++++|+++|+|+|++..+.+.+++.++.+++ + ||+
T Consensus 64 ~~~~~~~~~~~-~~--~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~-~P~ 138 (300)
T PRK10446 64 RIGTAITFYGT-AA--LRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGG-APL 138 (300)
T ss_pred cCCCchhhHHH-HH--HHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCC-CCE
Confidence 88864221111 11 33688889 5667899999999999999999999999999999988888888888777 7 999
Q ss_pred EEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeec---CCCeeeeEEEEEeCCCcEEEEEeeeeeCCC---
Q 001014 253 IIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSL---LGWKEYELEVMRDLADNVVIICSIENVDPM--- 326 (1190)
Q Consensus 253 VVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I---~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~--- 326 (1190)
||||..|++|.|+.++++.+++..+++..... ...++||+|| .| .|+.+.++. +.++. .+++....
T Consensus 139 VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~--~~~~lvQe~I~~~~g-~d~rv~vig---~~~~~--~~~r~~~~~~~ 210 (300)
T PRK10446 139 VVKLVEGTQGIGVVLAETRQAAESVIDAFRGL--NAHILVQEYIKEAQG-CDIRCLVVG---DEVVA--AIERRAKEGDF 210 (300)
T ss_pred EEEECCCCCcccEEEEcCHHHHHHHHHHHHhc--CCCEEEEeeeccCCC-ceEEEEEEC---CEEEE--EEEEecCCCch
Confidence 99999999999999999999999888765544 3579999999 57 899988774 34332 23332211
Q ss_pred --CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCC
Q 001014 327 --GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFP 404 (1190)
Q Consensus 327 --g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~ 404 (1190)
.++.|... .|.. ++ +++.+.|.++++++|+ ++++|||++++ +| +||+|||++++.. .+..++|+|
T Consensus 211 ~~n~~~g~~~--~~~~-l~----~~~~~~a~~a~~alg~--~~~gvD~~~~~-~g-~~vlEvN~~pg~~--~~~~~~g~~ 277 (300)
T PRK10446 211 RSNLHRGGAA--SVAS-IT----PQEREIAIKAARTMAL--DVAGVDILRAN-RG-PLVMEVNASPGLE--GIEKTTGID 277 (300)
T ss_pred hheeccCCee--ccCC-CC----HHHHHHHHHHHHHhCC--CEEEEEEEEcC-CC-cEEEEEECCCChh--hhHHHHCcC
Confidence 23333322 2333 54 4478999999999999 48999999985 45 9999999987543 357889999
Q ss_pred HHHHHHHHHcC
Q 001014 405 IAKMAAKLSVG 415 (1190)
Q Consensus 405 l~~~~~~~alG 415 (1190)
+.+.+++....
T Consensus 278 ~~~~~~~~i~~ 288 (300)
T PRK10446 278 IAGKMIRWIER 288 (300)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 116
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.92 E-value=5.7e-24 Score=224.80 Aligned_cols=180 Identities=27% Similarity=0.438 Sum_probs=140.0
Q ss_pred hccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCC--CC
Q 001014 768 AAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDP--ER 845 (1190)
Q Consensus 768 ~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~--~~ 845 (1190)
++.||..|+++++++|||+|++..+.+.+++.+++..++||+||||..+.||+|+.+++|.+++.++++....... ..
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~ 80 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNG 80 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSS
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988655433 56
Q ss_pred cEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCC-Ccce
Q 001014 846 PVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNV-CGLM 924 (1190)
Q Consensus 846 ~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~-~G~~ 924 (1190)
++++|+|| .|.|++++++.+ +|+++...+.+.....+.+.......-.....+....+++++.+.++++++|+ .|++
T Consensus 81 ~~ivqe~i-~g~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~ 158 (184)
T PF13535_consen 81 PVIVQEYI-PGDEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPPLPEELRDLARKLLRALGYRNGFF 158 (184)
T ss_dssp SEEEEE----SEEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CEHHHHHHHHHHHHHHHHT--SEEE
T ss_pred cEEEEEee-eeeeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecccccccHHHHHHHHHHHHHHcCCceEEE
Confidence 89999999 689999999998 78998888888776544443332111111122333458999999999999999 7999
Q ss_pred eEEEEEecCCCEEEEEEccCCCCCh
Q 001014 925 NCQYAITTSGDVYLLEANPRASRTV 949 (1190)
Q Consensus 925 ~ief~~d~~g~~~viEiNpR~~~s~ 949 (1190)
++||+++.+|++|+||+|||++|+.
T Consensus 159 ~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 159 HIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp EEEEEEETCCEEEEEEEESS--STT
T ss_pred EEEEEEeCCCCEEEEEECccCCCCC
Confidence 9999998788899999999999964
No 117
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.91 E-value=8.6e-24 Score=223.47 Aligned_cols=181 Identities=27% Similarity=0.409 Sum_probs=134.5
Q ss_pred HHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCC--C
Q 001014 210 KAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASL--T 287 (1190)
Q Consensus 210 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~--~ 287 (1190)
++.||..|+++++++|+|+|++..+.+.+++.++...++ ||+||||..+.||.|+.++++.+||.++++.+..... .
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~-~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~ 79 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLG-FPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGN 79 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSS-SSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HS
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC-CCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 478999999999999999999999999999999999999 9999999999999999999999999999988876543 5
Q ss_pred CcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccce
Q 001014 288 SQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGG 367 (1190)
Q Consensus 288 ~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~ 367 (1190)
..+++||||+| .|++++++.. +|.++.+...+.......+.............+....+++++.+.++++++|+.+|+
T Consensus 80 ~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~ 157 (184)
T PF13535_consen 80 GPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPPLPEELRDLARKLLRALGYRNGF 157 (184)
T ss_dssp SSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CEHHHHHHHHHHHHHHHHT--SEE
T ss_pred ccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecccccccHHHHHHHHHHHHHHcCCceEE
Confidence 68999999999 9999999987 778766655544332121111111111111123334488999999999999995599
Q ss_pred EEEEEEEecCCCcEEEEEeCCCCCCch
Q 001014 368 SNVQFAVNPVDGEVMVIEMNPRVSRSS 394 (1190)
Q Consensus 368 ~~vef~~~~~~g~~~viEiNpR~~gs~ 394 (1190)
+|+||++++ +|++++||||||++|++
T Consensus 158 ~~id~~~~~-~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 158 FHIDFIVDP-DGELYFIEINPRFGGGS 183 (184)
T ss_dssp EEEEEEEET-CCEEEEEEEESS--STT
T ss_pred EEEEEEEeC-CCCEEEEEECccCCCCC
Confidence 999999998 58899999999999964
No 118
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.91 E-value=2e-22 Score=229.65 Aligned_cols=268 Identities=15% Similarity=0.260 Sum_probs=198.2
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC-CcCccccCCcceeecC-C----cHHHHHHHhhhc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE-TVSTDYDTSDRLYFEP-L----TVEDVLNVIDLE 717 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~-~~s~~~~~ad~~~~~p-~----~~e~v~~i~~~~ 717 (1190)
-+|..+|| |+++++++.|++.|++++++...+. ..-..+.++|++++.. . +.+.+.++.+.
T Consensus 19 ~~i~~~~s------------hsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~- 85 (358)
T PRK13278 19 ITIATIGS------------HSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREM- 85 (358)
T ss_pred ceEEEEec------------ccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhc-
Confidence 48999986 4599999999999999998877643 2223455667766533 1 12222233322
Q ss_pred CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHH
Q 001014 718 RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEAD 797 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e 797 (1190)
+++++.+|.....-.++.+. ..+ ++++| +.+++...+||.+++++|+++|||+|++ +.+.+
T Consensus 86 --~~iiIp~gs~v~y~~~d~l~----------~~~---~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~~~~- 146 (358)
T PRK13278 86 --NAILIPHGSFVAYLGLENVE----------KFK---VPMFG-NREILRWEADRDKERKLLEEAGIRIPRK--YESPE- 146 (358)
T ss_pred --CcEEEeCCCcceeecHHHHH----------HCC---CCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE--eCCHH-
Confidence 66555567665544455555 677 77776 8999999999999999999999999996 45544
Q ss_pred HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh---hCCCCcEEEEEecCCcceEEEeEEecC-CCcEEE
Q 001014 798 ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE---VDPERPVLIDKYLSDAIEIDVDALADS-CGNVVI 873 (1190)
Q Consensus 798 ~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~---~~~~~~vliEefI~~g~E~~v~v~~d~-~G~v~~ 873 (1190)
+++||+||||..+.||+|+++++|.+|+.++++.+.. ......++||||| .|.|++++++... +|++.+
T Consensus 147 ------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI-~G~e~sv~~f~s~~~~~~e~ 219 (358)
T PRK13278 147 ------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYV-VGVPYYFHYFYSPIKNRLEL 219 (358)
T ss_pred ------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecC-CCcEEEEEEEEeccCCeEEE
Confidence 3579999999999999999999999999999888643 1124689999999 8999999999853 578888
Q ss_pred Eeeeeeeecc--cc---cccc-----------cccccCCCCCCHHHHHHHHHHHHHHHHH----c--CCCcceeEEEEEe
Q 001014 874 GGIMEHIEQA--GV---HSGD-----------SACMIPTKTISSSCLDTISSWTIKLAKR----L--NVCGLMNCQYAIT 931 (1190)
Q Consensus 874 ~~i~e~~~~~--g~---~~gd-----------~~~~~p~~~l~~~~~~~i~~~a~~i~~~----L--g~~G~~~ief~~d 931 (1190)
.++-+..+.. +. ...+ ....+|. .+.+...+++.+.+.+++++ + +..|++++|++++
T Consensus 220 l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~-~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~ 298 (358)
T PRK13278 220 LGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPV-VLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVT 298 (358)
T ss_pred EeeceeeeecccceeeccchhhhhcccCCceeEecceec-cchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEc
Confidence 8886655441 00 0000 0111233 67788889999999998888 4 6679999999998
Q ss_pred cCCCEEEEEEccCC-CCChhh
Q 001014 932 TSGDVYLLEANPRA-SRTVPF 951 (1190)
Q Consensus 932 ~~g~~~viEiNpR~-~~s~~~ 951 (1190)
+++++||+|+|||+ +|+-.+
T Consensus 299 ~d~~~~V~Eis~R~~ggtn~~ 319 (358)
T PRK13278 299 DNLEIVVFEISARIVAGTNLY 319 (358)
T ss_pred CCCCEEEEEEeCcccCCccce
Confidence 89999999999999 555433
No 119
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.91 E-value=3.3e-22 Score=225.93 Aligned_cols=262 Identities=21% Similarity=0.317 Sum_probs=191.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhh
Q 001014 112 DYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESG 191 (1190)
Q Consensus 112 d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~ 191 (1190)
+++...++++|+++|+++.+++.+..... ..+ .+ .....+|+|++... ...... .+ ..
T Consensus 10 ~~~~~~l~~a~~~~g~~~~~~~~~~~~~~----~~~----~~---------~~~~~~d~v~~r~~-~~~~~~--~~--~~ 67 (277)
T TIGR00768 10 RLDEKMLKEAAEELGIDYKVVTPPAIPLT----FNE----GP---------RELAELDVVIVRIV-SMFRGL--AV--AR 67 (277)
T ss_pred CHHHHHHHHHHHHcCCceEEEEhHHcEEe----ccC----CC---------ccCCCCCEEEEech-hHhhHH--HH--HH
Confidence 46788999999999999999975432111 000 00 01235899887662 111111 11 34
Q ss_pred HHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCH
Q 001014 192 ALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNK 271 (1190)
Q Consensus 192 ~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~ 271 (1190)
.++..|+++++ +++++..+.||..++++|+++|+|+|++..+.+.+++.++.++++ ||+|+||..|++|.|+.++++.
T Consensus 68 ~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~-~p~vvKP~~g~~g~gv~~i~~~ 145 (277)
T TIGR00768 68 YLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIG-FPVVLKPVFGSWGRLVSLARDK 145 (277)
T ss_pred HHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcC-CCEEEEECcCCCCCceEEEcCH
Confidence 67888999885 689999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCC----CcccccEEEEecCCCCCHHH
Q 001014 272 EEFEAICKAGLAAS-LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPM----GVHTGDSITVAPAQTLTDKE 346 (1190)
Q Consensus 272 ~el~~~~~~~~~~~-~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~----g~~~g~~~~~~Pa~~l~~~~ 346 (1190)
+++.+++....... ....+++|+||+|...+++.++.. +|.++.. +.+..+. ..+.|.. ..|.. +++
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~-~~~~~~~--~~r~~~~~~~~n~~~g~~--~~~~~-l~~-- 217 (277)
T TIGR00768 146 QAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVV-GDEVIAA--IYRITSGHWRTNLARGGK--AEPCP-LTE-- 217 (277)
T ss_pred HHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEE-CCEEEEE--EEEcCCCchhhhhhcCCe--eeecC-CCH--
Confidence 99998876654331 124799999999732256666554 3444322 2222111 1122222 23443 543
Q ss_pred HHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 001014 347 YQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 347 ~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~ 412 (1190)
++.+.+.++++++|+ |+++|||++++ +|++||+|||||++.. ..+..+|+|+++.+++.
T Consensus 218 --~~~~~a~~~~~~l~~--~~~~vD~~~~~-~g~~~viEiN~~p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 218 --EIEELAIKAAKALGL--DVVGIDLLESE-DRGLLVNEVNPNPEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred --HHHHHHHHHHHHhCC--CeEEEEEEEcC-CCCeEEEEEcCCcchh--hhHHHHCCCHHHHHHhh
Confidence 578899999999998 79999999997 7899999999998754 34788999999998764
No 120
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.90 E-value=2.2e-22 Score=214.00 Aligned_cols=294 Identities=18% Similarity=0.303 Sum_probs=212.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCC-CCCcCccccCCcc-ee---------ecCCcHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSN-PETVSTDYDTSDR-LY---------FEPLTVEDV 710 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~-p~~~s~~~~~ad~-~~---------~~p~~~e~v 710 (1190)
+.-|||++|-. .++++.++.++||+|..++.. |.....+ ++. +| |++++.+.+
T Consensus 10 k~~kiLviGvn-------------tR~vveSA~klGf~V~sv~~y~~~Dl~~~---a~~~l~~r~~~~~~rfe~~de~~l 73 (389)
T COG2232 10 KSCKILVIGVN-------------TRPVVESASKLGFEVYSVQYYDPADLPGD---AISYLRERPGELLGRFENLDEQKL 73 (389)
T ss_pred ccceEEEEeec-------------chHhHHHHHhcCeEEEEeEeecccccccc---cceEEEecChhhcCcccCCCHHHH
Confidence 35689999842 567899999999999988754 2222211 111 11 156778888
Q ss_pred HHHhhhc--CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHH-HHhhccCHHHHHHHHHHcCCCCC
Q 001014 711 LNVIDLE--RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPD-SIDAAEDRERFNAIIKELSIEQP 787 (1190)
Q Consensus 711 ~~i~~~~--~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~-~i~~~~DK~~~~~~l~~~gIp~p 787 (1190)
++.+... ++|+.++.+++...+.... +.+ ..+.|.+++ .+..+.+|.++.+.++.+|+|.|
T Consensus 74 i~~~~~~~~dvD~~ii~~sg~e~l~~~g-------------~~~---~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p 137 (389)
T COG2232 74 IEAAEDLAEDVDAPIIPFSGFEALRTSG-------------ELG---CEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEP 137 (389)
T ss_pred HHHHHhhhhhcceeeeeccccccccccC-------------ccc---cccccCCcHHHHHHHHHHHhhhhhhhhcCCCCC
Confidence 8888764 5778555555554432222 233 667888888 89999999999999999999999
Q ss_pred CceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 788 KGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 788 ~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+..... ....--+|+|+||++|+||. +.++.-.++ ....++++|+|| .|+.++|.++.++
T Consensus 138 ~~~~~e-------~~~~gekt~IlKPv~GaGG~-~el~~~~Ee-----------~~~~~~i~Qefi-~G~p~Svs~is~g 197 (389)
T COG2232 138 SEKKIE-------PLEEGEKTLILKPVSGAGGL-VELVKFDEE-----------DPPPGFIFQEFI-EGRPVSVSFISNG 197 (389)
T ss_pred hhhhhh-------hhhhcceeeEEeeccCCCce-eeecccccc-----------cCCcceehhhhc-CCceeEEEEEecC
Confidence 875442 11222378999999999996 333332222 113679999999 9999999999997
Q ss_pred CCcEEEEeeeeeeec--cccccccccc--ccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 868 CGNVVIGGIMEHIEQ--AGVHSGDSAC--MIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~--~g~~~gd~~~--~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
. +.....+.+++-. .+..++-..+ ..|. ...+ .+++++++..++..||+.|..+|||++ ++.++|||||||
T Consensus 198 ~-~a~~la~N~QiI~~~~~~~~~f~Y~GNlTP~--~~~~-~ee~e~la~elV~~lgL~GsnGVDfvl-~d~gpyViEVNP 272 (389)
T COG2232 198 S-DALTLAVNDQIIDGLRGEYSQFVYKGNLTPF--PYEE-VEEAERLAEELVEELGLVGSNGVDFVL-NDKGPYVIEVNP 272 (389)
T ss_pred c-ceEEEEEeeeeecccccccccceeccCcCCC--cchh-hHHHHHHHHHHHHHhccccccccceEe-ecCCcEEEEecC
Confidence 6 5666666655533 2222211111 1233 2332 288999999999999999999999999 888999999999
Q ss_pred CCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcc
Q 001014 944 RASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEK 998 (1190)
Q Consensus 944 R~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~ 998 (1190)
|+.|+..-++.++|+|++++|+++..|+-. ..+.+.+|++|..+|.-++
T Consensus 273 R~qGt~e~iE~s~giNl~~lHi~af~G~Lp------Er~kpr~~a~krILyap~~ 321 (389)
T COG2232 273 RIQGTLECIERSSGINLFRLHIQAFDGELP------ERPKPRGYACKRILYAPRT 321 (389)
T ss_pred cccchHHHHHHhcCCCHHHHHHHHhcCcCc------CCCCcceeEEeEEEeccce
Confidence 999999989999999999999999999643 3567889999988875443
No 121
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.90 E-value=3.9e-22 Score=212.06 Aligned_cols=341 Identities=19% Similarity=0.255 Sum_probs=233.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE----------ECCCCHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY----------ITPMTPELVEQ 161 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~----------i~p~~~~~v~~ 161 (1190)
+-|||++|-. .++++.++.++||+|..++-...... ...++..+ ++++|.+.+++
T Consensus 11 ~~kiLviGvn-------------tR~vveSA~klGf~V~sv~~y~~~Dl--~~~a~~~l~~r~~~~~~rfe~~de~~li~ 75 (389)
T COG2232 11 SCKILVIGVN-------------TRPVVESASKLGFEVYSVQYYDPADL--PGDAISYLRERPGELLGRFENLDEQKLIE 75 (389)
T ss_pred cceEEEEeec-------------chHhHHHHHhcCeEEEEeEeeccccc--ccccceEEEecChhhcCcccCCCHHHHHH
Confidence 4589999977 57899999999999998864322111 11222221 14667888888
Q ss_pred HHHH--cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHH-HHHHHhcHHHHHHHHHHcCCCCCCeeecCCHH
Q 001014 162 VLEK--ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLD-AIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLD 238 (1190)
Q Consensus 162 i~~~--~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~-~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~ 238 (1190)
.+.. +.+|+.+..+.|...++.. -..+.++.|++++ ....+.+|..+.+.+..+|+|.|+.....-
T Consensus 76 ~~~~~~~dvD~~ii~~sg~e~l~~~---------g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e~-- 144 (389)
T COG2232 76 AAEDLAEDVDAPIIPFSGFEALRTS---------GELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIEP-- 144 (389)
T ss_pred HHHhhhhhcceeeeecccccccccc---------CccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhhh--
Confidence 7775 4678844444443333311 1245778899888 899999999999999999999998754421
Q ss_pred HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE
Q 001014 239 ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 239 e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
+ ..|.+++|+||+.|+||. +.++.-.++. +...+|+|+||+| +.+|+.++.++.+...+.+
T Consensus 145 -~-----~~gekt~IlKPv~GaGG~-~el~~~~Ee~-----------~~~~~i~Qefi~G-~p~Svs~is~g~~a~~la~ 205 (389)
T COG2232 145 -L-----EEGEKTLILKPVSGAGGL-VELVKFDEED-----------PPPGFIFQEFIEG-RPVSVSFISNGSDALTLAV 205 (389)
T ss_pred -h-----hhcceeeEEeeccCCCce-eeeccccccc-----------CCcceehhhhcCC-ceeEEEEEecCcceEEEEE
Confidence 1 122278999999999986 3333322221 1258999999999 9999999998887777778
Q ss_pred eeeeeCC-CCccccc--EEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchH
Q 001014 319 SIENVDP-MGVHTGD--SITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA 395 (1190)
Q Consensus 319 ~~e~~~~-~g~~~g~--~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~ 395 (1190)
+.|.++. .+...+. ....+|.+... .+++++.|..++..||+. |..+|||.++ +.++|+||||||++|+..
T Consensus 206 N~QiI~~~~~~~~~f~Y~GNlTP~~~~~---~ee~e~la~elV~~lgL~-GsnGVDfvl~--d~gpyViEVNPR~qGt~e 279 (389)
T COG2232 206 NDQIIDGLRGEYSQFVYKGNLTPFPYEE---VEEAERLAEELVEELGLV-GSNGVDFVLN--DKGPYVIEVNPRIQGTLE 279 (389)
T ss_pred eeeeecccccccccceeccCcCCCcchh---hHHHHHHHHHHHHHhccc-cccccceEee--cCCcEEEEecCcccchHH
Confidence 8888772 2222211 12245654332 377899999999999996 9999999999 678999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCC--ccccCCcCeEEee-eceeeecccCCCCcccCCCCCcEEEEEEE
Q 001014 396 LASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTP--ASFEPSIDYVVTK-IPRFAFEKFPGSEPLLTTQMKSVGEAMAL 472 (1190)
Q Consensus 396 l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~--~~f~p~~~~v~~k-~p~~~~~~~~~~~~~l~~~~~s~G~v~a~ 472 (1190)
.++.++|+|++++|+.+..|. |++-+.+ .+... ..|.|. .+.+. +-.-.++..|.- .........+..|+|-
T Consensus 280 ~iE~s~giNl~~lHi~af~G~-LpEr~kp-r~~a~krILyap~--~v~v~~l~~~~~~DiP~~-GtviekgePl~sviA~ 354 (389)
T COG2232 280 CIERSSGINLFRLHIQAFDGE-LPERPKP-RGYACKRILYAPR--TVRVPILKLSWTHDIPRP-GTVIEKGEPLCSVIAS 354 (389)
T ss_pred HHHHhcCCCHHHHHHHHhcCc-CcCCCCc-ceeEEeEEEeccc--eeecccccccccccCCCC-CcccCCCCceeeeeec
Confidence 999999999999999988775 4443332 12222 123333 22221 111111222222 1222344458999999
Q ss_pred eCCHHHHHHHHHHhhh
Q 001014 473 GRTFQESFQKALRSLE 488 (1190)
Q Consensus 473 G~~~~ea~~ka~~~l~ 488 (1190)
+.+.++|..-|.+..+
T Consensus 355 ~nt~~~a~~~~er~~e 370 (389)
T COG2232 355 SNTRSGAESMAERLAE 370 (389)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999987777754
No 122
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.90 E-value=2.9e-22 Score=228.30 Aligned_cols=278 Identities=17% Similarity=0.223 Sum_probs=200.9
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIV 724 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~ 724 (1190)
|++||+.... .|++..++++++++|+++..++......... +..+.+++.. ....++|+|++
T Consensus 2 ~~~i~~~~~s--------~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~-~~~~~~~~~~---------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPLSCYMNIN-PAASSIHYKG---------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCc--------chhHHHHHHHHHHcCCeEEEEehHHceEecC-CCcccEEECC---------cccCCCCEEEE
Confidence 4677763321 2778899999999999999998543211110 0011222110 12247899998
Q ss_pred ccCCc---hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHH
Q 001014 725 QFGGQ---TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAI 801 (1190)
Q Consensus 725 ~~g~~---~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~ 801 (1190)
..++. .....+..++ ..| + +++.++.++.++.||..++++|+++|||+|++..+.+.+++.++
T Consensus 64 ~~~~~~~~~~~~~~~~le----------~~g---~-~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~ 129 (300)
T PRK10446 64 RIGTAITFYGTAALRQFE----------MLG---S-YPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDL 129 (300)
T ss_pred cCCCchhhHHHHHHHHHH----------HCC---C-ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHH
Confidence 76653 2233455666 777 5 45679999999999999999999999999999998888888888
Q ss_pred HHHh-CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC--CcceEEEeEEecCCCcEEEEeeee
Q 001014 802 AKEI-GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS--DAIEIDVDALADSCGNVVIGGIME 878 (1190)
Q Consensus 802 ~~~i-gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~--~g~E~~v~v~~d~~G~v~~~~i~e 878 (1190)
++++ +||+||||..+++|+|+.++++.++++.+++..... +.+++||+||+ .|.|+.|.++.+ +++ +.++
T Consensus 130 ~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~--~~~~lvQe~I~~~~g~d~rv~vig~---~~~--~~~~ 202 (300)
T PRK10446 130 IDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL--NAHILVQEYIKEAQGCDIRCLVVGD---EVV--AAIE 202 (300)
T ss_pred HHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc--CCCEEEEeeeccCCCceEEEEEECC---EEE--EEEE
Confidence 8877 799999999999999999999999998888765433 35799999996 588999988742 432 2333
Q ss_pred eeecc-----cccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhh
Q 001014 879 HIEQA-----GVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVS 953 (1190)
Q Consensus 879 ~~~~~-----g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~ 953 (1190)
..... ..+.|.... + ..++ +++++++.+++++||+. +.+|||+++.+| +||+|||++++.+ .+.
T Consensus 203 r~~~~~~~~~n~~~g~~~~--~-~~l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~~--~~~ 271 (300)
T PRK10446 203 RRAKEGDFRSNLHRGGAAS--V-ASIT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGLE--GIE 271 (300)
T ss_pred EecCCCchhheeccCCeec--c-CCCC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCChh--hhH
Confidence 32211 122222111 2 1343 55789999999999996 999999996555 9999999998654 357
Q ss_pred cccCCCHHHHHHHHHcCCC
Q 001014 954 KAIGHPLAKYAALVMSGKS 972 (1190)
Q Consensus 954 ~~~G~~l~~~~~~~~lG~~ 972 (1190)
.++|+|+.+..++.+...-
T Consensus 272 ~~~g~~~~~~~~~~i~~~~ 290 (300)
T PRK10446 272 KTTGIDIAGKMIRWIERHA 290 (300)
T ss_pred HHHCcCHHHHHHHHHHHhc
Confidence 8899999999998876543
No 123
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.90 E-value=1.7e-22 Score=228.26 Aligned_cols=261 Identities=20% Similarity=0.292 Sum_probs=188.4
Q ss_pred chhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccC-CchhhhhhhhHHhh
Q 001014 663 DYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFG-GQTPLKLSLPIHQY 741 (1190)
Q Consensus 663 d~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g-~~~~~~la~~l~~~ 741 (1190)
++++..++++++++|+++.+++.+..... ..+. + .....+|.|+.-.. ......++..++
T Consensus 10 ~~~~~~l~~a~~~~g~~~~~~~~~~~~~~----~~~~----~---------~~~~~~d~v~~r~~~~~~~~~~~~~l~-- 70 (277)
T TIGR00768 10 RLDEKMLKEAAEELGIDYKVVTPPAIPLT----FNEG----P---------RELAELDVVIVRIVSMFRGLAVARYLE-- 70 (277)
T ss_pred CHHHHHHHHHHHHcCCceEEEEhHHcEEe----ccCC----C---------ccCCCCCEEEEechhHhhHHHHHHHHH--
Confidence 45788899999999999998875322111 1110 0 01234677665442 123335666666
Q ss_pred hccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcc
Q 001014 742 LDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRA 821 (1190)
Q Consensus 742 l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~G 821 (1190)
..| +++++ +++++..+.||..++++|+++|||+|++..+.+.+++.++.++++||+|+||..+++|+|
T Consensus 71 --------~~g---~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~g 138 (277)
T TIGR00768 71 --------SLG---VPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPVVLKPVFGSWGRL 138 (277)
T ss_pred --------HCC---CeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcCCCEEEEECcCCCCCc
Confidence 788 88876 589999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCHHHHHHHHHHhHhhC-CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecc----cccccccccccCC
Q 001014 822 MEIVYTDETLVTYLENAVEVD-PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQA----GVHSGDSACMIPT 896 (1190)
Q Consensus 822 v~iv~~~~el~~~~~~~~~~~-~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~----g~~~gd~~~~~p~ 896 (1190)
+.++++.+++..++....... ...++++|+||++....++.++..+ |+++. .+.+.... ..+.|... .|.
T Consensus 139 v~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~-~~~~~--~~~r~~~~~~~~n~~~g~~~--~~~ 213 (277)
T TIGR00768 139 VSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVG-DEVIA--AIYRITSGHWRTNLARGGKA--EPC 213 (277)
T ss_pred eEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEEC-CEEEE--EEEEcCCCchhhhhhcCCee--eec
Confidence 999999999998877543321 1257999999953222455555442 34432 22222111 11222111 121
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHH
Q 001014 897 KTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 897 ~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~ 967 (1190)
.++ +++.+.+.+++++||+ |.+++||++|++|++||+|+|||++.. .++..+|+|+++.+++.
T Consensus 214 -~l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 214 -PLT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred -CCC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcchh--hhHHHHCCCHHHHHHhh
Confidence 233 4688899999999998 899999999888899999999999754 35788999999998764
No 124
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.90 E-value=1.5e-21 Score=222.49 Aligned_cols=266 Identities=19% Similarity=0.280 Sum_probs=190.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC-CCCCCccCcceEEECC-C----CHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA-TIMTDPGLADRTYITP-M----TPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~i~p-~----~~~~v~~i~~~ 165 (1190)
..+|..+|+- |+.++++.|+++|++++++...+. ..-....++|+.++.. . +.+.+.++. +
T Consensus 18 ~~~i~~~~sh------------saL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~-~ 84 (358)
T PRK13278 18 NITIATIGSH------------SSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLR-E 84 (358)
T ss_pred cceEEEEecc------------cHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHh-h
Confidence 3489999984 578999999999999999977653 2223345667765332 2 223333333 3
Q ss_pred cCCCE-EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH
Q 001014 166 ERPDA-LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIA 244 (1190)
Q Consensus 166 ~~~d~-Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~ 244 (1190)
. ++ ++|. +...+.-.+ ..+ .++++++.| +.++++...||..++++|+++|||+|++ +.+.+
T Consensus 85 ~--~~iiIp~-gs~v~y~~~-----d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~~~~------ 146 (358)
T PRK13278 85 M--NAILIPH-GSFVAYLGL-----ENV-EKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK--YESPE------ 146 (358)
T ss_pred c--CcEEEeC-CCcceeecH-----HHH-HHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE--eCCHH------
Confidence 3 44 4443 433322221 223 368888776 8889999999999999999999999996 44544
Q ss_pred HHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc---CCCCcEEEeeecCCCeeeeEEEEEeC-CCcEEEEEee
Q 001014 245 NEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA---SLTSQVLVEKSLLGWKEYELEVMRDL-ADNVVIICSI 320 (1190)
Q Consensus 245 ~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~---~~~~~vlVEe~I~G~~E~sv~v~~d~-~g~~~~~~~~ 320 (1190)
+++ ||+||||..+.||+|+++|+|.+|+.++++.+.+. +....++|||||.| .||+++++... +|++.++..-
T Consensus 147 -~i~-~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id 223 (358)
T PRK13278 147 -DID-RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGID 223 (358)
T ss_pred -HcC-CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeec
Confidence 357 99999999999999999999999999999887541 12568999999999 89999999853 4665555443
Q ss_pred eeeCC---------CC------ccc-ccEEEEecCCCCCHHHHHHHHHHHHHHHHH----h-CCccceEEEEEEEecCCC
Q 001014 321 ENVDP---------MG------VHT-GDSITVAPAQTLTDKEYQRLRDYSIAIIRE----I-GVECGGSNVQFAVNPVDG 379 (1190)
Q Consensus 321 e~~~~---------~g------~~~-g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~----l-g~~~G~~~vef~~~~~~g 379 (1190)
+++.. .+ .+. --.....|+. +.+....++.+.+.+++++ + +..+|++|+|+++++ ++
T Consensus 224 ~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~ 301 (358)
T PRK13278 224 RRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTD-NL 301 (358)
T ss_pred eeeeecccceeeccchhhhhcccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcC-CC
Confidence 33221 00 011 0111235664 7888888888888888888 4 333699999999997 88
Q ss_pred cEEEEEeCCCCCCc
Q 001014 380 EVMVIEMNPRVSRS 393 (1190)
Q Consensus 380 ~~~viEiNpR~~gs 393 (1190)
.+|++|+|||+.|+
T Consensus 302 ~~~V~Eis~R~~gg 315 (358)
T PRK13278 302 EIVVFEISARIVAG 315 (358)
T ss_pred CEEEEEEeCcccCC
Confidence 99999999999553
No 125
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.89 E-value=2.4e-21 Score=218.25 Aligned_cols=302 Identities=15% Similarity=0.203 Sum_probs=232.8
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-C-eEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-Y-ETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-~-~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
-+|||||+|.. .+.+ ++.|++.- + +|++.-.|-.+.+.+..-.+..-+.+.+.+.+.++|+++++..
T Consensus 3 ~~vLviGsGgR--EHal---------~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~l 71 (788)
T KOG0237|consen 3 VNVLVIGSGGR--EHAL---------AWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINL 71 (788)
T ss_pred eEEEEEcCCch--HhHH---------HHHhhcCCccceEEEccCCCCcccCccccCcccccChhhHHHHHHHHHHcceeE
Confidence 47999999993 3433 55665532 2 3444433433333221122233334567899999999999999
Q ss_pred cccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHH
Q 001014 722 IIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAI 801 (1190)
Q Consensus 722 Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~ 801 (1190)
|++..+......++..|. +.| ++++||+.++.++..+|.+.|.+|.++|||+..|..+++.+++..+
T Consensus 72 VvvGPE~PL~~Gl~~~l~----------~~g---i~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sf 138 (788)
T KOG0237|consen 72 VVVGPELPLVAGLADVLR----------SAG---IPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSF 138 (788)
T ss_pred EEECCchhhhhhhhhhhh----------ccC---cceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHH
Confidence 998777767778999998 999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhC-CcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEecCCCcEEEEee
Q 001014 802 AKEIG-YPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI 876 (1190)
Q Consensus 802 ~~~ig-yPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i 876 (1190)
.+... .++|||...-..|+||.+..+.+|.-+++++.+.. .....++|||++ +|.|+++-++.|+....-+++.
T Consensus 139 i~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~L-EGeEvS~laftDG~s~~~mp~a 217 (788)
T KOG0237|consen 139 IQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELL-EGEEVSFLAFTDGYSVRPLPPA 217 (788)
T ss_pred HHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhc-CcceEEEEEEecCcccccCCcc
Confidence 99988 56899999999999999999999999998875321 234689999999 9999999999998744444555
Q ss_pred eeeee----cccccccccccccCCCCCCHHHHHHHHHH-HHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 877 MEHIE----QAGVHSGDSACMIPTKTISSSCLDTISSW-TIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 877 ~e~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~~~-a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
++|.. ..|...|...+-.|++..+++.++.+.+. .++.++.| .|.|++.--+|+ ..+.+.|+|.|.||+
T Consensus 218 QDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl-~k~~P~vLEfN~RFG 296 (788)
T KOG0237|consen 218 QDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLML-TKDGPKVLEFNVRFG 296 (788)
T ss_pred cchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEE-ecCCccEEEEecccC
Confidence 66652 23556666666678888998888776643 44455444 577999999999 566699999999999
Q ss_pred CC-hhhhhcccCCCHHHHHHHHHcCC
Q 001014 947 RT-VPFVSKAIGHPLAKYAALVMSGK 971 (1190)
Q Consensus 947 ~s-~~~~~~~~G~~l~~~~~~~~lG~ 971 (1190)
.- ...+.....-||++++..++-|+
T Consensus 297 DPEtQv~l~lLesDL~evi~a~~~~~ 322 (788)
T KOG0237|consen 297 DPETQVLLPLLESDLAEVILACCNGR 322 (788)
T ss_pred CchhhhhHHHHHhHHHHHHHHHhhCC
Confidence 93 44445556679999999877664
No 126
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.89 E-value=2.9e-21 Score=218.56 Aligned_cols=260 Identities=17% Similarity=0.236 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEecCCC-hhHHHHHHHHHHhh
Q 001014 113 YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPTMGG-QTALNLAVALAESG 191 (1190)
Q Consensus 113 ~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g-~~~~~~~~~l~~~~ 191 (1190)
+....++++|+++|+++..++......... + + . ....++|++++-... .... .-..
T Consensus 10 ~~~~~l~~al~~~g~~~~~~~~~~~~~~~~----~-----~-~-------~~~~~~d~v~~r~~~~~~~~------~~~~ 66 (280)
T TIGR02144 10 PDEKMLIEELEKLGLPYRKIYVPALPLPFG----E-----R-P-------KELEDVDVAIIRCVSQSRAL------YSAR 66 (280)
T ss_pred HHHHHHHHHHHHcCCceEEEEhhheEEEcC----C-----C-c-------cccCCCCEEEEcCcchhhHH------HHHH
Confidence 346789999999999999987553321111 0 0 0 111368988875321 1111 1134
Q ss_pred HHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCH
Q 001014 192 ALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNK 271 (1190)
Q Consensus 192 ~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~ 271 (1190)
.++..|+++++ ++++++.+.||..++++|+++|||+|++..+.+.+++.++...++ ||+|+||..|++|+|+.++++.
T Consensus 67 ~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~-~P~vvKP~~g~~g~gv~~v~~~ 144 (280)
T TIGR02144 67 LLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALG-YPVVLKPVIGSWGRLVALIRDK 144 (280)
T ss_pred HHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcC-CCEEEEECcCCCcCCEEEECCH
Confidence 67889999986 689999999999999999999999999999999999988888999 9999999999999999999999
Q ss_pred HHHHHHHHHHH--hcCCCCcEEEeeecCCC-eeeeEEEEEeCCCcEEEEEeeeeeC-CC--CcccccEEEEecCCCCCHH
Q 001014 272 EEFEAICKAGL--AASLTSQVLVEKSLLGW-KEYELEVMRDLADNVVIICSIENVD-PM--GVHTGDSITVAPAQTLTDK 345 (1190)
Q Consensus 272 ~el~~~~~~~~--~~~~~~~vlVEe~I~G~-~E~sv~v~~d~~g~~~~~~~~e~~~-~~--g~~~g~~~~~~Pa~~l~~~ 345 (1190)
+++.++++... ..+....+++|+||+|. .++++.++. |.... + +.+.. .. ..+.|. ...|.. +++
T Consensus 145 ~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig---~~~~~-~-~~r~~~~~~~~~~~g~--~~~~~~-~~~- 215 (280)
T TIGR02144 145 DELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIG---DEAIA-A-IYRYSNHWRTNTARGG--KAEPCP-LDE- 215 (280)
T ss_pred HHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEEC---CEEEE-E-EEEcCCchhhhhhcCC--ceeccC-CCH-
Confidence 99988775322 22224579999999861 555555542 33322 2 22221 01 111122 234443 554
Q ss_pred HHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHc
Q 001014 346 EYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSV 414 (1190)
Q Consensus 346 ~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~al 414 (1190)
++++.+.++++++|+ |+++|||++++ +|+++|+|||||++... ...++|+|+.+..++.++
T Consensus 216 ---~~~~~a~~~~~~lg~--~~~~vD~~~~~-~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 216 ---EVEELAVKAAEAVGG--GVVAIDIFESK-ERGLLVNEVNHVPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred ---HHHHHHHHHHHHhCC--CeEEEEEEEcC-CCCEEEEEEeCCcchhh--hhHhhCCCHHHHHHHHHH
Confidence 467889999999997 79999999986 67899999999987643 356799999999998764
No 127
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.89 E-value=4.1e-22 Score=204.35 Aligned_cols=170 Identities=24% Similarity=0.351 Sum_probs=144.8
Q ss_pred HHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEe-cCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCC
Q 001014 221 MKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIR-PAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGW 299 (1190)
Q Consensus 221 l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVK-P~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~ 299 (1190)
|+++|+|+|+|..+.+.+++.++.+++| ||+|+| +..|+.|+|..++++.+|+..+++.+ ...++|+|+||+..
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG-~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~----~~~~~ilE~~v~f~ 75 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIG-FPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL----GGGPCILEEFVPFD 75 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHT-SSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT----TTSCEEEEE---ES
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcC-CCEEEEccCcCcCCCccEEECCHHHHHHHHHhc----CCCcEEEEeccCCc
Confidence 6889999999999999999999999999 999999 57888999999999999999999885 45689999999999
Q ss_pred eeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCC
Q 001014 300 KEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDG 379 (1190)
Q Consensus 300 ~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g 379 (1190)
+|+++.+.++.+|++.+++..++.+..++- ....+|++ ++++..+++++++.+++++|++. |++.|||++++ +|
T Consensus 76 ~EiSvivaR~~~G~~~~yp~~en~~~~~il---~~s~~Pa~-i~~~~~~~a~~ia~~i~~~l~~v-Gv~~VE~Fv~~-~g 149 (172)
T PF02222_consen 76 REISVIVARDQDGEIRFYPPVENVHRDGIL---HESIAPAR-ISDEVEEEAKEIARKIAEALDYV-GVLAVEFFVTK-DG 149 (172)
T ss_dssp EEEEEEEEEETTSEEEEEEEEEEEEETTEE---EEEEESCS-S-HHHHHHHHHHHHHHHHHHTSS-EEEEEEEEEET-TS
T ss_pred EEEEEEEEEcCCCCEEEEcCceEEEECCEE---EEEECCCC-CCHHHHHHHHHHHHHHHHHcCcE-EEEEEEEEEec-CC
Confidence 999999999999999999999988644432 23468998 99999999999999999999995 99999999997 77
Q ss_pred c-EEEEEeCCCCCCchHHHHHHh
Q 001014 380 E-VMVIEMNPRVSRSSALASKAT 401 (1190)
Q Consensus 380 ~-~~viEiNpR~~gs~~l~~~at 401 (1190)
+ +||.|+.||++.|.+++..+|
T Consensus 150 ~~v~vNEiaPRpHnSGh~Ti~~c 172 (172)
T PF02222_consen 150 DEVLVNEIAPRPHNSGHWTIEAC 172 (172)
T ss_dssp TEEEEEEEESS--GGGGGHHHHB
T ss_pred CEEEEEeccCCccCcccEeeecC
Confidence 6 999999999999998876653
No 128
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.89 E-value=1.2e-21 Score=218.52 Aligned_cols=288 Identities=17% Similarity=0.200 Sum_probs=211.3
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCC-CCCcCccc-cCCcceeecCCc----HHHHHHHhhhc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSN-PETVSTDY-DTSDRLYFEPLT----VEDVLNVIDLE 717 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~-p~~~s~~~-~~ad~~~~~p~~----~e~v~~i~~~~ 717 (1190)
-+|..+|| ||+.++.+-+++.|++++++... .+..-..| .++|+++..... -+++.+-..+.
T Consensus 18 ~~i~t~~S------------Hsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~l~~~ 85 (366)
T PRK13277 18 VKIGVLAS------------HSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDELREE 85 (366)
T ss_pred cEEEEEec------------chHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHHHHHC
Confidence 48999985 67999999999999999988654 34444455 567777653311 22333333332
Q ss_pred CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhc--cCHHHHHHHHHHcCCCCCCceeecCH
Q 001014 718 RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAA--EDRERFNAIIKELSIEQPKGGIAKSE 795 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~--~DK~~~~~~l~~~gIp~p~~~~~~s~ 795 (1190)
++|++-+|.....-=.+.++ .+.. +|++| +...++.. +||..+.++|+++||++|++.. +
T Consensus 86 --n~i~iPh~sf~~y~g~~~ie---------~~~~---vp~fG-nr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~--~- 147 (366)
T PRK13277 86 --NAIFVPNRSFAVYVGYDAIE---------NEFK---VPIFG-NRYLLRWEERTGEKNYYWLLEKAGIPYPKLFK--D- 147 (366)
T ss_pred --CeEEecCCCeEEEecHHHHh---------hcCC---CCccc-CHHHhhhhhccCHHHHHHHHHHcCCCCceeec--C-
Confidence 45555555443321112222 0355 89998 66777666 7788887899999999999865 2
Q ss_pred HHHHHHHHHhCCcEEEecCcCCC--CcceEEeCCHHHHHHHHHHhHhh-----CCCCcEEEEEecCCcceEEEeEEecC-
Q 001014 796 ADALAIAKEIGYPVVVRPSYVLG--GRAMEIVYTDETLVTYLENAVEV-----DPERPVLIDKYLSDAIEIDVDALADS- 867 (1190)
Q Consensus 796 ~e~~~~~~~igyPvvvKP~~~~g--g~Gv~iv~~~~el~~~~~~~~~~-----~~~~~vliEefI~~g~E~~v~v~~d~- 867 (1190)
.+++.|||||||..+.| |+|+.++.|.+|+.....+.... ......+||||| .|.|++++++.+.
T Consensus 148 ------p~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI-~G~ey~~d~F~s~l 220 (366)
T PRK13277 148 ------PEEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYV-IGAHFNFNYFYSPI 220 (366)
T ss_pred ------ccccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEecc-CCCEEEEEEEEecc
Confidence 24678999999999999 99999999999998887664321 112456899999 8999999999984
Q ss_pred CCcEEEEeeeeeeec---------cc-----------ccccccccccCCCCCCHHHHHHHHHHHHHHHHHcC------CC
Q 001014 868 CGNVVIGGIMEHIEQ---------AG-----------VHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLN------VC 921 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~---------~g-----------~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg------~~ 921 (1190)
+|++.+.++....+. +. +..|. -+..+.+...+++.+.+++++++++ +.
T Consensus 221 ~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~-----~p~t~rEslle~v~e~ger~v~a~~~~~~pg~i 295 (366)
T PRK13277 221 RDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGH-----EPATIRESLLEKVFEIGEKFVEATKELYPPGII 295 (366)
T ss_pred CCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcC-----ccccchHHHHHHHHHHHHHHHHHhhhhcCcccc
Confidence 677777776653221 00 11111 2336777899999999999999976 67
Q ss_pred cceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHH--HHcCCCCC
Q 001014 922 GLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAAL--VMSGKSLN 974 (1190)
Q Consensus 922 G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~--~~lG~~l~ 974 (1190)
|++++|+++++++++|++|||||++|+.++ ...+|.|..++.++ ..+|+.+.
T Consensus 296 Gpf~lQ~iv~~d~~~~V~EInpR~gGGtnl-~~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 296 GPFTLQTIVTPDLDFVVYDVAPRIGGGTNV-YMGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred cceEEEEEEcCCCcEEEEEEcCCcCCCccc-eeecCCCcHHHHhcCccccCCcch
Confidence 999999999878999999999999999887 77889999999988 78888775
No 129
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.89 E-value=2e-21 Score=216.77 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=208.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC-CCCCCc-cCcceEEECC-CC---HHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA-TIMTDP-GLADRTYITP-MT---PELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~-~~~~~~-~~ad~~~i~p-~~---~~~v~~i~~~ 165 (1190)
..+|+.+|+ ||+.++++-+++.|++++++..... ..-... ..+|+.++.. .. .+.+.+-+++
T Consensus 17 ~~~i~t~~S------------Hsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~l~~ 84 (366)
T PRK13277 17 KVKIGVLAS------------HSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDELRE 84 (366)
T ss_pred ccEEEEEec------------chHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHHHHH
Confidence 348999998 5789999999999999999976542 222222 4678776433 22 1233333332
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHH--HHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHH
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAI--KKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISI 243 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i--~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~ 243 (1190)
-++|+.- +|-....+.. ..+..+..+|++|+ ...+ +--+||..+.++|+++||++|++.. ++
T Consensus 85 --~n~i~iP-h~sf~~y~g~----~~ie~~~~vp~fGn-r~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~--~p------ 148 (366)
T PRK13277 85 --ENAIFVP-NRSFAVYVGY----DAIENEFKVPIFGN-RYLLRWEERTGEKNYYWLLEKAGIPYPKLFK--DP------ 148 (366)
T ss_pred --CCeEEec-CCCeEEEecH----HHHhhcCCCCcccC-HHHhhhhhccCHHHHHHHHHHcCCCCceeec--Cc------
Confidence 3445432 3333333333 22333578999985 4444 4447888887899999999999876 22
Q ss_pred HHHcCCCcEEEecCCCCC--CcceEEeCCHHHHHHHHHHHHhcC-----CCCcEEEeeecCCCeeeeEEEEEe-CCCcEE
Q 001014 244 ANEIGEFPLIIRPAFTLG--GTGGGIAYNKEEFEAICKAGLAAS-----LTSQVLVEKSLLGWKEYELEVMRD-LADNVV 315 (1190)
Q Consensus 244 ~~~ig~~PvVVKP~~g~g--g~Gv~iv~~~~el~~~~~~~~~~~-----~~~~vlVEe~I~G~~E~sv~v~~d-~~g~~~ 315 (1190)
+++. +||||||..+.| |+|+++++|.+|+.+.+.+..... ...+++|||||.| .||+++++.+ -+|++.
T Consensus 149 -~eId-~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve 225 (366)
T PRK13277 149 -EEID-RPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLE 225 (366)
T ss_pred -cccC-ccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEE
Confidence 3577 999999999999 999999999999999877654321 1246689999999 8999999988 367666
Q ss_pred EEEeeeeeCC----C-----------CcccccEEE-EecCCCCCHHHHHHHHHHHHHHHHHhC------CccceEEEEEE
Q 001014 316 IICSIENVDP----M-----------GVHTGDSIT-VAPAQTLTDKEYQRLRDYSIAIIREIG------VECGGSNVQFA 373 (1190)
Q Consensus 316 ~~~~~e~~~~----~-----------g~~~g~~~~-~~Pa~~l~~~~~~~l~~~a~~i~~~lg------~~~G~~~vef~ 373 (1190)
+++...++.. . +.+...... ..|. ++.+...+.+.+.+.+++++++ + .|++++|++
T Consensus 226 ~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~-t~rEslle~v~e~ger~v~a~~~~~~pg~-iGpf~lQ~i 303 (366)
T PRK13277 226 LLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPA-TIRESLLEKVFEIGEKFVEATKELYPPGI-IGPFTLQTI 303 (366)
T ss_pred EEEEeeccccccccccccChhhhhhcccCCceEEEcCccc-cchHHHHHHHHHHHHHHHHHhhhhcCccc-ccceEEEEE
Confidence 6554443211 0 011100111 2555 3887889999999999999977 5 599999999
Q ss_pred EecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH--HHcCCCCC
Q 001014 374 VNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAK--LSVGYSLD 419 (1190)
Q Consensus 374 ~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~--~alG~~l~ 419 (1190)
+++ ++++|++|||||++|++.+ ...+|.|..+..++ ..+|..++
T Consensus 304 v~~-d~~~~V~EInpR~gGGtnl-~~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 304 VTP-DLDFVVYDVAPRIGGGTNV-YMGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EcC-CCcEEEEEEcCCcCCCccc-eeecCCCcHHHHhcCccccCCcch
Confidence 986 7999999999999998764 55679999998888 77887654
No 130
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.88 E-value=4.7e-21 Score=216.89 Aligned_cols=262 Identities=17% Similarity=0.209 Sum_probs=189.2
Q ss_pred hhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcccccc-CCchhhhhhhhHHhhh
Q 001014 664 YCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQF-GGQTPLKLSLPIHQYL 742 (1190)
Q Consensus 664 ~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~-g~~~~~~la~~l~~~l 742 (1190)
+....++.+|+++|+++..++.....+... + + . ....++|++++-. .+.....++..++
T Consensus 10 ~~~~~l~~al~~~g~~~~~~~~~~~~~~~~----~-----~-~-------~~~~~~d~v~~r~~~~~~~~~~~~~le--- 69 (280)
T TIGR02144 10 PDEKMLIEELEKLGLPYRKIYVPALPLPFG----E-----R-P-------KELEDVDVAIIRCVSQSRALYSARLLE--- 69 (280)
T ss_pred HHHHHHHHHHHHcCCceEEEEhhheEEEcC----C-----C-c-------cccCCCCEEEEcCcchhhHHHHHHHHH---
Confidence 345667889999999999987653222111 1 0 0 1123577776542 2234445666777
Q ss_pred ccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcce
Q 001014 743 DEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAM 822 (1190)
Q Consensus 743 ~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv 822 (1190)
..| +++++ +++++..+.||..++++|+++|||+|++..+.+.+++.++.+.++||+|+||..|++|+|+
T Consensus 70 -------~~g---~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv 138 (280)
T TIGR02144 70 -------ALG---VPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGYPVVLKPVIGSWGRLV 138 (280)
T ss_pred -------HCC---CcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCE
Confidence 889 99887 6899999999999999999999999999999999999888889999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhH--hhCCCCcEEEEEecCC-cceEEEeEEecCCCcEEEEeeeeeee--cccccccccccccCCC
Q 001014 823 EIVYTDETLVTYLENAV--EVDPERPVLIDKYLSD-AIEIDVDALADSCGNVVIGGIMEHIE--QAGVHSGDSACMIPTK 897 (1190)
Q Consensus 823 ~iv~~~~el~~~~~~~~--~~~~~~~vliEefI~~-g~E~~v~v~~d~~G~v~~~~i~e~~~--~~g~~~gd~~~~~p~~ 897 (1190)
.++++.+++.++++... ......++++|+||++ +.++++.++.+ .. ...+...-. ..+.+.|.. ..|.
T Consensus 139 ~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~---~~-~~~~~r~~~~~~~~~~~g~~--~~~~- 211 (280)
T TIGR02144 139 ALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGD---EA-IAAIYRYSNHWRTNTARGGK--AEPC- 211 (280)
T ss_pred EEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECC---EE-EEEEEEcCCchhhhhhcCCc--eecc-
Confidence 99999999988775422 1123457999999953 56777766532 32 222222111 111111211 1122
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcC
Q 001014 898 TISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 898 ~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG 970 (1190)
.++ +++++.++++++++|+ |+++|||+++.+|++||+|+|||++.+. +...+|+|+.+..++.+..
T Consensus 212 ~~~----~~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~~~~~~~~ 277 (280)
T TIGR02144 212 PLD----EEVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN--SVRVTGVNVAGEILEYAVS 277 (280)
T ss_pred CCC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh--hhHhhCCCHHHHHHHHHHH
Confidence 334 3577889999999996 7999999997778999999999997754 3567999999999987643
No 131
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.87 E-value=6e-21 Score=203.04 Aligned_cols=184 Identities=23% Similarity=0.436 Sum_probs=138.7
Q ss_pred HHHHcCCCCCCeeecCCHHHH----HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeee
Q 001014 220 AMKTIGVKTPPSGIGNTLDEC----ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKS 295 (1190)
Q Consensus 220 ~l~~~Gipvp~~~~v~s~~e~----~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~ 295 (1190)
+|+++|||||++..+...+.. .+....++ ||+||||..+++|.|+.+|+|.+||.+++..++.. ++++|||+|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~-~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~--~~~vlVEef 77 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLG-FPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY--DDDVLVEEF 77 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHS-SSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT--HSEEEEEE-
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcC-CCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh--cceEEEEee
Confidence 578999999999999876543 34567899 99999999999999999999999999999998865 569999999
Q ss_pred cCCCeeeeEEEEEeCCCcEEEEEeeeee------CC-CCcc--cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 001014 296 LLGWKEYELEVMRDLADNVVIICSIENV------DP-MGVH--TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECG 366 (1190)
Q Consensus 296 I~G~~E~sv~v~~d~~g~~~~~~~~e~~------~~-~g~~--~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G 366 (1190)
|+| +|++|.++.++. ..++...+.. +. .++. .+......|+. ++++..++|++.|.+++++||++ |
T Consensus 78 I~G-~E~tv~vl~~~~--~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a~~a~~~lg~~-~ 152 (203)
T PF07478_consen 78 ISG-REFTVGVLGNGE--PRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIAKKAFKALGCR-G 152 (203)
T ss_dssp -SS-EEEEEEEEESSS--TEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHHHHHHHHTTTC-S
T ss_pred ecc-cceEEEEEecCC--cccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHHHHHHHHHcCC-C
Confidence 999 999999999554 3333333322 11 1221 25566778887 99999999999999999999997 9
Q ss_pred eEEEEEEEecCCCcEEEEEeC--CCCCCchH--HHHHHhCCCHHHHHHHH
Q 001014 367 GSNVQFAVNPVDGEVMVIEMN--PRVSRSSA--LASKATGFPIAKMAAKL 412 (1190)
Q Consensus 367 ~~~vef~~~~~~g~~~viEiN--pR~~gs~~--l~~~atG~~l~~~~~~~ 412 (1190)
+++|||++++ +|++||+|+| |+++..+. ......|+++.++..++
T Consensus 153 ~~RiD~rv~~-~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVDE-DGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEET-TTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEecc-CCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999997 8899999999 66665543 34556777776665543
No 132
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.87 E-value=4.8e-21 Score=203.78 Aligned_cols=186 Identities=20% Similarity=0.297 Sum_probs=143.6
Q ss_pred HHHHcCCCCCCceeecCHHHH----HHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEec
Q 001014 778 IIKELSIEQPKGGIAKSEADA----LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYL 853 (1190)
Q Consensus 778 ~l~~~gIp~p~~~~~~s~~e~----~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI 853 (1190)
+|+++|||+|+|..+...+.. .+....++||++|||..+++|.|+.+|+|.+||+++++.++.. +.++|||+||
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~--~~~vlVEefI 78 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY--DDDVLVEEFI 78 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT--HSEEEEEE--
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh--cceEEEEeee
Confidence 578999999999998875554 3457789999999999999999999999999999999997753 5689999999
Q ss_pred CCcceEEEeEEecCCCcEEEEeeeeeeecccccccc--------cccccCCCCCCHHHHHHHHHHHHHHHHHcCCCccee
Q 001014 854 SDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGD--------SACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMN 925 (1190)
Q Consensus 854 ~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd--------~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ 925 (1190)
.|+|++|.++.+++ ..+.++.+.....+....+ ......+..++++..++++++|.++.++||++|+++
T Consensus 79 -~G~E~tv~vl~~~~--~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~lg~~~~~R 155 (203)
T PF07478_consen 79 -SGREFTVGVLGNGE--PRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPADLSEELQEKIKEIAKKAFKALGCRGYAR 155 (203)
T ss_dssp -SSEEEEEEEEESSS--TEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred -cccceEEEEEecCC--cccCceEEEEcCCCceehhheeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 99999999999654 5556666655443332221 112223447999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 926 CQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 926 ief~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
|||+++.+|++||+|+|+-+|-+ ++...+..|+++.++..+++
T Consensus 156 iD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~ii 202 (203)
T PF07478_consen 156 IDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERII 202 (203)
T ss_dssp EEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHHH
T ss_pred EEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHHh
Confidence 99999879999999999998853 55567788999999887654
No 133
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.85 E-value=4.2e-20 Score=190.75 Aligned_cols=175 Identities=21% Similarity=0.277 Sum_probs=145.5
Q ss_pred hcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcE-EEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----C
Q 001014 212 EDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPL-IIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----L 286 (1190)
Q Consensus 212 ~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~Pv-VVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~ 286 (1190)
.+|..+|++|+++|||++++..+++.+++.+++++.+ +|+ ||||...++|+||.++.|.+|..+++++++... .
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~-~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~ 79 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQG-YPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDA 79 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHS-SSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCC
T ss_pred CCHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcC-CCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCC
Confidence 3799999999999999999999999999999999999 999 999999999999999999999999999998621 2
Q ss_pred CCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC-----CCcccccEEEEecCCCCCHHHHHHHHH-HHHHHHHH
Q 001014 287 TSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP-----MGVHTGDSITVAPAQTLTDKEYQRLRD-YSIAIIRE 360 (1190)
Q Consensus 287 ~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~-----~g~~~g~~~~~~Pa~~l~~~~~~~l~~-~a~~i~~~ 360 (1190)
...++||||+.| .|+|+.++.|+. +.+.++..+.+.. .|++||.+..++|.+.++++..+++.+ +...++++
T Consensus 80 ~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~ 157 (194)
T PF01071_consen 80 GSKVVIEEFLEG-EEVSLFALTDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKG 157 (194)
T ss_dssp GSSEEEEE---S-EEEEEEEEEESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEeccCC-eEEEEEEEEcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999 999999999865 5667776665433 489999999999999889998888876 66667766
Q ss_pred h-----CCccceEEEEEEEecCCCcEEEEEeCCCCCC
Q 001014 361 I-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSR 392 (1190)
Q Consensus 361 l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~g 392 (1190)
| .++ |++.+.++++ +++|+|||.|.|++.
T Consensus 158 l~~eg~~y~-GvLy~glMlt--~~Gp~vlEfN~RfGD 191 (194)
T PF01071_consen 158 LKKEGIPYR-GVLYAGLMLT--EDGPKVLEFNVRFGD 191 (194)
T ss_dssp HHHTT---E-EEEEEEEEEE--TTEEEEEEEESSGST
T ss_pred HHhcCCCcc-eeeeeeeEEe--CCCcEEEEEeCCCCC
Confidence 6 786 9999999999 556999999999985
No 134
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=99.85 E-value=6.3e-21 Score=183.14 Aligned_cols=109 Identities=47% Similarity=0.732 Sum_probs=102.7
Q ss_pred CceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHhHHHcCcEEEEEEcCCCCCC
Q 001014 1042 GTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVANGQIQMMVITSSGDSL 1121 (1190)
Q Consensus 1042 g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~~i~~~~i~lvint~~~~~~ 1121 (1190)
|++++++.+.+|+.+.+.++.|.++||+|+||.||+++|+++|++++.|.+++++.|++.++|++|+||+|||++++...
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~ 80 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA 80 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCcc
Confidence 56899999999999999999999999999999999999999999999999998889999999999999999999886543
Q ss_pred CCcccHHHHHHHHHCCCcEEccHHHHHHHH
Q 001014 1122 DQIDGLKLRRRGLAYKVPVITTVSGALANA 1151 (1190)
Q Consensus 1122 ~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~ 1151 (1190)
..|||+|||.|+++||||+|++++|++++
T Consensus 81 -~~~~~~iRR~Av~~~ipl~T~~~ta~a~~ 109 (110)
T cd01424 81 -IRDGFSIRRAALEYKVPYFTTLDTARAAV 109 (110)
T ss_pred -CccHHHHHHHHHHhCCCEEecHHHHHHHh
Confidence 68999999999999999999999999976
No 135
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=99.85 E-value=6.7e-21 Score=183.01 Aligned_cols=105 Identities=33% Similarity=0.476 Sum_probs=99.4
Q ss_pred eeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccC-CCCcHHhHHHc-CcEEEEEEcCCCCC-
Q 001014 1044 VFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHE-GRPHAGDMVAN-GQIQMMVITSSGDS- 1120 (1190)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e-~~~~~~~~i~~-~~i~lvint~~~~~- 1120 (1190)
+|+++.+.+|+.+.+.++.+.++||+|+||.||+++|+++|++++.|.|+++ |+|++.++|++ |+||+|||||++..
T Consensus 2 i~isv~d~~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~ 81 (112)
T cd00532 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRD 81 (112)
T ss_pred EEEEEEcccHHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcc
Confidence 7889999999999999999999999999999999999999999999999998 78999999999 99999999998655
Q ss_pred --CCCcccHHHHHHHHHCCCcEEccHHHHHH
Q 001014 1121 --LDQIDGLKLRRRGLAYKVPVITTVSGALA 1149 (1190)
Q Consensus 1121 --~~~~d~~~iRr~A~~~~ip~~T~~~~a~a 1149 (1190)
. ..|||.|||+|++++|||+|++++|..
T Consensus 82 ~~~-~~dg~~iRR~A~~~~Ip~~T~~~ta~~ 111 (112)
T cd00532 82 RCT-DEDGTALLRLARLYKIPVTTPNATAMF 111 (112)
T ss_pred ccc-CCChHHHHHHHHHcCCCEEECHHHHhh
Confidence 4 789999999999999999999999864
No 136
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.84 E-value=7.6e-20 Score=188.90 Aligned_cols=175 Identities=21% Similarity=0.265 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcE-EEecCcCCCCcceEEeCCHHHHHHHHHHhHhh--C--CCC
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPV-VVRPSYVLGGRAMEIVYTDETLVTYLENAVEV--D--PER 845 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPv-vvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~--~--~~~ 845 (1190)
+|.+.|++|+++|||++++..+++.+++.+++++.++|+ ||||....+|+||.++.|.+|..+++++.+.. + ...
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~ 81 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGS 81 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGS
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCC
Confidence 799999999999999999999999999999999999999 99999999999999999999999999987641 1 246
Q ss_pred cEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeee----cccccccccccccCCCCCCHHHHHHHHH-HHHHHHHHc--
Q 001014 846 PVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIE----QAGVHSGDSACMIPTKTISSSCLDTISS-WTIKLAKRL-- 918 (1190)
Q Consensus 846 ~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~~-~a~~i~~~L-- 918 (1190)
+++||||+ .|.|+++.++.|++.-+.++..++|.. ..|...|......|.+.++++..+++.+ +...++++|
T Consensus 82 ~vvIEE~l-~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~~ 160 (194)
T PF01071_consen 82 KVVIEEFL-EGEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLKK 160 (194)
T ss_dssp SEEEEE----SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEEecc-CCeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999 999999999999874444444555542 2356666665666888899988888886 777777766
Q ss_pred ---CCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 919 ---NVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 919 ---g~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
.|+|++.+.+++ ++++++|||.|.|++.
T Consensus 161 eg~~y~GvLy~glMl-t~~Gp~vlEfN~RfGD 191 (194)
T PF01071_consen 161 EGIPYRGVLYAGLML-TEDGPKVLEFNVRFGD 191 (194)
T ss_dssp TT---EEEEEEEEEE-ETTEEEEEEEESSGST
T ss_pred cCCCcceeeeeeeEE-eCCCcEEEEEeCCCCC
Confidence 688999999999 5777999999999986
No 137
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=3.6e-19 Score=200.32 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=216.7
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
.+|.|+=+|.. .++.+.+. ++..++++++..|+++.-++..+........... . ....++|.++
T Consensus 3 ~~vavl~gG~s-~e~eVsl~-sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~~~~vvf 66 (317)
T COG1181 3 MKVAVLLGGRS-AEREVSLL-SAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVT--------K------RVLQKADVVF 66 (317)
T ss_pred eEEEEeeCCcc-ccceEEEe-cHHHHHHHHhhcCceeEEEeccccceEEeccccc--------h------hhcccCCEEE
Confidence 45666654543 45555443 3778888999999999888876532211110000 0 1224456666
Q ss_pred cccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC----HHH
Q 001014 724 VQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS----EAD 797 (1190)
Q Consensus 724 ~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s----~~e 797 (1190)
|..-|. +.-.+...|+ ..| +|+.|++..+...+.||..+|.+++..|+|++++..+.. ...
