Query 001014
Match_columns 1190
No_of_seqs 962 out of 6344
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9x_A Carbamoyl phosphate syn 100.0 1E-181 4E-186 1769.4 117.8 1065 86-1172 1-1070(1073)
2 1a9x_A Carbamoyl phosphate syn 100.0 2.4E-48 8.2E-53 509.3 42.6 390 641-1037 5-405 (1073)
3 3ouz_A Biotin carboxylase; str 100.0 6.8E-45 2.3E-49 437.3 43.3 393 91-517 5-432 (446)
4 3q2o_A Phosphoribosylaminoimid 100.0 1.4E-45 4.7E-50 435.4 35.5 357 641-1036 12-378 (389)
5 3jrx_A Acetyl-COA carboxylase 100.0 1.2E-44 4E-49 439.6 37.6 395 90-517 54-541 (587)
6 3glk_A Acetyl-COA carboxylase 100.0 1.7E-44 5.7E-49 437.8 35.8 396 89-517 37-525 (540)
7 3u9t_A MCC alpha, methylcroton 100.0 7.9E-45 2.7E-49 451.7 30.3 399 84-517 20-457 (675)
8 4e4t_A Phosphoribosylaminoimid 100.0 1E-42 3.5E-47 412.6 33.2 354 641-1035 33-412 (419)
9 3q2o_A Phosphoribosylaminoimid 100.0 6E-42 2E-46 404.3 39.1 354 91-486 13-375 (389)
10 1ulz_A Pyruvate carboxylase N- 100.0 1.6E-41 5.3E-46 409.0 43.2 394 92-517 2-429 (451)
11 2vpq_A Acetyl-COA carboxylase; 100.0 2.3E-41 7.8E-46 407.5 43.7 393 92-517 1-430 (451)
12 3n6r_A Propionyl-COA carboxyla 100.0 1.9E-43 6.5E-48 439.8 23.6 398 91-517 1-450 (681)
13 2dzd_A Pyruvate carboxylase; b 100.0 5.4E-41 1.9E-45 405.2 43.2 381 91-497 5-429 (461)
14 4e4t_A Phosphoribosylaminoimid 100.0 1.7E-41 5.9E-46 402.1 35.4 360 91-488 34-412 (419)
15 2w70_A Biotin carboxylase; lig 100.0 1.2E-40 4.2E-45 401.0 42.4 393 92-517 2-429 (449)
16 3va7_A KLLA0E08119P; carboxyla 100.0 1.1E-41 3.8E-46 443.0 34.4 396 90-517 29-457 (1236)
17 3k5i_A Phosphoribosyl-aminoimi 100.0 8E-41 2.7E-45 395.3 36.9 352 642-1035 23-396 (403)
18 3k5i_A Phosphoribosyl-aminoimi 100.0 1.5E-40 5.1E-45 392.9 37.0 358 92-488 24-396 (403)
19 3hbl_A Pyruvate carboxylase; T 100.0 3.2E-41 1.1E-45 438.5 33.6 393 91-517 3-439 (1150)
20 3orq_A N5-carboxyaminoimidazol 100.0 1.8E-40 6.1E-45 389.3 34.0 357 91-487 11-373 (377)
21 3ouz_A Biotin carboxylase; str 100.0 5.7E-40 1.9E-44 394.5 37.3 364 642-1035 5-410 (446)
22 3eth_A Phosphoribosylaminoimid 100.0 7.2E-41 2.5E-45 386.0 27.9 331 643-1036 1-338 (355)
23 4dim_A Phosphoribosylglycinami 100.0 3.2E-39 1.1E-43 383.3 41.5 371 92-488 7-396 (403)
24 3orq_A N5-carboxyaminoimidazol 100.0 4.7E-40 1.6E-44 385.7 31.4 351 641-1032 10-371 (377)
25 1w96_A ACC, acetyl-coenzyme A 100.0 7.9E-39 2.7E-43 393.3 41.6 393 91-517 46-539 (554)
26 3jrx_A Acetyl-COA carboxylase 100.0 3.5E-39 1.2E-43 391.5 35.8 326 642-994 55-450 (587)
27 3glk_A Acetyl-COA carboxylase 100.0 4.6E-39 1.6E-43 390.1 35.5 308 642-976 39-396 (540)
28 4ffl_A PYLC; amino acid, biosy 100.0 6.9E-39 2.4E-43 374.8 34.5 340 92-488 1-353 (363)
29 3vot_A L-amino acid ligase, BL 100.0 1.2E-37 4.1E-42 372.1 45.9 371 91-488 4-409 (425)
30 3eth_A Phosphoribosylaminoimid 100.0 2.1E-39 7E-44 373.8 29.3 333 92-488 1-337 (355)
31 3ax6_A Phosphoribosylaminoimid 100.0 4.8E-38 1.6E-42 370.0 38.6 348 93-488 2-366 (380)
32 2qf7_A Pyruvate carboxylase pr 100.0 1.1E-38 3.7E-43 415.9 35.9 395 91-517 13-457 (1165)
33 3aw8_A PURK, phosphoribosylami 100.0 1.3E-38 4.6E-43 373.2 32.8 347 645-1036 1-359 (369)
34 3aw8_A PURK, phosphoribosylami 100.0 3.5E-38 1.2E-42 369.7 35.4 352 94-488 1-358 (369)
35 1kjq_A GART 2, phosphoribosylg 100.0 5E-38 1.7E-42 371.5 36.4 360 641-1035 9-385 (391)
36 1ulz_A Pyruvate carboxylase N- 100.0 5.9E-38 2E-42 377.8 36.6 365 643-1036 2-408 (451)
37 2dzd_A Pyruvate carboxylase; b 100.0 9E-38 3.1E-42 377.1 37.7 367 642-1036 5-420 (461)
38 1kjq_A GART 2, phosphoribosylg 100.0 4.2E-37 1.4E-41 363.6 41.5 360 91-488 10-385 (391)
39 2vpq_A Acetyl-COA carboxylase; 100.0 1.1E-37 3.6E-42 375.5 36.6 364 644-1036 2-409 (451)
40 3u9t_A MCC alpha, methylcroton 100.0 1.3E-38 4.5E-43 395.9 26.7 365 642-1035 27-435 (675)
41 3ax6_A Phosphoribosylaminoimid 100.0 3.2E-37 1.1E-41 363.1 36.0 343 644-1036 2-367 (380)
42 2w70_A Biotin carboxylase; lig 100.0 2.4E-37 8.4E-42 372.2 35.8 364 643-1036 2-408 (449)
43 2dwc_A PH0318, 433AA long hypo 100.0 4.1E-37 1.4E-41 368.4 37.3 370 91-494 18-416 (433)
44 2dwc_A PH0318, 433AA long hypo 100.0 2.5E-37 8.5E-42 370.3 33.7 360 642-1036 18-410 (433)
45 4dim_A Phosphoribosylglycinami 100.0 9.9E-37 3.4E-41 361.8 37.3 363 642-1036 6-397 (403)
46 3n6r_A Propionyl-COA carboxyla 100.0 2.6E-38 8.9E-43 393.6 22.1 323 643-994 2-340 (681)
47 3lp8_A Phosphoribosylamine-gly 100.0 3E-36 1E-40 359.9 38.6 375 91-493 20-430 (442)
48 3mjf_A Phosphoribosylamine--gl 100.0 2.1E-36 7.3E-41 360.3 36.2 373 92-493 3-415 (431)
49 4ffl_A PYLC; amino acid, biosy 100.0 5.2E-37 1.8E-41 358.9 30.3 329 643-1035 1-353 (363)
50 3vot_A L-amino acid ligase, BL 100.0 3.2E-36 1.1E-40 359.8 37.7 362 641-1035 3-409 (425)
51 1vkz_A Phosphoribosylamine--gl 100.0 1.6E-36 5.4E-41 360.4 32.5 361 92-494 15-404 (412)
52 3hbl_A Pyruvate carboxylase; T 100.0 8.6E-37 3E-41 397.0 31.2 366 642-1035 3-417 (1150)
53 3va7_A KLLA0E08119P; carboxyla 100.0 2E-36 6.8E-41 393.8 29.8 367 642-1036 30-436 (1236)
54 1vkz_A Phosphoribosylamine--gl 100.0 3.8E-36 1.3E-40 357.1 29.7 360 642-1051 14-411 (412)
55 2ip4_A PURD, phosphoribosylami 100.0 3.3E-35 1.1E-39 350.1 37.1 372 93-494 1-401 (417)
56 2ip4_A PURD, phosphoribosylami 100.0 3.1E-35 1E-39 350.4 36.7 369 645-1053 2-410 (417)
57 2yrx_A Phosphoribosylglycinami 100.0 4.3E-35 1.5E-39 352.4 37.5 378 642-1054 20-437 (451)
58 2z04_A Phosphoribosylaminoimid 100.0 1.7E-36 5.9E-41 354.8 24.2 352 92-494 1-360 (365)
59 2yrx_A Phosphoribosylglycinami 100.0 8.6E-35 2.9E-39 349.8 38.1 373 92-493 21-426 (451)
60 3mjf_A Phosphoribosylamine--gl 100.0 3.3E-35 1.1E-39 350.1 33.8 381 642-1053 2-425 (431)
61 2yw2_A Phosphoribosylamine--gl 100.0 7.3E-35 2.5E-39 348.0 36.6 372 93-494 1-408 (424)
62 1w96_A ACC, acetyl-coenzyme A 100.0 5.5E-35 1.9E-39 359.2 35.9 309 642-975 46-402 (554)
63 4fu0_A D-alanine--D-alanine li 100.0 2.3E-36 7.7E-41 351.8 22.3 305 92-412 3-343 (357)
64 3lp8_A Phosphoribosylamine-gly 100.0 2.6E-34 9E-39 343.2 39.7 376 642-1053 20-440 (442)
65 2qk4_A Trifunctional purine bi 100.0 4.2E-35 1.4E-39 352.7 32.6 374 92-494 24-437 (452)
66 2qk4_A Trifunctional purine bi 100.0 5.9E-35 2E-39 351.4 32.9 377 641-1052 22-445 (452)
67 2z04_A Phosphoribosylaminoimid 100.0 1.8E-35 6.2E-40 346.2 26.1 341 643-1036 1-354 (365)
68 2yw2_A Phosphoribosylamine--gl 100.0 2.6E-34 8.8E-39 343.3 34.3 371 645-1053 2-417 (424)
69 2qf7_A Pyruvate carboxylase pr 100.0 5.1E-35 1.8E-39 381.4 30.0 367 642-1035 13-435 (1165)
70 2xcl_A Phosphoribosylamine--gl 100.0 5.2E-34 1.8E-38 340.4 35.3 373 93-494 1-406 (422)
71 4eg0_A D-alanine--D-alanine li 100.0 2.8E-34 9.5E-39 329.2 29.6 286 91-413 12-311 (317)
72 2xcl_A Phosphoribosylamine--gl 100.0 7.6E-34 2.6E-38 339.0 32.3 374 645-1053 2-415 (422)
73 1ehi_A LMDDL2, D-alanine:D-lac 100.0 9.8E-34 3.4E-38 331.8 32.5 297 93-411 4-346 (377)
74 1e4e_A Vancomycin/teicoplanin 100.0 7.9E-35 2.7E-39 337.4 22.7 301 92-413 3-337 (343)
75 4fu0_A D-alanine--D-alanine li 100.0 1.4E-34 4.7E-39 336.8 24.5 304 642-968 2-344 (357)
76 2i87_A D-alanine-D-alanine lig 100.0 1.6E-34 5.5E-39 337.6 22.2 304 92-412 3-337 (364)
77 3tqt_A D-alanine--D-alanine li 100.0 2.8E-34 9.5E-39 334.1 24.0 303 92-412 4-347 (372)
78 3k3p_A D-alanine--D-alanine li 100.0 9.5E-34 3.3E-38 330.6 25.8 295 92-412 37-367 (383)
79 3e5n_A D-alanine-D-alanine lig 100.0 8.9E-34 3E-38 332.1 24.9 305 92-412 22-365 (386)
80 3i12_A D-alanine-D-alanine lig 100.0 5.5E-33 1.9E-37 324.0 29.5 305 92-412 3-346 (364)
81 3vmm_A Alanine-anticapsin liga 100.0 2.6E-32 8.8E-37 327.7 35.5 290 143-448 70-396 (474)
82 2fb9_A D-alanine:D-alanine lig 100.0 4.1E-33 1.4E-37 319.8 26.7 293 93-412 4-316 (322)
83 3lwb_A D-alanine--D-alanine li 100.0 7.7E-33 2.6E-37 322.9 27.8 305 91-412 9-361 (373)
84 3se7_A VANA; alpha-beta struct 100.0 5.5E-34 1.9E-38 330.5 17.8 302 92-412 3-336 (346)
85 2pn1_A Carbamoylphosphate synt 100.0 2.7E-32 9.3E-37 314.9 31.8 287 93-420 5-301 (331)
86 1ehi_A LMDDL2, D-alanine:D-lac 100.0 6E-32 2E-36 316.7 30.6 297 643-968 3-348 (377)
87 2pn1_A Carbamoylphosphate synt 100.0 4.2E-32 1.4E-36 313.3 28.5 287 642-975 3-301 (331)
88 1e4e_A Vancomycin/teicoplanin 100.0 7.5E-33 2.6E-37 320.8 21.5 299 643-968 3-337 (343)
89 1iow_A DD-ligase, DDLB, D-ALA\ 100.0 8.1E-32 2.8E-36 307.2 29.7 279 92-413 2-302 (306)
90 2i87_A D-alanine-D-alanine lig 100.0 2.9E-32 1E-36 318.4 25.9 301 643-968 3-338 (364)
91 2pvp_A D-alanine-D-alanine lig 100.0 1.1E-32 3.9E-37 320.5 21.5 293 93-418 21-349 (367)
92 3r5x_A D-alanine--D-alanine li 100.0 8.4E-32 2.9E-36 307.3 26.5 278 93-412 4-294 (307)
93 4eg0_A D-alanine--D-alanine li 100.0 4.4E-31 1.5E-35 302.6 27.7 287 640-968 10-311 (317)
94 3vmm_A Alanine-anticapsin liga 100.0 1.4E-30 4.6E-35 312.7 29.0 278 677-975 52-364 (474)
95 3tqt_A D-alanine--D-alanine li 100.0 2.5E-30 8.5E-35 300.8 25.1 303 642-968 3-348 (372)
96 3se7_A VANA; alpha-beta struct 100.0 6.8E-31 2.3E-35 304.6 19.4 302 642-968 2-337 (346)
97 3k3p_A D-alanine--D-alanine li 100.0 9.6E-30 3.3E-34 296.8 28.5 298 642-968 36-368 (383)
98 1iow_A DD-ligase, DDLB, D-ALA\ 100.0 1.7E-29 5.8E-34 288.0 28.6 278 643-969 2-303 (306)
99 2pvp_A D-alanine-D-alanine lig 100.0 5E-30 1.7E-34 298.3 24.4 299 642-974 19-350 (367)
100 3lwb_A D-alanine--D-alanine li 100.0 1.3E-29 4.3E-34 295.8 25.0 306 640-968 7-362 (373)
101 3e5n_A D-alanine-D-alanine lig 100.0 1.3E-29 4.4E-34 296.8 24.9 303 642-968 21-366 (386)
102 3i12_A D-alanine-D-alanine lig 100.0 9.2E-29 3.1E-33 288.3 29.6 302 643-968 3-347 (364)
103 2fb9_A D-alanine:D-alanine lig 100.0 3.9E-29 1.3E-33 286.7 23.6 292 643-968 3-317 (322)
104 3r5x_A D-alanine--D-alanine li 100.0 7.5E-29 2.6E-33 282.9 22.1 278 642-968 2-295 (307)
105 2yvq_A Carbamoyl-phosphate syn 100.0 6.8E-30 2.3E-34 254.4 9.4 136 1017-1154 1-142 (143)
106 1uc8_A LYSX, lysine biosynthes 99.9 9.9E-27 3.4E-31 261.4 25.2 271 95-416 2-278 (280)
107 1uc8_A LYSX, lysine biosynthes 99.9 5.7E-27 1.9E-31 263.4 20.5 270 646-971 2-278 (280)
108 2r85_A PURP protein PF1517; AT 99.9 9.1E-26 3.1E-30 260.5 26.1 263 93-394 3-292 (334)
109 2r7k_A 5-formaminoimidazole-4- 99.9 1.1E-25 3.7E-30 259.1 25.9 278 643-962 18-330 (361)
110 2r85_A PURP protein PF1517; AT 99.9 1.1E-24 3.8E-29 251.4 29.1 263 644-949 3-292 (334)
111 2r7k_A 5-formaminoimidazole-4- 99.9 3.3E-25 1.1E-29 255.2 24.3 271 92-396 18-321 (361)
112 2pbz_A Hypothetical protein; N 99.9 3.7E-25 1.3E-29 249.6 12.2 251 645-948 4-272 (320)
113 2pbz_A Hypothetical protein; N 99.9 3.1E-24 1.1E-28 242.1 9.8 253 93-393 3-272 (320)
114 3df7_A Putative ATP-grAsp supe 99.9 3.1E-22 1.1E-26 227.1 23.1 208 158-412 62-271 (305)
115 1b93_A Protein (methylglyoxal 99.9 1.1E-23 3.8E-28 206.9 6.8 119 1037-1155 7-131 (152)
116 1vmd_A MGS, methylglyoxal synt 99.9 1.5E-23 5.2E-28 209.1 6.6 134 1037-1172 23-164 (178)
117 3df7_A Putative ATP-grAsp supe 99.9 5.8E-22 2E-26 224.9 19.2 209 707-967 60-271 (305)
118 1gsa_A Glutathione synthetase; 99.9 2.2E-21 7.6E-26 221.7 21.5 295 93-415 2-311 (316)
119 2xw6_A MGS, methylglyoxal synt 99.9 1.3E-22 4.6E-27 195.2 8.7 114 1043-1156 5-124 (134)
120 1gsa_A Glutathione synthetase; 99.8 2.3E-20 8E-25 213.1 18.2 290 644-970 2-311 (316)
121 1z2n_X Inositol 1,3,4-trisphos 99.8 2.8E-19 9.7E-24 205.2 18.2 241 93-393 12-302 (324)
122 1z2n_X Inositol 1,3,4-trisphos 99.8 3.3E-19 1.1E-23 204.7 17.2 243 644-948 12-302 (324)
123 3ln7_A Glutathione biosynthesi 99.8 3.1E-18 1.1E-22 213.2 16.0 247 704-970 432-754 (757)
124 3ln7_A Glutathione biosynthesi 99.8 2.2E-18 7.4E-23 214.6 13.3 239 155-414 434-753 (757)
125 3ln6_A Glutathione biosynthesi 99.7 1.9E-17 6.4E-22 206.9 20.0 195 205-413 476-746 (750)
126 3ln6_A Glutathione biosynthesi 99.7 7.8E-17 2.7E-21 201.4 20.6 199 762-969 475-747 (750)
127 2q7d_A Inositol-tetrakisphosph 99.7 3.2E-16 1.1E-20 179.7 23.2 233 115-394 35-317 (346)
128 1wr2_A Hypothetical protein PH 99.7 2.9E-17 9.9E-22 179.4 9.7 172 768-946 18-218 (238)
129 2q7d_A Inositol-tetrakisphosph 99.7 1.5E-15 5E-20 174.2 21.2 234 666-948 35-314 (346)
130 2p0a_A Synapsin-3, synapsin II 99.6 8E-15 2.8E-19 165.8 21.4 220 167-413 85-320 (344)
131 1wr2_A Hypothetical protein PH 99.6 3.3E-16 1.1E-20 171.1 9.4 172 211-391 19-218 (238)
132 1i7n_A Synapsin II; synapse, p 99.6 6.6E-15 2.3E-19 164.6 19.8 219 167-412 68-302 (309)
133 1pk8_A RAT synapsin I; ATP bin 99.6 1E-14 3.5E-19 167.2 20.5 220 167-413 180-415 (422)
134 1i7n_A Synapsin II; synapse, p 99.6 1.5E-14 5.1E-19 161.8 18.0 222 717-968 67-303 (309)
135 1pk8_A RAT synapsin I; ATP bin 99.6 2E-14 6.7E-19 164.9 17.5 218 717-968 179-415 (422)
136 2p0a_A Synapsin-3, synapsin II 99.6 2.8E-14 9.5E-19 161.4 16.9 223 718-970 85-322 (344)
137 2cqy_A Propionyl-COA carboxyla 99.5 5.1E-15 1.8E-19 140.5 3.1 100 765-864 2-107 (108)
138 2cqy_A Propionyl-COA carboxyla 99.5 3.6E-15 1.2E-19 141.6 0.3 99 208-307 3-107 (108)
139 2nu8_B SCS-beta, succinyl-COA 99.5 8.1E-14 2.8E-18 161.5 11.2 168 771-946 4-203 (388)
140 2fp4_B Succinyl-COA ligase [GD 99.4 3.5E-13 1.2E-17 156.2 10.5 167 771-946 4-210 (395)
141 2nu8_B SCS-beta, succinyl-COA 99.3 1.4E-12 4.8E-17 151.2 8.5 167 213-391 4-203 (388)
142 3t7a_A Inositol pyrophosphate 99.3 3.5E-12 1.2E-16 137.9 7.5 202 167-395 57-297 (330)
143 2fp4_B Succinyl-COA ligase [GD 99.2 7.3E-12 2.5E-16 145.2 9.2 167 213-391 4-210 (395)
144 3t7a_A Inositol pyrophosphate 99.2 6.2E-12 2.1E-16 136.0 6.4 199 719-947 58-292 (330)
145 3ufx_B Succinyl-COA synthetase 98.9 7.6E-09 2.6E-13 120.1 14.1 99 771-869 4-110 (397)
146 3ufx_B Succinyl-COA synthetase 98.9 1E-08 3.5E-13 119.1 14.4 106 213-319 4-118 (397)
147 1zcz_A Bifunctional purine bio 98.3 1.5E-06 5.1E-11 97.8 9.1 107 1043-1153 15-138 (464)
148 3mwd_A ATP-citrate synthase; A 97.6 0.00036 1.2E-08 81.1 13.4 103 773-875 9-135 (425)
149 1g8m_A Aicar transformylase-IM 97.5 3.4E-05 1.2E-09 90.0 3.5 115 1040-1156 4-161 (593)
150 3pff_A ATP-citrate synthase; p 97.5 0.00047 1.6E-08 86.0 12.9 104 772-875 8-135 (829)
151 3tig_A TTL protein; ATP-grAsp, 97.4 0.00081 2.8E-08 76.6 13.5 160 805-974 146-363 (380)
152 4ehi_A Bifunctional purine bio 97.2 0.00018 6.3E-09 83.0 4.6 113 1042-1156 25-180 (534)
153 3tig_A TTL protein; ATP-grAsp, 97.1 0.0051 1.8E-07 70.0 15.3 155 250-416 148-360 (380)
154 3mwd_A ATP-citrate synthase; A 97.0 0.0016 5.4E-08 75.7 10.0 103 215-317 9-134 (425)
155 3zzm_A Bifunctional purine bio 97.0 0.00023 7.8E-09 82.2 2.7 112 1042-1155 11-165 (523)
156 3pff_A ATP-citrate synthase; p 96.7 0.0022 7.6E-08 80.0 8.2 104 215-318 9-135 (829)
157 2g1u_A Hypothetical protein TM 95.7 0.03 1E-06 55.7 9.1 82 85-178 12-95 (155)
158 3fwz_A Inner membrane protein 95.4 0.012 4E-07 57.7 4.7 114 642-785 6-120 (140)
159 3llv_A Exopolyphosphatase-rela 94.9 0.029 1E-06 54.7 6.0 86 642-739 5-92 (141)
160 3l9w_A Glutathione-regulated p 94.8 0.015 5.1E-07 67.9 4.0 115 642-786 3-118 (413)
161 3ic5_A Putative saccharopine d 94.5 0.055 1.9E-06 50.5 6.6 91 92-201 5-97 (118)
162 3fwz_A Inner membrane protein 94.0 0.054 1.8E-06 52.8 5.6 76 91-178 6-82 (140)
163 2g1u_A Hypothetical protein TM 93.8 0.2 6.8E-06 49.6 9.2 78 641-730 17-96 (155)
164 2r6j_A Eugenol synthase 1; phe 93.6 0.22 7.4E-06 55.6 10.4 80 85-176 4-88 (318)
165 3keo_A Redox-sensing transcrip 93.6 0.14 4.8E-06 53.5 7.9 128 582-739 33-169 (212)
166 2hmt_A YUAA protein; RCK, KTN, 93.5 0.065 2.2E-06 51.9 5.0 76 642-729 5-81 (144)
167 3qvo_A NMRA family protein; st 93.4 0.37 1.3E-05 51.2 11.3 75 91-177 22-98 (236)
168 3llv_A Exopolyphosphatase-rela 93.4 0.053 1.8E-06 52.8 4.2 73 92-176 6-79 (141)
169 2hmt_A YUAA protein; RCK, KTN, 93.3 0.11 3.8E-06 50.2 6.5 74 92-177 6-80 (144)
170 1hdo_A Biliverdin IX beta redu 93.1 0.63 2.2E-05 47.8 12.3 73 93-177 4-77 (206)
171 3i6i_A Putative leucoanthocyan 93.1 0.46 1.6E-05 53.7 12.1 76 92-177 10-93 (346)
172 3ic5_A Putative saccharopine d 92.9 0.14 4.6E-06 47.7 6.1 85 642-739 4-90 (118)
173 2dt5_A AT-rich DNA-binding pro 92.7 0.19 6.4E-06 52.7 7.4 126 582-739 29-161 (211)
174 1lss_A TRK system potassium up 91.9 0.42 1.4E-05 45.8 8.3 75 643-729 4-80 (140)
175 3r6d_A NAD-dependent epimerase 91.8 1.1 3.9E-05 46.7 12.4 73 92-177 5-83 (221)
176 1id1_A Putative potassium chan 91.7 0.1 3.6E-06 51.6 3.8 85 643-739 3-93 (153)
177 3l9w_A Glutathione-regulated p 91.5 0.22 7.5E-06 58.0 6.7 113 93-228 5-118 (413)
178 3nkl_A UDP-D-quinovosamine 4-d 91.2 0.41 1.4E-05 46.4 7.5 82 642-739 3-89 (141)
179 3c85_A Putative glutathione-re 91.1 0.11 3.8E-06 53.0 3.3 77 642-729 38-116 (183)
180 1id1_A Putative potassium chan 90.6 0.42 1.4E-05 47.1 6.9 74 93-178 4-82 (153)
181 2pzm_A Putative nucleotide sug 90.3 0.91 3.1E-05 50.8 10.3 76 91-176 19-97 (330)
182 3dhn_A NAD-dependent epimerase 90.2 0.57 1.9E-05 49.2 8.1 72 92-176 4-76 (227)
183 2vt3_A REX, redox-sensing tran 90.2 0.29 1E-05 51.4 5.6 126 582-739 34-166 (215)
184 2duw_A Putative COA-binding pr 90.1 1.4 4.9E-05 43.0 10.2 37 93-136 14-50 (145)
185 2duw_A Putative COA-binding pr 90.1 0.61 2.1E-05 45.7 7.5 101 643-764 13-126 (145)
186 3abi_A Putative uncharacterize 89.7 0.49 1.7E-05 54.1 7.6 90 93-202 17-106 (365)
187 4b4k_A N5-carboxyaminoimidazol 89.7 0.15 5.3E-06 50.7 2.8 73 1007-1081 18-92 (181)
188 3nkl_A UDP-D-quinovosamine 4-d 89.7 1.3 4.3E-05 42.8 9.4 91 92-201 4-96 (141)
189 1hdo_A Biliverdin IX beta redu 89.6 0.77 2.6E-05 47.1 8.4 72 644-727 4-76 (206)
190 3qvo_A NMRA family protein; st 89.2 0.51 1.7E-05 50.1 6.7 75 641-729 21-99 (236)
191 2aef_A Calcium-gated potassium 88.7 0.15 5.2E-06 54.3 2.1 85 642-739 8-93 (234)
192 3c85_A Putative glutathione-re 87.7 0.29 9.9E-06 49.8 3.4 75 92-177 39-115 (183)
193 3l4b_C TRKA K+ channel protien 87.5 0.42 1.4E-05 50.2 4.6 74 93-178 1-76 (218)
194 1lnq_A MTHK channels, potassiu 87.3 0.32 1.1E-05 54.9 3.8 110 643-785 115-226 (336)
195 3r6d_A NAD-dependent epimerase 87.2 0.68 2.3E-05 48.4 6.1 74 643-728 5-83 (221)
196 3orf_A Dihydropteridine reduct 87.1 1.6 5.3E-05 46.8 9.0 71 91-176 21-96 (251)
197 4id9_A Short-chain dehydrogena 87.0 1.2 4.1E-05 50.0 8.5 68 91-175 18-85 (347)
198 3orf_A Dihydropteridine reduct 86.9 0.47 1.6E-05 51.0 4.7 72 640-726 19-95 (251)
199 2gas_A Isoflavone reductase; N 86.9 2.2 7.5E-05 46.9 10.4 73 92-177 2-86 (307)
200 1qyc_A Phenylcoumaran benzylic 86.9 2.2 7.5E-05 46.9 10.4 73 92-176 4-86 (308)
201 4gx0_A TRKA domain protein; me 86.8 0.47 1.6E-05 57.7 5.2 109 644-786 349-458 (565)
202 1lss_A TRK system potassium up 86.3 0.65 2.2E-05 44.4 4.9 73 93-177 5-79 (140)
203 3gpi_A NAD-dependent epimerase 86.2 0.57 1.9E-05 51.3 4.9 69 92-175 3-71 (286)
204 3vtz_A Glucose 1-dehydrogenase 85.8 2.5 8.4E-05 45.9 9.8 74 90-176 12-90 (269)
205 2we8_A Xanthine dehydrogenase; 85.7 2.1 7.3E-05 48.9 9.5 34 93-137 205-238 (386)
206 3l4b_C TRKA K+ channel protien 85.7 0.3 1E-05 51.4 2.3 74 645-730 2-77 (218)
207 3dfu_A Uncharacterized protein 85.6 2.1 7.2E-05 45.3 8.7 81 642-739 5-87 (232)
208 1y81_A Conserved hypothetical 85.4 3.2 0.00011 40.1 9.3 39 92-137 14-52 (138)
209 3c1o_A Eugenol synthase; pheny 85.3 2.9 9.8E-05 46.3 10.3 72 92-176 4-86 (321)
210 3n6x_A Putative glutathionylsp 85.3 0.9 3.1E-05 53.1 6.2 69 226-298 341-411 (474)
211 3dqp_A Oxidoreductase YLBE; al 85.2 1.2 3.9E-05 46.6 6.6 69 94-176 2-72 (219)
212 2pzm_A Putative nucleotide sug 85.1 0.96 3.3E-05 50.6 6.3 77 640-726 17-96 (330)
213 1n7h_A GDP-D-mannose-4,6-dehyd 84.9 2.8 9.5E-05 47.8 10.2 74 93-176 29-115 (381)
214 4g6h_A Rotenone-insensitive NA 84.7 0.65 2.2E-05 55.6 4.8 39 87-136 37-75 (502)
215 3tpc_A Short chain alcohol deh 84.6 3.3 0.00011 44.3 10.1 76 91-176 6-90 (257)
216 3s2u_A UDP-N-acetylglucosamine 84.6 2.9 9.8E-05 47.6 10.0 38 92-135 2-39 (365)
217 3p19_A BFPVVD8, putative blue 84.6 1.2 4.1E-05 48.3 6.5 81 86-176 10-96 (266)
218 4egb_A DTDP-glucose 4,6-dehydr 84.6 1.8 6.3E-05 48.5 8.4 76 91-176 23-107 (346)
219 2c20_A UDP-glucose 4-epimerase 84.5 2.2 7.4E-05 47.5 8.9 72 93-176 2-76 (330)
220 2c5a_A GDP-mannose-3', 5'-epim 84.4 2.9 9.8E-05 47.7 10.0 73 92-176 29-102 (379)
221 2wm3_A NMRA-like family domain 84.4 2.5 8.6E-05 46.3 9.2 72 92-176 5-81 (299)
222 4id9_A Short-chain dehydrogena 84.4 0.71 2.4E-05 52.0 4.8 68 640-724 16-83 (347)
223 3dhn_A NAD-dependent epimerase 84.3 0.81 2.8E-05 47.9 4.9 69 643-726 4-75 (227)
224 3i6i_A Putative leucoanthocyan 84.2 1.2 4.2E-05 50.1 6.7 76 643-728 10-93 (346)
225 3m2p_A UDP-N-acetylglucosamine 84.1 2.2 7.6E-05 47.1 8.7 70 92-176 2-71 (311)
226 4grd_A N5-CAIR mutase, phospho 84.1 0.54 1.8E-05 46.6 3.0 68 1012-1081 14-82 (173)
227 1rpn_A GDP-mannose 4,6-dehydra 84.0 3.2 0.00011 46.1 10.0 76 91-176 13-95 (335)
228 2q1w_A Putative nucleotide sug 84.0 2.9 9.8E-05 46.7 9.6 75 92-176 21-98 (333)
229 3sxp_A ADP-L-glycero-D-mannohe 83.9 3 0.0001 47.1 9.9 77 89-176 7-99 (362)
230 2yy7_A L-threonine dehydrogena 83.8 1.4 4.8E-05 48.6 6.8 72 93-176 3-77 (312)
231 3enk_A UDP-glucose 4-epimerase 83.7 2.7 9.1E-05 47.0 9.2 75 92-176 5-87 (341)
232 2io8_A Bifunctional glutathion 83.5 2.3 7.8E-05 51.7 8.8 169 110-298 391-573 (619)
233 1qyd_A Pinoresinol-lariciresin 83.5 3.7 0.00013 45.1 10.1 73 92-176 4-85 (313)
234 2z1m_A GDP-D-mannose dehydrata 83.5 2.9 9.8E-05 46.7 9.3 75 92-176 3-84 (345)
235 3vtz_A Glucose 1-dehydrogenase 83.4 1.2 4.1E-05 48.3 6.0 75 640-727 11-90 (269)
236 2jl1_A Triphenylmethane reduct 83.2 1.4 4.6E-05 48.0 6.3 72 93-176 1-75 (287)
237 1y81_A Conserved hypothetical 83.1 3.6 0.00012 39.7 8.5 104 641-765 12-126 (138)
238 2pk3_A GDP-6-deoxy-D-LYXO-4-he 83.0 3.7 0.00013 45.3 10.0 72 91-176 11-83 (321)
239 2fwm_X 2,3-dihydro-2,3-dihydro 82.9 4.9 0.00017 42.8 10.5 72 92-176 7-83 (250)
240 3un1_A Probable oxidoreductase 82.8 3.5 0.00012 44.4 9.3 73 91-176 27-105 (260)
241 4ina_A Saccharopine dehydrogen 82.8 1.5 5E-05 50.9 6.6 119 93-228 2-136 (405)
242 2ydy_A Methionine adenosyltran 82.6 1.4 4.8E-05 48.7 6.2 67 92-176 2-69 (315)