T Consensus 67 p~lhG~~gEDg~iqg~le----------~~g---iPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~ 133 (317)
T COG1181 67 PVLHGPYGEDGTIQGLLE----------LLG---IPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVI 133 (317)
T ss_pred EeCCCCCCCCchHHHHHH----------HhC---CCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHH
Confidence 554443 3335555666 778 999999999999999999999999999999999988764 233
Q ss_pred HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeee
Q 001014 798 ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIM 877 (1190)
Q Consensus 798 ~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~ 877 (1190)
..+....++||++|||...+++.|+..+++.+|+..+++.++.. +..+++|+|+ .++|++|.++.+.. .....++.
T Consensus 134 ~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~--d~~vl~e~~~-~~rei~v~vl~~~~-~~~~l~~~ 209 (317)
T COG1181 134 VEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY--DRDVLREQGI-TGREIEVGVLGNDY-EEQALPLG 209 (317)
T ss_pred HHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh--CCceeeccCC-CcceEEEEecCCcc-cceecCce
Confidence 45666779999999999999999999999999999988877665 6789999999 69999999998754 45555544
Q ss_pred eeeec---------ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec-CCCEEEEEEccCCCC
Q 001014 878 EHIEQ---------AGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPRASR 947 (1190)
Q Consensus 878 e~~~~---------~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~-~g~~~viEiNpR~~~ 947 (1190)
+-+.. .-...|......|+ .++++..++++++|.++.++||..|++++||++++ +|++|++|+|+.||-
T Consensus 210 eI~~~~~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~ 288 (317)
T COG1181 210 EIPPKGEEFYDYEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGM 288 (317)
T ss_pred EEecCCCeEEeeeccccCCCCceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCC
Confidence 43322 11222333334454 69999999999999999999999999999999965 689999999999995
Q ss_pred C----hhhhhcccCCCHHHHHHHHH
Q 001014 948 T----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 948 s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+ +|......|+++..+.....
T Consensus 289 t~~sl~P~~~~~~gi~~~~L~~~~~ 313 (317)
T COG1181 289 TAMSLFPKAAAAAGISFAILVLRFV 313 (317)
T ss_pred cccccchhhHHHcCCCHHHHHHHHH
Confidence 4 66678889999998887664
No 138
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=99.83 E-value=1.2e-20 Score=182.89 Aligned_cols=110 Identities=28% Similarity=0.421 Sum_probs=100.1
Q ss_pred ceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccC-CC---CcHHhHHHcCcEEEEEEcCCC
Q 001014 1043 TVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHE-GR---PHAGDMVANGQIQMMVITSSG 1118 (1190)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e-~~---~~~~~~i~~~~i~lvint~~~ 1118 (1190)
.+|+++++.+|+.+.++++.|.++||+|+||.||+++|+++|++|+.|.|+++ ++ |++.|+|++|+||+|||+|+.
T Consensus 2 ~vlisv~~~dk~~~~~~a~~l~~~G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~ 81 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSN 81 (116)
T ss_pred cEEEecCcccchhHHHHHHHHHHCCCEEEEccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCC
Confidence 48899999999999999999999999999999999999999999999999865 34 999999999999999999874
Q ss_pred CCCC-CcccHHHHHHHHHCCCcEEccHHHHHHHHH
Q 001014 1119 DSLD-QIDGLKLRRRGLAYKVPVITTVSGALANAE 1152 (1190)
Q Consensus 1119 ~~~~-~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~ 1152 (1190)
.... ..|||+|||.|+++||||||++++|+++++
T Consensus 82 ~~~~~~~~~~~iRr~Av~~~ip~iT~~~~a~~~~~ 116 (116)
T cd01423 82 RGKRVLDNDYVMRRAADDFAVPLITNPKCAKLFIE 116 (116)
T ss_pred CCCccccCcEeeehhhHhhCCcccccHHHHHHhhC
Confidence 3321 578999999999999999999999999874
No 139
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=99.83 E-value=3.7e-20 Score=183.33 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=102.9
Q ss_pred ceeeecCCCChhHHHHHHHHHHHC--CCeeeeccccHHHHHHc-CCceEEEecccC---CCCcHHhHHHcCcEEEEEEcC
Q 001014 1043 TVFLSLNDLTKPHLERIAKAFLDI--GFKIVSTSGTAHFLELK-GIAVERVLKMHE---GRPHAGDMVANGQIQMMVITS 1116 (1190)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~i~a~~gt~~~l~~~-g~~~~~v~~~~e---~~~~~~~~i~~~~i~lvint~ 1116 (1190)
+|++++.+.+|+.+.++++.+.++ ||+|+||.||+++|+++ |++++.| +++ |+|++.++|++|+||+||||+
T Consensus 6 ~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~Gi~v~~v--i~~~~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 6 RIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQEATGLDVTRL--LSGPLGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred EEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHhccCCeeEEE--EcCCCCCchhHHHHHHcCceeEEEEec
Confidence 589999999999999999999999 99999999999999999 9999998 566 789999999999999999998
Q ss_pred --CCCCCCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHHh
Q 001014 1117 --SGDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1117 --~~~~~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~ 1156 (1190)
.+......||+.|||+|++++|||+||+++|.|++++|..
T Consensus 84 dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA~a~~~al~~ 125 (142)
T PRK05234 84 DPLTAQPHDPDVKALLRLADVWNIPVATNRATADFLISSLLF 125 (142)
T ss_pred CCCCCCcccchHHHHHHHHHHcCCCEEcCHHHHHHHHHHHhc
Confidence 4433325789999999999999999999999999999863
No 140
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=99.81 E-value=7.3e-20 Score=175.65 Aligned_cols=103 Identities=24% Similarity=0.331 Sum_probs=95.0
Q ss_pred cCCCChhHHHHHHHHHHHC--CCeeeeccccHHHHHH-cCCceEEEecc--cCCCCcHHhHHHcCcEEEEEEcCC--CCC
Q 001014 1048 LNDLTKPHLERIAKAFLDI--GFKIVSTSGTAHFLEL-KGIAVERVLKM--HEGRPHAGDMVANGQIQMMVITSS--GDS 1120 (1190)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~--g~~i~a~~gt~~~l~~-~g~~~~~v~~~--~e~~~~~~~~i~~~~i~lvint~~--~~~ 1120 (1190)
-.+.+|+++.++++.+.++ ||+|+||.||+++|++ +|++|+.| |+ ++|+|++.|+|++|+||+||||++ +..
T Consensus 6 a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~gTa~~L~~~~Gi~v~~v-k~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~ 84 (115)
T cd01422 6 AHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNRM-KSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQ 84 (115)
T ss_pred ecccchHHHHHHHHHHHHHhcCCEEEEechHHHHHHHhhCCcEEEE-ecCCCCchhHHHHHHHcCceeEEEEcCCCCCCC
Confidence 4678899999999999999 9999999999999999 99999999 98 889999999999999999999988 543
Q ss_pred CCCcccHHHHHHHHHCCCcEEccHHHHHHHH
Q 001014 1121 LDQIDGLKLRRRGLAYKVPVITTVSGALANA 1151 (1190)
Q Consensus 1121 ~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~ 1151 (1190)
....||+.|||.|++++|||+||+++|+|++
T Consensus 85 ~~~~dg~~iRr~a~~~~Ip~~Ttl~ta~A~~ 115 (115)
T cd01422 85 PHEPDVKALLRLCDVYNIPLATNRSTADAII 115 (115)
T ss_pred cccccHHHHHHHHHHcCCCEEEcHHHHHhhC
Confidence 3267999999999999999999999999863
No 141
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=188.53 Aligned_cols=296 Identities=17% Similarity=0.160 Sum_probs=213.1
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-----CcHHHHHHHhhhcC
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-----LTVEDVLNVIDLER 718 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-----~~~e~v~~i~~~~~ 718 (1190)
+-|+||||-.+ ....++++.+.-+.+..+..+--.++ .++++......+ ..+..+.++++++.
T Consensus 4 PgviilGgahg-----------tlalARSfg~~~vpv~~ls~d~plPt-~Sr~vr~t~~w~gphd~gaiafLrd~Aekhg 71 (415)
T COG3919 4 PGVIILGGAHG-----------TLALARSFGEEFVPVLALSADGPLPT-YSRIVRVTTHWNGPHDEGAIAFLRDFAEKHG 71 (415)
T ss_pred CceEEEcccch-----------hHHHHHhhccccceEEEEecCCCCcc-hhhhheeeeccCCCCcccHHHHHHHHHhhcC
Confidence 36899997554 67778888888888888876532222 222332222222 22788899999987
Q ss_pred CCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHH
Q 001014 719 PEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEAD 797 (1190)
Q Consensus 719 ~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e 797 (1190)
-.+-+..-+|. ..+-..+..+ .|++ - +.++-|+...++...+|-.++..+.++|+|.|++..++|..+
T Consensus 72 lkg~LLva~GDgev~lvSq~re-eLSa-------~---f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d 140 (415)
T COG3919 72 LKGYLLVACGDGEVLLVSQYRE-ELSA-------F---FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEID 140 (415)
T ss_pred cCceEEEecCCceeeehHhhHH-HHHH-------H---hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhh
Confidence 76544333333 3322222222 1211 1 456668999999999999999999999999999999998777
Q ss_pred HHHHHHHhCCcEEEecCcCCC-----CcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcce--EEEeEEecCCCc
Q 001014 798 ALAIAKEIGYPVVVRPSYVLG-----GRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIE--IDVDALADSCGN 870 (1190)
Q Consensus 798 ~~~~~~~igyPvvvKP~~~~g-----g~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E--~~v~v~~d~~G~ 870 (1190)
.. ..++-||+|+||..+++ -.....+.|.+|+..++..+.+..+.+.++||+||++|-| ++..++.| +|.
T Consensus 141 ~~--~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~-~g~ 217 (415)
T COG3919 141 TL--VDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWD-KGH 217 (415)
T ss_pred hh--hhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHh-CCC
Confidence 64 56889999999988763 3345667899999999999888778889999999998876 45555667 456
Q ss_pred EEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe-cCCCEEEEEEccCCCCCh
Q 001014 871 VVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT-TSGDVYLLEANPRASRTV 949 (1190)
Q Consensus 871 v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d-~~g~~~viEiNpR~~~s~ 949 (1190)
.+..+......+.++..|...... .+.+ .+++.+.++++++.+++.|+.++||.+| .||.+.++|||||+++++
T Consensus 218 pvaeftarr~rqyPvdfgytst~v---evvD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wf 292 (415)
T COG3919 218 PVAEFTARRLRQYPVDFGYTSTVV---EVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWF 292 (415)
T ss_pred chhhhhcchhhcCCcccccccEEE---EecC--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCccee
Confidence 655444444444444444433322 1122 3778899999999999999999999999 799999999999999987
Q ss_pred hhhhcccCCCHHHHHHHHHcCC
Q 001014 950 PFVSKAIGHPLAKYAALVMSGK 971 (1190)
Q Consensus 950 ~~~~~~~G~~l~~~~~~~~lG~ 971 (1190)
-+ ..+.|+|+-.+..+...+.
T Consensus 293 gl-~taaG~nLg~~Lwa~~~~~ 313 (415)
T COG3919 293 GL-VTAAGYNLGRYLWADRINN 313 (415)
T ss_pred eE-EecccccccceEEeeecCC
Confidence 66 5568999988877776665
No 142
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.80 E-value=1.7e-19 Score=185.68 Aligned_cols=160 Identities=20% Similarity=0.304 Sum_probs=94.4
Q ss_pred HhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcE
Q 001014 211 AEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQV 290 (1190)
Q Consensus 211 ~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~v 290 (1190)
|.||.+++++|+++|||+|......... ... +|+|+||.+|.||.|+.++++.+++...... ..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~-~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------~~ 64 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE-------PID-GPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------LR 64 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS---------S-SSEEEEESS-------B--SS--TTE---------------
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc-------ccC-CcEEEEeCCCCCCCCeEEECCchhhcccccc--------ce
Confidence 6899999999999999999332221111 225 8999999999999999999999988765543 23
Q ss_pred EEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh-CCccceEE
Q 001014 291 LVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI-GVECGGSN 369 (1190)
Q Consensus 291 lVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l-g~~~G~~~ 369 (1190)
++|+||+| .++|+.++.+.++..++..+.+.+.....+........|.. . ....++.+++.+++++| |+. |.++
T Consensus 65 i~Qe~i~G-~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~-~--~~~~~~~~~~~~i~~~l~gl~-G~~g 139 (161)
T PF02655_consen 65 IVQEFIEG-EPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD-T--PLKEEIIELARRIAEALPGLR-GYVG 139 (161)
T ss_dssp EEEE---S-EEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT---EEEE
T ss_pred EEeeeeCC-EEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC-C--chHHHHHHHHHHHHHHcCCCe-eeEe
Confidence 99999999 99999999987766666667776653222122233455664 3 33788999999999999 996 9999
Q ss_pred EEEEEecCCCcEEEEEeCCCCCCc
Q 001014 370 VQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 370 vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
|||+++ ++++|+||||||+++|
T Consensus 140 iD~I~~--~~~~~viEINPR~t~S 161 (161)
T PF02655_consen 140 IDFILD--DGGPYVIEINPRFTGS 161 (161)
T ss_dssp EEEEES--S-SEEEEEEESS--GG
T ss_pred EEEEEe--CCcEEEEEEcCCCCCC
Confidence 999998 6899999999999875
No 143
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.79 E-value=8.2e-19 Score=183.37 Aligned_cols=294 Identities=16% Similarity=0.208 Sum_probs=206.4
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE--ECCCC---HHHHHHHHHHcCC
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY--ITPMT---PELVEQVLEKERP 168 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~--i~p~~---~~~v~~i~~~~~~ 168 (1190)
-|+||||-.. ...+++++.++-+.|.++..+.-.+. .++++.... -.|-+ ...+.+++++++.
T Consensus 5 gviilGgahg-----------tlalARSfg~~~vpv~~ls~d~plPt-~Sr~vr~t~~w~gphd~gaiafLrd~Aekhgl 72 (415)
T COG3919 5 GVIILGGAHG-----------TLALARSFGEEFVPVLALSADGPLPT-YSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGL 72 (415)
T ss_pred ceEEEcccch-----------hHHHHHhhccccceEEEEecCCCCcc-hhhhheeeeccCCCCcccHHHHHHHHHhhcCc
Confidence 5899998743 56889999999988888865433332 456665443 33333 2467778887766
Q ss_pred CEEEec-CCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc
Q 001014 169 DALLPT-MGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI 247 (1190)
Q Consensus 169 d~Vip~-~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i 247 (1190)
...+.. .|+...+-....- .++-+.+.++ -|+....+...+|-.+.+.+.++|+|.|++..++|..+. ...++
T Consensus 73 kg~LLva~GDgev~lvSq~r--eeLSa~f~v~--lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~--~~~el 146 (415)
T COG3919 73 KGYLLVACGDGEVLLVSQYR--EELSAFFEVP--LPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDT--LVDEL 146 (415)
T ss_pred CceEEEecCCceeeehHhhH--HHHHHHhcCC--CCcHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhhh--hhhhe
Confidence 543332 2221221111111 1233334444 569999999999999999999999999999999975544 35688
Q ss_pred CCCcEEEecCCCCCC-----cceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCC--eeeeEEEEEeCCCcEEEEEee
Q 001014 248 GEFPLIIRPAFTLGG-----TGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGW--KEYELEVMRDLADNVVIICSI 320 (1190)
Q Consensus 248 g~~PvVVKP~~g~gg-----~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~--~E~sv~v~~d~~g~~~~~~~~ 320 (1190)
. ||+|+||-.|.+- .-...+.+.+|+..++..+....+.++++|||+|+|. ..+++.++.+. |+.+.-|..
T Consensus 147 ~-FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~-g~pvaefta 224 (415)
T COG3919 147 T-FPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDK-GHPVAEFTA 224 (415)
T ss_pred e-eeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhC-CCchhhhhc
Confidence 8 9999999987742 2346688999999999988887777899999999986 45667777764 455555544
Q ss_pred eeeCCCCccc--ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHH
Q 001014 321 ENVDPMGVHT--GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALAS 398 (1190)
Q Consensus 321 e~~~~~g~~~--g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~ 398 (1190)
.+.....+.. +......|. .+++.++++++++.++.. |..++||.+|++||.+.++|||||++.++.+..
T Consensus 225 rr~rqyPvdfgytst~vevvD-------n~Q~i~aar~~L~si~ht-GlvevefK~D~RDGs~KlldvNpRpw~wfgl~t 296 (415)
T COG3919 225 RRLRQYPVDFGYTSTVVEVVD-------NQQVIQAARDFLESIEHT-GLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVT 296 (415)
T ss_pred chhhcCCcccccccEEEEecC-------cHHHHHHHHHHHHhhccc-ceEEEEEEecCCCCceeEEeecCCCcceeeEEe
Confidence 3332222222 233333332 467889999999999996 999999999999999999999999999875533
Q ss_pred HHhCCCHHHHHHHHHcCC
Q 001014 399 KATGFPIAKMAAKLSVGY 416 (1190)
Q Consensus 399 ~atG~~l~~~~~~~alG~ 416 (1190)
+.|+|+-....+...+.
T Consensus 297 -aaG~nLg~~Lwa~~~~~ 313 (415)
T COG3919 297 -AAGYNLGRYLWADRINN 313 (415)
T ss_pred -cccccccceEEeeecCC
Confidence 46888777666655443
No 144
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.79 E-value=2.7e-19 Score=184.12 Aligned_cols=159 Identities=20% Similarity=0.362 Sum_probs=90.3
Q ss_pred ccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEE
Q 001014 769 AEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVL 848 (1190)
Q Consensus 769 ~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vl 848 (1190)
|.||.+++++|+++|||+|......... ...+|+|+||..|.||.|+.++.+.+++...+.. ..+
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------~~i 65 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE-------PIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------LRI 65 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS---------SSSEEEEESS-------B--SS--TTE---------------E
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc-------ccCCcEEEEeCCCCCCCCeEEECCchhhcccccc--------ceE
Confidence 6899999999999999999433222211 2379999999999999999999999988765443 129
Q ss_pred EEEecCCcceEEEeEEecCCCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHc-CCCcceeE
Q 001014 849 IDKYLSDAIEIDVDALADSCGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRL-NVCGLMNC 926 (1190)
Q Consensus 849 iEefI~~g~E~~v~v~~d~~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~L-g~~G~~~i 926 (1190)
+|+|| .|.++++.++.++. +....++.+. +.....+..-.....|.. ....+++.+++++++++| |+.|.++|
T Consensus 66 ~Qe~i-~G~~~Sv~~l~~~~-~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl~G~~gi 140 (161)
T PF02655_consen 66 VQEFI-EGEPYSVSFLASGG-GARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGLRGYVGI 140 (161)
T ss_dssp EEE----SEEEEEEEEE-SS-SEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--EEEEE
T ss_pred Eeeee-CCEEeEEEEEEeCC-ceEEEEechHhhccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCCeeeEeE
Confidence 99999 89999999999865 5555555544 432111111122333432 233789999999999999 99999999
Q ss_pred EEEEecCCCEEEEEEccCCCCC
Q 001014 927 QYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 927 ef~~d~~g~~~viEiNpR~~~s 948 (1190)
||++ .++++||||||||+++|
T Consensus 141 D~I~-~~~~~~viEINPR~t~S 161 (161)
T PF02655_consen 141 DFIL-DDGGPYVIEINPRFTGS 161 (161)
T ss_dssp EEEE-SS-SEEEEEEESS--GG
T ss_pred EEEE-eCCcEEEEEEcCCCCCC
Confidence 9999 67999999999999874
No 145
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.7e-17 Score=184.72 Aligned_cols=277 Identities=17% Similarity=0.244 Sum_probs=187.1
Q ss_pred hhHHHHHHHHHhCCCeEEEecCCCCCcCccccCC--------cceeecCCcHHHHHHHhhhcCCCccccccCCch--hhh
Q 001014 664 YCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTS--------DRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQT--PLK 733 (1190)
Q Consensus 664 ~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~a--------d~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~--~~~ 733 (1190)
+++....+++++.|+++.++++.........-.+ +.... -...............|+++.-.+... ...
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~ 95 (318)
T COG0189 17 DTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGL-HYELIEEEDLSLLDELDVIIMRKDPPFDFATR 95 (318)
T ss_pred chHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhhcccc-ccccccccccchhccCCEEEEecCCchhhHHH
Confidence 4567778899999999999987643322210000 00000 000000111122235677765555442 234
Q ss_pred hhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHH-hCCcEEEe
Q 001014 734 LSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKE-IGYPVVVR 812 (1190)
Q Consensus 734 la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~-igyPvvvK 812 (1190)
++..++ ..| ++++ +++.++..|.||..+.++|.+.|+|+|++.+..+.+++..+.++ +|||+|+|
T Consensus 96 ~~~~~E----------~~G---~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlK 161 (318)
T COG0189 96 FLRLAE----------RKG---VPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLK 161 (318)
T ss_pred HHHHHH----------HcC---CeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcCCCEEEe
Confidence 555666 889 7777 59999999999999999999999999999999998666666554 78999999
Q ss_pred cCcCCCCcceEEeCCHH-HHHHHHHHhHhhCCCCcEEEEEecCCcc-eEEEeEEecCCCcEEEEeeeeeee-----cccc
Q 001014 813 PSYVLGGRAMEIVYTDE-TLVTYLENAVEVDPERPVLIDKYLSDAI-EIDVDALADSCGNVVIGGIMEHIE-----QAGV 885 (1190)
Q Consensus 813 P~~~~gg~Gv~iv~~~~-el~~~~~~~~~~~~~~~vliEefI~~g~-E~~v~v~~d~~G~v~~~~i~e~~~-----~~g~ 885 (1190)
|.+|++|+||.++.|.+ ++.+.++..... ....+++|+||+... ..-.-++.| |.+...-.+..+. +...
T Consensus 162 p~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~-~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~~~~~~R~N~ 238 (318)
T COG0189 162 PLDGSGGRGVFLVEDADPELLSLLETLTQE-GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIPASGDFRSNL 238 (318)
T ss_pred eCCCCCccceEEecCCChhHHHHHHHHhcc-ccceEehhhhcCcccCCcEEEEEeC--CEEeEEeeeccccCCCCceeec
Confidence 99999999999999999 888887764432 234799999997666 443334444 3443321222221 1122
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHH
Q 001014 886 HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAA 965 (1190)
Q Consensus 886 ~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~ 965 (1190)
+.|... .+..++ ++++++|.+++++||. ++.+||++. .++++||+|||+.+++-.. +...+|++....+.
T Consensus 239 a~Gg~~---e~~~l~----~e~~elA~kaa~~lGl-~~~GVDiie-~~~g~~V~EVN~sP~~~~~-i~~~~g~~~~~~~~ 308 (318)
T COG0189 239 ARGGRA---EPCELT----EEEEELAVKAAPALGL-GLVGVDIIE-DKDGLYVTEVNVSPTGKGE-IERVTGVNIAGLII 308 (318)
T ss_pred cccccc---cccCCC----HHHHHHHHHHHHHhCC-eEEEEEEEe-cCCCcEEEEEeCCCccccc-hhhhcCCchHHHHH
Confidence 323222 222444 4678899999999987 899999999 5889999999996655443 36678899998888
Q ss_pred HHH
Q 001014 966 LVM 968 (1190)
Q Consensus 966 ~~~ 968 (1190)
+++
T Consensus 309 ~~i 311 (318)
T COG0189 309 DAI 311 (318)
T ss_pred HHH
Confidence 765
No 146
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=8.5e-17 Score=181.77 Aligned_cols=280 Identities=16% Similarity=0.243 Sum_probs=192.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcce--EEE----CC-CCHHHHHHHHHHcCCCEEEecCCChhHHHHHH
Q 001014 113 YSGTQACKALKEEGYEVILINSNPATIMTDPGLADR--TYI----TP-MTPELVEQVLEKERPDALLPTMGGQTALNLAV 185 (1190)
Q Consensus 113 ~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~--~~i----~p-~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~ 185 (1190)
++.....+++++.|+++..+++.........-.+.. ..+ .. ...............|++++-.+..... +.
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~--~~ 94 (318)
T COG0189 17 DTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDF--AT 94 (318)
T ss_pred chHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhh--HH
Confidence 566788899999999999997654322111100100 000 00 0000111112234689999877754443 22
Q ss_pred HHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH-HcCCCcEEEecCCCCCCcc
Q 001014 186 ALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIAN-EIGEFPLIIRPAFTLGGTG 264 (1190)
Q Consensus 186 ~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~-~ig~~PvVVKP~~g~gg~G 264 (1190)
.+ ...+|..|++++ +++.++..|.||..+.+++..+|+|+|++.++.+.+++..+.+ .+| ||+|+||.+|++|+|
T Consensus 95 ~~--~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g-~pvVlKp~~Gs~G~g 170 (318)
T COG0189 95 RF--LRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLG-FPVVLKPLDGSGGRG 170 (318)
T ss_pred HH--HHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcC-CCEEEeeCCCCCccc
Confidence 22 336888999998 8999999999999999999999999999999999866666654 567 999999999999999
Q ss_pred eEEeCCHH-HHHHHHHHHHhcCCCCcEEEeeecCCCe-eeeEEEEEeCCCcEEEEEeeeeeCCC-----CcccccEEEEe
Q 001014 265 GGIAYNKE-EFEAICKAGLAASLTSQVLVEKSLLGWK-EYELEVMRDLADNVVIICSIENVDPM-----GVHTGDSITVA 337 (1190)
Q Consensus 265 v~iv~~~~-el~~~~~~~~~~~~~~~vlVEe~I~G~~-E~sv~v~~d~~g~~~~~~~~e~~~~~-----g~~~g~~~~~~ 337 (1190)
|.++++.+ ++.+.++.....+ ...+|+||||+-.. .+-..++. ++.++....++++... ..+.|.. ..
T Consensus 171 V~~v~~~d~~l~~~~e~~~~~~-~~~~ivQeyi~~~~~~~rrivv~--~~~~~~~y~~~R~~~~~~~R~N~a~Gg~--~e 245 (318)
T COG0189 171 VFLVEDADPELLSLLETLTQEG-RKLIIVQEYIPKAKRDDRRVLVG--GGEVVAIYALARIPASGDFRSNLARGGR--AE 245 (318)
T ss_pred eEEecCCChhHHHHHHHHhccc-cceEehhhhcCcccCCcEEEEEe--CCEEeEEeeeccccCCCCceeecccccc--cc
Confidence 99999999 8888887765542 34699999999543 33344443 3344433134443321 1222332 23
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHH
Q 001014 338 PAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 338 Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~a 413 (1190)
|.. +++ ++++.|.+++.+||+ ++++||++.+ ++++||+|||+.+++-. .+...+|++....+.+..
T Consensus 246 ~~~-l~~----e~~elA~kaa~~lGl--~~~GVDiie~--~~g~~V~EVN~sP~~~~-~i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 246 PCE-LTE----EEEELAVKAAPALGL--GLVGVDIIED--KDGLYVTEVNVSPTGKG-EIERVTGVNIAGLIIDAI 311 (318)
T ss_pred ccC-CCH----HHHHHHHHHHHHhCC--eEEEEEEEec--CCCcEEEEEeCCCcccc-chhhhcCCchHHHHHHHH
Confidence 333 554 468899999999998 8999999999 77899999999655543 346678899988887753
No 147
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.73 E-value=1.4e-16 Score=168.84 Aligned_cols=181 Identities=23% Similarity=0.368 Sum_probs=108.9
Q ss_pred HhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc-CCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCc
Q 001014 211 AEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI-GEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQ 289 (1190)
Q Consensus 211 ~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i-g~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~ 289 (1190)
+.||..+.++|+++|+|+|++..+.+.+++.++.+++ + ||+|+||..|..|.|+.++++.+++...++..... ...
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~-~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~--~~~ 77 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGG-FPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL--ENP 77 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH---SSEEEE-SB-------EEEESHCHHHHHHH-------TTT
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC-CCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc--cCc
Confidence 5799999999999999999999999999999999999 8 99999999999999999999999999987764433 468
Q ss_pred EEEeeecCCC--eeeeEEEEEeCCCcEEEEEeeeeeCCC-----CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhC
Q 001014 290 VLVEKSLLGW--KEYELEVMRDLADNVVIICSIENVDPM-----GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIG 362 (1190)
Q Consensus 290 vlVEe~I~G~--~E~sv~v~~d~~g~~~~~~~~e~~~~~-----g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg 362 (1190)
+++|+||+.. .++.|.++. |.++.. ..+..+. ..+.|.. ..|.. +++ ++.+.|.++++++|
T Consensus 78 ~~~Q~fI~~~~g~d~Rv~Vig---~~vv~a--~~r~~~~~d~r~n~~~g~~--~~~~~-l~~----e~~~~a~~~~~~lg 145 (190)
T PF08443_consen 78 ILVQEFIPKDGGRDLRVYVIG---GKVVGA--YRRSSPEGDFRTNLSRGGK--VEPYD-LPE----EIKELALKAARALG 145 (190)
T ss_dssp -EEEE----SS---EEEEEET---TEEEEE--EE--------------------EE-----H----HHHHHHHHHHHHTT
T ss_pred ceEeccccCCCCcEEEEEEEC---CEEEEE--EEEecCcccchhhhccCce--EEEec-CCH----HHHHHHHHHHHHhC
Confidence 8999999964 377777773 444433 2222111 1222322 23443 554 57788999999999
Q ss_pred CccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 001014 363 VECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 363 ~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~ 412 (1190)
+ .+++||++.+ ++++||+||||.++-. ..+..+|+|++...++.
T Consensus 146 l--~~~giDi~~~--~~~~~v~EvN~~~~~~--~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 146 L--DFAGIDILDT--NDGPYVLEVNPNPGFR--GIEEATGIDIAEEIAEY 189 (190)
T ss_dssp ---SEEEEEEEEE--TTEEEEEEEETT---T--THHHHH---HHHHHHHH
T ss_pred C--CEEEEEEEec--CCCeEEEEecCCchHh--HHHHHHCcCHHHHHHhh
Confidence 9 7999996655 6679999999877643 35778999999998764
No 148
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.72 E-value=8.6e-17 Score=170.51 Aligned_cols=182 Identities=21% Similarity=0.372 Sum_probs=109.3
Q ss_pred ccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh-CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcE
Q 001014 769 AEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI-GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPV 847 (1190)
Q Consensus 769 ~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i-gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~v 847 (1190)
+.||..+.++|+++|||+|++.++.+.+++.++.+++ +||+|+||.++..|+||.++++.+++...++..... ..++
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~--~~~~ 78 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL--ENPI 78 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH-------TTT-
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc--cCcc
Confidence 4799999999999999999999999999999999999 899999999999999999999999999887753322 4688
Q ss_pred EEEEecCCc--ceEEEeEEecCCCcEEEEeeeeeee----cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 001014 848 LIDKYLSDA--IEIDVDALADSCGNVVIGGIMEHIE----QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVC 921 (1190)
Q Consensus 848 liEefI~~g--~E~~v~v~~d~~G~v~~~~i~e~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~ 921 (1190)
++|+||+.. .++.|.++.+ +++ ........ ....+.|...... .++ +++.+.+.++++++|+
T Consensus 79 ~~Q~fI~~~~g~d~Rv~Vig~---~vv-~a~~r~~~~~d~r~n~~~g~~~~~~---~l~----~e~~~~a~~~~~~lgl- 146 (190)
T PF08443_consen 79 LVQEFIPKDGGRDLRVYVIGG---KVV-GAYRRSSPEGDFRTNLSRGGKVEPY---DLP----EEIKELALKAARALGL- 146 (190)
T ss_dssp EEEE----SS---EEEEEETT---EEE-EEEE------------------EE-----------HHHHHHHHHHHHHTT--
T ss_pred eEeccccCCCCcEEEEEEECC---EEE-EEEEEecCcccchhhhccCceEEEe---cCC----HHHHHHHHHHHHHhCC-
Confidence 999999654 5888877754 443 22221111 1112222221111 233 5678889999999998
Q ss_pred cceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHH
Q 001014 922 GLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 922 G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~ 967 (1190)
.+++||++. .++++||+||||.++-.. +...+|+|+++..++.
T Consensus 147 ~~~giDi~~-~~~~~~v~EvN~~~~~~~--~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 147 DFAGIDILD-TNDGPYVLEVNPNPGFRG--IEEATGIDIAEEIAEY 189 (190)
T ss_dssp SEEEEEEEE-ETTEEEEEEEETT---TT--HHHHH---HHHHHHHH
T ss_pred CEEEEEEEe-cCCCeEEEEecCCchHhH--HHHHHCcCHHHHHHhh
Confidence 799999655 778899999999887543 5778999999988764
No 149
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.70 E-value=3.1e-15 Score=182.23 Aligned_cols=230 Identities=17% Similarity=0.234 Sum_probs=165.9
Q ss_pred HHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHh---hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeee
Q 001014 157 ELVEQVLEKERPDALLPTMGGQTALNLAVALAES---GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI 233 (1190)
Q Consensus 157 ~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~---~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~ 233 (1190)
+.+.+.+++.++++++...++... .+... ..++. .+. .-+++.+++++.||..++++|+++|||+|++..
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~-----~L~~g~~~~~~~~-s~~-~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~ 317 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLF-----RLSLGGRSIRCRE-SLS-ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQL 317 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEE-----EecCCceEEEEEe-ccC-CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEE
Confidence 678999999999999865432110 00000 00000 011 125889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEE-eCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCC
Q 001014 234 GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI-AYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLAD 312 (1190)
Q Consensus 234 v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~i-v~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g 312 (1190)
+.+.+++.++++++| |+||||..|++|+|+.+ +++.++|.++++.+... ...++||+||+| .|+.+.|+. |
T Consensus 318 ~~~~~~~~~~~~~~G--~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~--~~~vlvEe~i~G-~d~Rv~Vig---g 389 (547)
T TIGR03103 318 AGNGEAVEAFLAEHG--AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF--CDRVLLERYVPG-EDLRLVVID---F 389 (547)
T ss_pred ECCHHHHHHHHHHhC--CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc--CCcEEEEEeccC-CeEEEEEEC---C
Confidence 999999999999998 59999999999999997 99999999999988766 358999999999 899887663 3
Q ss_pred cEEEEEeee-------------------eeCC------------------------------------------CCcccc
Q 001014 313 NVVIICSIE-------------------NVDP------------------------------------------MGVHTG 331 (1190)
Q Consensus 313 ~~~~~~~~e-------------------~~~~------------------------------------------~g~~~g 331 (1190)
+++...... +.++ ...++|
T Consensus 390 ~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tG 469 (547)
T TIGR03103 390 EVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTG 469 (547)
T ss_pred EEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCC
Confidence 444331110 1000 011223
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec-CCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHH
Q 001014 332 DSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP-VDGEVMVIEMNPRVSRSSALASKATGFPIAKMAA 410 (1190)
Q Consensus 332 ~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~-~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~ 410 (1190)
.... .++++....+.++|.++++++|+ .++.||++.+. ....+.|||+|.|++=..+ ..-|.++..+
T Consensus 470 g~~~-----dvtd~~~~~~~~~A~~aa~~~gl--~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h-----~~~~~~~~~~ 537 (547)
T TIGR03103 470 GTIH-----DVTEQLHPDLREAAERAARALDI--PVVGIDFLVPDVTGPDYVIIEANERPGLANH-----EPQPTAERFI 537 (547)
T ss_pred CeeE-----ecccccCHHHHHHHHHHHHHhCC--CeEEEEEEeccCCCCCeEEEEecCCcccccc-----CCCchHHHHH
Confidence 2222 25677888899999999999999 79999999863 2335699999988765433 2345556555
Q ss_pred HHH
Q 001014 411 KLS 413 (1190)
Q Consensus 411 ~~a 413 (1190)
...
T Consensus 538 d~l 540 (547)
T TIGR03103 538 DLL 540 (547)
T ss_pred HHh
Confidence 543
No 150
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=99.70 E-value=3.4e-17 Score=151.01 Aligned_cols=87 Identities=33% Similarity=0.498 Sum_probs=79.1
Q ss_pred HHHHHHHHHHCCCeeeeccccHHHHHHcCCceE-EEecccCCCCcHHhHHHcCcEEEEEEcCCC-CCCCCcccHHHHHHH
Q 001014 1056 LERIAKAFLDIGFKIVSTSGTAHFLELKGIAVE-RVLKMHEGRPHAGDMVANGQIQMMVITSSG-DSLDQIDGLKLRRRG 1133 (1190)
Q Consensus 1056 ~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~-~v~~~~e~~~~~~~~i~~~~i~lvint~~~-~~~~~~d~~~iRr~A 1133 (1190)
+.++++.|.++||+|+||.||+++|+++|++++ .+.|+++|.|++.+++++|+||+||||++. ......|||.|||.|
T Consensus 2 ~~~~~~~l~~lG~~i~AT~gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A 81 (90)
T smart00851 2 LVELAKRLAELGFELVATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAA 81 (90)
T ss_pred HHHHHHHHHHCCCEEEEccHHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHH
Confidence 568899999999999999999999999999996 789999999999999999999999999874 222257899999999
Q ss_pred HHCCCcEEc
Q 001014 1134 LAYKVPVIT 1142 (1190)
Q Consensus 1134 ~~~~ip~~T 1142 (1190)
++++|||+|
T Consensus 82 ~~~~Ip~~T 90 (90)
T smart00851 82 ENIDIPGAT 90 (90)
T ss_pred HHcCCCeeC
Confidence 999999997
No 151
>PRK12458 glutathione synthetase; Provisional
Probab=99.69 E-value=6.2e-15 Score=169.58 Aligned_cols=278 Identities=16% Similarity=0.121 Sum_probs=179.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC----CHHHHHHHH----------HHcCCCEEEecCCC
Q 001014 112 DYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM----TPELVEQVL----------EKERPDALLPTMGG 177 (1190)
Q Consensus 112 d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~----~~~~v~~i~----------~~~~~d~Vip~~~g 177 (1190)
.+|...++.++++.||++.++++..-....+...+....+... +.+...... .-..+|+|++-.+.
T Consensus 10 ~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~~ 89 (338)
T PRK12458 10 TDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRANP 89 (338)
T ss_pred CchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCCC
Confidence 3789999999999999999998765443322222222222110 011111111 12358999975443
Q ss_pred hhHHHHHHHHHHh-----hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc-
Q 001014 178 QTALNLAVALAES-----GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP- 251 (1190)
Q Consensus 178 ~~~~~~~~~l~~~-----~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P- 251 (1190)
.........+... .+++..|++++ ++++++..+.||..+.++++ +++|++....+.+++.++.++.+ +|
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~-~~p 164 (338)
T PRK12458 90 PLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESP-GDK 164 (338)
T ss_pred CCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcC-CCe
Confidence 3222222222211 34567788777 89999999999999977665 68999998899999999999897 65
Q ss_pred EEEecCCCCCCcceEEeCCHHH--HHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEE----EEEeeeeeCC
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEE--FEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVV----IICSIENVDP 325 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~e--l~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~----~~~~~e~~~~ 325 (1190)
+|+||..|.||.|+.++++.++ +...++.... ...+++|+||++.++.++.++.- +|+++ ....+.+...
T Consensus 165 vVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~---~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~g~~~a~~R~~~ 240 (338)
T PRK12458 165 MILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG---DGYVIAQEYLPGAEEGDVRILLL-NGEPLERDGHYAAMRRVPA 240 (338)
T ss_pred EEEEECCCCCccCeEEEecCChhhHHHHHHHHhh---CCCEEEEEcccCCCCCCEEEEEE-CCEEEeeccceeEEEEecC
Confidence 9999999999999999987664 5555544322 34799999999754455555432 45555 0112222211
Q ss_pred -----CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh---CCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 326 -----MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI---GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 326 -----~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l---g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
.+.+.|.. ..+.. ++++ .++.|.++...| |+ .+++||++ . .+++|||++..+.....
T Consensus 241 ~~d~RsN~~~Gg~--~~~~~-l~~~----~~~ia~~~~~~l~~~GL--~~~gVDli-~-----~~l~EIN~~sp~g~~~~ 305 (338)
T PRK12458 241 GGDVRSNVHAGGS--VVKHT-LTKE----ELELCEAIRPKLVRDGL--FFVGLDIV-G-----DKLVEVNVFSPGGLTRI 305 (338)
T ss_pred CCCeeecccCCCc--ccCcC-CCHH----HHHHHHHHHHHHhhcCC--eEEeEEEE-C-----CEEEEEeCCCcchHHHH
Confidence 12333332 22332 6655 455555665555 66 58999997 2 25899999877666667
Q ss_pred HHHhCCCHHHHHHHHH
Q 001014 398 SKATGFPIAKMAAKLS 413 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~a 413 (1190)
..++|+|++...++..
T Consensus 306 ~~~~g~d~a~~i~~~i 321 (338)
T PRK12458 306 NKLNKIDFVEDIIEAL 321 (338)
T ss_pred HHHhCCCHHHHHHHHH
Confidence 8889999999998864
No 152
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.67 E-value=5e-15 Score=186.25 Aligned_cols=242 Identities=20% Similarity=0.270 Sum_probs=173.5
Q ss_pred eEEECCCCHHHHHHHHHHcCCCE--------EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHH
Q 001014 148 RTYITPMTPELVEQVLEKERPDA--------LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQ 219 (1190)
Q Consensus 148 ~~~i~p~~~~~v~~i~~~~~~d~--------Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~ 219 (1190)
..++.|.+ ..+.+.+++.++++ +.+++| ..++ ..+..+. .+++..+++++.||..+++
T Consensus 155 ~~~lgpst-~~I~~~A~~~gi~~~~l~~~~~v~lgyG---------~~~~--~i~~~~~--~~~s~~a~~i~~DK~~tk~ 220 (727)
T PRK14016 155 DERLGPST-AAIVDAAEARGIPYIRLGDGSLVQLGYG---------KYQR--RIQAAET--DQTSAIAVDIACDKELTKR 220 (727)
T ss_pred hcccCCCH-HHHHHHHHHcCCCEEEeCCCCeEecCCc---------HHHH--HHHHhcC--CCCcHHHHHHhCCHHHHHH
Confidence 34466644 57888899999988 667666 3322 2333333 3789999999999999999
Q ss_pred HHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEE-eCCHHHHHHHHHHHHhcCCCCcEEEeeecCC
Q 001014 220 AMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI-AYNKEEFEAICKAGLAASLTSQVLVEKSLLG 298 (1190)
Q Consensus 220 ~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~i-v~~~~el~~~~~~~~~~~~~~~vlVEe~I~G 298 (1190)
+|+++|||+|++..+.+.+++.++++++| ||+||||..|++|+|+.+ +++.+|+.++++.+... ...++||+||+|
T Consensus 221 lL~~~GIPvP~~~~v~s~~~a~~~a~~iG-~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~--~~~viVEe~I~G 297 (727)
T PRK14016 221 LLAAAGVPVPEGRVVTSAEDAWEAAEEIG-YPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE--SSDVIVERYIPG 297 (727)
T ss_pred HHHHCCcCCCCeeEeCCHHHHHHHHHHcC-CCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh--CCeEEEEEecCC
Confidence 99999999999999999999999999999 999999999999999998 99999999999887765 358999999999
Q ss_pred CeeeeEEEEEeCCCcEEEEEeee-------------------eeCCC-Cc------------------------------
Q 001014 299 WKEYELEVMRDLADNVVIICSIE-------------------NVDPM-GV------------------------------ 328 (1190)
Q Consensus 299 ~~E~sv~v~~d~~g~~~~~~~~e-------------------~~~~~-g~------------------------------ 328 (1190)
+|+.+.++. |+++..+-.. |.+|. |.
T Consensus 298 -~d~Rv~Vvg---g~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~ 373 (727)
T PRK14016 298 -KDHRLLVVG---GKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVP 373 (727)
T ss_pred -ceEEEEEEC---CEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccC
Confidence 899987653 4555432111 11110 00
Q ss_pred ccccEEEEec---------CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec-----CCCcEEEEEeCCCCCCch
Q 001014 329 HTGDSITVAP---------AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP-----VDGEVMVIEMNPRVSRSS 394 (1190)
Q Consensus 329 ~~g~~~~~~P---------a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~-----~~g~~~viEiNpR~~gs~ 394 (1190)
..|..+.... +...++...+++.+.|.++++.+|+ +++.||++.+. +..+..|+|||..++=..
T Consensus 374 ~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl--~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~ 451 (727)
T PRK14016 374 PKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL--DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRM 451 (727)
T ss_pred CCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC--CEEEEEEEecCcccccccCCcEEEEEcCCcchhh
Confidence 0122222211 1124566777889999999999999 89999998863 124578999996655332
Q ss_pred HH-HHHHhCCCHHHHHHHH
Q 001014 395 AL-ASKATGFPIAKMAAKL 412 (1190)
Q Consensus 395 ~l-~~~atG~~l~~~~~~~ 412 (1190)
+. ....++.+.....+..
T Consensus 452 ~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 452 HLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred ccCCCCCcchhHHHHHHHH
Confidence 11 1122345555555544
No 153
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=99.67 E-value=4.4e-17 Score=151.75 Aligned_cols=87 Identities=38% Similarity=0.646 Sum_probs=72.3
Q ss_pred HHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEE-ecccCC-CCc----HHhHHHcCcEEEEEEcCCCCCCCCc-ccHH
Q 001014 1056 LERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERV-LKMHEG-RPH----AGDMVANGQIQMMVITSSGDSLDQI-DGLK 1128 (1190)
Q Consensus 1056 ~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v-~~~~e~-~~~----~~~~i~~~~i~lvint~~~~~~~~~-d~~~ 1128 (1190)
+++++++|.++||+|+||.||+++|+++||++..+ .+.+++ .++ +.++|++|+||||||+++....... |||.
T Consensus 2 ~~~~a~~l~~lG~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~ 81 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEHTDGYK 81 (95)
T ss_dssp HHHHHHHHHHTTSEEEEEHHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCEEEEChHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCcccccCCcHH
Confidence 68899999999999999999999999999995555 445666 567 9999999999999999987543233 9999
Q ss_pred HHHHHHHCCCcEEc
Q 001014 1129 LRRRGLAYKVPVIT 1142 (1190)
Q Consensus 1129 iRr~A~~~~ip~~T 1142 (1190)
|||+|++++|||+|
T Consensus 82 irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 82 IRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHHHTTSHEEC
T ss_pred HHHHHHHcCCCCcC
Confidence 99999999999998
No 154
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.66 E-value=5.8e-15 Score=179.93 Aligned_cols=238 Identities=17% Similarity=0.230 Sum_probs=165.3
Q ss_pred HHHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 707 VEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 707 ~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
.+.|++.+++.+++.++...++.. ..+...-. ...+.+. .. .-+++.++.++.||..++++|+++|||+
T Consensus 244 ~~~Ii~~a~~~Gi~~~~~~se~~~-~~L~~g~~-----~~~~~~s----~~-~~~s~~ai~~~~DK~~tk~lL~~aGIpV 312 (547)
T TIGR03103 244 ARIIVDEARRRGIEVEVLDAEGGL-FRLSLGGR-----SIRCRES----LS-ELTSAVAMSLCDDKRLTRRLVSEAGLQV 312 (547)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCE-EEecCCce-----EEEEEec----cC-CCCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 388999999999999885433221 11110000 0000011 01 1258899999999999999999999999
Q ss_pred CCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEE-eCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEe
Q 001014 787 PKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEI-VYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALA 865 (1190)
Q Consensus 787 p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~i-v~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~ 865 (1190)
|++..+.+.+++.++++++| |+||||..|++|+||.+ +++.++|.++++.+... ...++||+|+ .|.|+.+.++.
T Consensus 313 P~~~~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~--~~~vlvEe~i-~G~d~Rv~Vig 388 (547)
T TIGR03103 313 PEQQLAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF--CDRVLLERYV-PGEDLRLVVID 388 (547)
T ss_pred CCEEEECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc--CCcEEEEEec-cCCeEEEEEEC
Confidence 99999999999999999998 69999999999999997 99999999999987654 3579999999 89999887663
Q ss_pred cCCCcEEEEeeee--eeeccc-----------------cccccccc------------------cc--------------
Q 001014 866 DSCGNVVIGGIME--HIEQAG-----------------VHSGDSAC------------------MI-------------- 894 (1190)
Q Consensus 866 d~~G~v~~~~i~e--~~~~~g-----------------~~~gd~~~------------------~~-------------- 894 (1190)
+ +++...... ++...| ...+++.. .+
T Consensus 389 g---~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~N 465 (547)
T TIGR03103 389 F---EVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTAN 465 (547)
T ss_pred C---EEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCc
Confidence 2 343322211 100000 00011100 00
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec--CCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHH
Q 001014 895 -----PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT--SGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 895 -----p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~--~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~ 967 (1190)
.+..+++++.+++.++|.++++++|+ .+++||++++. ..+..|||+|.|++=..|- .-|..+-.++.
T Consensus 466 l~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl-~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~-----~~~~~~~~~d~ 539 (547)
T TIGR03103 466 LHTGGTIHDVTEQLHPDLREAAERAARALDI-PVVGIDFLVPDVTGPDYVIIEANERPGLANHE-----PQPTAERFIDL 539 (547)
T ss_pred ccCCCeeEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEeccCCCCCeEEEEecCCccccccC-----CCchHHHHHHH
Confidence 12245567888999999999999998 68999999952 2346899999999876552 34555555554
Q ss_pred H
Q 001014 968 M 968 (1190)
Q Consensus 968 ~ 968 (1190)
+
T Consensus 540 l 540 (547)
T TIGR03103 540 L 540 (547)
T ss_pred h
Confidence 4
No 155
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.64 E-value=8.3e-15 Score=184.32 Aligned_cols=235 Identities=18% Similarity=0.269 Sum_probs=171.1
Q ss_pred cHHHHHHHhhhcCCCcc--------ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHH
Q 001014 706 TVEDVLNVIDLERPEGI--------IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNA 777 (1190)
Q Consensus 706 ~~e~v~~i~~~~~~d~V--------i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~ 777 (1190)
+...+++.+++.+++.. .+.+|. ....++ ..+ .-+++..+++++.||..+++
T Consensus 161 st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~-----~~~~i~----------~~~-----~~~~s~~a~~i~~DK~~tk~ 220 (727)
T PRK14016 161 STAAIVDAAEARGIPYIRLGDGSLVQLGYGK-----YQRRIQ----------AAE-----TDQTSAIAVDIACDKELTKR 220 (727)
T ss_pred CHHHHHHHHHHcCCCEEEeCCCCeEecCCcH-----HHHHHH----------Hhc-----CCCCcHHHHHHhCCHHHHHH
Confidence 45689999999998873 333332 222333 333 34689999999999999999
Q ss_pred HHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEE-eCCHHHHHHHHHHhHhhCCCCcEEEEEecCCc
Q 001014 778 IIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEI-VYTDETLVTYLENAVEVDPERPVLIDKYLSDA 856 (1190)
Q Consensus 778 ~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~i-v~~~~el~~~~~~~~~~~~~~~vliEefI~~g 856 (1190)
+|+++|||+|++..+.+.+++.++++++|||+|+||..+++|+||.+ ++|.+++.++++.+... ...++||+|| .|
T Consensus 221 lL~~~GIPvP~~~~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~--~~~viVEe~I-~G 297 (727)
T PRK14016 221 LLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE--SSDVIVERYI-PG 297 (727)
T ss_pred HHHHCCcCCCCeeEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh--CCeEEEEEec-CC
Confidence 99999999999999999999999999999999999999999999998 99999999999887654 3689999999 79
Q ss_pred ceEEEeEEecCCCcEEEEeeeeeeec----cccc--------------ccc------------------------ccccc
Q 001014 857 IEIDVDALADSCGNVVIGGIMEHIEQ----AGVH--------------SGD------------------------SACMI 894 (1190)
Q Consensus 857 ~E~~v~v~~d~~G~v~~~~i~e~~~~----~g~~--------------~gd------------------------~~~~~ 894 (1190)
.|+.|-++. |+++. +.++... .|.+ -|+ ....+
T Consensus 298 ~d~Rv~Vvg---g~vva--a~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV 372 (727)
T PRK14016 298 KDHRLLVVG---GKLVA--AARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSV 372 (727)
T ss_pred ceEEEEEEC---CEEEE--EEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCcccc
Confidence 999986652 34443 2233221 0100 000 00000
Q ss_pred C-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec------CCCEEEEEEccCCCCCh
Q 001014 895 P-------------------TKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT------SGDVYLLEANPRASRTV 949 (1190)
Q Consensus 895 p-------------------~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~------~g~~~viEiNpR~~~s~ 949 (1190)
| +..+++++.++..+.+.++++.+|+ ++++||++.+. +.+..|+|||..++=..
T Consensus 373 ~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~ 451 (727)
T PRK14016 373 PPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRM 451 (727)
T ss_pred CCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCcccccccCCcEEEEEcCCcchhh
Confidence 1 1234556778889999999999998 89999999831 24678999999887654
Q ss_pred hh-hhcccCCCHHHHHHHHHc
Q 001014 950 PF-VSKAIGHPLAKYAALVMS 969 (1190)
Q Consensus 950 ~~-~~~~~G~~l~~~~~~~~l 969 (1190)
+. -....+.+.....+..+.
T Consensus 452 ~~~p~~g~~r~v~~~Iid~L~ 472 (727)
T PRK14016 452 HLAPSEGKPRNVGEAIVDMLF 472 (727)
T ss_pred ccCCCCCcchhHHHHHHHHhc
Confidence 32 233456666666666543
No 156
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.61 E-value=1.2e-13 Score=155.55 Aligned_cols=239 Identities=17% Similarity=0.245 Sum_probs=162.5
Q ss_pred cccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHH
Q 001014 109 CEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALA 188 (1190)
Q Consensus 109 ~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~ 188 (1190)
.+.++.-..++.++++.|++++.+|.+.. +. ....+|+|+--+-++... ...
T Consensus 32 k~~~~~~~~l~~~~~~~Gi~~v~Id~~~p----------------l~--------~qgpfDvilhK~~~~~~~----~~~ 83 (328)
T PLN02941 32 KVKSFLQPSLEALARSKGIDLVAIDPSRP----------------LS--------EQGPFDVILHKLYGKEWR----QQL 83 (328)
T ss_pred HHHHHhhHHHHHHHHHCCCeEEEecCCCC----------------cc--------ccCCcCEEEEecCCHHHH----HHH
Confidence 33444455688999999999999986631 10 112346666544332211 222
Q ss_pred HhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcC-------CCCCCeeecCCHHHHH---HHHHHcCCCcEEEecCC
Q 001014 189 ESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIG-------VKTPPSGIGNTLDECI---SIANEIGEFPLIIRPAF 258 (1190)
Q Consensus 189 ~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~G-------ipvp~~~~v~s~~e~~---~~~~~ig~~PvVVKP~~ 258 (1190)
.....+..|++++ .++++++.+.||..+.+.|.++| ||+|++..+.+.+.+. .....++ ||+|+||..
T Consensus 84 ~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~-~P~V~KPl~ 161 (328)
T PLN02941 84 EEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLK-FPLVAKPLV 161 (328)
T ss_pred HHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCC-CCEEEeecc
Confidence 2345677899988 89999999999999999999999 9999999999987644 3346799 999999999
Q ss_pred C---CCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEE--EeeeeeCC--CCccc
Q 001014 259 T---LGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-GWKEYELEVMRDLADNVVII--CSIENVDP--MGVHT 330 (1190)
Q Consensus 259 g---~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~--~~~e~~~~--~g~~~ 330 (1190)
| +.|+++.++.++++|... ...+++||||. |...|.|.|+++ .+.++ .+..+... .....
T Consensus 162 g~Gss~gh~m~lv~~~~~L~~l---------~~p~~lQEfVnh~g~d~RVfVvGd---~v~~~~R~S~~n~~~~~~n~~~ 229 (328)
T PLN02941 162 ADGSAKSHKMSLAYDQEGLSKL---------EPPLVLQEFVNHGGVLFKVYVVGD---YVKCVRRFSLPDVSEEELSSAE 229 (328)
T ss_pred cCCCccccceEEecCHHHHHhc---------CCcEEEEEecCCCCEEEEEEEECC---EEEEEEecCCcccccccccccc
Confidence 9 788999999999988761 23799999994 338888888864 32111 11111110 00000
Q ss_pred c----cEEEE-------------ecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCC-CcEEEEEeC--CCC
Q 001014 331 G----DSITV-------------APAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVD-GEVMVIEMN--PRV 390 (1190)
Q Consensus 331 g----~~~~~-------------~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~-g~~~viEiN--pR~ 390 (1190)
| ..+.- .|.. ..-.....+.++|.++.++||+ ++++||++.++++ ++++||||| |.+
T Consensus 230 G~~~f~~vs~~~~~~~~~~~~~~~~~~-~~~p~~~~l~~La~~~r~alGl--~l~GvDvI~~~~~~~~~~VidVN~fP~~ 306 (328)
T PLN02941 230 GVLPFPRVSNAAASADDADNGGLDPEV-AELPPRPFLEDLARELRRRLGL--RLFNFDMIREHGTGDRYYVIDINYFPGY 306 (328)
T ss_pred ccccccccccccccccccccccccccc-ccCCChHHHHHHHHHHHHHhCC--ceEEEEEEeecCCCCceEEEEecCCCcc
Confidence 1 00000 0000 1111234689999999999999 8999999999633 479999999 555
Q ss_pred CC
Q 001014 391 SR 392 (1190)
Q Consensus 391 ~g 392 (1190)
.+
T Consensus 307 k~ 308 (328)
T PLN02941 307 AK 308 (328)
T ss_pred cc
Confidence 54
No 157
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=150.29 Aligned_cols=188 Identities=21% Similarity=0.237 Sum_probs=138.2
Q ss_pred hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCC
Q 001014 191 GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYN 270 (1190)
Q Consensus 191 ~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~ 270 (1190)
.+.+++ +..+|+++++++.|.||.++.+.|+.. +++|++.... +.+ --.|+||++|.||.|+.+..+
T Consensus 93 ri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~----------~~~-~k~ViKp~dgCgge~i~~~~~ 159 (307)
T COG1821 93 RIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWA----------EEP-KKYVIKPADGCGGEGILFGRD 159 (307)
T ss_pred HHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccccc----------cCC-ceEEecccccCCcceeeccCC
Confidence 456666 788899999999999999999999999 9999987422 234 568999999999999998887
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHH
Q 001014 271 KEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRL 350 (1190)
Q Consensus 271 ~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l 350 (1190)
..++ .|+||||+| .+.||. +.++........+.|.+-..+. +-.....+++ .+.+..+++
T Consensus 160 ~pd~---------------~i~qEfIeG-~~lSVS-L~~GEkv~pLsvNrQfi~~~~~--~~~y~gg~~p-i~he~k~~~ 219 (307)
T COG1821 160 FPDI---------------EIAQEFIEG-EHLSVS-LSVGEKVLPLSVNRQFIIFAGS--ELVYNGGRTP-IDHELKREA 219 (307)
T ss_pred Ccch---------------hhHHHhcCC-cceEEE-EecCCccccceechhhhhhccc--eeeeccCcCC-CCcHHHHHH
Confidence 6652 688999999 999999 4433221222223332211111 1111123444 677899999
Q ss_pred HHHHHHHHHHhC-CccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcC
Q 001014 351 RDYSIAIIREIG-VECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVG 415 (1190)
Q Consensus 351 ~~~a~~i~~~lg-~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG 415 (1190)
.+.|.++++.++ + +|+.+||+.+. ++||+||||||++-...-.+++++-++.+..++-..|
T Consensus 220 ~~~Ai~aVeci~Gl-~GYVGVDlVls---D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g 281 (307)
T COG1821 220 FEEAIRAVECIPGL-NGYVGVDLVLS---DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTG 281 (307)
T ss_pred HHHHHHHHHhhccc-cceeeEEEEec---CCcEEEEecCCCCcceeeeeccccHHHHHHHhcCccc
Confidence 999999999996 7 69999999996 5799999999999865444666776777665554444
No 158
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.61 E-value=6.1e-14 Score=175.47 Aligned_cols=181 Identities=19% Similarity=0.281 Sum_probs=135.6
Q ss_pred cHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc-CCCcEEEecCCCCCCcceEEe---CCHHHHHHHHH
Q 001014 204 KLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI-GEFPLIIRPAFTLGGTGGGIA---YNKEEFEAICK 279 (1190)
Q Consensus 204 ~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i-g~~PvVVKP~~g~gg~Gv~iv---~~~~el~~~~~ 279 (1190)
+..+...++||..++++|+++|||+|++..+.+.+++.+....+ | ||+||||..+++|.||.++ .+.+++.+++.
T Consensus 479 s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g-~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~ 557 (752)
T PRK02471 479 NYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFAD-KAIVVKPKSTNFGLGISIFKEPASLEDYEKALE 557 (752)
T ss_pred HHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcC-CCEEEEECCCCCcCCeEEecCcCCHHHHHHHHH
Confidence 45567888999999999999999999999999998888777664 7 9999999999999999985 57899999998
Q ss_pred HHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEee-------------------eeeCCC-C------------
Q 001014 280 AGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSI-------------------ENVDPM-G------------ 327 (1190)
Q Consensus 280 ~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~-------------------e~~~~~-g------------ 327 (1190)
.++.. ...++|||||+| +||+|.++. |.++...-. ++.+|. |
T Consensus 558 ~a~~~--~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~ 631 (752)
T PRK02471 558 IAFRE--DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQL 631 (752)
T ss_pred HHHhc--CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccccccccc
Confidence 87765 457999999999 999998873 344433111 111110 0
Q ss_pred ------------------cccccEEEEec---------CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCC--
Q 001014 328 ------------------VHTGDSITVAP---------AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVD-- 378 (1190)
Q Consensus 328 ------------------~~~g~~~~~~P---------a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~-- 378 (1190)
+..|..+.... +..+++...+...+.|.++++++|+ .+++||++...-+
T Consensus 632 d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl--~~~GvDii~~di~~p 709 (752)
T PRK02471 632 GEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGA--KICGVDLIIPDLTQP 709 (752)
T ss_pred CHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCC--CEEEEEEEeCCCccc
Confidence 01122222211 1136778888999999999999998 5889999986311
Q ss_pred ---C--cEEEEEeCCCCCCc
Q 001014 379 ---G--EVMVIEMNPRVSRS 393 (1190)
Q Consensus 379 ---g--~~~viEiNpR~~gs 393 (1190)
. +..|||+|++++=.
T Consensus 710 ~~~~~~~~~IiEvN~~P~l~ 729 (752)
T PRK02471 710 ASPEHPNYGIIELNFNPAMY 729 (752)
T ss_pred ccccCCCeEEEEecCCCchh
Confidence 2 67899999887753
No 159
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.61 E-value=6.9e-15 Score=151.86 Aligned_cols=182 Identities=16% Similarity=0.211 Sum_probs=139.6
Q ss_pred eEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHH
Q 001014 756 VRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYL 835 (1190)
Q Consensus 756 i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~ 835 (1190)
+..+|+|+++++.|.||+++.+.|+.. +++|++.... +.+--.|+||.++.||.|+.+..+..++
T Consensus 99 ~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~----------~~~~k~ViKp~dgCgge~i~~~~~~pd~---- 163 (307)
T COG1821 99 VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWA----------EEPKKYVIKPADGCGGEGILFGRDFPDI---- 163 (307)
T ss_pred hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccccc----------cCCceEEecccccCCcceeeccCCCcch----
Confidence 456889999999999999999999999 9999986421 2344589999999999999988776553
Q ss_pred HHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeeccccccccccccc--CCCCCCHHHHHHHHHHHHH
Q 001014 836 ENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMI--PTKTISSSCLDTISSWTIK 913 (1190)
Q Consensus 836 ~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~--p~~~l~~~~~~~i~~~a~~ 913 (1190)
.++|+|| .|..++|. +.+|+ .+....+-++.- -.+.+...+ -+..++.+..+++.+.|.+
T Consensus 164 -----------~i~qEfI-eG~~lSVS-L~~GE-kv~pLsvNrQfi----~~~~~~~~y~gg~~pi~he~k~~~~~~Ai~ 225 (307)
T COG1821 164 -----------EIAQEFI-EGEHLSVS-LSVGE-KVLPLSVNRQFI----IFAGSELVYNGGRTPIDHELKREAFEEAIR 225 (307)
T ss_pred -----------hhHHHhc-CCcceEEE-EecCC-ccccceechhhh----hhccceeeeccCcCCCCcHHHHHHHHHHHH
Confidence 5789999 99999999 66655 555555544421 111111111 1124667899999999999
Q ss_pred HHHHcC-CCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCC
Q 001014 914 LAKRLN-VCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKS 972 (1190)
Q Consensus 914 i~~~Lg-~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~ 972 (1190)
.++.++ +.|.+++|+++ . +++||||||||+.-..--.+.+++-++.++.++-..|+-
T Consensus 226 aVeci~Gl~GYVGVDlVl-s-D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~ 283 (307)
T COG1821 226 AVECIPGLNGYVGVDLVL-S-DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKV 283 (307)
T ss_pred HHHhhccccceeeEEEEe-c-CCcEEEEecCCCCcceeeeeccccHHHHHHHhcCccccc
Confidence 999995 88999999999 4 899999999999887555577888888887776655543
No 160
>PRK12458 glutathione synthetase; Provisional
Probab=99.61 E-value=9.3e-14 Score=159.87 Aligned_cols=280 Identities=16% Similarity=0.148 Sum_probs=173.3
Q ss_pred chhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcc--eeec-----CCcHHHHHHH-------hhhcCCCccccccCC
Q 001014 663 DYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDR--LYFE-----PLTVEDVLNV-------IDLERPEGIIVQFGG 728 (1190)
Q Consensus 663 d~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~--~~~~-----p~~~e~v~~i-------~~~~~~d~Vi~~~g~ 728 (1190)
.|++..++++++++|+++.+++++.-....+...+.. +... +......... +....+|+|++-.+.
T Consensus 10 ~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~~ 89 (338)
T PRK12458 10 TDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRANP 89 (338)
T ss_pred CchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCCC
Confidence 4778899999999999999998764332211100000 0000 1111111111 112357788764332
Q ss_pred chhhhhhhhHHhhhccC-----CCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHH
Q 001014 729 QTPLKLSLPIHQYLDEH-----RLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAK 803 (1190)
Q Consensus 729 ~~~~~la~~l~~~l~~~-----~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~ 803 (1190)
........ |+..- ..++..| ++++ ++++++..+.||..+..+++ +++|++.+..+.+++.++.+
T Consensus 90 ~~~~~~~~----~l~~~~~~~~~~~e~~g---~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~ 158 (338)
T PRK12458 90 PLDPLARN----WADSVGIAFGRLAARDG---VLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLE 158 (338)
T ss_pred CCChHHHH----HHHHhchhHHHHHHhCC---CeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHH
Confidence 21111111 11100 1111567 7766 69999999999999987665 68999999999999999999
Q ss_pred HhCCc-EEEecCcCCCCcceEEeCCHHH--HHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEE----EEee
Q 001014 804 EIGYP-VVVRPSYVLGGRAMEIVYTDET--LVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVV----IGGI 876 (1190)
Q Consensus 804 ~igyP-vvvKP~~~~gg~Gv~iv~~~~e--l~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~----~~~i 876 (1190)
+.++| +|+||..|.||+|+.++.+.++ +...++.... ..++++|+||++..+.++.++.- +|+++ ..+.
T Consensus 159 ~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~---~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~g~~~a 234 (338)
T PRK12458 159 ESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG---DGYVIAQEYLPGAEEGDVRILLL-NGEPLERDGHYAA 234 (338)
T ss_pred HcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh---CCCEEEEEcccCCCCCCEEEEEE-CCEEEeeccceeE
Confidence 98765 9999999999999999987664 5555543222 45899999996434444444432 24554 0122
Q ss_pred eeeee-----cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHc---CCCcceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 877 MEHIE-----QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRL---NVCGLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 877 ~e~~~-----~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~L---g~~G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
+.+.. ..+.+.|... .+..+++ +.+++|.+++..| |+ .+++||++- .+|+|||++..+.
T Consensus 235 ~~R~~~~~d~RsN~~~Gg~~---~~~~l~~----~~~~ia~~~~~~l~~~GL-~~~gVDli~-----~~l~EIN~~sp~g 301 (338)
T PRK12458 235 MRRVPAGGDVRSNVHAGGSV---VKHTLTK----EELELCEAIRPKLVRDGL-FFVGLDIVG-----DKLVEVNVFSPGG 301 (338)
T ss_pred EEEecCCCCeeecccCCCcc---cCcCCCH----HHHHHHHHHHHHHhhcCC-eEEeEEEEC-----CEEEEEeCCCcch
Confidence 22221 1223433322 2224554 4556666666665 44 478899873 2689999997777
Q ss_pred hhhhhcccCCCHHHHHHHHHcC
Q 001014 949 VPFVSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 949 ~~~~~~~~G~~l~~~~~~~~lG 970 (1190)
.+-+...+|+|+++..++.+.-
T Consensus 302 ~~~~~~~~g~d~a~~i~~~i~~ 323 (338)
T PRK12458 302 LTRINKLNKIDFVEDIIEALER 323 (338)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 7666888999999999987643
No 161
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.59 E-value=1e-13 Score=173.58 Aligned_cols=197 Identities=21% Similarity=0.215 Sum_probs=143.9
Q ss_pred CHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHH-hCCcEEEecCcCCCCcceEEe---CCHHHHHHHHHH
Q 001014 762 SPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKE-IGYPVVVRPSYVLGGRAMEIV---YTDETLVTYLEN 837 (1190)
Q Consensus 762 ~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~-igyPvvvKP~~~~gg~Gv~iv---~~~~el~~~~~~ 837 (1190)
+..+..++.||..++++|+++|||+|++..+.+.+++.+.... .|||+||||..+++|+||.++ .+.+++.+++..
T Consensus 479 s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~ 558 (752)
T PRK02471 479 NYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEI 558 (752)
T ss_pred HHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 5556788899999999999999999999999999998877776 489999999999999999986 468899898887
Q ss_pred hHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeee----ccccc---------------------------
Q 001014 838 AVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIE----QAGVH--------------------------- 886 (1190)
Q Consensus 838 ~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~----~~g~~--------------------------- 886 (1190)
++.. ...++||||| .|+|++|.++ + |+++. +++... ..|.+
T Consensus 559 a~~~--~~~vlVEEfI-~G~E~Rv~Vi-g--gkvva--a~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~ 630 (752)
T PRK02471 559 AFRE--DSSVLVEEFI-VGTEYRFFVL-D--GKVEA--VLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQ 630 (752)
T ss_pred HHhc--CCcEEEEecc-cCCEEEEEEE-C--CEEEE--EEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccc
Confidence 6643 4579999999 8999999877 3 23322 222110 00100
Q ss_pred ccc-----------ccccc-------------------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec----
Q 001014 887 SGD-----------SACMI-------------------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT---- 932 (1190)
Q Consensus 887 ~gd-----------~~~~~-------------------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~---- 932 (1190)
.++ ...++ -+..+++.+.+...++|.++++++|+. +++||+++..
T Consensus 631 ~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p 709 (752)
T PRK02471 631 LGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQP 709 (752)
T ss_pred cCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCccc
Confidence 000 00000 122466788899999999999999985 8889999841
Q ss_pred --CC--CEEEEEEccCCCCChh-hhhcccCCCHHHHHHHH
Q 001014 933 --SG--DVYLLEANPRASRTVP-FVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 933 --~g--~~~viEiNpR~~~s~~-~~~~~~G~~l~~~~~~~ 967 (1190)
.. +..|||+|++++-..| +=.+....|+.+-.++.
T Consensus 710 ~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~ 749 (752)
T PRK02471 710 ASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILDK 749 (752)
T ss_pred ccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHHH
Confidence 12 6788999999988543 33344455666666554
No 162
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.59 E-value=2e-13 Score=155.88 Aligned_cols=276 Identities=13% Similarity=0.123 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCC-HH-H--HH--HHHHHcCCCEEEecCCChhHHHHHHH
Q 001014 113 YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMT-PE-L--VE--QVLEKERPDALLPTMGGQTALNLAVA 186 (1190)
Q Consensus 113 ~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~-~~-~--v~--~i~~~~~~d~Vip~~~g~~~~~~~~~ 186 (1190)
+|...++.+++++|+++.+++++.-........+....+...+ .. . .. ..+.-..+|+|++-.+..........
T Consensus 18 ~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~ 97 (312)
T TIGR01380 18 DTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYA 97 (312)
T ss_pred ChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHH
Confidence 6899999999999999999987755433222222111111100 00 0 00 11112358999976543332221111
Q ss_pred HHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceE
Q 001014 187 LAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGG 266 (1190)
Q Consensus 187 l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~ 266 (1190)
..-...++..|++++ +++.+++.+.||..+.+++. ++|++....+.+++.++.++.| |+|+||..|++|+|+.
T Consensus 98 ~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~~~~~~~~~~g--~vVvKPl~G~~G~gv~ 170 (312)
T TIGR01380 98 TYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKAEIRAFLAEHG--DIVLKPLDGMGGEGIF 170 (312)
T ss_pred HHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHHHHHHHHHHcC--CEEEEECCCCCCceEE
Confidence 111335777898887 89999999999999887653 7999998889999999999888 8999999999999999
Q ss_pred EeCCH-HHHHHHHHHHHhcCCCCcEEEeeecCCC--eeeeEEEEEeCCCcEEEEEeeeeeCC-----CCcccccEEEEec
Q 001014 267 IAYNK-EEFEAICKAGLAASLTSQVLVEKSLLGW--KEYELEVMRDLADNVVIICSIENVDP-----MGVHTGDSITVAP 338 (1190)
Q Consensus 267 iv~~~-~el~~~~~~~~~~~~~~~vlVEe~I~G~--~E~sv~v~~d~~g~~~~~~~~e~~~~-----~g~~~g~~~~~~P 338 (1190)
++.+. .++...++.. .......+++|+||+.. .++.+.++. |+++..+ +.+... ..++.|.. ..|
T Consensus 171 ~v~~~~~~~~~~~~~~-~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~a-i~R~~~~gd~r~N~~~Gg~--~~~ 243 (312)
T TIGR01380 171 RLDPGDPNFNSILETM-TQRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAA-VARIPAGGEFRGNLAVGGR--GEA 243 (312)
T ss_pred EEcCCCccHHHHHHHH-HhccCCcEEEEeccccccCCCEEEEEEC---CeEEEEE-EEecCCCCCccccccCCce--eec
Confidence 88753 3343333322 22223579999999832 577777663 4444322 222211 12333432 334
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCC-CCCchHHHHHHhCCCHHHHHHHHH
Q 001014 339 AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPR-VSRSSALASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 339 a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR-~~gs~~l~~~atG~~l~~~~~~~a 413 (1190)
.. +++++. ++...+...++++|+ .+++||++ +.+|+|||+- +++.. -...+||.|++...++..
T Consensus 244 ~~-l~~e~~-~ia~~~~~~~~~~gl--~~agVDii------g~~v~EvN~~~p~~~~-~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 244 TE-LSERDR-EICADVAPELKRRGL--LFVGIDVI------GGYLTEVNVTSPTGIR-EIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred cC-CCHHHH-HHHHHHHHHHHhcCC--cEEEEEEe------CCEEEEEecCCcchHH-HHHhhhCCCHHHHHHHHH
Confidence 43 666542 333444444567788 79999998 1469999975 33322 246779999999988754
No 163
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.58 E-value=1e-13 Score=170.26 Aligned_cols=200 Identities=19% Similarity=0.182 Sum_probs=146.1
Q ss_pred CCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh-CCcEEEecCcCCCCcceEEeCC---HHHHHHHHH
Q 001014 761 TSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI-GYPVVVRPSYVLGGRAMEIVYT---DETLVTYLE 836 (1190)
Q Consensus 761 ~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i-gyPvvvKP~~~~gg~Gv~iv~~---~~el~~~~~ 836 (1190)
++..+..++.||..++++|+++|||+|++..+.+.+++.+....+ +||+||||..+++|+||.++.+ .+++.+++.
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~ 544 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALN 544 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHH
Confidence 577889999999999999999999999999999988887777776 6999999999999999999876 788988888
Q ss_pred HhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeee--eeeeccccc--------------------------cc
Q 001014 837 NAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIM--EHIEQAGVH--------------------------SG 888 (1190)
Q Consensus 837 ~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~--e~~~~~g~~--------------------------~g 888 (1190)
.++.. +..++||+|| .|+|++|.|+.+ +++...-. .++...|.| .+
T Consensus 545 ~A~~~--~~~VLVEefI-~G~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~ 618 (737)
T TIGR01435 545 IAFSE--DSSVIIEEFL-PGTEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITG 618 (737)
T ss_pred HHHhc--CCeEEEEecc-cCCEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccc
Confidence 77654 4579999999 899999988854 33222100 011000100 00
Q ss_pred c-----------ccccc-------------------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecC-----
Q 001014 889 D-----------SACMI-------------------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTS----- 933 (1190)
Q Consensus 889 d-----------~~~~~-------------------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~----- 933 (1190)
| +.-++ -+..+++++.+..+++|.++++++|+. +++||+++..-
T Consensus 619 d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~ 697 (737)
T TIGR01435 619 PEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDT 697 (737)
T ss_pred hHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCcc
Confidence 0 00011 123566788899999999999999996 99999998410
Q ss_pred ---CCEEEEEEccCCCCChh-hhhcccCCCHHHHHHHH
Q 001014 934 ---GDVYLLEANPRASRTVP-FVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 934 ---g~~~viEiNpR~~~s~~-~~~~~~G~~l~~~~~~~ 967 (1190)
....|||+|++|+-..| +=.+..+.++..-.+..
T Consensus 698 ~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 698 DKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred ccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 12568999999988643 33344555666655543
No 164
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.56 E-value=1.7e-13 Score=168.31 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=135.8
Q ss_pred cHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc-CCCcEEEecCCCCCCcceEEeCC---HHHHHHHHH
Q 001014 204 KLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI-GEFPLIIRPAFTLGGTGGGIAYN---KEEFEAICK 279 (1190)
Q Consensus 204 ~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i-g~~PvVVKP~~g~gg~Gv~iv~~---~~el~~~~~ 279 (1190)
+..+..++.||..+|++|+++|||||++..+.+.+++.+....+ + ||+||||..+++|.||.++.+ .+++.+++.
T Consensus 466 S~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g-~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~ 544 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFEN-KAIVVKPKSTNYGLGITIFKNGFTLEDFQEALN 544 (737)
T ss_pred cHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcC-CCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHH
Confidence 55678999999999999999999999999999988877766666 6 999999999999999999876 789999998
Q ss_pred HHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEee-------------------eeeCCC-Cc-----------
Q 001014 280 AGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSI-------------------ENVDPM-GV----------- 328 (1190)
Q Consensus 280 ~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~-------------------e~~~~~-g~----------- 328 (1190)
.++.. +..+|||+||+| +||++.|+.+ .++.+.-. ++.+|. |.
T Consensus 545 ~A~~~--~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~ 618 (737)
T TIGR01435 545 IAFSE--DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITG 618 (737)
T ss_pred HHHhc--CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccc
Confidence 87765 458999999999 9999998853 34433111 122210 00
Q ss_pred ------------------ccccEEEEec---------CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecC----
Q 001014 329 ------------------HTGDSITVAP---------AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPV---- 377 (1190)
Q Consensus 329 ------------------~~g~~~~~~P---------a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~---- 377 (1190)
..|..+.... +..++++......+.|.++++++|+ -+|+||+++..-
T Consensus 619 d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl--~i~GVDii~~di~~p~ 696 (737)
T TIGR01435 619 PEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGA--AICGVDLIIPDETIPD 696 (737)
T ss_pred hHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCC--CEEEEEEEecCCCCCc
Confidence 0011111100 1136778888999999999999999 499999998521
Q ss_pred ---CCcEEEEEeCCCCCCc
Q 001014 378 ---DGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 378 ---~g~~~viEiNpR~~gs 393 (1190)
...+.|||+|++++=.
T Consensus 697 ~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 697 TDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred cccccceEEEEEcCCcchh
Confidence 1236799999887643
No 165
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.55 E-value=5.2e-13 Score=150.52 Aligned_cols=230 Identities=15% Similarity=0.273 Sum_probs=153.7
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCC
Q 001014 667 CHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHR 746 (1190)
Q Consensus 667 ~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~ 746 (1190)
...+.++++.|++++.+|.+-. +. ....+|.|+--.-++. .-..+++|+.+
T Consensus 39 ~~l~~~~~~~Gi~~v~Id~~~p-------l~-----------------~qgpfDvilhK~~~~~---~~~~~~~~~~e-- 89 (328)
T PLN02941 39 PSLEALARSKGIDLVAIDPSRP-------LS-----------------EQGPFDVILHKLYGKE---WRQQLEEYREK-- 89 (328)
T ss_pred HHHHHHHHHCCCeEEEecCCCC-------cc-----------------ccCCcCEEEEecCCHH---HHHHHHHHHHH--
Confidence 3457889999999999987620 10 0112344432222221 01122222222
Q ss_pred CcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC-------CCCCCceeecCHHHHH---HHHHHhCCcEEEecCcC
Q 001014 747 LPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS-------IEQPKGGIAKSEADAL---AIAKEIGYPVVVRPSYV 816 (1190)
Q Consensus 747 ~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g-------Ip~p~~~~~~s~~e~~---~~~~~igyPvvvKP~~~ 816 (1190)
..| ++++ .++++++.+.||..+...|.++| ||+|++.++.+.+.+. .....++||+|+||..+
T Consensus 90 ---~pg---v~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g 162 (328)
T PLN02941 90 ---HPD---VTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVA 162 (328)
T ss_pred ---CCC---cEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeeccc
Confidence 667 8887 48999999999999999999999 9999999999987644 34467999999999999
Q ss_pred ---CCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC-CcceEEEeEEecCCCcEEEEeeeeeee-c-----cccc
Q 001014 817 ---LGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS-DAIEIDVDALADSCGNVVIGGIMEHIE-Q-----AGVH 886 (1190)
Q Consensus 817 ---~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~-~g~E~~v~v~~d~~G~v~~~~i~e~~~-~-----~g~~ 886 (1190)
..|++|.++.+++.|... ..|+++||||+ +|+.+-|-+++| ++ ..+...-. . ....
T Consensus 163 ~Gss~gh~m~lv~~~~~L~~l---------~~p~~lQEfVnh~g~d~RVfVvGd---~v--~~~~R~S~~n~~~~~~n~~ 228 (328)
T PLN02941 163 DGSAKSHKMSLAYDQEGLSKL---------EPPLVLQEFVNHGGVLFKVYVVGD---YV--KCVRRFSLPDVSEEELSSA 228 (328)
T ss_pred CCCccccceEEecCHHHHHhc---------CCcEEEEEecCCCCEEEEEEEECC---EE--EEEEecCCccccccccccc
Confidence 889999999999988751 34799999994 467788877766 22 22221100 0 0011
Q ss_pred cc----ccccccC------------CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecC--CCEEEEEEccCCCC
Q 001014 887 SG----DSACMIP------------TKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTS--GDVYLLEANPRASR 947 (1190)
Q Consensus 887 ~g----d~~~~~p------------~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~--g~~~viEiNpR~~~ 947 (1190)
.| +.....+ +........+++.+++.++.++||. ++++||++.+.+ ++++|||||.-++-
T Consensus 229 ~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN~fP~~ 306 (328)
T PLN02941 229 EGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDINYFPGY 306 (328)
T ss_pred ccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEecCCCcc
Confidence 11 0000000 0001111235689999999999998 899999999742 57999999998764
No 166
>PRK05246 glutathione synthetase; Provisional
Probab=99.55 E-value=6.8e-13 Score=152.19 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE--ECCCCHHHHH----HHHHHcCCCEEEecCCChhHHHHHHH
Q 001014 113 YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY--ITPMTPELVE----QVLEKERPDALLPTMGGQTALNLAVA 186 (1190)
Q Consensus 113 ~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~--i~p~~~~~v~----~i~~~~~~d~Vip~~~g~~~~~~~~~ 186 (1190)
+|...++++++++|+++.+++++.-......-.+.... +.+....... ..+.-..+|+|++-.+..........
T Consensus 19 ~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~ 98 (316)
T PRK05246 19 DSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIYA 98 (316)
T ss_pred ChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHHHH
Confidence 78889999999999999999876543322211111000 1110000000 00111248999976543332211110
Q ss_pred HHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceE
Q 001014 187 LAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGG 266 (1190)
Q Consensus 187 l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~ 266 (1190)
..-...++..|++++ ++++++..+.||..+.+++. ++|++....+.+++.++.++.+ |+|+||..|++|+|+.
T Consensus 99 ~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~~~~~~~~~~~~--~vVlKP~~G~~G~gV~ 171 (316)
T PRK05246 99 TYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVTRDKAEIRAFRAEHG--DIILKPLDGMGGAGIF 171 (316)
T ss_pred HHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEeCCHHHHHHHHHHCC--CEEEEECCCCCccceE
Confidence 111234676788888 79999999999999988755 7899999999999999998888 9999999999999999
Q ss_pred EeCC-HHHHHHHHHHHHhcCCCCcEEEeeecCCC--eeeeEEEEEeCCCcEEEEEeeeeeCC-----CCcccccEEEEec
Q 001014 267 IAYN-KEEFEAICKAGLAASLTSQVLVEKSLLGW--KEYELEVMRDLADNVVIICSIENVDP-----MGVHTGDSITVAP 338 (1190)
Q Consensus 267 iv~~-~~el~~~~~~~~~~~~~~~vlVEe~I~G~--~E~sv~v~~d~~g~~~~~~~~e~~~~-----~g~~~g~~~~~~P 338 (1190)
++.. ..++....+.... .....+++|+||+.. .++.+.++ +|+++.. .+.+... ..++.|.. ..|
T Consensus 172 ~i~~~~~~~~~~~~~l~~-~~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~-a~~R~~~~~~~rtN~~~Gg~--~~~ 244 (316)
T PRK05246 172 RVKADDPNLGSILETLTE-HGREPVMAQRYLPEIKEGDKRILLV---DGEPVGY-ALARIPAGGETRGNLAAGGR--GEA 244 (316)
T ss_pred EEeCCCccHHHHHHHHHH-ccCCeEEEEeccccCCCCCEEEEEE---CCEEhhh-eeEecCCCCCcccCccCCce--Eec
Confidence 9844 4444443333222 224589999999762 46666665 3444331 2333321 13344443 334
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHc
Q 001014 339 AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSV 414 (1190)
Q Consensus 339 a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~al 414 (1190)
.. +++++ .++...+.+.++.+|+ .+++||++- . ||+|||+.-.+...-.+.+||+|++...++...
T Consensus 245 ~~-l~~~~-~~ia~~~~~~l~~~gl--~~~GVDli~-----~-~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 245 TP-LTERD-REICAAIGPELKERGL--IFVGIDVIG-----D-YLTEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred cC-CCHHH-HHHHHHHHHHHHHhCC--CEEEEEEeC-----C-EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 43 66543 3333334444466777 689999972 2 699999763333556688899999999988653
No 167
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.52 E-value=4.3e-13 Score=172.14 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=151.0
Q ss_pred CcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEE-eCCHHHHHHHHHHH
Q 001014 203 AKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI-AYNKEEFEAICKAG 281 (1190)
Q Consensus 203 ~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~i-v~~~~el~~~~~~~ 281 (1190)
++..+++++.||..++++|+++|||+|++..+.+.+++.++++++| ||+||||..+.+|+|+.+ +++.+|+.++++.+
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig-~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a 281 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLG-YPVVIKPYDGNHGRGVTINILTRDEIESAYEAA 281 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC-CCEEEEECCCCCccCEEEEeCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999 999999999999999998 99999999999988
Q ss_pred HhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEee-------------------eeeCCC-C--------------
Q 001014 282 LAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSI-------------------ENVDPM-G-------------- 327 (1190)
Q Consensus 282 ~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~-------------------e~~~~~-g-------------- 327 (1190)
... ...+|||+||+| +||++.++. |+++...-. .|.+|. |
T Consensus 282 ~~~--~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~ 355 (864)
T TIGR02068 282 VEE--SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDS 355 (864)
T ss_pred Hhh--CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCH
Confidence 765 358999999999 999997763 444443111 011221 0
Q ss_pred ----------------cccccEEEEec---------CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec-----C
Q 001014 328 ----------------VHTGDSITVAP---------AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP-----V 377 (1190)
Q Consensus 328 ----------------~~~g~~~~~~P---------a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~-----~ 377 (1190)
+..|..+.... +...+++...+..+.|.++++++|+ .++.||++... +
T Consensus 356 ~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl--~i~gvD~i~~di~~~~~ 433 (864)
T TIGR02068 356 TARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGL--DIAGVDIVTEDISRPLR 433 (864)
T ss_pred HHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCC--CeEEEEEEecCCCCCcc
Confidence 00122222211 1125677778889999999999999 69999998852 1
Q ss_pred CCcEEEEEeCCCCCCchHH-HHHHhCCCHHHHHHHHH
Q 001014 378 DGEVMVIEMNPRVSRSSAL-ASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 378 ~g~~~viEiNpR~~gs~~l-~~~atG~~l~~~~~~~a 413 (1190)
..+..+||+|+.++=..++ -..-.+.++....+...
T Consensus 434 ~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~l 470 (864)
T TIGR02068 434 DTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDML 470 (864)
T ss_pred ccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHh
Confidence 2346899999877654322 23334666666666654
No 168
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.51 E-value=7.7e-13 Score=151.13 Aligned_cols=269 Identities=15% Similarity=0.139 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHH-----HHhhhcCCCccccccCCch------h
Q 001014 664 YCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVL-----NVIDLERPEGIIVQFGGQT------P 731 (1190)
Q Consensus 664 ~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~-----~i~~~~~~d~Vi~~~g~~~------~ 731 (1190)
|++..++++++++|+++.+++.+.-........+....+.. .....+. .......+|+|++-.+... .
T Consensus 18 ~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~ 97 (312)
T TIGR01380 18 DTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYA 97 (312)
T ss_pred ChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHH
Confidence 56888999999999999999876443322210110000000 0000000 1112235788886544321 1
Q ss_pred hhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEE
Q 001014 732 LKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVV 811 (1190)
Q Consensus 732 ~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvv 811 (1190)
..+...++ ..| ++++ ++++++..+.||..+.+++. ++|++....+.+++.++.++.| |+|+
T Consensus 98 ~~~l~~le----------~~g---~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~~~~~~~~~~g-~vVv 158 (312)
T TIGR01380 98 TYLLELAD----------PTG---TLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKAEIRAFLAEHG-DIVL 158 (312)
T ss_pred HHHHHHHH----------hCC---CeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHHHHHHHHHHcC-CEEE
Confidence 24555565 778 8877 58999999999999887753 7999998889999999999988 9999
Q ss_pred ecCcCCCCcceEEeCC-HHHHHHHHHHhHhhCCCCcEEEEEecCC--cceEEEeEEecCCCcEEEEeeeeee----eccc
Q 001014 812 RPSYVLGGRAMEIVYT-DETLVTYLENAVEVDPERPVLIDKYLSD--AIEIDVDALADSCGNVVIGGIMEHI----EQAG 884 (1190)
Q Consensus 812 KP~~~~gg~Gv~iv~~-~~el~~~~~~~~~~~~~~~vliEefI~~--g~E~~v~v~~d~~G~v~~~~i~e~~----~~~g 884 (1190)
||..|.+|+|+.++.+ ..++...++. .......++++|+||+. +.++.|.++. |+++..++...- ....
T Consensus 159 KPl~G~~G~gv~~v~~~~~~~~~~~~~-~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N 234 (312)
T TIGR01380 159 KPLDGMGGEGIFRLDPGDPNFNSILET-MTQRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGN 234 (312)
T ss_pred EECCCCCCceEEEEcCCCccHHHHHHH-HHhccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCcccc
Confidence 9999999999999875 3334333332 22223468999999963 4677776653 455443443221 1223
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHH---HHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHH
Q 001014 885 VHSGDSACMIPTKTISSSCLDTISSWTIKLA---KRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLA 961 (1190)
Q Consensus 885 ~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~---~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~ 961 (1190)
++.|...... .++++ .++++.+++ +.+|+ .+.+||++- .||+|||+--...+.-+..++|+|++
T Consensus 235 ~~~Gg~~~~~---~l~~e----~~~ia~~~~~~~~~~gl-~~agVDiig-----~~v~EvN~~~p~~~~~~~~~~g~~ia 301 (312)
T TIGR01380 235 LAVGGRGEAT---ELSER----DREICADVAPELKRRGL-LFVGIDVIG-----GYLTEVNVTSPTGIREIDRQKGVNIA 301 (312)
T ss_pred ccCCceeecc---CCCHH----HHHHHHHHHHHHHhcCC-cEEEEEEeC-----CEEEEEecCCcchHHHHHhhhCCCHH
Confidence 4444332222 45553 345555555 55555 578899882 47999998633223224778999999
Q ss_pred HHHHHHH
Q 001014 962 KYAALVM 968 (1190)
Q Consensus 962 ~~~~~~~ 968 (1190)
+..++.+
T Consensus 302 ~~i~d~l 308 (312)
T TIGR01380 302 GMLWDAI 308 (312)
T ss_pred HHHHHHH
Confidence 9988765
No 169
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.49 E-value=8.2e-13 Score=169.60 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=153.0
Q ss_pred CCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEE-eCCHHHHHHHHHHhH
Q 001014 761 TSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEI-VYTDETLVTYLENAV 839 (1190)
Q Consensus 761 ~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~i-v~~~~el~~~~~~~~ 839 (1190)
++..+++++.||..++++|+++|||+|++..+.+.+++.++++++|||+||||..+.+|+||.+ +.+.+++.++++.+.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~ 282 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAV 282 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999998 999999999999876
Q ss_pred hhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEee--eeeeeccccc--------------ccc--------------
Q 001014 840 EVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI--MEHIEQAGVH--------------SGD-------------- 889 (1190)
Q Consensus 840 ~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i--~e~~~~~g~~--------------~gd-------------- 889 (1190)
.. ...++||+|| .|+|+.+.++. |+++...- ..++...|.| -|+
T Consensus 283 ~~--~~~vlVEefI-~G~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~ 356 (864)
T TIGR02068 283 EE--SSGVIVERFI-TGRDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDST 356 (864)
T ss_pred hh--CCcEEEEEec-cCCEEEEEEEC---CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHH
Confidence 54 3579999999 79999986653 34433311 0111111110 000
Q ss_pred ----------ccccc-------------------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec------CC
Q 001014 890 ----------SACMI-------------------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT------SG 934 (1190)
Q Consensus 890 ----------~~~~~-------------------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~------~g 934 (1190)
...++ -+..+++++.++..++|.++++.+|+ .+++||++... ..
T Consensus 357 ~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~~~~~~~ 435 (864)
T TIGR02068 357 ARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDISRPLRDT 435 (864)
T ss_pred HHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCCCCcccc
Confidence 00000 11234567788899999999999998 68889998831 23
Q ss_pred CEEEEEEccCCCCChhh-hhcccCCCHHHHHHHHHc
Q 001014 935 DVYLLEANPRASRTVPF-VSKAIGHPLAKYAALVMS 969 (1190)
Q Consensus 935 ~~~viEiNpR~~~s~~~-~~~~~G~~l~~~~~~~~l 969 (1190)
+..+||+|+.|+=..+. -+...+.+.....+..+.
T Consensus 436 ~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 436 DGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred CcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 45899999999876443 345567788888887765
No 170
>PRK05246 glutathione synthetase; Provisional
Probab=99.48 E-value=2.9e-12 Score=147.00 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcc--eeecCCcHHHHHH-----HhhhcCCCccccccCCch------
Q 001014 664 YCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDR--LYFEPLTVEDVLN-----VIDLERPEGIIVQFGGQT------ 730 (1190)
Q Consensus 664 ~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~--~~~~p~~~e~v~~-----i~~~~~~d~Vi~~~g~~~------ 730 (1190)
|++..++++++++|+++.+++++.-.+....-.+.. +-+.+. ...... ......+|+|++-.+...
T Consensus 19 ~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~-~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~ 97 (316)
T PRK05246 19 DSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDD-KGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIY 97 (316)
T ss_pred ChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccC-CccceeccccccCccccCCEEEEcCCCCCChHHHH
Confidence 567888999999999999998764333221100000 000000 000000 011124788886533321
Q ss_pred hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEE
Q 001014 731 PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVV 810 (1190)
Q Consensus 731 ~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvv 810 (1190)
...+...++ ..| ++++ ++++++..+.||..+.+++. ++|++....+.+++.++.++.+ |+|
T Consensus 98 ~~~~l~~le----------~~g---~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~~~~~~~~~~~~-~vV 158 (316)
T PRK05246 98 ATYLLERAE----------RPG---TLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVTRDKAEIRAFRAEHG-DII 158 (316)
T ss_pred HHHHHHHHH----------hCC---CeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEeCCHHHHHHHHHHCC-CEE
Confidence 223455555 678 8777 48999999999999988765 7899999999999999999887 999
Q ss_pred EecCcCCCCcceEEeCC-HHHHHHHHHHhHhhCCCCcEEEEEecCC--cceEEEeEEecCCCcEEEEeeeeeee-----c
Q 001014 811 VRPSYVLGGRAMEIVYT-DETLVTYLENAVEVDPERPVLIDKYLSD--AIEIDVDALADSCGNVVIGGIMEHIE-----Q 882 (1190)
Q Consensus 811 vKP~~~~gg~Gv~iv~~-~~el~~~~~~~~~~~~~~~vliEefI~~--g~E~~v~v~~d~~G~v~~~~i~e~~~-----~ 882 (1190)
+||.+|.+|+|+.++.. ..++...++. .......++++|+||+. +.++.|.++ + |+++.+.+. ... .
T Consensus 159 lKP~~G~~G~gV~~i~~~~~~~~~~~~~-l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv-~--g~vv~~a~~-R~~~~~~~r 233 (316)
T PRK05246 159 LKPLDGMGGAGIFRVKADDPNLGSILET-LTEHGREPVMAQRYLPEIKEGDKRILLV-D--GEPVGYALA-RIPAGGETR 233 (316)
T ss_pred EEECCCCCccceEEEeCCCccHHHHHHH-HHHccCCeEEEEeccccCCCCCEEEEEE-C--CEEhhheeE-ecCCCCCcc
Confidence 99999999999999954 4444433333 22234568999999965 467777766 3 444321332 221 1
Q ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHH---HHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCC
Q 001014 883 AGVHSGDSACMIPTKTISSSCLDTISSWTIKLA---KRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHP 959 (1190)
Q Consensus 883 ~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~---~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~ 959 (1190)
.+++.|..... ..+++ +..+++.+++ +.+|+ ..++||++- . ||+|||......+.-+..++|+|
T Consensus 234 tN~~~Gg~~~~---~~l~~----~~~~ia~~~~~~l~~~gl-~~~GVDli~----~-~l~EvN~~~p~~~~~~~~~tg~~ 300 (316)
T PRK05246 234 GNLAAGGRGEA---TPLTE----RDREICAAIGPELKERGL-IFVGIDVIG----D-YLTEINVTSPTGIREIERLTGVD 300 (316)
T ss_pred cCccCCceEec---cCCCH----HHHHHHHHHHHHHHHhCC-CEEEEEEeC----C-EEEEEeCCCchHHHHHHHHhCCC
Confidence 23343333222 23554 3455566665 44454 578899984 2 79999987333355568899999
Q ss_pred HHHHHHHHHcC
Q 001014 960 LAKYAALVMSG 970 (1190)
Q Consensus 960 l~~~~~~~~lG 970 (1190)
+++..++.+..
T Consensus 301 ia~~i~~~~~~ 311 (316)
T PRK05246 301 IAGMLWDAIEA 311 (316)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 171
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.43 E-value=6.5e-12 Score=140.60 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=137.0
Q ss_pred cCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh--CC-cEEEecCcCCCCcceEEeCCHH-------
Q 001014 760 GTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI--GY-PVVVRPSYVLGGRAMEIVYTDE------- 829 (1190)
Q Consensus 760 g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i--gy-PvvvKP~~~~gg~Gv~iv~~~~------- 829 (1190)
..+.+..-++.||..+..+|+++|||+|++..+.+.+...+.+.++ ++ |+|+||..|++|+|+.++.+.+
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~ 105 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYRKP 105 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEeccccccccc
Confidence 3578888999999999999999999999998888776554444444 57 6999999999999999997653
Q ss_pred --------HHHHHHHHh----HhhCC-CCcEEEEEecCCc-----------ceEEEeEEecCCCcEEEEeeeeeee----
Q 001014 830 --------TLVTYLENA----VEVDP-ERPVLIDKYLSDA-----------IEIDVDALADSCGNVVIGGIMEHIE---- 881 (1190)
Q Consensus 830 --------el~~~~~~~----~~~~~-~~~vliEefI~~g-----------~E~~v~v~~d~~G~v~~~~i~e~~~---- 881 (1190)
+++..+... ..... ...+++|+++... ..+.|.++.+ ++ ...+.....
T Consensus 106 ~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~-vaa~~R~~~~~~~ 181 (317)
T TIGR02291 106 SGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YP-VMAMMRLPTRASD 181 (317)
T ss_pred cccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EE-EEEEEEccCccCC
Confidence 344433321 11111 2246665555332 3455555543 32 223332211
Q ss_pred -ccccccccccccc--------------------CC-----CCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCC
Q 001014 882 -QAGVHSGDSACMI--------------------PT-----KTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGD 935 (1190)
Q Consensus 882 -~~g~~~gd~~~~~--------------------p~-----~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~ 935 (1190)
..++|.|.....+ |. ..+.....+++.+++.++.+.+|+ |++++|++++.+++
T Consensus 182 ~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~~~g 260 (317)
T TIGR02291 182 GKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDKEEG 260 (317)
T ss_pred cccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCCC
Confidence 2234444332211 00 012234567899999999999998 99999999976789
Q ss_pred EEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcC
Q 001014 936 VYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 936 ~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG 970 (1190)
++|+|+|+.++-+ +......|++-.-..+...+-
T Consensus 261 ~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~~~~~ 294 (317)
T TIGR02291 261 PLVLELNARPGLA-IQIANGAGLLPRLKHIEARLE 294 (317)
T ss_pred EEEEEeCCCCCCC-HHHHHHCCCcHHHHHHHHhhh
Confidence 9999999999988 565777888766655555443
No 172
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.43 E-value=1.4e-11 Score=131.99 Aligned_cols=269 Identities=19% Similarity=0.275 Sum_probs=182.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC-CCCCCccCcceE-EECCCCHH---HHHHHHHHcC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA-TIMTDPGLADRT-YITPMTPE---LVEQVLEKER 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~-~i~p~~~~---~v~~i~~~~~ 167 (1190)
-+|..+|+ ||+.++++.+++.|++++++....- ..-.....+++. +++..... .+.+-++ .
T Consensus 19 i~Iat~gS------------HSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~--~ 84 (361)
T COG1759 19 ITIATIGS------------HSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELR--E 84 (361)
T ss_pred eEEEEeec------------chHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHHHHHHH--H
Confidence 48999988 5789999999999999999976432 222223334333 34433221 2222222 2
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI 247 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i 247 (1190)
-++|+.- +|-....+.. .++..+.-+|.+| +...++...|+...+.+|+++|++.|+- +.++++ +
T Consensus 85 ~n~I~IP-~gSfv~Y~G~----d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~--~~~Pee-------I 149 (361)
T COG1759 85 LNAIFIP-HGSFVAYVGY----DGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKK--YKSPEE-------I 149 (361)
T ss_pred cCeEEec-CCceEEEecc----hhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCcc--cCChHH-------c
Confidence 3445432 3333333333 3455667789998 6677788889999999999999999985 456664 4
Q ss_pred CCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC-----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeee-
Q 001014 248 GEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS-----LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIE- 321 (1190)
Q Consensus 248 g~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~-----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e- 321 (1190)
. -|||||....-||+|-+++.|.+|+.+..++++... +-.++.|||||-| ..+.+..+...-.+.+-+.++.
T Consensus 150 d-r~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~D~ 227 (361)
T COG1759 150 D-RPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGIDR 227 (361)
T ss_pred C-CceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeeeeh
Confidence 5 799999999999999999999999999999987642 2346899999999 6777666554322223222222
Q ss_pred eeCC----C-----------CcccccE-EEEecCCCCCHHHHHHHHHHHHHHHHHh------CCccceEEEEEEEecCCC
Q 001014 322 NVDP----M-----------GVHTGDS-ITVAPAQTLTDKEYQRLRDYSIAIIREI------GVECGGSNVQFAVNPVDG 379 (1190)
Q Consensus 322 ~~~~----~-----------g~~~g~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~~l------g~~~G~~~vef~~~~~~g 379 (1190)
++.. . ++...-. +-..|. ++-+....++-+++.+++++. |+ .|+|++|.++++ +-
T Consensus 228 R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~-iGpFcLq~~~t~-dl 304 (361)
T COG1759 228 RYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGI-IGPFCLQTIVTD-DL 304 (361)
T ss_pred eeeccchhhccCCHHHHhhcCCCceEEEECCcch-hhHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccceeeeeeecC-Cc
Confidence 1110 0 1111111 112444 367777888888888888776 78 499999999998 78
Q ss_pred cEEEEEeCCCCCCchH
Q 001014 380 EVMVIEMNPRVSRSSA 395 (1190)
Q Consensus 380 ~~~viEiNpR~~gs~~ 395 (1190)
++++.|+.||+.+.+.
T Consensus 305 ~~vVfevS~Ri~gGTN 320 (361)
T COG1759 305 EFVVFEVSARIVGGTN 320 (361)
T ss_pred cEEEEEEeccccCCcc
Confidence 8999999999998654
No 173
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.41 E-value=1.9e-11 Score=130.83 Aligned_cols=271 Identities=15% Similarity=0.203 Sum_probs=184.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCC-CCCcCccccCCcceeecCCcHH----HHHHHhhhc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSN-PETVSTDYDTSDRLYFEPLTVE----DVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~-p~~~s~~~~~ad~~~~~p~~~e----~v~~i~~~~ 717 (1190)
.-+|..+|| ||+.++...+++.|++++++... .+.+-..+..+|+........+ ++.+-..
T Consensus 18 ~i~Iat~gS------------HSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~-- 83 (361)
T COG1759 18 DITIATIGS------------HSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELR-- 83 (361)
T ss_pred ceEEEEeec------------chHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHHHHHHH--
Confidence 347888885 67999999999999999988664 3334445555654433221111 2222222
Q ss_pred CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHH
Q 001014 718 RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEAD 797 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e 797 (1190)
.-++|++-++..... +.-++...+.- +|.+| +.+.++...|+...+.+|+++||+.|+- .++++|
T Consensus 84 ~~n~I~IP~gSfv~Y---------~G~d~ie~~~~---vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~--~~~Pee 148 (361)
T COG1759 84 ELNAIFIPHGSFVAY---------VGYDGIENEFE---VPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKK--YKSPEE 148 (361)
T ss_pred HcCeEEecCCceEEE---------ecchhhhhccc---Ccccc-cHhHhhhhcchhhHHHHHHHcCCCCCcc--cCChHH
Confidence 234555545543221 11111111445 89998 7889999999999999999999999984 456665
Q ss_pred HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC-----CCCcEEEEEecCCcceEEEeEEecC-CCcE
Q 001014 798 ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD-----PERPVLIDKYLSDAIEIDVDALADS-CGNV 871 (1190)
Q Consensus 798 ~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~-----~~~~vliEefI~~g~E~~v~v~~d~-~G~v 871 (1190)
+.-|||||+...-||+|-.++.|.+|+.+..++..... +-....||||| -|..+-+..+... .+++
T Consensus 149 -------Idr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv-~G~~f~~~yFyS~i~~~l 220 (361)
T COG1759 149 -------IDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYV-VGAPFYFHYFYSPIKDRL 220 (361)
T ss_pred -------cCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEe-eccceeeeeeeccccCce
Confidence 45699999999999999999999999999888764421 22468999999 8888777777532 4455
Q ss_pred EEEeeeeeeecc--cc---ccccc----------ccccCCCCCCHHHHHHHHHHHHHHHHHc------CCCcceeEEEEE
Q 001014 872 VIGGIMEHIEQA--GV---HSGDS----------ACMIPTKTISSSCLDTISSWTIKLAKRL------NVCGLMNCQYAI 930 (1190)
Q Consensus 872 ~~~~i~e~~~~~--g~---~~gd~----------~~~~p~~~l~~~~~~~i~~~a~~i~~~L------g~~G~~~ief~~ 930 (1190)
-+.++-...+.. |. .+.+. .+.--|..+-+..++++.+++.+++++- |+.|+|.+|.++
T Consensus 221 El~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~ 300 (361)
T COG1759 221 ELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIV 300 (361)
T ss_pred eEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeee
Confidence 555554333221 00 01110 0111233677888899999998888765 788999999999
Q ss_pred ecCCCEEEEEEccCCCCChh
Q 001014 931 TTSGDVYLLEANPRASRTVP 950 (1190)
Q Consensus 931 d~~g~~~viEiNpR~~~s~~ 950 (1190)
+.|=+++|.|+.||..+...
T Consensus 301 t~dl~~vVfevS~Ri~gGTN 320 (361)
T COG1759 301 TDDLEFVVFEVSARIVGGTN 320 (361)
T ss_pred cCCccEEEEEEeccccCCcc
Confidence 88889999999999988643
No 174
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.39 E-value=3.2e-13 Score=128.22 Aligned_cols=100 Identities=34% Similarity=0.530 Sum_probs=91.4
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC--------CcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p--------~~~e~v~~i~ 714 (1190)
.|||||+|+|++ +++++++++++|++++++++||++.+++++.+|+.|++| ++.+.+++++
T Consensus 2 ikkvLIanrGei-----------a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia 70 (110)
T PF00289_consen 2 IKKVLIANRGEI-----------AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIA 70 (110)
T ss_dssp SSEEEESS-HHH-----------HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHH
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHh
Confidence 589999999996 999999999999999999999999999999999999999 9999999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHH
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSI 766 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i 766 (1190)
+++++|.+++++++. +...+++.++ +.| +.++||+++++
T Consensus 71 ~~~g~~~i~pGyg~lse~~~fa~~~~----------~~g---i~fiGp~~~~i 110 (110)
T PF00289_consen 71 RKEGADAIHPGYGFLSENAEFAEACE----------DAG---IIFIGPSPEAI 110 (110)
T ss_dssp HHTTESEEESTSSTTTTHHHHHHHHH----------HTT----EESSS-HHHH
T ss_pred hhhcCcccccccchhHHHHHHHHHHH----------HCC---CEEECcChHhC
Confidence 999999999999887 6778999988 899 99999999875
No 175
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.37 E-value=2.9e-11 Score=135.40 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=129.1
Q ss_pred CCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc--CCC-cEEEecCCCCCCcceEEeCCHH------
Q 001014 202 GAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI--GEF-PLIIRPAFTLGGTGGGIAYNKE------ 272 (1190)
Q Consensus 202 G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i--g~~-PvVVKP~~g~gg~Gv~iv~~~~------ 272 (1190)
.++.+...++.||..+..+|+++|+|+|+++.+.+.+...+...++ + + |+|+||.+|++|+|+.++++.+
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~-~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~ 104 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKD-HPDFVIKPAQGSGGKGILVITSRKDGRYRK 104 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHcc-CCCEEEEECCCCCccCeEEEEecccccccc
Confidence 3677888999999999999999999999998877765433333333 4 5 6999999999999999986653
Q ss_pred ---------HHHHHHHH----HHhcCC-CCcEEEeeecCCC-----------eeeeEEEEEeCCCcEEEEEeeeeeC---
Q 001014 273 ---------EFEAICKA----GLAASL-TSQVLVEKSLLGW-----------KEYELEVMRDLADNVVIICSIENVD--- 324 (1190)
Q Consensus 273 ---------el~~~~~~----~~~~~~-~~~vlVEe~I~G~-----------~E~sv~v~~d~~g~~~~~~~~e~~~--- 324 (1190)
++...+.. +..... ...+++|+++... ..+.|.++.+ ..+ +.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~v--aa~~R~~~~~ 179 (317)
T TIGR02291 105 PSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPV--MAMMRLPTRA 179 (317)
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEE--EEEEEccCcc
Confidence 34443332 222211 2346665554431 3455555542 222 2222221
Q ss_pred ---CCCcccccEEEEec---------------CC----------CCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec
Q 001014 325 ---PMGVHTGDSITVAP---------------AQ----------TLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP 376 (1190)
Q Consensus 325 ---~~g~~~g~~~~~~P---------------a~----------~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~ 376 (1190)
...++.|....... .. .+..+..+++.+.|.++.+++|+ |++++|+++++
T Consensus 180 ~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~--~~~GvDii~~~ 257 (317)
T TIGR02291 180 SDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL--GYMGVDMVLDK 257 (317)
T ss_pred CCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC--CeEEEEEEEeC
Confidence 11233343322110 00 12235678899999999999997 99999999987
Q ss_pred CCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 001014 377 VDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAK 411 (1190)
Q Consensus 377 ~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~ 411 (1190)
+++++|+|+|+.++-+ +......|++--...+.
T Consensus 258 -~~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~ 290 (317)
T TIGR02291 258 -EEGPLVLELNARPGLA-IQIANGAGLLPRLKHIE 290 (317)
T ss_pred -CCCEEEEEeCCCCCCC-HHHHHHCCCcHHHHHHH
Confidence 6789999999887755 44455566654444444
No 176
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.29 E-value=2.9e-12 Score=121.67 Aligned_cols=102 Identities=36% Similarity=0.567 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC--------CCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP--------MTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p--------~~~~~v~~i 162 (1190)
|.+||||+|+|++ +.+++++++++|++++++++++++.+++...+|+.|..| ++.+.+.++
T Consensus 1 ~ikkvLIanrGei-----------a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 1 MIKKVLIANRGEI-----------AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SSSEEEESS-HHH-----------HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHH
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhH
Confidence 4689999999987 569999999999999999999999999999999999999 999999999
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHH
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAI 208 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i 208 (1190)
++++++|+++|+++ .++....+++ .+++.|+.++||+++++
T Consensus 70 a~~~g~~~i~pGyg---~lse~~~fa~--~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 70 ARKEGADAIHPGYG---FLSENAEFAE--ACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHTTESEEESTSS---TTTTHHHHHH--HHHHTT-EESSS-HHHH
T ss_pred hhhhcCcccccccc---hhHHHHHHHH--HHHHCCCEEECcChHhC
Confidence 99999999999887 3333334433 46689999999999875
No 177
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.04 E-value=1e-08 Score=113.90 Aligned_cols=186 Identities=16% Similarity=0.289 Sum_probs=134.5
Q ss_pred cCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC-CC--CCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeC
Q 001014 750 ASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS-IE--QPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVY 826 (1190)
Q Consensus 750 ~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g-Ip--~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~ 826 (1190)
..| ++++++ ...||+...++|.+.. +. .|++..+.+.+++.++.+..+ -|.+||..|+.|+||..+.
T Consensus 6 ~~~---i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~ 75 (262)
T PF14398_consen 6 QKG---IPFFNP------GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIE 75 (262)
T ss_pred cCC---CEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEE
Confidence 667 899875 3589999999999864 44 499999999999999988764 5899999999999986642
Q ss_pred ----------------------CHHHHHHHHHHhHhhCCCCcEEEEEecC----CcceEEEeEE--ecCCCcEEEEeeee
Q 001014 827 ----------------------TDETLVTYLENAVEVDPERPVLIDKYLS----DAIEIDVDAL--ADSCGNVVIGGIME 878 (1190)
Q Consensus 827 ----------------------~~~el~~~~~~~~~~~~~~~vliEefI~----~g~E~~v~v~--~d~~G~v~~~~i~e 878 (1190)
+.+++...+.. ......+|||+.|+ .|+-+++-++ .+++|+..+.++.-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~ 152 (262)
T PF14398_consen 76 KKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKE---LLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVA 152 (262)
T ss_pred EeCCEEEEEEccCCceeEEEeCCHHHHHHHHHH---hcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEEEEEE
Confidence 44666666654 34466899999994 4665555555 57778877777665
Q ss_pred eeecc-----ccccccccccc----CCCCCCHHHHHHHHHHHHHHHHHc----CC-CcceeEEEEEecCCCEEEEEEccC
Q 001014 879 HIEQA-----GVHSGDSACMI----PTKTISSSCLDTISSWTIKLAKRL----NV-CGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 879 ~~~~~-----g~~~gd~~~~~----p~~~l~~~~~~~i~~~a~~i~~~L----g~-~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
.+-.. .++.|.....+ ....-.....+++.+.+..+++.| +. -|-+++|+.+|.+|++|+||||++
T Consensus 153 Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~k 232 (262)
T PF14398_consen 153 RVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSK 232 (262)
T ss_pred EEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCC
Confidence 55322 23334333322 010113346667777777777665 55 588999999999999999999999
Q ss_pred CCCC
Q 001014 945 ASRT 948 (1190)
Q Consensus 945 ~~~s 948 (1190)
|+..
T Consensus 233 P~~~ 236 (262)
T PF14398_consen 233 PGKF 236 (262)
T ss_pred CCcc
Confidence 9875
No 178
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.01 E-value=8.4e-09 Score=121.82 Aligned_cols=178 Identities=19% Similarity=0.256 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhC-CcEEEecCcCCCC----cceEEeCCHHHHHHHHHHhHhhC---
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIG-YPVVVRPSYVLGG----RAMEIVYTDETLVTYLENAVEVD--- 842 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~ig-yPvvvKP~~~~gg----~Gv~iv~~~~el~~~~~~~~~~~--- 842 (1190)
+.+..|++|+++|||+|++..+.+.+++.++++++| ||+|+||....|| -||.++.|.+++.+++++++...
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 356778999999999999999999999999999999 9999999833222 28999999999999998765410
Q ss_pred --------CCCcEEEEEecCCcceEEEeEEecCC--CcEEEEeee-----ee-------------eec-ccccccccccc
Q 001014 843 --------PERPVLIDKYLSDAIEIDVDALADSC--GNVVIGGIM-----EH-------------IEQ-AGVHSGDSACM 893 (1190)
Q Consensus 843 --------~~~~vliEefI~~g~E~~v~v~~d~~--G~v~~~~i~-----e~-------------~~~-~g~~~gd~~~~ 893 (1190)
....++||+|++.++|+.+.++.|+. |-+++++.. |. +.+ .+....+....
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~~~ 163 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREI 163 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHHHH
Confidence 11369999999779999999999863 334444410 10 100 00100000000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEE---EEEecCCCEEEEEEccCCCCC
Q 001014 894 IPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQ---YAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 894 ~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ie---f~~d~~g~~~viEiNpR~~~s 948 (1190)
.-+..++....+.+.+++.++.+.+.-..+..+| ++++.+|+++.++.--.+..+
T Consensus 164 ~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~ 221 (386)
T TIGR01016 164 AKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDN 221 (386)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccc
Confidence 0111345666677777777777766433333333 233334445555544444443
No 179
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.96 E-value=8.1e-09 Score=121.96 Aligned_cols=105 Identities=25% Similarity=0.327 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCC---CCC-cceEEeCCHHHHHHHHHHHHhc----
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFT---LGG-TGGGIAYNKEEFEAICKAGLAA---- 284 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g---~gg-~Gv~iv~~~~el~~~~~~~~~~---- 284 (1190)
+.+..|++|+++|||+|++..+++.+++.++++++|.||+|+||... .|+ -||.+++|.+|+.+++++++..
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 35677899999999999999999999999999898757999999733 222 3899999999999999888752
Q ss_pred -------CCCCcEEEeeecCCCeeeeEEEEEeCC-CcEEEE
Q 001014 285 -------SLTSQVLVEKSLLGWKEYELEVMRDLA-DNVVII 317 (1190)
Q Consensus 285 -------~~~~~vlVEe~I~G~~E~sv~v~~d~~-g~~~~~ 317 (1190)
.....++||+++++.+|+.+.+++|.. ...+++
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~ 124 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIM 124 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEE
Confidence 011369999999944999999999864 333333
No 180
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.93 E-value=5.9e-08 Score=109.12 Aligned_cols=198 Identities=19% Similarity=0.241 Sum_probs=126.8
Q ss_pred CCHHHHhhccCHHHHHHHHHHcCCCCCCcee-----------ecCHHHHHHHHHHh-CCcEEEecCcCCCCcceEEeCCH
Q 001014 761 TSPDSIDAAEDRERFNAIIKELSIEQPKGGI-----------AKSEADALAIAKEI-GYPVVVRPSYVLGGRAMEIVYTD 828 (1190)
Q Consensus 761 ~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~-----------~~s~~e~~~~~~~i-gyPvvvKP~~~~gg~Gv~iv~~~ 828 (1190)
.+.+...++.||..|++++.++|||+|+... ..+.+++.+++... ..++++||+.|.+|+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 4678888999999999999999999999311 24567788887664 58999999999999999998765
Q ss_pred H------HHHHHHHHhHhhCCCCcEEEEEecCCc-----------ceEEEeEEecCCCcEEEEeeeeeeecc-----ccc
Q 001014 829 E------TLVTYLENAVEVDPERPVLIDKYLSDA-----------IEIDVDALADSCGNVVIGGIMEHIEQA-----GVH 886 (1190)
Q Consensus 829 ~------el~~~~~~~~~~~~~~~vliEefI~~g-----------~E~~v~v~~d~~G~v~~~~i~e~~~~~-----g~~ 886 (1190)
+ +.......+.. .....++||++|..- .-+.|..+.++ |.+.+...+-.+-.. ..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~ 173 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFH 173 (285)
T ss_pred cCcccccchhHHHHHHHh-cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccC
Confidence 4 11111111111 222279999999422 23566666675 566554433222110 112
Q ss_pred cccccccc----------------------CCC-----CCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEE
Q 001014 887 SGDSACMI----------------------PTK-----TISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLL 939 (1190)
Q Consensus 887 ~gd~~~~~----------------------p~~-----~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~vi 939 (1190)
.|.-.+.+ |-. .+.-...+++.+.+.++.+.+...|.++.|+.+|++| +++|
T Consensus 174 ~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~ll 252 (285)
T PF14397_consen 174 QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLL 252 (285)
T ss_pred CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEE
Confidence 22110000 111 0111235789999999999898889999999997676 9999
Q ss_pred EEccCCCCChhhhhcccCCCHHH
Q 001014 940 EANPRASRTVPFVSKAIGHPLAK 962 (1190)
Q Consensus 940 EiNpR~~~s~~~~~~~~G~~l~~ 962 (1190)
|.|.+.+..... ..+.|..+..
T Consensus 253 E~N~~~~pgl~~-~~~~g~gl~~ 274 (285)
T PF14397_consen 253 EGNARWDPGLMI-QIANGPGLFP 274 (285)
T ss_pred EeeCCCCCCcHh-hhccCcchHH
Confidence 999994333222 2445554444
No 181
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.93 E-value=6.8e-08 Score=108.61 Aligned_cols=198 Identities=16% Similarity=0.214 Sum_probs=129.6
Q ss_pred CcHHHHHHHhcHHHHHHHHHHcCCCCCCeee-----------cCCHHHHHHHHHHc-CCCcEEEecCCCCCCcceEEeCC
Q 001014 203 AKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI-----------GNTLDECISIANEI-GEFPLIIRPAFTLGGTGGGIAYN 270 (1190)
Q Consensus 203 ~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~-----------v~s~~e~~~~~~~i-g~~PvVVKP~~g~gg~Gv~iv~~ 270 (1190)
++.+...++.||..|++++.++|+|+|+... ..+.+++.++.... . .++|+||..|++|+|+.++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~viKP~~G~~G~Gi~~i~~ 94 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAP-DRFVIKPANGSGGKGILVIDR 94 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccC-CcEEEEeCCCCCccCEEEEEe
Confidence 6778889999999999999999999999321 24567888888776 4 599999999999999998776
Q ss_pred HH------HHHHHHHHHHhcCCCCcEEEeeecCC-----------CeeeeEEEEEeCCCcEEEEEeeeeeCCC-----Cc
Q 001014 271 KE------EFEAICKAGLAASLTSQVLVEKSLLG-----------WKEYELEVMRDLADNVVIICSIENVDPM-----GV 328 (1190)
Q Consensus 271 ~~------el~~~~~~~~~~~~~~~vlVEe~I~G-----------~~E~sv~v~~d~~g~~~~~~~~e~~~~~-----g~ 328 (1190)
.+ +....... +.......+||||+|.- -..+.+..+.+. +.+.++..+-++... ..
T Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~ 172 (285)
T PF14397_consen 95 RDGSEINRDISALYAG-LESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNF 172 (285)
T ss_pred ecCcccccchhHHHHH-HHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCccccc
Confidence 54 12222222 22222228999999972 245566677766 555544333322110 01
Q ss_pred -----------ccc-----------cEEEEecCC-----CCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcE
Q 001014 329 -----------HTG-----------DSITVAPAQ-----TLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEV 381 (1190)
Q Consensus 329 -----------~~g-----------~~~~~~Pa~-----~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~ 381 (1190)
.+| .....-|.- .+.-..++++.+.+.++.+.+..- ++...|+.+|+ +| |
T Consensus 173 ~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~-~~iGWDvait~-~G-p 249 (285)
T PF14397_consen 173 HQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGL-GYIGWDVAITE-DG-P 249 (285)
T ss_pred CCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCC-CeEEEEEEEcC-CC-c
Confidence 111 111111211 122235788999999999988774 99999999996 66 9
Q ss_pred EEEEeCCCCCCchHHHHHHhCCCHHH
Q 001014 382 MVIEMNPRVSRSSALASKATGFPIAK 407 (1190)
Q Consensus 382 ~viEiNpR~~gs~~l~~~atG~~l~~ 407 (1190)
++||.|.+.+....+ ..++|..+..
T Consensus 250 ~llE~N~~~~pgl~~-~~~~g~gl~~ 274 (285)
T PF14397_consen 250 VLLEGNARWDPGLMI-QIANGPGLFP 274 (285)
T ss_pred EEEEeeCCCCCCcHh-hhccCcchHH
Confidence 999999995433322 2455554444
No 182
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.92 E-value=6.5e-08 Score=107.59 Aligned_cols=187 Identities=15% Similarity=0.257 Sum_probs=134.0
Q ss_pred HHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcC-CC--CCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEE---
Q 001014 194 EKYGVELIGAKLDAIKKAEDRDLFKQAMKTIG-VK--TPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI--- 267 (1190)
Q Consensus 194 e~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~G-ip--vp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~i--- 267 (1190)
+..|++++.+ ...||+.+.+.|.+.. +. .|++..+.+.+++.++.+..+ -|+|||..|+.|+||..
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~--~vylKP~~Gs~G~gI~ri~~ 76 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK--SVYLKPDNGSKGKGIIRIEK 76 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC--EEEEEeCCCCCCccEEEEEE
Confidence 4578898864 3589999999999864 44 699999999999999998877 79999999999999842
Q ss_pred -------------------eCCHHHHHHHHHHHHhcCCCCcEEEeeecC-----CCee--eeEEEEEeCCCcEEEEEeee
Q 001014 268 -------------------AYNKEEFEAICKAGLAASLTSQVLVEKSLL-----GWKE--YELEVMRDLADNVVIICSIE 321 (1190)
Q Consensus 268 -------------------v~~~~el~~~~~~~~~~~~~~~vlVEe~I~-----G~~E--~sv~v~~d~~g~~~~~~~~e 321 (1190)
..+.+++...+.... ....+|||+.|+ | +- +.|.+..++.|...+....-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~yIiQq~I~l~~~~g-r~fD~RvlvqK~~~G~W~vtg~~~ 152 (262)
T PF14398_consen 77 KGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL---GKRRYIIQQGIPLATYDG-RPFDFRVLVQKNGSGKWQVTGIVA 152 (262)
T ss_pred eCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc---CCCcEEEeCCccccccCC-CeEEEEEEEEECCCCCEEEEEEEE
Confidence 445677777766543 346899999997 4 44 44555566667766666555
Q ss_pred eeCCC-----CcccccEEEEecCCCC-----CHHHHHHHHHHHHHHHHHh----CCccceEEEEEEEecCCCcEEEEEeC
Q 001014 322 NVDPM-----GVHTGDSITVAPAQTL-----TDKEYQRLRDYSIAIIREI----GVECGGSNVQFAVNPVDGEVMVIEMN 387 (1190)
Q Consensus 322 ~~~~~-----g~~~g~~~~~~Pa~~l-----~~~~~~~l~~~a~~i~~~l----g~~~G~~~vef~~~~~~g~~~viEiN 387 (1190)
++.+. .++.|..+..... .+ .....++|.+.+..+++.| |...|-+++|+.+|. +|.+++||||
T Consensus 153 Rva~~~~ivTN~~~GG~~~~~~~-~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~-~g~iWliEvN 230 (262)
T PF14398_consen 153 RVAKPGSIVTNLSQGGTALPFEE-VLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDK-NGKIWLIEVN 230 (262)
T ss_pred EEcCCCCceeccCCCceecCHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcC-CCCEEEEEEe
Confidence 55432 2333443322111 12 2336677777777777766 442388999999997 9999999999
Q ss_pred CCCCCch
Q 001014 388 PRVSRSS 394 (1190)
Q Consensus 388 pR~~gs~ 394 (1190)
++++...
T Consensus 231 ~kP~~~~ 237 (262)
T PF14398_consen 231 SKPGKFD 237 (262)
T ss_pred CCCCcch
Confidence 9988753
No 183
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.89 E-value=5.7e-08 Score=114.89 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh-CCcEEEecCcCCCCc----ceEEeCCHHHHHHHHHHhHhhC---
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEI-GYPVVVRPSYVLGGR----AMEIVYTDETLVTYLENAVEVD--- 842 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i-gyPvvvKP~~~~gg~----Gv~iv~~~~el~~~~~~~~~~~--- 842 (1190)
+.+..|++|+++|||+|++..+++.+++.++++++ |||+|+||....+|+ ||.+..|.+++.+++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~ 83 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVT 83 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceee
Confidence 57788999999999999999999999999999999 999999998655665 9999999999999998765321
Q ss_pred -----CC---CcEEEEEecCCcceEEEeEEecC-CCcEEE
Q 001014 843 -----PE---RPVLIDKYLSDAIEIDVDALADS-CGNVVI 873 (1190)
Q Consensus 843 -----~~---~~vliEefI~~g~E~~v~v~~d~-~G~v~~ 873 (1190)
.. ..++||++++.+.|+.+.+.+|+ .|.+++
T Consensus 84 ~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~ 123 (388)
T PRK00696 84 HQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVF 123 (388)
T ss_pred eccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEE
Confidence 11 24999999977999999999997 455544
No 184
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.88 E-value=5e-08 Score=115.33 Aligned_cols=103 Identities=27% Similarity=0.327 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc-CCCcEEEecCCCCCCc----ceEEeCCHHHHHHHHHHHHhcC--
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI-GEFPLIIRPAFTLGGT----GGGIAYNKEEFEAICKAGLAAS-- 285 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i-g~~PvVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~~~~~-- 285 (1190)
+.+..|++|+++|||+|++..+++.+++.++++++ | ||+|+||....+|+ ||.++.|.+|+.+++++++...
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g-~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~ 82 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGG-GVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLV 82 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCC-CcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhcccee
Confidence 57788999999999999999999999999999999 8 99999998655555 8999999999999999887431
Q ss_pred ------C---CCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 286 ------L---TSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 286 ------~---~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
. ...++||+++++..|+.+.+.+|.....++
T Consensus 83 ~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv 122 (388)
T PRK00696 83 THQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVV 122 (388)
T ss_pred eeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceE
Confidence 1 125999999995599999999997544443
No 185
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.55 E-value=2e-06 Score=96.48 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCc----ceEEeCCHHHHHHHHHHHHh----cC
Q 001014 214 RDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGT----GGGIAYNKEEFEAICKAGLA----AS 285 (1190)
Q Consensus 214 K~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~~~----~~ 285 (1190)
-+..|++|+++|||+|++..+.+++++.+++.++|+.|+|||+.--.||+ ||.++.|.+|+.++.++++. ..
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~ 84 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTD 84 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccC
Confidence 35678999999999999999999999999999997579999997666665 78999999999999999987 22
Q ss_pred C----CCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEE
Q 001014 286 L----TSQVLVEKSLL-GWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 286 ~----~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
. -..++||+.++ -.+||-+.++.|+...+.+++
T Consensus 85 ~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~ 122 (387)
T COG0045 85 IKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLM 122 (387)
T ss_pred cCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEE
Confidence 1 35799999999 424999999998877666553
No 186
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.54 E-value=9e-07 Score=93.67 Aligned_cols=101 Identities=26% Similarity=0.332 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCc----ceEEeCCHHHHHHHHHHHHhcC-----
Q 001014 215 DLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGT----GGGIAYNKEEFEAICKAGLAAS----- 285 (1190)
Q Consensus 215 ~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~~~~~----- 285 (1190)
+..|++|+++|||+|++.++++++++.+++..+|..++||||.--.||+ ||.+++|++|+.++..+++...