243 1uay_A Type II 3-hydroxyacyl-C 82.5 3 0.0001 43.9 8.6 69 92-176 2-75 (242)
244 2dtx_A Glucose 1-dehydrogenase 82.5 4.5 0.00015 43.5 10.1 70 92-176 8-83 (264)
245 4b79_A PA4098, probable short- 82.4 6.3 0.00022 41.9 10.9 76 91-176 10-87 (242)
246 2d59_A Hypothetical protein PH 82.4 3.2 0.00011 40.3 8.0 101 643-764 22-133 (144)
247 3ff4_A Uncharacterized protein 82.2 4.5 0.00015 38.2 8.5 97 92-204 4-112 (122)
248 3e8x_A Putative NAD-dependent 82.2 0.65 2.2E-05 49.1 3.1 39 641-689 19-57 (236)
249 3dqp_A Oxidoreductase YLBE; al 82.0 1.5 5.3E-05 45.6 5.9 70 645-727 2-72 (219)
250 2d59_A Hypothetical protein PH 81.9 5.7 0.0002 38.5 9.6 101 93-208 23-135 (144)
251 3slg_A PBGP3 protein; structur 81.9 2.5 8.4E-05 48.0 8.1 74 91-176 23-100 (372)
252 3abi_A Putative uncharacterize 81.8 1.4 4.7E-05 50.3 5.8 115 641-786 14-128 (365)
253 1rkx_A CDP-glucose-4,6-dehydra 81.4 4.4 0.00015 45.5 9.9 75 92-176 9-89 (357)
254 3d7l_A LIN1944 protein; APC893 81.3 3.3 0.00011 42.3 8.1 63 93-176 4-67 (202)
255 2nm0_A Probable 3-oxacyl-(acyl 81.2 5.2 0.00018 42.8 10.0 71 92-176 21-96 (253)
256 4eez_A Alcohol dehydrogenase 1 81.2 1.1 3.9E-05 50.5 4.9 79 642-731 163-245 (348)
257 3ff4_A Uncharacterized protein 81.2 3.5 0.00012 38.9 7.4 98 642-760 3-110 (122)
258 3rft_A Uronate dehydrogenase; 80.8 2.5 8.4E-05 45.7 7.2 70 92-176 3-73 (267)
259 2io8_A Bifunctional glutathion 80.7 6.6 0.00023 47.7 11.4 169 661-855 391-573 (619)
260 1t2a_A GDP-mannose 4,6 dehydra 80.7 5 0.00017 45.5 10.1 74 93-176 25-111 (375)
261 4g65_A TRK system potassium up 80.5 0.89 3E-05 53.7 3.7 74 645-729 5-79 (461)
262 1dhr_A Dihydropteridine reduct 80.2 2.6 8.8E-05 44.7 7.0 71 91-176 6-85 (241)
263 1xq6_A Unknown protein; struct 79.9 2.2 7.4E-05 45.2 6.3 73 92-176 4-78 (253)
264 3tzq_B Short-chain type dehydr 79.9 3.8 0.00013 44.3 8.3 81 86-176 5-94 (271)
265 3s2e_A Zinc-containing alcohol 79.8 2.2 7.4E-05 48.0 6.5 77 641-730 165-244 (340)
266 3gms_A Putative NADPH:quinone 79.7 1.2 4.2E-05 50.1 4.5 85 641-735 143-230 (340)
267 2we8_A Xanthine dehydrogenase; 79.7 10 0.00035 43.3 12.0 38 642-690 203-240 (386)
268 2h7i_A Enoyl-[acyl-carrier-pro 79.5 3.6 0.00012 44.4 8.0 75 91-176 6-96 (269)
269 3e8x_A Putative NAD-dependent 79.5 0.67 2.3E-05 49.0 2.0 73 91-176 20-93 (236)
270 1rpn_A GDP-mannose 4,6-dehydra 79.5 1.7 5.9E-05 48.4 5.6 76 639-724 10-92 (335)
271 4g65_A TRK system potassium up 79.4 0.85 2.9E-05 53.8 3.1 113 642-786 234-349 (461)
272 2jah_A Clavulanic acid dehydro 79.2 2.3 7.9E-05 45.3 6.2 80 87-176 2-93 (247)
273 1uzm_A 3-oxoacyl-[acyl-carrier 79.1 6.1 0.00021 41.9 9.6 72 91-176 14-90 (247)
274 3e48_A Putative nucleoside-dip 78.9 7.6 0.00026 42.0 10.5 72 93-176 1-74 (289)
275 3ai3_A NADPH-sorbose reductase 78.9 2.5 8.5E-05 45.5 6.4 76 91-176 6-94 (263)
276 3sc4_A Short chain dehydrogena 78.6 7.1 0.00024 42.5 10.1 76 91-176 8-102 (285)
277 1jw9_B Molybdopterin biosynthe 78.5 7.9 0.00027 41.4 10.1 115 92-231 31-152 (249)
278 3lf2_A Short chain oxidoreduct 78.3 3.8 0.00013 44.1 7.7 77 90-176 6-96 (265)
279 3kkj_A Amine oxidase, flavin-c 78.2 1.5 5E-05 46.4 4.3 33 94-137 4-36 (336)
280 2x4g_A Nucleoside-diphosphate- 78.1 4 0.00014 45.4 8.1 72 93-176 14-86 (342)
281 2dkn_A 3-alpha-hydroxysteroid 78.1 2.9 9.9E-05 44.3 6.6 65 93-176 2-71 (255)
282 3un1_A Probable oxidoreductase 78.1 2.2 7.5E-05 46.0 5.6 39 641-689 26-64 (260)
283 2wyu_A Enoyl-[acyl carrier pro 77.9 1.6 5.4E-05 47.1 4.4 75 91-176 7-95 (261)
284 3trh_A Phosphoribosylaminoimid 77.8 1.5 5.1E-05 43.4 3.7 67 1013-1081 9-76 (169)
285 3c1a_A Putative oxidoreductase 77.7 1.5 5E-05 48.9 4.2 141 642-814 9-154 (315)
286 2q1w_A Putative nucleotide sug 77.6 2.1 7.3E-05 47.8 5.6 75 641-725 19-96 (333)
287 3uve_A Carveol dehydrogenase ( 77.5 9.6 0.00033 41.3 10.8 41 86-136 5-45 (286)
288 3sc6_A DTDP-4-dehydrorhamnose 77.5 3.3 0.00011 44.9 7.0 60 93-176 6-65 (287)
289 1jw9_B Molybdopterin biosynthe 77.5 8 0.00027 41.3 9.8 36 642-688 30-66 (249)
290 3enk_A UDP-glucose 4-epimerase 77.4 2.1 7.3E-05 47.8 5.5 72 642-723 4-83 (341)
291 3g0o_A 3-hydroxyisobutyrate de 77.4 12 0.00041 41.1 11.6 36 91-137 6-41 (303)
292 1n2s_A DTDP-4-, DTDP-glucose o 77.3 3.2 0.00011 45.3 6.9 63 93-176 1-63 (299)
293 4gx0_A TRKA domain protein; me 77.3 4.5 0.00016 48.9 8.8 109 93-227 349-457 (565)
294 2fwm_X 2,3-dihydro-2,3-dihydro 77.3 3 0.0001 44.5 6.4 37 642-688 6-42 (250)
295 4g6h_A Rotenone-insensitive NA 77.2 1.4 4.9E-05 52.5 4.2 39 639-688 38-76 (502)
296 4e6p_A Probable sorbitol dehyd 77.2 1.9 6.6E-05 46.3 4.9 77 90-176 6-91 (259)
297 3lp6_A Phosphoribosylaminoimid 77.2 1.7 5.7E-05 43.2 3.8 68 1012-1081 9-77 (174)
298 1iuk_A Hypothetical protein TT 77.1 10 0.00035 36.5 9.6 101 93-208 14-128 (140)
299 3ius_A Uncharacterized conserv 77.0 1.6 5.5E-05 47.5 4.2 35 92-137 5-39 (286)
300 3vps_A TUNA, NAD-dependent epi 76.9 1.8 6.3E-05 47.7 4.8 37 91-137 6-42 (321)
301 4b79_A PA4098, probable short- 76.9 3.7 0.00013 43.7 6.8 71 641-723 9-83 (242)
302 1e6u_A GDP-fucose synthetase; 76.9 4 0.00014 45.0 7.6 61 93-176 4-64 (321)
303 2dc1_A L-aspartate dehydrogena 76.8 2.4 8.2E-05 45.0 5.4 102 645-785 2-104 (236)
304 1orr_A CDP-tyvelose-2-epimeras 76.8 5.1 0.00018 44.6 8.5 74 93-176 2-82 (347)
305 3h7a_A Short chain dehydrogena 76.8 2.4 8.1E-05 45.5 5.4 76 91-176 6-92 (252)
306 1nff_A Putative oxidoreductase 76.8 2.1 7.2E-05 46.1 5.0 76 91-176 6-90 (260)
307 3pdi_B Nitrogenase MOFE cofact 76.8 7.2 0.00025 45.7 9.9 86 91-201 312-397 (458)
308 2pk3_A GDP-6-deoxy-D-LYXO-4-he 76.8 2.3 7.8E-05 47.1 5.5 71 641-725 10-81 (321)
309 3ihm_A Styrene monooxygenase A 76.8 1.6 5.5E-05 50.9 4.4 35 91-136 21-55 (430)
310 2ew8_A (S)-1-phenylethanol deh 76.7 4.4 0.00015 43.1 7.6 76 91-176 6-91 (249)
311 3ay3_A NAD-dependent epimerase 76.6 1.8 6.1E-05 46.6 4.4 70 92-176 2-72 (267)
312 3ruf_A WBGU; rossmann fold, UD 76.3 4.2 0.00014 45.6 7.6 73 92-176 25-109 (351)
313 2aef_A Calcium-gated potassium 76.3 1.4 4.9E-05 46.6 3.5 73 92-178 9-82 (234)
314 3on5_A BH1974 protein; structu 76.3 3.7 0.00013 46.4 6.9 82 642-736 198-281 (362)
315 3o38_A Short chain dehydrogena 76.2 6.1 0.00021 42.4 8.6 75 91-176 21-110 (266)
316 2nm0_A Probable 3-oxacyl-(acyl 76.1 3.1 0.00011 44.6 6.1 39 641-689 19-57 (253)
317 1qyd_A Pinoresinol-lariciresin 76.0 5.6 0.00019 43.6 8.4 73 643-727 4-85 (313)
318 2r6j_A Eugenol synthase 1; phe 76.0 5.5 0.00019 44.0 8.4 73 643-727 11-88 (318)
319 2p5y_A UDP-glucose 4-epimerase 76.0 6.2 0.00021 43.3 8.8 72 93-176 1-75 (311)
320 3iup_A Putative NADPH:quinone 76.0 9.4 0.00032 43.5 10.5 83 92-185 171-258 (379)
321 2cfc_A 2-(R)-hydroxypropyl-COM 75.8 4.8 0.00016 42.6 7.6 75 92-176 2-89 (250)
322 1cyd_A Carbonyl reductase; sho 75.6 2.5 8.5E-05 44.7 5.2 76 91-176 6-85 (244)
323 3oow_A Phosphoribosylaminoimid 75.6 1.2 4.1E-05 43.9 2.3 68 1012-1081 7-75 (166)
324 3t4x_A Oxidoreductase, short c 75.6 2.5 8.6E-05 45.6 5.2 81 86-176 4-94 (267)
325 2dtx_A Glucose 1-dehydrogenase 75.5 3.3 0.00011 44.6 6.2 38 642-689 7-44 (264)
326 3nyw_A Putative oxidoreductase 75.5 2.7 9.3E-05 44.9 5.5 77 90-176 5-96 (250)
327 3kuu_A Phosphoribosylaminoimid 75.5 1.4 4.9E-05 43.7 2.8 68 1012-1081 14-82 (174)
328 1ek6_A UDP-galactose 4-epimera 75.4 5.9 0.0002 44.2 8.5 75 92-176 2-90 (348)
329 3afn_B Carbonyl reductase; alp 75.4 3.2 0.00011 44.1 6.1 75 92-176 7-94 (258)
330 2pnf_A 3-oxoacyl-[acyl-carrier 75.2 2.8 9.7E-05 44.3 5.5 76 91-176 6-94 (248)
331 3uce_A Dehydrogenase; rossmann 75.1 3.1 0.00011 43.5 5.7 62 92-176 6-68 (223)
332 1rkx_A CDP-glucose-4,6-dehydra 74.9 3 0.0001 46.9 5.9 73 642-724 8-86 (357)
333 3jv7_A ADH-A; dehydrogenase, n 74.9 1.3 4.6E-05 49.9 2.9 79 641-730 170-251 (345)
334 1zud_1 Adenylyltransferase THI 74.8 19 0.00064 38.4 11.9 114 92-230 28-148 (251)
335 1t2a_A GDP-mannose 4,6 dehydra 74.8 2.7 9.2E-05 47.8 5.5 44 635-688 15-59 (375)
336 2v6g_A Progesterone 5-beta-red 74.7 5.2 0.00018 45.0 7.8 73 93-176 2-81 (364)
337 3i4f_A 3-oxoacyl-[acyl-carrier 74.6 4.3 0.00015 43.5 6.8 76 91-176 6-94 (264)
338 2h31_A Multifunctional protein 74.6 5 0.00017 46.0 7.4 167 899-1081 157-336 (425)
339 3d3w_A L-xylulose reductase; u 74.6 2.9 9.9E-05 44.2 5.3 76 91-176 6-85 (244)
340 2z1m_A GDP-D-mannose dehydrata 74.5 3 0.0001 46.5 5.7 72 643-724 3-81 (345)
341 1yxm_A Pecra, peroxisomal tran 74.5 4.7 0.00016 44.2 7.2 77 90-176 16-109 (303)
342 1zem_A Xylitol dehydrogenase; 74.4 3.7 0.00013 44.1 6.2 76 91-176 6-93 (262)
343 3d7l_A LIN1944 protein; APC893 74.4 2.5 8.7E-05 43.2 4.7 62 645-727 5-67 (202)
344 3keo_A Redox-sensing transcrip 74.3 3.1 0.00011 43.3 5.2 89 91-201 83-176 (212)
345 3iup_A Putative NADPH:quinone 74.1 9.2 0.00032 43.6 9.8 77 643-730 171-252 (379)
346 2dkn_A 3-alpha-hydroxysteroid 74.0 1.7 5.7E-05 46.2 3.3 67 644-726 2-70 (255)
347 1db3_A GDP-mannose 4,6-dehydra 73.9 6.2 0.00021 44.5 8.3 74 93-176 2-87 (372)
348 3qha_A Putative oxidoreductase 73.9 10 0.00034 41.6 9.7 36 92-138 15-50 (296)
349 1sb8_A WBPP; epimerase, 4-epim 73.8 4.9 0.00017 45.1 7.4 73 92-176 27-111 (352)
350 2c20_A UDP-glucose 4-epimerase 73.8 2.8 9.4E-05 46.6 5.1 69 644-724 2-73 (330)
351 3t7c_A Carveol dehydrogenase; 73.7 15 0.00052 40.1 11.1 41 86-136 22-62 (299)
352 1qyc_A Phenylcoumaran benzylic 73.6 7 0.00024 42.7 8.4 73 643-727 4-86 (308)
353 3ors_A N5-carboxyaminoimidazol 73.6 1.6 5.5E-05 42.9 2.6 67 1013-1081 6-73 (163)
354 3kkj_A Amine oxidase, flavin-c 73.5 2.3 8E-05 44.7 4.3 33 645-688 4-36 (336)
355 3uxy_A Short-chain dehydrogena 73.3 6.6 0.00023 42.3 7.9 72 91-176 27-103 (266)
356 1vl0_A DTDP-4-dehydrorhamnose 73.3 5.7 0.0002 43.1 7.5 61 92-176 12-72 (292)
357 4b4o_A Epimerase family protei 73.2 2.8 9.7E-05 45.9 5.0 35 93-137 1-35 (298)
358 1uay_A Type II 3-hydroxyacyl-C 73.1 2.9 9.8E-05 44.1 4.9 36 643-688 2-37 (242)
359 3rc1_A Sugar 3-ketoreductase; 73.1 1.2 4.1E-05 50.5 1.9 145 642-815 26-177 (350)
360 2ehd_A Oxidoreductase, oxidore 73.1 2.7 9.1E-05 44.2 4.6 75 92-176 5-87 (234)
361 3e03_A Short chain dehydrogena 73.1 13 0.00043 40.2 10.1 76 91-176 5-99 (274)
362 3ucx_A Short chain dehydrogena 73.0 5.6 0.00019 42.8 7.2 78 89-176 8-97 (264)
363 1qsg_A Enoyl-[acyl-carrier-pro 72.9 3.8 0.00013 44.1 5.8 75 91-176 8-96 (265)
364 3svt_A Short-chain type dehydr 72.9 3 0.0001 45.4 5.0 78 89-176 8-100 (281)
365 3dii_A Short-chain dehydrogena 72.9 5.3 0.00018 42.4 6.9 75 92-176 2-84 (247)
366 3awd_A GOX2181, putative polyo 72.9 4.3 0.00015 43.3 6.3 76 91-176 12-99 (260)
367 2gdz_A NAD+-dependent 15-hydro 72.8 8.8 0.0003 41.1 8.8 75 92-176 7-95 (267)
368 3dfu_A Uncharacterized protein 72.8 4.1 0.00014 43.0 5.8 70 91-177 5-76 (232)
369 3uxy_A Short-chain dehydrogena 72.8 3.3 0.00011 44.8 5.3 40 641-690 26-65 (266)
370 2bgk_A Rhizome secoisolaricire 72.7 3.6 0.00012 44.4 5.6 76 91-176 15-101 (278)
371 3oig_A Enoyl-[acyl-carrier-pro 72.7 4.2 0.00014 43.7 6.1 38 90-136 5-43 (266)
372 1uzm_A 3-oxoacyl-[acyl-carrier 72.7 4.1 0.00014 43.3 6.0 39 641-689 13-51 (247)
373 3lzw_A Ferredoxin--NADP reduct 72.7 1.7 5.9E-05 48.1 3.1 35 92-137 7-41 (332)
374 1yo6_A Putative carbonyl reduc 72.6 4.7 0.00016 42.5 6.4 75 92-176 3-90 (250)
375 3fbs_A Oxidoreductase; structu 72.6 3.1 0.00011 45.1 5.1 33 93-136 3-35 (297)
376 3hyw_A Sulfide-quinone reducta 72.5 2.8 9.6E-05 48.8 5.0 33 93-136 3-37 (430)
377 2o23_A HADH2 protein; HSD17B10 72.4 6.3 0.00022 42.1 7.5 76 91-176 11-95 (265)
378 2pd6_A Estradiol 17-beta-dehyd 72.4 4.3 0.00015 43.4 6.1 37 90-136 5-41 (264)
379 1ff9_A Saccharopine reductase; 72.4 5.5 0.00019 46.7 7.4 73 643-728 3-78 (450)
380 1ff9_A Saccharopine reductase; 72.3 6.5 0.00022 46.1 8.0 73 92-177 3-78 (450)
381 3ftp_A 3-oxoacyl-[acyl-carrier 72.1 3.7 0.00013 44.4 5.5 81 86-176 22-114 (270)
382 4dll_A 2-hydroxy-3-oxopropiona 72.1 12 0.00041 41.5 9.9 36 91-137 30-65 (320)
383 3ak4_A NADH-dependent quinucli 72.1 4 0.00014 43.8 5.8 76 91-176 11-95 (263)
384 1udb_A Epimerase, UDP-galactos 72.1 11 0.00039 41.6 9.8 74 93-176 1-82 (338)
385 3itj_A Thioredoxin reductase 1 72.0 2.4 8.1E-05 47.1 4.1 35 91-136 21-55 (338)
386 3rft_A Uronate dehydrogenase; 72.0 2.3 7.9E-05 45.9 3.8 69 643-725 3-71 (267)
387 3tpc_A Short chain alcohol deh 72.0 4 0.00014 43.6 5.7 39 641-689 5-43 (257)
388 4hb9_A Similarities with proba 72.0 2.9 0.0001 47.8 4.9 34 93-137 2-35 (412)
389 3tsc_A Putative oxidoreductase 72.0 15 0.0005 39.6 10.4 39 87-135 6-44 (277)
390 3m2p_A UDP-N-acetylglucosamine 71.8 3.4 0.00012 45.5 5.3 68 643-725 2-69 (311)
391 3v2h_A D-beta-hydroxybutyrate 71.7 4.7 0.00016 43.9 6.3 77 90-176 23-113 (281)
392 1fjh_A 3alpha-hydroxysteroid d 71.7 4.5 0.00015 43.0 6.1 65 93-176 2-71 (257)
393 2raf_A Putative dinucleotide-b 71.7 10 0.00035 39.2 8.6 36 91-137 18-53 (209)
394 3is3_A 17BETA-hydroxysteroid d 71.6 4.1 0.00014 44.0 5.7 82 85-176 11-105 (270)
395 1ooe_A Dihydropteridine reduct 71.6 4.7 0.00016 42.5 6.1 70 92-176 3-81 (236)
396 2ggs_A 273AA long hypothetical 71.6 8.4 0.00029 41.1 8.3 65 94-176 2-66 (273)
397 3slg_A PBGP3 protein; structur 71.2 3.4 0.00012 46.7 5.2 40 641-690 22-62 (372)
398 2dc1_A L-aspartate dehydrogena 71.1 6.5 0.00022 41.5 7.1 102 94-227 2-104 (236)
399 2p91_A Enoyl-[acyl-carrier-pro 71.1 5.7 0.0002 43.2 6.8 75 91-176 20-108 (285)
400 1n7h_A GDP-D-mannose-4,6-dehyd 71.1 4 0.00014 46.4 5.8 36 644-689 29-64 (381)
401 2wm3_A NMRA-like family domain 71.1 4.5 0.00015 44.2 6.0 73 643-727 5-81 (299)
402 3gpi_A NAD-dependent epimerase 71.0 3.2 0.00011 45.1 4.7 36 643-689 3-38 (286)
403 4ina_A Saccharopine dehydrogen 71.0 2.4 8.2E-05 49.0 3.9 119 644-786 2-136 (405)
404 1dhr_A Dihydropteridine reduct 71.0 3.3 0.00011 43.8 4.7 38 642-689 6-43 (241)
405 3kvo_A Hydroxysteroid dehydrog 70.9 16 0.00055 41.0 10.7 76 91-176 44-138 (346)
406 2gas_A Isoflavone reductase; N 70.8 8.2 0.00028 42.1 8.1 85 643-739 2-100 (307)
407 3ruf_A WBGU; rossmann fold, UD 70.7 2.7 9.2E-05 47.2 4.1 38 641-688 23-60 (351)
408 2eez_A Alanine dehydrogenase; 70.7 2.3 7.9E-05 48.5 3.6 72 92-176 166-238 (369)
409 2wsb_A Galactitol dehydrogenas 70.7 3.7 0.00013 43.6 5.1 76 91-176 10-94 (254)
410 3uko_A Alcohol dehydrogenase c 70.7 5.6 0.00019 45.3 6.9 79 641-731 192-276 (378)
411 3rih_A Short chain dehydrogena 70.7 5.9 0.0002 43.5 6.8 76 91-176 40-128 (293)
412 1xq6_A Unknown protein; struct 70.6 2.6 8.8E-05 44.6 3.7 74 642-727 3-78 (253)
413 3f1l_A Uncharacterized oxidore 70.6 5.1 0.00017 42.7 6.1 36 91-136 11-46 (252)
414 2bka_A CC3, TAT-interacting pr 70.6 4 0.00014 43.0 5.2 72 92-176 18-93 (242)
415 1yde_A Retinal dehydrogenase/r 70.6 3.6 0.00012 44.5 5.0 76 91-176 8-91 (270)
416 2z2v_A Hypothetical protein PH 70.4 2.7 9.4E-05 47.8 4.1 132 641-806 14-151 (365)
417 1gy8_A UDP-galactose 4-epimera 70.4 16 0.00054 41.5 10.7 74 93-176 3-102 (397)
418 2d1y_A Hypothetical protein TT 70.4 5.8 0.0002 42.3 6.6 74 92-176 6-86 (256)
419 1iuk_A Hypothetical protein TT 70.4 9.3 0.00032 36.8 7.4 101 642-763 12-125 (140)
420 3ajr_A NDP-sugar epimerase; L- 70.3 9.7 0.00033 41.7 8.6 69 94-176 1-71 (317)
421 3k31_A Enoyl-(acyl-carrier-pro 70.3 6 0.0002 43.4 6.8 77 91-176 29-117 (296)
422 3ip1_A Alcohol dehydrogenase, 70.3 4.5 0.00015 46.6 6.0 78 641-729 212-293 (404)
423 3r1i_A Short-chain type dehydr 70.2 7 0.00024 42.4 7.2 76 91-176 31-118 (276)
424 3ged_A Short-chain dehydrogena 70.2 4.1 0.00014 43.6 5.2 75 92-176 2-84 (247)
425 3imf_A Short chain dehydrogena 70.2 7.1 0.00024 41.7 7.2 76 91-176 5-92 (257)
426 3qiv_A Short-chain dehydrogena 70.2 4.7 0.00016 42.9 5.8 76 91-176 8-95 (253)
427 3m1a_A Putative dehydrogenase; 70.0 5.6 0.00019 43.1 6.4 75 92-176 5-88 (281)
428 1f0y_A HCDH, L-3-hydroxyacyl-C 70.0 3.4 0.00012 45.5 4.7 35 91-136 14-48 (302)
429 3n6x_A Putative glutathionylsp 70.0 4.6 0.00016 47.2 5.9 69 784-855 341-411 (474)
430 2v6g_A Progesterone 5-beta-red 70.0 3.5 0.00012 46.4 5.0 71 644-724 2-78 (364)
431 1z45_A GAL10 bifunctional prot 70.0 9.8 0.00033 47.3 9.4 75 91-176 10-93 (699)
432 1zud_1 Adenylyltransferase THI 69.9 24 0.00083 37.6 11.3 35 642-687 27-62 (251)
433 3o9z_A Lipopolysaccaride biosy 69.9 16 0.00055 40.3 10.2 92 643-762 3-103 (312)
434 1fjh_A 3alpha-hydroxysteroid d 69.8 2.5 8.5E-05 45.2 3.4 67 644-726 2-70 (257)
435 1ooe_A Dihydropteridine reduct 69.7 2.1 7.3E-05 45.1 2.9 37 643-689 3-39 (236)
436 3l6e_A Oxidoreductase, short-c 69.7 3.1 0.00011 44.0 4.1 75 92-176 3-86 (235)
437 1y1p_A ARII, aldehyde reductas 69.7 4.6 0.00016 44.8 5.8 41 86-136 5-45 (342)
438 1o5i_A 3-oxoacyl-(acyl carrier 69.7 5.2 0.00018 42.6 5.9 74 89-176 16-90 (249)
439 4egb_A DTDP-glucose 4,6-dehydr 69.7 3.5 0.00012 46.1 4.8 74 641-724 22-104 (346)
440 1vl0_A DTDP-4-dehydrorhamnose 69.6 2.8 9.6E-05 45.6 3.9 63 640-726 9-71 (292)
441 1u11_A PURE (N5-carboxyaminoim 69.6 2.4 8.2E-05 42.4 2.9 68 1012-1081 23-91 (182)
442 3oa2_A WBPB; oxidoreductase, s 69.6 11 0.00038 41.8 8.8 115 643-786 3-127 (318)
443 3tjr_A Short chain dehydrogena 69.5 4.8 0.00016 44.3 5.8 76 91-176 30-117 (301)
444 4dgk_A Phytoene dehydrogenase; 69.4 3 0.0001 49.5 4.3 34 92-136 1-34 (501)
445 1gee_A Glucose 1-dehydrogenase 69.4 3.2 0.00011 44.4 4.2 76 91-176 6-94 (261)
446 3pxx_A Carveol dehydrogenase; 69.4 24 0.00081 38.0 11.4 36 91-136 9-44 (287)
447 3ek2_A Enoyl-(acyl-carrier-pro 69.3 4.3 0.00015 43.6 5.3 77 90-176 12-101 (271)
448 3c1o_A Eugenol synthase; pheny 69.3 11 0.00036 41.6 8.7 74 642-727 3-86 (321)
449 3dii_A Short-chain dehydrogena 69.3 2 6.8E-05 45.8 2.5 36 643-688 2-37 (247)
450 3itj_A Thioredoxin reductase 1 69.0 2.4 8.2E-05 47.1 3.2 35 642-687 21-55 (338)
451 3gem_A Short chain dehydrogena 69.0 3.1 0.00011 44.8 4.0 76 91-176 26-108 (260)
452 3p19_A BFPVVD8, putative blue 69.0 2.4 8.1E-05 45.9 3.0 38 641-688 14-51 (266)
453 3gvc_A Oxidoreductase, probabl 69.0 4.6 0.00016 43.9 5.4 76 91-176 28-112 (277)
454 1iy8_A Levodione reductase; ox 68.9 5.6 0.00019 42.7 6.1 76 91-176 12-101 (267)
455 3gem_A Short chain dehydrogena 68.8 1.7 6E-05 46.8 1.9 39 641-689 25-63 (260)
456 3sc6_A DTDP-4-dehydrorhamnose 68.8 2.3 8E-05 46.2 3.0 58 643-724 4-62 (287)
457 2z1n_A Dehydrogenase; reductas 68.8 5.3 0.00018 42.8 5.8 76 91-176 6-94 (260)
458 4eso_A Putative oxidoreductase 68.7 3.9 0.00013 43.8 4.7 76 91-176 7-91 (255)
459 3ijr_A Oxidoreductase, short c 68.7 17 0.00058 39.5 10.0 76 91-176 46-134 (291)
460 1yo6_A Putative carbonyl reduc 68.6 2.9 0.0001 44.1 3.7 37 643-689 3-41 (250)
461 1xmp_A PURE, phosphoribosylami 68.6 2.3 7.8E-05 42.1 2.4 67 1013-1081 14-81 (170)
462 3o9z_A Lipopolysaccaride biosy 68.6 19 0.00065 39.7 10.5 117 92-228 3-126 (312)
463 2axq_A Saccharopine dehydrogen 68.5 5.8 0.0002 46.7 6.5 75 642-729 22-99 (467)
464 3uce_A Dehydrogenase; rossmann 68.5 2.4 8.3E-05 44.3 2.9 61 642-725 5-66 (223)
465 3i1j_A Oxidoreductase, short c 68.4 5.3 0.00018 42.2 5.7 36 91-136 13-48 (247)
466 2ag5_A DHRS6, dehydrogenase/re 68.4 7.3 0.00025 41.2 6.8 75 92-176 6-83 (246)
467 3tl3_A Short-chain type dehydr 68.3 4.2 0.00014 43.5 4.8 74 91-176 8-88 (257)
468 2c5a_A GDP-mannose-3', 5'-epim 68.3 7 0.00024 44.4 7.0 71 642-724 28-99 (379)
469 1yqd_A Sinapyl alcohol dehydro 68.0 3.4 0.00012 46.9 4.3 75 91-179 187-263 (366)
470 2ae2_A Protein (tropinone redu 67.9 6.1 0.00021 42.2 6.1 76 91-176 8-96 (260)
471 3ioy_A Short-chain dehydrogena 67.8 4.2 0.00014 45.3 4.9 36 91-136 7-42 (319)
472 3tox_A Short chain dehydrogena 67.8 5.6 0.00019 43.3 5.8 76 91-176 7-94 (280)
473 3pgx_A Carveol dehydrogenase; 67.7 24 0.00081 38.0 10.9 35 91-135 14-48 (280)
474 4a2c_A Galactitol-1-phosphate 67.6 9.2 0.00031 42.8 7.7 85 640-735 158-246 (346)
475 3ged_A Short-chain dehydrogena 67.6 2.1 7.3E-05 45.8 2.3 36 643-688 2-37 (247)
476 3n74_A 3-ketoacyl-(acyl-carrie 67.5 6.4 0.00022 42.0 6.1 76 91-176 8-92 (261)
477 1yb1_A 17-beta-hydroxysteroid 67.4 6.8 0.00023 42.2 6.4 76 91-176 30-117 (272)
478 2h78_A Hibadh, 3-hydroxyisobut 67.2 19 0.00065 39.3 10.1 35 92-137 3-37 (302)
479 1hdc_A 3-alpha, 20 beta-hydrox 67.2 5.7 0.00019 42.4 5.6 75 92-176 5-88 (254)
480 2ywl_A Thioredoxin reductase r 67.1 5 0.00017 40.1 4.9 33 93-136 2-34 (180)
481 3rg8_A Phosphoribosylaminoimid 67.0 3.6 0.00012 40.4 3.5 135 1013-1172 5-144 (159)
482 1rjw_A ADH-HT, alcohol dehydro 67.0 4.8 0.00016 45.1 5.2 76 91-180 164-243 (339)
483 3ktd_A Prephenate dehydrogenas 67.0 3.5 0.00012 46.4 4.0 40 86-136 2-41 (341)
484 3s55_A Putative short-chain de 67.0 14 0.00048 39.9 8.9 36 91-136 9-44 (281)
485 2cuk_A Glycerate dehydrogenase 67.0 11 0.00039 41.6 8.2 38 90-138 142-179 (311)
486 1geg_A Acetoin reductase; SDR 66.9 5.8 0.0002 42.3 5.6 75 92-176 2-88 (256)
487 3m6i_A L-arabinitol 4-dehydrog 66.8 4 0.00014 46.3 4.5 100 641-762 178-285 (363)
488 2bka_A CC3, TAT-interacting pr 66.8 3.4 0.00012 43.5 3.7 38 642-689 17-56 (242)
489 1o4v_A Phosphoribosylaminoimid 66.7 2.4 8.4E-05 42.4 2.3 68 1012-1081 15-83 (183)
490 1w6u_A 2,4-dienoyl-COA reducta 66.7 7.2 0.00025 42.6 6.5 76 91-176 25-113 (302)
491 2pd4_A Enoyl-[acyl-carrier-pro 66.6 6.5 0.00022 42.5 6.0 74 92-176 6-93 (275)
492 1spx_A Short-chain reductase f 66.6 8.1 0.00028 41.7 6.8 75 92-176 6-95 (278)
493 3nrc_A Enoyl-[acyl-carrier-pro 66.5 9.7 0.00033 41.2 7.4 77 91-176 25-112 (280)
494 3ef6_A Toluene 1,2-dioxygenase 66.5 5.1 0.00018 46.2 5.4 35 93-138 3-39 (410)
495 1e3j_A NADP(H)-dependent ketos 66.4 6.5 0.00022 44.3 6.2 98 641-760 167-271 (352)
496 2gk4_A Conserved hypothetical 66.4 19 0.00067 37.8 9.3 77 92-175 3-92 (232)
497 2o23_A HADH2 protein; HSD17B10 66.4 3.6 0.00012 44.0 3.9 39 641-689 10-48 (265)
498 1vl8_A Gluconate 5-dehydrogena 66.4 7.1 0.00024 42.0 6.2 76 91-176 20-108 (267)
499 2ydy_A Methionine adenosyltran 66.4 2.7 9.4E-05 46.3 3.0 36 643-688 2-37 (315)
500 1kew_A RMLB;, DTDP-D-glucose 4 66.3 15 0.00051 41.1 9.2 73 94-176 2-82 (361)
No 1