T Consensus 5 yqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Q 84 (202)
T PF08442_consen 5 YQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQ 84 (202)
T ss_dssp HHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TT
T ss_pred HHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeee
Confidence 5678999999999999999999999999999999335899998767666 6889999999999999887431
Q ss_pred ------CCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 286 ------LTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 286 ------~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
....++||++++=.+|+-+.+..|+.....
T Consensus 85 tg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p 120 (202)
T PF08442_consen 85 TGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGP 120 (202)
T ss_dssp STTTEEEE--EEEEE---CCEEEEEEEEEETTTTEE
T ss_pred cCCCCCEeeEEEEEecCccCceEEEEEEeccCCCce
Confidence 135799999999889999999998765543
No 187
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.52 E-value=2.4e-06 Score=95.85 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhC-CcEEEecCcCCCCc----ceEEeCCHHHHHHHHHHhHh----hCC
Q 001014 773 ERFNAIIKELSIEQPKGGIAKSEADALAIAKEIG-YPVVVRPSYVLGGR----AMEIVYTDETLVTYLENAVE----VDP 843 (1190)
Q Consensus 773 ~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~ig-yPvvvKP~~~~gg~----Gv~iv~~~~el~~~~~~~~~----~~~ 843 (1190)
+..+++|+++|||+|++.++.+.+++.++++++| .|+|||+--..||| ||+++.|.+|..++.++.+. ...
T Consensus 6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~ 85 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDI 85 (387)
T ss_pred HHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCc
Confidence 5678899999999999999999999999999998 89999998777766 69999999999999988765 221
Q ss_pred ----CCcEEEEEecC-CcceEEEeEEecCCCcEEE
Q 001014 844 ----ERPVLIDKYLS-DAIEIDVDALADSCGNVVI 873 (1190)
Q Consensus 844 ----~~~vliEefI~-~g~E~~v~v~~d~~G~v~~ 873 (1190)
-..+|||++++ ..+||-+.++.|...+...
T Consensus 86 ~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~ 120 (387)
T COG0045 86 KGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPV 120 (387)
T ss_pred CCceeeEEEEEecCCCccceEEEEEEEEcCCCcEE
Confidence 23589999997 3449999999987555433
No 188
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.50 E-value=1.2e-06 Score=92.73 Aligned_cols=98 Identities=21% Similarity=0.318 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCc-EEEecCcCCCCc----ceEEeCCHHHHHHHHHHhHhhC-----
Q 001014 773 ERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYP-VVVRPSYVLGGR----AMEIVYTDETLVTYLENAVEVD----- 842 (1190)
Q Consensus 773 ~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyP-vvvKP~~~~gg~----Gv~iv~~~~el~~~~~~~~~~~----- 842 (1190)
+..+++|+++|||+|++.++.+.+++.++++.+|.| +||||.--.||| ||.++.|++|..++..+.+...
T Consensus 5 yqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Q 84 (202)
T PF08442_consen 5 YQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQ 84 (202)
T ss_dssp HHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TT
T ss_pred HHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeee
Confidence 567899999999999999999999999999999975 799998777776 5899999999999888753321
Q ss_pred ------CCCcEEEEEecCCcceEEEeEEecCCCc
Q 001014 843 ------PERPVLIDKYLSDAIEIDVDALADSCGN 870 (1190)
Q Consensus 843 ------~~~~vliEefI~~g~E~~v~v~~d~~G~ 870 (1190)
.-..++||++++..+|+-+.+..|++.+
T Consensus 85 tg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 85 TGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp STTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred cCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 1135899999999999999999886533
No 189
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.47 E-value=1.4e-06 Score=97.38 Aligned_cols=177 Identities=16% Similarity=0.278 Sum_probs=107.0
Q ss_pred eEEccCCHHHHhhccCHHHHHHHHHHc-------CCCCCCceeec-CHHHHHHHH--HHhCCcEEEecCcCC---CCcce
Q 001014 756 VRIWGTSPDSIDAAEDRERFNAIIKEL-------SIEQPKGGIAK-SEADALAIA--KEIGYPVVVRPSYVL---GGRAM 822 (1190)
Q Consensus 756 i~~~g~~~~~i~~~~DK~~~~~~l~~~-------gIp~p~~~~~~-s~~e~~~~~--~~igyPvvvKP~~~~---gg~Gv 822 (1190)
+.++ -++++++.+.||..+.++++++ .+.+|++..+. +.+++.+.. ..+.||+|+||.... .+..|
T Consensus 79 v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~M 157 (307)
T PF05770_consen 79 VVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKM 157 (307)
T ss_dssp SEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEE
T ss_pred eEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEE
Confidence 6666 3789999999999999998886 67889998877 333444443 347799999997654 56789
Q ss_pred EEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC-CcceEEEeEEecCCCcEEEEeeee---eeec------cccccccccc
Q 001014 823 EIVYTDETLVTYLENAVEVDPERPVLIDKYLS-DAIEIDVDALADSCGNVVIGGIME---HIEQ------AGVHSGDSAC 892 (1190)
Q Consensus 823 ~iv~~~~el~~~~~~~~~~~~~~~vliEefI~-~g~E~~v~v~~d~~G~v~~~~i~e---~~~~------~g~~~gd~~~ 892 (1190)
.++.+++.|.+. ..|+++||||+ +|.-|-|-+++|. +.+.... ++.. .+........
T Consensus 158 aivf~~~gL~~L---------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs 224 (307)
T PF05770_consen 158 AIVFNEEGLKDL---------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRPSLPNVSSGKLDREEIFFDFHQVS 224 (307)
T ss_dssp EEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEETTE----EEEEEEE------SSS-TCGGCCCEGGGTC
T ss_pred EEEECHHHHhhc---------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECCCCCCCCcccccccccceeccccC
Confidence 999999998642 35899999995 4566777777652 2222211 1111 0000000100
Q ss_pred ccC-----------CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe-cC-CCEEEEEEccCCCC
Q 001014 893 MIP-----------TKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT-TS-GDVYLLEANPRASR 947 (1190)
Q Consensus 893 ~~p-----------~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d-~~-g~~~viEiNpR~~~ 947 (1190)
..+ +......-.+.+.+++..+-++||+ -+|++|++++ .+ |++|||+||.-+|=
T Consensus 225 ~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDINyFPgY 291 (307)
T PF05770_consen 225 KLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDINYFPGY 291 (307)
T ss_dssp STTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEEEES--T
T ss_pred CccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEeccCCCc
Confidence 000 0011111235678888999999999 6999999997 34 78999999987764
No 190
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.46 E-value=2.9e-07 Score=98.92 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCC-----CCcceEE-eCCHHHHHHHHHHhHhhC--
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVL-----GGRAMEI-VYTDETLVTYLENAVEVD-- 842 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~-----gg~Gv~i-v~~~~el~~~~~~~~~~~-- 842 (1190)
+-...+++|..+|||+|++..+++.+++.++++++|||+++|-.... .--||.+ +.|++++.+++++.....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~ 90 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAA 90 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999996543 2236666 789999999998753321
Q ss_pred -----CCCcEEEEEecC-CcceEEEeEEecC-CCcEEEEee
Q 001014 843 -----PERPVLIDKYLS-DAIEIDVDALADS-CGNVVIGGI 876 (1190)
Q Consensus 843 -----~~~~vliEefI~-~g~E~~v~v~~d~-~G~v~~~~i 876 (1190)
....++||+.++ .|.|+.|.+.+|. .|-+++++.
T Consensus 91 ~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 91 HHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp H-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred hCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 235799999997 7999999999987 566766664
No 191
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.43 E-value=4.9e-06 Score=97.75 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc-EEEecCCCCCCc----ceEEeCCHHHHHHHHHHHHhcC---
Q 001014 214 RDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP-LIIRPAFTLGGT----GGGIAYNKEEFEAICKAGLAAS--- 285 (1190)
Q Consensus 214 K~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P-vVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~~~~~--- 285 (1190)
-+..|++|+++|||+|++..+++.+++.+.++++| || +|+|+....+++ ||.+..|.+|+.+++++++...
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg-~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~ 83 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQAVYRARELG-GWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVT 83 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcC-CCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhh
Confidence 34568999999999999999999999999999999 95 599984333333 7888999999999999987541
Q ss_pred --------CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 286 --------LTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 286 --------~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
....++||+.+++.+|+-+.+.+|.....+++
T Consensus 84 ~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~ 123 (392)
T PRK14046 84 HQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRV 123 (392)
T ss_pred hccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEE
Confidence 23469999999977999999999975554443
No 192
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.41 E-value=6e-06 Score=96.97 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCc-EEEecCcCC----CCcceEEeCCHHHHHHHHHHhHhhC----
Q 001014 772 RERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYP-VVVRPSYVL----GGRAMEIVYTDETLVTYLENAVEVD---- 842 (1190)
Q Consensus 772 K~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyP-vvvKP~~~~----gg~Gv~iv~~~~el~~~~~~~~~~~---- 842 (1190)
-+..+++|+++|||+|++.++.+.+|+.++++++||| +|+|..... .+-||.+..|.+++.+++++.....
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~ 84 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTH 84 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhh
Confidence 3566899999999999999999999999999999995 599974333 3347899999999999998865431
Q ss_pred -------CCCcEEEEEecCCcceEEEeEEecC-CCcEEEEe
Q 001014 843 -------PERPVLIDKYLSDAIEIDVDALADS-CGNVVIGG 875 (1190)
Q Consensus 843 -------~~~~vliEefI~~g~E~~v~v~~d~-~G~v~~~~ 875 (1190)
.-..++||++++.+.|+-+.+..|. .|.+++++
T Consensus 85 ~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 85 QTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred ccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 1235999999988999999999987 45555553
No 193
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.39 E-value=2e-06 Score=96.16 Aligned_cols=182 Identities=20% Similarity=0.278 Sum_probs=108.0
Q ss_pred CCcEeCCcHHHHHHHhcHHHHHHHHHHc-------CCCCCCeeecC-CHHHHHHHH--HHcCCCcEEEecCCCCC---Cc
Q 001014 197 GVELIGAKLDAIKKAEDRDLFKQAMKTI-------GVKTPPSGIGN-TLDECISIA--NEIGEFPLIIRPAFTLG---GT 263 (1190)
Q Consensus 197 gi~~~G~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~-s~~e~~~~~--~~ig~~PvVVKP~~g~g---g~ 263 (1190)
++.++ -++++++...||..|.+.+.++ .+.+|++..+. +.+++.+.. +.+. ||+|+||....| +.
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~-fPlI~KPlvA~Gsa~SH 155 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLK-FPLICKPLVACGSADSH 155 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS--SSEEEEESB-SSTSCCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCc-ccEEeeehhhcCCccce
Confidence 45555 5778999999999999988875 67889998887 333343332 4588 999999976544 56
Q ss_pred ceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcc-------cc----
Q 001014 264 GGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICSIENVDPMGVH-------TG---- 331 (1190)
Q Consensus 264 Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~-------~g---- 331 (1190)
.+.++.+++.|.+. ..++++||||. |..-|-|-|+++.- .++.-.+..++...... +.
T Consensus 156 ~Maivf~~~gL~~L---------~~P~VlQeFVNHggvLfKVyVvGd~v-~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~ 225 (307)
T PF05770_consen 156 KMAIVFNEEGLKDL---------KPPCVLQEFVNHGGVLFKVYVVGDKV-FVVKRPSLPNVSSGKLDREEIFFDFHQVSK 225 (307)
T ss_dssp EEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEETTEE-EEEEEE------SSS-TCGGCCCEGGGTCS
T ss_pred EEEEEECHHHHhhc---------CCCEEEEEeecCCCEEEEEEEecCEE-EEEECCCCCCCCcccccccccceeccccCC
Confidence 78999999998752 34799999998 43777777775311 11122333333221100 00
Q ss_pred -----cE--EEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCC-CcEEEEEeC--CCCCCc
Q 001014 332 -----DS--ITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVD-GEVMVIEMN--PRVSRS 393 (1190)
Q Consensus 332 -----~~--~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~-g~~~viEiN--pR~~gs 393 (1190)
.. ....+.. ....-...+.++|..+-++||+ -.+++|++++..+ |++++|+|| |.+.+-
T Consensus 226 ~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL--~LFgfDvI~~~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 226 LESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL--TLFGFDVIRENGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp TTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT---SEEEEEEEEGCCT-SSEEEEEEEES--TTTS
T ss_pred ccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc--ceeeeEEEEEcCCCCcEEEEEeccCCCccCC
Confidence 00 0000111 1111235688899999999999 6999999998777 789999999 776663
No 194
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=98.31 E-value=1.7e-06 Score=79.89 Aligned_cols=97 Identities=23% Similarity=0.336 Sum_probs=67.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCC-C-eEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEG-Y-EVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-~-~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
|||||||+| ++|| .++++|++.. . ++++..-|+.+. ..+..+.+.+.+.+.+.++++++++|.
T Consensus 1 MkVLviGsG------gREH-----Aia~~l~~s~~v~~v~~aPGN~G~~----~~~~~~~~~~~d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 1 MKVLVIGSG------GREH-----AIAWKLSQSPSVEEVYVAPGNPGTA----ELGKNVPIDITDPEELADFAKENKIDL 65 (100)
T ss_dssp EEEEEEESS------HHHH-----HHHHHHTTCTTEEEEEEEE--TTGG----GTSEEE-S-TT-HHHHHHHHHHTTESE
T ss_pred CEEEEECCC------HHHH-----HHHHHHhcCCCCCEEEEeCCCHHHH----hhceecCCCCCCHHHHHHHHHHcCCCE
Confidence 489999999 8998 8889998763 3 555555555432 333333357778999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHH
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKK 210 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~ 210 (1190)
|+++.+ .++...+ .+.|++.|++++||+.+++++
T Consensus 66 vvvGPE--~pL~~Gl----~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 66 VVVGPE--APLVAGL----ADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp EEESSH--HHHHTTH----HHHHHHTT-CEES--HHHHHH
T ss_pred EEECCh--HHHHHHH----HHHHHHCCCcEECcCHHHHhc
Confidence 998776 4554444 568899999999999988764
No 195
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=98.27 E-value=3.9e-06 Score=85.99 Aligned_cols=112 Identities=28% Similarity=0.402 Sum_probs=83.2
Q ss_pred ceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc------CC-----CCcHHhHHHc-----
Q 001014 1043 TVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH------EG-----RPHAGDMVAN----- 1106 (1190)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~------e~-----~~~~~~~i~~----- 1106 (1190)
++|+|+.+ |+.+.++++.|.++||+|+||.||+++|+++||+|+.|.++. +| +|.|.--|-.
T Consensus 2 ~vLISVsD--K~~l~~lAk~L~~lGf~I~AT~GTAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~ 79 (187)
T cd01421 2 RALISVSD--KTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNE 79 (187)
T ss_pred EEEEEEeC--cccHHHHHHHHHHCCCEEEEccHHHHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCCh
Confidence 47889887 889999999999999999999999999999999999999884 12 3444333322
Q ss_pred ----------CcEEEEE-EcCC-C----C-CCC------C--cccHHHHHHHHHCC--CcEEccHHHHHHHHHHHHh
Q 001014 1107 ----------GQIQMMV-ITSS-G----D-SLD------Q--IDGLKLRRRGLAYK--VPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1107 ----------~~i~lvi-nt~~-~----~-~~~------~--~d~~~iRr~A~~~~--ip~~T~~~~a~a~~~al~~ 1156 (1190)
+.||||| |... . + +.+ . --|-.+=|+|.++. |.++|+++.-..+++.|+.
T Consensus 80 ~~~~~~~~~i~~idlVvvNlYpF~~~~~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~vv~dp~dY~~v~~~l~~ 156 (187)
T cd01421 80 EHKDLEEHGIEPIDLVVVNLYPFEETVAKGNVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKS 156 (187)
T ss_pred hHHHHHHcCCCCeeEEEEcccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhcCCCeEEEcCHHHHHHHHHHHHh
Confidence 5799776 5522 1 1 110 1 12555555555555 9999999999999999975
No 196
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.26 E-value=2.5e-05 Score=91.83 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHh---CCcEEEecCcCCCCcc-----------eEEeCCHHHHHHHHHH
Q 001014 772 RERFNAIIKELSIEQPKGGIAKSEADALAIAKEI---GYPVVVRPSYVLGGRA-----------MEIVYTDETLVTYLEN 837 (1190)
Q Consensus 772 K~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~i---gyPvvvKP~~~~gg~G-----------v~iv~~~~el~~~~~~ 837 (1190)
-+..+++|+++|||+|++.++.+.+|+.+.++++ ++|+|+|+.-..|||| |.++.+ +|+.+++++
T Consensus 32 EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~ 110 (422)
T PLN00124 32 EYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGK 110 (422)
T ss_pred HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHHHH
Confidence 5677899999999999999999999999999998 6999999985555555 557766 999999887
Q ss_pred hHhhC-----------CCCcEEEEEecCCcceEEEeEEecC
Q 001014 838 AVEVD-----------PERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 838 ~~~~~-----------~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
..... .-..++|+|.++.++|+-+.+..|+
T Consensus 111 il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 111 MLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 65431 1125887888878999999999996
No 197
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.20 E-value=2.8e-05 Score=91.36 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc---CCCcEEEecCCCCCCcc-----------eEEeCCHHHHHHHH
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI---GEFPLIIRPAFTLGGTG-----------GGIAYNKEEFEAIC 278 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i---g~~PvVVKP~~g~gg~G-----------v~iv~~~~el~~~~ 278 (1190)
.-+..|++|+++|||+|++..+.+.+++.+.++++ + +|+|+|+.-..||+| |.++++ +|+.+++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~-~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa 108 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDE-GEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELA 108 (422)
T ss_pred CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccC-CcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHH
Confidence 35667899999999999999999999999999988 7 999999985555444 556766 9999999
Q ss_pred HHHHhcC-----------CCCcEEEeeecCCCeeeeEEEEEeCC--CcEEEEE
Q 001014 279 KAGLAAS-----------LTSQVLVEKSLLGWKEYELEVMRDLA--DNVVIIC 318 (1190)
Q Consensus 279 ~~~~~~~-----------~~~~vlVEe~I~G~~E~sv~v~~d~~--g~~~~~~ 318 (1190)
++++... ....++|||.+...+|+-+.+..|.. |.+++++
T Consensus 109 ~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s 161 (422)
T PLN00124 109 GKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIAC 161 (422)
T ss_pred HHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEE
Confidence 9887541 12358866666655999999999963 4444443
No 198
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.19 E-value=1.1e-05 Score=83.12 Aligned_cols=142 Identities=19% Similarity=0.275 Sum_probs=78.9
Q ss_pred CCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCH-HHHHHHHHHhHhhCCCCcEEEEEecCCcc--eEEEe
Q 001014 786 QPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTD-ETLVTYLENAVEVDPERPVLIDKYLSDAI--EIDVD 862 (1190)
Q Consensus 786 ~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~-~el~~~~~~~~~~~~~~~vliEefI~~g~--E~~v~ 862 (1190)
+|++.+..+.+++.++.++.+. +|+||..+.||+||.++... ..+...++.+. .....++++|+|++.-. |.++.
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~-~~~~~~~mvQ~flp~i~~GDkRii 89 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLT-KNGERPVMVQPFLPEIKEGDKRII 89 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHT-TTTTS-EEEEE--GGGGG-EEEEE
T ss_pred CcCEEEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHH-hcCCccEEEEeccccccCCCEEEE
Confidence 5899999999999999999988 99999999999999999874 34555554432 23456899999996443 44444
Q ss_pred EEecCCCcEEEEeeeeeee----cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc--ceeEEEEEecCCCE
Q 001014 863 ALADSCGNVVIGGIMEHIE----QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCG--LMNCQYAITTSGDV 936 (1190)
Q Consensus 863 v~~d~~G~v~~~~i~e~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G--~~~ief~~d~~g~~ 936 (1190)
++ + |+.. .++...-. +...+.|...... .+++ +-+++|+++...|.-+| +.+||++- -
T Consensus 90 ~~-n--G~~~-~av~R~P~~gd~R~N~~~Gg~~~~~---~lt~----~e~~i~~~i~~~L~~~Gl~f~GiDvig-----~ 153 (173)
T PF02955_consen 90 LF-N--GEPS-HAVRRIPAKGDFRSNLAAGGSAEPA---ELTE----REREICEQIGPKLREDGLLFVGIDVIG-----D 153 (173)
T ss_dssp EE-T--TEE--SEEEEE--SS-S---GGGTSCEEEE---E--H----HHHHHHHHHHHHHHHTT--EEEEEEET-----T
T ss_pred EE-C--CEEh-HHeecCCCCCCceeeeccCCceeec---CCCH----HHHHHHHHHHHHHhhcCcEEEEEeccc-----c
Confidence 33 3 3332 22222111 1223333333322 3444 44566667777665556 45688663 2
Q ss_pred EEEEEccCC
Q 001014 937 YLLEANPRA 945 (1190)
Q Consensus 937 ~viEiNpR~ 945 (1190)
|++|||---
T Consensus 154 ~l~EiNvts 162 (173)
T PF02955_consen 154 KLTEINVTS 162 (173)
T ss_dssp EEEEEE-SS
T ss_pred ceEEEeccC
Confidence 899999743
No 199
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.16 E-value=2.4e-05 Score=84.27 Aligned_cols=106 Identities=22% Similarity=0.272 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCC-----CcceEE-eCCHHHHHHHHHHHHhcC-
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLG-----GTGGGI-AYNKEEFEAICKAGLAAS- 285 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~g-----g~Gv~i-v~~~~el~~~~~~~~~~~- 285 (1190)
+-...+++|..+|||+|++..+++.+++.++++++| ||+++|-....- --||.+ ++|++++.++++++....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig-~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~ 89 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIG-FPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVA 89 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSHHHHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhC-CCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999 999999875431 127777 889999999998886431
Q ss_pred ------CCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEe
Q 001014 286 ------LTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICS 319 (1190)
Q Consensus 286 ------~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~ 319 (1190)
....++||+.++ +..|+.+.+.+|.....++.+.
T Consensus 90 ~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G 130 (222)
T PF13549_consen 90 AHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFG 130 (222)
T ss_dssp HH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEE
T ss_pred HhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEc
Confidence 245799999999 4399999999998666655543
No 200
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.15 E-value=6.4e-05 Score=87.10 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=84.6
Q ss_pred HHHHHHHHHc-----CCCCCCeeec-CCHHHHHHHHHH---cCCCc-EEEecCCCCCCc----ceEEeCCHHHHHHHHHH
Q 001014 215 DLFKQAMKTI-----GVKTPPSGIG-NTLDECISIANE---IGEFP-LIIRPAFTLGGT----GGGIAYNKEEFEAICKA 280 (1190)
Q Consensus 215 ~~~k~~l~~~-----Gipvp~~~~v-~s~~e~~~~~~~---ig~~P-vVVKP~~g~gg~----Gv~iv~~~~el~~~~~~ 280 (1190)
+..|++|+++ |||+|+...+ ++.+++.+++++ ++ .| +||||.-..||+ ||.+++|++|+.++.++
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~-~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~ 87 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLS-STKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKE 87 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhC-CCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHH
Confidence 3456677777 9999999888 999999999888 87 64 699998777776 58899999999999999
Q ss_pred HHhcC--------CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 281 GLAAS--------LTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 281 ~~~~~--------~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
++... .-..+|||++++=.+||-+.++.|+....+++
T Consensus 88 ~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~ 132 (423)
T PLN02235 88 RLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISF 132 (423)
T ss_pred HhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence 88543 23478999999877999999999988777444
No 201
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.13 E-value=5.4e-05 Score=87.70 Aligned_cols=101 Identities=16% Similarity=0.341 Sum_probs=83.2
Q ss_pred HHHHHHHHHc-----CCCCCCceee-cCHHHHHHHHHH---hCCc-EEEecCcCCCCcc----eEEeCCHHHHHHHHHHh
Q 001014 773 ERFNAIIKEL-----SIEQPKGGIA-KSEADALAIAKE---IGYP-VVVRPSYVLGGRA----MEIVYTDETLVTYLENA 838 (1190)
Q Consensus 773 ~~~~~~l~~~-----gIp~p~~~~~-~s~~e~~~~~~~---igyP-vvvKP~~~~gg~G----v~iv~~~~el~~~~~~~ 838 (1190)
+..+++|+++ |||+|++.++ .+.+++.+++++ ++.| +||||.-..|||| |.++.|.+|+.++.++.
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~ 88 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKER 88 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHH
Confidence 4456788887 9999999988 999999999988 8875 5999988888774 89999999999998886
Q ss_pred HhhC--------CCCcEEEEEecCCcceEEEeEEecCCCcEEE
Q 001014 839 VEVD--------PERPVLIDKYLSDAIEIDVDALADSCGNVVI 873 (1190)
Q Consensus 839 ~~~~--------~~~~vliEefI~~g~E~~v~v~~d~~G~v~~ 873 (1190)
+... .-..+|||++++-.+|+-+.++.|+....++
T Consensus 89 Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii 131 (423)
T PLN02235 89 LGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSIS 131 (423)
T ss_pred hCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEE
Confidence 5432 1236899999988999999999987666533
No 202
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.09 E-value=4.3e-05 Score=78.83 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=76.6
Q ss_pred CCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCH-HHHHHHHHHHHhcCCCCcEEEeeecCCCe--eeeE
Q 001014 228 TPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNK-EEFEAICKAGLAASLTSQVLVEKSLLGWK--EYEL 304 (1190)
Q Consensus 228 vp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~-~el~~~~~~~~~~~~~~~vlVEe~I~G~~--E~sv 304 (1190)
+|++.+..+.+++.+|.++.+ . +|+||..+.||+||.++... ..+...++.+... ....+++|+|++.-+ |.++
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~-~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-~~~~~mvQ~flp~i~~GDkRi 88 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHG-D-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-GERPVMVQPFLPEIKEGDKRI 88 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHS-S-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-TTS-EEEEE--GGGGG-EEEE
T ss_pred CcCEEEECCHHHHHHHHHHCC-C-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-CCccEEEEeccccccCCCEEE
Confidence 589999999999999999999 6 99999999999999998874 4455555544333 245799999998532 4455
Q ss_pred EEEEeCCCcEEEEEeeeeeCCC-----CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh---CCccceEEEEEEEec
Q 001014 305 EVMRDLADNVVIICSIENVDPM-----GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI---GVECGGSNVQFAVNP 376 (1190)
Q Consensus 305 ~v~~d~~g~~~~~~~~e~~~~~-----g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l---g~~~G~~~vef~~~~ 376 (1190)
-++ +|..+.. +.+.... ..+.|....... +++++ ++.|.++...| |+ =++++|++-
T Consensus 89 i~~---nG~~~~a--v~R~P~~gd~R~N~~~Gg~~~~~~---lt~~e----~~i~~~i~~~L~~~Gl--~f~GiDvig-- 152 (173)
T PF02955_consen 89 ILF---NGEPSHA--VRRIPAKGDFRSNLAAGGSAEPAE---LTERE----REICEQIGPKLREDGL--LFVGIDVIG-- 152 (173)
T ss_dssp EEE---TTEE-SE--EEEE--SS-S---GGGTSCEEEEE-----HHH----HHHHHHHHHHHHHTT----EEEEEEET--
T ss_pred EEE---CCEEhHH--eecCCCCCCceeeeccCCceeecC---CCHHH----HHHHHHHHHHHhhcCc--EEEEEeccc--
Confidence 444 3554442 2222221 233444443322 55444 34444444444 54 367888762
Q ss_pred CCCcEEEEEeCC
Q 001014 377 VDGEVMVIEMNP 388 (1190)
Q Consensus 377 ~~g~~~viEiNp 388 (1190)
-|++|||-
T Consensus 153 ----~~l~EiNv 160 (173)
T PF02955_consen 153 ----DKLTEINV 160 (173)
T ss_dssp ----TEEEEEE-
T ss_pred ----cceEEEec
Confidence 27999993
No 203
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=97.86 E-value=1.1e-05 Score=74.57 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=66.3
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhC--CCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA--GYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~--G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
||||+|+|.. .+.+ +++|++. .-++++.-.||.+... +...-..+.+.+.+.++|+++++|.|
T Consensus 2 kVLviGsGgR--EHAi---------a~~l~~s~~v~~v~~aPGN~G~~~~----~~~~~~~~~d~~~l~~~a~~~~idlv 66 (100)
T PF02844_consen 2 KVLVIGSGGR--EHAI---------AWKLSQSPSVEEVYVAPGNPGTAEL----GKNVPIDITDPEELADFAKENKIDLV 66 (100)
T ss_dssp EEEEEESSHH--HHHH---------HHHHTTCTTEEEEEEEE--TTGGGT----SEEE-S-TT-HHHHHHHHHHTTESEE
T ss_pred EEEEECCCHH--HHHH---------HHHHhcCCCCCEEEEeCCCHHHHhh----ceecCCCCCCHHHHHHHHHHcCCCEE
Confidence 7999999983 3333 6777653 3467777777765332 22222356789999999999999999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhh
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDA 768 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~ 768 (1190)
++..+......+++.|+ +.| ++++||+.++.++
T Consensus 67 vvGPE~pL~~Gl~D~l~----------~~g---i~vfGP~k~aA~L 99 (100)
T PF02844_consen 67 VVGPEAPLVAGLADALR----------AAG---IPVFGPSKEAARL 99 (100)
T ss_dssp EESSHHHHHTTHHHHHH----------HTT----CEES--HHHHHH
T ss_pred EECChHHHHHHHHHHHH----------HCC---CcEECcCHHHHhc
Confidence 97666666668999999 999 9999999988754
No 204
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.68 E-value=0.0018 Score=66.32 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=98.4
Q ss_pred cHHHHHHHhcHHHHHHHH----HHc---CCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHH
Q 001014 204 KLDAIKKAEDRDLFKQAM----KTI---GVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEA 276 (1190)
Q Consensus 204 ~~~~i~~~~DK~~~k~~l----~~~---Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~ 276 (1190)
+..++-.+.||......| +++ .+|..+-....+..+.. .... ||+|||--...+|.|-.+++|..++.+
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em~---s~~~-fPvVvKvG~~h~G~GKvkv~n~~~~qD 77 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREML---SAPR-FPVVVKVGHAHAGMGKVKVDNQQDFQD 77 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGGC---S-SS-SSEEEEESS-STTTTEEEE-SHHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhhc---cCCC-CCEEEEEccccCceeEEEEccHHHHHH
Confidence 566777788886654333 333 35654444444444332 2346 999999999999999999999999988
Q ss_pred HHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHH
Q 001014 277 ICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIA 356 (1190)
Q Consensus 277 ~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~ 356 (1190)
...-+... ..-+.+|.||.-..++.+.-++ ++...+.-...-...+-++|.....--+ ++ ++.+..+..
T Consensus 78 i~sll~~~--~~Y~T~EPfId~kyDirvqkIG---~~ykA~~R~sis~nWK~N~gsa~lEqi~--~~----~ryk~Wvd~ 146 (203)
T PF02750_consen 78 IASLLAIT--KDYATTEPFIDAKYDIRVQKIG---NNYKAYMRTSISGNWKANTGSAMLEQIA--MT----ERYKLWVDE 146 (203)
T ss_dssp HHHHHHHH--TS-EEEEE---EEEEEEEEEET---TEEEEEEEEESSSTSSTTSSSEEEEEE---------HHHHHHHHH
T ss_pred HHHHHHhc--CceEEeeccccceeEEEEEEEc---CeEEEEEEccccccccccccchheeecC--CC----hHHHHHHHH
Confidence 77655544 3578999999753344444442 3444432221123345566766554322 22 344556667
Q ss_pred HHHHhCCccceEEEEEEEecCCCcEEEEEeC
Q 001014 357 IIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387 (1190)
Q Consensus 357 i~~~lg~~~G~~~vef~~~~~~g~~~viEiN 387 (1190)
+.+.+|-- .+|.||.+... +|+-|++|+|
T Consensus 147 ~s~lfGGl-DI~~v~ai~~k-dGke~Iievn 175 (203)
T PF02750_consen 147 CSELFGGL-DICAVDAIHGK-DGKEYIIEVN 175 (203)
T ss_dssp HGGGGG---SEEEEEEEEET-TS-EEEEEEE
T ss_pred HHHHcCCc-cEEEEEEEEcC-CCCEEEEEec
Confidence 77778553 79999999997 9999999999
No 205
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=97.63 E-value=0.00019 Score=84.84 Aligned_cols=113 Identities=27% Similarity=0.387 Sum_probs=81.1
Q ss_pred CceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccC------C-----CCcHHhH-------
Q 001014 1042 GTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHE------G-----RPHAGDM------- 1103 (1190)
Q Consensus 1042 g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e------~-----~~~~~~~------- 1103 (1190)
.++|+|+.+ |+.+.++++.|.++||+|++|.||+++|+++||+|+.|.++.. | +|.|.--
T Consensus 5 ~~aLISVsD--K~~iv~lAk~L~~lGfeI~AT~GTak~L~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa~r~~ 82 (513)
T PRK00881 5 KRALISVSD--KTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARRDN 82 (513)
T ss_pred CEEEEEEeC--cccHHHHHHHHHHCCCEEEEcchHHHHHHHCCCeeEEeecccCCchhcCCccccCCchhhhhhccCCCC
Confidence 458999987 8889999999999999999999999999999999999998731 2 2322211
Q ss_pred ------HH---cCcEEEEE-EcCC-C----C-CCC------Ccc--cHHHHHHHHH--CCCcEEccHHHHHHHHHHHHh
Q 001014 1104 ------VA---NGQIQMMV-ITSS-G----D-SLD------QID--GLKLRRRGLA--YKVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1104 ------i~---~~~i~lvi-nt~~-~----~-~~~------~~d--~~~iRr~A~~--~~ip~~T~~~~a~a~~~al~~ 1156 (1190)
++ -..||||| |... . + +.+ .-| |-.+=|+|.+ ..|.++++++.-..+++.|+.
T Consensus 83 ~~h~~~l~~~~i~~IDlVvvNLYPF~~tv~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~Vv~dp~dY~~v~~~l~~ 161 (513)
T PRK00881 83 PEHVAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIENIDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELKA 161 (513)
T ss_pred HHHHHHHHHcCCCceeEEEEeCcChHHHhccCCCCHHHHHhcccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh
Confidence 21 24599776 5532 1 1 110 112 4444445544 479999999999999998874
No 206
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=97.58 E-value=5.3e-06 Score=80.37 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=68.6
Q ss_pred CEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-------Ccc--eEEECCCCHH---
Q 001014 93 RKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPG-------LAD--RTYITPMTPE--- 157 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-------~ad--~~~i~p~~~~--- 157 (1190)
|||.||-||. +.||| .||+.++++|.+.+|+|+.+.-+.+..+.... ..+ .....+....
T Consensus 1 m~v~vlfGG~-----S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (117)
T PF01820_consen 1 MRVAVLFGGR-----SSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISAS 75 (117)
T ss_dssp EEEEEEEETS-----STTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEE
T ss_pred CeEEEEeccC-----chhHHHHHHHHHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhcccccccccccc
Confidence 4899999885 89999 57999999999999999988766554211000 000 0000000000
Q ss_pred HHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCC
Q 001014 158 LVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGA 203 (1190)
Q Consensus 158 ~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~ 203 (1190)
..........+|.|+|.++|..+++..+ |++|+.+|+|++|+
T Consensus 76 ~~~~~~~~~~~DvvFp~lHG~~GEDG~i----Qglle~~~iPYvG~ 117 (117)
T PF01820_consen 76 LIEKNEQKLEVDVVFPVLHGPNGEDGTI----QGLLELLGIPYVGC 117 (117)
T ss_dssp ETTESTTCTTCSEEEEECCSTTTSSSHH----HHHHHHTT-EBSSS
T ss_pred ccccccccccCCEEEEeccCCCCcccHH----HHHHHHcCCCCcCC
Confidence 0000001457999999999999999999 99999999999984
No 207
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.57 E-value=0.0021 Score=70.49 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=106.5
Q ss_pred HHHhhccCHHHHHHHHHHcC---CCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHH---HHHHHH
Q 001014 764 DSIDAAEDRERFNAIIKELS---IEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETL---VTYLEN 837 (1190)
Q Consensus 764 ~~i~~~~DK~~~~~~l~~~g---Ip~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el---~~~~~~ 837 (1190)
.....+.||...|+++++.+ .-.|-..+.++.+++. ...+.-++|+||..++|+..+....+.-+. ...+..
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~ 90 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNR 90 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceeecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHH
Confidence 34567899999999999986 3334456667777664 235667899999999998777765543332 222222
Q ss_pred hHhh------------CCCCcEEEEEecCCc-----ceEEEeEEecCCCcEEEEeeeeeee---cc--------cccccc
Q 001014 838 AVEV------------DPERPVLIDKYLSDA-----IEIDVDALADSCGNVVIGGIMEHIE---QA--------GVHSGD 889 (1190)
Q Consensus 838 ~~~~------------~~~~~vliEefI~~g-----~E~~v~v~~d~~G~v~~~~i~e~~~---~~--------g~~~gd 889 (1190)
.+.. .-...++||++++.. .+|-+-++ +|++..+.+..... .. .... .
T Consensus 91 wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~-~ 166 (239)
T PF14305_consen 91 WLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPF-R 166 (239)
T ss_pred HhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEEEEEeCCCCCeEEEEECcccCCCcc-c
Confidence 1110 012469999999432 23444443 24444333321100 00 0000 0
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 890 SACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 890 ~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
.........-.++..++|.++|+++.+.+. .++|||.. .+|++|+=|+-..+++.
T Consensus 167 ~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~-~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 167 SDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYN-VDGKIYFGELTFTPGAG 221 (239)
T ss_pred cCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEE-eCCcEEEEeeecCCCCc
Confidence 000011112335577889999999888865 57999998 89999999999998775
No 208
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.52 E-value=0.0019 Score=70.85 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=105.4
Q ss_pred HHHHHhcHHHHHHHHHHcC---CCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHH---HHHHHHHH
Q 001014 207 AIKKAEDRDLFKQAMKTIG---VKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKE---EFEAICKA 280 (1190)
Q Consensus 207 ~i~~~~DK~~~k~~l~~~G---ipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~---el~~~~~~ 280 (1190)
....+.||+..|+.+++.+ .-+|-..+.++.+++.- +.+. .++||||..|+|+..+....+.- ++...+..
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~~--~~Lp-~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~ 90 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDIDF--DSLP-DKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNR 90 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceeecCCChhhhhh--hcCC-CCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHH
Confidence 4567899999999999986 33455566666665542 3566 78999999999988777655433 33333333
Q ss_pred HHhcC------------CCCcEEEeeecCCC-----eeeeEEEEEeCCCcEEEEEee-e--------eeCCC--Cccc-c
Q 001014 281 GLAAS------------LTSQVLVEKSLLGW-----KEYELEVMRDLADNVVIICSI-E--------NVDPM--GVHT-G 331 (1190)
Q Consensus 281 ~~~~~------------~~~~vlVEe~I~G~-----~E~sv~v~~d~~g~~~~~~~~-e--------~~~~~--g~~~-g 331 (1190)
.++.. -...+|||++|.-. .+|-+.++. |.+.++... . .++.. .... +
T Consensus 91 wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~ 167 (239)
T PF14305_consen 91 WLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRS 167 (239)
T ss_pred HhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeCCCCCeEEEEECcccCCCcccc
Confidence 22211 14689999999842 356666663 444433221 1 11111 0010 1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 332 DSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 332 ~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
..- ..+.. --++..++|.++|.++.+.+ .+++|||... +|++||-|+...+++.
T Consensus 168 ~~~-~~~~~-~kP~~l~emi~iA~~Ls~~f----~fvRVDlY~~--~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 168 DYP-PDEDI-PKPKNLEEMIEIAEKLSKGF----PFVRVDLYNV--DGKIYFGELTFTPGAG 221 (239)
T ss_pred CCC-CCCCC-CCChhHHHHHHHHHHHccCC----CEEEEEEEEe--CCcEEEEeeecCCCCc
Confidence 100 11111 23445677777777776653 5679999998 7899999999777764
No 209
>PLN02891 IMP cyclohydrolase
Probab=97.31 E-value=0.00079 Score=79.13 Aligned_cols=117 Identities=30% Similarity=0.445 Sum_probs=83.2
Q ss_pred CCCCC--ceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc---C---C-----CCcHHhHH
Q 001014 1038 LPLSG--TVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH---E---G-----RPHAGDMV 1104 (1190)
Q Consensus 1038 ~p~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~---e---~-----~~~~~~~i 1104 (1190)
.|..| +.++|+.| |.-+.+.++.|.++|++|++|.||+++|+++||++..|..+. | | ||.|.--|
T Consensus 17 ~~~~~~krALISVsD--Ktgi~~fAk~L~~~gveIiSTgGTak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGI 94 (547)
T PLN02891 17 SPSSGKKQALISLSD--KTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPAVHGGI 94 (547)
T ss_pred CCCccccEEEEEEec--ccCHHHHHHHHHHCCCEEEEcchHHHHHHHcCCceeeHHhccCCchhhCCcccccCchhhhhh
Confidence 35554 47888876 667999999999999999999999999999999999887652 1 2 24332222
Q ss_pred -------------Hc---CcEEEEE-EcCC-C----C-CCC------C--cccHHHHHHHHHC--CCcEEccHHHHHHHH
Q 001014 1105 -------------AN---GQIQMMV-ITSS-G----D-SLD------Q--IDGLKLRRRGLAY--KVPVITTVSGALANA 1151 (1190)
Q Consensus 1105 -------------~~---~~i~lvi-nt~~-~----~-~~~------~--~d~~~iRr~A~~~--~ip~~T~~~~a~a~~ 1151 (1190)
++ ..||||| |+.. . + +.. . --|-.|=|+|.++ .|.++++++--..++
T Consensus 95 La~r~~~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP~DY~~vl 174 (547)
T PLN02891 95 LARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDPADYPALL 174 (547)
T ss_pred hcCCCCHHHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCHHHHHHHH
Confidence 22 3499766 5522 1 1 110 1 1266666666666 899999999999999
Q ss_pred HHHHh
Q 001014 1152 EAIRS 1156 (1190)
Q Consensus 1152 ~al~~ 1156 (1190)
+.|+.
T Consensus 175 ~el~~ 179 (547)
T PLN02891 175 EYLKG 179 (547)
T ss_pred HHHHc
Confidence 88864
No 210
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=97.28 E-value=0.00041 Score=65.59 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred cccCCCCc-cccCCcCeEEe-eec---eeeecccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCC
Q 001014 424 DITKKTPA-SFEPSIDYVVT-KIP---RFAFEKFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGC 496 (1190)
Q Consensus 424 ~i~~~~~~-~f~p~~~~v~~-k~p---~~~~~~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~ 496 (1190)
++..++|. .|.|+.+.+.. ..| ...++........+.+.+++ +++||+.|.|+++|++|+.++|+ +.+.|+.+
T Consensus 3 Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv~T 82 (107)
T PF02785_consen 3 RIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEGVKT 82 (107)
T ss_dssp EEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESSSH
T ss_pred EEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEECccC
Confidence 35566775 49999985542 333 11111111224567778887 99999999999999999999996 78888766
Q ss_pred CCCCCCCCCHHHHHhHhcCCC
Q 001014 497 SNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 497 ~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
| .+.|...|.+|.
T Consensus 83 N--------i~fl~~ll~~~~ 95 (107)
T PF02785_consen 83 N--------IPFLRALLAHPE 95 (107)
T ss_dssp S--------HHHHHHHHTSHH
T ss_pred C--------HHHHHHHhCCcc
Confidence 5 578888888875
No 211
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.24 E-value=0.0098 Score=61.13 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=95.7
Q ss_pred CHHHHhhccCHHHHHHH----HHHc---CCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHH
Q 001014 762 SPDSIDAAEDRERFNAI----IKEL---SIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTY 834 (1190)
Q Consensus 762 ~~~~i~~~~DK~~~~~~----l~~~---gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~ 834 (1190)
+..++-.+.||-+...- .+++ .+|..+-....+..+.. ....||+|||--...+|.|=.+|+|..++.+.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em~---s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi 78 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREML---SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDI 78 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGGC---S-SSSSEEEEESS-STTTTEEEE-SHHHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhhc---cCCCCCEEEEEccccCceeEEEEccHHHHHHH
Confidence 45566677777654433 3344 35655545555555443 34579999999999999999999999988765
Q ss_pred HHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee-ecccccccccccccCCCCCCHHHHHHHHHHHHH
Q 001014 835 LENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI-EQAGVHSGDSACMIPTKTISSSCLDTISSWTIK 913 (1190)
Q Consensus 835 ~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~-~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~ 913 (1190)
..-.... ..-+.+|.||+.-.++.++-+.+ +...+- ...+ ..+.-..|.+..--- +.-++.+.++.+
T Consensus 79 ~sll~~~--~~Y~T~EPfId~kyDirvqkIG~---~ykA~~-R~sis~nWK~N~gsa~lEqi------~~~~ryk~Wvd~ 146 (203)
T PF02750_consen 79 ASLLAIT--KDYATTEPFIDAKYDIRVQKIGN---NYKAYM-RTSISGNWKANTGSAMLEQI------AMTERYKLWVDE 146 (203)
T ss_dssp HHHHHHH--TS-EEEEE---EEEEEEEEEETT---EEEEEE-EEESSSTSSTTSSSEEEEEE---------HHHHHHHHH
T ss_pred HHHHHhc--CceEEeeccccceeEEEEEEEcC---eEEEEE-Eccccccccccccchheeec------CCChHHHHHHHH
Confidence 5433322 34679999996666777777654 222211 1111 011111222211111 123677788888
Q ss_pred HHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 914 LAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 914 i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
+.+.+|---++.++.+..+||+-|++|+|-
T Consensus 147 ~s~lfGGlDI~~v~ai~~kdGke~Iievnd 176 (203)
T PF02750_consen 147 CSELFGGLDICAVDAIHGKDGKEYIIEVND 176 (203)
T ss_dssp HGGGGG--SEEEEEEEEETTS-EEEEEEE-
T ss_pred HHHHcCCccEEEEEEEEcCCCCEEEEEecC
Confidence 999997668999999999999999999995
No 212
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=97.19 E-value=0.00039 Score=81.66 Aligned_cols=112 Identities=23% Similarity=0.363 Sum_probs=80.3
Q ss_pred ceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc------CC-----CCcH-----------
Q 001014 1043 TVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH------EG-----RPHA----------- 1100 (1190)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~------e~-----~~~~----------- 1100 (1190)
++|+|+.+ |+.+.++++.|.++||+|++|.||+++|+++||+|+.|.++. +| ||.|
T Consensus 2 raLISVsD--K~~iv~lAk~L~~lGfeIiATgGTak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~ 79 (511)
T TIGR00355 2 RALLSVSD--KTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDD 79 (511)
T ss_pred EEEEEEeC--cccHHHHHHHHHHCCCEEEEechHHHHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCch
Confidence 47889888 888999999999999999999999999999999999999873 12 2322
Q ss_pred -HhHHHcC---cEEEEE-EcCC-C----C-CCC------Ccc--cH-HHHHHHHHC-CCcEEccHHHHHHHHHHHHh
Q 001014 1101 -GDMVANG---QIQMMV-ITSS-G----D-SLD------QID--GL-KLRRRGLAY-KVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1101 -~~~i~~~---~i~lvi-nt~~-~----~-~~~------~~d--~~-~iRr~A~~~-~ip~~T~~~~a~a~~~al~~ 1156 (1190)
...+++. .||||| |+.. . + +.+ .-| |- .||-+|-.| .|.++++++--..+++.|+.
T Consensus 80 ~~~~l~~~~I~~IDlVvvNLYPF~~tv~~~~~~~~e~IEnIDIGGptmlRaAAKN~~~V~Vv~dp~dY~~vl~el~~ 156 (511)
T TIGR00355 80 DDADLEEHGIEPIDLVVVNLYPFKETVAKPGVTLAEAVENIDIGGPTMLRAAAKNHADVTILVDPKDYSAILSELDE 156 (511)
T ss_pred HHHHHHHcCCCceeEEEEeccChHHHhccCCCCHHHHHHhccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh
Confidence 2223332 489877 4422 1 1 110 112 44 455555554 68999999999999888864
No 213
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=97.17 E-value=0.0022 Score=62.63 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHHH--CCCeeeeccccHHHHHHc-CCceEEEecccC-CCCcHHhHHHcCcEEEEEEcCCC--CCCCC
Q 001014 1050 DLTKPHLERIAKAFLD--IGFKIVSTSGTAHFLELK-GIAVERVLKMHE-GRPHAGDMVANGQIQMMVITSSG--DSLDQ 1123 (1190)
Q Consensus 1050 ~~~~~~~~~~~~~~~~--~g~~i~a~~gt~~~l~~~-g~~~~~v~~~~e-~~~~~~~~i~~~~i~lvint~~~--~~~~~ 1123 (1190)
|..|+.+.+.+..-.+ -++.++||..|...+++. |++++++.--.- |...|-.+|.+|+||+||-..+. .+...
T Consensus 11 D~kK~~l~~f~~~~~~~L~~h~L~ATgTTG~~i~~~tgL~V~~~~SGplGGDqQIga~Ia~g~id~vIFf~DPl~~~phe 90 (143)
T TIGR00160 11 DKKKQDLVNFVQQHKPLLSQHDLYATGTTGNLISRATGLNINAMLSGPMGGDQQIGALIAEGKIDAVIFFWDPLNAQPHE 90 (143)
T ss_pred ccchHHHHHHHHHHHHHHcCCCEEECccHHHHHHHHHCCCeEEeccCCccHHHHHHHHHHhCCCCEEEEecCCCCCCCCC
Confidence 3456777776643222 268899999999888775 898887653333 35689999999999999998653 33325
Q ss_pred cccHHHHHHHHHCCCcEEccHHHHHHHHHHHH
Q 001014 1124 IDGLKLRRRGLAYKVPVITTVSGALANAEAIR 1155 (1190)
Q Consensus 1124 ~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~ 1155 (1190)
.|=..+=|.|.-|+||+=||+.||.+++.++-
T Consensus 91 pDi~aLlRlc~v~nIP~AtN~aTA~~li~~~~ 122 (143)
T TIGR00160 91 PDVKALLRLCTVWNIPLATNVATADFLIKSPH 122 (143)
T ss_pred cCHHHHHHHHHhhCcccccCHHHHHHHHhCcc
Confidence 67777889999999999999999999999873
No 214
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0071 Score=57.01 Aligned_cols=110 Identities=20% Similarity=0.289 Sum_probs=79.8
Q ss_pred eeecCCCChhHHHHHHHH---HHHCCCeeeeccccHHHHHH-cCCceEEEeccc-CCCCcHHhHHHcCcEEEEEEcCCC-
Q 001014 1045 FLSLNDLTKPHLERIAKA---FLDIGFKIVSTSGTAHFLEL-KGIAVERVLKMH-EGRPHAGDMVANGQIQMMVITSSG- 1118 (1190)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~---~~~~g~~i~a~~gt~~~l~~-~g~~~~~v~~~~-e~~~~~~~~i~~~~i~lvint~~~- 1118 (1190)
++..+ ..|+.+...++. +.. .+.++||..|...+++ -|+++.++.--. -|...|--+|.+|+||++|-.-+.
T Consensus 9 LIAHD-~kK~~lv~f~~~~~~~L~-~h~L~ATGTTG~~i~~atgL~v~~~~SGPmGGDQQiGa~Iaeg~id~lIFf~DPL 86 (142)
T COG1803 9 LIAHD-HKKDDLVNFVQAHKELLS-RHDLYATGTTGGLIQEATGLNVHRLKSGPMGGDQQIGALIAEGKIDVLIFFWDPL 86 (142)
T ss_pred EEecc-hhHHHHHHHHHHHHHHhh-hceEEEecCchHHHHHHhCCceEEeecCCCCccHHHHHHHhcCcceEEEEEecCC
Confidence 33433 345666665532 333 5889999888877765 499888764221 245789999999999999988443
Q ss_pred -CCCCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHHh
Q 001014 1119 -DSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1119 -~~~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~ 1156 (1190)
.+....|=..+=|.|.=++||+=||..||+.+++++..
T Consensus 87 taqPHdpDVkAL~Rl~~V~nIP~A~N~aTAe~li~~~~~ 125 (142)
T COG1803 87 TAQPHDPDVKALLRLATVYNIPVATNRATAEFLIKSLLF 125 (142)
T ss_pred CCCCCCcCHHHHHHHHHhhcccchhhHhHHHHHHhcccc
Confidence 33224566778899999999999999999999998753
No 215
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=96.95 E-value=0.0019 Score=61.21 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=58.4
Q ss_pred ccCCCC-ccccCCcCeEEe-eece---eeecccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCC
Q 001014 425 ITKKTP-ASFEPSIDYVVT-KIPR---FAFEKFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCS 497 (1190)
Q Consensus 425 i~~~~~-~~f~p~~~~v~~-k~p~---~~~~~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~ 497 (1190)
++.++| ..|.|+.+.+.. ..|. ..++........+++.+++ ++++|+.|.|+++|++|+.++|+ +.+.|+.+|
T Consensus 4 i~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN 83 (107)
T smart00878 4 INAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGVKTN 83 (107)
T ss_pred EEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECccCC
Confidence 455666 358899996642 3331 1111111123456666776 89999999999999999999996 778886554
Q ss_pred CCCCCCCCHHHHHhHhcCCC
Q 001014 498 NVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 498 ~~~~~~~~~~~l~~~l~~~~ 517 (1190)
.+.|...|.+|.
T Consensus 84 --------~~~l~~ll~~~~ 95 (107)
T smart00878 84 --------IPFLRALLRHPD 95 (107)
T ss_pred --------HHHHHHHhcCHh
Confidence 567788888875
No 216
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=96.88 E-value=0.0012 Score=75.18 Aligned_cols=52 Identities=21% Similarity=0.469 Sum_probs=28.5
Q ss_pred cEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC-----CcceEEEeEE
Q 001014 808 PVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS-----DAIEIDVDAL 864 (1190)
Q Consensus 808 PvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~-----~g~E~~v~v~ 864 (1190)
-.|+||..+..|+|+.++.+.+++.+. ......+++||+||+ .|+-+++.++
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~~PlLi~grKFDlR~y 123 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIENPLLIDGRKFDLRVY 123 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--SSB--BTTB-EEEEEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccCCCeEEeeeeEEEEEE
Confidence 389999999999999999999887643 123467899999995 3565555543
No 217
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.74 E-value=0.0044 Score=58.78 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhCCCeEEEecCC-CCCcCccccCCcceeecCCc----HHHHHHHhhhcCCCccccccCCchhhhhhhhH
Q 001014 664 YCCCHTSFSLQSAGYETIMMNSN-PETVSTDYDTSDRLYFEPLT----VEDVLNVIDLERPEGIIVQFGGQTPLKLSLPI 738 (1190)
Q Consensus 664 ~~~~~~~~al~~~G~~vi~v~~~-p~~~s~~~~~ad~~~~~p~~----~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l 738 (1190)
||+.++..-+++.|++++++... .+..-..|.+.|+++....- -+++.+-..+. ++|++-++.....-=.+.+
T Consensus 7 HSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~--N~I~VPhgSfv~Y~G~d~i 84 (124)
T PF06849_consen 7 HSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREM--NAIFVPHGSFVAYVGYDRI 84 (124)
T ss_dssp TTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHT--TEEE--BTTHHHHH-HHHH
T ss_pred hHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHC--CeEEecCCCeeEeecHHHH
Confidence 77999999999999999987543 33344456688887753311 23444444333 4666667755443223333
Q ss_pred HhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc
Q 001014 739 HQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG 789 (1190)
Q Consensus 739 ~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~ 789 (1190)
++ +.. +|++| +...++...|+...+.+|+++|||.|+.
T Consensus 85 e~---------~~~---vP~FG-NR~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 85 EN---------EFK---VPIFG-NRNLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp HH---------T-S---S-EES--CCGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred hh---------cCC---CCeec-ChHHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 30 366 99999 6778888889999999999999999975
No 218
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=96.73 E-value=0.011 Score=67.46 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=24.3
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL 297 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~ 297 (1190)
-+|+||..++.|+|+.++++.+++.+. .......++||+||+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--S
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccC
Confidence 499999999999999999999988754 223367899999997
No 219
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.44 E-value=0.0072 Score=57.38 Aligned_cols=112 Identities=17% Similarity=0.258 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEccCC-CCCCCCccCcceEEECC-CC---HHHHHHHHHHcCCCEEEecCCChhHHHHHHHH
Q 001014 113 YSGTQACKALKEEGYEVILINSNP-ATIMTDPGLADRTYITP-MT---PELVEQVLEKERPDALLPTMGGQTALNLAVAL 187 (1190)
Q Consensus 113 ~sg~~~~~al~~~G~~vi~v~~~~-~~~~~~~~~ad~~~i~p-~~---~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l 187 (1190)
||+.++++-++++|++++++.... ...-......|+.++.. +. .+.+.+-+.+ -++|+ ..+|-....+..
T Consensus 7 HSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~--~N~I~-VPhgSfv~Y~G~-- 81 (124)
T PF06849_consen 7 HSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLRE--MNAIF-VPHGSFVAYVGY-- 81 (124)
T ss_dssp TTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHH--TTEEE---BTTHHHHH-H--
T ss_pred hHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHH--CCeEE-ecCCCeeEeecH--
Confidence 679999999999999999987543 22222234778876433 32 1233333332 35555 334445555554
Q ss_pred HHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee
Q 001014 188 AESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG 232 (1190)
Q Consensus 188 ~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~ 232 (1190)
..+-.+..+|++|+ ...++...|+..-+++|+++|||.|+..
T Consensus 82 --d~ie~~~~vP~FGN-R~lLrwEseR~~~~~lL~~AgI~~P~~~ 123 (124)
T PF06849_consen 82 --DRIENEFKVPIFGN-RNLLRWESERDKERNLLEKAGIPMPRKF 123 (124)
T ss_dssp --HHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred --HHHhhcCCCCeecC-hHHHHhhhhhhhHHHHHHHcCCCCCccC
Confidence 33334488999984 4455555599999999999999999853
No 220
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.37 E-value=0.04 Score=65.14 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=97.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcc-eEEECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD-RTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..+|.|+---. .+-..|| ....+.+.+.|++++++++..-.. .+ +.|......|.|-+.+-- .=
T Consensus 185 ~P~IAIvDf~~--~~~~~Ef----~~f~~~f~~~G~~~vI~d~~~L~y------~~g~L~~~~~~ID~VyRR~Vt---~e 249 (445)
T PF14403_consen 185 KPNIAIVDFLE--YPTLSEF----EVFQRLFEEHGYDCVICDPRDLEY------RDGRLYAGGRPIDAVYRRFVT---SE 249 (445)
T ss_pred CCcEEEEeccc--CCccchH----HHHHHHHHHcCCceEecChHHcee------cCCEEEECCEeeehhhHhhhh---HH
Confidence 45787775332 2236777 356688899999999998754432 22 223322222222211110 00
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHH----------------HHHcCCCCCCeeec
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQA----------------MKTIGVKTPPSGIG 234 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~----------------l~~~Gipvp~~~~v 234 (1190)
++...++..++-.| ...-.+.++ ++-...++.||..|.-+ .++| +|.+..+
T Consensus 250 ~l~~~d~~~~li~A--------y~~~av~~v--gsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H---vP~T~~l 316 (445)
T PF14403_consen 250 LLERYDEVQPLIQA--------YRDGAVCMV--GSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH---VPWTRLL 316 (445)
T ss_pred hhhccccchHHHHH--------HhcCCeEEe--cchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh---CCceEEE
Confidence 11111111111111 111224444 23344555556555433 3333 5667666
Q ss_pred CC--------HHHHHHHHHHcCCCcEEEecCCCCCCcceEE--eCCHHHHHHHHHHHHhcCCCCcEEEeeecCC
Q 001014 235 NT--------LDECISIANEIGEFPLIIRPAFTLGGTGGGI--AYNKEEFEAICKAGLAASLTSQVLVEKSLLG 298 (1190)
Q Consensus 235 ~s--------~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~i--v~~~~el~~~~~~~~~~~~~~~vlVEe~I~G 298 (1190)
+. .-++.+++..-. --+|+||.++.||+||.+ =.++++++++++++... ++|+|||+.-
T Consensus 317 ~~~~~~~~g~~~dL~~~~~a~r-~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~----~yilQe~v~~ 385 (445)
T PF14403_consen 317 TAGRTTYQGEDVDLVEFAIANR-DRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAARE----PYILQEYVRP 385 (445)
T ss_pred cCccccccccchhHHHHHHhch-hcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcC----CcEEEEEecC
Confidence 65 234444443444 479999999999999987 56889999999987654 7999999987
No 221
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.15 E-value=0.082 Score=53.91 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=63.1
Q ss_pred CcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeee-----eCCC-----------Ccccc-cEEEEecCCCCCHHHHHHH
Q 001014 288 SQVLVEKSLLGWKEYELEVMRDLADNVVIICSIEN-----VDPM-----------GVHTG-DSITVAPAQTLTDKEYQRL 350 (1190)
Q Consensus 288 ~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~-----~~~~-----------g~~~g-~~~~~~Pa~~l~~~~~~~l 350 (1190)
.++.||||+-| ..+.+..+...--+-+-+..+++ .|.. ++... -.+-..|.- +-+....++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGGHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhhHHHH
Confidence 57999999999 78888887765444443333322 1210 01110 111224553 666777788
Q ss_pred HHHHHHHHHHh------CCccceEEEEEEEecCCCcEEEEEeCCCCCCchH
Q 001014 351 RDYSIAIIREI------GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA 395 (1190)
Q Consensus 351 ~~~a~~i~~~l------g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~ 395 (1190)
-+++.+++++. |+ .|++.+|.++++ +.++++.|+.||+.+++.
T Consensus 99 fe~ge~fV~a~k~l~~PG~-iGPFcLq~ivt~-dle~vvfevS~RI~gGTN 147 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGM-IGPFCLQSIVTD-DLEFVVFEVSARIVGGTN 147 (188)
T ss_dssp HHHHHHHHHHHHHHSTT----EEEEEEEEE-T-TSSEEEEEEESSB-GGGG
T ss_pred HHHHHHHHHHHHHhcCCCc-cccceEEEEEcC-CceEEEEEEeccccCCCC
Confidence 88888877765 78 599999999998 899999999999999653
No 222
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.011 Score=58.05 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=61.1
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.+|-|||...|++.+...+.....|.+|.+ +.+..+++|++.+.++++.+.++|++ |+|.+|.++||-
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye--~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLP 72 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYE--VRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLP 72 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeE--EEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcc
Confidence 568899999999998888888888999888 66668999999999999999999997 999999999983
No 223
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.12 E-value=0.097 Score=58.01 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=78.2
Q ss_pred CEEEEEcC-CccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC-cceEEECCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGL-ADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~-G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
++|||+|| |. |+.+++.|.+.|++|+............... ...+....++.+.+.++++++++|+
T Consensus 1 m~ILvlGGT~e------------gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVD------------SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDI 68 (256)
T ss_pred CeEEEEechHH------------HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCE
Confidence 47999998 52 8899999999999999876655432221221 3356678889999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE 246 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ 246 (1190)
|+-..+.. +..+.. .-..++++.|++++= ..+.. . .+.+.+..+.|.+++.+.+.+
T Consensus 69 VIDAtHPf-A~~is~--~a~~a~~~~~ipylR-------~eR~~---------~-~~~~~~~~v~~~~ea~~~~~~ 124 (256)
T TIGR00715 69 LVDATHPF-AAQITT--NATAVCKELGIPYVR-------FERPP---------L-ALGKNIIEVPDIEEATRVAYQ 124 (256)
T ss_pred EEEcCCHH-HHHHHH--HHHHHHHHhCCcEEE-------EECCC---------C-CCCCCeEEeCCHHHHHHHhhh
Confidence 99777621 111111 112467777888771 11110 0 133455667777776665543
No 224
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.93 E-value=0.13 Score=56.64 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=65.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d~ 170 (1190)
+++|||+||= .| |+.+++.|.+.|+++++.-....... ....-......+ +.+.+.++++++++++
T Consensus 2 ~~~IlvlgGT-------~e----gr~la~~L~~~g~~v~~Svat~~g~~--~~~~~~v~~G~l~~~~~l~~~l~~~~i~~ 68 (248)
T PRK08057 2 MPRILLLGGT-------SE----ARALARALAAAGVDIVLSLAGRTGGP--ADLPGPVRVGGFGGAEGLAAYLREEGIDL 68 (248)
T ss_pred CceEEEEech-------HH----HHHHHHHHHhCCCeEEEEEccCCCCc--ccCCceEEECCCCCHHHHHHHHHHCCCCE
Confidence 3589999974 33 89999999999998887644333221 223445678899 9999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
|+=..+.. +..+.... ..++++.|++++
T Consensus 69 VIDATHPf-A~~is~~a--~~ac~~~~ipyi 96 (248)
T PRK08057 69 VIDATHPY-AAQISANA--AAACRALGIPYL 96 (248)
T ss_pred EEECCCcc-HHHHHHHH--HHHHHHhCCcEE
Confidence 99777632 22222111 246777777776
No 225
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=95.72 E-value=0.072 Score=54.31 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=66.4
Q ss_pred CcEEEEEecCCcceEEEeEEecC-CCcEEEEeeeeeeeccccccccccccc-------------------CCCCCCHHHH
Q 001014 845 RPVLIDKYLSDAIEIDVDALADS-CGNVVIGGIMEHIEQAGVHSGDSACMI-------------------PTKTISSSCL 904 (1190)
Q Consensus 845 ~~vliEefI~~g~E~~v~v~~d~-~G~v~~~~i~e~~~~~g~~~gd~~~~~-------------------p~~~l~~~~~ 904 (1190)
....||||+ -|..+-+..+... .+++-+.++-...+.. +. ...-+ -|..+-+..+
T Consensus 21 ~~~~IeEyv-iG~~~~~~yFySpi~~~~Ellg~D~R~esn-~D---g~~RlPa~~Ql~~~~~p~~vvvGn~p~vlRESLL 95 (188)
T PF06973_consen 21 ENAIIEEYV-IGVPFYFHYFYSPIKDRVELLGIDRRYESN-ID---GLVRLPAKQQLELNIEPSYVVVGNIPAVLRESLL 95 (188)
T ss_dssp CCEEEEE----SEEEEEEEEEETTTTEEEEEEEEEEEEEE-TC---CCCCS-HHHHHCCT----EEEEEEEEEEE-GGGH
T ss_pred cccEEEEEe-cCceEEEeeecccccCceeeeeeeeEEEec-ch---hhhcCCcHHHhccCCCCceEEECCcccchhHhhH
Confidence 578999999 8988888888754 5567677765554431 11 11111 1225667888
Q ss_pred HHHHHHHHHHHHHc------CCCcceeEEEEEecCCCEEEEEEccCCCCCh
Q 001014 905 DTISSWTIKLAKRL------NVCGLMNCQYAITTSGDVYLLEANPRASRTV 949 (1190)
Q Consensus 905 ~~i~~~a~~i~~~L------g~~G~~~ief~~d~~g~~~viEiNpR~~~s~ 949 (1190)
+++.++..+++++. |+.|+|.+|.+++++.++++.|+.+|..+..