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=1.2e-181 Score=1769.40 Aligned_cols=1065 Identities=58% Similarity=0.929 Sum_probs=1000.6
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK 165 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~ 165 (1190)
||++.+++||||+|+|+++|||++||||||++++++|+++|++|+++++++++.+++..++|..|+.|.+.+.+.+++++
T Consensus 1 m~~~~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~ 80 (1073)
T 1a9x_A 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK 80 (1073)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIAN 245 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~ 245 (1190)
+++|+|+|+++++++++.+..++++++|+++|++++|+++++++.+.||..++++|+++|+|+|++..+++.+++.++++
T Consensus 81 ~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~ 160 (1073)
T 1a9x_A 81 ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA 160 (1073)
T ss_dssp HCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHH
T ss_pred hCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 246 EIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 246 ~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
++| ||+||||.++.||+|+.+++|.+||.+++..++..++.++++||+||+||+|+++++++|.+|+++.+|.++++++
T Consensus 161 ~ig-~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~~~e~~dp 239 (1073)
T 1a9x_A 161 DVG-FPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDA 239 (1073)
T ss_dssp HHC-SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSC
T ss_pred HcC-CCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCCCEEEEEEEecccC
Confidence 999 9999999999999999999999999999998887776779999999999999999999999999999999999999
Q ss_pred CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCH
Q 001014 326 MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPI 405 (1190)
Q Consensus 326 ~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l 405 (1190)
.++|+|+++..+|+++++++.++++++.+.++++++|+++|++|+||++++++|++||||||||+++++.+++++||+|+
T Consensus 240 ~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~~l 319 (1073)
T 1a9x_A 240 MGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPI 319 (1073)
T ss_dssp TTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCH
T ss_pred CccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCCCH
Confidence 99999999999999889999999999999999999999669999999999867899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCccccCC-CCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHH
Q 001014 406 AKMAAKLSVGYSLDQIPNDITKK-TPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKAL 484 (1190)
Q Consensus 406 ~~~~~~~alG~~l~~~~~~i~~~-~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~ 484 (1190)
++.++++++|++++++.+++++. +++.|+|..+++++++|+|+|++|++.+.+++++|+++|+||++|+|++||++||.
T Consensus 320 ~~~~~~~a~G~~l~~~~~~i~~~~~~a~f~p~~~~v~~~ip~~~~~~~~~~~~~~~~~~~~~G~v~~~g~~~~ea~~ka~ 399 (1073)
T 1a9x_A 320 AKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKAL 399 (1073)
T ss_dssp HHHHHHHHTTCCGGGSBCTTTTTCSBSCSCCBCSSEEEEEEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHhhccccCccCHHHcccCCCcEEEEcccccccccCCCCcccCCCccCcEEEEEEcCCHHHHHHHHH
Confidence 99999999999999999999887 88999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCccCCCCCCCCCCCCC---HHHHHhHhcCCCchhHHHHHHHHHCCCChHHHHhhhCCCHHHHHHHHHHHHHHHHH
Q 001014 485 RSLECGFSGWGCSNVKELDWD---WEQLKYSLRVPNPDRMQAIYAAMKKGMKVDEIHELSFIDKWFLTQFKELIDVEQFL 561 (1190)
Q Consensus 485 ~~l~~~~~g~~~~~~~~~~~~---~~~l~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~ 561 (1190)
++++.++.|+..+ +. ..+ .++|.+.|++|+++|+|++++|||+|+|+|+|+++|+||+|||+||++|+++|++|
T Consensus 400 ~~l~~~~~g~~~~-~~--~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~ 476 (1073)
T 1a9x_A 400 RGLEVGATGFDPK-VS--LDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKV 476 (1073)
T ss_dssp HHSSSSCSSSCCS-SC--TTCTTHHHHHHHHHHTCBTTHHHHHHHHHHTTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccCcCcc-cc--ccccccHHHHHHHHhCCCccHHHHHHHHHHcCCCHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 9999888898632 11 222 57899999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccccCCCCC-
Q 001014 562 LTQSVSNMTKDDFYEVKRRGFSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDFECESAP- 640 (1190)
Q Consensus 562 ~~~~~~~~~~~~l~~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~~~~~~~- 640 (1190)
+...+..++.+.|++||++||||.|||++|+.++.+||++|+++||.|+||+||||||||+|.||||||||+.++|..+
T Consensus 477 ~~~~~~~~~~~~~~~~k~~gf~d~~ia~~~~~~~~~~~~~r~~~~~~~~~k~vd~~a~e~~~~t~y~y~~y~~~~~~~~~ 556 (1073)
T 1a9x_A 477 AEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPS 556 (1073)
T ss_dssp HHHTGGGCCHHHHHHHHHTTCCHHHHHHHTTSCHHHHHHHHHHTTCCCEEEECCSBTTSSCCCCEEEEEESCSCCCCCCC
T ss_pred HhcCCCCCCHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHcCCCceEEEeCCccccCcCCCceEEEEECCCcccccc
Confidence 8654445789999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
++++||||||+|++|||||+|||||+++++++|+++|++++++++||++++++++.+|++|++|.+.++++++++.+++|
T Consensus 557 ~~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d 636 (1073)
T 1a9x_A 557 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK 636 (1073)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCS
T ss_pred ccCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++.++++.++.++..|+ +.| ++++|++++++++++||..++++|+++|||+|++..+.+.+++.+
T Consensus 637 ~Vi~~~g~~~~~~la~~Le----------~~G---i~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~ 703 (1073)
T 1a9x_A 637 GVIVQYGGQTPLKLARALE----------AAG---VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVE 703 (1073)
T ss_dssp EEECSSSTHHHHTTHHHHH----------HTT---CCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHHHHHH
T ss_pred eEEeecCCchHHHHHHHHH----------HCC---CCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCHHHHHH
Confidence 9999999998889999998 899 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+++++|||+||||++++||+||.+|+|.+||.++++.+...++..+++||+||++.+|++|++++|+. .+++.++++|+
T Consensus 704 ~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~~-~v~~~~i~e~~ 782 (1073)
T 1a9x_A 704 KAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE-MVLIGGIMEHI 782 (1073)
T ss_dssp HHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECSS-CEEEEEEEEES
T ss_pred HHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEECC-eEEEEeeEEEE
Confidence 99999999999999999999999999999999999987665566799999999444499999999864 68889999999
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCH
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPL 960 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l 960 (1190)
++.|+|+|++.+.+|++.++++..+++++++++++++||++|++++||++ ++|++||||||||++++++++++++|+|+
T Consensus 783 ~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v-~~~~~~viEvNpR~~~~~~~~~~~tGi~l 861 (1073)
T 1a9x_A 783 EQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPL 861 (1073)
T ss_dssp SCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE-CSSCEEEEEEECSCCTTHHHHHHHHSCCH
T ss_pred eccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE-ECCeEEEEEEECCCccHHHHHHHHHCcCH
Confidence 99999999999999998999999999999999999999999999999999 68899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCC
Q 001014 961 AKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPL 1040 (1190)
Q Consensus 961 ~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~ 1040 (1190)
+++++++++|.+++++++.+...+++++||+++|||.+++++|+.+||+|+|||+|||+|+|+++|+.||+.++++.+|.
T Consensus 862 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~vk~~~~~f~~~~~~d~~lg~~~~stGev~g~~~~~~~a~~ka~~~~~~~~p~ 941 (1073)
T 1a9x_A 862 AKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKK 941 (1073)
T ss_dssp HHHHHHHHTTCCHHHHTCCSCCCCSSEEEEEEECGGGGCTTSCCCCCSSCCCCEEEEEEESSHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHcCCCchhcccCcCcCCCeEEEEeccCCcccCCCCcCCCCCcccccCceEEecCCHHHHHHhhHHhccCCCCC
Confidence 99999999999998776655555589999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHhHHHcCcEEEEEEcCCCCC
Q 001014 1041 SGTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGDMVANGQIQMMVITSSGDS 1120 (1190)
Q Consensus 1041 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~~i~~~~i~lvint~~~~~ 1120 (1190)
.|++|+++.+.+|+.+.+++++|.++||+|+||.||+++|+++||+++.|.|++||+|+++|+|++|+|||||||++++.
T Consensus 942 ~g~vlisv~d~~K~~~~~~a~~l~~~G~~i~aT~gTa~~l~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~~~~~ 1021 (1073)
T 1a9x_A 942 HGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRR 1021 (1073)
T ss_dssp SSEEEEECCGGGGTTHHHHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCCSHH
T ss_pred cceEEEEecCcCHHHHHHHHHHHHHCCCEEEEcCchHHHHHhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred CCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHHhccCCCcccccchhhhh
Q 001014 1121 LDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRSLKSNTVTMTALQDFFD 1172 (1190)
Q Consensus 1121 ~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~~~~~~~~~~~l~~~~~ 1172 (1190)
+ ..|||.|||.|++++|||+||+++|+|++++|+..+. +++.++|+||.
T Consensus 1022 ~-~~~~~~~r~~a~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 1070 (1073)
T 1a9x_A 1022 A-IEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADAT--EKVISVQEMHA 1070 (1073)
T ss_dssp H-HHHTHHHHHHHHHTTCEEESSHHHHHHHHHHHTCCTT--TCCCCHHHHHH
T ss_pred c-ccchHHHHHHHHHhCCCEEccHHHHHHHHHHHHhhcc--CCeeEHHHHHh
Confidence 5 7899999999999999999999999999999976432 78999999986
No 2
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=2.4e-48 Score=509.25 Aligned_cols=390 Identities=34% Similarity=0.574 Sum_probs=354.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
++.+||||+|+|++.|||+.||||++.+++++|+++|+++++++++|.+..++...+|+.|..|.+.+.+.++++++++|
T Consensus 5 ~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D 84 (1073)
T 1a9x_A 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPD 84 (1073)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++.++++..++++..+. +++.+++.| ++++|++++++.+++||..++++|+++|||+|++..+.+.+++.+
T Consensus 85 ~V~p~~g~~~~l~~~~~l~----~~~~le~~g---v~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~ 157 (1073)
T 1a9x_A 85 AVLPTMGGQTALNCALELE----RQGVLEEFG---VTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALA 157 (1073)
T ss_dssp EEECSSSHHHHHHHHHHHH----HTTHHHHHT---CEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHHH
T ss_pred EEEeccCCchHHHHHHHHH----HhhHHHHcC---CeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCHHHHHH
Confidence 9999999887665554333 233444889 999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+++++|||+||||++++||+|+.+++|.+|+.++++.+...+...+++||+||++++|+++++++|.+|+++.++.+++.
T Consensus 158 ~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~~~e~~ 237 (1073)
T 1a9x_A 158 VAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENF 237 (1073)
T ss_dssp HHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEES
T ss_pred HHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEEEeCCCCEEEEEEEecc
Confidence 99999999999999999999999999999999999987776667789999999655899999999988999888888888
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCC-cceeEEEEEec-CCCEEEEEEccCCCCChhhhhcccCC
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVC-GLMNCQYAITT-SGDVYLLEANPRASRTVPFVSKAIGH 958 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~-G~~~ief~~d~-~g~~~viEiNpR~~~s~~~~~~~~G~ 958 (1190)
.+.++|.|++....|++.++++..+++++.+.++++++|++ |.+++||++++ +|++||||||||++++++++++++|+
T Consensus 238 dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~ 317 (1073)
T 1a9x_A 238 DAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGF 317 (1073)
T ss_dssp SCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSC
T ss_pred cCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCC
Confidence 88888989887778888899999999999999999999999 99999999975 68999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCC--CCc-------cccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHH
Q 001014 959 PLAKYAALVMSGKSLNDLG--FTK-------EVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAK 1029 (1190)
Q Consensus 959 ~l~~~~~~~~lG~~l~~~~--~~~-------~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~k 1029 (1190)
|++++++++++|.+++++. +.. .+..+++.++.|.|+|.++++.+..+|..|+++||||++|+|++||++|
T Consensus 318 ~l~~~~~~~a~G~~l~~~~~~i~~~~~~a~f~p~~~~v~~~ip~~~~~~~~~~~~~~~~~~~~~G~v~~~g~~~~ea~~k 397 (1073)
T 1a9x_A 318 PIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQK 397 (1073)
T ss_dssp CHHHHHHHHHTTCCGGGSBCTTTTTCSBSCSCCBCSSEEEEEEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHH
T ss_pred CHHHHHHHHHcCCChHHhhccccCccCHHHcccCCCcEEEEcccccccccCCCCcccCCCccCcEEEEEEcCCHHHHHHH
Confidence 9999999999999988642 111 1455677889999999999998899999999999999999999999999
Q ss_pred HHHHcCCC
Q 001014 1030 AQIAAGQK 1037 (1190)
Q Consensus 1030 a~~~~~~~ 1037 (1190)
|.++....
T Consensus 398 a~~~l~~~ 405 (1073)
T 1a9x_A 398 ALRGLEVG 405 (1073)
T ss_dssp HHHHSSSS
T ss_pred HHHhhccc
Confidence 99997643
No 3
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=6.8e-45 Score=437.29 Aligned_cols=393 Identities=23% Similarity=0.312 Sum_probs=325.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECC-------CCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITP-------MTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p-------~~~~~v~~i 162 (1190)
+++||||+|+|++ +.+++++++++|+++++++++++......+++|+.+ +.| .+.+.+.++
T Consensus 5 ~~~kiLI~g~g~~-----------a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~ 73 (446)
T 3ouz_A 5 EIKSILIANRGEI-----------ALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAA 73 (446)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHH
T ss_pred ccceEEEECCCHH-----------HHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 4679999999975 679999999999999999877766666678899887 432 467899999
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHH
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDEC 240 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~ 240 (1190)
++++++|+|+|+++. ..++... ...+++.|++++|+++++++.+.||..++++|+++|+|+|++. .+.+.+++
T Consensus 74 ~~~~~~d~i~p~~g~-~~e~~~~----~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~ 148 (446)
T 3ouz_A 74 AEIAEADAIFPGYGF-LSENQNF----VEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAA 148 (446)
T ss_dssp HHHHTCSEEECCSST-TTTCHHH----HHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHH
T ss_pred HHHhCcCEEEECCcc-cccCHHH----HHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHH
Confidence 999999999998753 2233322 4468889999999999999999999999999999999999997 88999999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.++++++| ||+||||..++||+|+.++++.+|+.++++.+... ++...++||+||+|.+|+++.+++|.+|+++.
T Consensus 149 ~~~~~~~g-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~ 227 (446)
T 3ouz_A 149 KKLAKEIG-YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIH 227 (446)
T ss_dssp HHHHHHHC-SSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEE
T ss_pred HHHHHHhC-CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEE
Confidence 99999999 99999999999999999999999999999887643 23568999999999889999999999888887
Q ss_pred EE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCC
Q 001014 317 IC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSR 392 (1190)
Q Consensus 317 ~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~g 392 (1190)
+. ..++.. +......|++.++++..+++.+.+.++++++|+. |++++||++++ +|++||+|||||+++
T Consensus 228 ~~~~~~~~~~~~------~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~-G~~~ve~~~~~-~g~~~~iEiNpR~~g 299 (446)
T 3ouz_A 228 VGERDCSMQRRH------QKLIEESPAILLDEKTRTRLHETAIKAAKAIGYE-GAGTFEFLVDK-NLDFYFIEMNTRLQV 299 (446)
T ss_dssp EEEEEEEEEETT------EEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TCCEEEEEEESSCCT
T ss_pred EeeceeeeeecC------ceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCC-CceEEEEEEeC-CCCEEEEEeECCCCC
Confidence 74 333322 4566678987799999999999999999999997 99999999997 689999999999999
Q ss_pred chHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCCccccCCcCeEE-eeece---eeecccCCCCc
Q 001014 393 SSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTPASFEPSIDYVV-TKIPR---FAFEKFPGSEP 457 (1190)
Q Consensus 393 s~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~~~f~p~~~~v~-~k~p~---~~~~~~~~~~~ 457 (1190)
++++++.++|+|++++++++++|.+++ .+.++. .+++..|.|..+.+. +..|. ..+......+.
T Consensus 300 ~~~~~~~~~G~dl~~~~~~~~~G~~l~-~~~~~~~~g~ai~~ri~ae~~~~~~p~~G~i~~~~~p~~~~vr~~~~~~~G~ 378 (446)
T 3ouz_A 300 EHCVSEMVSGIDIIEQMIKVAEGYALP-SQESIKLNGHSIECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDY 378 (446)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCC-CGGGCCCCSEEEEEEEESBCTTTCCBCCEECSEEECCCSTTEEEEECCCTTC
T ss_pred cceeeeeeeCCCHHHHHHHHHCCCCCC-cCCCCCcceEEEEEEeeccCCCccCCCCcEEeEEecCCCCCEEEEcccccCC
Confidence 999999999999999999999999998 332222 234455788887554 23331 12222222334
Q ss_pred ccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 458 LLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 458 ~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
.+.+.+++ +|+|++.|+|++||++|+.++++ +.+.|+.+| .+.|...|.||.
T Consensus 379 ~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~~~--------~~~~~~~~~~~~ 432 (446)
T 3ouz_A 379 SVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISGIKTT--------KDFHLSMMENPD 432 (446)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCT--------HHHHHHHHTCHH
T ss_pred EeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeCccCC--------HHHHHHHhCChh
Confidence 55666676 99999999999999999999996 778887554 568888888875
No 4
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=1.4e-45 Score=435.40 Aligned_cols=357 Identities=14% Similarity=0.234 Sum_probs=301.8
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-CCcHHHHHHHhhhcCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-PLTVEDVLNVIDLERP 719 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-p~~~e~v~~i~~~~~~ 719 (1190)
..+++|+|||+|++ +.+++++++++|++++++|++++.+... .+|..+.. ..+.+.+.++++. +
T Consensus 12 ~~~k~IlIlG~G~~-----------g~~la~aa~~~G~~vi~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~--~ 76 (389)
T 3q2o_A 12 LPGKTIGIIGGGQL-----------GRMMALAAKEMGYKIAVLDPTKNSPCAQ--VADIEIVASYDDLKAIQHLAEI--S 76 (389)
T ss_dssp CTTSEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESSTTCTTTT--TCSEEEECCTTCHHHHHHHHHT--C
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCCchHH--hCCceEecCcCCHHHHHHHHHh--C
Confidence 36789999999994 6677999999999999999988766544 67776654 3557888888865 6
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|.|.+.++. .+..++..++ +.| + ++|+++++++++||..++++|+++|||+|++..+.+.+++.
T Consensus 77 dvI~~~~e~-~~~~~~~~l~----------~~g---~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~ 140 (389)
T 3q2o_A 77 DVVTYEFEN-IDYRCLQWLE----------KHA---Y--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLT 140 (389)
T ss_dssp SEEEESCCC-CCHHHHHHHH----------HHS---C--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHH
T ss_pred CEeeecccc-ccHHHHHHHH----------hhC---c--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHH
Confidence 776554443 4556777777 777 5 88999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCC-CcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee
Q 001014 800 AIAKEIGYPVVVRPSYVLG-GRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME 878 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~g-g~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e 878 (1190)
++++++|||+||||+++++ |+|+.+++|.+|+.++++.+. ..+++||+||++++|++|++++|.+|++..+++.+
T Consensus 141 ~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e 216 (389)
T 3q2o_A 141 EAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVAE 216 (389)
T ss_dssp HHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCEE
T ss_pred HHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecccCceEEEEEEEEcCCCCEEEecCee
Confidence 9999999999999999975 899999999999999988643 46899999996569999999999889999999999
Q ss_pred eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCC
Q 001014 879 HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGH 958 (1190)
Q Consensus 879 ~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~ 958 (1190)
++...|++ .....|. .++++..+++++++.+++++||++|++++||+++.+|++||||+|||++++.+++.+++|+
T Consensus 217 ~~~~~g~~---~~~~~p~-~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~~~~g~ 292 (389)
T 3q2o_A 217 NIHVNNIL---HESIVPA-RITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACET 292 (389)
T ss_dssp EEEETTEE---EEEEESC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSS
T ss_pred eEEcCCce---EEEECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHHHHcCC
Confidence 88766554 2222344 6999999999999999999999999999999997788999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCccccC-Cee--EEeeccCCCcccCCCceee-CCc----ccccceeeeeeCCHHHHHHHH
Q 001014 959 PLAKYAALVMSGKSLNDLGFTKEVIP-KHV--SVKEAVLPFEKFQGCDVLL-GPE----MRSTGEVMGIDMSFPIAFAKA 1030 (1190)
Q Consensus 959 ~l~~~~~~~~lG~~l~~~~~~~~~~~-~~~--~vk~~~~~~~~~~~~~~~l-g~~----~rs~G~v~~~g~~~~eA~~ka 1030 (1190)
|++++++++++|.+++++.+.....+ +.. .++.+.+++.++|+++++| ||+ ||||||||++|+|+++|++||
T Consensus 293 ~~~~~~~r~~lg~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~lygk~~~~~~r~~G~v~~~~~~~~~a~~~a 372 (389)
T 3q2o_A 293 SQFGQHIRAICNLPLGETNLLKPVVMVNILGEHIEGVLRQVNRLTGCYLHLYGKEEAKAQRKMGHVNILNDNIEVALEKA 372 (389)
T ss_dssp CHHHHHHHHHHTCCCCCCCBCSCEEEEEEEHHHHHHHHHTGGGCTTEEEEECCCSSCCTTSEEEEEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCccccCcEEEEEEecCchhhHHHHHHhCCCCEEEECCCCCCCCCCeeEEEEEEcCCHHHHHHHH
Confidence 99999999999999997654321111 111 1345567898999999999 997 999999999999999999999
Q ss_pred HHHcCC
Q 001014 1031 QIAAGQ 1036 (1190)
Q Consensus 1031 ~~~~~~ 1036 (1190)
+.+.-.