T Consensus 96 ~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gGT 146 (188)
T PF06973_consen 96 PKVFEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGGT 146 (188)
T ss_dssp HHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCCC
Confidence 89999888888765 7889999999998899999999999998853
No 226
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.035 Score=61.22 Aligned_cols=204 Identities=14% Similarity=0.158 Sum_probs=116.9
Q ss_pred HHHcCCCEEEecCCChhHHHHHH--HHHH-hhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH----HHcC---CCCCCee
Q 001014 163 LEKERPDALLPTMGGQTALNLAV--ALAE-SGALEKYGVELIGAKLDAIKKAEDRDLFKQAM----KTIG---VKTPPSG 232 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~--~l~~-~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l----~~~G---ipvp~~~ 232 (1190)
.+..+||+|+..-+. ..++. .+.. ---+...|++.+ ++..++-...||...+.-| ...| +|..+-.
T Consensus 151 ~RsfkPdfVlirqhA---~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt 226 (488)
T KOG3895|consen 151 VRSFKPDFVLIRQHA---FSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQT 226 (488)
T ss_pred eeeccCCEEEEcccc---hhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceee
Confidence 356689999876542 11210 0000 113566799998 7888888888887655444 4455 5543333
Q ss_pred ecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCC
Q 001014 233 IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLAD 312 (1190)
Q Consensus 233 ~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g 312 (1190)
...+-.+ ....-. ||+|||--.+..|.|-.+|+|.+|+.....-..-. ...+-+|.||+-.-++.++-++...
T Consensus 227 ~yPnHK~---m~s~~t-yPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~--~Tyat~epFiDaKYDiriQKIG~nY- 299 (488)
T KOG3895|consen 227 FYPNHKE---MLSQPT-YPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT--KTYATAEPFIDAKYDIRIQKIGHNY- 299 (488)
T ss_pred ecCCchh---hccCCC-CcEEEEecccccccceeeecchhhhHhHHHHHHHH--hhhhhccccccccceeehhhhhhhH-
Confidence 3333222 222345 99999999999999999999999988765432211 3357789999874444444444211
Q ss_pred cEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeC
Q 001014 313 NVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN 387 (1190)
Q Consensus 313 ~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiN 387 (1190)
..+.-...-..++.++|..... | + ..-++-+-+...+-+.+|-- .+|.|+..... +|+=|++|||
T Consensus 300 --KaymRtsIsgnWKtNtGSamLE---Q-I--amseRyklwvdtcse~fGgl-dICav~alhsK-dGrd~i~eV~ 364 (488)
T KOG3895|consen 300 --KAYMRTSISGNWKTNTGSAMLE---Q-I--AMSERYKLWVDTCSEMFGGL-DICAVKALHSK-DGRDYIIEVM 364 (488)
T ss_pred --HHHhhhhhccCcccCchHHHHH---H-H--HHHHHHHHHHHHHHHhcCCc-ceEEeeeeecc-cchhheeeec
Confidence 1110000000112222321100 0 0 01122333444556667763 89999999886 8999999999
No 227
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.065 Score=59.19 Aligned_cols=175 Identities=13% Similarity=0.163 Sum_probs=104.5
Q ss_pred cCCCCceEEccCCHHHHhhccCHHHHHHH----HHHcC---CCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcce
Q 001014 750 ASGDGLVRIWGTSPDSIDAAEDRERFNAI----IKELS---IEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAM 822 (1190)
Q Consensus 750 ~~G~~~i~~~g~~~~~i~~~~DK~~~~~~----l~~~g---Ip~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv 822 (1190)
-.| ++.+. +..++-.+.||-+...- ...+| +|..+-...-+-.+. ...-.||+|||--.+..|.|-
T Consensus 183 yag---iP~vN-Sl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK~m---~s~~tyPvVVkvghahsGmGK 255 (488)
T KOG3895|consen 183 YAG---IPSVN-SLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHKEM---LSQPTYPVVVKVGHAHSGMGK 255 (488)
T ss_pred hcC---Ccccc-hhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCchhh---ccCCCCcEEEEecccccccce
Confidence 667 88875 66666666666544433 34455 454333333332222 223459999999999999999
Q ss_pred EEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecccccccccccccCCCCCC-H
Q 001014 823 EIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTIS-S 901 (1190)
Q Consensus 823 ~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~-~ 901 (1190)
..|+|.+|+.+.-.- .... +...-+|.||+.-..+.|+-+....-..+--+|..+... ..|.+. +. -
T Consensus 256 iKV~Nh~dfqDi~sv-val~-~Tyat~epFiDaKYDiriQKIG~nYKaymRtsIsgnWKt---NtGSam-------LEQI 323 (488)
T KOG3895|consen 256 IKVENHEDFQDIASV-VALT-KTYATAEPFIDAKYDIRIQKIGHNYKAYMRTSISGNWKT---NTGSAM-------LEQI 323 (488)
T ss_pred eeecchhhhHhHHHH-HHHH-hhhhhccccccccceeehhhhhhhHHHHhhhhhccCccc---CchHHH-------HHHH
Confidence 999999988764332 1111 334678999966666776666543211111111111110 111100 00 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 902 SCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 902 ~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
..-++-+-+...+-+.+|---+|.|+....+||+=|++|||-
T Consensus 324 amseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895|consen 324 AMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecc
Confidence 122455556667777888778999999998999999999985
No 228
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=94.99 E-value=0.24 Score=58.76 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCC
Q 001014 668 HTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRL 747 (1190)
Q Consensus 668 ~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~ 747 (1190)
...+.+.+.|+++++++...-+. -..++|.....++.|...+--. -++...++.. .+..+..
T Consensus 204 ~f~~~f~~~G~~~vI~d~~~L~y-----~~g~L~~~~~~ID~VyRR~Vt~---e~l~~~d~~~--~li~Ay~-------- 265 (445)
T PF14403_consen 204 VFQRLFEEHGYDCVICDPRDLEY-----RDGRLYAGGRPIDAVYRRFVTS---ELLERYDEVQ--PLIQAYR-------- 265 (445)
T ss_pred HHHHHHHHcCCceEecChHHcee-----cCCEEEECCEeeehhhHhhhhH---Hhhhccccch--HHHHHHh--------
Confidence 34677889999999998654332 2234444332233332222111 1122222222 2223332
Q ss_pred cccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCC-------------CCCCceeecC--------HHHHHHHHHHhC
Q 001014 748 PSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSI-------------EQPKGGIAKS--------EADALAIAKEIG 806 (1190)
Q Consensus 748 l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gI-------------p~p~~~~~~s--------~~e~~~~~~~ig 806 (1190)
..- +.++| +-...++.||..|.-+-.+..- .+|-+..++. ..++.+++..-.
T Consensus 266 --~~a---v~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r 338 (445)
T PF14403_consen 266 --DGA---VCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANR 338 (445)
T ss_pred --cCC---eEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhch
Confidence 223 66664 3455677777777665333221 1456666655 345555554445
Q ss_pred CcEEEecCcCCCCcceEEe--CCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEec
Q 001014 807 YPVVVRPSYVLGGRAMEIV--YTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 807 yPvvvKP~~~~gg~Gv~iv--~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
--+|+||..+.||+||.+= .++++.+++++++.. .++++|||+...++ ....+.|
T Consensus 339 ~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~----~~yilQe~v~~~~~-~~~~~~d 395 (445)
T PF14403_consen 339 DRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAR----EPYILQEYVRPPRE-PMPAFED 395 (445)
T ss_pred hcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhc----CCcEEEEEecCCcc-ccccccC
Confidence 5789999999999999874 467888888888553 48999999944333 3334444
No 229
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.072 Score=58.09 Aligned_cols=111 Identities=29% Similarity=0.452 Sum_probs=69.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC--CccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT--DPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~--~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
|+++|+|+|.. |+.+++.|.+.|++|++++.++..... ......+.+...-+...+++-+--.+.|+
T Consensus 1 m~iiIiG~G~v-----------G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRV-----------GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHH-----------HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 48999999976 899999999999999999988765432 11233344544443334333344457899
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIG 225 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~G 225 (1190)
++...+... .|..+. .-.++.+|++.+ +.++.|....+ .+++.|
T Consensus 70 vva~t~~d~-~N~i~~---~la~~~~gv~~v------iar~~~~~~~~-~~~~~g 113 (225)
T COG0569 70 VVAATGNDE-VNSVLA---LLALKEFGVPRV------IARARNPEHEK-VLEKLG 113 (225)
T ss_pred EEEeeCCCH-HHHHHH---HHHHHhcCCCcE------EEEecCHHHHH-HHHHcC
Confidence 887776422 222221 112344566654 56666666555 666777
No 230
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.80 E-value=0.11 Score=59.31 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=92.0
Q ss_pred EeeccccCCCCCCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccC-CcceeecCCcH
Q 001014 629 YSSYDFECESAPTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDT-SDRLYFEPLTV 707 (1190)
Q Consensus 629 y~~~~~~~~~~~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~-ad~~~~~p~~~ 707 (1190)
.++|..--+..-.+.++|+|.|.|. + +.++++-++.+|.+|++++.+++.......+ +|..+... +.
T Consensus 153 iT~y~alk~~~~~pG~~V~I~G~GG--l---------Gh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~ 220 (339)
T COG1064 153 ITTYRALKKANVKPGKWVAVVGAGG--L---------GHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DS 220 (339)
T ss_pred eeEeeehhhcCCCCCCEEEEECCcH--H---------HHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-Cc
Confidence 3455433334445788999999886 3 5577999999999999999988765333333 45444322 22
Q ss_pred HHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCC
Q 001014 708 EDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQP 787 (1190)
Q Consensus 708 e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p 787 (1190)
+..+.+++. +|+++.+.+..+.......|. ..| .+.+.|... ......-..+.-++++.-|-.-
T Consensus 221 -~~~~~~~~~-~d~ii~tv~~~~~~~~l~~l~----------~~G--~~v~vG~~~--~~~~~~~~~~~li~~~~~i~GS 284 (339)
T COG1064 221 -DALEAVKEI-ADAIIDTVGPATLEPSLKALR----------RGG--TLVLVGLPG--GGPIPLLPAFLLILKEISIVGS 284 (339)
T ss_pred -hhhHHhHhh-CcEEEECCChhhHHHHHHHHh----------cCC--EEEEECCCC--CcccCCCCHHHhhhcCeEEEEE
Confidence 233333322 899998888223333334444 444 345555332 0011111122233333333322
Q ss_pred CceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh
Q 001014 788 KGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE 840 (1190)
Q Consensus 788 ~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~ 840 (1190)
-.....+.+|+.+++.+-+ |||... .....+|+.+++++...
T Consensus 285 ~~g~~~d~~e~l~f~~~g~----Ikp~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 285 LVGTRADLEEALDFAAEGK----IKPEIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred ecCCHHHHHHHHHHHHhCC----ceeeEE-------eeECHHHHHHHHHHHHc
Confidence 2233345566666666544 233211 24566777777776543
No 231
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=94.52 E-value=0.64 Score=50.36 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=79.2
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
++|+|+||=.. ++.+++.|...+...++......+.......+......+++.+.+.++++++++|.++
T Consensus 3 ~~ilvlGGT~D-----------ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llI 71 (257)
T COG2099 3 MRILLLGGTSD-----------ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLI 71 (257)
T ss_pred ceEEEEeccHH-----------HHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEE
Confidence 58999998533 7889999999985555444333333333445556667888999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHh--hHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC--CCCeeecCCHHHHHHHHHHcC
Q 001014 173 PTMGGQTALNLAVALAES--GALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK--TPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 173 p~~~g~~~~~~~~~l~~~--~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip--vp~~~~v~s~~e~~~~~~~ig 248 (1190)
=..+.. +...+++ .+++..|++++ .+++-+.. -+++..|.+.+++.+.+.+.+
T Consensus 72 DATHPy-----Aa~iS~Na~~aake~gipy~------------------r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 72 DATHPY-----AARISQNAARAAKETGIPYL------------------RLERPPWAPNGDNWIEVADIEEAAEAAKQLG 128 (257)
T ss_pred ECCChH-----HHHHHHHHHHHHHHhCCcEE------------------EEECCccccCCCceEEecCHHHHHHHHhccC
Confidence 777621 1223332 35666777766 12222222 256677777777777666554
No 232
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=94.42 E-value=0.68 Score=45.76 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=73.1
Q ss_pred CcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcc
Q 001014 250 FPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVH 329 (1190)
Q Consensus 250 ~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~ 329 (1190)
-|++|||....-.--..+..+.++|.. .-...++..+++.+.++-..|+.+.++. |+++....- .
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~----~~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~Y---~----- 66 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIG----FGSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSPY---R----- 66 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccc----cCCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEeec---C-----
Confidence 589999998665555567776776552 1123456789999999977899998884 455544321 1
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCC
Q 001014 330 TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 330 ~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~ 391 (1190)
++. ....+. .+.+.+.+.+++..-.--.+-+|+-++. +|+.+|||+|+.-+
T Consensus 67 -~~~-----~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 67 -GDW-----DLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTD-DGGWALVEANDGWS 117 (130)
T ss_pred -CCc-----ccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeC-CCCEEEEEecCccc
Confidence 110 000222 2344444444432222367889999997 88999999998544
No 233
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=94.28 E-value=0.6 Score=46.12 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=70.1
Q ss_pred CcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeeccccc
Q 001014 807 YPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVH 886 (1190)
Q Consensus 807 yPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~ 886 (1190)
-|+.|||....-.---.++.+.++|.. .....++.++++.+.++...|+.+-++. |+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~----~~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~Y--------- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIG----FGSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSPY--------- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccc----cCCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEeec---------
Confidence 489999988544333346666665541 1233466789999999889999987773 466544422
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHHHHHHc-CCCcceeEEEEEecCCCEEEEEEccC
Q 001014 887 SGDSACMIPTKTISSSCLDTISSWTIKLAKRL-NVCGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 887 ~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~L-g~~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
.++ +....+.+ +.+.+.+.+++. ..--.+.+|+-+..+|+.+|+|+|+-
T Consensus 66 ~~~-----~~~~~~~~----~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~ 115 (130)
T PF14243_consen 66 RGD-----WDLEPDPD----VVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDG 115 (130)
T ss_pred CCC-----cccCCCHH----HHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCc
Confidence 111 11112333 333444444433 22356789998867999999999994
No 234
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=94.07 E-value=0.64 Score=51.35 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=60.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEE-ccCCCCCCCCcc-CcceEEECCC-CHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILI-NSNPATIMTDPG-LADRTYITPM-TPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v-~~~~~~~~~~~~-~ad~~~i~p~-~~~~v~~i~~~~~~d 169 (1190)
|+|||+||= .| |+.+++.|.+.|+ +++- ...-........ ....+.+..+ +.+.+.+++++++++
T Consensus 1 m~ILvlgGT-------tE----~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~ 68 (249)
T PF02571_consen 1 MKILVLGGT-------TE----GRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGID 68 (249)
T ss_pred CEEEEEech-------HH----HHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCc
Confidence 589999984 33 8999999999998 4432 222221111122 2335678899 999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
.|+=..|.. +..+.... ..++++.|++++
T Consensus 69 ~vIDATHPf-A~~is~na--~~a~~~~~ipyl 97 (249)
T PF02571_consen 69 AVIDATHPF-AAEISQNA--IEACRELGIPYL 97 (249)
T ss_pred EEEECCCch-HHHHHHHH--HHHHhhcCcceE
Confidence 999777622 11111111 245666677766
No 235
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.02 E-value=0.59 Score=52.42 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=108.0
Q ss_pred HHHHHcCCCCCCceeecCHHHHHHHHHHh--CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh-CCCCcEEEEEec
Q 001014 777 AIIKELSIEQPKGGIAKSEADALAIAKEI--GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV-DPERPVLIDKYL 853 (1190)
Q Consensus 777 ~~l~~~gIp~p~~~~~~s~~e~~~~~~~i--gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~-~~~~~vliEefI 853 (1190)
.|..+..=-+-+...+.|.+|+..++..+ +-||=+||..+.||+|..++.|.++|+.++...-.. .....+++|+-+
T Consensus 105 ~fa~~~~~~vL~G~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L 184 (355)
T PF11379_consen 105 AFAERVRDAVLPGYTVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELARHGLVLEEDL 184 (355)
T ss_pred HHHHHHhhhccCCccccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEeccc
Confidence 44445444566777888999998887764 579999999999999999999999999998863111 123568999999
Q ss_pred CCcceEEEeEEecCCCcEEEEeeeeeeecc--c--cccccccccc-------CCCCCCHHHHHHHHHHHHHHHH--HcCC
Q 001014 854 SDAIEIDVDALADSCGNVVIGGIMEHIEQA--G--VHSGDSACMI-------PTKTISSSCLDTISSWTIKLAK--RLNV 920 (1190)
Q Consensus 854 ~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~--g--~~~gd~~~~~-------p~~~l~~~~~~~i~~~a~~i~~--~Lg~ 920 (1190)
+.-.-++|.-++-+ |-.+.+.-.++.... | ++.|....+. -...+++.+...+.+ +...=. .-.|
T Consensus 185 ~~~~T~SVGqv~v~-g~~~SY~GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~q-A~~Yd~Aa~~~y 262 (355)
T PF11379_consen 185 EEVVTYSVGQVRVA-GLVASYYGTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQ-ARAYDAAAQACY 262 (355)
T ss_pred CCCceeeEEEEEEC-CEEEEEeeEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHH-HHHHHHHHHHhC
Confidence 88888999888753 466666666655332 1 2323222222 233566655444433 222111 1133
Q ss_pred Ccce----eEEEEE--ecCCCE--EEEEEccCCCCCh
Q 001014 921 CGLM----NCQYAI--TTSGDV--YLLEANPRASRTV 949 (1190)
Q Consensus 921 ~G~~----~ief~~--d~~g~~--~viEiNpR~~~s~ 949 (1190)
-|++ |-|... |..|.. =|+|=.=|++|..
T Consensus 263 Pgf~ASRRNYDVa~G~da~G~~r~GVLEQSWRvGGAS 299 (355)
T PF11379_consen 263 PGFFASRRNYDVAQGLDAQGRWRSGVLEQSWRVGGAS 299 (355)
T ss_pred chhheeeccceeeeccCCCCCeeeceeeeeeccCCCC
Confidence 3544 344443 234444 3888888888754
No 236
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=93.60 E-value=0.42 Score=58.26 Aligned_cols=198 Identities=16% Similarity=0.131 Sum_probs=115.8
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCH---HHHHHHH
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTL---DECISIA 244 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~---~e~~~~~ 244 (1190)
+|.++......++++-++..++ +.-||+-++..--....|+....++|+..||++|++..++.. ++..+++
T Consensus 91 CdcLIsFhSsGFPLdKAiaY~k------LRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~li 164 (1018)
T KOG1057|consen 91 CDCLISFHSKGFPLDKAVAYAK------LRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLI 164 (1018)
T ss_pred cceEEEeccCCCChHHHHHHHH------hcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhh
Confidence 6777766666677777764433 445888889999999999999999999999999999887642 2333333
Q ss_pred HH----------cCCCcEEEecCCCCCCcceEEeCC---HHHHHHHHHHHHhcC----------CCCcEEEeeecCCCee
Q 001014 245 NE----------IGEFPLIIRPAFTLGGTGGGIAYN---KEEFEAICKAGLAAS----------LTSQVLVEKSLLGWKE 301 (1190)
Q Consensus 245 ~~----------ig~~PvVVKP~~g~gg~Gv~iv~~---~~el~~~~~~~~~~~----------~~~~vlVEe~I~G~~E 301 (1190)
+. +. -|+|=||+.+-. ..|.|-+- ----++.++++-+.+ ..+.+|-|||++-. -
T Consensus 165 e~eD~vEVnGevf~-KPFVEKPVs~ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptd-g 241 (1018)
T KOG1057|consen 165 EGEDHVEVNGEVFQ-KPFVEKPVSAED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTD-G 241 (1018)
T ss_pred cCCCeEEEcceecc-CCcccCCCCccc-ccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCC-C
Confidence 21 33 599999987542 11221110 001122333332211 14679999999841 1
Q ss_pred eeEEEEEeCCCcEEEEEeee-eeCCC--Cc----ccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEE
Q 001014 302 YELEVMRDLADNVVIICSIE-NVDPM--GV----HTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAV 374 (1190)
Q Consensus 302 ~sv~v~~d~~g~~~~~~~~e-~~~~~--g~----~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~ 374 (1190)
-.|-|+.-+ .-. +-.| +-.|. |. ..|.- ...|.. |++.+ ..+|.+++-+++- -+|++|+..
T Consensus 242 tDVKvYTVG--p~Y--aHAEaRKSPvvDGkV~Rns~GKE-vRYpv~-Ls~~E----K~iA~KVciAF~Q--~VCGFDLLR 309 (1018)
T KOG1057|consen 242 TDVKVYTVG--PDY--AHAEARKSPVVDGKVERNSDGKE-VRYPVI-LNSSE----KQIARKVCIAFKQ--TVCGFDLLR 309 (1018)
T ss_pred ccceEEeeC--cch--hhhhhccCccccceeeecCCCce-eeceee-cChhh----HHHHhHHHhhccc--cccchHHhh
Confidence 122222211 000 0001 01110 10 11222 234554 77766 4456677777765 688889887
Q ss_pred ecCCCcEEEEEeCC
Q 001014 375 NPVDGEVMVIEMNP 388 (1190)
Q Consensus 375 ~~~~g~~~viEiNp 388 (1190)
. +|.=||+.||.
T Consensus 310 a--~G~SYVcDVNG 321 (1018)
T KOG1057|consen 310 A--NGKSYVCDVNG 321 (1018)
T ss_pred c--CCceEEEeccc
Confidence 6 89999999993
No 237
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.58 E-value=1.3 Score=49.67 Aligned_cols=163 Identities=21% Similarity=0.199 Sum_probs=104.4
Q ss_pred CCCeeecCCHHHHHHHHHHc-CCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc-CCCCcEEEeeecCCCeeeeEE
Q 001014 228 TPPSGIGNTLDECISIANEI-GEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA-SLTSQVLVEKSLLGWKEYELE 305 (1190)
Q Consensus 228 vp~~~~v~s~~e~~~~~~~i-g~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~-~~~~~vlVEe~I~G~~E~sv~ 305 (1190)
+-+.+.+-|.+++..+...+ ..-||=+||..+.||+|..++.+.++|+.++..+-.. .....+++|+-+....-|||-
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~~~T~SVG 193 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEEVVTYSVG 193 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCCCceeeEE
Confidence 45556666788887776543 2259999999999999999999999999998764321 114579999999998889998
Q ss_pred EEEeCCCcEEEEEeeeeeCCC--C--cccccEEEEec-------CCCCCHHHHHHHHHHHH---HHHHHhCCccce----
Q 001014 306 VMRDLADNVVIICSIENVDPM--G--VHTGDSITVAP-------AQTLTDKEYQRLRDYSI---AIIREIGVECGG---- 367 (1190)
Q Consensus 306 v~~d~~g~~~~~~~~e~~~~~--g--~~~g~~~~~~P-------a~~l~~~~~~~l~~~a~---~i~~~lg~~~G~---- 367 (1190)
-++- .|-.+.++..|...+. | +..|....+.. ...|++.....+..... .+... +- |+
T Consensus 194 qv~v-~g~~~SY~GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~qA~~Yd~Aa~~~--yP-gf~ASR 269 (355)
T PF11379_consen 194 QVRV-AGLVASYYGTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQARAYDAAAQAC--YP-GFFASR 269 (355)
T ss_pred EEEE-CCEEEEEeeEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--Cc-hhheee
Confidence 7774 5677788888776543 2 33344444322 22367766555544322 12222 21 32
Q ss_pred EEEEEEEecC-CCcEE--EEEeCCCCCCch
Q 001014 368 SNVQFAVNPV-DGEVM--VIEMNPRVSRSS 394 (1190)
Q Consensus 368 ~~vef~~~~~-~g~~~--viEiNpR~~gs~ 394 (1190)
.|-|+..-.+ .|.+. |+|=.=|++|.+
T Consensus 270 RNYDVa~G~da~G~~r~GVLEQSWRvGGAS 299 (355)
T PF11379_consen 270 RNYDVAQGLDAQGRWRSGVLEQSWRVGGAS 299 (355)
T ss_pred ccceeeeccCCCCCeeeceeeeeeccCCCC
Confidence 2333333211 33333 899999999865
No 238
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.58 E-value=0.061 Score=67.71 Aligned_cols=115 Identities=21% Similarity=0.324 Sum_probs=77.4
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
.++|+|+|.|. +|| .+++.|++.|++++++|.||+.+..-.+.....|+...+-.++++-+.-++.+.+
T Consensus 400 ~~~vII~G~Gr--~G~---------~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGR--FGQ---------IVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecCh--HHH---------HHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 57899999988 555 4599999999999999999887653322233445545555667777777889999
Q ss_pred ccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCC
Q 001014 723 IVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQP 787 (1190)
Q Consensus 723 i~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p 787 (1190)
++..+.. .+..++..+. +.. |+...+..++|+.... .|.+.|....
T Consensus 469 vv~~~d~~~n~~i~~~ar----------~~~--------p~~~iiaRa~d~~~~~-~L~~~Gad~v 515 (621)
T PRK03562 469 INAIDDPQTSLQLVELVK----------EHF--------PHLQIIARARDVDHYI-RLRQAGVEKP 515 (621)
T ss_pred EEEeCCHHHHHHHHHHHH----------HhC--------CCCeEEEEECCHHHHH-HHHHCCCCEE
Confidence 9888875 4555555544 222 3334455677776544 4566777754
No 239
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.53 E-value=0.088 Score=66.14 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=79.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
+.+|+|+|.|. . +..+++.|++.|++++++|.||+.+..-.+.....++...+-+++++-+.-++.+.+
T Consensus 400 ~~~vII~G~Gr--~---------G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGR--F---------GQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCch--H---------HHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 56899999988 4 445599999999999999999987654333333455555566777777888899999
Q ss_pred ccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 723 IVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 723 i~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
+...++. .+..++..+. +.. |+...+..++|+...+. |++.|...
T Consensus 469 v~~~~d~~~n~~i~~~~r----------~~~--------p~~~IiaRa~~~~~~~~-L~~~Ga~~ 514 (601)
T PRK03659 469 VITCNEPEDTMKIVELCQ----------QHF--------PHLHILARARGRVEAHE-LLQAGVTQ 514 (601)
T ss_pred EEEeCCHHHHHHHHHHHH----------HHC--------CCCeEEEEeCCHHHHHH-HHhCCCCE
Confidence 9988876 4445545544 222 44555667777766554 56677765
No 240
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=93.43 E-value=0.16 Score=56.78 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCc-----------ceEEeCCHHHHHHHHHHHH
Q 001014 214 RDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGT-----------GGGIAYNKEEFEAICKAGL 282 (1190)
Q Consensus 214 K~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~-----------Gv~iv~~~~el~~~~~~~~ 282 (1190)
-+...++|++.|+.+|+..+..|+||+.+.+.++|.--+|||.-.-.||+ ||.+|.+++|.+.....++
T Consensus 27 ey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~qmi 106 (434)
T KOG2799|consen 27 EYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVASQMI 106 (434)
T ss_pred HHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHHHhh
Confidence 44557899999999999999999999999999998556999997655554 6889999999998888776
Q ss_pred hcC-----------CCCcEEEeeecCCCeeeeEEEEEeC
Q 001014 283 AAS-----------LTSQVLVEKSLLGWKEYELEVMRDL 310 (1190)
Q Consensus 283 ~~~-----------~~~~vlVEe~I~G~~E~sv~v~~d~ 310 (1190)
..- ....++|-+-..+..|+.+..+.|+
T Consensus 107 G~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr 145 (434)
T KOG2799|consen 107 GKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDR 145 (434)
T ss_pred cceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhc
Confidence 321 1345666666666567777665554
No 241
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.29 E-value=0.071 Score=51.41 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=52.1
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQ 725 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~ 725 (1190)
|+|+|.|.. +..+++.|++.++++++++.+++....-....-..+....+-+++++-+.-++.+.++..
T Consensus 1 vvI~G~g~~-----------~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRI-----------GREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHH-----------HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHH-----------HHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEc
Confidence 689999874 667799999988899999999765432111111222223333445555566788888887
Q ss_pred cCCc-hhhhhhhhHH
Q 001014 726 FGGQ-TPLKLSLPIH 739 (1190)
Q Consensus 726 ~g~~-~~~~la~~l~ 739 (1190)
.+.. ....++..+.
T Consensus 70 ~~~d~~n~~~~~~~r 84 (116)
T PF02254_consen 70 TDDDEENLLIALLAR 84 (116)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 7655 4445555555
No 242
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.20 E-value=0.21 Score=57.03 Aligned_cols=80 Identities=28% Similarity=0.378 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC-cceEEECCCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGL-ADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
..++|+|+|.|.+ |..+++-++.+|.+|++++.+++......++ +|.++... +.+.+..+-+ ..|
T Consensus 166 pG~~V~I~G~GGl-----------Gh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~--~~d 231 (339)
T COG1064 166 PGKWVAVVGAGGL-----------GHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE--IAD 231 (339)
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh--hCc
Confidence 4579999999965 6788999999999999999887744333455 55555544 5555554444 299
Q ss_pred EEEecCCChhHHHHHH
Q 001014 170 ALLPTMGGQTALNLAV 185 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~ 185 (1190)
+++.+.. ...++.++
T Consensus 232 ~ii~tv~-~~~~~~~l 246 (339)
T COG1064 232 AIIDTVG-PATLEPSL 246 (339)
T ss_pred EEEECCC-hhhHHHHH
Confidence 9998888 55555544
No 243
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=93.18 E-value=0.061 Score=62.59 Aligned_cols=111 Identities=28% Similarity=0.448 Sum_probs=76.9
Q ss_pred eeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc------CC-----CCcHHh----------
Q 001014 1044 VFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH------EG-----RPHAGD---------- 1102 (1190)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~------e~-----~~~~~~---------- 1102 (1190)
.++|+.+ |.-+.+.++.|.++|++|++|.||+++|++.||++..|..+. +| +|.+..
T Consensus 5 ALiSVsd--KtGive~ak~L~~~gvei~STGGTak~l~eaGi~V~~Vs~~TgfpE~ldGRVKTLHP~ihgGiL~~r~~~~ 82 (515)
T COG0138 5 ALLSVSD--KTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDGRVKTLHPKIHGGILARRDKDE 82 (515)
T ss_pred hheeecc--ccChHHHHHHHHhCCEEEEecCCHHHHHHhCCCCCCchhhccCChhHhCCcceeeccccccceeeccccHH
Confidence 5666654 677999999999999999999999999999999998887652 12 243322
Q ss_pred ---HHHc---CcEEEEEEcCCC--C-----CCC------Cc--ccH-HHHHHHHHC-CCcEEccHHHHHHHHHHHHh
Q 001014 1103 ---MVAN---GQIQMMVITSSG--D-----SLD------QI--DGL-KLRRRGLAY-KVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1103 ---~i~~---~~i~lvint~~~--~-----~~~------~~--d~~-~iRr~A~~~-~ip~~T~~~~a~a~~~al~~ 1156 (1190)
.|++ ..||+|++.-.. . +.+ .- -|- .+|.+|-.| .|.++|++.....+++.|+.
T Consensus 83 h~~~l~e~~I~~iDlVvvNLYPF~~tv~~~~~~~~e~vEnIDIGGptmlRaAAKN~~~V~V~~dp~Dy~~vl~~l~~ 159 (515)
T COG0138 83 HMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAVENIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKA 159 (515)
T ss_pred HHHHHHHcCCCCccEEEEcCCChhhhccCCCCCHHHHHhccccCchHHhHHhhhccCCeeEEecchhhHHHHHHHhc
Confidence 2222 338888755221 1 110 11 133 455555554 69999999999999888864
No 244
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.91 E-value=0.33 Score=53.83 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=52.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCc-ceEEECCC-CHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLA-DRTYITPM-TPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~a-d~~~i~p~-~~~~v~~i~~~~~~d~ 170 (1190)
++|||.||-. |-|...+..|.+.|++|+++|............. -..|...+ |.+.+.+++++++||+
T Consensus 1 ~~iLVtGGAG----------YIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~ida 70 (329)
T COG1087 1 MKVLVTGGAG----------YIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDA 70 (329)
T ss_pred CeEEEecCcc----------hhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCE
Confidence 4899999753 6699999999999999999997655432211111 14454443 7788999999999999
Q ss_pred EEe
Q 001014 171 LLP 173 (1190)
Q Consensus 171 Vip 173 (1190)
|+=
T Consensus 71 ViH 73 (329)
T COG1087 71 VVH 73 (329)
T ss_pred EEE
Confidence 983
No 245
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.61 E-value=0.24 Score=61.93 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=58.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
+.+|+|+|.|.. +.++++.|++.|++++++|.|++....-.+..-..+....+-+++++-+.-+++|.+
T Consensus 417 ~~hiiI~G~G~~-----------G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 417 CNHALLVGYGRV-----------GSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCCEEEECCChH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 678999999984 556699999999999999999876543332223334444445667777777889988
Q ss_pred ccccCCc-hhhhhhhh
Q 001014 723 IVQFGGQ-TPLKLSLP 737 (1190)
Q Consensus 723 i~~~g~~-~~~~la~~ 737 (1190)
+...++. .+..+...
T Consensus 486 iv~~~~~~~~~~iv~~ 501 (558)
T PRK10669 486 LLTIPNGYEAGEIVAS 501 (558)
T ss_pred EEEcCChHHHHHHHHH
Confidence 7766554 33334333
No 246
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.36 E-value=0.26 Score=53.79 Aligned_cols=110 Identities=20% Similarity=0.317 Sum_probs=72.0
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc--CCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD--TSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~--~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
++++|+|+|+. +.++++.|.+.|+.+++++.+++....... ...+.+....+-++++.-+--.+.|.
T Consensus 1 m~iiIiG~G~v-----------G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRV-----------GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHH-----------HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 47999999994 566699999999999999999877554211 33344444455566666667788999
Q ss_pred cccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC
Q 001014 722 IIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS 783 (1190)
Q Consensus 722 Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g 783 (1190)
+++..+.. .+.-++.... ...| .+..+..+.|.... +.+++.|
T Consensus 70 vva~t~~d~~N~i~~~la~---------~~~g---------v~~viar~~~~~~~-~~~~~~g 113 (225)
T COG0569 70 VVAATGNDEVNSVLALLAL---------KEFG---------VPRVIARARNPEHE-KVLEKLG 113 (225)
T ss_pred EEEeeCCCHHHHHHHHHHH---------HhcC---------CCcEEEEecCHHHH-HHHHHcC
Confidence 99888875 4433333322 0345 23335566666554 4456677
No 247
>PLN00016 RNA-binding protein; Provisional
Probab=91.68 E-value=1.1 Score=53.19 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCCEEEEE----cCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc--------cCc-ceEEECCCCHH
Q 001014 91 DLRKILIL----GAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP--------GLA-DRTYITPMTPE 157 (1190)
Q Consensus 91 ~~~kVLIi----G~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~--------~~a-d~~~i~p~~~~ 157 (1190)
++++|||+ |+... -|..+++.|.+.|++|++++.++....... .+. ...-+...|..
T Consensus 51 ~~~~VLVt~~~~GatG~----------iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAF----------IGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPA 120 (378)
T ss_pred ccceEEEEeccCCCcee----------EhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHH
Confidence 34689999 76432 278999999999999999987654211000 000 00111112444
Q ss_pred HHHHHHHHcCCCEEEecCC
Q 001014 158 LVEQVLEKERPDALLPTMG 176 (1190)
Q Consensus 158 ~v~~i~~~~~~d~Vip~~~ 176 (1190)
.+.+++...++|.|+-..+
T Consensus 121 d~~~~~~~~~~d~Vi~~~~ 139 (378)
T PLN00016 121 DVKSKVAGAGFDVVYDNNG 139 (378)
T ss_pred HHHhhhccCCccEEEeCCC
Confidence 4555665568999986654
No 248
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.66 E-value=0.39 Score=47.88 Aligned_cols=76 Identities=12% Similarity=0.279 Sum_probs=43.8
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQ 725 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~ 725 (1190)
++|+|+|+. +..+++-++.+||+|.++|+.++... .+++.. ....+++.+.+.-..-+.||.+
T Consensus 1 L~I~GaG~v-----------a~al~~la~~lg~~v~v~d~r~e~~~----~~~~~~--~~~~~~~~~~~~~~~~t~Vv~t 63 (136)
T PF13478_consen 1 LVIFGAGHV-----------ARALARLAALLGFRVTVVDPRPERFP----EADEVI--CIPPDDILEDLEIDPNTAVVMT 63 (136)
T ss_dssp EEEES-STC-----------HHHHHHHHHHCTEEEEEEES-CCC-T----TSSEEE--CSHHHHHHHHC-S-TT-EEE--
T ss_pred CEEEeCcHH-----------HHHHHHHHHhCCCEEEEEcCCccccC----CCCccE--ecChHHHHhccCCCCCeEEEEc
Confidence 579999995 66779999999999999999977432 333322 2334555544443444567777
Q ss_pred cCCchhhhhhhhH
Q 001014 726 FGGQTPLKLSLPI 738 (1190)
Q Consensus 726 ~g~~~~~~la~~l 738 (1190)
.+......+...+
T Consensus 64 h~h~~D~~~L~~~ 76 (136)
T PF13478_consen 64 HDHELDAEALEAA 76 (136)
T ss_dssp S-CCCHHHHHHHH
T ss_pred CCchhHHHHHHHH
Confidence 7767554444443
No 249
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.50 E-value=0.79 Score=50.87 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=48.3
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccC-CcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDT-SDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~-ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
+|||+||=.. +..+++.|.+.|+++++....+......... ........++.+.+.+++++++++.||
T Consensus 2 ~ILvlGGT~e-----------gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 2 TVLLMGGTVD-----------SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred eEEEEechHH-----------HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 7999998332 6778999999999998876665432221111 223444567788888999999999887
Q ss_pred cc
Q 001014 724 VQ 725 (1190)
Q Consensus 724 ~~ 725 (1190)
-.
T Consensus 71 DA 72 (256)
T TIGR00715 71 DA 72 (256)
T ss_pred Ec
Confidence 43
No 250
>PRK04148 hypothetical protein; Provisional
Probab=91.14 E-value=0.3 Score=48.23 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=54.5
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC------cc-------------ccCCcceeec
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS------TD-------------YDTSDRLYFE 703 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s------~~-------------~~~ad~~~~~ 703 (1190)
.++|+++|.|. +..++..|.++|++|+.+|.+|+.+. .+ |.-+|-.|-.
T Consensus 17 ~~kileIG~Gf------------G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 17 NKKIVELGIGF------------YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred CCEEEEEEecC------------CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 47899999774 34458889999999999999987442 11 1122222221
Q ss_pred --CCc-HHHHHHHhhhcCCCccccccCCchh
Q 001014 704 --PLT-VEDVLNVIDLERPEGIIVQFGGQTP 731 (1190)
Q Consensus 704 --p~~-~e~v~~i~~~~~~d~Vi~~~g~~~~ 731 (1190)
|.. ...+++++++.+.|.+|..++++.+
T Consensus 85 rpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 85 RPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 111 5678999999999999999998864
No 251
>PRK04148 hypothetical protein; Provisional
Probab=91.12 E-value=0.43 Score=47.07 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=53.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-------------------ccCcceEE-E
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-------------------PGLADRTY-I 151 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-------------------~~~ad~~~-i 151 (1190)
.++|+++|.|. |..++..|.++|++|+++|.++...... ..-+|-.| +
T Consensus 17 ~~kileIG~Gf------------G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 17 NKKIVELGIGF------------YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred CCEEEEEEecC------------CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 36899999993 4568999999999999999887632100 11233333 2
Q ss_pred CCC-C-HHHHHHHHHHcCCCEEEecCCChhH
Q 001014 152 TPM-T-PELVEQVLEKERPDALLPTMGGQTA 180 (1190)
Q Consensus 152 ~p~-~-~~~v~~i~~~~~~d~Vip~~~g~~~ 180 (1190)
-|- + ...+.+++++.++|.++..++|+.+
T Consensus 85 rpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 85 RPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 221 1 2367888999999999988887653
No 252
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=90.91 E-value=0.81 Score=44.29 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=52.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC---Cc------cCcceEE-ECC-CCHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT---DP------GLADRTY-ITP-MTPELVEQ 161 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~---~~------~~ad~~~-i~p-~~~~~v~~ 161 (1190)
|+|.|+|.... .+.-|..+++.|++.|++++.+++....+.- .. .-.|-.. +.| -....+.+
T Consensus 1 ksiAVvGaS~~-------~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDN-------PGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVD 73 (116)
T ss_dssp -EEEEET--SS-------TTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHH
T ss_pred CEEEEEcccCC-------CCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHH
Confidence 57999998743 1234788999999999999999987653221 11 1222222 111 11223344
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHH
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLD 206 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~ 206 (1190)
-+.+.++..++...+. .+..+ .+.++++|++++||+--
T Consensus 74 ~~~~~g~~~v~~~~g~---~~~~~----~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 74 EAAALGVKAVWLQPGA---ESEEL----IEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHHT-SEEEE-TTS-----HHH----HHHHHHTT-EEEESS-H
T ss_pred HHHHcCCCEEEEEcch---HHHHH----HHHHHHcCCEEEeCCcc
Confidence 4445678888866651 11111 34577789999987643
No 253
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.84 E-value=0.72 Score=53.91 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=76.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCC-CeEEEEccCCCCCCCCccC----cceEEECCCCHHHHHHHHHHc
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEG-YEVILINSNPATIMTDPGL----ADRTYITPMTPELVEQVLEKE 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-~~vi~v~~~~~~~~~~~~~----ad~~~i~p~~~~~v~~i~~~~ 166 (1190)
+++|||||+|.+ |+.++..|.+.| .+|.+.+.+++....-... ....-++-.+.+.+.++++..
T Consensus 1 m~~ilviGaG~V-----------g~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGAGGV-----------GSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECCchh-----------HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcC
Confidence 368999999975 678899988888 9999998775421110011 112235556778888888854
Q ss_pred CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 167 RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
|+|+....+...... ...+-+.|+.++-.+...- +.+..++.++++|+....
T Consensus 70 --d~VIn~~p~~~~~~i------~ka~i~~gv~yvDts~~~~----~~~~~~~~a~~Agit~v~ 121 (389)
T COG1748 70 --DLVINAAPPFVDLTI------LKACIKTGVDYVDTSYYEE----PPWKLDEEAKKAGITAVL 121 (389)
T ss_pred --CEEEEeCCchhhHHH------HHHHHHhCCCEEEcccCCc----hhhhhhHHHHHcCeEEEc
Confidence 999987765444332 3356678999883322111 136678889999977543
No 254
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.74 E-value=0.25 Score=57.58 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=77.6
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-CeEEEecCCCCCcCccccC----CcceeecCCcHHHHHHHhhhc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-YETIMMNSNPETVSTDYDT----SDRLYFEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-~~vi~v~~~p~~~s~~~~~----ad~~~~~p~~~e~v~~i~~~~ 717 (1190)
+++|||||+|. +|+.+ +..|.+.| .+|.+.+.+++....-... ..-..++-.+.+++.++++..
T Consensus 1 m~~ilviGaG~--Vg~~v---------a~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGAGG--VGSVV---------AHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECCch--hHHHH---------HHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcC
Confidence 46899999998 66655 77777777 9999999886554322111 111222334577888888765
Q ss_pred CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 718 RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
|.||..........+.+.+- +.| +.++-++..- .+.+..+..+++.|+..
T Consensus 70 --d~VIn~~p~~~~~~i~ka~i----------~~g---v~yvDts~~~----~~~~~~~~~a~~Agit~ 119 (389)
T COG1748 70 --DLVINAAPPFVDLTILKACI----------KTG---VDYVDTSYYE----EPPWKLDEEAKKAGITA 119 (389)
T ss_pred --CEEEEeCCchhhHHHHHHHH----------HhC---CCEEEcccCC----chhhhhhHHHHHcCeEE
Confidence 88887777776778888887 888 8777533221 12377888899999765
No 255
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.18 E-value=1.6 Score=48.32 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.+++|+|+|+. ++.+++-++.+||+|+++|+.+.
T Consensus 101 ~~L~IfGaG~v-----------a~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHV-----------GRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHH-----------HHHHHHHHhcCCCEEEEEeCCcc
Confidence 59999999976 67899999999999999998876
No 256
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.05 E-value=0.28 Score=61.63 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
..+|+|+|.|+. |+.+++.|++.|++++++|.|++......+....++....+...+++-+.-++.|++
T Consensus 400 ~~~vII~G~Gr~-----------G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRF-----------GQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchH-----------HHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 358999999975 788999999999999999999875433233334556666555666666666788999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCC
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKT 228 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipv 228 (1190)
+.+.+....-...... +.+. .|+...+.+++|+...+ .|++.|...
T Consensus 469 v~~~~d~~~n~~i~~~-----~r~~-----~p~~~IiaRa~~~~~~~-~L~~~Ga~~ 514 (601)
T PRK03659 469 VITCNEPEDTMKIVEL-----CQQH-----FPHLHILARARGRVEAH-ELLQAGVTQ 514 (601)
T ss_pred EEEeCCHHHHHHHHHH-----HHHH-----CCCCeEEEEeCCHHHHH-HHHhCCCCE
Confidence 9888754322121111 1221 12333445666665554 556667663
No 257
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=89.91 E-value=0.93 Score=50.87 Aligned_cols=96 Identities=27% Similarity=0.412 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhC-CcEEEecCcCCCCc-----------ceEEeCCHHHHHHHHHHhH
Q 001014 772 RERFNAIIKELSIEQPKGGIAKSEADALAIAKEIG-YPVVVRPSYVLGGR-----------AMEIVYTDETLVTYLENAV 839 (1190)
Q Consensus 772 K~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~ig-yPvvvKP~~~~gg~-----------Gv~iv~~~~el~~~~~~~~ 839 (1190)
-+...++|+++|+.+|++.++.|.||+.+.++++| -.+|||.-.-.||| ||.+|.+++|.++.-....
T Consensus 27 ey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~qmi 106 (434)
T KOG2799|consen 27 EYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVASQMI 106 (434)
T ss_pred HHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHHHhh
Confidence 34457899999999999999999999999999987 46999997666554 6899999998877665532
Q ss_pred hh------C-CC----CcEEEEEecCCcceEEEeEEecC
Q 001014 840 EV------D-PE----RPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 840 ~~------~-~~----~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
.. . +. ..++|-+....-.|+.+..+-|.
T Consensus 107 G~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr 145 (434)
T KOG2799|consen 107 GKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDR 145 (434)
T ss_pred cceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhc
Confidence 11 0 11 23444444434456666666543
No 258
>PRK05849 hypothetical protein; Provisional
Probab=89.27 E-value=16 Score=47.02 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccCHHHHHHHHHH--cCCCCCCceeecC------HHHHHHHHHHh--CCcEEEecCcCC------CCcce--EEe--C--
Q 001014 769 AEDRERFNAIIKE--LSIEQPKGGIAKS------EADALAIAKEI--GYPVVVRPSYVL------GGRAM--EIV--Y-- 826 (1190)
Q Consensus 769 ~~DK~~~~~~l~~--~gIp~p~~~~~~s------~~e~~~~~~~i--gyPvvvKP~~~~------gg~Gv--~iv--~-- 826 (1190)
+..|...-..|+. .|.++|+..++.- .+.+.+.+... +-|++|+.+... +..|. .+. .
T Consensus 8 ~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~ 87 (783)
T PRK05849 8 FQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNAD 87 (783)
T ss_pred cchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCC
Confidence 3446666677777 7899999876654 34444443332 469999987543 23333 232 2
Q ss_pred CHHHHHHHHHHhHhhC---CCCcEEEEEecCCcceEEEeEEecC-CCcEEEEeeeeeee---cccccccccc----ccc-
Q 001014 827 TDETLVTYLENAVEVD---PERPVLIDKYLSDAIEIDVDALADS-CGNVVIGGIMEHIE---QAGVHSGDSA----CMI- 894 (1190)
Q Consensus 827 ~~~el~~~~~~~~~~~---~~~~vliEefI~~g~E~~v~v~~d~-~G~v~~~~i~e~~~---~~g~~~gd~~----~~~- 894 (1190)
+.++|..++...+... ++..|+||+.|.+..---|..-+|. +|....+ .+... ...+-+|... ...
T Consensus 88 ~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~--iey~~~G~ge~VVsG~~t~~~~~~~~ 165 (783)
T PRK05849 88 SKDQLLKAIEKVIASYGTSKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYV--INYDESGSTDSVTSGSGGSATTVYHY 165 (783)
T ss_pred cHHHHHHHHHHHHHhhCCCCCCeEEEEeCccCCCceEEEEECCCCCCCCceE--EEEcCCCCCcceecccCCCCceeeec
Confidence 2348888888876544 4457999999942122222222332 2211111 11111 0112222211 100
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 895 -PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 895 -p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
....++++...++.+.+.++-+.+|. -+..|||.+|.+|++|++-+=|
T Consensus 166 ~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfaid~~g~L~lLQ~RP 214 (783)
T PRK05849 166 RDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAIDEKEELYILQVRP 214 (783)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEEccCCEEEEEEccC
Confidence 12356788889999999888888764 3889999998889999999766
No 259
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.25 E-value=1 Score=56.34 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
..+|+|+|.|+. |+.+++.|++.|++++++|.|++......+.....+....+.+.+.+-+.-++.|.+
T Consensus 417 ~~hiiI~G~G~~-----------G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 417 CNHALLVGYGRV-----------GSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCCEEEECCChH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 468999999976 789999999999999999998765432223333445555444555555666688988
Q ss_pred EecCCC
Q 001014 172 LPTMGG 177 (1190)
Q Consensus 172 ip~~~g 177 (1190)
+...+.
T Consensus 486 iv~~~~ 491 (558)
T PRK10669 486 LLTIPN 491 (558)
T ss_pred EEEcCC
Confidence 766553
No 260
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.09 E-value=2 Score=41.55 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=56.3
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc--cc-CC------cceee-c-CCcHHHHHH
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD--YD-TS------DRLYF-E-PLTVEDVLN 712 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~--~~-~a------d~~~~-~-p~~~e~v~~ 712 (1190)
|+|.|+|...+ -++ -+..+.+.+++.|++++.+++....+.-. |. +. |-..+ . +....++++
T Consensus 1 ksiAVvGaS~~-~~~------~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDN-PGK------FGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVD 73 (116)
T ss_dssp -EEEEET--SS-TTS------HHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHH
T ss_pred CEEEEEcccCC-CCC------hHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHH
Confidence 68999998764 121 26778999999999999999886553221 11 11 11111 1 122455555
Q ss_pred HhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCH
Q 001014 713 VIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSP 763 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~ 763 (1190)
-+...++..++.+.+.. ...+.+.++ +.| ++++||+-
T Consensus 74 ~~~~~g~~~v~~~~g~~-~~~~~~~a~----------~~g---i~vigp~C 110 (116)
T PF13380_consen 74 EAAALGVKAVWLQPGAE-SEELIEAAR----------EAG---IRVIGPNC 110 (116)
T ss_dssp HHHHHT-SEEEE-TTS---HHHHHHHH----------HTT----EEEESS-
T ss_pred HHHHcCCCEEEEEcchH-HHHHHHHHH----------HcC---CEEEeCCc
Confidence 56666888888877633 335666666 788 99998764
No 261
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.70 E-value=3.6 Score=48.99 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC---------CccCcceEEECCCCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT---------DPGLADRTYITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~---------~~~~ad~~~i~p~~~~~v~~ 161 (1190)
..++|||+|+.. +-|+.+++.|.+.|++|+++..++..... ...-......+-.+.+.+.+
T Consensus 59 ~~~kVLVtGatG----------~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 128 (390)
T PLN02657 59 KDVTVLVVGATG----------YIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRK 128 (390)
T ss_pred CCCEEEEECCCc----------HHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHH
Confidence 456999999853 34889999999999999999876532210 00111122244457788888
Q ss_pred HHHHc--CCCEEEecCC
Q 001014 162 VLEKE--RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~--~~d~Vip~~~ 176 (1190)
+++.. ++|.|+.+.+
T Consensus 129 ~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 129 VLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHhCCCCcEEEECCc
Confidence 88765 6999986554
No 262
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=2.3 Score=49.98 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCe-eecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC
Q 001014 229 PPS-GIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL 297 (1190)
Q Consensus 229 p~~-~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~ 297 (1190)
|++ ..-.+.+++.+..++-.+--+||||...+-|.|+++++...++.. ..+.+||+||+
T Consensus 284 PrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk----------~rpLvvQ~yie 343 (662)
T KOG2156|consen 284 PRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK----------DRPLVVQKYIE 343 (662)
T ss_pred ceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC----------cccHHHHHHhh
Confidence 554 444567778777766332448999999999999999998877432 44677777776
No 263
>PLN02572 UDP-sulfoquinovose synthase
Probab=88.16 E-value=2.7 Score=50.94 Aligned_cols=74 Identities=20% Similarity=0.390 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC-C----CC---------cc---------Cc
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI-M----TD---------PG---------LA 146 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~-~----~~---------~~---------~a 146 (1190)
.++++|||+||.. +-|..+++.|.+.|++|++++...... . .. .. ..
T Consensus 45 ~~~k~VLVTGatG----------fIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (442)
T PLN02572 45 SKKKKVMVIGGDG----------YCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKE 114 (442)
T ss_pred ccCCEEEEECCCc----------HHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCc
Confidence 3457899999864 338999999999999999986321100 0 00 00 00
Q ss_pred ceEEECC-CCHHHHHHHHHHcCCCEEEe
Q 001014 147 DRTYITP-MTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 147 d~~~i~p-~~~~~v~~i~~~~~~d~Vip 173 (1190)
-..+... .+.+.+.++++..++|.|+-
T Consensus 115 v~~v~~Dl~d~~~v~~~l~~~~~D~ViH 142 (442)
T PLN02572 115 IELYVGDICDFEFLSEAFKSFEPDAVVH 142 (442)
T ss_pred ceEEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 1122223 36678888888778998885
No 264
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.08 E-value=5.6 Score=49.04 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-------------CccCc--ceEE-ECCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-------------DPGLA--DRTY-ITPM 154 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-------------~~~~a--d~~~-i~p~ 154 (1190)
+.++|||+|+.. +-|+.+++.|.+.|++|+++..+...... ..... -..+ .+-.
T Consensus 79 ~gKvVLVTGATG----------gIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 79 DEDLAFVAGATG----------KVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCEEEEECCCC----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 457899999864 33889999999999999998776542110 00000 0122 2333
Q ss_pred CHHHHHHHHHHcCCCEEEecCCC
Q 001014 155 TPELVEQVLEKERPDALLPTMGG 177 (1190)
Q Consensus 155 ~~~~v~~i~~~~~~d~Vip~~~g 177 (1190)
+.+.+.+.+. ++|+|+...+.
T Consensus 149 D~esI~~aLg--giDiVVn~AG~ 169 (576)
T PLN03209 149 KPDQIGPALG--NASVVICCIGA 169 (576)
T ss_pred CHHHHHHHhc--CCCEEEEcccc
Confidence 5566655443 78998877653
No 265
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=87.61 E-value=0.38 Score=54.66 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred EEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeE
Q 001014 847 VLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNC 926 (1190)
Q Consensus 847 vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~i 926 (1190)
..++++.+.++++.+..+++-.|.+..++..+.+....+..++. .|. .+++.+..-.++.....+.+-|.+.+
T Consensus 3 l~~~~~~~~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~---~~a----~~I~~ka~il~k~t~~~F~~l~~~gv 75 (373)
T KOG2835|consen 3 LTTESLDPLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDA---AMA----NSIQGKAAILNKITSFVFELLGEAGI 75 (373)
T ss_pred cccccccchhhhhheeeeeeecccccCCCeeEEeeccccchhhh---hhh----cchhhHHHHHHHhhhhhHhhhhhhhh
Confidence 45677888889999999988777777778887776544443322 222 34445555455555555556677788
Q ss_pred EEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCC
Q 001014 927 QYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLN 974 (1190)
Q Consensus 927 ef~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~ 974 (1190)
+.+++.+++....|++||.....+++...+-.+.+.-..+...+.+..
T Consensus 76 ~~~~~~~~~~t~~~~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~ 123 (373)
T KOG2835|consen 76 ETAFTEQCGETAFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRF 123 (373)
T ss_pred heeeccccchhhhhcCCCCCCCceeEEeecchhhHHHhCccCccceee
Confidence 988866777789999999999999999999999999888888777664
No 266
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=87.40 E-value=0.14 Score=62.16 Aligned_cols=177 Identities=13% Similarity=0.178 Sum_probs=96.3
Q ss_pred EEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC---HHHHHHHHH----------HhCCcEEEecCcCCCCcceE
Q 001014 757 RIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS---EADALAIAK----------EIGYPVVVRPSYVLGGRAME 823 (1190)
Q Consensus 757 ~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s---~~e~~~~~~----------~igyPvvvKP~~~~gg~Gv~ 823 (1190)
|++-.+..--.++.|+....++|+..||++|++..+.. -++..++++ .+.-|+|=||+++-. ..|+
T Consensus 116 PFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~ED-HNIY 194 (1018)
T KOG1057|consen 116 PFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAED-HNIY 194 (1018)
T ss_pred CeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCccc-ccEE
Confidence 55556777778899999999999999999999977653 122223332 256799999987631 1111
Q ss_pred EeCCH---HHHHHHHHHhH----------hhCCCCcEEEEEecC-CcceEEEeEEecC--CCcEEEEeeeeeeecccccc
Q 001014 824 IVYTD---ETLVTYLENAV----------EVDPERPVLIDKYLS-DAIEIDVDALADS--CGNVVIGGIMEHIEQAGVHS 887 (1190)
Q Consensus 824 iv~~~---~el~~~~~~~~----------~~~~~~~vliEefI~-~g~E~~v~v~~d~--~G~v~~~~i~e~~~~~g~~~ 887 (1190)
|-+-. .--...|+..- ..-..+.++-|+|++ +|..+-|-.++-. +-+..-.++.+-+-....+.
T Consensus 195 IYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~G 274 (1018)
T KOG1057|consen 195 IYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDG 274 (1018)
T ss_pred EEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCC
Confidence 11100 00111222210 111245789999994 3433333333210 00111111111111111111
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 888 GDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 888 gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
...-+|. .++++. +.+|.+++-+++- -++++|++- .+|.=||+++|.
T Consensus 275 --KEvRYpv-~Ls~~E----K~iA~KVciAF~Q-~VCGFDLLR-a~G~SYVcDVNG 321 (1018)
T KOG1057|consen 275 --KEVRYPV-ILNSSE----KQIARKVCIAFKQ-TVCGFDLLR-ANGKSYVCDVNG 321 (1018)
T ss_pred --ceeecee-ecChhh----HHHHhHHHhhccc-cccchHHhh-cCCceEEEeccc
Confidence 1122233 455532 4578888888874 577789888 899999999996
No 267
>CHL00194 ycf39 Ycf39; Provisional
Probab=87.35 E-value=8.4 Score=44.33 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=46.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~V 171 (1190)
|||||+|+.. +-|+.+++.|.+.|++|+++..++..........-+.+. +-.+.+.+.+.++ ++|+|
T Consensus 1 MkIlVtGatG----------~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~V 68 (317)
T CHL00194 1 MSLLVIGATG----------TLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAI 68 (317)
T ss_pred CEEEEECCCc----------HHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEE
Confidence 3899999753 448999999999999999997664321100001112222 2346667777665 78998
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+...+
T Consensus 69 i~~~~ 73 (317)
T CHL00194 69 IDAST 73 (317)
T ss_pred EECCC
Confidence 86543
No 268
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.34 E-value=0.64 Score=58.66 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=70.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
.++|+|+|.|.. |+.+++.|++.|++++++|.|++......+....+|....+..++++-+.-.+.|++
T Consensus 400 ~~~vII~G~Gr~-----------G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRF-----------GQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChH-----------HHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 368999999975 788999999999999999999875432233333455555544555555555678889
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp 229 (1190)
+.+.+....-...... +.+. .|+...+.+++|+.... .|++.|....
T Consensus 469 vv~~~d~~~n~~i~~~-----ar~~-----~p~~~iiaRa~d~~~~~-~L~~~Gad~v 515 (621)
T PRK03562 469 INAIDDPQTSLQLVEL-----VKEH-----FPHLQIIARARDVDHYI-RLRQAGVEKP 515 (621)
T ss_pred EEEeCCHHHHHHHHHH-----HHHh-----CCCCeEEEEECCHHHHH-HHHHCCCCEE
Confidence 8887653221111111 1111 12333345566665543 5556666643
No 269
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=87.24 E-value=1 Score=46.44 Aligned_cols=130 Identities=16% Similarity=0.252 Sum_probs=84.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeecc----ccCCCCCCCCcEEEEECCCCcccC
Q 001014 582 FSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYD----FECESAPTQKKKVLILGGGPNRIG 657 (1190)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~----~~~~~~~~~~~kVlIlG~G~~rig 657 (1190)
-|.++||+..+++...||+=- +|-|||- +..|=|-.=. -.+..-.++.-+|+|+|.|. +|
T Consensus 33 vsS~els~~~~vdsatIRrDf-------------SYFG~lG-krG~GYnV~~L~~ff~~~Lg~~~~tnviiVG~Gn--lG 96 (211)
T COG2344 33 VSSKELSEALGVDSATIRRDF-------------SYFGELG-KRGYGYNVKYLRDFFDDLLGQDKTTNVIIVGVGN--LG 96 (211)
T ss_pred ecHHHHHHHhCCCHHHHhhhh-------------HHHHhcC-CCCCCccHHHHHHHHHHHhCCCcceeEEEEccCh--HH
Confidence 467889999999999988732 2334443 2233331100 00111123456899999998 67
Q ss_pred CCcccchhHHHHHHHHHhCCCeEEEe-cCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchhhhhhh
Q 001014 658 QGIEFDYCCCHTSFSLQSAGYETIMM-NSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSL 736 (1190)
Q Consensus 658 ~~~efd~~~~~~~~al~~~G~~vi~v-~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~ 736 (1190)
+++ ---.-.++.|++++++ |.+|+.+.+. +.| + .-.+++++...+++.+++..|.+.....+...++
T Consensus 97 ~Al-------l~Y~f~~~~~~~iv~~FDv~~~~VG~~--~~~-v--~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad 164 (211)
T COG2344 97 RAL-------LNYNFSKKNGMKIVAAFDVDPDKVGTK--IGD-V--PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVAD 164 (211)
T ss_pred HHH-------hcCcchhhcCceEEEEecCCHHHhCcc--cCC-e--eeechHHHHHHHHhcCccEEEEEccHHHHHHHHH
Confidence 754 0012245788888754 6677765554 344 1 1235889999999999999999898888889999
Q ss_pred hHH
Q 001014 737 PIH 739 (1190)
Q Consensus 737 ~l~ 739 (1190)
.|.
T Consensus 165 ~Lv 167 (211)
T COG2344 165 RLV 167 (211)
T ss_pred HHH
Confidence 998
No 270
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=86.79 E-value=4.1 Score=44.06 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=79.4
Q ss_pred HHHHHhcC--C-CHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCCCCCcEEEEEC
Q 001014 574 FYEVKRRG--F-SDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAPTQKKKVLILG 650 (1190)
Q Consensus 574 l~~~k~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~kVlIlG 650 (1190)
|...+..| + |-.++|+..|++...||+--..++..- .+-+| -...+++...+. -.......+|+|+|
T Consensus 22 l~~l~~~~~~~vs~~~L~~~~~v~~~tirrDl~~l~~~G-----~~~~g---y~v~~l~~~~~~--~l~~~~~~rV~IIG 91 (213)
T PRK05472 22 LKELKEEGVERVSSKELAEALGVDSAQIRKDLSYFGEFG-----KRGVG---YNVEELLEFIEK--ILGLDRTWNVALVG 91 (213)
T ss_pred HHHHHHcCCcEEeHHHHHHHhCcCHHHHHHHHHHHHhcC-----CCCCC---eeHHHHHHHHHH--HhCCCCCcEEEEEC
Confidence 34455556 3 678889999999988888655543211 01111 011111111111 11112456899999
Q ss_pred CCCcccCCCcccchhHHHHHHH--HHhCCCeEEE-ecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccC
Q 001014 651 GGPNRIGQGIEFDYCCCHTSFS--LQSAGYETIM-MNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFG 727 (1190)
Q Consensus 651 ~G~~rig~~~efd~~~~~~~~a--l~~~G~~vi~-v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g 727 (1190)
.|. +|+ .+++. ....|++++. +|.+|+...... ...-. ...+++.++++..++|.|+.+..
T Consensus 92 aG~--iG~---------~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i---~g~~v--~~~~~l~~li~~~~iD~ViIa~P 155 (213)
T PRK05472 92 AGN--LGR---------ALLNYNGFEKRGFKIVAAFDVDPEKIGTKI---GGIPV--YHIDELEEVVKENDIEIGILTVP 155 (213)
T ss_pred CCH--HHH---------HHHHhhhcccCCcEEEEEEECChhhcCCEe---CCeEE--cCHHHHHHHHHHCCCCEEEEeCC
Confidence 998 444 33443 3467898885 566665443221 11101 24677888888889999998877
Q ss_pred CchhhhhhhhHH
Q 001014 728 GQTPLKLSLPIH 739 (1190)
Q Consensus 728 ~~~~~~la~~l~ 739 (1190)
......+...+.
T Consensus 156 ~~~~~~i~~~l~ 167 (213)
T PRK05472 156 AEAAQEVADRLV 167 (213)
T ss_pred chhHHHHHHHHH
Confidence 665556666665
No 271
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=86.57 E-value=5.2 Score=43.14 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCc-EEEecCcCCCCcc-----------eEEeCCHHHHHHHHHHhH-
Q 001014 773 ERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYP-VVVRPSYVLGGRA-----------MEIVYTDETLVTYLENAV- 839 (1190)
Q Consensus 773 ~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyP-vvvKP~~~~gg~G-----------v~iv~~~~el~~~~~~~~- 839 (1190)
+..+++|+++|+.+-+|.+.++..++.+.++.++-| .|+|.....||+| |.+-.+....-+..++..