T Consensus 373 ~~~~~w 378 (389)
T 3q2o_A 373 KSLHIW 378 (389)
T ss_dssp HHTTSC
T ss_pred HHhCcc
Confidence 887543
No 5
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=1.2e-44 Score=439.57 Aligned_cols=395 Identities=20% Similarity=0.287 Sum_probs=314.5
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHC---------CCeEEEEccCCC--CCCCCccCcceEEECC-----
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEE---------GYEVILINSNPA--TIMTDPGLADRTYITP----- 153 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~---------G~~vi~v~~~~~--~~~~~~~~ad~~~i~p----- 153 (1190)
.+++||||+|+|.+ +..++++++++ |++++++.+..+ ..+...++||+.+..|
T Consensus 54 ~~~~kvLIanrGei-----------A~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~ 122 (587)
T 3jrx_A 54 RVIEKVLIANNGIA-----------AVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNN 122 (587)
T ss_dssp CCCCEEEECCCHHH-----------HHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGG
T ss_pred cccCEEEEECChHH-----------HHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeCCCCcc
Confidence 35789999999987 56899999976 799999976433 4444567899887542
Q ss_pred ---CCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 154 ---MTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 154 ---~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
.+.+.+.+++++.++|+|+|+++ ...++... .+.|+..|++++||++++++.+.||..+|++|+++|||+|+
T Consensus 123 ~syld~~~Il~~a~~~~vdaV~pG~G-flsEn~~~----a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp 197 (587)
T 3jrx_A 123 NNYANVELIVDIAKRIPVQAVWAGWG-HASENPKL----PELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLP 197 (587)
T ss_dssp GTTTCHHHHHHHHHHTTCSEEECCSS-TTTTCTHH----HHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCC
T ss_pred ccccCHHHHHHHHHHhCCCEEEeCCC-ccccCHHH----HHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCC
Confidence 36789999999999999999976 23344333 45788999999999999999999999999999999999999
Q ss_pred eee-----------------------------cCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHH
Q 001014 231 SGI-----------------------------GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAG 281 (1190)
Q Consensus 231 ~~~-----------------------------v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~ 281 (1190)
+.. +.+.+++.++++++| ||+||||+.++||+|+++|++.+||.++++.+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iG-yPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a 276 (587)
T 3jrx_A 198 WSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG-FPLMIKASEGGGGKGIRKAESAEDFPILFRQV 276 (587)
T ss_dssp BTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHC-SSEEEEETTCCSSSSEEEECSTTTHHHHHHHH
T ss_pred eecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcC-CeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHH
Confidence 876 789999999999999 99999999999999999999999999999998
Q ss_pred HhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHH
Q 001014 282 LAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAI 357 (1190)
Q Consensus 282 ~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i 357 (1190)
........++||+||+|.+|++|+++.|+.|+++.+ |+.++.+ ...+..+|++.++++..+++.+.+.++
T Consensus 277 ~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~------qk~ie~aPa~~l~~~~~~~i~~~A~~~ 350 (587)
T 3jrx_A 277 QSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRH------QKIVEEAPATIAPLAIFEFMEQCAIRL 350 (587)
T ss_dssp HHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSS------CEEEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred HhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccc------cceeEecCCCCCCHHHHHHHHHHHHHH
Confidence 877667799999999999999999999988898877 4444432 456677899878999999999999999
Q ss_pred HHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCC---------------
Q 001014 358 IREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIP--------------- 422 (1190)
Q Consensus 358 ~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~--------------- 422 (1190)
++++|++ |+++|||++++ +|++||+|||||+++++++++.+||+|++++++++++|.+|++++
T Consensus 351 a~alGy~-G~~~VEfl~d~-dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~ 428 (587)
T 3jrx_A 351 AKTVGYV-SAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTP 428 (587)
T ss_dssp HHHHTCC-EEEEEEEEECS-SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCC
T ss_pred HHHcCCc-ceeEEEEEEeC-CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccchhcccccccccccccc
Confidence 9999996 99999999997 788999999999999999999999999999999999999997432
Q ss_pred ------------------ccccCCCC-ccccCCcCeEE-eeeceeeec-ccCC--CCcccCCCCCc-EEEEEEEeCCHHH
Q 001014 423 ------------------NDITKKTP-ASFEPSIDYVV-TKIPRFAFE-KFPG--SEPLLTTQMKS-VGEAMALGRTFQE 478 (1190)
Q Consensus 423 ------------------~~i~~~~~-~~f~p~~~~v~-~k~p~~~~~-~~~~--~~~~l~~~~~s-~G~v~a~G~~~~e 478 (1190)
-+++.++| ..|.|+.+.+. +..|.+.-. .+.+ ....+...++| +|+|+++|.|+++
T Consensus 429 ~~~~~~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~ 508 (587)
T 3jrx_A 429 ISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREE 508 (587)
T ss_dssp CCSSSCSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECCC----------CCEEEEEEEESSHHH
T ss_pred cccccccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccccccCCcCcccCcccceEEEEcCCHHH
Confidence 01234555 35889888665 233422100 0000 11123445566 8999999999999
Q ss_pred HHHHHHHhhh-cCccC-CCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 479 SFQKALRSLE-CGFSG-WGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 479 a~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
|+.|+.++|+ +.+.| +.+| .+.|.+.|.+|.
T Consensus 509 a~~~~~~al~~~~i~g~~~tn--------~~~~~~~~~~~~ 541 (587)
T 3jrx_A 509 AISNMVVALKELSIRGDFRTT--------VEYLINLLETES 541 (587)
T ss_dssp HHHHHHHHHHHHHHSSTTSST--------THHHHHHHTSHH
T ss_pred HHHHHHHHHhccEEeCCCCCc--------HHHHHHHhCChh
Confidence 9999999996 78888 6665 467888888875
No 6
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=1.7e-44 Score=437.83 Aligned_cols=396 Identities=20% Similarity=0.277 Sum_probs=302.3
Q ss_pred CCCCCEEEEEcCCccccccccccchHHHHHHHHHHHC---------CCeEEEEccCCC--CCCCCccCcceEEECC----
Q 001014 89 RTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEE---------GYEVILINSNPA--TIMTDPGLADRTYITP---- 153 (1190)
Q Consensus 89 ~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~---------G~~vi~v~~~~~--~~~~~~~~ad~~~i~p---- 153 (1190)
..+++||||+|+|.+ +..+++++|++ |++++++.+..+ ..+...++||+.+..|
T Consensus 37 ~~~~~kvLianrGei-----------a~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~~~~~ 105 (540)
T 3glk_A 37 DRVIEKVLIANNGIA-----------AVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPN 105 (540)
T ss_dssp SCCCCEEEECCCHHH-----------HHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSG
T ss_pred cccccEEEEECChHH-----------HHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEeCCCCc
Confidence 345789999999987 56899999986 799999966332 4444567899887542
Q ss_pred ----CCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC
Q 001014 154 ----MTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229 (1190)
Q Consensus 154 ----~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp 229 (1190)
.+.+.+.+++++.++|+|+|+++. ..++... .+.++..|++++||++++++.+.||..+|++|+++|||+|
T Consensus 106 ~~sy~d~~~ii~~a~~~~~daI~pg~gf-lsE~~~~----a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp 180 (540)
T 3glk_A 106 NNNYANVELIVDIAKRIPVQAVWAGWGH-ASENPKL----PELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTL 180 (540)
T ss_dssp GGTTTCHHHHHHHHHHTTCSEEECCSSG-GGGCTHH----HHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBC
T ss_pred ccccccHHHHHHHHHHhCCCEEEeCCCc-cccCHHH----HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCC
Confidence 367899999999999999999763 3344333 4578899999999999999999999999999999999999
Q ss_pred Ceee-----------------------------cCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHH
Q 001014 230 PSGI-----------------------------GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKA 280 (1190)
Q Consensus 230 ~~~~-----------------------------v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~ 280 (1190)
++.. +.+.+++.++++++| ||+||||..++||+|+++|++.+||.++++.
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~ig-yPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~ 259 (540)
T 3glk_A 181 PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG-FPLMIKASEGGGGKGIRKAESAEDFPILFRQ 259 (540)
T ss_dssp CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHC-SSEEEEETTCC----EEEECSTTTHHHHHHH
T ss_pred CcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcC-CcEEEEECCCCCCCCEEEECCHHHHHHHHHH
Confidence 9977 889999999999999 9999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHH
Q 001014 281 GLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIA 356 (1190)
Q Consensus 281 ~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~ 356 (1190)
+........++||+||+|.+|++|.+++|+.|+++.++ +.++.+ ...+..+|++.++++..+++.+.+.+
T Consensus 260 ~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~------~k~ie~~Pa~~l~~~~~~~l~~~a~~ 333 (540)
T 3glk_A 260 VQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRH------QKIVEEAPATIAPLAIFEFMEQCAIR 333 (540)
T ss_dssp HHHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---------CCSEEEESCTTSCHHHHHHHHHHHHH
T ss_pred HHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecc------cceEEecCCCCCCHHHHHHHHHHHHH
Confidence 88776677899999999989999999999888888773 343332 44566789987899999999999999
Q ss_pred HHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCC--------------
Q 001014 357 IIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIP-------------- 422 (1190)
Q Consensus 357 i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~-------------- 422 (1190)
+++++|++ |++++||++++ +|++||+|||||+++++++++.+||+|++++++++++|.+|++++
T Consensus 334 ~~~alG~~-G~~~VEf~~d~-dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~ 411 (540)
T 3glk_A 334 LAKTVGYV-SAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVT 411 (540)
T ss_dssp HHHHHTCC-EEEEEEEEEET-TSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCS
T ss_pred HHHHcCCc-cceEEEEEEcC-CCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCccccccccccccccccccc
Confidence 99999996 99999999997 788999999999999999999999999999999999999997432
Q ss_pred -------------------ccccCCCC-ccccCCcCeEEe-eeceeeecc--cC-CCCcccCCCCCc-EEEEEEEeCCHH
Q 001014 423 -------------------NDITKKTP-ASFEPSIDYVVT-KIPRFAFEK--FP-GSEPLLTTQMKS-VGEAMALGRTFQ 477 (1190)
Q Consensus 423 -------------------~~i~~~~~-~~f~p~~~~v~~-k~p~~~~~~--~~-~~~~~l~~~~~s-~G~v~a~G~~~~ 477 (1190)
-+++.++| ..|.|+.+.+.. ..|.+.-.. +. .....+...+++ +|+|++.|+|++
T Consensus 412 ~~~~~~~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~ 491 (540)
T 3glk_A 412 PISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENRE 491 (540)
T ss_dssp CCCSCCC----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC------------CEEEEEEEESSHH
T ss_pred ccccccccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCCHH
Confidence 01224455 358888886652 334221100 00 001123345565 899999999999
Q ss_pred HHHHHHHHhhh-cCccC-CCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 478 ESFQKALRSLE-CGFSG-WGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 478 ea~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
||++|+.++|+ +.+.| +.+| .+.|.+.|.+|.
T Consensus 492 ~a~~~~~~al~~~~i~g~~~tn--------~~~~~~~~~~~~ 525 (540)
T 3glk_A 492 EAISNMVVALKELSIRGDFRTT--------VEYLINLLETES 525 (540)
T ss_dssp HHHHHHHHHHHHHTCC----HH--------HHHHHHHHHSHH
T ss_pred HHHHHHHHHHhccEEecccCCc--------HHHHHHHhCChh
Confidence 99999999996 78888 6555 567888888875
No 7
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=100.00 E-value=7.9e-45 Score=451.73 Aligned_cols=399 Identities=19% Similarity=0.266 Sum_probs=320.9
Q ss_pred ccCCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CC-------CC
Q 001014 84 QKLGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TP-------MT 155 (1190)
Q Consensus 84 ~~m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p-------~~ 155 (1190)
.||+..+|++||||+|+|++ +++++++++++|+++++++++++..+.+.+++|+.+. .| ++
T Consensus 20 ~mm~~~~m~~kILI~g~Gei-----------a~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld 88 (675)
T 3u9t_A 20 HMNPDYRSIQRLLVANRGEI-----------ACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLR 88 (675)
T ss_dssp -----CCCCSEEEECCCHHH-----------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTC
T ss_pred cccccccCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccC
Confidence 47777778899999999976 6799999999999999999988877777788998874 22 46
Q ss_pred HHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeee--
Q 001014 156 PELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGI-- 233 (1190)
Q Consensus 156 ~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~-- 233 (1190)
.+.+.+++++.++|+|+|+++. ..++... ...+++.|++++||++++++.+.||..+|++|+++|+|+|++..
T Consensus 89 ~~~i~~~a~~~~~daI~pg~gf-lsE~~~~----a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~ 163 (675)
T 3u9t_A 89 GDRIIAAALASGAQAIHPGYGF-LSENADF----ARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 163 (675)
T ss_dssp HHHHHHHHHHTTCSEEECCSST-TTTCHHH----HHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSC
T ss_pred HHHHHHHHHHhCcCEEEeCCcc-cccCHHH----HHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccC
Confidence 7899999999999999998853 3333322 45688899999999999999999999999999999999999875
Q ss_pred cCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEe
Q 001014 234 GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRD 309 (1190)
Q Consensus 234 v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d 309 (1190)
+.+.+++.++++++| ||+||||..|+||+|+++|++.+||.++++.+... +++..++||+||+|.+|++++++.|
T Consensus 164 ~~s~~e~~~~a~~ig-yPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d 242 (675)
T 3u9t_A 164 AQDLETFRREAGRIG-YPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFAD 242 (675)
T ss_dssp CCCTTHHHHHHHHSC-SSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEEC
T ss_pred CCCHHHHHHHHHhCC-CcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEc
Confidence 788999999999999 99999999999999999999999999998765432 2356899999999988999999999
Q ss_pred CCCcEEEEEe----eeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEE
Q 001014 310 LADNVVIICS----IENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIE 385 (1190)
Q Consensus 310 ~~g~~~~~~~----~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viE 385 (1190)
.+|+++.+.. .++.+ ...+...|++.++++..+++.+.+.++++++|+. |++++||++++ +|++||+|
T Consensus 243 ~~G~vv~l~~rd~s~qr~~------qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~~~-dG~~~~iE 314 (675)
T 3u9t_A 243 RHGHCLYLNERDCSIQRRH------QKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYV-GAGTVEFLLDE-RGQFFFME 314 (675)
T ss_dssp SSSCEEEEEEEECCCBSSS------SBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCC-SEEEEECCBCT-TSCBCBCE
T ss_pred CCCCEEEEeccccceeecc------ceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCc-cceEEEEEEcC-CCCEEEEe
Confidence 9999887743 33222 4567788998899999999999999999999995 99999999997 78899999
Q ss_pred eCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCC-ccccCCcCeEE-eeec------e
Q 001014 386 MNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTP-ASFEPSIDYVV-TKIP------R 446 (1190)
Q Consensus 386 iNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~-~~f~p~~~~v~-~k~p------~ 446 (1190)
||||+++++++++.+||+|++++++++++|.+++..+.++. .++| ..|.|..+.+. +..| +
T Consensus 315 iNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aedp~~~f~P~~G~l~~~~~p~~~~gvr 394 (675)
T 3u9t_A 315 MNTRLQVEHPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRR 394 (675)
T ss_dssp EESSCCTTHHHHHHTTTCCHHHHHHHHHTTCCCSCCTTTCCCCSEEEEEEEESCCTTTTSCCCCCBCSEEECCCCCTTEE
T ss_pred ccccccCCchhhhhhcCCCHHHHHHHHHCCCCCCCCccccccCcceeEEEEEeccCcccccCCCCEEEEEECCCCCCCEE
Confidence 99999999999999999999999999999999876544332 3344 34788877553 2334 2
Q ss_pred eeecccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 447 FAFEKFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+.....+ +..+....++ +|+|++.|.|++||++|+.++|+ +.+.|+.+| .+.|...|.||.
T Consensus 395 ~d~~~~~--G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~i~g~~tn--------~~~~~~~~~~~~ 457 (675)
T 3u9t_A 395 VDSGVRE--GDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTN--------LAFLRRILGHPA 457 (675)
T ss_dssp EEESCCT--TCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCT--------HHHHHHHHTCHH
T ss_pred EEecccC--CCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEECccCC--------HHHHHHHhCCHH
Confidence 2222222 3345555554 99999999999999999999997 778887555 678888888874
No 8
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=1e-42 Score=412.64 Aligned_cols=354 Identities=15% Similarity=0.173 Sum_probs=293.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERP 719 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~ 719 (1190)
.+++||+|||+|+. +++++++++++|+++++++++|+.+... ++|+.+..+ .+.+.+.+++ +++
T Consensus 33 ~~~~~IlIlG~G~l-----------g~~~~~aa~~lG~~v~v~d~~~~~p~~~--~ad~~~~~~~~d~~~l~~~a--~~~ 97 (419)
T 4e4t_A 33 LPGAWLGMVGGGQL-----------GRMFCFAAQSMGYRVAVLDPDPASPAGA--VADRHLRAAYDDEAALAELA--GLC 97 (419)
T ss_dssp CTTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECSCTTCHHHH--HSSEEECCCTTCHHHHHHHH--HHC
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCcCchhh--hCCEEEECCcCCHHHHHHHH--hcC
Confidence 46789999999984 5666999999999999999888776543 678877655 4588999999 579
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|+|++.++.. +..++..++ +.+ ++||+++++.+++||..+|++|+++|||+|++..+.+.+++.
T Consensus 98 D~V~~~~e~~-~~~~~~~l~----------~~~-----~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~ 161 (419)
T 4e4t_A 98 EAVSTEFENV-PAASLDFLA----------RTT-----FVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALA 161 (419)
T ss_dssp SEEEECCTTC-CHHHHHHHH----------TTS-----EESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHH
T ss_pred CEEEEccCcC-CHHHHHHHH----------ccC-----CcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHH
Confidence 9999766544 335666666 445 678999999999999999999999999999999999999999
Q ss_pred HHHHH----hCCcEEEecC-cCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEE
Q 001014 800 AIAKE----IGYPVVVRPS-YVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIG 874 (1190)
Q Consensus 800 ~~~~~----igyPvvvKP~-~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~ 874 (1190)
+++++ + ||+||||. .+++|+|+.+++|.+|+.++++.+ ...+++||+||++++|++|.+++|.+|++..+
T Consensus 162 ~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~ 236 (419)
T 4e4t_A 162 ALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKYEVSALIARGADGRSAAF 236 (419)
T ss_dssp TSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEEEEEEEEEECTTSCEEEC
T ss_pred HHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEE
Confidence 88888 9 99999999 888999999999999999998863 45789999999768999999999988999988
Q ss_pred eeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhc
Q 001014 875 GIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSK 954 (1190)
Q Consensus 875 ~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~ 954 (1190)
++.++....++. .....|++.++++..+++++++.+++++||++|++++||+++.+|++||+|||||++++.+++..
T Consensus 237 ~~~e~~~~~g~~---~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~~t~~ 313 (419)
T 4e4t_A 237 PLAQNVHHNGIL---ALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVD 313 (419)
T ss_dssp CCEEEEEETTEE---EEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHH
T ss_pred eCeEEEeeCCeE---EEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCCeEee
Confidence 888887654433 12234665599999999999999999999999999999999878899999999999999999999
Q ss_pred ccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeec-----------cC----CCcccCCCceee-CC----cccccc
Q 001014 955 AIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEA-----------VL----PFEKFQGCDVLL-GP----EMRSTG 1014 (1190)
Q Consensus 955 ~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~-----------~~----~~~~~~~~~~~l-g~----~~rs~G 1014 (1190)
++|+|++++++++++|.++++........+ ..+-.. .. -..+.|+++.++ |+ ..|++|
T Consensus 314 ~~~~s~~~~~~ra~~G~pl~~~~~~~~~~m--~n~lg~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~ygk~~~~~~rkmG 391 (419)
T 4e4t_A 314 ACATSQFEQQVRAMTRMPLGNPRQHSPAAM--LNILGDVWFPNGAAAGAVTPPWDTVAAMPAAHLHLYGKEEARVGRKMG 391 (419)
T ss_dssp HBSSCHHHHHHHHHTTCCCCCCCBCSCEEE--EEEEGGGGCTTCGGGCCCCCCHHHHHTSTTEEEEECCCSCCCTTCEEE
T ss_pred ccCCCHHHHHHHHHcCCCCCCccccCCeEE--EEEecCccccccccccccchHHHHHHhCCCCEEEECCCCCCCCCCceE
Confidence 999999999999999999987643221100 001000 01 112357888888 87 578999
Q ss_pred eeeeeeCCHHHHHHHHHHHcC
Q 001014 1015 EVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1015 ~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
||+.+|+|.++|.++|..++.
T Consensus 392 hv~~~~~~~~~~~~~a~~~~~ 412 (419)
T 4e4t_A 392 HVNFTAEMRDDAVAAATACAQ 412 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 9
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=6e-42 Score=404.28 Aligned_cols=354 Identities=17% Similarity=0.231 Sum_probs=290.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d 169 (1190)
..++|+|||+|++ |++++++++++|++|++++++++.+. ...+|..+..+ .+.+.+.++++ ++|
T Consensus 13 ~~k~IlIlG~G~~-----------g~~la~aa~~~G~~vi~~d~~~~~~~--~~~ad~~~~~~~~d~~~l~~~~~--~~d 77 (389)
T 3q2o_A 13 PGKTIGIIGGGQL-----------GRMMALAAKEMGYKIAVLDPTKNSPC--AQVADIEIVASYDDLKAIQHLAE--ISD 77 (389)
T ss_dssp TTSEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESSTTCTT--TTTCSEEEECCTTCHHHHHHHHH--TCS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCCch--HHhCCceEecCcCCHHHHHHHHH--hCC
Confidence 4579999999965 78999999999999999998887655 56788877655 47788888887 589
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGE 249 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~ 249 (1190)
+|.+.++. .....+. .+++.|+ +|+++++++.++||..++++|+++|||+|++..+++.+++.++++++|
T Consensus 78 vI~~~~e~-~~~~~~~------~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g- 147 (389)
T 3q2o_A 78 VVTYEFEN-IDYRCLQ------WLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELS- 147 (389)
T ss_dssp EEEESCCC-CCHHHHH------HHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC-
T ss_pred Eeeecccc-ccHHHHH------HHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC-
Confidence 99777653 2222222 3555665 789999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCC-CcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCc
Q 001014 250 FPLIIRPAFTLG-GTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGV 328 (1190)
Q Consensus 250 ~PvVVKP~~g~g-g~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~ 328 (1190)
||+||||.++.+ |+|+.++++.+|+.++++... ..+++||+||+|++|+++.++++.+|++.+++..++....++
T Consensus 148 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e~~~~~g~ 223 (389)
T 3q2o_A 148 YPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVAENIHVNNI 223 (389)
T ss_dssp SSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCEEEEEETTE
T ss_pred CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecccCceEEEEEEEEcCCCCEEEecCeeeEEcCCc
Confidence 999999999975 799999999999999987753 348999999999899999999998899888877776654443
Q ss_pred ccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 001014 329 HTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKM 408 (1190)
Q Consensus 329 ~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~ 408 (1190)
. .....|+. ++++..+++++.+.+++++||+. |++++||++++ +|++||+|||||++++.+++.+++|+|++++
T Consensus 224 ~---~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~-G~~~ve~~~~~-dg~~~viEiNpR~~~s~~~~~~~~g~~~~~~ 297 (389)
T 3q2o_A 224 L---HESIVPAR-ITEELSQKAIAYAKVLADELELV-GTLAVEMFATA-DGEIYINELAPRPHNSGHYTQDACETSQFGQ 297 (389)
T ss_dssp E---EEEEESCS-SCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TSCEEEEEEESSCCGGGTTHHHHBSSCHHHH
T ss_pred e---EEEECCCC-CCHHHHHHHHHHHHHHHHHcCCe-eEEEEEEEEeC-CCCEEEEEeeCCCCCchhHHHHHcCCCHHHH
Confidence 3 34457876 99999999999999999999995 99999999997 7889999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCccccCCCCccccCCcC-------eEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHH
Q 001014 409 AAKLSVGYSLDQIPNDITKKTPASFEPSID-------YVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQ 481 (1190)
Q Consensus 409 ~~~~alG~~l~~~~~~i~~~~~~~f~p~~~-------~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ 481 (1190)
++++++|.+|+++... .++.+.+.++ ....+.|.|+++.|..... +.|+++|||+++|+|++||++
T Consensus 298 ~~r~~lg~~l~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~p~~~~~lygk~~~---~~~r~~G~v~~~~~~~~~a~~ 370 (389)
T 3q2o_A 298 HIRAICNLPLGETNLL----KPVVMVNILGEHIEGVLRQVNRLTGCYLHLYGKEEA---KAQRKMGHVNILNDNIEVALE 370 (389)
T ss_dssp HHHHHHTCCCCCCCBC----SCEEEEEEEHHHHHHHHHTGGGCTTEEEEECCCSSC---CTTSEEEEEEEECSSHHHHHH
T ss_pred HHHHHcCCCCCCcccc----CcEEEEEEecCchhhHHHHHHhCCCCEEEECCCCCC---CCCCeeEEEEEEcCCHHHHHH
Confidence 9999999999875431 1221211111 1112456666655544322 347888999999999999999
Q ss_pred HHHHh
Q 001014 482 KALRS 486 (1190)
Q Consensus 482 ka~~~ 486 (1190)
||...
T Consensus 371 ~a~~~ 375 (389)
T 3q2o_A 371 KAKSL 375 (389)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99876
No 10
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=1.6e-41 Score=408.97 Aligned_cols=394 Identities=23% Similarity=0.341 Sum_probs=309.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-C------CCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-P------MTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p------~~~~~v~~i~~ 164 (1190)
++||||+|+|++ +.+++++++++|++|++++++++.......++|+.++. | .+.+.+.++++
T Consensus 2 ~k~ilI~g~g~~-----------~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~ 70 (451)
T 1ulz_A 2 VNKVLVANRGEI-----------AVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLAL 70 (451)
T ss_dssp CSSEEECCCHHH-----------HHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHH
T ss_pred CceEEEECCcHH-----------HHHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCCcccccCCHHHHHHHHH
Confidence 468999999965 67899999999999999988776555556778888754 3 35678999999
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHHHH
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDECIS 242 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~~ 242 (1190)
++++|+|+|+++. ..++... .+.++..|++++|++++++.++.||..++++|+++|||+|++. .+++.+++.+
T Consensus 71 ~~~~d~v~~~~g~-~~e~~~~----~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~ 145 (451)
T 1ulz_A 71 EVGADAIHPGYGF-LAENAEF----AKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKA 145 (451)
T ss_dssp HTTCCEEECCSST-TTTCHHH----HHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHH
T ss_pred HcCCCEEEECCCc-cccCHHH----HHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHH
Confidence 9999999998752 2223222 4467889999999999999999999999999999999999998 7899999999
Q ss_pred HHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEE
Q 001014 243 IANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 243 ~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~ 318 (1190)
+++++| ||+||||..++||+|+.++++.+|+.++++.+... .+...++||+||+|.+|+++.++.+.+|+++.++
T Consensus 146 ~~~~~g-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~ 224 (451)
T 1ulz_A 146 LAREIG-YPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLG 224 (451)
T ss_dssp HHHHHC-SSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEE
T ss_pred HHHHcC-CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCCCCEEEEe
Confidence 999999 99999999999999999999999999999877642 2356899999999978999999998878877654
Q ss_pred eeee-eCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 319 SIEN-VDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 319 ~~e~-~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
.... .. -.........|++.++++..+++.+.+.++++++|+. |++++||++++ +|++||+|||||++++.+++
T Consensus 225 ~~~~~~~---~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~-G~~~ve~~~~~-~g~~~viEiN~R~~~~~~~~ 299 (451)
T 1ulz_A 225 ERDCSIQ---RRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYY-NAGTMEFIADQ-EGNLYFIEMNTRIQVEHPVS 299 (451)
T ss_dssp EEEEEEE---ETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TCCEEEEEEECSCCTTHHHH
T ss_pred eeecccc---cccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCC-cceEEEEEEeC-CCCEEEEEeeCCCCccchHH
Confidence 2110 10 0113345567887799999999999999999999996 99999999997 78899999999999999899
Q ss_pred HHHhCCCHHHHHHHHHcCCCCCCCCcccc--CC---------CC-ccccCCcCeEE-eeece---e--eecccCCCCccc
Q 001014 398 SKATGFPIAKMAAKLSVGYSLDQIPNDIT--KK---------TP-ASFEPSIDYVV-TKIPR---F--AFEKFPGSEPLL 459 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG~~l~~~~~~i~--~~---------~~-~~f~p~~~~v~-~k~p~---~--~~~~~~~~~~~l 459 (1190)
..++|+|++++++++++|.+++.....+. +. .+ ..|.|..+.+. +..|. + ....++|. .+
T Consensus 300 ~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~--~~ 377 (451)
T 1ulz_A 300 EMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGF--EV 377 (451)
T ss_dssp HHHHCCCHHHHHHHHHTTCCCCCCGGGCCCCSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTC--BC
T ss_pred HHHhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEeccccCcccCcCCCCceeceEECCCCCCcccccCccCCC--Ee
Confidence 99999999999999999998873222111 11 11 12445544332 22221 2 22233332 33
Q ss_pred CCCCC-cEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 460 TTQMK-SVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 460 ~~~~~-s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
.+.++ .+|+|++.|+|++||++|+.++++ +.+.|+.+| ...+...|.+|.
T Consensus 378 ~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~~--------i~~~~~~~~~~~ 429 (451)
T 1ulz_A 378 TPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTT--------IPLLINIMKEKD 429 (451)
T ss_dssp CSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEECSSCCS--------HHHHHHHHHCHH
T ss_pred cccccchheEEEEECCCHHHHHHHHHHHHhhcEEeCccCC--------HHHHHHHhCCHH
Confidence 33233 489999999999999999999997 677775444 456777777774
No 11
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-41 Score=407.50 Aligned_cols=393 Identities=20% Similarity=0.278 Sum_probs=310.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-C-------CCCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-T-------PMTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~-------p~~~~~v~~i~ 163 (1190)
++||||+|+|++ +.+++++++++|++|++++++++.......++|..++ . ..+.+.+.+++
T Consensus 1 ~k~ilI~g~g~~-----------~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~ 69 (451)
T 2vpq_A 1 MKKVLIANRGEI-----------AVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIA 69 (451)
T ss_dssp -CEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCCHH-----------HHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 369999999964 6789999999999999998776655545577888775 2 24678999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHHH
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDECI 241 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~ 241 (1190)
+++++|+|+|+++. ..++..+ ...++..|++++|++++++.++.||..++++|+++|||+|++. .+++.+++.
T Consensus 70 ~~~~~d~v~~~~g~-~~e~~~~----~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~ 144 (451)
T 2vpq_A 70 TSTGCDGVHPGYGF-LAENADF----AELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAK 144 (451)
T ss_dssp HHTTCSEEECCSST-TTTCHHH----HHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHH
T ss_pred HHcCCCEEEECCCc-cccCHHH----HHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHH
Confidence 99999999998762 2222222 4567889999999999999999999999999999999999977 889999999
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
+++++++ ||+||||..++||+|+.++++.+|+.++++.+... ++...++||+||+|.+|+++.++++.+|+++.+
T Consensus 145 ~~~~~~g-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~ 223 (451)
T 2vpq_A 145 KIAKKIG-YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHL 223 (451)
T ss_dssp HHHHHHC-SSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTTSCEEEE
T ss_pred HHHHhcC-CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCCCCEEEE
Confidence 9999999 99999999999999999999999999999877542 234689999999997799999999887887665
Q ss_pred Ee----eeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 318 CS----IENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 318 ~~----~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
.. .... + .......|++.++++..+++.+.+.++++++|+. |++++||++++++|++||+|||||++++
T Consensus 224 ~~~~~~~~~~-----~-~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~-G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 224 GERDCTIQRR-----M-QKLVEEAPSPILDDETRREMGNAAVRAAKAVNYE-NAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp EEEEEEEEET-----T-EEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred eccccchhcc-----c-cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 42 2221 1 3345668887799999999999999999999997 9999999999437889999999999999
Q ss_pred hHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc--CC---------CC-ccccCCcCeEE-eeec-----eeeecccCCC
Q 001014 394 SALASKATGFPIAKMAAKLSVGYSLDQIPNDIT--KK---------TP-ASFEPSIDYVV-TKIP-----RFAFEKFPGS 455 (1190)
Q Consensus 394 ~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~--~~---------~~-~~f~p~~~~v~-~k~p-----~~~~~~~~~~ 455 (1190)
.+++..++|+|++++++++++|.+++..+.++. +. .+ ..|.|..+.+. +.+| ++.+..++|.
T Consensus 297 ~~~~~~~~g~dl~~~~~~~~~G~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~ 376 (451)
T 2vpq_A 297 HPVTEMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNY 376 (451)
T ss_dssp HHHHHHHHCCCHHHHHHHHHTTCCCSCCGGGCCCCSEEEEEEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCCCTTC
T ss_pred eehhhHHhCCCHHHHHHHHHCCCCCCCcccccCcCceEeeeEeeeeccccccCCCCCEEeEEECCCCCCcccccccccCC
Confidence 999999999999999999999998864322221 11 11 12455555442 3344 3444444443
Q ss_pred CcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 456 EPLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 456 ~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
... .....++|+|++.|+|++||++|+.++++ +.+.|+.+| .+.+...|.+|.
T Consensus 377 ~~~-~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~~--------~~~~~~~~~~~~ 430 (451)
T 2vpq_A 377 TIP-PYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTT--------IPFHIKLLNNDI 430 (451)
T ss_dssp BCC-TTTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCS--------HHHHHHHHTCHH
T ss_pred ccC-cccccccEEEEEEeCCHHHHHHHHHHHHhccEEeCcCCC--------HHHHHHHhCCHh
Confidence 221 12223599999999999999999999997 677776544 456777777764
No 12
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.9e-43 Score=439.78 Aligned_cols=398 Identities=20% Similarity=0.287 Sum_probs=269.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-C-------CCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-T-------PMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~-------p~~~~~v~~i 162 (1190)
|++||||+|+|++ +.+++++++++|+++++++++++..+.+..++|+.+. . .++.+.+.++
T Consensus 1 m~~kiLIanrGei-----------a~riiraar~lGi~~vav~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~ 69 (681)
T 3n6r_A 1 MFNKILIANRGEI-----------ACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAA 69 (681)
T ss_dssp -CCCBCBSCCHHH-----------HHHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHH
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHcCCEEEEEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 3579999999976 6799999999999999998888877777788998764 2 2477899999
Q ss_pred HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHH
Q 001014 163 LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDEC 240 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~ 240 (1190)
+++.++|+|+|+++. ..++... ...+++.|++++||++++++.+.||..+|++|+++|+|+|++. .+.+.+++
T Consensus 70 a~~~~~daI~pg~gf-lsE~~~~----a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~ 144 (681)
T 3n6r_A 70 IRATGAQAVHPGYGF-LSENSKF----AEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEA 144 (681)
T ss_dssp HHHTCCSCCBCCSSS-STTCHHH----HHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-----------
T ss_pred HHHhCcCEEEECCCc-cccCHHH----HHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHH
Confidence 999999999999863 2333322 4578889999999999999999999999999999999999975 78889999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.++++++| ||+||||..++||+|++++++.+|+.++++.+... +++..++||+||+|.+|++++++.|++|+++.
T Consensus 145 ~~~a~~ig-yPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~ 223 (681)
T 3n6r_A 145 VKISNQIG-YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIY 223 (681)
T ss_dssp -----------------------------------------------------------CCSCEEEEEEEECCSSSCCEE
T ss_pred HHHHHhcC-CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCCCCEEE
Confidence 99999999 99999999999999999999999999999876643 23568999999999889999999998888888
Q ss_pred EEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHH
Q 001014 317 ICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSAL 396 (1190)
Q Consensus 317 ~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l 396 (1190)
+...+.. ..-.....+..+|++.++++..+++.+.+.++++++|++ |++++||++++ +|++||+|||||+++++++
T Consensus 224 l~~rd~s--~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vEf~~d~-dg~~~~lEiNpR~~~~~~~ 299 (681)
T 3n6r_A 224 LGERECS--IQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYA-SAGTVEFIVDG-QKNFYFLEMNTRLQVEHPV 299 (681)
T ss_dssp EEEEECC--CEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCC-SEEEEEEEECT-TSCCCCCEEECSCCTTHHH
T ss_pred Eeeeecc--eeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceEEEEEEEeC-CCCEEEEecccccCCCcHH
Confidence 7543310 000124566778998899999999999999999999997 99999999997 7889999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCC-ccccCCcCeEE-eeece------------e----
Q 001014 397 ASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTP-ASFEPSIDYVV-TKIPR------------F---- 447 (1190)
Q Consensus 397 ~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~-~~f~p~~~~v~-~k~p~------------~---- 447 (1190)
++.++|+|++++++++++|.+++..+.++. .++| ..|.|+.+.+. +..|. |
T Consensus 300 te~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~ 379 (681)
T 3n6r_A 300 TELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDA 379 (681)
T ss_dssp HHHHHTCCHHHHHHHHHTSCCCSSCTTTCCCCSEEEEEEEESEEGGGTTEECCEECSCEECCCC----------------
T ss_pred hHHHhCCCHHHHHHHHHCCCCCCCCccccceeEEEEEEEEecCCcccccCCCCcEEEEEECCCCCccccccccccccccc
Confidence 999999999999999999999875543332 2333 34778777543 23332 1
Q ss_pred -------eecccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 448 -------AFEKFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 448 -------~~~~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
..+........+.+.+++ +|++++.|.|++||++|+.++|+ +.+.|+.+| .+.|...|.||.
T Consensus 380 ~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~~i~g~~tn--------~~~~~~~~~~~~ 450 (681)
T 3n6r_A 380 PSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGIGHN--------LPFLSAVMDHPK 450 (681)
T ss_dssp ----CCEEEEESCCTTCEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHCEECSSCCS--------HHHHHHHHHCHH
T ss_pred ccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcCEEECccCC--------HHHHHHHhCCHh
Confidence 111111223355566666 99999999999999999999996 788887655 678888888885
No 13
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=5.4e-41 Score=405.25 Aligned_cols=381 Identities=23% Similarity=0.340 Sum_probs=301.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC---------CCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP---------MTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p---------~~~~~v~~ 161 (1190)
+++||||+|+|++ +.+++++++++|++|++++++++..+.+...+|..|..+ .+.+.+.+
T Consensus 5 ~~k~ILI~g~g~~-----------~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~ 73 (461)
T 2dzd_A 5 RIRKVLVANRGEI-----------AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIE 73 (461)
T ss_dssp CCSEEEECSCHHH-----------HHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHH
T ss_pred cCcEEEEECCcHH-----------HHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHH
Confidence 4579999999864 678999999999999999988877666667788877533 46789999
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHH
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDE 239 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e 239 (1190)
+++++++|+|+|+++ ...++..+ ...++..|++++|++++++.++.||..++++|+++|||+|++. .+++.++
T Consensus 74 ~~~~~~id~v~~~~g-~~~E~~~~----~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~ 148 (461)
T 2dzd_A 74 IAKAHDVDAIHPGYG-FLSENIQF----AKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLED 148 (461)
T ss_dssp HHHHTTCCEEECCSS-SSTTCHHH----HHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHH
T ss_pred HHHHhCCCEEEECCC-ccccCHHH----HHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHH
Confidence 999999999999874 22233322 3468889999999999999999999999999999999999997 7899999
Q ss_pred HHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 240 CISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 240 ~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
+.++++++| ||+||||..++||+|+.++++.+|+.++++.+... ++...++|||||+|.+|+++.++.+.+|+++
T Consensus 149 ~~~~~~~~g-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~ 227 (461)
T 2dzd_A 149 VVAFAEAHG-YPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIV 227 (461)
T ss_dssp HHHHHHHHC-SCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTTCCEE
T ss_pred HHHHHHhcC-CcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCCCCEE
Confidence 999999999 99999999999999999999999999999877642 3356899999999978999999998888877
Q ss_pred EEE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCC
Q 001014 316 IIC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 316 ~~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~ 391 (1190)
.+. +.++. ........|+..++++..+++.+.+.++++++|+. |.+++||++++ +++||+|||||++
T Consensus 228 ~~~~~~~~~~~~------~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~-g~~~ve~~~~~--~~~~viEiN~R~~ 298 (461)
T 2dzd_A 228 HLYERDCSVQRR------HQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYV-NAGTVEFLVSG--DEFYFIEVNPRIQ 298 (461)
T ss_dssp EEEEEEEEEEET------TEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEEET--TEEEEEEEESSCC
T ss_pred EEEecccccccc------ccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCC-cceEEEEEEeC--CCEEEEEEECCCC
Confidence 543 22221 13455678986699999999999999999999996 99999999994 7899999999999
Q ss_pred CchHHHHHHhCCCHHHHHHHHHcCCCCCCCCccc------c--C---------CCC-ccccCCcCeEE-eeec---eeee
Q 001014 392 RSSALASKATGFPIAKMAAKLSVGYSLDQIPNDI------T--K---------KTP-ASFEPSIDYVV-TKIP---RFAF 449 (1190)
Q Consensus 392 gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i------~--~---------~~~-~~f~p~~~~v~-~k~p---~~~~ 449 (1190)
++++++..++|+|+++.++++++|.+++.....+ . + ..+ ..|.|..+.+. ...| ...+
T Consensus 299 ~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~ 378 (461)
T 2dzd_A 299 VEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRL 378 (461)
T ss_dssp GGGHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESEEGGGTTEECCEECSEEECCCCTTEEE
T ss_pred CceeeEEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeecccCCccCccCCCCeeeEEecCCCCCeEe
Confidence 9988999999999999999999999988642111 0 1 011 11445443221 1111 0111
Q ss_pred c-ccCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCC
Q 001014 450 E-KFPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCS 497 (1190)
Q Consensus 450 ~-~~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~ 497 (1190)
. .....+.++.+..++ +|+|++.|+|++||+++|.++++ +.+.|+.+|
T Consensus 379 ~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~~ 429 (461)
T 2dzd_A 379 DAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIRGIKTN 429 (461)
T ss_dssp EESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCS
T ss_pred ecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEEeCCcCC
Confidence 1 111222333444444 89999999999999999999997 677777443
No 14
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=1.7e-41 Score=402.13 Aligned_cols=360 Identities=17% Similarity=0.193 Sum_probs=296.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d 169 (1190)
+.+||||+|+|++ |++++++++++|++|++++++++.+. ..++|..++.++ |.+.+.++++ ++|
T Consensus 34 ~~~~IlIlG~G~l-----------g~~~~~aa~~lG~~v~v~d~~~~~p~--~~~ad~~~~~~~~d~~~l~~~a~--~~D 98 (419)
T 4e4t_A 34 PGAWLGMVGGGQL-----------GRMFCFAAQSMGYRVAVLDPDPASPA--GAVADRHLRAAYDDEAALAELAG--LCE 98 (419)
T ss_dssp TTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECSCTTCHH--HHHSSEEECCCTTCHHHHHHHHH--HCS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEECCCCcCch--hhhCCEEEECCcCCHHHHHHHHh--cCC
Confidence 4579999999975 78999999999999999998877654 577888887665 7888999884 799
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH---
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE--- 246 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~--- 246 (1190)
+|++.++... ... ...+++. .++||+++++++++||..+|++|+++|||+|++..+++.+++.+++++
T Consensus 99 ~V~~~~e~~~-~~~------~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~ 169 (419)
T 4e4t_A 99 AVSTEFENVP-AAS------LDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALD 169 (419)
T ss_dssp EEEECCTTCC-HHH------HHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHH
T ss_pred EEEEccCcCC-HHH------HHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcc
Confidence 9998876432 111 1234554 488999999999999999999999999999999999999999887777
Q ss_pred -cCCCcEEEecC-CCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeC
Q 001014 247 -IGEFPLIIRPA-FTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVD 324 (1190)
Q Consensus 247 -ig~~PvVVKP~-~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~ 324 (1190)
+ ||+||||+ .|++|+|+.+++|.+|+.++++.+ ...+++||+||+|.+|+++.++++.+|++.+++..++..
T Consensus 170 ~~--~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~~~e~~~ 243 (419)
T 4e4t_A 170 AV--LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNVH 243 (419)
T ss_dssp TT--CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEEEEEEEEEECTTSCEEECCCEEEEE
T ss_pred cc--CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEeCeEEEe
Confidence 6 89999999 899999999999999999998764 356899999999669999999999889888887777664
Q ss_pred CCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCC
Q 001014 325 PMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFP 404 (1190)
Q Consensus 325 ~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~ 404 (1190)
..++. .....|++.++++..+++++++.+++++||+. |+++|||++++ +|++||+|||||++++.+++..++|+|
T Consensus 244 ~~g~~---~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~-G~~~vE~~~~~-dG~~~v~EiNpR~~~sg~~t~~~~~~s 318 (419)
T 4e4t_A 244 HNGIL---ALTIVPAPAADTARVEEAQQAAVRIADTLGYV-GVLCVEFFVLE-DGSFVANEMAPRPHNSGHYTVDACATS 318 (419)
T ss_dssp ETTEE---EEEEESCTTCCHHHHHHHHHHHHHHHHHHTCC-EEEEEEEEEET-TCCEEEEEEESSCCGGGTTHHHHBSSC
T ss_pred eCCeE---EEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCe-eEEEEEEEEeC-CCCEEEEEEeCCCCCCCCeEeeccCCC
Confidence 32321 22367887799999999999999999999995 99999999997 788999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCccccCCCCcc----cc-------CCcC--eEEeeeceeeecccCCCCcccCCCCCcEEEEEE
Q 001014 405 IAKMAAKLSVGYSLDQIPNDITKKTPAS----FE-------PSID--YVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMA 471 (1190)
Q Consensus 405 l~~~~~~~alG~~l~~~~~~i~~~~~~~----f~-------p~~~--~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a 471 (1190)
++++++++++|++++++.....+..... +. +... ..+.+.|.|.++.|.+...+.+++| |||++
T Consensus 319 ~~~~~~ra~~G~pl~~~~~~~~~~m~n~lg~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~ygk~~~~~~rkm---Ghv~~ 395 (419)
T 4e4t_A 319 QFEQQVRAMTRMPLGNPRQHSPAAMLNILGDVWFPNGAAAGAVTPPWDTVAAMPAAHLHLYGKEEARVGRKM---GHVNF 395 (419)
T ss_dssp HHHHHHHHHTTCCCCCCCBCSCEEEEEEEGGGGCTTCGGGCCCCCCHHHHHTSTTEEEEECCCSCCCTTCEE---EEEEE
T ss_pred HHHHHHHHHcCCCCCCccccCCeEEEEEecCccccccccccccchHHHHHHhCCCCEEEECCCCCCCCCCce---EEEEE
Confidence 9999999999999987643211100000 00 0111 1224689999999987766777766 99999
Q ss_pred EeCCHHHHHHHHHHhhh
Q 001014 472 LGRTFQESFQKALRSLE 488 (1190)
Q Consensus 472 ~G~~~~ea~~ka~~~l~ 488 (1190)
.|+|.++|+++|.++.+
T Consensus 396 ~~~~~~~~~~~a~~~~~ 412 (419)
T 4e4t_A 396 TAEMRDDAVAAATACAQ 412 (419)
T ss_dssp ECSSHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHH
Confidence 99999999999998875
No 15
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=100.00 E-value=1.2e-40 Score=400.95 Aligned_cols=393 Identities=22% Similarity=0.280 Sum_probs=306.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-C-------CCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-P-------MTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p-------~~~~~v~~i~ 163 (1190)
++||||+|+|++ +.+++++++++|+++++++++++..+....++|..++. | .+.+.+.+++
T Consensus 2 ~k~ilI~g~g~~-----------~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~ 70 (449)
T 2w70_A 2 LDKIVIANRGEI-----------ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAA 70 (449)
T ss_dssp CSEEEECCCHHH-----------HHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCcHH-----------HHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 579999999964 67899999999999999987665544456778887753 2 4678999999
Q ss_pred HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHH-
Q 001014 164 EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDEC- 240 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~- 240 (1190)
+++++|+|+|+++. ..++... ...++..|++++|++++++.++.||..++++|+++|||+|++. .+++.+++
T Consensus 71 ~~~~~d~v~~~~g~-~~e~~~~----~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~ 145 (449)
T 2w70_A 71 EITGAVAIHPGYGF-LSENANF----AEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKN 145 (449)
T ss_dssp HHHTCCEEECCSST-TTTCHHH----HHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHH
T ss_pred HHcCCCEEEECCCC-cccCHHH----HHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHH
Confidence 99999999998752 2222222 4568889999999999999999999999999999999999997 88899999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.+++++++ ||+||||..++||+|+.+++|.+|+.++++.+... ++...++||+||+|.+|++++++.+.+|+++.
T Consensus 146 ~~~~~~~g-~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~ 224 (449)
T 2w70_A 146 RAIAKRIG-YPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIY 224 (449)
T ss_dssp HHHHHHHC-SSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEE
T ss_pred HHHHHHhC-CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCCCCEEE
Confidence 88889999 99999999999999999999999999999877542 22468999999998789999999988788876
Q ss_pred EEeee-eeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchH
Q 001014 317 ICSIE-NVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA 395 (1190)
Q Consensus 317 ~~~~e-~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~ 395 (1190)
++... .... .........|++.++++..+++.+.+.++++++|+. |++++||++++ +++||+|||||++++.+
T Consensus 225 ~~~~~~~~~~---~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~-G~~~ve~~~~~--~~~~viEiN~R~~~~~~ 298 (449)
T 2w70_A 225 LAERDCSMQR---RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYR-GAGTFEFLFEN--GEFYFIEMNTRIQVEHP 298 (449)
T ss_dssp EEEEEEEEEE---TTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCC-EEEEEEEEEET--TEEEEEEEECSCCTTHH
T ss_pred Eeceeccccc---CCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCC-ceEEEEEEEEC--CCEEEEEEECCCCccch
Confidence 54211 0100 012345568887799999999999999999999996 99999999994 78999999999999998
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCCccccCCcCeEE-eeecee-----eecccCCCCcc
Q 001014 396 LASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTPASFEPSIDYVV-TKIPRF-----AFEKFPGSEPL 458 (1190)
Q Consensus 396 l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~~~f~p~~~~v~-~k~p~~-----~~~~~~~~~~~ 458 (1190)
++..++|+|++++++++++|.+++....++. +..+..|.|..+.+. +..|.+ ....++|. .
T Consensus 299 ~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~~~~~~~~g~--~ 376 (449)
T 2w70_A 299 VTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGY--T 376 (449)
T ss_dssp HHHHHHCCCHHHHHHHHHHTCCCSSCGGGCCCCSEEEEEEEECBCTTTCCBCCEECCEEECCCSTTEEEECCCCTTC--E
T ss_pred HHHHHhCCCHHHHHHHHHCCCCCCCchhccccceeEEEEeecccCccccCCCCCEeceEECCCCCcEEEEeccccCC--E
Confidence 9999999999999999999998863222111 111122344433221 222321 22223332 2
Q ss_pred cCC-CCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 459 LTT-QMKSVGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 459 l~~-~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+.+ ...++|+|++.|+|++||++++.++++ +.+.|+.+| ...|...|.+|.
T Consensus 377 ~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~~--------i~~~~~~~~~~~ 429 (449)
T 2w70_A 377 VPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTN--------VDLQIRIMNDEN 429 (449)
T ss_dssp ECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCS--------HHHHHHHHTCHH
T ss_pred eccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEEeCcCCC--------HHHHHHHHcChh
Confidence 222 233489999999999999999999997 677775443 556777787775
No 16
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=100.00 E-value=1.1e-41 Score=443.03 Aligned_cols=396 Identities=17% Similarity=0.268 Sum_probs=264.8
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-C-------CCHHHHHH
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-P-------MTPELVEQ 161 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p-------~~~~~v~~ 161 (1190)
.|++||||+|+|++ +++++++|+++|+++++++++++..+.+..++|+.+.. | .+.+.+.+
T Consensus 29 ~m~kkILI~grGei-----------a~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~ 97 (1236)
T 3va7_A 29 KPFETVLIANRGEI-----------AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIIN 97 (1236)
T ss_dssp CSCSEEEECCCHHH-----------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHH
T ss_pred CCCCEEEEEcCCHH-----------HHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHH
Confidence 45689999999976 67999999999999999998888777777889988853 2 47789999
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC-eeecCCHHHH
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP-SGIGNTLDEC 240 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~-~~~v~s~~e~ 240 (1190)
+++++++|+|+|+++ ...++... ...+++.|++++|+++++++++.||..+|++|+++|||+|+ +..+.+.+++
T Consensus 98 ~a~~~~iDaI~pg~g-~lsEn~~~----a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s~eea 172 (1236)
T 3va7_A 98 AAKKTGAQAIIPGYG-FLSENADF----SDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEA 172 (1236)
T ss_dssp HHHHTTCSEEECCSS-GGGGCHHH----HHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-----------
T ss_pred HHHHhCCCEEEECCc-cccccHHH----HHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCCHHHH
Confidence 999999999999985 34444433 45788999999999999999999999999999999999988 4788899999
Q ss_pred HHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEE
Q 001014 241 ISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVI 316 (1190)
Q Consensus 241 ~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~ 316 (1190)
.++++++| ||+||||..++||+|+++|+|.+|+.++++.+... +.+..++|||||+|.+|++++++.|++|+++.
T Consensus 173 ~~~a~~iG-yPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~ 251 (1236)
T 3va7_A 173 KEVAKKLE-YPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIA 251 (1236)
T ss_dssp -------------------------------------------------------------CCEEEEEEEEEESSSCEEE
T ss_pred HHHHHHcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCCceEEE
Confidence 99999999 99999999999999999999999999999876542 34568999999999899999999999988887
Q ss_pred E----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCC
Q 001014 317 I----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSR 392 (1190)
Q Consensus 317 ~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~g 392 (1190)
+ |+.++.+ +..+..+|++.++++..+++.+.+.++++++|++ |++++||+++++++++||||||||+++
T Consensus 252 l~~rd~s~qr~~------~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~-G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 252 IGERDCSLQRRN------QKVIEETPAPNLPEATRAKMRAASERLGSLLKYK-CAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp EEEEEEEEEETT------EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCE-EEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred EeeeeeeeeecC------cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 7 4444433 5667789998899999999999999999999997 999999999975589999999999999
Q ss_pred chHHHHHHhCCCHHHHHHHHHcCCCCCCCCcccc-----------CCCC-ccccCCcCeEE-eeecee-eecccCCCCcc
Q 001014 393 SSALASKATGFPIAKMAAKLSVGYSLDQIPNDIT-----------KKTP-ASFEPSIDYVV-TKIPRF-AFEKFPGSEPL 458 (1190)
Q Consensus 393 s~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~-----------~~~~-~~f~p~~~~v~-~k~p~~-~~~~~~~~~~~ 458 (1190)
++++++.++|+|++++++++++|.+++..+..+. .+++ ..|.|..+.+. +..|.+ ..+........
T Consensus 325 ~~~~te~vtGvDlv~~~l~~a~G~~l~~~~~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~gvrvd~~v~~G~~ 404 (1236)
T 3va7_A 325 EHPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPSWARVDTWVKKGTN 404 (1236)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCGGGCCCCCCSEEEEEEEESEETTTTTEECCEECCEEECCTTSEEEECCCTTCE
T ss_pred ccHHHHHHHCCCHHHHHHHHHCCCCCCCccccccccceEEEEEEecCCcccccCCCCceEEEEEcCCccEecccccCCCE
Confidence 9999999999999999999999998864322221 1222 23556554332 222211 11111122334
Q ss_pred cCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 459 LTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 459 l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+...+++ +|+|++.|+|++||++|+.++++ +.+.|+.+| .+.|.+.|.||.
T Consensus 405 V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~i~G~~tn--------~~~~~~~~~~~~ 457 (1236)
T 3va7_A 405 VSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITN--------IDYLRSIASSKM 457 (1236)
T ss_dssp ECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCS--------HHHHHHHHHCHH
T ss_pred eCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEEEeCcccC--------HHHHHHHhCCHH
Confidence 4444444 89999999999999999999997 777886554 677888888875
No 17
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=8e-41 Score=395.26 Aligned_cols=352 Identities=12% Similarity=0.124 Sum_probs=287.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCc--ceee-cCCcHHHHHHHhhhcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSD--RLYF-EPLTVEDVLNVIDLER 718 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad--~~~~-~p~~~e~v~~i~~~~~ 718 (1190)
+.+||+|||+|+. +.+++++++++|+++++++ +++.+... ++| ..+. ...+.+.+.++++.
T Consensus 23 ~~~~I~ilGgG~l-----------g~~l~~aa~~lG~~v~~~d-~~~~p~~~--~ad~~~~~~~~~~d~~~l~~~a~~-- 86 (403)
T 3k5i_A 23 NSRKVGVLGGGQL-----------GRMLVESANRLNIQVNVLD-ADNSPAKQ--ISAHDGHVTGSFKEREAVRQLAKT-- 86 (403)
T ss_dssp SCCEEEEECCSHH-----------HHHHHHHHHHHTCEEEEEE-STTCTTGG--GCCSSCCEESCTTCHHHHHHHHTT--
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEE-CCCCcHHH--hccccceeecCCCCHHHHHHHHHh--
Confidence 4689999999984 6677999999999999999 77666544 566 3333 34568889999865
Q ss_pred CCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeec--CHH
Q 001014 719 PEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAK--SEA 796 (1190)
Q Consensus 719 ~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~--s~~ 796 (1190)
+|.|++.++.. +..++..|+ + | ++ ++|+++++.+++||..++++|+++|||+|++..+. +.+
T Consensus 87 ~d~i~~e~e~~-~~~~l~~l~----------~-g---~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~ 150 (403)
T 3k5i_A 87 CDVVTAEIEHV-DTYALEEVA----------S-E---VK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPA 150 (403)
T ss_dssp CSEEEESSSCS-CHHHHHHHT----------T-T---SE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHH
T ss_pred CCEEEECCCCC-CHHHHHHHH----------c-C---Cc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHH
Confidence 67777655544 335667777 7 8 87 88999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEe
Q 001014 797 DALAIAKEIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 797 e~~~~~~~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~ 875 (1190)
++.++++++|||+||||..++ +|+|+.+++|.+|+.++++.+ ...+++||+||++++|++|.+++|++| +..++
T Consensus 151 ~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~E~sv~v~~~~~g-~~~~p 225 (403)
T 3k5i_A 151 ELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL----KDRPLYAEKWAYFKMELAVIVVKTKDE-VLSYP 225 (403)
T ss_dssp HHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT----TTSCEEEEECCCEEEEEEEEEEECSSC-EEECC
T ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc----CCCcEEEecCCCCCeEEEEEEEEcCCC-EEEeC
Confidence 999999999999999999987 999999999999999998863 357899999996689999999999888 77777
Q ss_pred eeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcc
Q 001014 876 IMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKA 955 (1190)
Q Consensus 876 i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~ 955 (1190)
+.++....+.. .....|+..++++..+++++++.+++++||++|++++||+++.+|++||+|+|||++++.+++..+
T Consensus 226 ~~~~~~~~g~~---~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~ 302 (403)
T 3k5i_A 226 TVETVQEDSIC---KLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEG 302 (403)
T ss_dssp CEEEEEETTEE---EEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHHH
T ss_pred CeeeEEeCCEE---EEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeeee
Confidence 77777654432 223346655999999999999999999999999999999998788999999999999998888899
Q ss_pred cCCCHHHHHHHHHcCCCCCCCCCCccccCCeeE--EeeccC---------CCcccCCCceee-CC----cccccceeeee
Q 001014 956 IGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVS--VKEAVL---------PFEKFQGCDVLL-GP----EMRSTGEVMGI 1019 (1190)
Q Consensus 956 ~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~--vk~~~~---------~~~~~~~~~~~l-g~----~~rs~G~v~~~ 1019 (1190)
+|+|++++++++++|.|+++...... ..... +-..-. .....|+++.++ |+ +.|+||||+.+
T Consensus 303 ~~~s~~~~~~ra~~G~pl~~~~~~~~--~~a~m~nilg~~~~~~~~~~~~~~~~~p~~~~~~ygk~~~~~~rkmGhv~~~ 380 (403)
T 3k5i_A 303 CALSQFDAHLRAILDLPIPAQSLEIR--QPSIMLNIIGGAAPDTHLQAAECALSIPNASIHLYSKGAAKPGRKMGHITVT 380 (403)
T ss_dssp BSSCHHHHHHHHHTTCCCCGGGGSBS--SCEEEEEEECCSSSSHHHHHHHHHTTSTTEEEEECCCCSCCTTCEEEEEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCcccccCC--CcEEEEEEecCCccccchhHHHHHhcCCCCEEEECCCCCCCCCCeeEEEEEE
Confidence 99999999999999999986532110 00111 100000 122468888887 77 57889999999
Q ss_pred eCCHHHHHHHHHHHcC
Q 001014 1020 DMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1020 g~~~~eA~~ka~~~~~ 1035 (1190)
|+|.++|.++|..+..
T Consensus 381 ~~~~~~~~~~a~~~~~ 396 (403)
T 3k5i_A 381 APTMHEAETHIQPLID 396 (403)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999988753
No 18
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=1.5e-40 Score=392.94 Aligned_cols=358 Identities=15% Similarity=0.201 Sum_probs=291.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcc--eEEECC-CCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD--RTYITP-MTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~i~p-~~~~~v~~i~~~~~~ 168 (1190)
.+||||+|+|++ |++++++++++|++|++++ +++.+. .+++| ..+..+ .+.+.+.++++ ++
T Consensus 24 ~~~I~ilGgG~l-----------g~~l~~aa~~lG~~v~~~d-~~~~p~--~~~ad~~~~~~~~~~d~~~l~~~a~--~~ 87 (403)
T 3k5i_A 24 SRKVGVLGGGQL-----------GRMLVESANRLNIQVNVLD-ADNSPA--KQISAHDGHVTGSFKEREAVRQLAK--TC 87 (403)
T ss_dssp CCEEEEECCSHH-----------HHHHHHHHHHHTCEEEEEE-STTCTT--GGGCCSSCCEESCTTCHHHHHHHHT--TC
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEE-CCCCcH--HHhccccceeecCCCCHHHHHHHHH--hC
Confidence 469999999964 7899999999999999999 776655 46676 445444 47788888887 58
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecC--CHHHHHHHHHH
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGN--TLDECISIANE 246 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~--s~~e~~~~~~~ 246 (1190)
|+|++.++.... .. ...|++ |++ +||+++++++++||..+|++|+++|||+|++..+. +.+++.+++++
T Consensus 88 d~i~~e~e~~~~-~~------l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~ 158 (403)
T 3k5i_A 88 DVVTAEIEHVDT-YA------LEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQ 158 (403)
T ss_dssp SEEEESSSCSCH-HH------HHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHH
T ss_pred CEEEECCCCCCH-HH------HHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHH
Confidence 999887764321 11 134666 888 88999999999999999999999999999999999 99999999999
Q ss_pred cCCCcEEEecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 247 IGEFPLIIRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 247 ig~~PvVVKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
+| ||+||||..++ +|+|+.++++.+|+.++++.+ ...+++||+||+|.+|+++.++++.+| +..++..++...