T Consensus 25 fQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qMIG 104 (412)
T KOG1447|consen 25 FQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQMIG 104 (412)
T ss_pred hhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHHHHh
Confidence 456789999999999999999999999999998865 7999977666653 566677777766666531
Q ss_pred -----hhCCC-----CcEEEEEecCCcceEEEeEEecC--CCcEEEEe
Q 001014 840 -----EVDPE-----RPVLIDKYLSDAIEIDVDALADS--CGNVVIGG 875 (1190)
Q Consensus 840 -----~~~~~-----~~vliEefI~~g~E~~v~v~~d~--~G~v~~~~ 875 (1190)
...+. ..++|-+-++-.+|--+-++.|. +|-+++..
T Consensus 105 ~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaS 152 (412)
T KOG1447|consen 105 YRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVAS 152 (412)
T ss_pred hhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEec
Confidence 12222 24677777766777666666654 45555444
No 272
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=2.4 Score=49.85 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=40.4
Q ss_pred ceeecCHHHHHHHHHH-hCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC
Q 001014 789 GGIAKSEADALAIAKE-IGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS 854 (1190)
Q Consensus 789 ~~~~~s~~e~~~~~~~-igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~ 854 (1190)
|..-.+.+++.+..++ -.--+||||-...-|.|+++++...++ ..+.|++||+||+
T Consensus 287 yilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~----------pk~rpLvvQ~yie 343 (662)
T KOG2156|consen 287 YILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQF----------PKDRPLVVQKYIE 343 (662)
T ss_pred eeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhC----------CCcccHHHHHHhh
Confidence 3445667777776655 222289999999999999999988764 3456777777774
No 273
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=84.52 E-value=1.5 Score=49.81 Aligned_cols=60 Identities=37% Similarity=0.603 Sum_probs=42.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|||||+|+.. +-|..+.+.|++.|++++.++... +.-.+.+.+.++++..+||+|+
T Consensus 1 MriLI~GasG----------~lG~~l~~~l~~~~~~v~~~~r~~--------------~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASG----------FLGSALARALKERGYEVIATSRSD--------------LDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTS----------HHHHHHHHHHTTTSEEEEEESTTC--------------S-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCC----------HHHHHHHHHHhhCCCEEEEeCchh--------------cCCCCHHHHHHHHHHhCCCeEe
Confidence 4899999643 238899999999999999985441 1123567889999999999999
Q ss_pred ecCC
Q 001014 173 PTMG 176 (1190)
Q Consensus 173 p~~~ 176 (1190)
-+.+
T Consensus 57 n~aa 60 (286)
T PF04321_consen 57 NCAA 60 (286)
T ss_dssp E---
T ss_pred ccce
Confidence 6653
No 274
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.48 E-value=1.3 Score=42.60 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=44.7
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCEEEe
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~Vip 173 (1190)
|+|+|.|.. |+.+++.|++.+.++++++.++............++. ++.+.+.+. -+.-.+.+.++.
T Consensus 1 vvI~G~g~~-----------~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~-~a~i~~a~~vv~ 68 (116)
T PF02254_consen 1 VVIIGYGRI-----------GREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLE-RAGIEKADAVVI 68 (116)
T ss_dssp EEEES-SHH-----------HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHH-HTTGGCESEEEE
T ss_pred eEEEcCCHH-----------HHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHh-hcCccccCEEEE
Confidence 689999965 7899999999888999999887532211111123333 344444443 345567888887
Q ss_pred cCCC
Q 001014 174 TMGG 177 (1190)
Q Consensus 174 ~~~g 177 (1190)
..+.
T Consensus 69 ~~~~ 72 (116)
T PF02254_consen 69 LTDD 72 (116)
T ss_dssp ESSS
T ss_pred ccCC
Confidence 7653
No 275
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=84.32 E-value=4.3 Score=44.90 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=32.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...+++|+|+|+. +..+++-++.+||+|+++|+.++.
T Consensus 99 p~~~L~IfGaG~v-----------a~~la~la~~lGf~V~v~D~R~~~ 135 (246)
T TIGR02964 99 PAPHVVLFGAGHV-----------GRALVRALAPLPCRVTWVDSREAE 135 (246)
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHhcCCCEEEEEeCCccc
Confidence 5689999999995 677799999999999999998773
No 276
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=84.16 E-value=4.4 Score=41.88 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=48.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|||.|||+... .|..+++.+.+.|++|.++..|+.-.......+ -.--+-.+++.+.+.+. +.|+|+
T Consensus 1 mKIaiIgAsG~----------~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~-i~q~Difd~~~~a~~l~--g~DaVI 67 (211)
T COG2910 1 MKIAIIGASGK----------AGSRILKEALKRGHEVTAIVRNASKLAARQGVT-ILQKDIFDLTSLASDLA--GHDAVI 67 (211)
T ss_pred CeEEEEecCch----------hHHHHHHHHHhCCCeeEEEEeChHhccccccce-eecccccChhhhHhhhc--CCceEE
Confidence 48999998743 378999999999999999998886543211110 00011234455555554 789999
Q ss_pred ecCCCh
Q 001014 173 PTMGGQ 178 (1190)
Q Consensus 173 p~~~g~ 178 (1190)
..+++.
T Consensus 68 sA~~~~ 73 (211)
T COG2910 68 SAFGAG 73 (211)
T ss_pred EeccCC
Confidence 988854
No 277
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=83.99 E-value=6.2 Score=42.99 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=46.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
..+|+||||=.. ++.+++.|...+...++...............-.....+...|.+.++++++++|.+
T Consensus 2 ~~~ilvlGGT~D-----------ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~ll 70 (257)
T COG2099 2 MMRILLLGGTSD-----------ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLL 70 (257)
T ss_pred CceEEEEeccHH-----------HHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEE
Confidence 468999997553 777788888888554444433332222222333444556778999999999998877
Q ss_pred c
Q 001014 723 I 723 (1190)
Q Consensus 723 i 723 (1190)
|
T Consensus 71 I 71 (257)
T COG2099 71 I 71 (257)
T ss_pred E
Confidence 6
No 278
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.73 E-value=2.7 Score=46.84 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=48.8
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCC-cceeec-CCcHHHHHHHhhhcCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTS-DRLYFE-PLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~a-d~~~~~-p~~~e~v~~i~~~~~~d~ 721 (1190)
.+|||.||-++ | +-|.+.+|.+.|++|+++|+.-........-. -++|.. -.+-+.+.++.++++||+
T Consensus 1 ~~iLVtGGAGY-I---------GSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~ida 70 (329)
T COG1087 1 MKVLVTGGAGY-I---------GSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDA 70 (329)
T ss_pred CeEEEecCcch-h---------HHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCE
Confidence 37999998775 4 55779999999999999997533322111111 134432 345777888899999999
Q ss_pred ccc
Q 001014 722 IIV 724 (1190)
Q Consensus 722 Vi~ 724 (1190)
||-
T Consensus 71 ViH 73 (329)
T COG1087 71 VVH 73 (329)
T ss_pred EEE
Confidence 883
No 279
>PRK05849 hypothetical protein; Provisional
Probab=83.59 E-value=58 Score=42.11 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=102.3
Q ss_pred HhcHHHHHHHHHH--cCCCCCCeeecCC------HHHHHHHHH-HcCCCcEEEecCCCC------CCcceE--E--eCC-
Q 001014 211 AEDRDLFKQAMKT--IGVKTPPSGIGNT------LDECISIAN-EIGEFPLIIRPAFTL------GGTGGG--I--AYN- 270 (1190)
Q Consensus 211 ~~DK~~~k~~l~~--~Gipvp~~~~v~s------~~e~~~~~~-~ig~~PvVVKP~~g~------gg~Gv~--i--v~~- 270 (1190)
+..|...-..|+. .|.++|+.+.+.- .+.+.+.+. .++.-|++|+.+... +..|.+ + +..
T Consensus 8 ~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~ 87 (783)
T PRK05849 8 FQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNAD 87 (783)
T ss_pred cchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCC
Confidence 4456666677777 8999999877754 233333333 322269999986422 223442 2 333
Q ss_pred -HHHHHHHHHHHHhcC---CCCcEEEeeecCCCeeeeEEEEEeC-CCc-EEEEEeeeeeCC----CCccc-ccEEEEe-c
Q 001014 271 -KEEFEAICKAGLAAS---LTSQVLVEKSLLGWKEYELEVMRDL-ADN-VVIICSIENVDP----MGVHT-GDSITVA-P 338 (1190)
Q Consensus 271 -~~el~~~~~~~~~~~---~~~~vlVEe~I~G~~E~sv~v~~d~-~g~-~~~~~~~e~~~~----~g~~~-g~~~~~~-P 338 (1190)
.++|.+++...+... +...|+||+.|.+..--.|-.-+|. .|. ..++-...+-.. .|..+ ...+... .
T Consensus 88 ~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~~~~~~~~~~ 167 (783)
T PRK05849 88 SKDQLLKAIEKVIASYGTSKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGSATTVYHYRD 167 (783)
T ss_pred cHHHHHHHHHHHHHhhCCCCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCCCceeeeccc
Confidence 348999988877543 3457999999974111123333321 111 111100000000 12222 1111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCC
Q 001014 339 AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPR 389 (1190)
Q Consensus 339 a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR 389 (1190)
...++++.++++.+.+.++-+.+|. .+.-|||.+|+ +|++|++-+=|-
T Consensus 168 ~~~l~p~~~~~L~~la~~LE~~fg~--dpqDIEfaid~-~g~L~lLQ~RPi 215 (783)
T PRK05849 168 ALVFKPPRLKKLIELIRELEALFGC--DFLDIEFAIDE-KEELYILQVRPI 215 (783)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCC--CCeeeEEEEcc-CCEEEEEEccCC
Confidence 2237888999999999999888876 47789999976 899999999874
No 280
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.33 E-value=4 Score=48.20 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d 169 (1190)
..|+|||+|+.. |-|..+++.|.+.|++|+.++..+.............+... .+.+.+.++++ ++|
T Consensus 20 ~~~~IlVtGgtG----------fIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D 87 (370)
T PLN02695 20 EKLRICITGAGG----------FIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVD 87 (370)
T ss_pred CCCEEEEECCcc----------HHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh--CCC
Confidence 346999999843 34899999999999999999864322111111112333322 34455555554 689
Q ss_pred EEEecC
Q 001014 170 ALLPTM 175 (1190)
Q Consensus 170 ~Vip~~ 175 (1190)
.|+-..
T Consensus 88 ~Vih~A 93 (370)
T PLN02695 88 HVFNLA 93 (370)
T ss_pred EEEEcc
Confidence 888543
No 281
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=82.64 E-value=0.94 Score=51.45 Aligned_cols=48 Identities=33% Similarity=0.588 Sum_probs=42.5
Q ss_pred eeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecc
Q 001014 1044 VFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKM 1093 (1190)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~ 1093 (1190)
.++|+.| |..+.++++-|.++|++|.|+.|||+.|++.|++++.|.++
T Consensus 7 AllSVsD--KtgLl~La~gL~~~g~~lvaSGGTAk~lrdaG~~V~dVs~i 54 (588)
T KOG2555|consen 7 ALLSVSD--KTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEI 54 (588)
T ss_pred EEEEeec--ccChHHHHhHHHhcCcEEEecCchHHHHHhCCCccchHHhh
Confidence 4566655 66799999999999999999999999999999999988776
No 282
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=82.59 E-value=5.2 Score=52.85 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHC-CCe-------------EEEEccCCCCCCCC-ccC--cceEEECC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYE-------------VILINSNPATIMTD-PGL--ADRTYITP 153 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~-------------vi~v~~~~~~~~~~-~~~--ad~~~i~p 153 (1190)
.+++|+|||+|.+ |...++.|.+. +++ |.+++.++...... ..+ +...-++-
T Consensus 568 ~~~rIlVLGAG~V-----------G~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv 636 (1042)
T PLN02819 568 KSQNVLILGAGRV-----------CRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDV 636 (1042)
T ss_pred cCCcEEEECCCHH-----------HHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeec
Confidence 4679999999954 67788888764 444 66677655321100 001 11122333
Q ss_pred CCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC
Q 001014 154 MTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229 (1190)
Q Consensus 154 ~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp 229 (1190)
.+.+.+.+.++ ++|+|+.+.....+..++. .+-+.|.+++-.+ ....+-..+.+.++++|+..-
T Consensus 637 ~D~e~L~~~v~--~~DaVIsalP~~~H~~VAk------aAieaGkHvv~ek----y~~~e~~~L~e~Ak~AGV~~m 700 (1042)
T PLN02819 637 SDSESLLKYVS--QVDVVISLLPASCHAVVAK------ACIELKKHLVTAS----YVSEEMSALDSKAKEAGITIL 700 (1042)
T ss_pred CCHHHHHHhhc--CCCEEEECCCchhhHHHHH------HHHHcCCCEEECc----CCHHHHHHHHHHHHHcCCEEE
Confidence 46667766666 5999998887655554444 4556788887443 111222345567778887753
No 283
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=82.51 E-value=9.3 Score=42.25 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCC-cHHHHHHHhhhcCCCc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPL-TVEDVLNVIDLERPEG 721 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~-~~e~v~~i~~~~~~d~ 721 (1190)
..+|||+||=.. ++.+++.|.+.|+++++--......... .........+ +.+.+.+++++++++.
T Consensus 2 ~~~IlvlgGT~e-----------gr~la~~L~~~g~~v~~Svat~~g~~~~--~~~~v~~G~l~~~~~l~~~l~~~~i~~ 68 (248)
T PRK08057 2 MPRILLLGGTSE-----------ARALARALAAAGVDIVLSLAGRTGGPAD--LPGPVRVGGFGGAEGLAAYLREEGIDL 68 (248)
T ss_pred CceEEEEechHH-----------HHHHHHHHHhCCCeEEEEEccCCCCccc--CCceEEECCCCCHHHHHHHHHHCCCCE
Confidence 367999997553 7788999999999887654333222111 2233445667 8999999999999998
Q ss_pred cc
Q 001014 722 II 723 (1190)
Q Consensus 722 Vi 723 (1190)
||
T Consensus 69 VI 70 (248)
T PRK08057 69 VI 70 (248)
T ss_pred EE
Confidence 87
No 284
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.50 E-value=2.6 Score=37.63 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=40.3
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
||+|+|+|.+ |.+++..|++.|.+|.++...+.... ..| +...+.+.+.+++.+++..+
T Consensus 1 ~vvViGgG~i-----------g~E~A~~l~~~g~~vtli~~~~~~~~----~~~-----~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFI-----------GIELAEALAELGKEVTLIERSDRLLP----GFD-----PDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHH-----------HHHHHHHHHHTTSEEEEEESSSSSST----TSS-----HHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHH-----------HHHHHHHHHHhCcEEEEEeccchhhh----hcC-----HHHHHHHHHHHHHCCCEEEe
Confidence 6899999965 67899999999999999987665321 111 11123456666666666554
No 285
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.37 E-value=3.3 Score=49.04 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=65.3
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
++.|+|+|.|.. +..+++.|++.|+++++++.+....... +-.+-.+-++ +-+++++-+.-++.++|
T Consensus 240 k~HvII~G~g~l-----------g~~v~~~L~~~g~~vvVId~d~~~~~~~-~g~~vI~GD~-td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 240 KDHFIICGHSPL-----------AINTYLGLRQRGQAVTVIVPLGLEHRLP-DDADLIPGDS-SDSAVLKKAGAARARAI 306 (393)
T ss_pred CCeEEEECCChH-----------HHHHHHHHHHCCCCEEEEECchhhhhcc-CCCcEEEeCC-CCHHHHHhcCcccCCEE
Confidence 578999999884 4556999999999999998763211111 1122223344 34566666666788888
Q ss_pred ccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 723 IVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 723 i~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
++..+.. .+..++.... +.+ |+...+..+.|... .+.+++.|..
T Consensus 307 I~~t~dD~~Nl~ivL~ar----------~l~--------p~~kIIa~v~~~~~-~~~L~~~GaD 351 (393)
T PRK10537 307 LALRDNDADNAFVVLAAK----------EMS--------SDVKTVAAVNDSKN-LEKIKRVHPD 351 (393)
T ss_pred EEcCCChHHHHHHHHHHH----------HhC--------CCCcEEEEECCHHH-HHHHHhcCCC
Confidence 8766654 3433333333 222 34444555555543 3555667654
No 286
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=82.37 E-value=3.5 Score=41.15 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=38.5
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEec
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPT 174 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~ 174 (1190)
++|+|+|+. ++.+++-++.+|++|+++|+.+.... .++... ..+.+.+.+.+.-..-++|+.+
T Consensus 1 L~I~GaG~v-----------a~al~~la~~lg~~v~v~d~r~e~~~----~~~~~~--~~~~~~~~~~~~~~~~t~Vv~t 63 (136)
T PF13478_consen 1 LVIFGAGHV-----------ARALARLAALLGFRVTVVDPRPERFP----EADEVI--CIPPDDILEDLEIDPNTAVVMT 63 (136)
T ss_dssp EEEES-STC-----------HHHHHHHHHHCTEEEEEEES-CCC-T----TSSEEE--CSHHHHHHHHC-S-TT-EEE--
T ss_pred CEEEeCcHH-----------HHHHHHHHHhCCCEEEEEcCCccccC----CCCccE--ecChHHHHhccCCCCCeEEEEc
Confidence 579999976 68899999999999999999876332 333322 2233444333333334566544
Q ss_pred CCChhH
Q 001014 175 MGGQTA 180 (1190)
Q Consensus 175 ~~g~~~ 180 (1190)
.+....
T Consensus 64 h~h~~D 69 (136)
T PF13478_consen 64 HDHELD 69 (136)
T ss_dssp S-CCCH
T ss_pred CCchhH
Confidence 443343
No 287
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=82.17 E-value=2.8 Score=42.45 Aligned_cols=66 Identities=26% Similarity=0.310 Sum_probs=56.9
Q ss_pred ceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1014 GEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1014 G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
|-|||...|++-+..-+.....+.+|.+ +-+...+++++.+.++++.+.++|.+ |++.+|.+.+|-
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~d--v~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp 68 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYE--LRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP 68 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeE--EEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH
Confidence 5578888999988877777788888876 77778999999999999999999998 888899888874
No 288
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.76 E-value=3.9 Score=54.01 Aligned_cols=165 Identities=13% Similarity=0.121 Sum_probs=95.1
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCe-------------EEEecCCCCCcCc---cccCCcceee
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYE-------------TIMMNSNPETVST---DYDTSDRLYF 702 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~-------------vi~v~~~p~~~s~---~~~~ad~~~~ 702 (1190)
....|+|+|||+|- +| ...++.|.+. +++ +.+.|.+++.... .+.-..-.-.
T Consensus 566 ~~~~~rIlVLGAG~--VG---------~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~l 634 (1042)
T PLN02819 566 TKKSQNVLILGAGR--VC---------RPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQL 634 (1042)
T ss_pred cccCCcEEEECCCH--HH---------HHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEe
Confidence 34578999999988 33 3446666543 444 7777766543221 1100010111
Q ss_pred cCCcHHHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHc
Q 001014 703 EPLTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKEL 782 (1190)
Q Consensus 703 ~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~ 782 (1190)
+-.+.+++.++++. +|+|+..........++..+- +.| ++++..+ ....+-..+.+.+++.
T Consensus 635 Dv~D~e~L~~~v~~--~DaVIsalP~~~H~~VAkaAi----------eaG---kHvv~ek----y~~~e~~~L~e~Ak~A 695 (1042)
T PLN02819 635 DVSDSESLLKYVSQ--VDVVISLLPASCHAVVAKACI----------ELK---KHLVTAS----YVSEEMSALDSKAKEA 695 (1042)
T ss_pred ecCCHHHHHHhhcC--CCEEEECCCchhhHHHHHHHH----------HcC---CCEEECc----CCHHHHHHHHHHHHHc
Confidence 22346677766654 899998888877778888887 888 7776544 1222334566778889
Q ss_pred CCCC-CCceeecCHHH--HHHHHHHh----CCcEEEecCcCC--------CCcceEEeCCHHHHHHH
Q 001014 783 SIEQ-PKGGIAKSEAD--ALAIAKEI----GYPVVVRPSYVL--------GGRAMEIVYTDETLVTY 834 (1190)
Q Consensus 783 gIp~-p~~~~~~s~~e--~~~~~~~i----gyPvvvKP~~~~--------gg~Gv~iv~~~~el~~~ 834 (1190)
|+.. +.....-..+. +.+.+++. |-+..++-..|+ .-.+-.+-+|++.+-..
T Consensus 696 GV~~m~e~GlDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~ 762 (1042)
T PLN02819 696 GITILCEMGLDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKA 762 (1042)
T ss_pred CCEEEECCccCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHH
Confidence 9886 55554344555 44455554 555544443332 33344555666665443
No 289
>PRK09620 hypothetical protein; Provisional
Probab=81.58 E-value=6 Score=43.26 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=45.5
Q ss_pred CCEEEEEcCCcccccccccc-c-----------hHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceEEECC-CC-H
Q 001014 92 LRKILILGAGPIVIGQACEF-D-----------YSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRTYITP-MT-P 156 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~-d-----------~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~i~p-~~-~ 156 (1190)
.++|||.+|| ..|. | +-|..++++|.+.|++|++++......... ........+.. .+ .
T Consensus 3 gk~vlITaG~------T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~ 76 (229)
T PRK09620 3 GKKVLITSGG------CLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQ 76 (229)
T ss_pred CCEEEEeCCC------ccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHH
Confidence 4799999988 4555 3 669999999999999999997532211100 00011111211 11 1
Q ss_pred HHHHHHHHHcCCCEEEe
Q 001014 157 ELVEQVLEKERPDALLP 173 (1190)
Q Consensus 157 ~~v~~i~~~~~~d~Vip 173 (1190)
+.+.+++++.++|+|+-
T Consensus 77 ~~l~~~~~~~~~D~VIH 93 (229)
T PRK09620 77 DKMKSIITHEKVDAVIM 93 (229)
T ss_pred HHHHHHhcccCCCEEEE
Confidence 34555555567998884
No 290
>PRK12828 short chain dehydrogenase; Provisional
Probab=81.54 E-value=5.8 Score=43.03 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC-----CCccCcceEEECCCCHHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM-----TDPGLADRTYITPMTPELVEQVLEK 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~-----~~~~~ad~~~i~p~~~~~v~~i~~~ 165 (1190)
..++|||+|+... -|+.+++.|.+.|++|++++.++.... ...........+..+.+.+.+.++.
T Consensus 6 ~~k~vlItGatg~----------iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 6 QGKVVAITGGFGG----------LGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCEEEEECCCCc----------HhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHH
Confidence 3579999998642 278899999999999999987653210 0001112222333455665555543
Q ss_pred -----cCCCEEEecCC
Q 001014 166 -----ERPDALLPTMG 176 (1190)
Q Consensus 166 -----~~~d~Vip~~~ 176 (1190)
.++|+|+-..+
T Consensus 76 ~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 76 VNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHhCCcCEEEECCc
Confidence 26898886554
No 291
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=81.21 E-value=9.1 Score=37.94 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=42.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccCCcceeec-----CCcHHHHHHHhhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDTSDRLYFE-----PLTVEDVLNVIDL 716 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~ad~~~~~-----p~~~e~v~~i~~~ 716 (1190)
.+||+|+|.|.. +..+++.|.+.|+ ++.++|.+.-+.. ++....++. ....+.+.+.+++
T Consensus 2 ~~~v~iiG~G~v-----------Gs~va~~L~~~Gv~~i~lvD~d~v~~~---nl~r~~~~~~~~vG~~Ka~~~~~~l~~ 67 (135)
T PF00899_consen 2 NKRVLIIGAGGV-----------GSEVAKNLARSGVGKITLVDDDIVEPS---NLNRQFLYTEEDVGKNKAEAAKERLQE 67 (135)
T ss_dssp T-EEEEESTSHH-----------HHHHHHHHHHHTTSEEEEEESSBB-GG---GCCTCTTS-GGGTTSBHHHHHHHHHHH
T ss_pred CCEEEEECcCHH-----------HHHHHHHHHHhCCCceeecCCcceeec---ccccccccccccchhHHHHHHHHHHHH
Confidence 479999999994 5566999999998 5778887532211 111111211 1236677777777
Q ss_pred cCCCcccccc
Q 001014 717 ERPEGIIVQF 726 (1190)
Q Consensus 717 ~~~d~Vi~~~ 726 (1190)
.+|+.=+..+
T Consensus 68 ~np~~~v~~~ 77 (135)
T PF00899_consen 68 INPDVEVEAI 77 (135)
T ss_dssp HSTTSEEEEE
T ss_pred hcCceeeeee
Confidence 7766544333
No 292
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.06 E-value=2.4 Score=37.84 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=29.6
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
||+|+|||.. +..++..++++|.++.++...+.-
T Consensus 1 ~vvViGgG~i-----------g~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFI-----------GIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHH-----------HHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHH-----------HHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999995 777799999999999999887654
No 293
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.99 E-value=11 Score=43.70 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEEECC-------CCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTYITP-------MTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~i~p-------~~~~~v~~i 162 (1190)
..++|+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+....+... ...+...+.
T Consensus 23 ~~~~VlIiG~Ggl-----------Gs~va~~La~aGvg~i~lvD~D~ve~s---NL~RQ~l~~~~d~~~g~~Ka~aa~~~ 88 (338)
T PRK12475 23 REKHVLIVGAGAL-----------GAANAEALVRAGIGKLTIADRDYVEWS---NLQRQQLYTEEDAKQKKPKAIAAKEH 88 (338)
T ss_pred cCCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEcCCccccc---ccCccccccHHHccCCccHHHHHHHH
Confidence 3468999999976 7889999999998 7778887653221 1111222111 122445556
Q ss_pred HHHcCCCEEEecCCCh-hHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 163 LEKERPDALLPTMGGQ-TALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~-~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
+++.+++.-+-..... +..+. ..+++.+.+-+.+.+.. ..+....+++.++|+|..-
T Consensus 89 l~~inp~v~i~~~~~~~~~~~~------~~~~~~~DlVid~~D~~-----~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 89 LRKINSEVEIVPVVTDVTVEEL------EELVKEVDLIIDATDNF-----DTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred HHHHCCCcEEEEEeccCCHHHH------HHHhcCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEEE
Confidence 6666676655333221 11111 22455566666654432 2345566788888887543
No 294
>CHL00194 ycf39 Ycf39; Provisional
Probab=80.84 E-value=7.3 Score=44.85 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
||+|+|+.+. +|+ ++++.|.+.|++|+++..++........ -.+-...+-.+.+.+.+.++ ++|.|+
T Consensus 2 kIlVtGatG~-iG~---------~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi 69 (317)
T CHL00194 2 SLLVIGATGT-LGR---------QIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAII 69 (317)
T ss_pred EEEEECCCcH-HHH---------HHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEE
Confidence 7999998664 544 5599999999999999876533211000 01111112234556666554 577776
Q ss_pred cc
Q 001014 724 VQ 725 (1190)
Q Consensus 724 ~~ 725 (1190)
-.
T Consensus 70 ~~ 71 (317)
T CHL00194 70 DA 71 (317)
T ss_pred EC
Confidence 43
No 295
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.63 E-value=7.6 Score=38.91 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=39.4
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccCCcceeecC-----CcHHHHHHHhhhcC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDTSDRLYFEP-----LTVEDVLNVIDLER 718 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~ad~~~~~p-----~~~e~v~~i~~~~~ 718 (1190)
||+|+|.|.. +..+++.|.+.|+ ++.++|.+.-+.+. +....++.+ ...+.+.+.+++.+
T Consensus 1 ~VliiG~Ggl-----------Gs~ia~~L~~~Gv~~i~ivD~d~v~~~n---l~r~~~~~~~~vG~~Ka~~~~~~l~~~~ 66 (143)
T cd01483 1 RVLLVGLGGL-----------GSEIALNLARSGVGKITLIDFDTVELSN---LNRQFLARQADIGKPKAEVAARRLNELN 66 (143)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEcCCCcCcch---hhccccCChhHCCChHHHHHHHHHHHHC
Confidence 5899999984 5566999999999 57788876433221 222222211 22555666666666
Q ss_pred CCccc
Q 001014 719 PEGII 723 (1190)
Q Consensus 719 ~d~Vi 723 (1190)
|+.-+
T Consensus 67 p~v~i 71 (143)
T cd01483 67 PGVNV 71 (143)
T ss_pred CCcEE
Confidence 55433
No 296
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=80.33 E-value=8.9 Score=42.13 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
..+++||+|++.. -|..+++.|.+.|++|++++.++... ..........+-.+.+.+.+++++
T Consensus 7 ~~k~vlItGas~~----------iG~~la~~l~~~G~~v~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK08220 7 SGKTVWVTGAAQG----------IGYAVALAFVEAGAKVIGFDQAFLTQ--EDYPFATFVLDVSDAAAVAQVCQRLLAET 74 (252)
T ss_pred CCCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEecchhhh--cCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4579999998742 37899999999999999998765110 011111112333456666665543
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|.++...+
T Consensus 75 ~~id~vi~~ag 85 (252)
T PRK08220 75 GPLDVLVNAAG 85 (252)
T ss_pred CCCCEEEECCC
Confidence 35899886654
No 297
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.19 E-value=7.4 Score=38.98 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=60.8
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEEE-----CCCCHHHHHHHHHHcC
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTYI-----TPMTPELVEQVLEKER 167 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~i-----~p~~~~~v~~i~~~~~ 167 (1190)
||+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+..+.+. .....+.+.+.+++..
T Consensus 1 ~VliiG~Ggl-----------Gs~ia~~L~~~Gv~~i~ivD~d~v~~~---nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~ 66 (143)
T cd01483 1 RVLLVGLGGL-----------GSEIALNLARSGVGKITLIDFDTVELS---NLNRQFLARQADIGKPKAEVAARRLNELN 66 (143)
T ss_pred CEEEECCCHH-----------HHHHHHHHHHCCCCEEEEEcCCCcCcc---hhhccccCChhHCCChHHHHHHHHHHHHC
Confidence 5999999965 7789999999999 6888887654322 22222222 2223455666666666
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp 229 (1190)
|+.-+-.......... ....+..+.+-+...+. ...+....+.++++|+|..
T Consensus 67 p~v~i~~~~~~~~~~~-----~~~~~~~~diVi~~~d~-----~~~~~~l~~~~~~~~i~~i 118 (143)
T cd01483 67 PGVNVTAVPEGISEDN-----LDDFLDGVDLVIDAIDN-----IAVRRALNRACKELGIPVI 118 (143)
T ss_pred CCcEEEEEeeecChhh-----HHHHhcCCCEEEECCCC-----HHHHHHHHHHHHHcCCCEE
Confidence 6654433321111100 02234445555544333 2234455566677766643
No 298
>PLN00016 RNA-binding protein; Provisional
Probab=80.18 E-value=5.7 Score=47.00 Aligned_cols=89 Identities=21% Similarity=0.132 Sum_probs=51.6
Q ss_pred CCCcEEEEE----CCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc----c----cC-CcceeecCCcH
Q 001014 641 TQKKKVLIL----GGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD----Y----DT-SDRLYFEPLTV 707 (1190)
Q Consensus 641 ~~~~kVlIl----G~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~----~----~~-ad~~~~~p~~~ 707 (1190)
...++|||+ |+.+. ||+ ++++.|.+.|++|++++.++...... + ++ ....-+...++
T Consensus 50 ~~~~~VLVt~~~~GatG~-iG~---------~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~ 119 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAF-IGF---------YLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDP 119 (378)
T ss_pred cccceEEEEeccCCCcee-EhH---------HHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecH
Confidence 355789999 87553 555 55999999999999998775431100 0 00 00111122345
Q ss_pred HHHHHHhhhcCCCccccccCCc--hhhhhhhhHH
Q 001014 708 EDVLNVIDLERPEGIIVQFGGQ--TPLKLSLPIH 739 (1190)
Q Consensus 708 e~v~~i~~~~~~d~Vi~~~g~~--~~~~la~~l~ 739 (1190)
.++.+++...++|.|+-..+.. ....+.+.+.
T Consensus 120 ~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~ 153 (378)
T PLN00016 120 ADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAK 153 (378)
T ss_pred HHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHH
Confidence 5555566556789888655433 1234555555
No 299
>PRK06523 short chain dehydrogenase; Provisional
Probab=79.90 E-value=9.8 Score=42.10 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
..++|||+|+... | |..+++.|.+.|++|++++.++.... .........+-.+.+.+.+++++
T Consensus 8 ~~k~vlItGas~g-I---------G~~ia~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 8 AGKRALVTGGTKG-I---------GAATVARLLEAGARVVTTARSRPDDL--PEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCEEEEECCCCc-h---------hHHHHHHHHHCCCEEEEEeCChhhhc--CCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3579999997642 2 78899999999999999987643211 11111112333455655544432
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+++-..+
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK06523 76 GGVDILVHVLG 86 (260)
T ss_pred CCCCEEEECCc
Confidence 26898886554
No 300
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.62 E-value=2.9 Score=43.60 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=49.1
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEec
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPT 174 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~ 174 (1190)
|+|+|+.. +.|..+++.|.+.|++|+++..++..... ..-.+....+..+.+.+.+.++ ++|+|+..
T Consensus 1 I~V~GatG----------~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATG----------FVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALK--GADAVIHA 67 (183)
T ss_dssp EEEETTTS----------HHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHT--TSSEEEEC
T ss_pred eEEECCCC----------hHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhh--hcchhhhh
Confidence 78999732 44899999999999999999887663321 1112222244557778888777 89999977
Q ss_pred CC
Q 001014 175 MG 176 (1190)
Q Consensus 175 ~~ 176 (1190)
.+
T Consensus 68 ~~ 69 (183)
T PF13460_consen 68 AG 69 (183)
T ss_dssp CH
T ss_pred hh
Confidence 75
No 301
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.47 E-value=9 Score=41.01 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEE-----ECCCCHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTY-----ITPMTPELVEQVLE 164 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~-----i~p~~~~~v~~i~~ 164 (1190)
...+|+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+....+ +...-.+.+.+.++
T Consensus 20 ~~~~VlviG~Ggl-----------Gs~ia~~La~~Gv~~i~lvD~d~ve~s---NL~Rq~l~~~~diG~~Ka~~~~~~l~ 85 (202)
T TIGR02356 20 LNSHVLIIGAGGL-----------GSPAALYLAGAGVGTIVIVDDDHVDLS---NLQRQILFTEEDVGRPKVEVAAQRLR 85 (202)
T ss_pred cCCCEEEECCCHH-----------HHHHHHHHHHcCCCeEEEecCCEEccc---chhhhhccChhhCCChHHHHHHHHHH
Confidence 4569999999976 7789999999998 7888886643221 1111111 22223345566666
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS 231 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~ 231 (1190)
+.+++.-+-......... .+ .+.+..+.+-+...+.. ..+....+.+.++++|..-.
T Consensus 86 ~~np~v~i~~~~~~i~~~---~~--~~~~~~~D~Vi~~~d~~-----~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 86 ELNSDIQVTALKERVTAE---NL--ELLINNVDLVLDCTDNF-----ATRYLINDACVALGTPLISA 142 (202)
T ss_pred HhCCCCEEEEehhcCCHH---HH--HHHHhCCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence 666765543332211111 01 22445555555443322 34556677888888875443
No 302
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=79.40 E-value=1.7 Score=49.40 Aligned_cols=134 Identities=20% Similarity=0.295 Sum_probs=69.9
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIV 724 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~ 724 (1190)
||||+|+.+. +|+.+ .+.+++.|++++.++.. ..+ -.+.+.+.++.+..+||.||-
T Consensus 2 riLI~GasG~-lG~~l---------~~~l~~~~~~v~~~~r~------~~d--------l~d~~~~~~~~~~~~pd~Vin 57 (286)
T PF04321_consen 2 RILITGASGF-LGSAL---------ARALKERGYEVIATSRS------DLD--------LTDPEAVAKLLEAFKPDVVIN 57 (286)
T ss_dssp EEEEETTTSH-HHHHH---------HHHHTTTSEEEEEESTT------CS---------TTSHHHHHHHHHHH--SEEEE
T ss_pred EEEEECCCCH-HHHHH---------HHHHhhCCCEEEEeCch------hcC--------CCCHHHHHHHHHHhCCCeEec
Confidence 7999997554 66655 89999999999988544 222 234788889999999999886
Q ss_pred ccCCch------------------hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 725 QFGGQT------------------PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 725 ~~g~~~------------------~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
+-+... +..+++.+. +.| ++++-.|.+.+---... .-..+...+.
T Consensus 58 ~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~----------~~~---~~li~~STd~VFdG~~~----~~y~E~d~~~ 120 (286)
T PF04321_consen 58 CAAYTNVDACEKNPEEAYAINVDATKNLAEACK----------ERG---ARLIHISTDYVFDGDKG----GPYTEDDPPN 120 (286)
T ss_dssp ------HHHHHHSHHHHHHHHTHHHHHHHHHHH----------HCT----EEEEEEEGGGS-SSTS----SSB-TTS---
T ss_pred cceeecHHhhhhChhhhHHHhhHHHHHHHHHHH----------HcC---CcEEEeeccEEEcCCcc----cccccCCCCC
Confidence 543210 113444444 667 66665555543211100 0022333444
Q ss_pred CCceeecCHHHHHHHHHH-hCCcEEEecCcCCCC
Q 001014 787 PKGGIAKSEADALAIAKE-IGYPVVVRPSYVLGG 819 (1190)
Q Consensus 787 p~~~~~~s~~e~~~~~~~-igyPvvvKP~~~~gg 819 (1190)
|-...-.+.-+..+++.+ ..-=+|++++...|.
T Consensus 121 P~~~YG~~K~~~E~~v~~~~~~~~IlR~~~~~g~ 154 (286)
T PF04321_consen 121 PLNVYGRSKLEGEQAVRAACPNALILRTSWVYGP 154 (286)
T ss_dssp -SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEecceeccc
Confidence 544433444444444443 222389999876665
No 303
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=79.34 E-value=6.3 Score=45.99 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC---ccCcce--EE-ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD---PGLADR--TY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~---~~~ad~--~~-i~p~~~~~v~~i~~~ 165 (1190)
.|+|||+|+.. +-|..+++.|.+.|++|++++.++...... ....+. .+ .+-.+.+.+.++++.
T Consensus 4 ~k~ilItGatG----------~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 4 GKKVLVTGHTG----------FKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCEEEEECCCC----------hhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhh
Confidence 36899999753 338899999999999999987654321100 000111 12 233467788888888
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|.|+-..+
T Consensus 74 ~~~d~vih~A~ 84 (349)
T TIGR02622 74 FKPEIVFHLAA 84 (349)
T ss_pred cCCCEEEECCc
Confidence 78999886554
No 304
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.28 E-value=8.2 Score=41.32 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=29.1
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCC
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSN 686 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~ 686 (1190)
.-.++||+|+|.|.. +..+++.|.++|+ ++.++|.+
T Consensus 18 kl~~~~VlviG~Ggl-----------Gs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGL-----------GSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHH-----------HHHHHHHHHHcCCCeEEEecCC
Confidence 456789999999994 5566999999998 67777776
No 305
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=79.26 E-value=4.6 Score=45.21 Aligned_cols=57 Identities=33% Similarity=0.532 Sum_probs=42.8
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEe
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip 173 (1190)
+|||+|++.-. |..+++.|. .+++|+.++... ++-.+++.+.+++++.+||+|+.
T Consensus 2 ~iLi~G~~GqL----------G~~L~~~l~-~~~~v~a~~~~~--------------~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 2 KILITGANGQL----------GTELRRALP-GEFEVIATDRAE--------------LDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred cEEEEcCCChH----------HHHHHHHhC-CCceEEeccCcc--------------ccccChHHHHHHHHhhCCCEEEE
Confidence 49999987421 677888887 678999886433 22236788999999999999996
Q ss_pred cC
Q 001014 174 TM 175 (1190)
Q Consensus 174 ~~ 175 (1190)
+.
T Consensus 57 ~A 58 (281)
T COG1091 57 AA 58 (281)
T ss_pred Cc
Confidence 54
No 306
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=79.02 E-value=5 Score=45.77 Aligned_cols=62 Identities=24% Similarity=0.331 Sum_probs=43.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|||||+|+.. +-|..+++.|.+.| +|+.++..... ...+-.+.+.+.++++..++|+|+
T Consensus 1 m~iLVtG~~G----------fiGs~l~~~L~~~g-~V~~~~~~~~~----------~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTG----------QVGWELQRALAPLG-NLIALDVHSTD----------YCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCC----------HHHHHHHHHhhccC-CEEEecccccc----------ccCCCCCHHHHHHHHHhcCCCEEE
Confidence 3799999832 23889999999999 78777643211 011223667788888888899998
Q ss_pred ecC
Q 001014 173 PTM 175 (1190)
Q Consensus 173 p~~ 175 (1190)
-+.
T Consensus 60 h~A 62 (299)
T PRK09987 60 NAA 62 (299)
T ss_pred ECC
Confidence 543
No 307
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=79.02 E-value=7.5 Score=45.79 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..++|+|.|++. ..|+.+++.|++.|+.|.++-.+.
T Consensus 78 ~~~~VlVvGatG----------~vG~~iv~~llkrgf~vra~VRd~ 113 (411)
T KOG1203|consen 78 KPTTVLVVGATG----------KVGRRIVKILLKRGFSVRALVRDE 113 (411)
T ss_pred CCCeEEEecCCC----------chhHHHHHHHHHCCCeeeeeccCh
Confidence 346999999985 448999999999999999886654
No 308
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=78.97 E-value=8.6 Score=45.07 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=58.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC-cceEEE--CCC----CH-------
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL-ADRTYI--TPM----TP------- 156 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~-ad~~~i--~p~----~~------- 156 (1190)
|+||+|.|||- .=|=|-+..+++.|++.|++|.++..+...-... +.. .+...+ .++ ..
T Consensus 1 ~~~i~~~~GGT------GGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 74 (352)
T PRK12446 1 MKKIVFTGGGS------AGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPF 74 (352)
T ss_pred CCeEEEEcCCc------HHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHH
Confidence 46899999983 2233778999999999999999997554321111 111 111112 122 11
Q ss_pred ------HHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeC
Q 001014 157 ------ELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIG 202 (1190)
Q Consensus 157 ------~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G 202 (1190)
-...+++++.+||+|+ ++||........ .....++|++-
T Consensus 75 ~~~~~~~~~~~i~~~~kPdvvi-~~Ggy~s~p~~~------aa~~~~~p~~i 119 (352)
T PRK12446 75 LVMKGVMDAYVRIRKLKPDVIF-SKGGFVSVPVVI------GGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCEEE-ecCchhhHHHHH------HHHHcCCCEEE
Confidence 0234567889999998 577766555443 12335677663
No 309
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.66 E-value=9.3 Score=44.41 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNP 687 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p 687 (1190)
-..++|+|+|.|.. +..+++.|.++|+ ++.++|.+.
T Consensus 22 L~~~~VlIiG~Ggl-----------Gs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGAL-----------GAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEcCCc
Confidence 45679999999994 5566999999998 677788764
No 310
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=78.48 E-value=9.5 Score=42.24 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=44.4
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEE--ecCCCCCcCccccCCcceeecCC-cHHHHHHHhhhcCCC
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIM--MNSNPETVSTDYDTSDRLYFEPL-TVEDVLNVIDLERPE 720 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~--v~~~p~~~s~~~~~ad~~~~~p~-~~e~v~~i~~~~~~d 720 (1190)
++|||+||=.. +..++..|.+.|+ +++ +.+...................+ +.+.+.+++++++++
T Consensus 1 m~ILvlgGTtE-----------~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~ 68 (249)
T PF02571_consen 1 MKILVLGGTTE-----------GRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGID 68 (249)
T ss_pred CEEEEEechHH-----------HHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCc
Confidence 48999997553 7888999999998 432 22211111111111223455667 899999999999998
Q ss_pred ccc
Q 001014 721 GII 723 (1190)
Q Consensus 721 ~Vi 723 (1190)
.||
T Consensus 69 ~vI 71 (249)
T PF02571_consen 69 AVI 71 (249)
T ss_pred EEE
Confidence 887
No 311
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.22 E-value=4.9 Score=48.09 Aligned_cols=36 Identities=39% Similarity=0.560 Sum_probs=32.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPAT 138 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~ 138 (1190)
++||+|+|-| -||+.+++.|++.|++|++.|.+++.
T Consensus 7 ~~kv~V~GLG-----------~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLG-----------KSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecc-----------cccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 6799999998 45899999999999999999988775
No 312
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=78.21 E-value=16 Score=36.12 Aligned_cols=33 Identities=30% Similarity=0.732 Sum_probs=27.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~ 136 (1190)
+||+|+|.|.+ |..+++.|.+.|+ ++.++|.+.
T Consensus 3 ~~v~iiG~G~v-----------Gs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGV-----------GSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHH-----------HHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHH-----------HHHHHHHHHHhCCCceeecCCcc
Confidence 59999999976 7889999999999 677888654
No 313
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=78.17 E-value=11 Score=43.67 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC--CCCccC--------cc-eEE-ECCCCHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI--MTDPGL--------AD-RTY-ITPMTPEL 158 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~--~~~~~~--------ad-~~~-i~p~~~~~ 158 (1190)
..++|||+|+.. +-|..+++.|.+.|++|++++..+... ...... .. ..+ .+-.+.+.
T Consensus 5 ~~~~vlVTGatG----------fiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 74 (340)
T PLN02653 5 PRKVALITGITG----------QDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASS 74 (340)
T ss_pred CCCEEEEECCCC----------ccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHH
Confidence 356899999853 238899999999999999986543210 000000 01 122 23346777
Q ss_pred HHHHHHHcCCCEEEecC
Q 001014 159 VEQVLEKERPDALLPTM 175 (1190)
Q Consensus 159 v~~i~~~~~~d~Vip~~ 175 (1190)
+.++++..++|.|+-.-
T Consensus 75 ~~~~~~~~~~d~Vih~A 91 (340)
T PLN02653 75 LRRWLDDIKPDEVYNLA 91 (340)
T ss_pred HHHHHHHcCCCEEEECC
Confidence 88888877899888544
No 314
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.84 E-value=14 Score=39.61 Aligned_cols=116 Identities=19% Similarity=0.323 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..++|+|+|.|.. |..+++.|.+.|++|+++|.++.............++. .+. +.. .++|+
T Consensus 27 ~gk~v~I~G~G~v-----------G~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~---~~~---l~~-~~~Dv 88 (200)
T cd01075 27 EGKTVAVQGLGKV-----------GYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVA---PEE---IYS-VDADV 88 (200)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc---chh---hcc-ccCCE
Confidence 4579999999954 78899999999999998887654211100000111221 222 222 26999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGN 235 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~ 235 (1190)
++|+.-+.. +. ...+++.+.+++.-... ..+.| ..-.+.|++.||...|-...+
T Consensus 89 ~vp~A~~~~-------I~-~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~Pd~~~N 142 (200)
T cd01075 89 FAPCALGGV-------IN-DDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAPDYVVN 142 (200)
T ss_pred EEecccccc-------cC-HHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeCceeee
Confidence 997643210 11 12344455555421111 11111 334568899999986644443
No 315
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.83 E-value=30 Score=38.33 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=82.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d~V 171 (1190)
++|||+|+-.. -|..+++.|.+.|++|.++..++........-.+ ..... .+...+...++ +.|.+
T Consensus 1 ~~ilV~GatG~----------~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~~~v~-~~~~d~~~~~~l~~a~~--G~~~~ 67 (275)
T COG0702 1 MKILVTGATGF----------VGGAVVRELLARGHEVRAAVRNPEAAAALAGGVE-VVLGDLRDPKSLVAGAK--GVDGV 67 (275)
T ss_pred CeEEEEecccc----------hHHHHHHHHHhCCCEEEEEEeCHHHHHhhcCCcE-EEEeccCCHhHHHHHhc--cccEE
Confidence 37999998753 3889999999999999999988764432221111 22222 24455555554 66665
Q ss_pred EecCCCh--------hHHHHHHHHHHhhH-HHHcCCc--EeCCcH-HHHHHHhcHHHHHHHHHHcCCCC----CCeeecC
Q 001014 172 LPTMGGQ--------TALNLAVALAESGA-LEKYGVE--LIGAKL-DAIKKAEDRDLFKQAMKTIGVKT----PPSGIGN 235 (1190)
Q Consensus 172 ip~~~g~--------~~~~~~~~l~~~~~-le~~gi~--~~G~~~-~~i~~~~DK~~~k~~l~~~Gipv----p~~~~v~ 235 (1190)
+...... ..........++.- .....+. .++... .......+|...-+.+.+.|++. |+++...
T Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~t~lr~~~~~~~ 147 (275)
T COG0702 68 LLISGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPYTTLRRAAFYLG 147 (275)
T ss_pred EEEecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCeEEEecCeeeec
Confidence 5433311 11111111111100 0011111 334332 44677888999999999999993 4555554
Q ss_pred CHHHHHHHHHHcCCCcEEEecC
Q 001014 236 TLDECISIANEIGEFPLIIRPA 257 (1190)
Q Consensus 236 s~~e~~~~~~~ig~~PvVVKP~ 257 (1190)
...........-+ .|++..+.
T Consensus 148 ~~~~~~~~~~~~~-~~~~~~~~ 168 (275)
T COG0702 148 AGAAFIEAAEAAG-LPVIPRGI 168 (275)
T ss_pred cchhHHHHHHhhC-CceecCCC
Confidence 4433333344445 56655554
No 316
>PRK07856 short chain dehydrogenase; Provisional
Probab=77.73 E-value=10 Score=41.71 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
..|+++|+|++.. -|+.+++.|.+.|++|++++.++.... ...-......+..+.+.+.++++.
T Consensus 5 ~~k~~lItGas~g----------IG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 73 (252)
T PRK07856 5 TGRVVLVTGGTRG----------IGAGIARAFLAAGATVVVCGRRAPETV-DGRPAEFHAADVRDPDQVAALVDAIVERH 73 (252)
T ss_pred CCCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCChhhhh-cCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3479999998743 278899999999999999987653211 011111112333455555555543
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 74 ~~id~vi~~ag 84 (252)
T PRK07856 74 GRLDVLVNNAG 84 (252)
T ss_pred CCCCEEEECCC
Confidence 36899987654
No 317
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=77.31 E-value=6.9 Score=42.68 Aligned_cols=120 Identities=20% Similarity=0.279 Sum_probs=72.8
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC--ccCcceEEECCC-CHHHHHHHHHHcCCCEE
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD--PGLADRTYITPM-TPELVEQVLEKERPDAL 171 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--~~~ad~~~i~p~-~~~~v~~i~~~~~~d~V 171 (1190)
|+|+|+-.. -|+.++++|.+.|++|.++..++...... ..........++ +.+.+.+.++ ++|.|
T Consensus 1 I~V~GatG~----------~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v 68 (233)
T PF05368_consen 1 ILVTGATGN----------QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAV 68 (233)
T ss_dssp EEEETTTSH----------HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEE
T ss_pred CEEECCccH----------HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc--CCceE
Confidence 789997422 28899999999999999998776321100 001112333333 5677777776 89999
Q ss_pred EecCCCh--hHHHHHHHHHHhhHHHHcCCcEeC-----CcH-------HHHHHHhcHHHHHHHHHHcCCCC
Q 001014 172 LPTMGGQ--TALNLAVALAESGALEKYGVELIG-----AKL-------DAIKKAEDRDLFKQAMKTIGVKT 228 (1190)
Q Consensus 172 ip~~~g~--~~~~~~~~l~~~~~le~~gi~~~G-----~~~-------~~i~~~~DK~~~k~~l~~~Gipv 228 (1190)
+...+.. ........+. +++.+.|++.+- ... ........|....+.+++.|++.
T Consensus 69 ~~~~~~~~~~~~~~~~~li--~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 69 FSVTPPSHPSELEQQKNLI--DAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp EEESSCSCCCHHHHHHHHH--HHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred EeecCcchhhhhhhhhhHH--HhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 8777643 2233333332 345566776542 111 13556678889999999997775
No 318
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=76.79 E-value=25 Score=38.12 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc-EEEecCCCCCCc-----------ceEEeCCHHHHHHHHHHHH
Q 001014 215 DLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP-LIIRPAFTLGGT-----------GGGIAYNKEEFEAICKAGL 282 (1190)
Q Consensus 215 ~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P-vVVKP~~g~gg~-----------Gv~iv~~~~el~~~~~~~~ 282 (1190)
+..+++|+++|+.+-++.+.++..++.+.+..++ -| .|+|..-..||+ ||.+-.+.+...++.+++.
T Consensus 25 fQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~-~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qMI 103 (412)
T KOG1447|consen 25 FQSKEILSKNGVRVQRFFVADNAKEALEAAKRFN-AKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQMI 103 (412)
T ss_pred hhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcC-CcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHHHH
Confidence 4567899999999999999999999988888887 54 899997655555 4567888898888888776
Q ss_pred hc------CC-----CCcEEEeeecCCCeeeeEEEEEeC
Q 001014 283 AA------SL-----TSQVLVEKSLLGWKEYELEVMRDL 310 (1190)
Q Consensus 283 ~~------~~-----~~~vlVEe~I~G~~E~sv~v~~d~ 310 (1190)
.. .+ -+.++|-|-+.=.+|--+.++.|+
T Consensus 104 G~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDR 142 (412)
T KOG1447|consen 104 GYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 142 (412)
T ss_pred hhhhhhccCCccceeeeeEEEeeccccchheeeeeeecc
Confidence 32 22 234666666655455555555543
No 319
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.55 E-value=4.3 Score=44.58 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC---cce-EE-ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL---ADR-TY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~---ad~-~~-i~p~~~~~v~~i~~~ 165 (1190)
.++|||+|+... -|..+++.|.+.|++|++++.++...... ... .+. .+ .+-.+.+.+.+++++
T Consensus 5 ~~~vlItGasg~----------iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 5 GKVAIVTGASSG----------IGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CcEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 469999998642 27899999999999999998776421100 000 111 22 333466666666554
Q ss_pred c-----CCCEEEecCC
Q 001014 166 E-----RPDALLPTMG 176 (1190)
Q Consensus 166 ~-----~~d~Vip~~~ 176 (1190)
. ++|+|+...+
T Consensus 75 ~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 75 ALERFGSVDILVNNAG 90 (251)
T ss_pred HHHHhCCCCEEEECCC
Confidence 2 6899987665
No 320
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.39 E-value=5.1 Score=43.04 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=31.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
...++|||+|||.. +..-++.|.+.|.++.++++++.
T Consensus 7 l~gk~vlVvGgG~v-----------a~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 7 LEGRAVLVVGGGDV-----------ALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred cCCCeEEEECcCHH-----------HHHHHHHHHHCCCEEEEEcCCCC
Confidence 35689999999984 67778999999999999987653
No 321
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=76.37 E-value=15 Score=40.71 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----c
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK-----E 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~-----~ 166 (1190)
.|+++|+|++.. | |..+++.|.+.|++|++++.++.... .........+..+.+.+.++++. .
T Consensus 9 ~k~vlItG~s~g-I---------G~~la~~l~~~G~~v~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 9 GKIIIVTGGSSG-I---------GLAIVKELLANGANVVNADIHGGDGQ--HENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred CCEEEEeCCCCh-H---------HHHHHHHHHHCCCEEEEEeCCccccc--cCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468999997642 2 78899999999999999987654322 11111122344466666665553 3
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 77 ~id~li~~Ag 86 (266)
T PRK06171 77 RIDGLVNNAG 86 (266)
T ss_pred CCCEEEECCc
Confidence 6898886554
No 322
>PRK05865 hypothetical protein; Provisional
Probab=76.02 E-value=28 Score=45.48 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=44.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|||||+|+.. +-|..+++.|.+.|++|++++.+..... ..-......+-.+.+.+.+.++ ++|.|+
T Consensus 1 MkILVTGATG----------fIGs~La~~Ll~~G~~Vv~l~R~~~~~~--~~~v~~v~gDL~D~~~l~~al~--~vD~VV 66 (854)
T PRK05865 1 MRIAVTGASG----------VLGRGLTARLLSQGHEVVGIARHRPDSW--PSSADFIAADIRDATAVESAMT--GADVVA 66 (854)
T ss_pred CEEEEECCCC----------HHHHHHHHHHHHCcCEEEEEECCchhhc--ccCceEEEeeCCCHHHHHHHHh--CCCEEE
Confidence 3799999743 3388999999999999999976532111 0111111223345667777665 689888
Q ss_pred ecC
Q 001014 173 PTM 175 (1190)
Q Consensus 173 p~~ 175 (1190)
-..
T Consensus 67 HlA 69 (854)
T PRK05865 67 HCA 69 (854)
T ss_pred ECC
Confidence 654
No 323
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=75.63 E-value=9.1 Score=44.59 Aligned_cols=34 Identities=32% Similarity=0.643 Sum_probs=30.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
..|+|||+||- |.+++..+.+.|++|.+++.++.
T Consensus 4 ~dviIIGgGpA-----------GlMaA~~aa~~G~~V~lid~~~k 37 (408)
T COG2081 4 FDVIIIGGGPA-----------GLMAAISAAKAGRRVLLIDKGPK 37 (408)
T ss_pred ceEEEECCCHH-----------HHHHHHHHhhcCCEEEEEecCcc
Confidence 57999999973 88999999999999999998764
No 324
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=75.60 E-value=9.7 Score=45.00 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=28.9
Q ss_pred CCcEEEEEC-CCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 642 QKKKVLILG-GGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG-~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
..++|.|+| .|. +|.++ ++++++.|++|.+++.++
T Consensus 97 ~~~~I~IiGG~Gl--mG~sl---------A~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQ--LGRLF---------AKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCCh--hhHHH---------HHHHHHCCCeEEEeCCCc
Confidence 457899999 566 77766 999999999999998653
No 325
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=75.33 E-value=5.2 Score=48.53 Aligned_cols=33 Identities=30% Similarity=0.607 Sum_probs=28.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..|+|+|+||- |..++..|.+.|++|++++..+
T Consensus 40 ~DViIVGaGPA-----------G~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPA-----------GACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHH-----------HHHHHHHHHhCCCcEEEEecCC
Confidence 48999999974 7888999999999999998653
No 326
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=75.31 E-value=8.8 Score=39.78 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..++|||+|+|.. .|..+++.|.+.|.+|.+++.+. +.+.+.++ +.|+
T Consensus 43 ~gk~vlViG~G~~----------~G~~~a~~L~~~g~~V~v~~r~~--------------------~~l~~~l~--~aDi 90 (168)
T cd01080 43 AGKKVVVVGRSNI----------VGKPLAALLLNRNATVTVCHSKT--------------------KNLKEHTK--QADI 90 (168)
T ss_pred CCCEEEEECCcHH----------HHHHHHHHHhhCCCEEEEEECCc--------------------hhHHHHHh--hCCE
Confidence 4679999999953 36779999999999988887431 23444444 5788
Q ss_pred EEecCCC
Q 001014 171 LLPTMGG 177 (1190)
Q Consensus 171 Vip~~~g 177 (1190)
|+.+.+.
T Consensus 91 VIsat~~ 97 (168)
T cd01080 91 VIVAVGK 97 (168)
T ss_pred EEEcCCC
Confidence 8877764
No 327
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=75.04 E-value=10 Score=44.08 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=47.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC--CCccC---------cc-eEEE-CCCCHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM--TDPGL---------AD-RTYI-TPMTPELV 159 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~--~~~~~---------ad-~~~i-~p~~~~~v 159 (1190)
|+|||+|+.. +-|..+++.|.+.|++|++++.++.... ..... .. ..+. +-.+.+.+
T Consensus 1 ~~vlVTGatG----------fIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l 70 (343)
T TIGR01472 1 KIALITGITG----------QDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNL 70 (343)
T ss_pred CeEEEEcCCC----------cHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHH
Confidence 5899999854 3389999999999999999976543110 00000 00 1222 22366788
Q ss_pred HHHHHHcCCCEEEecC
Q 001014 160 EQVLEKERPDALLPTM 175 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~ 175 (1190)
.++++..++|.|+-.-
T Consensus 71 ~~~~~~~~~d~ViH~A 86 (343)
T TIGR01472 71 RRIIDEIKPTEIYNLA 86 (343)
T ss_pred HHHHHhCCCCEEEECC
Confidence 8888887899988543
No 328
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.02 E-value=12 Score=43.65 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEEECC-------CCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTYITP-------MTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~i~p-------~~~~~v~~i 162 (1190)
...+|+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+....+... ...+...+.
T Consensus 23 ~~~~VlVvG~Ggl-----------Gs~va~~La~aGvg~i~lvD~D~Ve~s---NL~RQ~l~~~~dig~g~~Ka~aa~~~ 88 (339)
T PRK07688 23 REKHVLIIGAGAL-----------GTANAEMLVRAGVGKVTIVDRDYVEWS---NLQRQQLYTESDVKNNLPKAVAAKKR 88 (339)
T ss_pred cCCcEEEECCCHH-----------HHHHHHHHHHcCCCeEEEEeCCccCHH---HcCccccccHHHhcCCCcHHHHHHHH
Confidence 3469999999976 7789999999999 8888887643221 1111222211 122344455
Q ss_pred HHHcCCCEEEecCCChh-HHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC
Q 001014 163 LEKERPDALLPTMGGQT-ALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~-~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp 229 (1190)
+++.+++.-+-...... ..+. ..++..+.+-+...+.. ..+....+.+.++|+|..
T Consensus 89 l~~inp~v~v~~~~~~~~~~~~------~~~~~~~DlVid~~Dn~-----~~r~~ln~~~~~~~iP~i 145 (339)
T PRK07688 89 LEEINSDVRVEAIVQDVTAEEL------EELVTGVDLIIDATDNF-----ETRFIVNDAAQKYGIPWI 145 (339)
T ss_pred HHHHCCCcEEEEEeccCCHHHH------HHHHcCCCEEEEcCCCH-----HHHHHHHHHHHHhCCCEE
Confidence 66666765443333221 1111 12344555555544322 235566778888888754
No 329
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=75.01 E-value=15 Score=40.07 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=41.5
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccCCcceeecC-----CcHHHHHHH
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDTSDRLYFEP-----LTVEDVLNV 713 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~ad~~~~~p-----~~~e~v~~i 713 (1190)
.-.+.+|+|+|.|+. +..+++.|.+.|+. +.++|.+.-+.+. +.-..++.+ ...+.+.+.
T Consensus 18 ~L~~~~VlivG~Ggl-----------Gs~va~~La~~Gvg~i~lvD~D~ve~sN---L~Rq~l~~~~diG~~Ka~~~~~~ 83 (228)
T cd00757 18 KLKNARVLVVGAGGL-----------GSPAAEYLAAAGVGKLGLVDDDVVELSN---LQRQILHTEADVGQPKAEAAAER 83 (228)
T ss_pred HHhCCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEcCCEEcCcc---cccccccChhhCCChHHHHHHHH
Confidence 345789999999994 55669999999985 5566655322211 122222211 225566666
Q ss_pred hhhcCCCccc
Q 001014 714 IDLERPEGII 723 (1190)
Q Consensus 714 ~~~~~~d~Vi 723 (1190)
+++.+|+.-+
T Consensus 84 l~~~np~~~i 93 (228)
T cd00757 84 LRAINPDVEI 93 (228)
T ss_pred HHHhCCCCEE
Confidence 6666665433
No 330
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=74.92 E-value=9.3 Score=44.23 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=45.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccC--cc-eEE-ECCCCHHHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGL--AD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~--ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
+||||+|+.. +-|..+++.|.+.|++|++++......... ... .. ..+ .+..+.+.+.++++
T Consensus 1 m~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 70 (338)
T PRK10675 1 MRVLVTGGSG----------YIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILH 70 (338)
T ss_pred CeEEEECCCC----------hHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHh
Confidence 3799999742 338899999999999999986432111100 000 01 112 33346677777777
Q ss_pred HcCCCEEEecC
Q 001014 165 KERPDALLPTM 175 (1190)
Q Consensus 165 ~~~~d~Vip~~ 175 (1190)
..++|+|+-..
T Consensus 71 ~~~~d~vvh~a 81 (338)
T PRK10675 71 DHAIDTVIHFA 81 (338)
T ss_pred cCCCCEEEECC
Confidence 66899988544
No 331
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.80 E-value=16 Score=44.36 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhH---hhCCCCcEEEEEecCC
Q 001014 806 GYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAV---EVDPERPVLIDKYLSD 855 (1190)
Q Consensus 806 gyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~---~~~~~~~vliEefI~~ 855 (1190)
....|+||....-|+|+.++++.+++...+.... ....+..++++.||+.
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccC
Confidence 4678999999999999999999999887764311 1223567888888853
No 332
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=74.79 E-value=7.7 Score=43.66 Aligned_cols=59 Identities=34% Similarity=0.518 Sum_probs=44.0
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEe
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip 173 (1190)
||||+|+.. +-|..+++.|.+.|++|++++... .+-.+.+.+.+.++..++|.|+-
T Consensus 1 kilv~G~tG----------~iG~~l~~~l~~~g~~v~~~~r~~--------------~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANG----------QLGRELVQQLSPEGRVVVALTSSQ--------------LDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCC----------HHHHHHHHHHHhcCCEEEEeCCcc--------------cCCCCHHHHHHHHHhCCCCEEEE
Confidence 589999742 348999999999999999886531 11235677888888778999986
Q ss_pred cCC
Q 001014 174 TMG 176 (1190)
Q Consensus 174 ~~~ 176 (1190)
..+
T Consensus 57 ~a~ 59 (287)
T TIGR01214 57 TAA 59 (287)
T ss_pred CCc
Confidence 554
No 333
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.77 E-value=2.3 Score=46.76 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
..++|||+|+... ||+. +++.|.+.|++|++++.+++.
T Consensus 4 ~~~~vlItGasg~-iG~~---------l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 4 EGKVAIVTGASSG-IGEG---------IARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CCcEEEEECCCCh-HHHH---------HHHHHHHCCCEEEEEeCCHHH
Confidence 4579999998764 6554 489999999999999887643
No 334
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.37 E-value=7.3 Score=43.14 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCc-cccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 90 TDLRKILILGAGP-IVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 90 ~~~~kVLIiG~G~-~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
...|+++|+|++. --| |+.+++.|.+.|++|++++.+
T Consensus 5 l~~k~~lItGas~~~gI---------G~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSGKKIVVMGVANKRSI---------AWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCCCEEEEeCCCCCCch---------HHHHHHHHHHCCCEEEEecCc
Confidence 3457999999861 123 788999999999999998755
No 335
>PRK06398 aldose dehydrogenase; Validated
Probab=74.25 E-value=17 Score=40.32 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=45.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----c
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK-----E 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~-----~ 166 (1190)
.|+|||+|+..- -|..+++.|.+.|++|++++.+..... .......+-.+.+.+.+++++ .