T Consensus 159 ~g-~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~E~sv~v~~~~~g-~~~~p~~~~~~~ 232 (403)
T 3k5i_A 159 LG-YPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL----KDRPLYAEKWAYFKMELAVIVVKTKDE-VLSYPTVETVQE 232 (403)
T ss_dssp HC-SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT----TTSCEEEEECCCEEEEEEEEEEECSSC-EEECCCEEEEEE
T ss_pred hC-CCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc----CCCcEEEecCCCCCeEEEEEEEEcCCC-EEEeCCeeeEEe
Confidence 99 99999999886 999999999999999998764 256899999999559999999998877 555555554432
Q ss_pred CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCH
Q 001014 326 MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPI 405 (1190)
Q Consensus 326 ~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l 405 (1190)
.++ ......|++.++++..+++++.+.+++++||+. |++++||++++ +|++||+|||||++++.+++..++|+|+
T Consensus 233 ~g~---~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~-G~~~ve~~~~~-dg~~~v~EiNpR~~~sg~~~~~~~~~s~ 307 (403)
T 3k5i_A 233 DSI---CKLVYAPARNVSDAINQKAQELARKAVAAFDGK-GVFGVEMFLLE-DDSIMLCEIASRIHNSGHYTIEGCALSQ 307 (403)
T ss_dssp TTE---EEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCS-EEEEEEEEEET-TSCEEEEEEESSCCGGGTTHHHHBSSCH
T ss_pred CCE---EEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCe-eEEEEEEEEeC-CCcEEEEEeecCCCCCCceeeeecCCCH
Confidence 222 234567887799999999999999999999995 99999999997 7889999999999999888889999999
Q ss_pred HHHHHHHHcCCCCCCCCccccCCCC-cccc----C--CcC--eEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCH
Q 001014 406 AKMAAKLSVGYSLDQIPNDITKKTP-ASFE----P--SID--YVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTF 476 (1190)
Q Consensus 406 ~~~~~~~alG~~l~~~~~~i~~~~~-~~f~----p--~~~--~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~ 476 (1190)
+++++++++|+|+++......+... ..+. + ..+ ..+.++|.|.++.|.+...+.+++| |||+++|+|.
T Consensus 308 ~~~~~ra~~G~pl~~~~~~~~~~a~m~nilg~~~~~~~~~~~~~~~~~p~~~~~~ygk~~~~~~rkm---Ghv~~~~~~~ 384 (403)
T 3k5i_A 308 FDAHLRAILDLPIPAQSLEIRQPSIMLNIIGGAAPDTHLQAAECALSIPNASIHLYSKGAAKPGRKM---GHITVTAPTM 384 (403)
T ss_dssp HHHHHHHHTTCCCCGGGGSBSSCEEEEEEECCSSSSHHHHHHHHHTTSTTEEEEECCCCSCCTTCEE---EEEEEECSSH
T ss_pred HHHHHHHHcCCCCCcccccCCCcEEEEEEecCCccccchhHHHHHhcCCCCEEEECCCCCCCCCCee---EEEEEEcCCH
Confidence 9999999999999876432211000 0000 0 000 1134689999999988777777777 9999999999
Q ss_pred HHHHHHHHHhhh
Q 001014 477 QESFQKALRSLE 488 (1190)
Q Consensus 477 ~ea~~ka~~~l~ 488 (1190)
+||++||.++++
T Consensus 385 ~~~~~~a~~~~~ 396 (403)
T 3k5i_A 385 HEAETHIQPLID 396 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
No 19
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=3.2e-41 Score=438.55 Aligned_cols=393 Identities=22% Similarity=0.297 Sum_probs=315.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC---------CCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP---------MTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p---------~~~~~v~~ 161 (1190)
+++||||+|+|++ +.+++++|+++|+++++++++++..+.+...+|+.|..| ++.+.+.+
T Consensus 3 ~~kkVLIagrGei-----------a~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~ 71 (1150)
T 3hbl_A 3 QIKKLLVANRGEI-----------AIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIID 71 (1150)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHH
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHH
Confidence 4679999999976 568999999999999999999988888888999998542 35789999
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHH
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDE 239 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e 239 (1190)
++++.++|+|+|+++. ..++... ...+++.|++++||++++++++.||..+|++|+++|||+|++. .+.+.++
T Consensus 72 ~a~~~~~DaI~pg~gf-lsE~~~~----a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~ee 146 (1150)
T 3hbl_A 72 VAKQANVDAIHPGYGF-LSENEQF----ARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYEL 146 (1150)
T ss_dssp HHHHTTCSEEECTTTT-STTCHHH----HHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSST
T ss_pred HHHHhCCCEEEECCCc-ccccHHH----HHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHH
Confidence 9999999999999763 2233322 4468889999999999999999999999999999999999998 7889999
Q ss_pred HHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 240 CISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 240 ~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
+.++++++| ||+||||+.|+||+|+++|++.+||.++++.+.... ++..++||+||+|.+|++++++.|.+|+++
T Consensus 147 a~~~a~~iG-yPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G~vv 225 (1150)
T 3hbl_A 147 AKEFAEEAG-FPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIV 225 (1150)
T ss_dssp TTTTGGGTC-SSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSSCEE
T ss_pred HHHHHHHcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCCCEE
Confidence 988899999 999999999999999999999999999998765432 256899999999988999999999989888
Q ss_pred EEE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCC
Q 001014 316 IIC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 316 ~~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~ 391 (1190)
.+. +.++.+ +..+..+|++.++++..+++.+.+.++++++|++ |++++||++++ + ++||||||||++
T Consensus 226 ~l~er~~s~qr~~------~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~-G~~~vEflvd~-d-~~y~iEINpR~~ 296 (1150)
T 3hbl_A 226 HLFERDCSVQRRH------QKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYV-NAGTVEFLVSG-D-EFFFIEVNPRVQ 296 (1150)
T ss_dssp EEEEEEEEEESSS------CEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEEET-T-EEEEEEEECSCC
T ss_pred EEEeeccceeccC------ceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceEEEEEEEEC-C-eEEEEEEeCCCC
Confidence 763 344332 5677789997799999999999999999999996 99999999996 4 899999999999
Q ss_pred CchHHHHHHhCCCHHHHHHHHHcCCCCCCC------Cccc-----------cCCCC-ccccCCcCeEEe-eecee---ee
Q 001014 392 RSSALASKATGFPIAKMAAKLSVGYSLDQI------PNDI-----------TKKTP-ASFEPSIDYVVT-KIPRF---AF 449 (1190)
Q Consensus 392 gs~~l~~~atG~~l~~~~~~~alG~~l~~~------~~~i-----------~~~~~-~~f~p~~~~v~~-k~p~~---~~ 449 (1190)
+++.+++.++|+|++++++++++|.+++.. +.++ +.++| ..|.|+.+.+.. +.|.. .+
T Consensus 297 g~~~vte~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~ 376 (1150)
T 3hbl_A 297 VEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRL 376 (1150)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEE
T ss_pred CCcceeehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEeccCCccccCCCCceEEEEEcCCCCceec
Confidence 999999999999999999999999999851 1112 12233 347787775542 33321 11
Q ss_pred cc-cCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 450 EK-FPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 450 ~~-~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
+. ....+..+.+.++| +|+|++.|+|++||++|+.++|+ +.+.|+.+| .+.|.+.|.||.
T Consensus 377 d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~i~G~~tn--------~~~~~~~~~~~~ 439 (1150)
T 3hbl_A 377 DAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTN--------IPFLINVMKNKK 439 (1150)
T ss_dssp EESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCEEESSCCS--------HHHHHHHHHCHH
T ss_pred cccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceEEeCccCC--------HHHHHHHhCCHH
Confidence 11 11123455566666 89999999999999999999996 788887655 556777777764
No 20
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=1.8e-40 Score=389.26 Aligned_cols=357 Identities=19% Similarity=0.201 Sum_probs=291.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d 169 (1190)
++++|+|+|+|++ |++++++++++|++|++++++++.+. ...+|..++.+. |.+.+.+++++ +|
T Consensus 11 ~~~~IlIlG~G~l-----------g~~la~aa~~lG~~viv~d~~~~~p~--~~~ad~~~~~~~~d~~~l~~~~~~--~d 75 (377)
T 3orq_A 11 FGATIGIIGGGQL-----------GKMMAQSAQKMGYKVVVLDPSEDCPC--RYVAHEFIQAKYDDEKALNQLGQK--CD 75 (377)
T ss_dssp TTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCTTCTT--GGGSSEEEECCTTCHHHHHHHHHH--CS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCCChh--hhhCCEEEECCCCCHHHHHHHHHh--CC
Confidence 4679999999976 78999999999999999999887655 677898887665 77888888874 89
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGE 249 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~ 249 (1190)
+|.+.++.... .... .++..+ .++|+++++++++||..+|++|+++|+|+|++..+.+.+++.++++++|
T Consensus 76 vi~~~~E~~~~-~~l~------~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g- 145 (377)
T 3orq_A 76 VITYEFENISA-QQLK------LLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLG- 145 (377)
T ss_dssp EEEESSTTSCH-HHHH------HHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTC-
T ss_pred cceecccccCH-HHHH------HHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcC-
Confidence 99887753222 2221 233332 4568999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCc
Q 001014 250 FPLIIRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGV 328 (1190)
Q Consensus 250 ~PvVVKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~ 328 (1190)
||+||||..++ +|+|+.++++.+|+.++++.+.. .+++||+||+|.+|+++.++++.+|++.+++..++....++
T Consensus 146 ~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~----~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e~~~~~g~ 221 (377)
T 3orq_A 146 YPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIET----SECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQI 221 (377)
T ss_dssp SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTT----SCEEEEECCCEEEEEEEEEEECGGGCEEECCCEEEEEETTE
T ss_pred CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCC----CcEEEEccCCCCEEEEEEEEEeCCCCEEEECCEeEEEECCE
Confidence 99999999997 89999999999999999887643 58999999999889999999888888887776666543332
Q ss_pred ccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 001014 329 HTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKM 408 (1190)
Q Consensus 329 ~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~ 408 (1190)
. .....|+. +++ .+++++.+.+++++||+. |++++||++++ +|++||+|||||++++.+++..+++++++++
T Consensus 222 ~---~~~~~Pa~-l~~--~~~~~~~a~~i~~~lg~~-G~~~ve~~~~~-~g~~~v~EinpR~~~sg~~t~~~~~~s~f~~ 293 (377)
T 3orq_A 222 L---FKTIVPAR-IDK--TAEAKEQVNKIIQSIHFI-GTFTVEFFIDS-NNQLYVNEIAPRPHNSGHYSIEACDYSQFDT 293 (377)
T ss_dssp E---EEEEESCS-SCC--HHHHHHHHHHHHTTSCCC-EEEEEEEEEET-TCCEEEEEEESSCCGGGTTHHHHBSSCHHHH
T ss_pred E---EEEECCCC-CCH--HHHHHHHHHHHHHHCCCe-EEEEEEEEEeC-CCcEEEEEeeCCcCCCCcEeehhcCCCHHHH
Confidence 2 23467886 777 889999999999999995 99999999997 7899999999999999999989999999999
Q ss_pred HHHHHcCCCCCC-CCccccCCCCcc---ccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHH
Q 001014 409 AAKLSVGYSLDQ-IPNDITKKTPAS---FEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKAL 484 (1190)
Q Consensus 409 ~~~~alG~~l~~-~~~~i~~~~~~~---f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~ 484 (1190)
++++++|+|+++ +........... ..+.........|.|.++.|.....+.+++| |||++.|.|.+++++++.
T Consensus 294 ~~ra~~G~pl~~~~~~~~~~~m~n~lg~~~~~~~~~~~~~~~~~~~~ygk~~~~~~rkm---Ghv~~~~~~~~~~~~~~~ 370 (377)
T 3orq_A 294 HILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKM---GHMTVLTNDVNQTEQDMY 370 (377)
T ss_dssp HHHHHTTCCCCSCCCBSSCEEEEEEEHHHHHHHGGGGGGCGGGCEEECCCSSCCTTSEE---EEEEEECSCHHHHHHHHH
T ss_pred HHHHHcCCCCCccccccccEEEEEEeCccchhHHHHHhhCCCCEEEECCCCCCCCCCee---EEEEEEcCCHHHHHHHhH
Confidence 999999999987 432111000000 0122222333469999999998778888888 999999999999999987
Q ss_pred Hhh
Q 001014 485 RSL 487 (1190)
Q Consensus 485 ~~l 487 (1190)
.-+
T Consensus 371 ~~~ 373 (377)
T 3orq_A 371 AKF 373 (377)
T ss_dssp HHT
T ss_pred Hhh
Confidence 654
No 21
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=5.7e-40 Score=394.49 Aligned_cols=364 Identities=18% Similarity=0.226 Sum_probs=292.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i 713 (1190)
..|||||+|+|+. +++++++++++|+++++++++++..+.....+|+.+.. ..+.+.++++
T Consensus 5 ~~~kiLI~g~g~~-----------a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~ 73 (446)
T 3ouz_A 5 EIKSILIANRGEI-----------ALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAA 73 (446)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHH
T ss_pred ccceEEEECCCHH-----------HHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 4689999999985 77889999999999999987776666666788988753 2557899999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG-- 790 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~-- 790 (1190)
++++++|+|++.+|.. ....++..++ +.| ++++||+++++.++.||..++++|+++|||+|++.
T Consensus 74 ~~~~~~d~i~p~~g~~~e~~~~~~~~~----------~~g---~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~ 140 (446)
T 3ouz_A 74 AEIAEADAIFPGYGFLSENQNFVEICA----------KHN---IKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDG 140 (446)
T ss_dssp HHHHTCSEEECCSSTTTTCHHHHHHHH----------HTT---CEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSS
T ss_pred HHHhCcCEEEECCcccccCHHHHHHHH----------HCC---CceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCccc
Confidence 9999999999988765 3446777787 889 99999999999999999999999999999999997
Q ss_pred eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEec
Q 001014 791 IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 791 ~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
.+.+.+++.++++++|||+||||..++||+||.+++|.+|+.++++.+... ++..+++||+||++++|++|++++|
T Consensus 141 ~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d 220 (446)
T 3ouz_A 141 ALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGD 220 (446)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEc
Confidence 889999999999999999999999999999999999999999999875432 3367899999996559999999999
Q ss_pred CCCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCC
Q 001014 867 SCGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 867 ~~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
++|+++.++..+. +... | .......|++.++++..+++.+.+.++++++|++|++++||+++.+|++||+|||||+
T Consensus 221 ~~g~~~~~~~~~~~~~~~--~-~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR~ 297 (446)
T 3ouz_A 221 SFGNVIHVGERDCSMQRR--H-QKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRL 297 (446)
T ss_dssp TTSCEEEEEEEEEEEEET--T-EEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSC
T ss_pred CCCCEEEEeeceeeeeec--C-ceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECCC
Confidence 8888876654432 1111 1 1122234666799999999999999999999999999999999777899999999999
Q ss_pred CCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCC-----c---------ccC---CCceeeC-
Q 001014 946 SRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPF-----E---------KFQ---GCDVLLG- 1007 (1190)
Q Consensus 946 ~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~-----~---------~~~---~~~~~lg- 1007 (1190)
+++++++..++|+|++++++++++|++++.. .......+++...++.. . .+| ++....+
T Consensus 298 ~g~~~~~~~~~G~dl~~~~~~~~~G~~l~~~---~~~~~~g~ai~~ri~ae~~~~~~p~~G~i~~~~~p~~~~vr~~~~~ 374 (446)
T 3ouz_A 298 QVEHCVSEMVSGIDIIEQMIKVAEGYALPSQ---ESIKLNGHSIECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHC 374 (446)
T ss_dssp CTTHHHHHHHHCCCHHHHHHHHHTTCCCCCG---GGCCCCSEEEEEEEESBCTTTCCBCCEECSEEECCCSTTEEEEECC
T ss_pred CCcceeeeeeeCCCHHHHHHHHHCCCCCCcC---CCCCcceEEEEEEeeccCCCccCCCCcEEeEEecCCCCCEEEEccc
Confidence 9999999999999999999999999998721 12223334443322100 0 011 1111101
Q ss_pred -------Ccccc-cceeeeeeCCHHHHHHHHHHHcC
Q 001014 1008 -------PEMRS-TGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1008 -------~~~rs-~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
+...+ +|.|++.|+|.++|+.++.++..
T Consensus 375 ~~G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~ 410 (446)
T 3ouz_A 375 YQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALD 410 (446)
T ss_dssp CTTCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHh
Confidence 11223 78899999999999999888764
No 22
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=7.2e-41 Score=385.99 Aligned_cols=331 Identities=11% Similarity=0.064 Sum_probs=269.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
.|||+|||||++ +++++.+++++|+++ ++++++.+. .+. . + ++|+|
T Consensus 1 Mk~igilGgGql-----------g~m~~~aa~~lG~~v--~~~~~~a~~--------~~~-~--------l----~~d~i 46 (355)
T 3eth_A 1 MKQVCVLGNGQL-----------GRMLRQAGEPLGIAV--WPVGLDAEP--------AAV-P--------F----QQSVI 46 (355)
T ss_dssp CCEEEEESCSHH-----------HHHHHHHHGGGTCEE--EEECTTCCG--------GGC-C--------C----TTSEE
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEE--ECCCCCCCc--------eEE-c--------c----cCCEE
Confidence 368999999994 556699999999999 455554221 111 1 1 89999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
++.++... ...+..++ +.| .++|+++++.+++||..+|++|+++|||+|+|..+++.+++.+++
T Consensus 47 t~e~e~v~-~~~l~~l~----------~~~-----~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~ 110 (355)
T 3eth_A 47 TAEIERWP-ETALTRQL----------ARH-----PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVF 110 (355)
T ss_dssp EESCSCCC-CCHHHHHH----------HTC-----TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHH
T ss_pred EECcCCcC-HHHHHHHH----------hcC-----CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHH
Confidence 98887653 35566666 555 578999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEecCcC-CCCcceEEeCC--HHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee
Q 001014 803 KEIGYPVVVRPSYV-LGGRAMEIVYT--DETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH 879 (1190)
Q Consensus 803 ~~igyPvvvKP~~~-~gg~Gv~iv~~--~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~ 879 (1190)
+++|||+||||+.+ ++|+|+.+++| .+|+.+++ .. +++||+||++++|++|.+++|.+|++..+++.++
T Consensus 111 ~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~------~~--~vivEe~I~~~~Eisv~v~~~~~G~~~~~p~~e~ 182 (355)
T 3eth_A 111 DRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC------YG--ECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHN 182 (355)
T ss_dssp HHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG------TT--TEEEEECCCCSEEEEEEEEECTTSCEEECCCEEE
T ss_pred HHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh------hC--CEEEEEccCCCcEEEEEEEEcCCCCEEEECCEEE
Confidence 99999999999986 78999999999 99987742 12 6999999977999999999998999999999888
Q ss_pred eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCC
Q 001014 880 IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHP 959 (1190)
Q Consensus 880 ~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~ 959 (1190)
+...|+. ...+||..++++..+++++++.+++++||++|+++|||+++ ++++||+|+|||++++.+++..++++|
T Consensus 183 ~~~~g~~----~~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~-~~~~~v~EinpR~~~sg~~t~~~~~~s 257 (355)
T 3eth_A 183 LHQDGIL----RTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVT-PQGLLINELAPRVHNSGHWTQNGASIS 257 (355)
T ss_dssp EEETTEE----EEEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE-TTEEEEEEEESSCCGGGTTHHHHSSSC
T ss_pred EeeCCeE----EEEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE-CCcEEEEEeeCCCCCCccEEeeeecCC
Confidence 7665432 22345557999999999999999999999999999999994 678999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceee-CC---cccccceeeeeeCCHHHHHHHHHHHcC
Q 001014 960 LAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLL-GP---EMRSTGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 960 l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~l-g~---~~rs~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
++++++|+++|.|+++........+-.+.-....-.....|+++.|+ || +.|+||||+..|+|.+++..++..+..
T Consensus 258 ~fe~~~ra~~G~pl~~~~~~~~~~m~nilg~~~~~~~~~~p~~~~~~ygk~~r~~rkmGhv~~~~~~~~~~~~~~~~~~~ 337 (355)
T 3eth_A 258 QFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIP 337 (355)
T ss_dssp HHHHHHHHHTTCCCCCCCCCSCEEEEEEESCCCCGGGGGSTTCEEEECCCCCCTTCEEEEEEEECSCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCCCCccccCceEEEEEecchHHHHHHhCCCCEEEEcCCCCCCCCeeEEEEEEcCCHHHHHHHHHHHHH
Confidence 99999999999999876432211110000000111222468888888 87 567899999999999999999999876
Q ss_pred C
Q 001014 1036 Q 1036 (1190)
Q Consensus 1036 ~ 1036 (1190)
.
T Consensus 338 ~ 338 (355)
T 3eth_A 338 L 338 (355)
T ss_dssp G
T ss_pred H
Confidence 5
No 23
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=100.00 E-value=3.2e-39 Score=383.30 Aligned_cols=371 Identities=18% Similarity=0.175 Sum_probs=283.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d~ 170 (1190)
++||||+|+|.+ +..++++++++|+++++++.. +.......++|+.+..+. +.+.+.++++++++|+
T Consensus 7 ~~~ilI~g~g~~-----------~~~~~~a~~~~G~~~v~v~~~-~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~ 74 (403)
T 4dim_A 7 NKRLLILGAGRG-----------QLGLYKAAKELGIHTIAGTMP-NAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDG 74 (403)
T ss_dssp CCEEEEECCCGG-----------GHHHHHHHHHHTCEEEEEECS-SCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSE
T ss_pred CCEEEEECCcHh-----------HHHHHHHHHHCCCEEEEEcCC-CCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCE
Confidence 469999999975 457999999999999999753 222223567888876554 7899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+|+ +........ ..+++.+|+ +|++++++..++||..++++|+++|+|+|++..+++.+++.++++++| |
T Consensus 75 v~~~-~~~~~~~~~-----a~~~~~~gl--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g-~ 145 (403)
T 4dim_A 75 AATC-CLDTGIVSL-----ARICDKENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLK-L 145 (403)
T ss_dssp EECC-SCSTTHHHH-----HHHHHHHTC--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSC-S
T ss_pred EEeC-CcchhHHHH-----HHHHHHcCc--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCC-C
Confidence 9985 322333222 235677887 499999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCccc
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHT 330 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~ 330 (1190)
|+||||..++||+|++++++.+|+.+++..+........++||+||+| .|++++++.. +|++.+++..++....+...
T Consensus 146 P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~~~~~-~g~~~~~~~~~~~~~~~~~~ 223 (403)
T 4dim_A 146 PVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQAFVY-KNDVLFVMPHGDETYMSHTA 223 (403)
T ss_dssp SEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEEEEEE-TTEEEEEEEEEEEEEESSSE
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEEEEEE-CCEEEEEEEecceeccCCCC
Confidence 999999999999999999999999999999887766678999999999 9999999975 57777766555443323223
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCch--HHHHHHhCCCHHHH
Q 001014 331 GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSS--ALASKATGFPIAKM 408 (1190)
Q Consensus 331 g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~--~l~~~atG~~l~~~ 408 (1190)
.......|+. ++++..+++.+.+.+++++||+..|++|+||+++ ++++||+|||||++++. .+++.++|+|++++
T Consensus 224 ~~~~~~~p~~-l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~iEiN~R~~~~~~~~~~~~~~G~d~~~~ 300 (403)
T 4dim_A 224 VPVGHYVPLD-VKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIELTGRVGANCLPELVEINYGIEYYKM 300 (403)
T ss_dssp EEEEEEESCC-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEEEEESSCCSTTHHHHHHHHHTSCHHHH
T ss_pred cceeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEEEEcCCCCCCcHHHHHHHHhCcCHHHH
Confidence 3445567887 9999999999999999999999733899999998 78999999999999975 57899999999999
Q ss_pred HHHHHcCCCCCCCCc-cccCCCC--c---cccCCcCeEE-eeeceee------ecccCCCCcccCCCCC---cEEEEEEE
Q 001014 409 AAKLSVGYSLDQIPN-DITKKTP--A---SFEPSIDYVV-TKIPRFA------FEKFPGSEPLLTTQMK---SVGEAMAL 472 (1190)
Q Consensus 409 ~~~~alG~~l~~~~~-~i~~~~~--~---~f~p~~~~v~-~k~p~~~------~~~~~~~~~~l~~~~~---s~G~v~a~ 472 (1190)
++++++|.+++.+.. +...... + .|.|..+.+. +..|... +..+...+..+....+ ++|+|++.
T Consensus 301 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~~g~vi~~ 380 (403)
T 4dim_A 301 IASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVK 380 (403)
T ss_dssp HHHHHTTCCTHHHHTTCCSSCCEEEEEEECCSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGCCEEEEEE
T ss_pred HHHHHcCCCccccccccccccccceEEEEEecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCceeEEEEEE
Confidence 999999999843322 1111111 1 2344444332 1212110 0111122233333333 49999999
Q ss_pred eCCHHHHHHHHHHhhh
Q 001014 473 GRTFQESFQKALRSLE 488 (1190)
Q Consensus 473 G~~~~ea~~ka~~~l~ 488 (1190)
|+|+++|++++.++++
T Consensus 381 ~~~~~~a~~~~~~~~~ 396 (403)
T 4dim_A 381 EETLDKCKDKLDVIIN 396 (403)
T ss_dssp ESSHHHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHhc
Confidence 9999999999999986
No 24
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=4.7e-40 Score=385.66 Aligned_cols=351 Identities=13% Similarity=0.173 Sum_probs=281.6
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERP 719 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~ 719 (1190)
...++|+|||+|+. +.+++++++++|+++++++++++.+... ++|+.+..+ .+.+.+.+++++ +
T Consensus 10 ~~~~~IlIlG~G~l-----------g~~la~aa~~lG~~viv~d~~~~~p~~~--~ad~~~~~~~~d~~~l~~~~~~--~ 74 (377)
T 3orq_A 10 KFGATIGIIGGGQL-----------GKMMAQSAQKMGYKVVVLDPSEDCPCRY--VAHEFIQAKYDDEKALNQLGQK--C 74 (377)
T ss_dssp CTTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCTTCTTGG--GSSEEEECCTTCHHHHHHHHHH--C
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCCChhhh--hCCEEEECCCCCHHHHHHHHHh--C
Confidence 35789999999994 5566999999999999999988866544 688877655 458888888865 6
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|.|.+.++... ...+..++ +.+ .++|+++++.+++||..++++|+++|||+|++..+.+.+++.
T Consensus 75 dvi~~~~E~~~-~~~l~~l~----------~~~-----~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~ 138 (377)
T 3orq_A 75 DVITYEFENIS-AQQLKLLC----------EKY-----NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDID 138 (377)
T ss_dssp SEEEESSTTSC-HHHHHHHH----------HHS-----CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHH
T ss_pred CcceecccccC-HHHHHHHh----------hhc-----CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHH
Confidence 77766554332 23445555 333 356899999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee
Q 001014 800 AIAKEIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME 878 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e 878 (1190)
++++++|||+|+||..++ +|+|+.++++.+|+.++++.+. ..+++||+||++.+|++|.++++.+|++..+++.+
T Consensus 139 ~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e 214 (377)
T 3orq_A 139 KAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE----TSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQE 214 (377)
T ss_dssp HHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT----TSCEEEEECCCEEEEEEEEEEECGGGCEEECCCEE
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCcEEEEccCCCCEEEEEEEEEeCCCCEEEECCEe
Confidence 999999999999999997 8999999999999999988753 36899999995449999999987778998888888
Q ss_pred eeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCC
Q 001014 879 HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGH 958 (1190)
Q Consensus 879 ~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~ 958 (1190)
.....|.. .....|+ .+++ .+++++++.+++++||++|++++||+++++|++||+|+|||++++.+++..++++
T Consensus 215 ~~~~~g~~---~~~~~Pa-~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~~~~ 288 (377)
T 3orq_A 215 NEHRNQIL---FKTIVPA-RIDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDY 288 (377)
T ss_dssp EEEETTEE---EEEEESC-SSCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHBSS
T ss_pred EEEECCEE---EEEECCC-CCCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehhcCC
Confidence 87654433 1223355 4666 7899999999999999999999999997789999999999999999998899999
Q ss_pred CHHHHHHHHHcCCCCCC-CCCCccccCCee-EEeec-cC-CCcccCCCceee-CC----cccccceeeeeeCCHHHHHHH
Q 001014 959 PLAKYAALVMSGKSLND-LGFTKEVIPKHV-SVKEA-VL-PFEKFQGCDVLL-GP----EMRSTGEVMGIDMSFPIAFAK 1029 (1190)
Q Consensus 959 ~l~~~~~~~~lG~~l~~-~~~~~~~~~~~~-~vk~~-~~-~~~~~~~~~~~l-g~----~~rs~G~v~~~g~~~~eA~~k 1029 (1190)
|++++++++++|.|+++ ..+.....+..+ +-..+ +. -+...|+++.|+ || +.|+||||+.+|+|.+++.++
T Consensus 289 s~f~~~~ra~~G~pl~~~~~~~~~~~m~n~lg~~~~~~~~~~~~~~~~~~~~ygk~~~~~~rkmGhv~~~~~~~~~~~~~ 368 (377)
T 3orq_A 289 SQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKMGHMTVLTNDVNQTEQD 368 (377)
T ss_dssp CHHHHHHHHHTTCCCCSCCCBSSCEEEEEEEHHHHHHHGGGGGGCGGGCEEECCCSSCCTTSEEEEEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccccccccEEEEEEeCccchhHHHHHhhCCCCEEEECCCCCCCCCCeeEEEEEEcCCHHHHHHH
Confidence 99999999999999987 543221111000 00000 11 122358888888 87 568899999999999999987
Q ss_pred HHH
Q 001014 1030 AQI 1032 (1190)
Q Consensus 1030 a~~ 1032 (1190)
.-.
T Consensus 369 ~~~ 371 (377)
T 3orq_A 369 MYA 371 (377)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 25
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=100.00 E-value=7.9e-39 Score=393.34 Aligned_cols=393 Identities=18% Similarity=0.271 Sum_probs=301.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCC---------eEEEEccCC--CCCCCCccCcceEEECC------
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY---------EVILINSNP--ATIMTDPGLADRTYITP------ 153 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~---------~vi~v~~~~--~~~~~~~~~ad~~~i~p------ 153 (1190)
+++||||+|+|.+ +..++++++++|+ +++++.+.. +..+...+++|+.+..|
T Consensus 46 ~~kkILI~g~g~~-----------a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~ 114 (554)
T 1w96_A 46 VISKILIANNGIA-----------AVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNN 114 (554)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGG
T ss_pred cccEEEEECCCHH-----------HHHHHHHHHHcCCcceecccCceEEEEecccccccCChhhhhCCEEEEcCCCCccc
Confidence 4679999999965 5689999999854 556654321 12233457889888754
Q ss_pred --CCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcC--CcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCC
Q 001014 154 --MTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYG--VELIGAKLDAIKKAEDRDLFKQAMKTIGVKTP 229 (1190)
Q Consensus 154 --~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~g--i~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp 229 (1190)
.+.+.+.++++++++|+|+|++|. ..++..+ .+.+++.| ++++||++++++++.||..++++|+++|||+|
T Consensus 115 ~y~d~~~l~~~a~~~~id~Vi~g~G~-~sE~~~~----~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p 189 (554)
T 1w96_A 115 NYANVDLIVDIAERADVDAVWAGWGH-ASENPLL----PEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCI 189 (554)
T ss_dssp TTTCHHHHHHHHHHTTCSEEECCSST-TTTCTHH----HHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBC
T ss_pred cccCHHHHHHHHHHhCCCEEEECCCc-cccCHHH----HHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcC
Confidence 468999999999999999998743 2232222 33578899 99999999999999999999999999999999
Q ss_pred Ceeec--------------------------CCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh
Q 001014 230 PSGIG--------------------------NTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA 283 (1190)
Q Consensus 230 ~~~~v--------------------------~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~ 283 (1190)
++..+ .+.+++.++++++| ||+||||..++||+|+.+|++.+|+.++++.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g-~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~ 268 (554)
T 1w96_A 190 PWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG-FPVMIKASEGGGGKGIRQVEREEDFIALYHQAAN 268 (554)
T ss_dssp CBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC-SSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHH
T ss_pred CccccccccccccccccccccccccccccCCCCHHHHHHHHHHcC-CCEEEEECCCCCCceEEEECCHHHHHHHHHHHHh
Confidence 98764 78899999889999 9999999999999999999999999999998887
Q ss_pred cCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE----EeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 001014 284 ASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR 359 (1190)
Q Consensus 284 ~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~----~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~ 359 (1190)
......++||+||+|.+|+++.+++|..|+++.+ |..++++ ...+...|+..++++..+++.+.+.++++
T Consensus 269 ~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~------~k~~~~~P~~~l~~~~~~~i~~~a~~~~~ 342 (554)
T 1w96_A 269 EIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRH------QKIIEEAPVTIAKAETFHEMEKAAVRLGK 342 (554)
T ss_dssp HSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETT------EEEEEEESCCSSCHHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeec------cceeeeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 6656789999999976899999999887887765 3444332 23344678877899999999999999999
Q ss_pred HhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCCc----------------
Q 001014 360 EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPN---------------- 423 (1190)
Q Consensus 360 ~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~~---------------- 423 (1190)
++|+. |++++||++++.+|++||+|||||+++++.++..++|+|++++++++++|.+++.++.
T Consensus 343 alg~~-G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~ 421 (554)
T 1w96_A 343 LVGYV-SAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEID 421 (554)
T ss_dssp HHTCC-EEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCC
T ss_pred HcCCc-ceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccccchhhhccCCcccccccc
Confidence 99997 9999999998437899999999999999988889999999999999999998865310
Q ss_pred -------------cc--cCC---------CC-ccccCCcCeEE-eeece-----eeecccCCCCcccCCCCC-cEEEEEE
Q 001014 424 -------------DI--TKK---------TP-ASFEPSIDYVV-TKIPR-----FAFEKFPGSEPLLTTQMK-SVGEAMA 471 (1190)
Q Consensus 424 -------------~i--~~~---------~~-~~f~p~~~~v~-~k~p~-----~~~~~~~~~~~~l~~~~~-s~G~v~a 471 (1190)
.+ .+. ++ ..|.|..+.+. +..|. +.+...+|. .+....+ ++|+|++
T Consensus 422 ~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v~~~~~~~~g~--~i~~~~~~~~~~vi~ 499 (554)
T 1w96_A 422 FEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNG--NIHSFSDSQFGHIFA 499 (554)
T ss_dssp TTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSEEEEEEECCSC--SSCSSCSEEEEEEEE
T ss_pred ccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCEEEeeecccCC--ccCCCCCCceEEEEE
Confidence 11 111 11 12335444332 11111 111111121 2222222 5999999
Q ss_pred EeCCHHHHHHHHHHhhh-cCccC-CCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 472 LGRTFQESFQKALRSLE-CGFSG-WGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 472 ~G~~~~ea~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
.|.|++||++++.++++ +.+.| +.+| ...|...|.+|.
T Consensus 500 ~g~~~~eA~~~~~~al~~i~i~g~~~~~--------i~~~~~~~~~~~ 539 (554)
T 1w96_A 500 FGENRQASRKHMVVALKELSIRGDFRTT--------VEYLIKLLETED 539 (554)
T ss_dssp EESSHHHHHHHHHHHHHHHTTCC----C--------CHHHHHHHTSHH
T ss_pred EeCCHHHHHHHHHHHHhccEEEeeccCC--------HHHHHHHhcCHh
Confidence 99999999999999997 78887 5544 357788888875
No 26
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=3.5e-39 Score=391.53 Aligned_cols=326 Identities=18% Similarity=0.238 Sum_probs=274.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC---------CCeEEEecCCCC--CcCccccCCcceeec-------
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA---------GYETIMMNSNPE--TVSTDYDTSDRLYFE------- 703 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~---------G~~vi~v~~~p~--~~s~~~~~ad~~~~~------- 703 (1190)
..+||||+|+|.+ ++.+++++|++ |++++++.+.++ ..+.....+|+.+..
T Consensus 55 ~~~kvLIanrGei-----------A~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~~ 123 (587)
T 3jrx_A 55 VIEKVLIANNGIA-----------AVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNN 123 (587)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGG
T ss_pred ccCEEEEECChHH-----------HHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeCCCCccc
Confidence 4689999999986 88999999986 799999966433 344455578888764
Q ss_pred -CCcHHHHHHHhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHH
Q 001014 704 -PLTVEDVLNVIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKE 781 (1190)
Q Consensus 704 -p~~~e~v~~i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~ 781 (1190)
..+.+.+++++++.++|+|++.+|.. +...++..++ +.| ++++||++++++++.||..++++|++
T Consensus 124 syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le----------~~G---i~~iGp~~~ai~~~~DK~~ak~ll~~ 190 (587)
T 3jrx_A 124 NYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLC----------KNG---VAFLGPPSEAMWALGDKIASTVVAQT 190 (587)
T ss_dssp TTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHH----------TTT---CEESSCCHHHHHHHCSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHH----------HCC---CCeeCCCHHHHHHhCCHHHHHHHHHH
Confidence 24589999999999999999998865 4446778888 899 99999999999999999999999999
Q ss_pred cCCCCCCcee-----------------------------ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHH
Q 001014 782 LSIEQPKGGI-----------------------------AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLV 832 (1190)
Q Consensus 782 ~gIp~p~~~~-----------------------------~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~ 832 (1190)
+|||+|++.. +.+.+++.++++++|||+||||+.++||+||++|+|.+|+.
T Consensus 191 aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~ 270 (587)
T 3jrx_A 191 LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFP 270 (587)
T ss_dssp TTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHH
T ss_pred cCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHH
Confidence 9999999976 78999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHH
Q 001014 833 TYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911 (1190)
Q Consensus 833 ~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a 911 (1190)
++++.+.......+++||+||++++|++|++++|++|+++.+...+ .+... +. ......|++.++++..+++.+.+
T Consensus 271 ~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr--~q-k~ie~aPa~~l~~~~~~~i~~~A 347 (587)
T 3jrx_A 271 ILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRR--HQ-KIVEEAPATIAPLAIFEFMEQCA 347 (587)
T ss_dssp HHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESS--SC-EEEEEESCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeecccccc--cc-ceeEecCCCCCCHHHHHHHHHHH
Confidence 9999887766678899999996559999999999888887665432 22221 10 11223477678999999999999
Q ss_pred HHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCCC--------------
Q 001014 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLG-------------- 977 (1190)
Q Consensus 912 ~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~-------------- 977 (1190)
.++++++||+|++++||+++.+|++||+|||||++++++++..++|+|++++++++++|++|+++.
T Consensus 348 ~~~a~alGy~G~~~VEfl~d~dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~ 427 (587)
T 3jrx_A 348 IRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVT 427 (587)
T ss_dssp HHHHHHHTCCEEEEEEEEECSSSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCC
T ss_pred HHHHHHcCCcceeEEEEEEeCCCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccchhccccccccccccc
Confidence 999999999999999999987889999999999999999999999999999999999999997432
Q ss_pred ---CCcc---ccCCeeEEeeccC
Q 001014 978 ---FTKE---VIPKHVSVKEAVL 994 (1190)
Q Consensus 978 ---~~~~---~~~~~~~vk~~~~ 994 (1190)
+.+. +.+..+++.+.+.
T Consensus 428 ~~~~~~~~~~~~~~ghaie~Ri~ 450 (587)
T 3jrx_A 428 PISFETPSNPPLARGHVIAARIT 450 (587)
T ss_dssp CCCSSSCSSCCCCCSEEEEEEEE
T ss_pred ccccccccccCCCCceEEEEeec
Confidence 1111 3456778888776
No 27
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=4.6e-39 Score=390.11 Aligned_cols=308 Identities=19% Similarity=0.251 Sum_probs=257.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC---------CCeEEEecCCCC--CcCccccCCcceeecC------
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA---------GYETIMMNSNPE--TVSTDYDTSDRLYFEP------ 704 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~---------G~~vi~v~~~p~--~~s~~~~~ad~~~~~p------ 704 (1190)
..+||||+|+|.+ ++.+++++|++ |++++++.+.++ ..+.....+|+.+..+
T Consensus 39 ~~~kvLianrGei-----------a~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~~~~~~~ 107 (540)
T 3glk_A 39 VIEKVLIANNGIA-----------AVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNN 107 (540)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGG
T ss_pred cccEEEEECChHH-----------HHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEeCCCCccc
Confidence 4689999999985 88899999986 789999865332 4444555788887642
Q ss_pred --CcHHHHHHHhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHH
Q 001014 705 --LTVEDVLNVIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKE 781 (1190)
Q Consensus 705 --~~~e~v~~i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~ 781 (1190)
.+.+.+++++++.++|+|++.+|.. ....++..++ +.| ++++||++++++++.||..++++|++
T Consensus 108 sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le----------~~G---i~~iGp~~~ai~~~~DK~~~k~ll~~ 174 (540)
T 3glk_A 108 NYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLC----------KNG---VAFLGPPSEAMWALGDKIASTVVAQT 174 (540)
T ss_dssp TTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHH----------HTT---CEESSCCHHHHC---CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHH----------HcC---CceeCCCHHHHHHhCCHHHHHHHHHH
Confidence 4579999999999999999998865 4446777788 899 99999999999999999999999999
Q ss_pred cCCCCCCcee-----------------------------ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHH
Q 001014 782 LSIEQPKGGI-----------------------------AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLV 832 (1190)
Q Consensus 782 ~gIp~p~~~~-----------------------------~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~ 832 (1190)
+|||+|++.. +.+.+++.++++++|||+||||+.++||+||.+|++.+||.
T Consensus 175 ~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~ 254 (540)
T 3glk_A 175 LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFP 254 (540)
T ss_dssp TTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHH
T ss_pred cCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHH
Confidence 9999999976 88999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHH
Q 001014 833 TYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWT 911 (1190)
Q Consensus 833 ~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a 911 (1190)
++++.+.......+++||+||++++|++|++++|++|+++.++..+. +... | .......|++.++++..+++.+.+
T Consensus 255 ~a~~~~~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~--~-~k~ie~~Pa~~l~~~~~~~l~~~a 331 (540)
T 3glk_A 255 ILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRR--H-QKIVEEAPATIAPLAIFEFMEQCA 331 (540)
T ss_dssp HHHHHHHHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC------CCSEEEESCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeec--c-cceEEecCCCCCCHHHHHHHHHHH
Confidence 99998877666778999999955599999999998888877654331 2111 1 111223477668999999999999
Q ss_pred HHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCC
Q 001014 912 IKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL 976 (1190)
Q Consensus 912 ~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~ 976 (1190)
.++++++||+|++++||++|.+|++||+|||||++++++++..++|+|++++++++++|++|+++
T Consensus 332 ~~~~~alG~~G~~~VEf~~d~dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~ 396 (540)
T 3glk_A 332 IRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 396 (540)
T ss_dssp HHHHHHHTCCEEEEEEEEEETTSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHcCCccceEEEEEEcCCCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCcccc
Confidence 99999999999999999998788999999999999999999999999999999999999999843
No 28
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=100.00 E-value=6.9e-39 Score=374.84 Aligned_cols=340 Identities=22% Similarity=0.298 Sum_probs=256.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC--CHHHHHHHHHHcCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM--TPELVEQVLEKERPD 169 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~--~~~~v~~i~~~~~~d 169 (1190)
||||+|+|||.. |++++++++++||+|+++|+++++++ .+++|+.|+.+. +.+.+.. ..+++|
T Consensus 1 MK~I~ilGgg~~-----------g~~~~~~Ak~~G~~vv~vd~~~~~~~--~~~aD~~~~~~~~~d~~~~~~--~~~~~D 65 (363)
T 4ffl_A 1 MKTICLVGGKLQ-----------GFEAAYLSKKAGMKVVLVDKNPQALI--RNYADEFYCFDVIKEPEKLLE--LSKRVD 65 (363)
T ss_dssp CCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCTTCTT--TTTSSEEEECCTTTCHHHHHH--HHTSSS
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCChh--HhhCCEEEECCCCcCHHHHHH--HhcCCC
Confidence 579999999954 78999999999999999999998876 567999887665 3444444 445899
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGE 249 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~ 249 (1190)
+|+|++++........ .+++..+++ +||+++++++++||..+|++|+++|+|+|++.. +|
T Consensus 66 ~v~~~~~~~~~~~~~~-----~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~-------------ig- 125 (363)
T 4ffl_A 66 AVLPVNENLACIEFLN-----SIKEKFSCP-VLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP-------------SK- 125 (363)
T ss_dssp EEEECCCCHHHHHHHH-----HHGGGCSSC-BCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC-------------SS-
T ss_pred EEEECCCChhHHHHHH-----HHHHHCCCc-cCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee-------------cC-
Confidence 9999998655443322 345556664 689999999999999999999999999999753 57
Q ss_pred CcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcc
Q 001014 250 FPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVH 329 (1190)
Q Consensus 250 ~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~ 329 (1190)
||+||||+.++||+|+.+++|.+++.. ....+++||||+| +|++++++.|+++.+++.+..+... +
T Consensus 126 ~P~vvKp~~g~g~~gv~~v~~~~~~~~---------~~~~~~~ee~i~g-~e~sv~~~~d~~~~~~~~~~~~~~~----~ 191 (363)
T 4ffl_A 126 PPYFVKPPCESSSVGARIIYDDKDLEG---------LEPDTLVEEYVEG-EVVSLEVVGDGSHFAVVKETLVHID----E 191 (363)
T ss_dssp SCEEEECSSCCTTTTCEEEC------C---------CCTTCEEEECCCS-EEEEEEEEEESSCEEECCCEEEEEC----T
T ss_pred CCEEEEECCCCCCcCeEEeccHHHhhh---------hccchhhhhhccC-cEEEEEEEEECCeEEEEEEEEeccC----C
Confidence 999999999999999999999988753 2568999999999 9999999999776655544444433 3
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCch-HHHHHHhCCCHHHH
Q 001014 330 TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSS-ALASKATGFPIAKM 408 (1190)
Q Consensus 330 ~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~-~l~~~atG~~l~~~ 408 (1190)
++......|++ .. +++++.+.++++++|+. |++++||+++ ++++||+|||||+++.+ .++..+||+|++++
T Consensus 192 ~~~~~~~~p~~-~~----~~~~~~a~~~~~~l~~~-G~~~vef~~~--~~~~~viEiN~R~~g~~~~~~~~~~g~dl~~~ 263 (363)
T 4ffl_A 192 TYDCHMVTPLP-AN----PLFRQISHDLAANLPLK-GIMDVEAIFG--PKGLRVIEIDARFPSQTPTVVYYSSGINLIEL 263 (363)
T ss_dssp TSCEEEEEECC-CC----HHHHHHHHHHHHTTTCE-EEEEEEEEEE--TTEEEEEEEECSCCSSHHHHHHHHHCCCHHHH
T ss_pred cccceeecchh-HH----HHHHHHHHHHHHhCCcc-ceeeeeeEEe--CCeEEEEEEeCCCCCChHHHHHHHHCcCHHHH
Confidence 45566677776 44 45788999999999996 9999999999 46799999999998865 58899999999999
Q ss_pred HHHHHcCCCCCCCCccccCC---------CCccccCCcCeEEeeece-eeecccCCCCcccCCCCCcEEEEEEEeCCHHH
Q 001014 409 AAKLSVGYSLDQIPNDITKK---------TPASFEPSIDYVVTKIPR-FAFEKFPGSEPLLTTQMKSVGEAMALGRTFQE 478 (1190)
Q Consensus 409 ~~~~alG~~l~~~~~~i~~~---------~~~~f~p~~~~v~~k~p~-~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~e 478 (1190)
++++++|.+++.......+. ....+.|..+.+....+. ..|...++.+..+.+...++|+|+++|+|++|
T Consensus 264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vi~~G~~~~e 343 (363)
T 4ffl_A 264 LFRAFTDGVEEIRAIPENKYCIYEHLMFGENGVLIPVGEQVLSMGSDYGKFYEEPGIEIFLCKGEYPVFTMVFWGKDREE 343 (363)
T ss_dssp HHHHTTTCCCCC----CCCEEEEEEEEECGGGBEEECCHHHHTTCSEEEEEEEETTEEEEEEESSSCEEEEEEEESSHHH
T ss_pred HHHHHCCCCCCccccCCCceEEEEEEecCCCCccCCCCceEEecCCCeeEEEecCCCCCEecCCCCceEEEEEEECCHHH
Confidence 99999999887543322111 111122222222211122 23444445555666777889999999999999
Q ss_pred HHHHHHHhhh
Q 001014 479 SFQKALRSLE 488 (1190)
Q Consensus 479 a~~ka~~~l~ 488 (1190)
|++|+.++++
T Consensus 344 A~~k~~~al~ 353 (363)
T 4ffl_A 344 TGAKRCKGLS 353 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 29
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=100.00 E-value=1.2e-37 Score=372.14 Aligned_cols=371 Identities=15% Similarity=0.207 Sum_probs=281.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC--CHH----HHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM--TPE----LVEQVLE 164 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~--~~~----~v~~i~~ 164 (1190)
..|+++|+|+|... ..++++++++|++|++++++++........+|+.+..+. +.+ .+.++++
T Consensus 4 ~~k~l~Il~~~~~~-----------~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~ 72 (425)
T 3vot_A 4 RNKNLAIICQNKHL-----------PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFV 72 (425)
T ss_dssp CCCEEEEECCCTTC-----------CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCChhH-----------HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhh
Confidence 35799999999642 368999999999999999988877766677787774443 443 4555667
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIA 244 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~ 244 (1190)
+.++|+|++..+ .....+. .+.+.+|++ |++++++++++||..||++|+++|||+|++..+++.+++.+
T Consensus 73 ~~~id~V~~~~e--~~~~~~a-----~l~e~lglp--g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~-- 141 (425)
T 3vot_A 73 EFPFDGVMTLFE--PALPFTA-----KAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLADLEN-- 141 (425)
T ss_dssp HSCCSEEECCCG--GGHHHHH-----HHHHHTTCS--SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--
T ss_pred hcCCCEEEECCc--hhHHHHH-----HHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcHHHHHH--
Confidence 789999998765 2222222 245667776 89999999999999999999999999999999999888754
Q ss_pred HHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC---------CCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 245 NEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS---------LTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 245 ~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~---------~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
.++| ||+||||+.++||+|+.+|+|.+||.++++.+.... ....+++|+||+| +|++++++.+ +|+..
T Consensus 142 ~~~g-~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv~~~~~-~g~~~ 218 (425)
T 3vot_A 142 RKLS-YPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAIETLSI-QGNVH 218 (425)
T ss_dssp CCCC-SSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEEEEEEE-TTEEE
T ss_pred hhcC-CcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEEEEEEe-CCcEE
Confidence 5789 999999999999999999999999999998875432 3568999999999 8999999986 56777
Q ss_pred EEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--
Q 001014 316 IICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS-- 393 (1190)
Q Consensus 316 ~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs-- 393 (1190)
+++..++....+.+.....+..|++ ++++..+++.+.+.+++++||+.+|++|+||++++ +|++||+|+|||++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG~~~~iEiN~R~gG~~~ 296 (425)
T 3vot_A 219 VLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DGTPYVIEVGARIGGSGV 296 (425)
T ss_dssp EEEEEEEECCCCSBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TCCEEEEEEESSCGGGGH
T ss_pred EEeEEEEeccCCCccccceEeeccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CCcEEEEEEecCCCCCCc
Confidence 7777777766666667778889998 99999999999999999999996799999999997 7899999999999886
Q ss_pred -hHHHHHHhCCCHHHHHHHHHcCCCCCCCCc-cccCCC--CccccCCc-CeEEeeec---------e-eeecccCCCCcc
Q 001014 394 -SALASKATGFPIAKMAAKLSVGYSLDQIPN-DITKKT--PASFEPSI-DYVVTKIP---------R-FAFEKFPGSEPL 458 (1190)
Q Consensus 394 -~~l~~~atG~~l~~~~~~~alG~~l~~~~~-~i~~~~--~~~f~p~~-~~v~~k~p---------~-~~~~~~~~~~~~ 458 (1190)
+.++..++|+|+++++++.++|........ ...... ...+.|.. ...+.+++ . ..+..+...+..
T Consensus 297 ~~~l~~~~~G~d~~~~~i~~alg~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~ 376 (425)
T 3vot_A 297 SHYIVKESTGINFMQLVLQNALKPLESSEFEGEIRPVRTAGNYIIPVQGSGTFEKIDGLEEVKQRQEVKRVFQFMRRGAK 376 (425)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHSCCCGGGSCSCCCCSSEEEEEECCCCSCEEEEEEETHHHHHTCTTEEEEEECCCTTCE
T ss_pred hHHHHHHHHCCCHHHHHHHHHCCCccccccccccccceEEEEEEEcCCCCeEEEecCCHHHHhcCCCeEEEEEEecCCCE
Confidence 357789999999999999999965543221 111111 11122221 12222222 1 112222222222
Q ss_pred cC---CCCCcEEEEEEEeCCHHHHHHHHHHhhh
Q 001014 459 LT---TQMKSVGEAMALGRTFQESFQKALRSLE 488 (1190)
Q Consensus 459 l~---~~~~s~G~v~a~G~~~~ea~~ka~~~l~ 488 (1190)
+. ....++|+|++.|+|++||.+++.++++
T Consensus 377 v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~ 409 (425)
T 3vot_A 377 ILPYPHFSGYPGFILTSHHSYEECEAFYRELDD 409 (425)
T ss_dssp ECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHH
T ss_pred eCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence 22 2344589999999999999999999876
No 30
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=2.1e-39 Score=373.84 Aligned_cols=333 Identities=16% Similarity=0.136 Sum_probs=267.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
||||+|||||++ |++++.+++++|++| ++++++.+. .++. .++|+|
T Consensus 1 Mk~igilGgGql-----------g~m~~~aa~~lG~~v--~~~~~~a~~--------~~~~-------------l~~d~i 46 (355)
T 3eth_A 1 MKQVCVLGNGQL-----------GRMLRQAGEPLGIAV--WPVGLDAEP--------AAVP-------------FQQSVI 46 (355)
T ss_dssp CCEEEEESCSHH-----------HHHHHHHHGGGTCEE--EEECTTCCG--------GGCC-------------CTTSEE
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEE--ECCCCCCCc--------eEEc-------------ccCCEE
Confidence 358999999976 899999999999999 455554321 1111 189999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
++.++... .+.. ..+++.| .++|+++++++++||..+|++|+++|||+|++..+++.+++.++++++| ||
T Consensus 47 t~e~e~v~-~~~l------~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G-~P 116 (355)
T 3eth_A 47 TAEIERWP-ETAL------TRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLG-EL 116 (355)
T ss_dssp EESCSCCC-CCHH------HHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHC-SE
T ss_pred EECcCCcC-HHHH------HHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcC-CC
Confidence 99987432 2222 2355555 5789999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCCC-CCCcceEEeCC--HHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCCCCc
Q 001014 252 LIIRPAFT-LGGTGGGIAYN--KEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGV 328 (1190)
Q Consensus 252 vVVKP~~g-~gg~Gv~iv~~--~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~ 328 (1190)
+||||+.+ ++|+|+.++++ .+|+.+++ . . +++||+||++.+|+++.++++.+|++.+++..+++...++
T Consensus 117 ~VvKp~~~G~~GkGv~~v~~~~~~el~~a~------~-~-~vivEe~I~~~~Eisv~v~~~~~G~~~~~p~~e~~~~~g~ 188 (355)
T 3eth_A 117 AIVKRRTGGYDGRGQWRLRANETEQLPAEC------Y-G-ECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGI 188 (355)
T ss_dssp EEEEESSSCCTTTTEEEEETTCGGGSCGGG------T-T-TEEEEECCCCSEEEEEEEEECTTSCEEECCCEEEEEETTE
T ss_pred EEEEecCCCCCCCeEEEEcCCCHHHHHHHh------h-C-CEEEEEccCCCcEEEEEEEEcCCCCEEEECCEEEEeeCCe
Confidence 99999985 88999999999 99988743 1 1 6999999996699999999999999888777776543332
Q ss_pred ccccEEE-EecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 001014 329 HTGDSIT-VAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407 (1190)
Q Consensus 329 ~~g~~~~-~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~ 407 (1190)
... ..|+. ++++..+++++++.+++++||+. |+++|||+++ ++++||+|||||++++.+++..++|+|+++
T Consensus 189 ----~~~~~~pa~-l~~~~~~~~~~~a~~i~~aLg~~-G~~~vEf~~~--~~~~~v~EinpR~~~sg~~t~~~~~~s~fe 260 (355)
T 3eth_A 189 ----LRTSVAFPQ-ANAQQQARAEEMLSAIMQELGYV-GVMAMECFVT--PQGLLINELAPRVHNSGHWTQNGASISQFE 260 (355)
T ss_dssp ----EEEEEECSS-CCHHHHHHHHHHHHHHHHHHTCC-EEEEEEEEEE--TTEEEEEEEESSCCGGGTTHHHHSSSCHHH
T ss_pred ----EEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCe-eEEEEEEEEE--CCcEEEEEeeCCCCCCccEEeeeecCCHHH
Confidence 222 35554 99999999999999999999996 9999999999 468999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCccccCCCCccccCCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhh
Q 001014 408 MAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSL 487 (1190)
Q Consensus 408 ~~~~~alG~~l~~~~~~i~~~~~~~f~p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l 487 (1190)
+++++++|+|++++.....+......-..........|.|.++.|.+ ..+.+++| |||++.|.|.+++++++.++.
T Consensus 261 ~~~ra~~G~pl~~~~~~~~~~m~nilg~~~~~~~~~~p~~~~~~ygk-~~r~~rkm---Ghv~~~~~~~~~~~~~~~~~~ 336 (355)
T 3eth_A 261 LHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDK-EVRPGRKV---GHLNLTDSDTSRLTATLEALI 336 (355)
T ss_dssp HHHHHHTTCCCCCCCCCSCEEEEEEESCCCCGGGGGSTTCEEEECCC-CCCTTCEE---EEEEEECSCHHHHHHHHHHHG
T ss_pred HHHHHHcCCCCCCccccCceEEEEEecchHHHHHHhCCCCEEEEcCC-CCCCCCee---EEEEEEcCCHHHHHHHHHHHH
Confidence 99999999999876432111000000000111223678999999987 67777666 999999999999999999997
Q ss_pred h
Q 001014 488 E 488 (1190)
Q Consensus 488 ~ 488 (1190)
+
T Consensus 337 ~ 337 (355)
T 3eth_A 337 P 337 (355)
T ss_dssp G
T ss_pred H
Confidence 6
No 31
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=4.8e-38 Score=370.03 Aligned_cols=348 Identities=19% Similarity=0.269 Sum_probs=273.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d~V 171 (1190)
+||||+|+|+ +|++++++|+++|++++++++++..+. ..++|..+..+. +.+.+.+++ +++|+|
T Consensus 2 ~~Ililg~g~-----------~g~~~~~a~~~~G~~v~~~~~~~~~~~--~~~~~~~~~~~~~d~~~l~~~~--~~~d~v 66 (380)
T 3ax6_A 2 KKIGIIGGGQ-----------LGKMMTLEAKKMGFYVIVLDPTPRSPA--GQVADEQIVAGFFDSERIEDLV--KGSDVT 66 (380)
T ss_dssp CEEEEECCSH-----------HHHHHHHHHHHTTCEEEEEESSTTCTT--GGGSSEEEECCTTCHHHHHHHH--HTCSEE
T ss_pred CEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEeCCCCCch--hhhCceEEECCCCCHHHHHHHH--hcCCEE
Confidence 6899999994 378999999999999999998877654 456777765554 778888888 589999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
++.++... ... ...++..|++ ++++++++.+++||..++++|+++|+|+|++..+++.++ +.++++ ||
T Consensus 67 ~~~~e~~~-~~~------~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~~-~P 134 (380)
T 3ax6_A 67 TYDLEHID-VQT------LKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFG-FP 134 (380)
T ss_dssp EESCSCSC-HHH------HHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTTC-SS
T ss_pred EecccCCC-HHH------HHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhcC-CC
Confidence 99887432 111 2357888998 679999999999999999999999999999999999887 567899 99
Q ss_pred EEEecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEeeeee--CCCC
Q 001014 252 LIIRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICSIENV--DPMG 327 (1190)
Q Consensus 252 vVVKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~~e~~--~~~g 327 (1190)
+||||..++ +|+|+.++++.+|+.++++ ..++|||||+ | +|+++.++++.+|++..++..+++ ...+
T Consensus 135 ~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------~~~lvEe~i~~g-~e~sv~~~~~~~G~~~~~~~~~~~~~~~~~ 205 (380)
T 3ax6_A 135 VVQKARKGGYDGRGVFIIKNEKDLENAIK--------GETYLEEFVEIE-KELAVMVARNEKGEIACYPVVEMYFDEDAN 205 (380)
T ss_dssp EEEEESCCC-----EEEECSGGGGGGCCC--------SSEEEEECCCEE-EEEEEEEEECSSCCEEEEEEEEEC------
T ss_pred EEEEecCCCCCCCCeEEECCHHHHHHHhc--------CCEEEEeccCCC-eeEEEEEEECCCCCEEEECCeeeeecccCC
Confidence 999999999 9999999999999876553 5899999999 7 999999999878888877777765 4333
Q ss_pred cccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 001014 328 VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAK 407 (1190)
Q Consensus 328 ~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~ 407 (1190)
.. .....|++ ++++..+++++.+.+++++||+. |++++||++++ +|++||+|+|||++++.+++..++|+|+++
T Consensus 206 ~~---~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~-G~~~vd~~~~~-~g~~~viEiN~R~~~~~~~~~~~~~~~~~~ 279 (380)
T 3ax6_A 206 IC---DTVIAPAR-IEEKYSKIAREIATSVVEALEGV-GIFGIEMFLTK-QGEILVNEIAPRPHNSGHYTIEACVTSQFE 279 (380)
T ss_dssp -----CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCC-EEEEEEEEEET-TSCEEEEEEESSCCGGGTHHHHHBSSCHHH
T ss_pred ee---EEEECCCC-CCHHHHHHHHHHHHHHHHHCCCe-EEEEEEEEEeC-CCcEEEEEecCCCCCCceeehhhccccHHH
Confidence 32 23467887 99999999999999999999995 99999999997 788999999999999888888899999999
Q ss_pred HHHHHHcCCCCCCCCccccCCCCccccC------------CcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCC
Q 001014 408 MAAKLSVGYSLDQIPNDITKKTPASFEP------------SIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRT 475 (1190)
Q Consensus 408 ~~~~~alG~~l~~~~~~i~~~~~~~f~p------------~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~ 475 (1190)
.+++.++|.+++.....-. .....+.. .++.+ +.|.|.+..++.... +..+.+|+|++.|+|
T Consensus 280 ~~~~~~~g~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~g~~~~---~~~~~lg~v~~~g~~ 353 (380)
T 3ax6_A 280 QHIRAIMNLPLGSTELLIP-AVMVNLLGEEGYYGKPALIGLEEAL--AIEGLSLHFYGKKET---RPYRKMGHFTVVDRD 353 (380)
T ss_dssp HHHHHHTTCCCCCCCBCSC-EEEEEEEBCTTCCBSEEEESHHHHH--TSTTEEEEECCCSCB---CBTCEEEEEEEECSS
T ss_pred HHHHHHhCCCCCCccccCc-eEEEEEecccccccccccchhHHHh--cCCCCEEEecCCCCC---CCCCeeEEEEEEeCC
Confidence 9999999999987532211 00001111 11111 446665555443322 234557999999999
Q ss_pred HHHHHHHHHHhhh
Q 001014 476 FQESFQKALRSLE 488 (1190)
Q Consensus 476 ~~ea~~ka~~~l~ 488 (1190)
++||++++.++++
T Consensus 354 ~~~a~~~~~~~~~ 366 (380)
T 3ax6_A 354 VERALEKALRAKK 366 (380)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999976
No 32
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=1.1e-38 Score=415.94 Aligned_cols=395 Identities=21% Similarity=0.311 Sum_probs=261.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC---------------C
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM---------------T 155 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~---------------~ 155 (1190)
+++||||.+.|++ +..++++++++|+++++++++++..+.+...+|..|..+. +
T Consensus 13 ~~~~~lianrGei-----------a~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld 81 (1165)
T 2qf7_A 13 PISKILVANRSEI-----------AIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLS 81 (1165)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHC
T ss_pred cceEEEEcCCcHH-----------HHHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccC
Confidence 4679999999987 5689999999999999999998877666778998875432 4
Q ss_pred HHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee--e
Q 001014 156 PELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG--I 233 (1190)
Q Consensus 156 ~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~ 233 (1190)
.+.+.++++++++|+|+|+++ ...++... ...++..|++++||++++++++.||..+|++|+++|||+|++. .