T Consensus 6 gk~vlItGas~g----------IG~~ia~~l~~~G~~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~ 71 (258)
T PRK06398 6 DKVAIVTGGSQG----------IGKAVVNRLKEEGSNVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYG 71 (258)
T ss_pred CCEEEEECCCch----------HHHHHHHHHHHCCCeEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 479999998642 278999999999999999876543211 111112333455665555543 2
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 72 ~id~li~~Ag 81 (258)
T PRK06398 72 RIDILVNNAG 81 (258)
T ss_pred CCCEEEECCC
Confidence 6899886544
No 336
>PRK08264 short chain dehydrogenase; Validated
Probab=74.10 E-value=15 Score=40.03 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc-CCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE-RPD 169 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~-~~d 169 (1190)
.++|+|+|+... -|..+++.|.+.|+ +|++++.++........-......+-.+.+.+.++++.. .+|
T Consensus 6 ~~~vlItGgsg~----------iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 6 GKVVLVTGANRG----------IGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCEEEEECCCch----------HHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 468999997542 37899999999999 998888765432210001111123444667777777654 479
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
+|+-..+
T Consensus 76 ~vi~~ag 82 (238)
T PRK08264 76 ILVNNAG 82 (238)
T ss_pred EEEECCC
Confidence 9987665
No 337
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=74.08 E-value=7.5 Score=42.14 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
.++++|||+|||.. +..=++.|.+.|.++.++.+..
T Consensus 23 ~~~~~VLVVGGG~V-----------A~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 23 SNKIKVLIIGGGKA-----------AFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEEcCCC
Confidence 46789999999985 5566788889999999998753
No 338
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=73.89 E-value=19 Score=39.70 Aligned_cols=70 Identities=19% Similarity=0.353 Sum_probs=44.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCe-EEEEccCCCCCCCCccCcceEEEC-----CCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYE-VILINSNPATIMTDPGLADRTYIT-----PMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~i~-----p~~~~~v~~i~~~ 165 (1190)
..+|+|+|.|.+ |..+++.|.+.|+. ++++|.+.-... .+....+.. ....+...+.+++
T Consensus 24 ~~~VlvvG~Ggl-----------Gs~va~~La~~Gvg~i~lvD~D~ve~s---NL~RQ~l~~~~diG~~Ka~~a~~~l~~ 89 (240)
T TIGR02355 24 ASRVLIVGLGGL-----------GCAASQYLAAAGVGNLTLLDFDTVSLS---NLQRQVLHSDANIGQPKVESAKDALTQ 89 (240)
T ss_pred CCcEEEECcCHH-----------HHHHHHHHHHcCCCEEEEEeCCccccc---CcccceeeeHhhCCCcHHHHHHHHHHH
Confidence 469999999976 77899999999974 556665543322 222223322 1233456667777
Q ss_pred cCCCEEEecC
Q 001014 166 ERPDALLPTM 175 (1190)
Q Consensus 166 ~~~d~Vip~~ 175 (1190)
.+|+.-+-..
T Consensus 90 inp~v~i~~~ 99 (240)
T TIGR02355 90 INPHIAINPI 99 (240)
T ss_pred HCCCcEEEEE
Confidence 7777665444
No 339
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=73.86 E-value=21 Score=39.39 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEE-EecCCCCCcCccccCCcceeecC-----CcHHHHHHHh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETI-MMNSNPETVSTDYDTSDRLYFEP-----LTVEDVLNVI 714 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi-~v~~~p~~~s~~~~~ad~~~~~p-----~~~e~v~~i~ 714 (1190)
-...+|+|+|.|+. +..+++.|.+.|+.-+ ++|.+.-..+. +.-..++.+ ...+.+.+.+
T Consensus 22 L~~~~VlvvG~Ggl-----------Gs~va~~La~~Gvg~i~lvD~D~ve~sN---L~RQ~l~~~~diG~~Ka~~a~~~l 87 (240)
T TIGR02355 22 LKASRVLIVGLGGL-----------GCAASQYLAAAGVGNLTLLDFDTVSLSN---LQRQVLHSDANIGQPKVESAKDAL 87 (240)
T ss_pred HhCCcEEEECcCHH-----------HHHHHHHHHHcCCCEEEEEeCCcccccC---cccceeeeHhhCCCcHHHHHHHHH
Confidence 45679999999994 5566999999997654 55654322221 222222221 1245556666
Q ss_pred hhcCCCcccc
Q 001014 715 DLERPEGIIV 724 (1190)
Q Consensus 715 ~~~~~d~Vi~ 724 (1190)
++.+|+.-+.
T Consensus 88 ~~inp~v~i~ 97 (240)
T TIGR02355 88 TQINPHIAIN 97 (240)
T ss_pred HHHCCCcEEE
Confidence 6666665443
No 340
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.84 E-value=4.3 Score=47.44 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=44.7
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc---ccCCcce---eecCCcHHHHHHHhhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD---YDTSDRL---YFEPLTVEDVLNVIDL 716 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~---~~~ad~~---~~~p~~~e~v~~i~~~ 716 (1190)
.++|||+|+... ||+ ++++.|.+.|++|++++.++...... ....++. ..+-.+.+.+.++++.
T Consensus 4 ~k~ilItGatG~-IG~---------~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 4 GKKVLVTGHTGF-KGS---------WLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCEEEEECCCCh-hHH---------HHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhh
Confidence 478999998664 555 55999999999999988665432110 0001111 1122346677777776
Q ss_pred cCCCcccc
Q 001014 717 ERPEGIIV 724 (1190)
Q Consensus 717 ~~~d~Vi~ 724 (1190)
.++|.|+-
T Consensus 74 ~~~d~vih 81 (349)
T TIGR02622 74 FKPEIVFH 81 (349)
T ss_pred cCCCEEEE
Confidence 67777663
No 341
>PLN02740 Alcohol dehydrogenase-like
Probab=73.83 E-value=10 Score=44.81 Aligned_cols=177 Identities=12% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccCCcceeecCC-----cHHHHHHHh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDTSDRLYFEPL-----TVEDVLNVI 714 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~ad~~~~~p~-----~~e~v~~i~ 714 (1190)
...++|||+|+|+. +..+++.++.+|. +|++++.+++.......+....++.+. ..+.+.++.
T Consensus 197 ~~g~~VlV~G~G~v-----------G~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 197 QAGSSVAIFGLGAV-----------GLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMT 265 (381)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHh
Q ss_pred hhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC
Q 001014 715 DLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS 794 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s 794 (1190)
.. .+|.|+-..|+...+..+..+- ..|.+++.++|........-.+...+..-..=.|.-...+....+
T Consensus 266 ~~-g~dvvid~~G~~~~~~~a~~~~----------~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 334 (381)
T PLN02740 266 GG-GVDYSFECAGNVEVLREAFLST----------HDGWGLTVLLGIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQ 334 (381)
T ss_pred CC-CCCEEEECCCChHHHHHHHHhh----------hcCCCEEEEEccCCCCceecccHHHHhcCCeEEEEecCCCCcHHH
Q ss_pred HHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEE
Q 001014 795 EADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVL 848 (1190)
Q Consensus 795 ~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vl 848 (1190)
..++.++..+-.+++ +|. +.-+...+|+.++++.+.+....+.++
T Consensus 335 ~~~~~~~~~~g~i~~--~~~-------it~~~~l~e~~~A~~~~~~~~~~k~~~ 379 (381)
T PLN02740 335 LPNLAKQCMQGVVNL--DGF-------ITHELPFEKINEAFQLLEDGKALRCLL 379 (381)
T ss_pred HHHHHHHHHcCCCCh--HHh-------eeEEecHHHHHHHHHHHHCCCceeEEE
No 342
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.82 E-value=20 Score=43.62 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=49.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
.++|+|+|.| -||..+++.|++ |++|++.|.++..........+..+....+.+. + .++|.|
T Consensus 6 ~~~v~v~G~G-----------~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~d~v 67 (454)
T PRK01368 6 KQKIGVFGLG-----------KTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSR----W--QNLDKI 67 (454)
T ss_pred CCEEEEEeec-----------HHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhH----h--hCCCEE
Confidence 4699999999 469999999995 999999985433211000110112222222221 1 268988
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeC
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIG 202 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G 202 (1190)
+...+=... +- . -..+.+.|+++++
T Consensus 68 V~SPgI~~~-~p--~---~~~a~~~gi~v~~ 92 (454)
T PRK01368 68 VLSPGIPLT-HE--I---VKIAKNFNIPITS 92 (454)
T ss_pred EECCCCCCC-CH--H---HHHHHHCCCceec
Confidence 876652211 11 1 1124567899884
No 343
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=73.49 E-value=6.4 Score=43.57 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|+.+...+++||+|++.. -|..+++.|.+.|++|++++.++
T Consensus 2 ~~~~~~~k~vlVtGas~g----------IG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 2 MNQRFAGKVVVVTGAAQG----------IGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred cccccCCCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCch
Confidence 344445679999998753 27899999999999999997653
No 344
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=73.36 E-value=9.3 Score=39.31 Aligned_cols=35 Identities=31% Similarity=0.654 Sum_probs=27.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
|+||.+||-|.. |..+++.|.+.|++|.++|.++.
T Consensus 1 m~~Ig~IGlG~m-----------G~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 1 MMKIGFIGLGNM-----------GSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp -BEEEEE--SHH-----------HHHHHHHHHHTTTEEEEEESSHH
T ss_pred CCEEEEEchHHH-----------HHHHHHHHHhcCCeEEeeccchh
Confidence 369999999964 88999999999999999986653
No 345
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=73.27 E-value=14 Score=40.81 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSN 686 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~ 686 (1190)
-.++||+|+|.|+. +..+++.|.+.|+. ..++|.+
T Consensus 30 L~~~~VliiG~Ggl-----------Gs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGL-----------GCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEcCC
Confidence 46689999999994 55669999999984 5566665
No 346
>PRK05693 short chain dehydrogenase; Provisional
Probab=73.25 E-value=6.8 Score=43.88 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=45.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcceEEECCCCHHHHHHHHHH-----c
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLADRTYITPMTPELVEQVLEK-----E 166 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~i~p~~~~~v~~i~~~-----~ 166 (1190)
|+|||+|++.. -|..+++.|.+.|++|++++.++....... .-......+-.+.+.+.++++. .
T Consensus 2 k~vlItGasgg----------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 2 PVVLITGCSSG----------IGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CEEEEecCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 68999997642 278899999999999999876543211000 0011122344456666655543 2
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|.++...+
T Consensus 72 ~id~vi~~ag 81 (274)
T PRK05693 72 GLDVLINNAG 81 (274)
T ss_pred CCCEEEECCC
Confidence 6899986654
No 347
>PRK06182 short chain dehydrogenase; Validated
Probab=73.08 E-value=7.7 Score=43.42 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceEEECCCCHHHHHHHHHH-----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
.++|+|+|++.- -|..+++.|.+.|++|++++.++...... ..-......+-.+.+.+.+++++
T Consensus 3 ~k~vlItGasgg----------iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 3 KKVALVTGASSG----------IGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 468999997642 27889999999999999998765421100 00011112333456666655553
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|.++...+
T Consensus 73 ~~id~li~~ag 83 (273)
T PRK06182 73 GRIDVLVNNAG 83 (273)
T ss_pred CCCCEEEECCC
Confidence 27899987654
No 348
>PRK08177 short chain dehydrogenase; Provisional
Probab=73.04 E-value=10 Score=41.03 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=45.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcc-eEEECC-CCHHHHHHHHHH---cC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD-RTYITP-MTPELVEQVLEK---ER 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~i~p-~~~~~v~~i~~~---~~ 167 (1190)
++|+|+|+... -|..+++.|.+.|++|++++.++.....-..... ..+... .+.+.+.++++. .+
T Consensus 2 k~vlItG~sg~----------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (225)
T PRK08177 2 RTALIIGASRG----------LGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQR 71 (225)
T ss_pred CEEEEeCCCch----------HHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCC
Confidence 58999997642 2788999999999999999877643211001111 112222 244555554443 47
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|.|+...+
T Consensus 72 id~vi~~ag 80 (225)
T PRK08177 72 FDLLFVNAG 80 (225)
T ss_pred CCEEEEcCc
Confidence 999886554
No 349
>PRK08177 short chain dehydrogenase; Provisional
Probab=72.91 E-value=3.6 Score=44.57 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=29.5
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV 690 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~ 690 (1190)
++|+|+|+... +|+.+ ++.+.+.|+++++++.+++..
T Consensus 2 k~vlItG~sg~-iG~~l---------a~~l~~~G~~V~~~~r~~~~~ 38 (225)
T PRK08177 2 RTALIIGASRG-LGLGL---------VDRLLERGWQVTATVRGPQQD 38 (225)
T ss_pred CEEEEeCCCch-HHHHH---------HHHHHhCCCEEEEEeCCCcch
Confidence 67999997764 66654 888999999999999887543
No 350
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=72.69 E-value=5.1 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
..++|+|+|||.. |...++.|.+.|++|.++++.
T Consensus 12 ~~~~vlVvGGG~v-----------a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKI-----------AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEEcCc
Confidence 4679999999975 667889999999999999643
No 351
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=72.61 E-value=15 Score=41.10 Aligned_cols=111 Identities=20% Similarity=0.317 Sum_probs=60.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCC-CccCc-ceEEECCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMT-DPGLA-DRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~-~~~~a-d~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
+||+|+|.|.+ |+.+++.+.+. +.++..+......... ..... ...+.. + +.++ ..++|
T Consensus 2 ~rVgIiG~G~i-----------G~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~--d---~~~l--~~~~D 63 (265)
T PRK13303 2 MKVAMIGFGAI-----------GAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVS--S---VDAL--PQRPD 63 (265)
T ss_pred cEEEEECCCHH-----------HHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeC--C---HHHh--ccCCC
Confidence 48999999965 77888888876 6777666422111100 00010 001111 2 2233 46799
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
+|+-+.+.....+.+. .+-+.|.+++-.++.+..........++.+++.|..
T Consensus 64 vVve~t~~~~~~e~~~------~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 64 LVVECAGHAALKEHVV------PILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred EEEECCCHHHHHHHHH------HHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 9987776433322222 223457888755655553333345566777787765
No 352
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=72.39 E-value=14 Score=42.36 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=44.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~d~V 171 (1190)
++|||+|+.. +-|..+++.|.+.|++|++++.++..........-..+ .+..+.+.+.++++ ++|.|
T Consensus 1 ~~vlItG~~G----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~v 68 (328)
T TIGR03466 1 MKVLVTGATG----------FVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVA--GCRAL 68 (328)
T ss_pred CeEEEECCcc----------chhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHh--CCCEE
Confidence 3799999753 23889999999999999999876543211111111222 33345667777665 67888
Q ss_pred Eec
Q 001014 172 LPT 174 (1190)
Q Consensus 172 ip~ 174 (1190)
+-.
T Consensus 69 i~~ 71 (328)
T TIGR03466 69 FHV 71 (328)
T ss_pred EEe
Confidence 743
No 353
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.33 E-value=4.1 Score=42.41 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=46.0
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQ 725 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~ 725 (1190)
|+|+|+.+. +|+ .+++.|.+.|++|+++..++..... ..-.+....+..+.+.+.+..+ +.|.|+..
T Consensus 1 I~V~GatG~-vG~---------~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGF-VGR---------ALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALK--GADAVIHA 67 (183)
T ss_dssp EEEETTTSH-HHH---------HHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHT--TSSEEEEC
T ss_pred eEEECCCCh-HHH---------HHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhh--hcchhhhh
Confidence 789998443 544 5599999999999999988764332 1111222223455677777665 68888877
Q ss_pred cC
Q 001014 726 FG 727 (1190)
Q Consensus 726 ~g 727 (1190)
.+
T Consensus 68 ~~ 69 (183)
T PF13460_consen 68 AG 69 (183)
T ss_dssp CH
T ss_pred hh
Confidence 76
No 354
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.20 E-value=5.1 Score=39.83 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCe-EEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYE-VILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~-vi~v~~~~ 136 (1190)
..++|||+|+|.. |+.++.+|.+.|++ +.+++.+.
T Consensus 11 ~~~~vlviGaGg~-----------ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGA-----------ARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHH-----------HHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHH-----------HHHHHHHHHHcCCCEEEEEECCH
Confidence 3579999999964 78999999999998 77777543
No 355
>PRK05993 short chain dehydrogenase; Provisional
Probab=72.09 E-value=7.8 Score=43.57 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEEECCCCHHHHHHHHHH-----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
+++|+|+|++.. -|..+++.|.+.|++|++++.++........ -.+....+-.+.+.+.++++.
T Consensus 4 ~k~vlItGasgg----------iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 4 KRSILITGCSSG----------IGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 468999998542 2788999999999999999876542110000 011112333355555544442
Q ss_pred -cCCCEEEecC
Q 001014 166 -ERPDALLPTM 175 (1190)
Q Consensus 166 -~~~d~Vip~~ 175 (1190)
.++|.++...
T Consensus 74 ~g~id~li~~A 84 (277)
T PRK05993 74 GGRLDALFNNG 84 (277)
T ss_pred CCCccEEEECC
Confidence 2578887543
No 356
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.01 E-value=5.2 Score=46.03 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
..+++|.|||+|.+ |..++..+...|++|+++|.++.
T Consensus 5 ~~i~~VaVIGaG~M-----------G~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 5 TDIKTFAAIGSGVI-----------GSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCCEEEEECcCHH-----------HHHHHHHHHhCCCeEEEEeCCHH
Confidence 34679999999965 77888888999999999987654
No 357
>PRK06179 short chain dehydrogenase; Provisional
Probab=72.01 E-value=18 Score=40.27 Aligned_cols=73 Identities=25% Similarity=0.375 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHH-----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~----- 165 (1190)
.++|+|+|+... -|..+++.|.+.|++|++++.++........ . ..+ .+-.+.+.+.++++.
T Consensus 4 ~~~vlVtGasg~----------iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-~-~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTGASSG----------IGRATAEKLARAGYRVFGTSRNPARAAPIPG-V-ELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEecCCCH----------HHHHHHHHHHHCCCEEEEEeCChhhccccCC-C-eeEEeecCCHHHHHHHHHHHHHhC
Confidence 358999997642 2788999999999999999877543321111 1 222 333466666665553
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 72 g~~d~li~~ag 82 (270)
T PRK06179 72 GRIDVLVNNAG 82 (270)
T ss_pred CCCCEEEECCC
Confidence 25899887665
No 358
>PRK07856 short chain dehydrogenase; Provisional
Probab=72.00 E-value=6.3 Score=43.48 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
..|+++|+|++.. ||+.+ ++.|.+.|+++++++.+++
T Consensus 5 ~~k~~lItGas~g-IG~~l---------a~~l~~~g~~v~~~~r~~~ 41 (252)
T PRK07856 5 TGRVVLVTGGTRG-IGAGI---------ARAFLAAGATVVVCGRRAP 41 (252)
T ss_pred CCCEEEEeCCCch-HHHHH---------HHHHHHCCCEEEEEeCChh
Confidence 5689999998764 65544 8899999999999988764
No 359
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=71.70 E-value=7.4 Score=42.64 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-----CccCcc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-----DPGLAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-----~~~~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
+.++|||+|++.. -|..+++.|.+.|++|++++.++..... .....+ ..+ .+-.+.+.+.+.+
T Consensus 5 ~~~~ilItGasg~----------iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 5 EGRVALVTGAARG----------IGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCCEEEEcCCCCc----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 3468999997643 2788999999999999999876421100 000011 112 2333566666665
Q ss_pred HH-----cCCCEEEecCC
Q 001014 164 EK-----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~-----~~~d~Vip~~~ 176 (1190)
+. .++|+|+...+
T Consensus 75 ~~~~~~~~~~d~vi~~ag 92 (251)
T PRK12826 75 AAGVEDFGRLDILVANAG 92 (251)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 53 26898886654
No 360
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.59 E-value=5.9 Score=48.12 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=50.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccC---CcceeecCCcHHHHHHHhhhcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDT---SDRLYFEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~---ad~~~~~p~~~e~v~~i~~~~~ 718 (1190)
..++|+|+|.|.. +..+++.|.+.|+++++++.+|+........ ..-.+.++.+. +.+.-+.-.+
T Consensus 230 ~~~~iiIiG~G~~-----------g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~-~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGGNI-----------GYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQ-ELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCH-HHHHhcCCcc
Confidence 4689999999884 5566999999999999999988754321110 11122234444 4444455567
Q ss_pred CCccccccCCc
Q 001014 719 PEGIIVQFGGQ 729 (1190)
Q Consensus 719 ~d~Vi~~~g~~ 729 (1190)
++.|+...+..
T Consensus 298 a~~vi~~~~~~ 308 (453)
T PRK09496 298 ADAFIALTNDD 308 (453)
T ss_pred CCEEEECCCCc
Confidence 88888877755
No 361
>PLN02778 3,5-epimerase/4-reductase
Probab=71.54 E-value=13 Score=42.39 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
.|||||+|+.. +-|..+++.|.+.|++|++...+ ..+.+.+...++..++|.|
T Consensus 9 ~~kiLVtG~tG----------fiG~~l~~~L~~~g~~V~~~~~~-----------------~~~~~~v~~~l~~~~~D~V 61 (298)
T PLN02778 9 TLKFLIYGKTG----------WIGGLLGKLCQEQGIDFHYGSGR-----------------LENRASLEADIDAVKPTHV 61 (298)
T ss_pred CCeEEEECCCC----------HHHHHHHHHHHhCCCEEEEecCc-----------------cCCHHHHHHHHHhcCCCEE
Confidence 36899999864 34899999999999998754211 1133556666777789998
Q ss_pred EecC
Q 001014 172 LPTM 175 (1190)
Q Consensus 172 ip~~ 175 (1190)
+-..
T Consensus 62 iH~A 65 (298)
T PLN02778 62 FNAA 65 (298)
T ss_pred EECC
Confidence 8443
No 362
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.34 E-value=23 Score=36.89 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=27.2
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCe-EEEEccCC
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYE-VILINSNP 136 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~-vi~v~~~~ 136 (1190)
||+|+|.|.+ |..+++.|.+.|+. +.++|.+.
T Consensus 1 ~VlViG~Ggl-----------Gs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGL-----------GSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHH-----------HHHHHHHHHHcCCCeEEEEeCCE
Confidence 5999999975 77899999999995 88888764
No 363
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.27 E-value=16 Score=42.56 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcC-C
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLER-P 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~-~ 719 (1190)
..++|+|.|+|+. +..+++.++.+|. ++++++.+++......++.-...+.+.+ +++.++.+... +
T Consensus 169 ~g~~VlV~G~G~v-----------G~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~~~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGVGPI-----------GCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN-DDLDHYKAEKGYF 236 (343)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc-ccHHHHhccCCCC
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhh------------------ccCHHHHHHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDA------------------AEDRERFNAIIKE 781 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~------------------~~DK~~~~~~l~~ 781 (1190)
|.|+-..|+......+..+- +.| +++-.+|........ ..+-...-+++++
T Consensus 237 D~vid~~G~~~~~~~~~~~l----------~~~-G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~ 305 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVT----------RAK-GVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLAN 305 (343)
T ss_pred CEEEECCCCHHHHHHHHHHh----------hcC-CEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHc
Q ss_pred cCCCC-CCceeecCHHHHHHHHHHh
Q 001014 782 LSIEQ-PKGGIAKSEADALAIAKEI 805 (1190)
Q Consensus 782 ~gIp~-p~~~~~~s~~e~~~~~~~i 805 (1190)
..++. |--...-..+++.++.+.+
T Consensus 306 g~i~~~~~i~~~~~l~~~~~A~~~~ 330 (343)
T PRK09880 306 GVINPLPLLSAEYPFTDLEEALIFA 330 (343)
T ss_pred CCCCchhheEEEEEHHHHHHHHHHH
No 364
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.04 E-value=1e+02 Score=30.81 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=44.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
++|++...+ +.-||.....+...|+..||+|+.+..+ ...+.+.+.+.++++|+|.
T Consensus 4 ~~vl~~~~~------gD~H~lG~~iv~~~lr~~G~eVi~LG~~------------------vp~e~i~~~a~~~~~d~V~ 59 (137)
T PRK02261 4 KTVVLGVIG------ADCHAVGNKILDRALTEAGFEVINLGVM------------------TSQEEFIDAAIETDADAIL 59 (137)
T ss_pred CEEEEEeCC------CChhHHHHHHHHHHHHHCCCEEEECCCC------------------CCHHHHHHHHHHcCCCEEE
Confidence 466655544 4557777788889999999999988532 1347888999999999998
Q ss_pred ecCC
Q 001014 173 PTMG 176 (1190)
Q Consensus 173 p~~~ 176 (1190)
..+-
T Consensus 60 lS~~ 63 (137)
T PRK02261 60 VSSL 63 (137)
T ss_pred EcCc
Confidence 7654
No 365
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=71.02 E-value=16 Score=38.36 Aligned_cols=86 Identities=17% Similarity=0.045 Sum_probs=60.5
Q ss_pred HHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhcCCCHHHH
Q 001014 508 QLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFLLTQSVSNMTKDDFYEVKRRGFSDKQI 587 (1190)
Q Consensus 508 ~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~g~~~~~~ 587 (1190)
+.++.|.+++.+.+++++.+-..=.+ -.||+=-|.++-+..+.+++ ....+.+|-++|=|-.++
T Consensus 30 eel~~L~~ls~~~l~~L~~~~v~~~~-------i~in~~~l~~~L~~~~~~~~---------~~~~idr~L~lGAS~~mm 93 (180)
T PF11198_consen 30 EELDALQQLSLDDLHYLANSSVSFVS-------ISINHDVLWRLLEQARREQQ---------EQQLIDRALRLGASIEMM 93 (180)
T ss_pred HHHHHHhCCCHHHHHHHhcCCcceee-------eeeCHHHHHHHHHHHHHHHH---------HHHHHHHHHHcCCCHHHH
Confidence 56778888877777766643321111 13555455555554444333 235677899999999999
Q ss_pred HHHhCCCHHHHHHHHHhcCCcc
Q 001014 588 AFATKSTEKEVREKRLSLGVIP 609 (1190)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~ 609 (1190)
.++.|++..+|..+|+-.|+.+
T Consensus 94 ~~~FGls~~ev~~rR~llgi~~ 115 (180)
T PF11198_consen 94 QRLFGLSSAEVAARRRLLGIPV 115 (180)
T ss_pred HHHHCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999875
No 366
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=70.98 E-value=7.1 Score=46.10 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=30.2
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
++.+++|||+|+.+. ||+ ++++.|.+.|++|+.++..+
T Consensus 18 ~~~~~~IlVtGgtGf-IG~---------~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGF-IAS---------HIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccH-HHH---------HHHHHHHhCCCEEEEEEecc
Confidence 457789999999554 544 55999999999999998643
No 367
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.88 E-value=11 Score=41.65 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcceEE-ECCCCHHHHHHHHHH---
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLADRTY-ITPMTPELVEQVLEK--- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~-i~p~~~~~v~~i~~~--- 165 (1190)
..|+++|+|++.. | |..+++.|.+.|++|+++........... ...-..+ .+-.+.+.+.++++.
T Consensus 6 ~~k~~lItGas~g-I---------G~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 6 KGKVALITGGTRG-I---------GRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred CCCEEEEeCCCCh-H---------HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 3579999998642 2 78899999999999998754322110000 0001122 333456666655543
Q ss_pred --cCCCEEEecCC
Q 001014 166 --ERPDALLPTMG 176 (1190)
Q Consensus 166 --~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 76 ~~~~id~li~~ag 88 (255)
T PRK06463 76 EFGRVDVLVNNAG 88 (255)
T ss_pred HcCCCCEEEECCC
Confidence 26899886654
No 368
>PRK07577 short chain dehydrogenase; Provisional
Probab=70.78 E-value=24 Score=38.15 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=45.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHH----HHc
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVL----EKE 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~----~~~ 166 (1190)
.++|+|+|+... -|..+++.|.+.|++|++++.++... .....+ .+-.+.+.+.+.+ +..
T Consensus 3 ~k~vlItG~s~~----------iG~~ia~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 3 SRTVLVTGATKG----------IGLALSLRLANLGHQVIGIARSAIDD-----FPGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCEEEEECCCCc----------HHHHHHHHHHHCCCEEEEEeCCcccc-----cCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 368999998642 27889999999999999998765431 111222 3333455444433 345
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 68 ~~d~vi~~ag 77 (234)
T PRK07577 68 PVDAIVNNVG 77 (234)
T ss_pred CCcEEEECCC
Confidence 7899886654
No 369
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.76 E-value=18 Score=40.84 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
..++|.|+|.|. +|++ +++-++.+|++|++++...
T Consensus 181 pG~~vgI~GlGG--LGh~---------aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 181 PGKWVGIVGLGG--LGHM---------AVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred CCcEEEEecCcc--cchH---------HHHHHHHhCcEEEEEeCCc
Confidence 789999999999 6764 4889999999999998764
No 370
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.69 E-value=12 Score=42.61 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=46.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-c---c-Ccc-eEE-ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-P---G-LAD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~---~-~ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
.++|+|+|++.. -|+.+++.|.+.|++|++++.++...... . . -.+ ..+ .+-.+.+.+.++++
T Consensus 40 ~k~vlItGasgg----------IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 40 GKRILLTGASSG----------IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 478999998642 27899999999999999998764321000 0 0 011 122 22335565555554
Q ss_pred H-----cCCCEEEecCC
Q 001014 165 K-----ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-----~~~d~Vip~~~ 176 (1190)
. .++|.++...+
T Consensus 110 ~~~~~~g~id~li~~AG 126 (293)
T PRK05866 110 DVEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 2 26899987665
No 371
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=70.38 E-value=17 Score=42.81 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=28.6
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCC
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSN 686 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~ 686 (1190)
.-.+.+|+|+|.|+. +..+++.|.+.|+ ++.++|.+
T Consensus 38 ~l~~~~VliiG~Ggl-----------G~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGL-----------GCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEeCC
Confidence 346679999999994 5666999999998 66677765
No 372
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=70.32 E-value=6.1 Score=45.98 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=42.7
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc-c-cC--------Ccce--e-ecCCcHHHH
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD-Y-DT--------SDRL--Y-FEPLTVEDV 710 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~-~-~~--------ad~~--~-~~p~~~e~v 710 (1190)
|+|||+|+.+. ||+ ++++.|.+.|++|++++.++...... . .. .... + .+-.+.+.+
T Consensus 1 ~~vlVTGatGf-IG~---------~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l 70 (343)
T TIGR01472 1 KIALITGITGQ-DGS---------YLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNL 70 (343)
T ss_pred CeEEEEcCCCc-HHH---------HHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHH
Confidence 58999998664 555 55999999999999988765321100 0 00 0011 1 122345667
Q ss_pred HHHhhhcCCCccc
Q 001014 711 LNVIDLERPEGII 723 (1190)
Q Consensus 711 ~~i~~~~~~d~Vi 723 (1190)
.++++..++|.|+
T Consensus 71 ~~~~~~~~~d~Vi 83 (343)
T TIGR01472 71 RRIIDEIKPTEIY 83 (343)
T ss_pred HHHHHhCCCCEEE
Confidence 7777766777766
No 373
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=70.30 E-value=9.8 Score=48.13 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=29.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..+|+|+|||+ +|..++.+|++.|++|.++...+
T Consensus 81 ~~~VlIVGgGI-----------aGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGI-----------GGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCH-----------HHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999995 38899999999999999998654
No 374
>PRK12829 short chain dehydrogenase; Provisional
Probab=70.24 E-value=7.8 Score=42.89 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcc---eEE-ECCCCHHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLAD---RTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad---~~~-i~p~~~~~v~~i~~~ 165 (1190)
+.++|||+|++.. -|+.+++.|.+.|++|++++.++...... ....+ ..+ .+..+.+.+.+.+++
T Consensus 10 ~~~~vlItGa~g~----------iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASG----------IGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCc----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 4579999998753 27899999999999999998764321100 00011 112 333456666555543
Q ss_pred -----cCCCEEEecCC
Q 001014 166 -----ERPDALLPTMG 176 (1190)
Q Consensus 166 -----~~~d~Vip~~~ 176 (1190)
.++|+|+...+
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 37899986655
No 375
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=70.14 E-value=34 Score=36.45 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=67.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCe-EEEEccCCCCCCCCccCcceEEECC-------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYE-VILINSNPATIMTDPGLADRTYITP-------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~i~p-------~~~~~v~~i~ 163 (1190)
..+|+|+|.|.+ |..+++.|-..|+. +.++|.+.-... .+....++.+ .-.+...+.+
T Consensus 19 ~s~VlviG~ggl-----------Gsevak~L~~~GVg~i~lvD~d~ve~s---nl~rq~~~~~~~~~iG~~Ka~~~~~~L 84 (198)
T cd01485 19 SAKVLIIGAGAL-----------GAEIAKNLVLAGIDSITIVDHRLVSTE---DLGSNFFLDAEVSNSGMNRAAASYEFL 84 (198)
T ss_pred hCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEECCcCChh---cCcccEecccchhhcCchHHHHHHHHH
Confidence 469999999975 67899999999997 667776543221 2333333333 1234556667
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS 231 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~ 231 (1190)
++.+|++-+-....... +.... ..+.+..+.+-+...+.... +....++++++++|..-.
T Consensus 85 ~~lNp~v~i~~~~~~~~-~~~~~--~~~~~~~~dvVi~~~d~~~~-----~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 85 QELNPNVKLSIVEEDSL-SNDSN--IEEYLQKFTLVIATEENYER-----TAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHCCCCEEEEEecccc-cchhh--HHHHHhCCCEEEECCCCHHH-----HHHHHHHHHHcCCCEEEE
Confidence 77788875544432110 00000 12345555555544333222 334557888999876543
No 376
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=69.69 E-value=4.7 Score=47.60 Aligned_cols=39 Identities=23% Similarity=0.512 Sum_probs=33.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS 691 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s 691 (1190)
-.+.+||||||.- +..++..|.++||+|+++..+|.--.
T Consensus 123 v~~svLVIGGGvA-----------GitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 123 VSKSVLVIGGGVA-----------GITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hccceEEEcCcHH-----------HHHHHHHHHHcCCeEEEEecCCcccc
Confidence 3578999999984 78999999999999999999886543
No 377
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=69.67 E-value=26 Score=38.22 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEEE-----CCCCHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTYI-----TPMTPELVEQVLE 164 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~i-----~p~~~~~v~~i~~ 164 (1190)
...+|+|+|.|.+ |..+++.|.+.|+ +++++|.+.-... .+....+. ...-.+.+.+.++
T Consensus 20 ~~~~VlivG~Ggl-----------Gs~va~~La~~Gvg~i~lvD~D~ve~s---NL~Rq~l~~~~diG~~Ka~~~~~~l~ 85 (228)
T cd00757 20 KNARVLVVGAGGL-----------GSPAAEYLAAAGVGKLGLVDDDVVELS---NLQRQILHTEADVGQPKAEAAAERLR 85 (228)
T ss_pred hCCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEcCCEEcCc---ccccccccChhhCCChHHHHHHHHHH
Confidence 3469999999976 7789999999998 5666766543221 22222222 2223456666777
Q ss_pred HcCCCEEEecC
Q 001014 165 KERPDALLPTM 175 (1190)
Q Consensus 165 ~~~~d~Vip~~ 175 (1190)
+.+|+.-+-..
T Consensus 86 ~~np~~~i~~~ 96 (228)
T cd00757 86 AINPDVEIEAY 96 (228)
T ss_pred HhCCCCEEEEe
Confidence 77776544333
No 378
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=69.57 E-value=9.1 Score=47.26 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
++++|+|+|+.+. ||+. +++.|.+.|++|+++..+++.
T Consensus 79 ~gKvVLVTGATGg-IG~a---------LAr~LLk~G~~Vval~Rn~ek 116 (576)
T PLN03209 79 DEDLAFVAGATGK-VGSR---------TVRELLKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCEEEEECCCCH-HHHH---------HHHHHHHCCCeEEEEeCCHHH
Confidence 5678999998764 6554 489999999999998877554
No 379
>PRK06179 short chain dehydrogenase; Provisional
Probab=69.42 E-value=7.7 Score=43.25 Aligned_cols=39 Identities=28% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV 690 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~ 690 (1190)
+.++|+|+|++.. ||+.+ ++.|.+.|++|++++.+++..
T Consensus 3 ~~~~vlVtGasg~-iG~~~---------a~~l~~~g~~V~~~~r~~~~~ 41 (270)
T PRK06179 3 NSKVALVTGASSG-IGRAT---------AEKLARAGYRVFGTSRNPARA 41 (270)
T ss_pred CCCEEEEecCCCH-HHHHH---------HHHHHHCCCEEEEEeCChhhc
Confidence 3578999998764 65544 888999999999998876543
No 380
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=69.37 E-value=5.8 Score=46.85 Aligned_cols=36 Identities=28% Similarity=0.632 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
..+.+||||||. +|.+++..|.++|++|+++..+|.
T Consensus 123 v~~svLVIGGGv-----------AGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGV-----------AGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcH-----------HHHHHHHHHHHcCCeEEEEecCCc
Confidence 346899999994 588999999999999999987775
No 381
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=69.29 E-value=6.9 Score=41.91 Aligned_cols=34 Identities=18% Similarity=0.476 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
..++|||+|+|.. |...++.|.+.|.+|++++++
T Consensus 9 ~~k~vLVIGgG~v-----------a~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKV-----------AGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999975 567889999999999999754
No 382
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.16 E-value=7 Score=40.90 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
...++|+|+|-|.+ |+.+++.|+..|.+|+.+++.+.
T Consensus 34 l~g~tvgIiG~G~I-----------G~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIGYGRI-----------GRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEESTSHH-----------HHHHHHHHHHTT-EEEEEESSCH
T ss_pred cCCCEEEEEEEcCC-----------cCeEeeeeecCCceeEEecccCC
Confidence 35679999999976 88999999999999999987665
No 383
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.12 E-value=23 Score=41.87 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSN 686 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~ 686 (1190)
...++|+|+|.|.. +..+++.|.+.|+ ++.++|.+
T Consensus 133 l~~~~VlvvG~GG~-----------Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGL-----------GSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHH-----------HHHHHHHHHHcCCCeEEEEeCC
Confidence 35678999999984 5666999999999 46677765
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=69.02 E-value=4.5 Score=38.17 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..++|||+|+|+. |..-++.|.+.|.+|.++.+..
T Consensus 6 ~~~~vlVvGgG~v-----------a~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPV-----------AARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHH-----------HHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEECCch
Confidence 3579999999975 5678899999999999998763
No 385
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=68.85 E-value=7 Score=46.79 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=54.7
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCc--HHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLT--VEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~--~e~v~~i~~~~~~ 719 (1190)
..+||+|+|-|-. ++.+++.|.+.|+++++.|.+|...... .. ....+... ...... -....+
T Consensus 6 ~~~kv~V~GLG~s-----------G~a~a~~L~~~G~~v~v~D~~~~~~~~~-~~--~~~~~~i~~~~g~~~~-~~~~~~ 70 (448)
T COG0771 6 QGKKVLVLGLGKS-----------GLAAARFLLKLGAEVTVSDDRPAPEGLA-AQ--PLLLEGIEVELGSHDD-EDLAEF 70 (448)
T ss_pred cCCEEEEEecccc-----------cHHHHHHHHHCCCeEEEEcCCCCccchh-hh--hhhccCceeecCccch-hccccC
Confidence 3789999997773 6777999999999999999887762111 00 00000000 000000 223457
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEcc
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWG 760 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g 760 (1190)
|.|+...|-.....+..... +.| ++++|
T Consensus 71 d~vV~SPGi~~~~p~v~~A~----------~~g---i~i~~ 98 (448)
T COG0771 71 DLVVKSPGIPPTHPLVEAAK----------AAG---IEIIG 98 (448)
T ss_pred CEEEECCCCCCCCHHHHHHH----------HcC---CcEEe
Confidence 88887777553334555555 778 88776
No 386
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.78 E-value=7.4 Score=47.24 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=45.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEE-ECCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTY-ITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~-i~p~~~~~v~~i~~~~~~d~ 170 (1190)
|+|+|+|+|.+ |+.+++.|.+.|+++++++.++........ ..-..+ -...+.+.+.+ +.-.++|.
T Consensus 1 m~viIiG~G~i-----------g~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~~~~~a~~ 68 (453)
T PRK09496 1 MKIIIVGAGQV-----------GYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLRE-AGAEDADL 68 (453)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHH-cCCCcCCE
Confidence 37999999965 789999999999999999887653221111 111222 23334343333 22346888
Q ss_pred EEecCCC
Q 001014 171 LLPTMGG 177 (1190)
Q Consensus 171 Vip~~~g 177 (1190)
++.+.+.
T Consensus 69 vi~~~~~ 75 (453)
T PRK09496 69 LIAVTDS 75 (453)
T ss_pred EEEecCC
Confidence 8876653
No 387
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=68.73 E-value=16 Score=42.40 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=29.3
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNP 687 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p 687 (1190)
-...||+|+|.|.. +..+++.|.+.|+ ++.++|.+.
T Consensus 22 L~~~~VlVvG~Ggl-----------Gs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGAL-----------GTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHH-----------HHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999984 5566999999999 788888764
No 388
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=68.65 E-value=16 Score=43.41 Aligned_cols=113 Identities=24% Similarity=0.345 Sum_probs=65.3
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCC-C-eEEEEccCCCCCCC-----CccCcceEEECCCCHHHHHHHHHHcC
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEG-Y-EVILINSNPATIMT-----DPGLADRTYITPMTPELVEQVLEKER 167 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-~-~vi~v~~~~~~~~~-----~~~~ad~~~i~p~~~~~v~~i~~~~~ 167 (1190)
|+|+|+|. .|..+++.|.+.+ + ++++.+.+...... ...-.....++..+.+.+.++++ +
T Consensus 1 IlvlG~G~-----------vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~ 67 (386)
T PF03435_consen 1 ILVLGAGR-----------VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--G 67 (386)
T ss_dssp EEEE--SH-----------HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--T
T ss_pred CEEEcCcH-----------HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--c
Confidence 79999984 3888999998886 5 88888877643110 11122233355667778888877 5
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
.|+|+.+.+......++. .+-+.|++++-++. ....-....+.+++.|+....
T Consensus 68 ~dvVin~~gp~~~~~v~~------~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 68 CDVVINCAGPFFGEPVAR------ACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp SSEEEE-SSGGGHHHHHH------HHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-
T ss_pred CCEEEECCccchhHHHHH------HHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEe
Confidence 699998888664443332 46667899985433 112222234455677776543
No 389
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=68.41 E-value=11 Score=40.19 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
++++.|+|.|. ||.++ ++.+.+.|++|++-+++.+. ...+...+..|. +.-..........|.|
T Consensus 1 m~~~~i~GtGn--iG~al---------A~~~a~ag~eV~igs~r~~~----~~~a~a~~l~~~-i~~~~~~dA~~~aDVV 64 (211)
T COG2085 1 MMIIAIIGTGN--IGSAL---------ALRLAKAGHEVIIGSSRGPK----ALAAAAAALGPL-ITGGSNEDAAALADVV 64 (211)
T ss_pred CcEEEEeccCh--HHHHH---------HHHHHhCCCeEEEecCCChh----HHHHHHHhhccc-cccCChHHHHhcCCEE
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEE--ccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRI--WGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~--~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+.....+....+...+.+++. .+.+-... .++ .+.+.+....-........+.+-+ |...++.....+..
T Consensus 65 vLAVP~~a~~~v~~~l~~~~~-~KIvID~t---np~~~~~~~~~~~~~~~~~saae~va~~l----p~akVVkAFn~i~a 136 (211)
T COG2085 65 VLAVPFEAIPDVLAELRDALG-GKIVIDAT---NPIEVNGEPGDLYLVPSEGSAAEIVAKLL----PGAKVVKAFNTIPA 136 (211)
T ss_pred EEeccHHHHHhHHHHHHHHhC-CeEEEecC---CCccccCCccccccCCCCCcHHHHHHHHC----CCcchhhhhcccCH
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcE
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPV 847 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~v 847 (1190)
.. +.=.-+|. +.+.+.++.|.++..+.+.++.+..+-.++
T Consensus 137 ~~----l~~~~~~~---~~~~v~vagDD~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 137 AV----LADLAKPG---GRRDVLVAGDDAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred HH----hccCCCcC---CceeEEEecCcHHHHHHHHHHHHhcCccee
No 390
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=68.27 E-value=9.7 Score=44.21 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
+.++|||.|+... ||+ ++++.|.+.|++|++++..+
T Consensus 5 ~~~~vlVTGatGf-iG~---------~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 5 PRKVALITGITGQ-DGS---------YLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCEEEEECCCCc-cHH---------HHHHHHHHCCCEEEEEeccc
Confidence 4578999998664 555 55999999999999987654
No 391
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=68.26 E-value=3.9 Score=48.85 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCCCCCcEEEEECC
Q 001014 572 DDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAPTQKKKVLILGG 651 (1190)
Q Consensus 572 ~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~kVlIlG~ 651 (1190)
+.+..|++.|+....+-++.+.....=++.|.+-+|.-.=--|-..|-+.. .........++|||+|+
T Consensus 122 ~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la------------~~~~~~l~~kkvlviGa 189 (414)
T PRK13940 122 DSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLA------------KRQLDNISSKNVLIIGA 189 (414)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHH------------HHHhcCccCCEEEEEcC
Confidence 456678899999999988888777777788888776432222222221111 00011245689999999
Q ss_pred CCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCC
Q 001014 652 GPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNP 687 (1190)
Q Consensus 652 G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p 687 (1190)
|.. +..+++.|.+.|+. +.+++.++
T Consensus 190 G~~-----------a~~va~~L~~~g~~~I~V~nRt~ 215 (414)
T PRK13940 190 GQT-----------GELLFRHVTALAPKQIMLANRTI 215 (414)
T ss_pred cHH-----------HHHHHHHHHHcCCCEEEEECCCH
Confidence 993 56669999999975 55666543
No 392
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=68.26 E-value=9.6 Score=42.38 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
..|+++|+|++.. ||.. +++.|.+.|+++++++.++..
T Consensus 8 ~~k~vlItG~s~g-IG~~---------la~~l~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 8 QGKIIIVTGGSSG-IGLA---------IVKELLANGANVVNADIHGGD 45 (266)
T ss_pred CCCEEEEeCCCCh-HHHH---------HHHHHHHCCCEEEEEeCCccc
Confidence 4688999998764 5554 489999999999999877654
No 393
>PRK12367 short chain dehydrogenase; Provisional
Probab=68.16 E-value=15 Score=40.49 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC-CCCCCccCcceEE-ECCCCHHHHHHHHHHcC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA-TIMTDPGLADRTY-ITPMTPELVEQVLEKER 167 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~ 167 (1190)
.+.++++|+|++.. | |..+++.+.+.|++|++++.++. ............+ .+-.+.+.+.+.. .+
T Consensus 12 l~~k~~lITGas~g-I---------G~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~ 79 (245)
T PRK12367 12 WQGKRIGITGASGA-L---------GKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQL--AS 79 (245)
T ss_pred hCCCEEEEEcCCcH-H---------HHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhc--CC
Confidence 34579999998642 2 78899999999999999876651 1100000011122 2333455555433 36
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|.++...+
T Consensus 80 iDilVnnAG 88 (245)
T PRK12367 80 LDVLILNHG 88 (245)
T ss_pred CCEEEECCc
Confidence 899987655
No 394
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.04 E-value=7.6 Score=41.71 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..++|||+|||.. |..-++.|.+.|.+|++++++.
T Consensus 8 ~gk~vlVvGgG~v-----------a~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDV-----------ALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHH-----------HHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999964 6778899999999999998654
No 395
>PRK06483 dihydromonapterin reductase; Provisional
Probab=68.02 E-value=12 Score=40.80 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEE-ECCCCHHHHHHHHHH----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTY-ITPMTPELVEQVLEK---- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~-i~p~~~~~v~~i~~~---- 165 (1190)
.|++||.|++.- | |+.+++.|.+.|++|++++.++........ ..-..+ .+..+.+.+.+++++
T Consensus 2 ~k~vlItGas~g-I---------G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 2 PAPILITGAGQR-I---------GLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred CceEEEECCCCh-H---------HHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 468999998742 2 788999999999999999876532110000 000122 333455555554443
Q ss_pred -cCCCEEEecCC
Q 001014 166 -ERPDALLPTMG 176 (1190)
Q Consensus 166 -~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 72 ~~~id~lv~~ag 83 (236)
T PRK06483 72 TDGLRAIIHNAS 83 (236)
T ss_pred CCCccEEEECCc
Confidence 24888886554
No 396
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.95 E-value=6.6 Score=39.07 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=30.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~ 688 (1190)
.+.++|+|+|+|.. +..++.+|.++|++ +.+++.+++
T Consensus 10 l~~~~vlviGaGg~-----------ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 10 LKGKRVLVIGAGGA-----------ARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp GTTSEEEEESSSHH-----------HHHHHHHHHHTTSSEEEEEESSHH
T ss_pred cCCCEEEEECCHHH-----------HHHHHHHHHHcCCCEEEEEECCHH
Confidence 46799999999994 66779999999998 777776543
No 397
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=67.86 E-value=7.5 Score=42.99 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.+++|||+|+.. +-|+.+++.|.+.|++|+++..++.
T Consensus 16 ~~~~ilItGasG----------~iG~~l~~~L~~~g~~V~~~~R~~~ 52 (251)
T PLN00141 16 KTKTVFVAGATG----------RTGKRIVEQLLAKGFAVKAGVRDVD 52 (251)
T ss_pred cCCeEEEECCCc----------HHHHHHHHHHHhCCCEEEEEecCHH
Confidence 457999999642 2388999999999999998866543
No 398
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=67.83 E-value=8.6 Score=47.34 Aligned_cols=132 Identities=17% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCc---------------------------
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVST--------------------------- 692 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~--------------------------- 692 (1190)
..+.++|.|||+|. +|.+| +..+...|++|++.|.+++....
T Consensus 4 ~~~i~~V~VIGaG~--MG~gI---------A~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~ 72 (507)
T PRK08268 4 LPSIATVAVIGAGA--MGAGI---------AQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAAL 72 (507)
T ss_pred cCCCCEEEEECCCH--HHHHH---------HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q ss_pred -------------cccCCcceeecCCcHHHHH--HHhhhcCCCccc-cccCCchhhhhhhhHHhhhccCCCccc----CC
Q 001014 693 -------------DYDTSDRLYFEPLTVEDVL--NVIDLERPEGII-VQFGGQTPLKLSLPIHQYLDEHRLPSA----SG 752 (1190)
Q Consensus 693 -------------~~~~ad~~~~~p~~~e~v~--~i~~~~~~d~Vi-~~~g~~~~~~la~~l~~~l~~~~~l~~----~G 752 (1190)
+.|+.-+..++...+...+ ++....+++.|+ .......+..++..+. . .|
T Consensus 73 ~~i~~~~~~~~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~----------~p~r~~G 142 (507)
T PRK08268 73 ARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALK----------HPERVAG 142 (507)
T ss_pred hCeEEeCCHHHhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC----------CcccEEE
Q ss_pred CCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeec-------CHHHHHHHHHHhC-CcEEEecCcC
Q 001014 753 DGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAK-------SEADALAIAKEIG-YPVVVRPSYV 816 (1190)
Q Consensus 753 ~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~-------s~~e~~~~~~~ig-yPvvvKP~~~ 816 (1190)
++++.|.+-. +-..++. ..+.+..+++.+| .|+++|...|
T Consensus 143 ---~hff~Pa~v~---------------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG 190 (507)
T PRK08268 143 ---LHFFNPVPLM---------------------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG 190 (507)
T ss_pred ---EeecCCcccC---------------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC
No 399
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.79 E-value=13 Score=41.95 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEEECCC---CHHHHHHHHHH-
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTYITPM---TPELVEQVLEK- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~i~p~---~~~~v~~i~~~- 165 (1190)
...||||+|+||+ |.-....++.+|. +|++++..+.......++--..+.... +++.+.+.+++
T Consensus 169 ~Gs~vLV~GAGPI-----------Gl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 169 KGSKVLVLGAGPI-----------GLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred cCCeEEEECCcHH-----------HHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhh
Confidence 3469999999998 6678899999986 677777666544333333222221111 24555555543
Q ss_pred ---cCCCEEEecCCChhHHHHHH
Q 001014 166 ---ERPDALLPTMGGQTALNLAV 185 (1190)
Q Consensus 166 ---~~~d~Vip~~~g~~~~~~~~ 185 (1190)
.++|..+-+.+-+...+.++
T Consensus 238 ~g~~~~d~~~dCsG~~~~~~aai 260 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGAEVTIRAAI 260 (354)
T ss_pred ccccCCCeEEEccCchHHHHHHH
Confidence 45899998888776666665
No 400
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=67.61 E-value=16 Score=41.13 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=28.2
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
+|+|+|+.+. +|+ ++++.|.+.|++|.++..+++.
T Consensus 1 ~ilVtGatG~-iG~---------~vv~~L~~~g~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGK-TAS---------RIARLLQAASVPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCCh-HHH---------HHHHHHHhCCCcEEEEeCCCcc
Confidence 5899998654 554 5599999999999999988764
No 401
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.53 E-value=30 Score=41.98 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=38.4
Q ss_pred CcEEEecCCCCCCcceEEeCCHHHHHHHHHHHH---hcCCCCcEEEeeecCC
Q 001014 250 FPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGL---AASLTSQVLVEKSLLG 298 (1190)
Q Consensus 250 ~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~---~~~~~~~vlVEe~I~G 298 (1190)
...|+||...+-|+|+.++++.+++........ .....+.++|+.||+-
T Consensus 200 ~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 200 SWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDR 251 (497)
T ss_pred ceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccC
Confidence 689999999999999999999999988764322 1122567888888874
No 402
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=67.49 E-value=58 Score=37.66 Aligned_cols=44 Identities=18% Similarity=0.474 Sum_probs=33.8
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS 691 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s 691 (1190)
..+.|.|.|-|+ .|+.. .+..++.++.+.|++|.+++.+|...+
T Consensus 30 ~~~ii~v~gkgG--~GKSt----~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 30 KTQIIAIYGKGG--IGKSF----TLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCeEEEEECCCC--CCHHH----HHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 456777887666 67754 677888889999999999999876543
No 403
>PRK06057 short chain dehydrogenase; Provisional
Probab=67.48 E-value=14 Score=40.89 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=47.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceEE-ECCCCHHHHHHHHHH----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRTY-ITPMTPELVEQVLEK---- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~-i~p~~~~~v~~i~~~---- 165 (1190)
.++|+|+|+... -|..+++.+.+.|++|++++.++...... .......+ .+..+.+.+.++++.
T Consensus 7 ~~~vlItGasgg----------IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 7 GRVAVITGGGSG----------IGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCEEEEECCCch----------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 479999998642 27899999999999999997664321100 01111222 344456666665553
Q ss_pred -cCCCEEEecCC
Q 001014 166 -ERPDALLPTMG 176 (1190)
Q Consensus 166 -~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 77 ~~~id~vi~~ag 88 (255)
T PRK06057 77 YGSVDIAFNNAG 88 (255)
T ss_pred cCCCCEEEECCC
Confidence 36899886654
No 404
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=67.43 E-value=8.3 Score=40.70 Aligned_cols=65 Identities=26% Similarity=0.434 Sum_probs=43.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCC-----------CCCcCccccCCcceeecCCcHHH
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSN-----------PETVSTDYDTSDRLYFEPLTVED 709 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~-----------p~~~s~~~~~ad~~~~~p~~~e~ 709 (1190)
....+|||.|||.. ||.++ ++.+.++|-+||+...+ |+-...-.|.+|+ ...++
T Consensus 3 ~tgnTiLITGG~sG-IGl~l---------ak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~-----~~~~~ 67 (245)
T COG3967 3 TTGNTILITGGASG-IGLAL---------AKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADR-----DSRRE 67 (245)
T ss_pred ccCcEEEEeCCcch-hhHHH---------HHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccch-----hhHHH
Confidence 45689999998875 65554 99999999999998776 3222222233332 23667
Q ss_pred HHHHhhhcCCC
Q 001014 710 VLNVIDLERPE 720 (1190)
Q Consensus 710 v~~i~~~~~~d 720 (1190)
+.+.++++.|.
T Consensus 68 lvewLkk~~P~ 78 (245)
T COG3967 68 LVEWLKKEYPN 78 (245)
T ss_pred HHHHHHhhCCc
Confidence 77777777553
No 405
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=67.22 E-value=21 Score=38.00 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=61.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCe-EEEEccCCCCCCCCccCcceEEECC-----CCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYE-VILINSNPATIMTDPGLADRTYITP-----MTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~i~p-----~~~~~v~~i~~~ 165 (1190)
..+|+|+|.|.+ |..+++.|-..|+. +.++|.+.-... .+...+++.. .-.+...+.+++
T Consensus 21 ~s~VlIiG~ggl-----------G~evak~La~~GVg~i~lvD~d~ve~s---nL~rqfl~~~~diG~~Ka~a~~~~L~~ 86 (197)
T cd01492 21 SARILLIGLKGL-----------GAEIAKNLVLSGIGSLTILDDRTVTEE---DLGAQFLIPAEDLGQNRAEASLERLRA 86 (197)
T ss_pred hCcEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEECCcccHh---hCCCCccccHHHcCchHHHHHHHHHHH
Confidence 469999999975 67899999999996 556776543221 2222222222 223456667777
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCC
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKT 228 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipv 228 (1190)
.+|+.-+-........+ ..+.+..+.+-+...+... .+....+.++++|+|.
T Consensus 87 lNp~v~i~~~~~~~~~~------~~~~~~~~dvVi~~~~~~~-----~~~~ln~~c~~~~ip~ 138 (197)
T cd01492 87 LNPRVKVSVDTDDISEK------PEEFFSQFDVVVATELSRA-----ELVKINELCRKLGVKF 138 (197)
T ss_pred HCCCCEEEEEecCcccc------HHHHHhCCCEEEECCCCHH-----HHHHHHHHHHHcCCCE
Confidence 88887664332211111 0223444555444332211 2233445677777664
No 406
>PRK09135 pteridine reductase; Provisional
Probab=67.12 E-value=24 Score=38.44 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=45.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-------C--ccCcceEEECCCCHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-------D--PGLADRTYITPMTPELVEQV 162 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-------~--~~~ad~~~i~p~~~~~v~~i 162 (1190)
.++|||+|++.. -|+.+++.|.+.|++|++++........ . ......+..+-.+.+.+.++
T Consensus 6 ~~~vlItGa~g~----------iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (249)
T PRK09135 6 AKVALITGGARR----------IGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPEL 75 (249)
T ss_pred CCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHH
Confidence 368999998753 3889999999999999999764211000 0 00111112333455666655
Q ss_pred HHH-----cCCCEEEecCC
Q 001014 163 LEK-----ERPDALLPTMG 176 (1190)
Q Consensus 163 ~~~-----~~~d~Vip~~~ 176 (1190)
++. .++|.|+-..+
T Consensus 76 ~~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 76 VAACVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 554 26898886654
No 407
>PRK08017 oxidoreductase; Provisional
Probab=67.09 E-value=14 Score=40.62 Aligned_cols=34 Identities=35% Similarity=0.622 Sum_probs=28.5
Q ss_pred CEEEEEcC-CccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~-G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
++|+|+|+ |.+ |..+++.|.+.|++|++++.++.
T Consensus 3 k~vlVtGasg~I-----------G~~la~~l~~~g~~v~~~~r~~~ 37 (256)
T PRK08017 3 KSVLITGCSSGI-----------GLEAALELKRRGYRVLAACRKPD 37 (256)
T ss_pred CEEEEECCCChH-----------HHHHHHHHHHCCCEEEEEeCCHH
Confidence 58999998 543 78999999999999999877654
No 408
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=66.67 E-value=29 Score=40.69 Aligned_cols=97 Identities=18% Similarity=0.309 Sum_probs=55.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCC-CCCCCCccCcceEE-EC--CC----CH-------
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNP-ATIMTDPGLADRTY-IT--PM----TP------- 156 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~-~~~~~~~~~ad~~~-i~--p~----~~------- 156 (1190)
++|++.|||. .=|-+-+..+++.|++.|+ +++.+.... ......+......+ +. ++ ..
T Consensus 1 ~~ivl~~gGT------GGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~ 74 (357)
T COG0707 1 KKIVLTAGGT------GGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPF 74 (357)
T ss_pred CeEEEEeCCC------ccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHH
Confidence 3677777773 3366889999999999999 466664322 11111122222222 21 11 11
Q ss_pred ------HHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeC
Q 001014 157 ------ELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIG 202 (1190)
Q Consensus 157 ------~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G 202 (1190)
-...+++++.+||+|+ ++||.......+ .....|+|++-
T Consensus 75 ~~~~~~~~a~~il~~~kPd~vi-g~Ggyvs~P~~~------Aa~~~~iPv~i 119 (357)
T COG0707 75 KLLKGVLQARKILKKLKPDVVI-GTGGYVSGPVGI------AAKLLGIPVII 119 (357)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ecCCccccHHHH------HHHhCCCCEEE
Confidence 1345577889999998 566655444433 12335677663
No 409
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=66.58 E-value=4.2 Score=48.00 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=70.0
Q ss_pred HHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccc-cCCCCCCCCcEEEEECC
Q 001014 573 DFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDF-ECESAPTQKKKVLILGG 651 (1190)
Q Consensus 573 ~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~-~~~~~~~~~~kVlIlG~ 651 (1190)
....|++.|+++..+-.+.+.....=.+.|.+-+|.-. ....-|..++- ......-..++|||||+
T Consensus 120 Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~-------------~VSi~saAv~lA~~~~~~L~~~~vlvIGA 186 (414)
T COG0373 120 AYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKG-------------AVSISSAAVELAKRIFGSLKDKKVLVIGA 186 (414)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCC-------------ccchHHHHHHHHHHHhcccccCeEEEEcc
Confidence 44568888998888887777666555666666554321 11111211211 01111236789999999
Q ss_pred CCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCc
Q 001014 652 GPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQ 729 (1190)
Q Consensus 652 G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~ 729 (1190)
|. + +.-+++.|.+.|+. ++++|.+.+.. .++++++-.....++++.+... ..|.||...+..
T Consensus 187 Ge--m---------~~lva~~L~~~g~~~i~IaNRT~erA---~~La~~~~~~~~~l~el~~~l~--~~DvVissTsa~ 249 (414)
T COG0373 187 GE--M---------GELVAKHLAEKGVKKITIANRTLERA---EELAKKLGAEAVALEELLEALA--EADVVISSTSAP 249 (414)
T ss_pred cH--H---------HHHHHHHHHhCCCCEEEEEcCCHHHH---HHHHHHhCCeeecHHHHHHhhh--hCCEEEEecCCC
Confidence 98 3 44559999999955 44555443321 1123332223344555555542 345566555544
No 410
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.52 E-value=11 Score=40.86 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----cCcceEE--ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-----GLADRTY--ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----~~ad~~~--i~p~~~~~v~~i~~ 164 (1190)
.++|||+|+.. +-|..+++.|.+.|++|++++.++....... .-....+ .+..+.+.+.++++
T Consensus 5 ~~~ilItGasg----------~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 5 GKTALVTGASR----------GIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CCEEEEECCCc----------HHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 46899999753 3388999999999999999987654211000 0011111 33345555555554
Q ss_pred H-----cCCCEEEecCC
Q 001014 165 K-----ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-----~~~d~Vip~~~ 176 (1190)
. ..+|+|+...+
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (246)
T PRK05653 75 AAVEAFGALDILVNNAG 91 (246)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 3 35799887665
No 411
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.47 E-value=13 Score=45.69 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
..++|+|+|+|.. +..+++.|++.|++|.+++.++
T Consensus 15 ~~~~v~viG~G~~-----------G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVS-----------GFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999984 5566999999999999998654
No 412
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=66.47 E-value=13 Score=43.69 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=47.8
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccC-Ccceee--cCCcHHHHHHHhhh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDT-SDRLYF--EPLTVEDVLNVIDL 716 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~-ad~~~~--~p~~~e~v~~i~~~ 716 (1190)
...++|||.|+|+ +|+ .+++.++.+|.+ +++++.+++....-... +|..+. .+...+.+.+....
T Consensus 175 ~~g~~VlV~G~g~--vG~---------~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 175 KRGDSVAVIGCGG--VGD---------AAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCEEEEECCCH--HHH---------HHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCC
Confidence 3568999999887 444 448888889996 88887765443211111 232221 11123455555544
Q ss_pred cCCCccccccCCchh
Q 001014 717 ERPEGIIVQFGGQTP 731 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~~~ 731 (1190)
.++|.|+-..|+...
T Consensus 244 ~g~d~vid~~g~~~~ 258 (358)
T TIGR03451 244 FGADVVIDAVGRPET 258 (358)
T ss_pred CCCCEEEECCCCHHH
Confidence 568999887776533
No 413
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.47 E-value=23 Score=43.44 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.++|+|+|+|. +|..+++.|++.|++|.+++..+
T Consensus 16 ~~~v~viG~G~-----------~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGV-----------SGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999995 47889999999999999998554
No 414
>PRK12939 short chain dehydrogenase; Provisional
Probab=66.44 E-value=22 Score=38.88 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccCcc-eEE-ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PGLAD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
.++|+|+|++.. -|..+++.|.+.|+++++++.++...... ....+ ..+ .+-.+.+.+.++++
T Consensus 7 ~~~vlItGa~g~----------iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 7 GKRALVTGAARG----------LGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCEEEEeCCCCh----------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 479999997532 27889999999999999997654311100 00011 122 22235566655554
Q ss_pred H-----cCCCEEEecCC
Q 001014 165 K-----ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-----~~~d~Vip~~~ 176 (1190)
. .++|+++-..+
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 77 AAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 3 36899987665
No 415
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=66.44 E-value=6.8 Score=51.14 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 88 KRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 88 ~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
+....+||+|||+||- |..++..|.+.||+|++++..
T Consensus 379 ~~~tgKKVaVVGaGPA-----------GLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPA-----------GFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHH-----------HHHHHHHHHhCCCeEEEEccc
Confidence 3356789999999973 889999999999999999864
No 416
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=66.35 E-value=19 Score=42.95 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=60.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccc--------c--C---------CCCC
Q 001014 580 RGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDF--------E--C---------ESAP 640 (1190)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~--------~--~---------~~~~ 640 (1190)
.-|+-.+.|+++|++...+|.+-.+ |..|..+.-+. | ..+|+--+- + . .-.+
T Consensus 47 r~ft~~e~A~~lgvs~~tlr~~~~~-g~~~~~~~~~~--g------rR~yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~ 117 (405)
T PRK13869 47 RKFTSGEAARLMKISDSTLRKMTLA-GEGPQPELASN--G------RRFYTLGQINEIRQMLAGSTRGRESIDFVPHRRG 117 (405)
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHc-CCCCCCccCCC--C------ceeecHHHHHHHHHHHHhhccccccccccCCCCC
Confidence 3689999999999999999988654 54444433221 1 223332110 0 0 0011
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS 691 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s 691 (1190)
.++-+|+.+.+.-.-.|+.. .+++.+..|.+.|++|.+||.+|....
T Consensus 118 ~~~~~vIav~n~KGGvGKTT----ta~nLA~~LA~~G~rVLlIDlDpQ~~l 164 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTT----TSAHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred CCCceEEEEEcCCCCCCHHH----HHHHHHHHHHhcCCceEEEcCCCCCCH
Confidence 12224544443221256643 688999999999999999999997543
No 417
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=66.31 E-value=22 Score=37.97 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=43.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccCCcceeecCC-----cHHHHHHHh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDTSDRLYFEPL-----TVEDVLNVI 714 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~ad~~~~~p~-----~~e~v~~i~ 714 (1190)
-...||+|+|.|+. +..+++.|-..|+. +.++|.+.-+.+ ++...+++.+. ..+.+.+.+
T Consensus 19 L~~s~VlIiG~ggl-----------G~evak~La~~GVg~i~lvD~d~ve~s---nL~rqfl~~~~diG~~Ka~a~~~~L 84 (197)
T cd01492 19 LRSARILLIGLKGL-----------GAEIAKNLVLSGIGSLTILDDRTVTEE---DLGAQFLIPAEDLGQNRAEASLERL 84 (197)
T ss_pred HHhCcEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEECCcccHh---hCCCCccccHHHcCchHHHHHHHHH
Confidence 35679999999994 56679999999997 446666533221 12222333221 255566667
Q ss_pred hhcCCCccc
Q 001014 715 DLERPEGII 723 (1190)
Q Consensus 715 ~~~~~d~Vi 723 (1190)
++.+|+.-+
T Consensus 85 ~~lNp~v~i 93 (197)
T cd01492 85 RALNPRVKV 93 (197)
T ss_pred HHHCCCCEE
Confidence 777777654
No 418
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=66.25 E-value=8.8 Score=46.71 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=30.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.++|+|||+|+ +|..+++.|++.|++|+++..++.
T Consensus 10 ~~~VaIIGAG~-----------aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGA-----------AGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcH-----------HHHHHHHHHHhcCCeEEEEecCCC
Confidence 46899999995 488999999999999999987654
No 419
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=66.24 E-value=14 Score=42.92 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=41.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCCCccCc-ceEEECCC--CHHHHHHHHHHcCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMTDPGLA-DRTYITPM--TPELVEQVLEKERP 168 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~~~~~a-d~~~i~p~--~~~~v~~i~~~~~~ 168 (1190)
|+|||+|+.. |-|..+++.|.+. |++|+.++............. -..+...+ +.+.+.++++ ++
T Consensus 2 ~~ilVtGatG----------fiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~ 69 (347)
T PRK11908 2 KKVLILGVNG----------FIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK--KC 69 (347)
T ss_pred cEEEEECCCc----------HHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHc--CC
Confidence 5899999842 4489999999886 799999975432110000111 12223233 3455556555 69
Q ss_pred CEEEec
Q 001014 169 DALLPT 174 (1190)
Q Consensus 169 d~Vip~ 174 (1190)
|.|+-.
T Consensus 70 d~ViH~ 75 (347)
T PRK11908 70 DVILPL 75 (347)
T ss_pred CEEEEC
Confidence 998843
No 420
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=66.23 E-value=9.4 Score=41.33 Aligned_cols=72 Identities=25% Similarity=0.315 Sum_probs=50.0
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEE-ECCCCHHHHHHHHHHcCCCEEE
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTY-ITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~-i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|||+|+.. |-|..+++.|.+.|++|+.+...+........ ..-..+ .+-.+.+.+.++++..++|.|+
T Consensus 1 IlI~GatG----------~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi 70 (236)
T PF01370_consen 1 ILITGATG----------FIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVI 70 (236)
T ss_dssp EEEETTTS----------HHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEE
T ss_pred EEEEccCC----------HHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEE
Confidence 79999764 55899999999999998877655543211000 011233 3334788999999998999998
Q ss_pred ecCC
Q 001014 173 PTMG 176 (1190)
Q Consensus 173 p~~~ 176 (1190)
-..+
T Consensus 71 ~~a~ 74 (236)
T PF01370_consen 71 HLAA 74 (236)
T ss_dssp EEBS
T ss_pred Eeec
Confidence 6655
No 421
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=66.23 E-value=12 Score=43.36 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=47.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccC-CcceeecCC--cHHHHHHHhhhc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDT-SDRLYFEPL--TVEDVLNVIDLE 717 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~-ad~~~~~p~--~~e~v~~i~~~~ 717 (1190)
..++|||+|+|. +|+ .+++.++.+|.+ +++++.+++.......+ ++.. +... +.+.+.++....
T Consensus 163 ~g~~vlV~G~G~--vG~---------~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 163 GRDTVLVVGAGP--VGL---------GALMLARALGAEDVIGVDPSPERLELAKALGADFV-INSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCEEEEECCCH--HHH---------HHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcCCcchHHHHHHHhCCC
Confidence 367999999887 444 458888999999 88887765432211001 1222 2111 144555555555
Q ss_pred CCCccccccCCchh
Q 001014 718 RPEGIIVQFGGQTP 731 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~ 731 (1190)
.+|.|+-..++...
T Consensus 231 ~~d~vid~~g~~~~ 244 (339)
T cd08239 231 GADVAIECSGNTAA 244 (339)
T ss_pred CCCEEEECCCCHHH
Confidence 78999877776644
No 422
>PRK08278 short chain dehydrogenase; Provisional
Probab=66.13 E-value=34 Score=38.29 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.++++|+|++.. -|..+++.|.+.|++|++++.+.
T Consensus 6 ~k~vlItGas~g----------IG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 6 GKTLFITGASRG----------IGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEeccc
Confidence 468999998642 27899999999999999997654
No 423
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=66.07 E-value=85 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=37.6
Q ss_pred cchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccC
Q 001014 662 FDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFG 727 (1190)
Q Consensus 662 fd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g 727 (1190)
+|.....++..++..||+|+.+-. ....+++.+.+.++++|.|..++-
T Consensus 16 H~lG~~iv~~~lr~~G~eVi~LG~------------------~vp~e~i~~~a~~~~~d~V~lS~~ 63 (137)
T PRK02261 16 HAVGNKILDRALTEAGFEVINLGV------------------MTSQEEFIDAAIETDADAILVSSL 63 (137)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCC------------------CCCHHHHHHHHHHcCCCEEEEcCc
Confidence 455667778889999999986642 234789999999999999887654
No 424
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=66.04 E-value=14 Score=40.87 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=29.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.++|||+|++.. -|..+++.|.+.|++|++++.+.
T Consensus 2 ~k~ilItG~~~~----------IG~~la~~l~~~g~~vi~~~r~~ 36 (259)
T PRK12384 2 NQVAVVIGGGQT----------LGAFLCHGLAEEGYRVAVADINS 36 (259)
T ss_pred CCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEECCH
Confidence 368999998753 27889999999999999998654
No 425
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=65.99 E-value=6 Score=45.12 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..+||+|+|.|.. |+.+++.|+++|.+|++++.++.......... ..+...+.+.+.+. +.|.
T Consensus 151 ~g~kvlViG~G~i-----------G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G----~~~~~~~~l~~~l~--~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRT-----------GMTLARTLKALGANVTVGARKSAHLARITEMG----LSPFHLSELAEEVG--KIDI 213 (296)
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC----CeeecHHHHHHHhC--CCCE
Confidence 4579999999964 88999999999999999987754211000000 11122334444443 6888
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+.+..
T Consensus 214 VI~t~p 219 (296)
T PRK08306 214 IFNTIP 219 (296)
T ss_pred EEECCC
Confidence 887653
No 426
>PLN02240 UDP-glucose 4-epimerase
Probab=65.97 E-value=25 Score=40.95 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-------C--ccCcc-eEE-ECCCCHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-------D--PGLAD-RTY-ITPMTPELVE 160 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-------~--~~~ad-~~~-i~p~~~~~v~ 160 (1190)
.++|||+|+.. +-|..+++.|.+.|++|++++........ . ..... ..+ .+-.+.+.+.
T Consensus 5 ~~~vlItGatG----------~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~ 74 (352)
T PLN02240 5 GRTILVTGGAG----------YIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALE 74 (352)
T ss_pred CCEEEEECCCC----------hHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHH
Confidence 36999999853 33889999999999999998643211000 0 00001 122 2334667777
Q ss_pred HHHHHcCCCEEEecC
Q 001014 161 QVLEKERPDALLPTM 175 (1190)
Q Consensus 161 ~i~~~~~~d~Vip~~ 175 (1190)
++++..++|.|+-..
T Consensus 75 ~~~~~~~~d~vih~a 89 (352)
T PLN02240 75 KVFASTRFDAVIHFA 89 (352)
T ss_pred HHHHhCCCCEEEEcc
Confidence 777777899988644
No 427
>PRK07023 short chain dehydrogenase; Provisional
Probab=65.92 E-value=25 Score=38.44 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.4
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
++|||+|++.. | |..+++.|.+.|++|++++.++.
T Consensus 2 ~~vlItGasgg-i---------G~~ia~~l~~~G~~v~~~~r~~~ 36 (243)
T PRK07023 2 VRAIVTGHSRG-L---------GAALAEQLLQPGIAVLGVARSRH 36 (243)
T ss_pred ceEEEecCCcc-h---------HHHHHHHHHhCCCEEEEEecCcc
Confidence 48999998643 2 78899999999999999876543
No 428
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=65.91 E-value=4.9 Score=44.49 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=28.9
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...++|+|+|+... +|+ .+++.|.+.|++|+++..+++.
T Consensus 15 ~~~~~ilItGasG~-iG~---------~l~~~L~~~g~~V~~~~R~~~~ 53 (251)
T PLN00141 15 VKTKTVFVAGATGR-TGK---------RIVEQLLAKGFAVKAGVRDVDK 53 (251)
T ss_pred ccCCeEEEECCCcH-HHH---------HHHHHHHhCCCEEEEEecCHHH
Confidence 34689999997553 555 4488888899999988766543
No 429
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.88 E-value=11 Score=47.25 Aligned_cols=37 Identities=24% Similarity=0.546 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
...++|+|+|+||. |..++..|++.|++|++++..+.
T Consensus 135 ~~g~~V~VIGaGpa-----------GL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPA-----------GLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCeEEEEecCCC
Confidence 35679999999975 78899999999999999986553
No 430
>PRK07074 short chain dehydrogenase; Provisional
Probab=65.79 E-value=13 Score=41.04 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-----CccCcceEEECCCCHHHHHHHHHH-
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-----DPGLADRTYITPMTPELVEQVLEK- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-----~~~~ad~~~i~p~~~~~v~~i~~~- 165 (1190)
.++++|+|++.. -|..+++.|.+.|++|++++.++..... ..........+-.+.+.+.+.+.+
T Consensus 2 ~k~ilItGat~~----------iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 2 KRTALVTGAAGG----------IGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CCEEEEECCcch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 368999998642 2788999999999999999876532100 000011112333456666555543
Q ss_pred ----cCCCEEEecCC
Q 001014 166 ----ERPDALLPTMG 176 (1190)
Q Consensus 166 ----~~~d~Vip~~~ 176 (1190)
.++|.++-..+
T Consensus 72 ~~~~~~~d~vi~~ag 86 (257)
T PRK07074 72 AAERGPVDVLVANAG 86 (257)
T ss_pred HHHcCCCCEEEECCC
Confidence 25899887665
No 431
>PRK07806 short chain dehydrogenase; Provisional
Probab=65.78 E-value=25 Score=38.39 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=44.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC--------CccCcceEEECCCCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT--------DPGLADRTYITPMTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~--------~~~~ad~~~i~p~~~~~v~~i~ 163 (1190)
.++|||+|+... -|..+++.|.+.|++|+++..+...... ..........+..+.+.+.+++
T Consensus 6 ~k~vlItGasgg----------iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 6 GKTALVTGSSRG----------IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALM 75 (248)
T ss_pred CcEEEEECCCCc----------HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 468999997532 2788999999999999988654321100 0000111123334666665555
Q ss_pred HH-----cCCCEEEecCC
Q 001014 164 EK-----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~-----~~~d~Vip~~~ 176 (1190)
++ .++|.++...+
T Consensus 76 ~~~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 76 DTAREEFGGLDALVLNAS 93 (248)
T ss_pred HHHHHhCCCCcEEEECCC
Confidence 43 25888876554
No 432
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=65.72 E-value=9.8 Score=45.27 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=47.3
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCc---------cccCCcceeecCCcHHHHH
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVST---------DYDTSDRLYFEPLTVEDVL 711 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~---------~~~~ad~~~~~p~~~e~v~ 711 (1190)
...++|||+|+.+. ||+ ++++.|.+.|++|+++..++..... ...-......+-.+.+.+.
T Consensus 58 ~~~~kVLVtGatG~-IG~---------~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 127 (390)
T PLN02657 58 PKDVTVLVVGATGY-IGK---------FVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLR 127 (390)
T ss_pred CCCCEEEEECCCcH-HHH---------HHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHH
Confidence 35678999998664 555 5599999999999999876543210 0001111222334567777
Q ss_pred HHhhhc--CCCcccccc
Q 001014 712 NVIDLE--RPEGIIVQF 726 (1190)
Q Consensus 712 ~i~~~~--~~d~Vi~~~ 726 (1190)
++++.. ++|.|+.+.
T Consensus 128 ~~~~~~~~~~D~Vi~~a 144 (390)
T PLN02657 128 KVLFSEGDPVDVVVSCL 144 (390)
T ss_pred HHHHHhCCCCcEEEECC
Confidence 777654 588877543
No 433
>PRK08264 short chain dehydrogenase; Validated
Probab=65.72 E-value=8.8 Score=41.79 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=45.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccCCccee---ecCCcHHHHHHHhhhc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDTSDRLY---FEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~ad~~~---~~p~~~e~v~~i~~~~ 717 (1190)
..++|+|+|+... +|+ .+++.|.+.|+ +|++++.++..... ...... .+-.+.+.+.++.+..
T Consensus 5 ~~~~vlItGgsg~-iG~---------~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (238)
T PRK08264 5 KGKVVLVTGANRG-IGR---------AFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAA 71 (238)
T ss_pred CCCEEEEECCCch-HHH---------HHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhc
Confidence 4578999998664 555 44889999999 99988877654321 111111 2233456666666544
Q ss_pred -CCCccccccC
Q 001014 718 -RPEGIIVQFG 727 (1190)
Q Consensus 718 -~~d~Vi~~~g 727 (1190)
.+|+||-..+
T Consensus 72 ~~id~vi~~ag 82 (238)
T PRK08264 72 SDVTILVNNAG 82 (238)
T ss_pred CCCCEEEECCC
Confidence 4677775544
No 434
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.67 E-value=16 Score=40.04 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=44.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCc--cCcceEEECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDP--GLADRTYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~--~~ad~~~i~p~~~~~v~~i~~~~~~ 168 (1190)
..+|+|+|.|.. |..++++|.+.|+ +.+++|.+.-...--. -++....+...-.+.+.+.+++.+|
T Consensus 11 ~~~VlVvG~GGv-----------Gs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 11 NAHVAVVGLGGV-----------GSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred CCCEEEECCCHH-----------HHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 458999999975 7789999999998 6777776543221000 0111111222334566677777777
Q ss_pred CEEEecCC
Q 001014 169 DALLPTMG 176 (1190)
Q Consensus 169 d~Vip~~~ 176 (1190)
+.-+-...
T Consensus 80 ~~~V~~~~ 87 (231)
T cd00755 80 ECEVDAVE 87 (231)
T ss_pred CcEEEEee
Confidence 76554443
No 435
>PRK12828 short chain dehydrogenase; Provisional
Probab=65.64 E-value=8.8 Score=41.61 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
..++|||+|+... ||+.+ ++.+.+.|+++++++.++..
T Consensus 6 ~~k~vlItGatg~-iG~~l---------a~~l~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 6 QGKVVAITGGFGG-LGRAT---------AAWLAARGARVALIGRGAAP 43 (239)
T ss_pred CCCEEEEECCCCc-HhHHH---------HHHHHHCCCeEEEEeCChHh
Confidence 4689999998764 66544 88888899999999887643
No 436
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=65.59 E-value=31 Score=38.17 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEE-----ECCCCHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTY-----ITPMTPELVEQVLE 164 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~-----i~p~~~~~v~~i~~ 164 (1190)
...+|+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+....+ +...-.+...+.++
T Consensus 31 ~~~~VliiG~Ggl-----------Gs~va~~La~~Gvg~i~lvD~D~ve~s---NL~Rq~l~~~~dvG~~Ka~~a~~~l~ 96 (245)
T PRK05690 31 KAARVLVVGLGGL-----------GCAASQYLAAAGVGTLTLVDFDTVSLS---NLQRQVLHDDATIGQPKVESARAALA 96 (245)
T ss_pred cCCeEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEcCCEECcc---hhhhhhcCChhhCCChHHHHHHHHHH
Confidence 3469999999976 7789999999998 5667765532211 1111111 12223345556666
Q ss_pred HcCCCEEEecC
Q 001014 165 KERPDALLPTM 175 (1190)
Q Consensus 165 ~~~~d~Vip~~ 175 (1190)
+.+++.-+-..
T Consensus 97 ~lnp~v~i~~~ 107 (245)
T PRK05690 97 RINPHIAIETI 107 (245)
T ss_pred HHCCCCEEEEE
Confidence 66776554333
No 437
>PRK08265 short chain dehydrogenase; Provisional
Probab=65.56 E-value=15 Score=40.81 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=46.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcce--EE-ECCCCHHHHHHHHHH--
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADR--TY-ITPMTPELVEQVLEK-- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~--~~-i~p~~~~~v~~i~~~-- 165 (1190)
.++++|+|+..- -|+.+++.|.+.|++|++++.++...... ...... .+ .+-.+.+.+.++++.
T Consensus 6 ~k~vlItGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 6 GKVAIVTGGATL----------IGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHH
Confidence 479999997542 27899999999999999998765321000 011111 12 333455555555543
Q ss_pred ---cCCCEEEecCC
Q 001014 166 ---ERPDALLPTMG 176 (1190)
Q Consensus 166 ---~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 76 ~~~g~id~lv~~ag 89 (261)
T PRK08265 76 ARFGRVDILVNLAC 89 (261)
T ss_pred HHhCCCCEEEECCC
Confidence 26898886554
No 438
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.53 E-value=21 Score=43.62 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC---CccCcceEEECCCCHHHHHHHHHHcC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT---DPGLADRTYITPMTPELVEQVLEKER 167 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~---~~~~ad~~~i~p~~~~~v~~i~~~~~ 167 (1190)
..++|+|+|-| -||..+++.|++.|++|++.|.++..... .....-.......+.+.+ ..
T Consensus 7 ~~~~v~v~G~G-----------~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~ 69 (468)
T PRK04690 7 EGRRVALWGWG-----------REGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRL------AA 69 (468)
T ss_pred CCCEEEEEccc-----------hhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHc------cC
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeC
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIG 202 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G 202 (1190)
+|.|+...+ ...+-.. -..+.+.|+++++
T Consensus 70 ~d~vV~Spg--I~~~~p~----~~~a~~~~i~i~~ 98 (468)
T PRK04690 70 FDVVVKSPG--ISPYRPE----ALAAAARGTPFIG 98 (468)
T ss_pred CCEEEECCC--CCCCCHH----HHHHHHcCCcEEE
No 439
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=65.49 E-value=26 Score=39.45 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=59.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHH--CCCeEEEE-ccCCCCCCCCccCcceEEE-CC-CCHHHHHHHHHHcC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVILI-NSNPATIMTDPGLADRTYI-TP-MTPELVEQVLEKER 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~--~G~~vi~v-~~~~~~~~~~~~~ad~~~i-~p-~~~~~v~~i~~~~~ 167 (1190)
.||+|||.|.+ |...++.+.+ .|++++.+ +.++... ...+...-. .. .+.+. ++. +
T Consensus 7 irIGIIG~G~I-----------G~~~a~~L~~~~~~~el~aV~dr~~~~a---~~~a~~~g~~~~~~~~ee---ll~--~ 67 (271)
T PRK13302 7 LRVAIAGLGAI-----------GKAIAQALDRGLPGLTLSAVAVRDPQRH---ADFIWGLRRPPPVVPLDQ---LAT--H 67 (271)
T ss_pred eEEEEECccHH-----------HHHHHHHHHhcCCCeEEEEEECCCHHHH---HHHHHhcCCCcccCCHHH---Hhc--C
Confidence 59999999965 6778888886 38888755 4444311 111111000 00 13333 333 6
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
+|+|+.+.........+. .++ +.|..++-.+..++. +-..+.+.+++.|.+
T Consensus 68 ~D~Vvi~tp~~~h~e~~~-----~aL-~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 68 ADIVVEAAPASVLRAIVE-----PVL-AAGKKAIVLSVGALL---RNEDLIDLARQNGGQ 118 (271)
T ss_pred CCEEEECCCcHHHHHHHH-----HHH-HcCCcEEEecchhHH---hHHHHHHHHHHcCCE
Confidence 899998876444333322 223 457776644443332 335666778888876
No 440
>PRK08267 short chain dehydrogenase; Provisional
Probab=65.37 E-value=12 Score=41.34 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=45.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-C--cc-eEE-ECCCCHHHHHHHHHH--
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-L--AD-RTY-ITPMTPELVEQVLEK-- 165 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~--ad-~~~-i~p~~~~~v~~i~~~-- 165 (1190)
|++||+|++.. -|..+++.|.+.|++|++++.++........ . .. ..+ .+-.+.+.+.++++.
T Consensus 2 k~vlItGasg~----------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASG----------IGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCch----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 68999998742 2788999999999999999876542110000 0 01 122 333455555554442
Q ss_pred ----cCCCEEEecCC
Q 001014 166 ----ERPDALLPTMG 176 (1190)
Q Consensus 166 ----~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 72 ~~~~~~id~vi~~ag 86 (260)
T PRK08267 72 AATGGRLDVLFNNAG 86 (260)
T ss_pred HHcCCCCCEEEECCC
Confidence 36799886654
No 441
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=65.34 E-value=1.2e+02 Score=37.37 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 901 SSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 901 ~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
++..+++.+++.++-+.+| -+..|||.+ .+|++|++-.=|
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai-~~g~L~iLQaRp 296 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTV-ESGKLWLLQTRS 296 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEE-ECCEEEEEEeec
Confidence 4677888888888887766 589999999 889999998766
No 442
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=65.31 E-value=37 Score=33.29 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=45.0
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC--C-------CHHHHHHHHH
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP--M-------TPELVEQVLE 164 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p--~-------~~~~v~~i~~ 164 (1190)
|||++|..+. .| ....++.|++.|++|.++..+...........-..+..+ . ..-.+.++++
T Consensus 1 KIl~i~~~~~------~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik 71 (139)
T PF13477_consen 1 KILLIGNTPS------TF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIK 71 (139)
T ss_pred CEEEEecCcH------HH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhc
Confidence 5888887642 12 568899999999999999875543111111111122112 1 1125667788
Q ss_pred HcCCCEEEecCC
Q 001014 165 KERPDALLPTMG 176 (1190)
Q Consensus 165 ~~~~d~Vip~~~ 176 (1190)
+++||.|+....
T Consensus 72 ~~~~DvIh~h~~ 83 (139)
T PF13477_consen 72 KEKPDVIHCHTP 83 (139)
T ss_pred cCCCCEEEEecC
Confidence 899999986543
No 443
>PRK06953 short chain dehydrogenase; Provisional
Probab=65.13 E-value=18 Score=38.92 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=44.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHH---HcCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLE---KERP 168 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~---~~~~ 168 (1190)
++++|+|+... | |+.+++.|.+.|++|++++.++.....-....-..+ .+-.+.+.+.+++. ..++
T Consensus 2 ~~vlvtG~sg~-i---------G~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (222)
T PRK06953 2 KTVLIVGASRG-I---------GREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEAL 71 (222)
T ss_pred ceEEEEcCCCc-h---------hHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCC
Confidence 58999997643 2 788999999999999999876432110000000122 22234555555443 2358
Q ss_pred CEEEecCC
Q 001014 169 DALLPTMG 176 (1190)
Q Consensus 169 d~Vip~~~ 176 (1190)
|+++...+
T Consensus 72 d~vi~~ag 79 (222)
T PRK06953 72 DAAVYVAG 79 (222)
T ss_pred CEEEECCC
Confidence 99987654
No 444
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=65.13 E-value=8.3 Score=43.23 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=60.8
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEEecCCCCCcCc-cccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIMMNSNPETVST-DYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~v~~~p~~~s~-~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
-||.|+|.|. +|+.+ ++.+.+. +.++..+-..+..... ....... .....++.++ ..++|.
T Consensus 2 ~rVgIiG~G~--iG~~~---------~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~----~~~~~d~~~l--~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGA--IGAAV---------LELLEHDPDLRVDWVIVPEHSIDAVRRALGEA----VRVVSSVDAL--PQRPDL 64 (265)
T ss_pred cEEEEECCCH--HHHHH---------HHHHhhCCCceEEEEEEcCCCHHHHhhhhccC----CeeeCCHHHh--ccCCCE
Confidence 4899999988 66644 7777664 5665544322111100 0000000 0111222233 467999
Q ss_pred cccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 722 IIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 722 Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
|+...+.......+..+- +.| ++++..++.++........+.+.+++.|..
T Consensus 65 Vve~t~~~~~~e~~~~aL----------~aG---k~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 65 VVECAGHAALKEHVVPIL----------KAG---IDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred EEECCCHHHHHHHHHHHH----------HcC---CCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 887776655545555555 677 777765666554333345566777777764
No 445
>PLN02827 Alcohol dehydrogenase-like
Probab=65.09 E-value=26 Score=41.38 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=43.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCc--cccCCcceeecCC----c-HHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVST--DYDTSDRLYFEPL----T-VEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~--~~~~ad~~~~~p~----~-~e~v~~i 713 (1190)
..++|||.|+|+ +|+ .+++.++.+|.. +++++.+++.... .+. +|.. +.+. + .+.+.++
T Consensus 193 ~g~~VlV~G~G~--vG~---------~~iqlak~~G~~~vi~~~~~~~~~~~a~~lG-a~~~-i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 193 KGSSVVIFGLGT--VGL---------SVAQGAKLRGASQIIGVDINPEKAEKAKTFG-VTDF-INPNDLSEPIQQVIKRM 259 (378)
T ss_pred CCCEEEEECCCH--HHH---------HHHHHHHHcCCCeEEEECCCHHHHHHHHHcC-CcEE-EcccccchHHHHHHHHH
Confidence 468999999988 555 448888899985 6666655433211 111 2222 2221 1 1233333
Q ss_pred hhhcCCCccccccCCch
Q 001014 714 IDLERPEGIIVQFGGQT 730 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~~ 730 (1190)
... .+|.|+-..|...
T Consensus 260 ~~~-g~d~vid~~G~~~ 275 (378)
T PLN02827 260 TGG-GADYSFECVGDTG 275 (378)
T ss_pred hCC-CCCEEEECCCChH
Confidence 332 6888888777653
No 446
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=65.08 E-value=2.1e+02 Score=30.98 Aligned_cols=140 Identities=22% Similarity=0.220 Sum_probs=81.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEcc-CCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINS-NPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~-~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
|.+.++.||-. +.-++..+-++|++|..+-. -|.. .|.....-.+.+.+...++..++..+
T Consensus 2 k~~aL~SGGKD-----------S~~Al~~a~~~G~eV~~Ll~~~p~~-------~dS~m~H~~n~~~~~~~Ae~~gi~l~ 63 (223)
T COG2102 2 KVIALYSGGKD-----------SFYALYLALEEGHEVVYLLTVKPEN-------GDSYMFHTPNLELAELQAEAMGIPLV 63 (223)
T ss_pred cEEEEEecCcH-----------HHHHHHHHHHcCCeeEEEEEEecCC-------CCeeeeeccchHHHHHHHHhcCCceE
Confidence 46777777754 23566666778999886532 2221 12222333455666666676777777
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCC-CCeeecCCHHHHHHHHHHcCCC
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKT-PPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipv-p~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
.....|+.-.. .-.| .++++..++..+ ..-++..-..|.++..+|+++|+.+ .|-|-. +.+++.+..-..| |
T Consensus 64 ~~~~~g~~e~e-ve~L--~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~-d~~ell~e~~~~G-f 136 (223)
T COG2102 64 TFDTSGEEERE-VEEL--KEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAPLWGR-DPEELLEEMVEAG-F 136 (223)
T ss_pred EEecCccchhh-HHHH--HHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeecccCC-CHHHHHHHHHHcC-C
Confidence 65555421111 1112 235666664444 4557777778999999999999986 333433 4555555555677 7
Q ss_pred cEEEecC
Q 001014 251 PLIIRPA 257 (1190)
Q Consensus 251 PvVVKP~ 257 (1190)
-++|=.+
T Consensus 137 ~~~Iv~V 143 (223)
T COG2102 137 EAIIVAV 143 (223)
T ss_pred eEEEEEE
Confidence 7654443
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=64.96 E-value=17 Score=39.72 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccCCcceee-----cCCcHHHHHHHhh
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDTSDRLYF-----EPLTVEDVLNVID 715 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~ad~~~~-----~p~~~e~v~~i~~ 715 (1190)
.+.+|+|+|.|+. +..+++.|.+.|+ +..++|.+.-..+. +.-.++. .....+.+.+.++
T Consensus 10 ~~~~VlVvG~GGv-----------Gs~va~~Lar~GVg~i~LvD~D~V~~sN---lnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 10 RNAHVAVVGLGGV-----------GSWAAEALARSGVGKLTLIDFDVVCVSN---LNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred hCCCEEEECCCHH-----------HHHHHHHHHHcCCCEEEEECCCEECchh---hcchhCcChhhCCCcHHHHHHHHHH
Confidence 5678999999994 5566999999998 56667765322221 1111111 1123566666666
Q ss_pred hcCCCcccc
Q 001014 716 LERPEGIIV 724 (1190)
Q Consensus 716 ~~~~d~Vi~ 724 (1190)
+.+|+.-+.
T Consensus 76 ~inP~~~V~ 84 (231)
T cd00755 76 DINPECEVD 84 (231)
T ss_pred HHCCCcEEE
Confidence 666665443
No 448
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=64.96 E-value=6 Score=37.32 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
..+++|||+|+|.. +..-++.|.+.|.++.++.+..
T Consensus 5 l~~~~vlVvGgG~v-----------a~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPV-----------AARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHH-----------HHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEECCch
Confidence 46789999999995 7777899999999999998764
No 449
>PRK07060 short chain dehydrogenase; Provisional
Probab=64.91 E-value=14 Score=40.26 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceEE-ECCCCHHHHHHHHHHc-C
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRTY-ITPMTPELVEQVLEKE-R 167 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~-i~p~~~~~v~~i~~~~-~ 167 (1190)
..++++|+|++.. -|..+++.|.+.|++|++++.++...... .......+ .+..+.+.+.+.++.. +
T Consensus 8 ~~~~~lItGa~g~----------iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (245)
T PRK07060 8 SGKSVLVTGASSG----------IGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGA 77 (245)
T ss_pred CCCEEEEeCCcch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCC
Confidence 3479999998532 27899999999999999998654211000 00011222 3334556666666653 5
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|+|+...+
T Consensus 78 ~d~vi~~ag 86 (245)
T PRK07060 78 FDGLVNCAG 86 (245)
T ss_pred CCEEEECCC
Confidence 799986654
No 450
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=64.80 E-value=19 Score=41.95 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=44.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEE-EccCCCCCCC--CccC---cce-EE-ECCCCHHHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVIL-INSNPATIMT--DPGL---ADR-TY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~-v~~~~~~~~~--~~~~---ad~-~~-i~p~~~~~v~~i~~ 164 (1190)
++|||+|+.. +-|..+++.|.+.|+++++ ++........ .... ... .+ .+-.+.+.+.++++
T Consensus 2 ~~vlVtGatG----------fIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 71 (355)
T PRK10217 2 RKILITGGAG----------FIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFT 71 (355)
T ss_pred cEEEEEcCCc----------HHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHh
Confidence 5899999854 3388999999999988654 4432211000 0000 111 12 22336677888888
Q ss_pred HcCCCEEEecCC
Q 001014 165 KERPDALLPTMG 176 (1190)
Q Consensus 165 ~~~~d~Vip~~~ 176 (1190)
..++|.|+-..+
T Consensus 72 ~~~~D~Vih~A~ 83 (355)
T PRK10217 72 EHQPDCVMHLAA 83 (355)
T ss_pred hcCCCEEEECCc
Confidence 778999886543
No 451
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=64.78 E-value=6.7 Score=44.47 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..++|+|+|.|.+ |+.+++.|+.+|.+|++++.++.......... ..+...+.+.+.++ +.|.
T Consensus 150 ~gk~v~IiG~G~i-----------G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g----~~~~~~~~l~~~l~--~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRT-----------GMTIARTFSALGARVFVGARSSADLARITEMG----LIPFPLNKLEEKVA--EIDI 212 (287)
T ss_pred CCCEEEEEcChHH-----------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC----CeeecHHHHHHHhc--cCCE
Confidence 4579999999964 78999999999999999987654211000000 11223344444444 6898
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+.+..
T Consensus 213 Vint~P 218 (287)
T TIGR02853 213 VINTIP 218 (287)
T ss_pred EEECCC
Confidence 887653
No 452
>PRK07326 short chain dehydrogenase; Provisional
Probab=64.75 E-value=16 Score=39.60 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=45.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC---cc-eEE-ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL---AD-RTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~---ad-~~~-i~p~~~~~v~~i~~~ 165 (1190)
.++|+|+|++.. -|..+++.|.+.|++|++++.++...... ..+ .. ..+ .+-.+.+.+.+.+++
T Consensus 6 ~~~ilItGatg~----------iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 6 GKVALITGGSKG----------IGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCEEEEECCCCc----------HHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 468999997542 27889999999999999998765321000 000 11 122 233455666555553
Q ss_pred -----cCCCEEEecCC
Q 001014 166 -----ERPDALLPTMG 176 (1190)
Q Consensus 166 -----~~~d~Vip~~~ 176 (1190)
.++|+|+...+
T Consensus 76 ~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 76 IVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHcCCCCEEEECCC
Confidence 26898886554
No 453
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=64.75 E-value=60 Score=34.66 Aligned_cols=94 Identities=21% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccC---CCCCCC-----------------------Cc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSN---PATIMT-----------------------DP 143 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~---~~~~~~-----------------------~~ 143 (1190)
..++|+|+|.|.+ |..++..|.+.|+ +++++|.+ ...... .+
T Consensus 20 ~~~~V~IvG~Ggl-----------Gs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 20 EQATVAICGLGGL-----------GSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred hCCcEEEECcCHH-----------HHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Q ss_pred cCcceEEECCCCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 144 GLADRTYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 144 ~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
...-..+...++.+.+.++++ ++|.|+-+.+....-.... +..+..++.+++
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l~----~~~~~~~~~~~i 140 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFK--DADIVCEAFDNAEAKAMLV----NAVLEKYKDKYL 140 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHHH----HHHHHHcCCCcE
No 454
>PRK06180 short chain dehydrogenase; Provisional
Probab=64.62 E-value=14 Score=41.37 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcce--EE-ECCCCHHHHHHHHHH--
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADR--TY-ITPMTPELVEQVLEK-- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~--~~-i~p~~~~~v~~i~~~-- 165 (1190)
+++|||+|++.. -|+.+++.|.+.|++|++++.++...... ....+. .+ .+..+.+.+.++++.
T Consensus 4 ~~~vlVtGasgg----------iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 4 MKTWLITGVSSG----------FGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCEEEEecCCCh----------HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 468999998642 27899999999999999998765421100 000111 11 233355555555543
Q ss_pred ---cCCCEEEecCC
Q 001014 166 ---ERPDALLPTMG 176 (1190)
Q Consensus 166 ---~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 74 ~~~~~~d~vv~~ag 87 (277)
T PRK06180 74 ATFGPIDVLVNNAG 87 (277)
T ss_pred HHhCCCCEEEECCC
Confidence 25788886544
No 455
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=64.56 E-value=8.2 Score=47.79 Aligned_cols=34 Identities=41% Similarity=0.706 Sum_probs=26.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
|||+|||+|+ ||..+++.|.+.|++++++..+++
T Consensus 2 krVaVIGaG~-----------sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGP-----------SGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SH-----------HHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccH-----------HHHHHHHHHHHCCCCCeEEecCCC
Confidence 6999999995 589999999999999999986654
No 456
>PRK07024 short chain dehydrogenase; Provisional
Probab=64.54 E-value=12 Score=41.42 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=45.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccCcce-EE-ECCCCHHHHHHHHHH-
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGLADR-TY-ITPMTPELVEQVLEK- 165 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~-~~-i~p~~~~~v~~i~~~- 165 (1190)
++|+|+|+... -|..+++.|.+.|++|++++.++...... ....+. .+ .+-.+.+.+.+.+++
T Consensus 3 ~~vlItGas~g----------IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSG----------IGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 58999997642 27899999999999999998764321100 000011 12 233355666555443
Q ss_pred ----cCCCEEEecCC
Q 001014 166 ----ERPDALLPTMG 176 (1190)
Q Consensus 166 ----~~~d~Vip~~~ 176 (1190)
..+|.++...+
T Consensus 73 ~~~~g~id~lv~~ag 87 (257)
T PRK07024 73 IAAHGLPDVVIANAG 87 (257)
T ss_pred HHhCCCCCEEEECCC
Confidence 24798886654
No 457
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.53 E-value=16 Score=41.76 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=82.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEEEC----CCCH---HHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTYIT----PMTP---ELVEQVLE 164 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~i~----p~~~---~~v~~i~~ 164 (1190)
++|.|||+|.. |..++..|.+.|++|.+...++.....-.. -.+..|+. |.+. .++.+.++
T Consensus 2 ~kI~ViGaGsw-----------GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 2 MKIAVIGAGSW-----------GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD 70 (329)
T ss_pred ceEEEEcCChH-----------HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh
Confidence 58999999965 789999999999999999876532110000 01122221 2111 23333333
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIA 244 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~ 244 (1190)
+.|.|+...-.+.-.+....+. ..+ ..+.+++ .-.+-++.- ...++.+.+++. +|..+...++-+.-+.+.+
T Consensus 71 --~ad~iv~avPs~~~r~v~~~l~--~~l-~~~~~iv-~~sKGie~~-t~~l~seii~e~-l~~~~~~vLSGPs~A~EVa 142 (329)
T COG0240 71 --GADIIVIAVPSQALREVLRQLK--PLL-LKDAIIV-SATKGLEPE-TGRLLSEIIEEE-LPDNPIAVLSGPSFAKEVA 142 (329)
T ss_pred --cCCEEEEECChHHHHHHHHHHh--hhc-cCCCeEE-EEeccccCC-CcchHHHHHHHH-cCCCeEEEEECccHHHHHh
Confidence 4787776665444333333221 111 1223333 122223322 455666666665 4443466677777777765
Q ss_pred HHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh
Q 001014 245 NEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA 283 (1190)
Q Consensus 245 ~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~ 283 (1190)
+. .|. .+.+..+..++.+.++..+.
T Consensus 143 ~g---~pt-----------a~~vas~d~~~a~~v~~~f~ 167 (329)
T COG0240 143 QG---LPT-----------AVVVASNDQEAAEKVQALFS 167 (329)
T ss_pred cC---CCc-----------EEEEecCCHHHHHHHHHHhC
Confidence 43 343 34455555555555555543
No 458
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=64.47 E-value=11 Score=44.61 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=44.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..+|+|+|+|.. |..+++.|+++|.+|++++.++...... ..+....+..-.+.+.+.+.+. +.|.
T Consensus 167 ~~~VlViGaG~v-----------G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~--~aDv 233 (370)
T TIGR00518 167 PGDVTIIGGGVV-----------GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVK--RADL 233 (370)
T ss_pred CceEEEEcCCHH-----------HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHc--cCCE
Confidence 468999999964 7899999999999999998765321100 0111111111223455555554 6788
Q ss_pred EEecC
Q 001014 171 LLPTM 175 (1190)
Q Consensus 171 Vip~~ 175 (1190)
|+.+.
T Consensus 234 VI~a~ 238 (370)
T TIGR00518 234 LIGAV 238 (370)
T ss_pred EEEcc
Confidence 88654
No 459
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.45 E-value=16 Score=45.00 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..++|+|+|.|. ||..+++.|+..|++|++.|.++
T Consensus 11 ~~~~v~V~G~G~-----------sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 11 PGAPVLVAGAGV-----------TGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCCeEEEEcCCH-----------HHHHHHHHHHHCCCEEEEEcCCH
Confidence 457999999995 48899999999999999988654
No 460
>PRK09186 flagellin modification protein A; Provisional
Probab=64.28 E-value=8.8 Score=42.28 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=30.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
..|+|+|+|++.. ||+.+ ++.|.+.|+++++++.+++.
T Consensus 3 ~~k~vlItGas~g-iG~~~---------a~~l~~~g~~v~~~~r~~~~ 40 (256)
T PRK09186 3 KGKTILITGAGGL-IGSAL---------VKAILEAGGIVIAADIDKEA 40 (256)
T ss_pred CCCEEEEECCCch-HHHHH---------HHHHHHCCCEEEEEecChHH
Confidence 4589999998764 66644 99999999999999876543
No 461
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=64.12 E-value=12 Score=43.33 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=48.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCe-EEEEccCCCCCCCCccC-cceEEECCCC--HHHHHHHHHHcC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYE-VILINSNPATIMTDPGL-ADRTYITPMT--PELVEQVLEKER 167 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~-vi~v~~~~~~~~~~~~~-ad~~~i~p~~--~~~v~~i~~~~~ 167 (1190)
..+|||+|+|.+ |..++..++.+|.+ |++++.++........+ ++. ++...+ .+.+.++....+
T Consensus 164 g~~vlV~G~G~v-----------G~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~-~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 164 RDTVLVVGAGPV-----------GLGALMLARALGAEDVIGVDPSPERLELAKALGADF-VINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE-EEcCCcchHHHHHHHhCCCC
Confidence 579999998864 67788899999999 88887654321110111 222 232222 233333333347
Q ss_pred CCEEEecCCChhHHHHH
Q 001014 168 PDALLPTMGGQTALNLA 184 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~ 184 (1190)
+|.++-+.++......+
T Consensus 232 ~d~vid~~g~~~~~~~~ 248 (339)
T cd08239 232 ADVAIECSGNTAARRLA 248 (339)
T ss_pred CCEEEECCCCHHHHHHH
Confidence 99999888866554433
No 462
>PRK09186 flagellin modification protein A; Provisional
Probab=64.07 E-value=22 Score=39.01 Aligned_cols=35 Identities=37% Similarity=0.458 Sum_probs=28.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++
T Consensus 4 ~k~vlItGas~g----------iG~~~a~~l~~~g~~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGL----------IGSALVKAILEAGGIVIAADIDK 38 (256)
T ss_pred CCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEecCh
Confidence 468999998642 27889999999999999997654
No 463
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=63.94 E-value=12 Score=49.25 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
..++|+|||+|| +|..++..|++.|++|++++..+.
T Consensus 538 tgKkVaIIGgGP-----------AGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGP-----------AGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCH-----------HHHHHHHHHHHcCCeEEEEecccc
Confidence 467999999996 488999999999999999986654
No 464
>PLN02778 3,5-epimerase/4-reductase
Probab=63.84 E-value=11 Score=43.06 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=37.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
...+||||+||.+. ||+ ++++.|.+.|++|+....+ . .+.+.+...++..++|
T Consensus 7 ~~~~kiLVtG~tGf-iG~---------~l~~~L~~~g~~V~~~~~~---------~--------~~~~~v~~~l~~~~~D 59 (298)
T PLN02778 7 SATLKFLIYGKTGW-IGG---------LLGKLCQEQGIDFHYGSGR---------L--------ENRASLEADIDAVKPT 59 (298)
T ss_pred CCCCeEEEECCCCH-HHH---------HHHHHHHhCCCEEEEecCc---------c--------CCHHHHHHHHHhcCCC
Confidence 45578999998775 666 4499999999998643211 1 1234455555556788
Q ss_pred ccc
Q 001014 721 GII 723 (1190)
Q Consensus 721 ~Vi 723 (1190)
.||
T Consensus 60 ~Vi 62 (298)
T PLN02778 60 HVF 62 (298)
T ss_pred EEE
Confidence 776
No 465
>PRK06398 aldose dehydrogenase; Validated
Probab=63.80 E-value=12 Score=41.50 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
..|++||+|+... ||. .+++.+.+.|+++++++.+..
T Consensus 5 ~gk~vlItGas~g-IG~---------~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 5 KDKVAIVTGGSQG-IGK---------AVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCEEEEECCCch-HHH---------HHHHHHHHCCCeEEEEeCCcc
Confidence 4589999998763 555 449999999999999887643
No 466
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=63.78 E-value=43 Score=39.29 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC-cCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET-VSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~-~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
..++|+|.|+|+. +..+++.++.+|.++++++.+++. ......+.-...+.+.+.+.+.+... .+|
T Consensus 183 ~g~~VlV~G~G~v-----------G~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~--~~D 249 (360)
T PLN02586 183 PGKHLGVAGLGGL-----------GHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIG--TMD 249 (360)
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcC--CCC
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
.|+-..+....+.-+..+- +.| +++-.+|.......+ ....-+..+.-+..-........+++.+
T Consensus 250 ~vid~~g~~~~~~~~~~~l----------~~~-G~iv~vG~~~~~~~~----~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 314 (360)
T PLN02586 250 YIIDTVSAVHALGPLLGLL----------KVN-GKLITLGLPEKPLEL----PIFPLVLGRKLVGGSDIGGIKETQEMLD 314 (360)
T ss_pred EEEECCCCHHHHHHHHHHh----------cCC-cEEEEeCCCCCCCcc----CHHHHHhCCeEEEEcCcCCHHHHHHHHH
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEE
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLID 850 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliE 850 (1190)
+.++-.++..+ -....+|+.++++..........+++.
T Consensus 315 li~~g~i~~~~------------~~~~l~~~~~A~~~~~~~~~~gkvvi~ 352 (360)
T PLN02586 315 FCAKHNITADI------------ELIRMDEINTAMERLAKSDVRYRFVID 352 (360)
T ss_pred HHHhCCCCCcE------------EEEeHHHHHHHHHHHHcCCCcEEEEEE
No 467
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=63.75 E-value=11 Score=49.69 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=32.4
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
...|+|+|||||+- +..++..|+++|++|.+++..+.
T Consensus 537 ~tgKkVaIIGgGPA-----------GLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPA-----------GLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHH-----------HHHHHHHHHHcCCeEEEEecccc
Confidence 56789999999993 88889999999999999987654
No 468
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.74 E-value=12 Score=45.85 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
...||+|+|+|++ |..++..++.+|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~i-----------GL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVA-----------GLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHCCCEEEEEeCCHH
Confidence 3569999999986 78999999999999999988764
No 469
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.72 E-value=9.4 Score=39.09 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNS 685 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~ 685 (1190)
-..++|+|+|||.. +..-++.|.+.|.++.++++
T Consensus 11 l~~~~vlVvGGG~v-----------a~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVIIGGGKI-----------AYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred cCCCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEEcC
Confidence 46789999999985 66678899999999999953
No 470
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=63.71 E-value=11 Score=39.77 Aligned_cols=31 Identities=32% Similarity=0.698 Sum_probs=27.0
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
+|+|||+|+ +|..++..|++.|+++++++.+
T Consensus 1 ~vvIIGgG~-----------aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGP-----------AGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSH-----------HHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHH-----------HHHHHHHHHhcCCCeEEEEecc
Confidence 699999995 5889999999999999999543
No 471
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.57 E-value=20 Score=39.00 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=45.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC---C-ccCcceE--E-ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT---D-PGLADRT--Y-ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~---~-~~~ad~~--~-i~p~~~~~v~~i~~ 164 (1190)
.++++|+|+... -|..+++.|.+.|++|++++.++..... . ....... + .+-.+.+.+.++++
T Consensus 7 ~~~vlVtG~sg~----------iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGAGRG----------IGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 468999997642 2788999999999999999876431100 0 0001112 2 22235566665555
Q ss_pred H-----cCCCEEEecCC
Q 001014 165 K-----ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-----~~~d~Vip~~~ 176 (1190)
. .++|+++...+
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 77 QLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHcCCccEEEEcCc
Confidence 3 26899886654
No 472
>PRK07236 hypothetical protein; Provisional
Probab=63.53 E-value=9.4 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=29.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
++|+|+|+|+ +|..++..|++.|++|++++..+
T Consensus 7 ~~ViIVGaG~-----------aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 7 PRAVVIGGSL-----------GGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CeEEEECCCH-----------HHHHHHHHHHhCCCCEEEEecCC
Confidence 5899999995 48899999999999999998654
No 473
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=63.51 E-value=11 Score=43.82 Aligned_cols=143 Identities=13% Similarity=0.197 Sum_probs=87.3
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC--CeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG--YETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G--~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
.-||.|+|.|.. + ...-+.++++.+ .+++ +++.+++.... .+.+ |..+...+++.++.+..++
T Consensus 3 ~irvgiiG~G~~--~--------~~~~~~~~~~~~~~~~~vav~d~~~~~a~~---~a~~-~~~~~~~~~~~~ll~~~~i 68 (342)
T COG0673 3 MIRVGIIGAGGI--A--------GKAHLPALAALGGGLELVAVVDRDPERAEA---FAEE-FGIAKAYTDLEELLADPDI 68 (342)
T ss_pred eeEEEEEcccHH--H--------HHHhHHHHHhCCCceEEEEEecCCHHHHHH---HHHH-cCCCcccCCHHHHhcCCCC
Confidence 468999998852 1 233466777766 3544 44666654211 1111 1112335556677777789
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc---eeecCHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG---GIAKSEA 796 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~---~~~~s~~ 796 (1190)
|+|++......-..++...- +.| .+++.-.|=+....+-+ .+.++.++.|+..--. +......
T Consensus 69 D~V~Iatp~~~H~e~~~~AL----------~aG---khVl~EKPla~t~~ea~-~l~~~a~~~~~~l~v~~~~Rf~p~~~ 134 (342)
T COG0673 69 DAVYIATPNALHAELALAAL----------EAG---KHVLCEKPLALTLEEAE-ELVELARKAGVKLMVGFNRRFDPAVQ 134 (342)
T ss_pred CEEEEcCCChhhHHHHHHHH----------hcC---CEEEEcCCCCCCHHHHH-HHHHHHHHcCCceeeehhhhcCHHHH
Confidence 99998888776666776665 788 78877666555544444 6667778878776322 2333455
Q ss_pred HHHHHHH--HhCCcEEEec
Q 001014 797 DALAIAK--EIGYPVVVRP 813 (1190)
Q Consensus 797 e~~~~~~--~igyPvvvKP 813 (1190)
.+.+.++ .+|.+..++-
T Consensus 135 ~~k~li~~g~lG~v~~~~~ 153 (342)
T COG0673 135 ALKELIDSGALGEVVSVQA 153 (342)
T ss_pred HHHHHHhcCCcCceEEEEE
Confidence 5666655 4777777773
No 474
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=63.50 E-value=3.2 Score=43.58 Aligned_cols=34 Identities=38% Similarity=0.801 Sum_probs=26.0
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
||.|+|+|. +|+++ +..+...|++|.++|.+++.
T Consensus 1 ~V~ViGaG~--mG~~i---------A~~~a~~G~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGT--MGRGI---------AALFARAGYEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SH--HHHHH---------HHHHHHTTSEEEEE-SSHHH
T ss_pred CEEEEcCCH--HHHHH---------HHHHHhCCCcEEEEECChHH
Confidence 699999998 66655 77777789999999987654
No 475
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.46 E-value=11 Score=47.93 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
..++|+|||+|+. |..++..|++.|++|++++..+.
T Consensus 309 ~~kkVaIIG~Gpa-----------Gl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPA-----------GLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHH-----------HHHHHHHHHHcCCcEEEEeCCCC
Confidence 4689999999964 78899999999999999986654
No 476
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=63.42 E-value=12 Score=41.85 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=28.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.++++|+|++.. -|+.+++.|.+.|++|++++.++
T Consensus 10 ~k~vlVtGas~g----------iG~~ia~~l~~~G~~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGV----------LGGAMAKELARAGAKVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999998642 27889999999999999998764
No 477
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=63.38 E-value=7.5 Score=40.78 Aligned_cols=33 Identities=33% Similarity=0.700 Sum_probs=26.9
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
||.|+|+|.. |++++..+...|++|++++.++.
T Consensus 1 ~V~ViGaG~m-----------G~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTM-----------GRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHH-----------HHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHH-----------HHHHHHHHHhCCCcEEEEECChH
Confidence 6999999964 78899999999999999987654
No 478
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.36 E-value=14 Score=45.01 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
...++|+|+|.|. ++..+++.|++ |+++++.|.++.
T Consensus 4 ~~~~~v~v~G~G~-----------sG~a~~~~L~~-g~~v~v~D~~~~ 39 (454)
T PRK01368 4 HTKQKIGVFGLGK-----------TGISVYEELQN-KYDVIVYDDLKA 39 (454)
T ss_pred CCCCEEEEEeecH-----------HHHHHHHHHhC-CCEEEEECCCCC
Confidence 3568999999887 36777999985 999999996544
No 479
>PRK07062 short chain dehydrogenase; Provisional
Probab=63.33 E-value=20 Score=39.70 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
..++++|+|++.. -|..+++.|.+.|++|++++.++.
T Consensus 7 ~~k~~lItGas~g----------iG~~ia~~l~~~G~~V~~~~r~~~ 43 (265)
T PRK07062 7 EGRVAVVTGGSSG----------IGLATVELLLEAGASVAICGRDEE 43 (265)
T ss_pred CCCEEEEeCCCch----------HHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4578999998742 278899999999999999987653
No 480
>PRK06182 short chain dehydrogenase; Validated
Probab=63.28 E-value=6.5 Score=43.99 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=28.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.++|+|+|++.. ||+.+ ++.+.+.|++|++++.+++
T Consensus 3 ~k~vlItGasgg-iG~~l---------a~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 3 KKVALVTGASSG-IGKAT---------ARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCEEEEECCCCh-HHHHH---------HHHHHHCCCEEEEEeCCHH
Confidence 578999998664 66644 8888899999999887754
No 481
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=63.26 E-value=9.8 Score=40.14 Aligned_cols=32 Identities=28% Similarity=0.702 Sum_probs=27.7
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
+|+|+|||+ ++..++..|++.|+++++++.++
T Consensus 1 ~vvIIGgG~-----------aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGP-----------AGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSH-----------HHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHH-----------HHHHHHHHHhcCCCeEEEEeccc
Confidence 699999999 48888999999999999996544
No 482
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=63.08 E-value=37 Score=39.52 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=28.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
+||+|+++|.- +.| +-...+++.|++.|++|.++..+.
T Consensus 2 ~~i~i~~~g~g----G~~--~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTG----GHV--FPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcch----Hhh--hHHHHHHHHHHhCCCEEEEEECCC
Confidence 58999987742 233 235578999999999999997644
No 483
>PLN02572 UDP-sulfoquinovose synthase
Probab=62.97 E-value=13 Score=45.09 Aligned_cols=35 Identities=34% Similarity=0.672 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNS 685 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~ 685 (1190)
.+.++|||+||.+. ||+ ++++.|.+.|++|++++.
T Consensus 45 ~~~k~VLVTGatGf-IGs---------~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGGDGY-CGW---------ATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccCCEEEEECCCcH-HHH---------HHHHHHHHCCCeEEEEec
Confidence 45689999998775 555 559999999999999874
No 484
>PHA02591 hypothetical protein; Provisional
Probab=62.89 E-value=12 Score=32.73 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.3
Q ss_pred HHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Q 001014 575 YEVKRRGFSDKQIAFATKSTEKEVREKRL 603 (1190)
Q Consensus 575 ~~~k~~g~~~~~~~~~~~~~~~~~~~~~~ 603 (1190)
.+.-+.|||-.+||.++|++...|+++-.
T Consensus 53 ~eL~eqGlSqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 53 HELARKGFTVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 34567899999999999999999998754
No 485
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=62.84 E-value=9.8 Score=45.35 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=30.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
+++|+|+|||+ .|..++.+|.+.|++|.+++..+.
T Consensus 2 ~~dVvVIGGGl-----------AGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGL-----------AGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCH-----------HHHHHHHHHHhCCCcEEEEEccCc
Confidence 35899999995 488899999999999999986654
No 486
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.78 E-value=14 Score=40.16 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEE-ccCCCCCCCC----ccCcceE--E-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILI-NSNPATIMTD----PGLADRT--Y-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v-~~~~~~~~~~----~~~ad~~--~-i~p~~~~~v~~i 162 (1190)
++++|||+|+.. .-|..+++.|.+.|++++++ +.++...... ....... + .+..+.+.+.++
T Consensus 4 ~~~~ilI~Gasg----------~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (247)
T PRK05565 4 MGKVAIVTGASG----------GIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENL 73 (247)
T ss_pred CCCEEEEeCCCc----------HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 346899999753 12788999999999999998 6654321000 0001111 2 233355666555
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
++.. ++|+|+...+
T Consensus 74 ~~~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 74 VEQIVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 5432 6899886654
No 487
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=62.77 E-value=13 Score=41.09 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccC------cceEEECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGL------ADRTYITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~------ad~~~i~p~~~~~v~~i~ 163 (1190)
..|+|||+|+... -|..+++.|.+.|++|++++.++..... .... ......+-.+.+.+.+++
T Consensus 9 ~~k~vlItGa~g~----------iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 9 TGRRALVTGSSQG----------IGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCCEEEEECCcch----------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHH
Confidence 3579999998642 2789999999999999998766431100 0000 111112334566666665
Q ss_pred HH-----cCCCEEEecCC
Q 001014 164 EK-----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~-----~~~d~Vip~~~ 176 (1190)
+. .++|+++...+
T Consensus 79 ~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 53 25888886554
No 488
>PRK06523 short chain dehydrogenase; Provisional
Probab=62.74 E-value=14 Score=40.84 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=29.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
...++|||.|++.. ||+.+ ++.+.+.|+++++++.++.
T Consensus 7 ~~~k~vlItGas~g-IG~~i---------a~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 7 LAGKRALVTGGTKG-IGAAT---------VARLLEAGARVVTTARSRP 44 (260)
T ss_pred CCCCEEEEECCCCc-hhHHH---------HHHHHHCCCEEEEEeCChh
Confidence 34689999998764 66544 9999999999999987643
No 489
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.61 E-value=9.7 Score=46.80 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
..++|+|+|.|.. +..+++.|+..|+++++.|.++.
T Consensus 11 ~~~~v~V~G~G~s-----------G~aa~~~L~~~G~~v~~~D~~~~ 46 (488)
T PRK03369 11 PGAPVLVAGAGVT-----------GRAVLAALTRFGARPTVCDDDPD 46 (488)
T ss_pred CCCeEEEEcCCHH-----------HHHHHHHHHHCCCEEEEEcCCHH
Confidence 4579999999983 56668899999999999886654
No 490
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.59 E-value=15 Score=40.85 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc----Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG----LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~----~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..+++||+|++.. -|..+++.|.+.|++|++++.++...... .. ... ..+ .+-.+.+.+.+++
T Consensus 9 ~~~~vlItGasgg----------IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 9 DDQVAVVTGAGRG----------LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3579999998753 27889999999999999998764311000 00 001 112 3334555555554
Q ss_pred HH-----cCCCEEEecCC
Q 001014 164 EK-----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~-----~~~d~Vip~~~ 176 (1190)
+. .++|+|+-..+
T Consensus 79 ~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 79 GQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 43 26899886554
No 491
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=62.56 E-value=79 Score=38.53 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHHHHHHCCCeEEEEccCCCCCCCCccCc--c-eEEECC------C---CHHHHHHHHHHcCCCEEEecCC
Q 001014 115 GTQACKALKEEGYEVILINSNPATIMTDPGLA--D-RTYITP------M---TPELVEQVLEKERPDALLPTMG 176 (1190)
Q Consensus 115 g~~~~~al~~~G~~vi~v~~~~~~~~~~~~~a--d-~~~i~p------~---~~~~v~~i~~~~~~d~Vip~~~ 176 (1190)
-..+++.|++.|++|.++.+++.......... . ..+..| . ....+.+++++.++|+|+....
T Consensus 80 ~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~ 153 (465)
T PLN02871 80 FQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSP 153 (465)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCC
Confidence 56888999999999999977654211100000 0 000000 0 1125677888899999987554
No 492
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.55 E-value=16 Score=40.24 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc----cC-cc-eEE-ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP----GL-AD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~----~~-ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
.++|+|+|++.. | |..+++.|.+.|++|++++.++....... .. .+ ..+ .+-.+.+.+.++++
T Consensus 7 ~k~ilItGas~~-i---------G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 7 GKVALVTGGAAG-I---------GRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCEEEEeCCCch-H---------HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 479999998643 2 78899999999999999987653210000 00 01 122 23334555555544
Q ss_pred H-----cCCCEEEecCC
Q 001014 165 K-----ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-----~~~d~Vip~~~ 176 (1190)
. .++|+++...+
T Consensus 77 ~~~~~~g~id~li~~ag 93 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 3 26799886654
No 493
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=62.53 E-value=30 Score=40.83 Aligned_cols=35 Identities=29% Similarity=0.610 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~ 136 (1190)
...+|+|+|.|.+ |..+++.|.+.|+ +++++|.+.
T Consensus 40 ~~~~VliiG~Ggl-----------G~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGL-----------GCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEeCCE
Confidence 4469999999976 7789999999998 777777653
No 494
>PRK06753 hypothetical protein; Provisional
Probab=62.42 E-value=8.2 Score=45.42 Aligned_cols=34 Identities=41% Similarity=0.583 Sum_probs=29.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
++|+|+|+|+ +|..++.+|++.|++|.++..++.
T Consensus 1 ~~V~IvGgG~-----------aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGI-----------GGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCH-----------HHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999996 388999999999999999986654
No 495
>PRK08223 hypothetical protein; Validated
Probab=62.41 E-value=53 Score=37.12 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCC---------------------------Cc
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMT---------------------------DP 143 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~---------------------------~~ 143 (1190)
..+|||+|.|.+ |..++..|.+.|+ ++.++|.+.-...- .+
T Consensus 27 ~s~VlIvG~GGL-----------Gs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP 95 (287)
T PRK08223 27 NSRVAIAGLGGV-----------GGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP 95 (287)
T ss_pred cCCEEEECCCHH-----------HHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC
Q ss_pred cCcceEEECCCCHHHHHHHHHHcCCCEEEecCCCh-hHHHHHHHHHHhhHHHHcCCcEe
Q 001014 144 GLADRTYITPMTPELVEQVLEKERPDALLPTMGGQ-TALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 144 ~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g~-~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
...-..+-..++.+.+.++++ ++|.|+-+.+.. ...-..+ ++.+.++|+|++
T Consensus 96 ~v~V~~~~~~l~~~n~~~ll~--~~DlVvD~~D~~~~~~r~~l----n~~c~~~~iP~V 148 (287)
T PRK08223 96 ELEIRAFPEGIGKENADAFLD--GVDVYVDGLDFFEFDARRLV----FAACQQRGIPAL 148 (287)
T ss_pred CCEEEEEecccCccCHHHHHh--CCCEEEECCCCCcHHHHHHH----HHHHHHcCCCEE
No 496
>PRK06988 putative formyltransferase; Provisional
Probab=62.38 E-value=13 Score=42.62 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=29.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI 139 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~ 139 (1190)
+||+++|.+.. |..++++|.+.|+++++|-++++.+
T Consensus 3 mkIvf~Gs~~~-----------a~~~L~~L~~~~~~i~~Vvt~~d~~ 38 (312)
T PRK06988 3 PRAVVFAYHNV-----------GVRCLQVLLARGVDVALVVTHEDNP 38 (312)
T ss_pred cEEEEEeCcHH-----------HHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 59999999964 6788999999999999887776543
No 497
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=62.37 E-value=12 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
..|++||+|++.. ||+.+ ++.+.+.|+++++++.++
T Consensus 7 ~~k~vlItGas~~-iG~~l---------a~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 7 SGKTVWVTGAAQG-IGYAV---------ALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCCEEEEeCCCch-HHHHH---------HHHHHHCCCEEEEEecch
Confidence 4689999998774 65544 888999999999998776
No 498
>PRK05868 hypothetical protein; Validated
Probab=62.35 E-value=8.6 Score=45.41 Aligned_cols=35 Identities=29% Similarity=0.585 Sum_probs=29.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
|++|+|+|+|+- |..++..|++.|++|.+++..+.
T Consensus 1 ~~~V~IvGgG~a-----------Gl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVA-----------GTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHH-----------HHHHHHHHHhCCCCEEEEcCCCC
Confidence 358999999963 88899999999999999987654
No 499
>PRK08309 short chain dehydrogenase; Provisional
Probab=62.26 E-value=37 Score=35.48 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=25.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|+++|+|+..+ +..+++.|.+.|++|++++.++
T Consensus 1 m~vlVtGGtG~-----------gg~la~~L~~~G~~V~v~~R~~ 33 (177)
T PRK08309 1 MHALVIGGTGM-----------LKRVSLWLCEKGFHVSVIARRE 33 (177)
T ss_pred CEEEEECcCHH-----------HHHHHHHHHHCcCEEEEEECCH
Confidence 37999997632 3458999999999999987654
No 500
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=62.23 E-value=56 Score=34.81 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=42.5
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccCCcceeecC-------CcHHHHHH
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDTSDRLYFEP-------LTVEDVLN 712 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~ad~~~~~p-------~~~e~v~~ 712 (1190)
-.+.+|+|+|.|.. +..+++.|-..|+. +.++|.+.-..+ ++...+++.+ ...+.+.+
T Consensus 17 L~~s~VlviG~ggl-----------Gsevak~L~~~GVg~i~lvD~d~ve~s---nl~rq~~~~~~~~~iG~~Ka~~~~~ 82 (198)
T cd01485 17 LRSAKVLIIGAGAL-----------GAEIAKNLVLAGIDSITIVDHRLVSTE---DLGSNFFLDAEVSNSGMNRAAASYE 82 (198)
T ss_pred HhhCcEEEECCCHH-----------HHHHHHHHHHcCCCEEEEEECCcCChh---cCcccEecccchhhcCchHHHHHHH
Confidence 45679999999984 55669999999988 556776533222 1222223322 12455566
Q ss_pred HhhhcCCCccc
Q 001014 713 VIDLERPEGII 723 (1190)
Q Consensus 713 i~~~~~~d~Vi 723 (1190)
.+++.+|+.-+
T Consensus 83 ~L~~lNp~v~i 93 (198)
T cd01485 83 FLQELNPNVKL 93 (198)
T ss_pred HHHHHCCCCEE
Confidence 66666776544
Done!