T Consensus 82 ~~~I~~~a~~~~iD~V~pg~g-~lsE~~~~----a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~ 156 (1165)
T 2qf7_A 82 IDEVIRVAKLSGADAIHPGYG-LLSESPEF----VDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPL 156 (1165)
T ss_dssp HHHHHHHHHHHTCSEEECCSS-TTTTCHHH----HHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC------
T ss_pred HHHHHHHHHHhCCCEEEECCC-chhcCHHH----HHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcC
Confidence 678999999999999999875 22233322 3468889999999999999999999999999999999999998 7
Q ss_pred cCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEe
Q 001014 234 GNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRD 309 (1190)
Q Consensus 234 v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d 309 (1190)
+++.+++.++++++| ||+||||..++||+|+++|++.+|+.++++.+... ++...++||+||+|.+|++++++.|
T Consensus 157 v~s~eea~~~a~~ig-yPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D 235 (1165)
T 2qf7_A 157 PDDMAEVAKMAAAIG-YPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGD 235 (1165)
T ss_dssp ----------------------------------------------------------------CCCSSEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHhcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEc
Confidence 888999999999999 99999999999999999999999999998876543 2356899999999669999999999
Q ss_pred CCCcEEEEE----eeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEE
Q 001014 310 LADNVVIIC----SIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIE 385 (1190)
Q Consensus 310 ~~g~~~~~~----~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viE 385 (1190)
++|+++.++ +.++. .+..+..+|++.++++..+++.+.+.++++++|++ |++++||++++++|++||||
T Consensus 236 ~~G~vv~l~~r~~s~~r~------~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~-G~~~vEf~vd~~dg~~~~iE 308 (1165)
T 2qf7_A 236 THGNVVHLFERDCSVQRR------NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYI-GAGTVEYLMDADTGKFYFIE 308 (1165)
T ss_dssp TTSCEEEEEEEEEEEEET------TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEeecccceec------ccceEEecccccCCHHHHHHHHHHHHHHHHHcCCC-cceeEEEEEECCCCCEEEEE
Confidence 888887653 33332 25677889997799999999999999999999997 99999999994378999999
Q ss_pred eCCCCCCchHHHHHHhCCCHHHHHHHHHcCCCCCCCC------ccc-----------cCCCC-ccccCCcCeEE-eeec-
Q 001014 386 MNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIP------NDI-----------TKKTP-ASFEPSIDYVV-TKIP- 445 (1190)
Q Consensus 386 iNpR~~gs~~l~~~atG~~l~~~~~~~alG~~l~~~~------~~i-----------~~~~~-~~f~p~~~~v~-~k~p- 445 (1190)
||||+++++++++.++|+|+++.++++++|.++++.. .++ ..++| ..|.|..+.+. +..|
T Consensus 309 iNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~ 388 (1165)
T 2qf7_A 309 VNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSAS 388 (1165)
T ss_dssp EECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCC
T ss_pred EEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCC
Confidence 9999999998999999999999999999999887541 111 11222 24667766532 1212
Q ss_pred --eeeecc-cCCCCcccCCCCCc-EEEEEEEeCCHHHHHHHHHHhhh-cCccCCCCCCCCCCCCCHHHHHhHhcCCC
Q 001014 446 --RFAFEK-FPGSEPLLTTQMKS-VGEAMALGRTFQESFQKALRSLE-CGFSGWGCSNVKELDWDWEQLKYSLRVPN 517 (1190)
Q Consensus 446 --~~~~~~-~~~~~~~l~~~~~s-~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~l~~~l~~~~ 517 (1190)
.+.+.. ....+..+.+..++ +|+|++.|+|+++|++|+.++++ +.+.|+.+| ...|...|.||.
T Consensus 389 ~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~~i~i~G~~tn--------i~~~~~~~~~~~ 457 (1165)
T 2qf7_A 389 GFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATN--------LTFLEAIIGHPK 457 (1165)
T ss_dssp CTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCS--------HHHHHHHHTSHH
T ss_pred CCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEecccCC--------HHHHHHHhcCHH
Confidence 111111 00112344444444 89999999999999999999997 788886554 567777777774
No 33
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-38 Score=373.23 Aligned_cols=347 Identities=14% Similarity=0.181 Sum_probs=278.9
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIV 724 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~ 724 (1190)
||||+|+|+. +.+++++++++|+++++++++++.+... .+|.......+.+.+.+++ +++|+|++
T Consensus 1 ~iliiG~g~~-----------g~~~~~a~~~~G~~v~~~~~~~~~~~~~--~a~~~~~~~~d~~~l~~~~--~~~d~v~~ 65 (369)
T 3aw8_A 1 MIGILGGGQL-----------GRMLALAGYPLGLSFRFLDPSPEACAGQ--VGELVVGEFLDEGALLRFA--EGLALVTY 65 (369)
T ss_dssp CEEEECCSHH-----------HHHHHHHHTTBTCCEEEEESCTTCGGGG--TSEEEECCTTCHHHHHHHH--TTCSEEEE
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCChHHH--hhceEecCCCCHHHHHHHH--hCCCEEEE
Confidence 6999999973 5667999999999999999887665433 5666334556789999998 68999998
Q ss_pred ccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHH
Q 001014 725 QFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKE 804 (1190)
Q Consensus 725 ~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~ 804 (1190)
.+++.. ..+++.++ +.| ++||+++++.+++||..++++|+++|||+|++..+++.+++.+++++
T Consensus 66 ~~e~~~-~~~~~~l~----------~~g-----~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~ 129 (369)
T 3aw8_A 66 EFENVP-VEAARRLE----------GRL-----PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKR 129 (369)
T ss_dssp CCTTCC-HHHHHHHH----------HHS-----CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTT
T ss_pred CCCCcC-HHHHHHHH----------HcC-----CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHH
Confidence 887664 45566666 666 58899999999999999999999999999999999999999999999
Q ss_pred hCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeecc
Q 001014 805 IGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQA 883 (1190)
Q Consensus 805 igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~ 883 (1190)
+|||+|+||..++ ||+|+.+++|.+|+.++++.+ ...+++||+||+.|+|++|.+++|++|++..+++.+.....
T Consensus 130 ~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~----~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~~~~~~ 205 (369)
T 3aw8_A 130 VGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL----GGRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLVENRHWG 205 (369)
T ss_dssp TCSSEEEEECCC------EEEECSHHHHHHHHTTT----CSSSEEEEECCCCSEEEEEEEEECTTSCEEECCCEEEEEET
T ss_pred cCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc----CCCcEEEEEcCCCCEEEEEEEEECCCCCEEEECCeeeeeeC
Confidence 9999999999999 999999999999999888763 25789999999659999999999988888888877766443
Q ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHH
Q 001014 884 GVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKY 963 (1190)
Q Consensus 884 g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~ 963 (1190)
+. ++ ....|++.++++..+++.+++.+++++||++|++++||+++. |++|+||+|||++++.+.+..++|+|+++.
T Consensus 206 ~~--~~-~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~~~~~~ 281 (369)
T 3aw8_A 206 GI--LR-LSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIEGAETSQFEN 281 (369)
T ss_dssp TE--EE-EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHHBSSCHHHH
T ss_pred CE--EE-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeeeeecCCHHHH
Confidence 32 22 234466558999999999999999999999999999999965 889999999999998777777899999999
Q ss_pred HHHHHcCCCCCCCCCCccccCCeeEEeeccC-------CCcccCCCceee-CC---cccccceeeeeeCCHHHHHHHHHH
Q 001014 964 AALVMSGKSLNDLGFTKEVIPKHVSVKEAVL-------PFEKFQGCDVLL-GP---EMRSTGEVMGIDMSFPIAFAKAQI 1032 (1190)
Q Consensus 964 ~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~-------~~~~~~~~~~~l-g~---~~rs~G~v~~~g~~~~eA~~ka~~ 1032 (1190)
++++++|.++++.... .. .+...++ .+...|+.+.++ |+ ..+.+|+|++.|+|.++|..++..
T Consensus 282 ~~~~~~g~~l~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~lg~v~~~g~~~~ea~~~~~~ 355 (369)
T 3aw8_A 282 HLRAVLGLPLGSTAPR-----GQ-SAMVNLIGEKPPFAEVLKVEGAHLHWYGKAVRPGRKVGHITLRRDGLKALEEGLAR 355 (369)
T ss_dssp HHHHHHTCCCCCCCBC-----SE-EEEEEEESCCCCHHHHHTSTTEEEEECCCCCCTTCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcccc-----cc-EEEEEEeCCCchHHHhccCCCcEEEEecCCCCCCCeEEEEEEEcCCHHHHHHHHHH
Confidence 9999999999865322 11 1111111 112345544444 54 457789999999999999999999
Q ss_pred HcCC
Q 001014 1033 AAGQ 1036 (1190)
Q Consensus 1033 ~~~~ 1036 (1190)
+...
T Consensus 356 ~~~~ 359 (369)
T 3aw8_A 356 LSRL 359 (369)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8765
No 34
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-38 Score=369.71 Aligned_cols=352 Identities=17% Similarity=0.166 Sum_probs=278.0
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEe
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip 173 (1190)
||||+|+|+. |++++++++++|+++++++++++.+. ..++|.......+.+.+.+++ +++|+|++
T Consensus 1 ~iliiG~g~~-----------g~~~~~a~~~~G~~v~~~~~~~~~~~--~~~a~~~~~~~~d~~~l~~~~--~~~d~v~~ 65 (369)
T 3aw8_A 1 MIGILGGGQL-----------GRMLALAGYPLGLSFRFLDPSPEACA--GQVGELVVGEFLDEGALLRFA--EGLALVTY 65 (369)
T ss_dssp CEEEECCSHH-----------HHHHHHHHTTBTCCEEEEESCTTCGG--GGTSEEEECCTTCHHHHHHHH--TTCSEEEE
T ss_pred CEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCCCChH--HHhhceEecCCCCHHHHHHHH--hCCCEEEE
Confidence 6999999953 78999999999999999998776543 356777335556888898888 68999999
Q ss_pred cCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEE
Q 001014 174 TMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLI 253 (1190)
Q Consensus 174 ~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvV 253 (1190)
+++... .. + ...++..| ++|++++++.+++||..+|++|+++|||+|++..+++.+++.++++++| ||+|
T Consensus 66 ~~e~~~---~~--~--~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g-~P~v 135 (369)
T 3aw8_A 66 EFENVP---VE--A--ARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVG-LPAL 135 (369)
T ss_dssp CCTTCC---HH--H--HHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTC-SSEE
T ss_pred CCCCcC---HH--H--HHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcC-CCEE
Confidence 997543 11 1 22567778 7899999999999999999999999999999999999999999999999 9999
Q ss_pred EecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcccc
Q 001014 254 IRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICSIENVDPMGVHTG 331 (1190)
Q Consensus 254 VKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g 331 (1190)
|||..++ ||+|+.+++|.+|+.++++.+ ....++||+||+ | +|+++.+++|.+|++++++..+++...+. .
T Consensus 136 vKp~~~~~~g~Gv~~v~~~~el~~~~~~~----~~~~~lvEe~i~~g-~e~sv~~~~d~~G~~~~~~~~~~~~~~~~--~ 208 (369)
T 3aw8_A 136 LKTRRGGYDGKGQALVRTEEEALEALKAL----GGRGLILEGFVPFD-REVSLLAVRGRTGEVAFYPLVENRHWGGI--L 208 (369)
T ss_dssp EEECCC------EEEECSHHHHHHHHTTT----CSSSEEEEECCCCS-EEEEEEEEECTTSCEEECCCEEEEEETTE--E
T ss_pred EEEcCCCCCcceEEEECCHHHHHHHHHhc----CCCcEEEEEcCCCC-EEEEEEEEECCCCCEEEECCeeeeeeCCE--E
Confidence 9999999 999999999999999988764 256899999999 7 99999999988888877665555432222 1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 001014 332 DSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAK 411 (1190)
Q Consensus 332 ~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~ 411 (1190)
.....|++.++++..+++++.+.+++++||++ |++++||++++ |++|++|+|||++++...+..++|+|+++.+++
T Consensus 209 -~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~-G~~~vd~~~~~--~~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~ 284 (369)
T 3aw8_A 209 -RLSLAPAPGASEALQKKAEAYALRAMEALDYV-GVLALEFFQVG--EELLFNEMAPRVHNSGHWTIEGAETSQFENHLR 284 (369)
T ss_dssp -EEEEESCTTCCHHHHHHHHHHHHHHHHHHTCC-EEEEEEEEEET--TEEEEEEEESSCCGGGTTHHHHBSSCHHHHHHH
T ss_pred -EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCe-eEEEEEEEEEC--CcEEEEEEeCCcCCccceeeeeecCCHHHHHHH
Confidence 24568887799999999999999999999995 99999999994 789999999999998777778999999999999
Q ss_pred HHcCCCCCCCCccccCCCCc-ccc---CCcCeEEeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHHHhh
Q 001014 412 LSVGYSLDQIPNDITKKTPA-SFE---PSIDYVVTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKALRSL 487 (1190)
Q Consensus 412 ~alG~~l~~~~~~i~~~~~~-~f~---p~~~~v~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l 487 (1190)
.++|.+++..... +.... .+. |..+. ....|.|.++.|.+ ..+..+.+|+|++.|+|++||++|+.+++
T Consensus 285 ~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~g~----~~~~~~~lg~v~~~g~~~~ea~~~~~~~~ 357 (369)
T 3aw8_A 285 AVLGLPLGSTAPR--GQSAMVNLIGEKPPFAE-VLKVEGAHLHWYGK----AVRPGRKVGHITLRRDGLKALEEGLARLS 357 (369)
T ss_dssp HHHTCCCCCCCBC--SEEEEEEEESCCCCHHH-HHTSTTEEEEECCC----CCCTTCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHcCCCCCCcccc--ccEEEEEEeCCCchHHH-hccCCCcEEEEecC----CCCCCCeEEEEEEEcCCHHHHHHHHHHHH
Confidence 9999999875421 11110 010 11111 11345554444432 23344668999999999999999999998
Q ss_pred h
Q 001014 488 E 488 (1190)
Q Consensus 488 ~ 488 (1190)
+
T Consensus 358 ~ 358 (369)
T 3aw8_A 358 R 358 (369)
T ss_dssp T
T ss_pred H
Confidence 6
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=5e-38 Score=371.51 Aligned_cols=360 Identities=18% Similarity=0.218 Sum_probs=281.3
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERP 719 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~ 719 (1190)
+.++||||+|+|+. +.+++++++++|+++++++++|+.+.. ..+|+.+..+ .+.+.++++++++++
T Consensus 9 ~~~~~ili~g~g~~-----------~~~~~~a~~~~G~~v~~~~~~~~~~~~--~~~d~~~~~~~~d~~~l~~~~~~~~~ 75 (391)
T 1kjq_A 9 PAATRVMLLGSGEL-----------GKEVAIECQRLGVEVIAVDRYADAPAM--HVAHRSHVINMLDGDALRRVVELEKP 75 (391)
T ss_dssp TTCCEEEEESCSHH-----------HHHHHHHHHTTTCEEEEEESSTTCGGG--GGSSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEECCCCCchh--hhccceEECCCCCHHHHHHHHHHcCC
Confidence 45689999999863 567799999999999999999877543 3677777655 568999999999999
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHH-HHcCCCCCCceeecCHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAII-KELSIEQPKGGIAKSEADA 798 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l-~~~gIp~p~~~~~~s~~e~ 798 (1190)
|+|++.++... ..++..++ +.| + .++|+++++.+++||..++++| +++|||+|++..+.+.+++
T Consensus 76 d~v~~~~e~~~-~~~~~~l~----------~~g---i-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~ 140 (391)
T 1kjq_A 76 HYIVPEIEAIA-TDMLIQLE----------EEG---L-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLF 140 (391)
T ss_dssp SEEEECSSCSC-HHHHHHHH----------HTT---C-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHH
T ss_pred CEEEECCCcCC-HHHHHHHH----------hCC---C-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHH
Confidence 99999887443 34566677 888 8 4689999999999999999999 8999999999999999999
Q ss_pred HHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC--CCCcEEEEEecCCcceEEEeEEecCCCcEEEEee
Q 001014 799 LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD--PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI 876 (1190)
Q Consensus 799 ~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i 876 (1190)
.++++++|||+||||..++||+|+.+++|.+|+.++++.+.... ...+++||+||++|.|++|.++++++| +.+++.
T Consensus 141 ~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~g-~~~~~~ 219 (391)
T 1kjq_A 141 REAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDG-VHFCAP 219 (391)
T ss_dssp HHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETTE-EEECCC
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCCC-eEEccC
Confidence 99999999999999999999999999999999999998765432 246899999996599999999998665 555555
Q ss_pred eeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhccc
Q 001014 877 MEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAI 956 (1190)
Q Consensus 877 ~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~ 956 (1190)
.++... .++..+.+.|..++++..+++.+++.+++++||++|++++||+++.+ ++||+|+|||++++.......+
T Consensus 220 ~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~~~~ 294 (391)
T 1kjq_A 220 VGHRQE----DGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVTLISQ 294 (391)
T ss_dssp EEEEEE----TTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGHHHHB
T ss_pred cceEEE----CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECCCCCCcceeeeec
Confidence 565532 24444455344589999999999999999999999999999999644 8999999999999866655566
Q ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeec--------cCCCcccCCCceee-CCc----ccccceeeeeeCCH
Q 001014 957 GHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEA--------VLPFEKFQGCDVLL-GPE----MRSTGEVMGIDMSF 1023 (1190)
Q Consensus 957 G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~--------~~~~~~~~~~~~~l-g~~----~rs~G~v~~~g~~~ 1023 (1190)
|+|++++++++++|.+++++..........+....+ +....+ |+...++ |+. .+.+|+|++.|+|.
T Consensus 295 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pg~~v~~~~~~~~~~~~~lg~v~~~g~~~ 373 (391)
T 1kjq_A 295 DLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQNVTFDNVQNAVG-ADLQIRLFGKPEIDGSRRLGVALATAESV 373 (391)
T ss_dssp SSCHHHHHHHHHTTCCCCCCCBCSSEEEEEECCEEEESSCEEECGGGSCB-TTEEEEECCCCCEEEECCCEEEEEECSSH
T ss_pred CcCHHHHHHHHHcCCCCCCccccCcEEEEEEEccCcccccccccHHHHhC-CCCEEEEeccCCCCCCCeEEEEEEecCCH
Confidence 999999999999999987543211100000000000 001112 5554444 432 47799999999999
Q ss_pred HHHHHHHHHHcC
Q 001014 1024 PIAFAKAQIAAG 1035 (1190)
Q Consensus 1024 ~eA~~ka~~~~~ 1035 (1190)
++|..++..+..
T Consensus 374 ~~a~~~~~~~~~ 385 (391)
T 1kjq_A 374 VDAIERAKHAAG 385 (391)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 36
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=5.9e-38 Score=377.78 Aligned_cols=365 Identities=19% Similarity=0.283 Sum_probs=285.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-C------CcHHHHHHHhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-P------LTVEDVLNVID 715 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-p------~~~e~v~~i~~ 715 (1190)
.|||||+|+|+. +.+++++++++|+++++++++++..+.....+|+.+.. | .+.+.++++++
T Consensus 2 ~k~ilI~g~g~~-----------~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~ 70 (451)
T 1ulz_A 2 VNKVLVANRGEI-----------AVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLAL 70 (451)
T ss_dssp CSSEEECCCHHH-----------HHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHH
T ss_pred CceEEEECCcHH-----------HHHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCCcccccCCHHHHHHHHH
Confidence 478999999874 67889999999999999998777665556678887764 2 34689999999
Q ss_pred hcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--ee
Q 001014 716 LERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG--IA 792 (1190)
Q Consensus 716 ~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~--~~ 792 (1190)
++++|+|++.+|.. ....++..++ +.| ++++||+++++.++.||..++++|+++|||+|++. .+
T Consensus 71 ~~~~d~v~~~~g~~~e~~~~~~~~~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~ 137 (451)
T 1ulz_A 71 EVGADAIHPGYGFLAENAEFAKMCE----------EAG---ITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVL 137 (451)
T ss_dssp HTTCCEEECCSSTTTTCHHHHHHHH----------HTT---CEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSC
T ss_pred HcCCCEEEECCCccccCHHHHHHHH----------HCC---CeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCccccc
Confidence 99999999987743 2234567777 889 99999999999999999999999999999999997 78
Q ss_pred cCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecCC
Q 001014 793 KSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADSC 868 (1190)
Q Consensus 793 ~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~~ 868 (1190)
.+.+++.++++++|||+||||..++||+||.+++|.+|+.++++.+.. .++..+++||+||++++|++|+++++++
T Consensus 138 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 217 (451)
T 1ulz_A 138 KSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKH 217 (451)
T ss_dssp CCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTT
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCC
Confidence 999999999999999999999999999999999999999999887643 2345689999999656899999999877
Q ss_pred CcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 869 GNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 869 G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
|+++.++.... ..+. | .......|++.++++..+++.+.+.+++++||++|++++||+++.+|++||||+|||+++
T Consensus 218 G~~~~~~~~~~~~~~~--~-~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R~~~ 294 (451)
T 1ulz_A 218 GNVIHLGERDCSIQRR--N-QKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 294 (451)
T ss_dssp SCEEEEEEEEEEEEET--T-EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSCCT
T ss_pred CCEEEEeeeecccccc--c-ccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCCCCc
Confidence 88765552211 1111 1 011122366568999999999999999999999999999999977888999999999999
Q ss_pred ChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCC-------------Cc-----ccCCC--ceee-
Q 001014 948 TVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLP-------------FE-----KFQGC--DVLL- 1006 (1190)
Q Consensus 948 s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~-------------~~-----~~~~~--~~~l- 1006 (1190)
+.+++..++|+|++++++++++|.+++... ........++...+++ .. ..+++ +.++
T Consensus 295 ~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~ 372 (451)
T 1ulz_A 295 EHPVSEMVTGIDIVKWQIKIAAGEPLTIKQ--EDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAA 372 (451)
T ss_dssp THHHHHHHHCCCHHHHHHHHHTTCCCCCCG--GGCCCCSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCC
T ss_pred cchHHHHHhCCCHHHHHHHHHcCCCCCCcc--ccCCCceEEEEEeccccCcccCcCCCCceeceEECCCCCCcccccCcc
Confidence 999988999999999999999999886210 0011111222211110 00 01222 1112
Q ss_pred -CCc-----ccccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1007 -GPE-----MRSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1007 -g~~-----~rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
|.+ .+.+|+|++.|+|.++|..++.++...
T Consensus 373 ~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~ 408 (451)
T 1ulz_A 373 RGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALET 408 (451)
T ss_dssp TTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCEecccccchheEEEEECCCHHHHHHHHHHHHhh
Confidence 322 234899999999999999999988754
No 37
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=9e-38 Score=377.08 Aligned_cols=367 Identities=19% Similarity=0.264 Sum_probs=287.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC---------CcHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP---------LTVEDVLN 712 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p---------~~~e~v~~ 712 (1190)
..|||||+|+|+. +.+++++++++|+++++++++++..+.....+|+.|..+ .+.+.+++
T Consensus 5 ~~k~ILI~g~g~~-----------~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~ 73 (461)
T 2dzd_A 5 RIRKVLVANRGEI-----------AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIE 73 (461)
T ss_dssp CCSEEEECSCHHH-----------HHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHH
T ss_pred cCcEEEEECCcHH-----------HHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHH
Confidence 4589999998874 677899999999999999998887766666788877643 45789999
Q ss_pred HhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce-
Q 001014 713 VIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG- 790 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~- 790 (1190)
+++++++|+|++.+|.. ....++..++ +.| ++++||+++++.++.||..++++|+++|||+|++.
T Consensus 74 ~~~~~~id~v~~~~g~~~E~~~~~~~~~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~ 140 (461)
T 2dzd_A 74 IAKAHDVDAIHPGYGFLSENIQFAKRCR----------EEG---IIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSD 140 (461)
T ss_dssp HHHHTTCCEEECCSSSSTTCHHHHHHHH----------HTT---CEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCS
T ss_pred HHHHhCCCEEEECCCccccCHHHHHHHH----------HcC---CEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcc
Confidence 99999999999987643 2335677777 889 99999999999999999999999999999999997
Q ss_pred -eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEe
Q 001014 791 -IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALA 865 (1190)
Q Consensus 791 -~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~ 865 (1190)
.+.+.+++.++++++|||+||||..++||+||.+++|.+|+.++++.+.. .++..+++||+||++++|++|++++
T Consensus 141 ~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 220 (461)
T 2dzd_A 141 GPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILG 220 (461)
T ss_dssp SCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEE
T ss_pred cCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEE
Confidence 78999999999999999999999999999999999999999999887643 2345789999999656899999999
Q ss_pred cCCCcEEEEeee-eeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccC
Q 001014 866 DSCGNVVIGGIM-EHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 866 d~~G~v~~~~i~-e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
+++|+++..... ....+.... .....|++.++++..+++.+.+.++++++|+.|.+++||+++. |++||||+|||
T Consensus 221 ~~~G~~~~~~~~~~~~~~~~~~---~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~~~~viEiN~R 296 (461)
T 2dzd_A 221 DYEGNIVHLYERDCSVQRRHQK---VVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPR 296 (461)
T ss_dssp CTTCCEEEEEEEEEEEEETTEE---EEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-TEEEEEEEESS
T ss_pred cCCCCEEEEEeccccccccccc---eEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCEEEEEEECC
Confidence 988887643211 111111111 1123366678999999999999999999999999999999965 89999999999
Q ss_pred CCCChhhhhcccCCCHHHHHHHHHcCCCCCCCC--CCcc--ccCCeeEEeeccC------CCcccCC----------Cce
Q 001014 945 ASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLG--FTKE--VIPKHVSVKEAVL------PFEKFQG----------CDV 1004 (1190)
Q Consensus 945 ~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~--~~~~--~~~~~~~vk~~~~------~~~~~~~----------~~~ 1004 (1190)
++++++++..++|+|++++++++++|.++++.. +... .....+.++..+. .|..-+| ...
T Consensus 297 ~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v 376 (461)
T 2dzd_A 297 IQVEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGV 376 (461)
T ss_dssp CCGGGHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESEEGGGTTEECCEECSEEECCCCTTE
T ss_pred CCCceeeEEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeecccCCccCccCCCCeeeEEecCCCCCe
Confidence 999988888899999999999999999988642 2111 1233344433211 0110011 011
Q ss_pred ee-------CCcc----cc-cceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1005 LL-------GPEM----RS-TGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1005 ~l-------g~~~----rs-~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
.+ |-.. .+ .|.|++.|+|.++|..++.++...
T Consensus 377 ~~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~ 420 (461)
T 2dzd_A 377 RLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLRE 420 (461)
T ss_dssp EEEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred EeecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHh
Confidence 11 1110 11 688999999999999999998754
No 38
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=4.2e-37 Score=363.60 Aligned_cols=360 Identities=18% Similarity=0.280 Sum_probs=276.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d 169 (1190)
+++||||+|+|+. |++++++++++|++|++++++++.+. ...+|..+..+ .+.+.+.++++++++|
T Consensus 10 ~~~~ili~g~g~~-----------~~~~~~a~~~~G~~v~~~~~~~~~~~--~~~~d~~~~~~~~d~~~l~~~~~~~~~d 76 (391)
T 1kjq_A 10 AATRVMLLGSGEL-----------GKEVAIECQRLGVEVIAVDRYADAPA--MHVAHRSHVINMLDGDALRRVVELEKPH 76 (391)
T ss_dssp TCCEEEEESCSHH-----------HHHHHHHHHTTTCEEEEEESSTTCGG--GGGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEECCCCCch--hhhccceEECCCCCHHHHHHHHHHcCCC
Confidence 4579999999853 78899999999999999999887643 56778877655 5888999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAM-KTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l-~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
+|++.++... .+. ...++..|+ .+||+++++++++||..++++| +++|||+|++..+++.+++.+++++++
T Consensus 77 ~v~~~~e~~~-~~~------~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g 148 (391)
T 1kjq_A 77 YIVPEIEAIA-TDM------LIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIG 148 (391)
T ss_dssp EEEECSSCSC-HHH------HHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHC
T ss_pred EEEECCCcCC-HHH------HHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcC
Confidence 9999887332 221 234777898 5789999999999999999999 899999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC--CCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS--LTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
||+||||..++||+|+.++++.+|+.++++.+.... ....++||+||+ | .|+++.++++.+| ..++...++...
T Consensus 149 -~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g-~E~sv~~~~~~~g-~~~~~~~~~~~~ 225 (391)
T 1kjq_A 149 -YPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFD-FEITLLTVSAVDG-VHFCAPVGHRQE 225 (391)
T ss_dssp -SSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCS-EEEEEEEEEETTE-EEECCCEEEEEE
T ss_pred -CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCC-eEEEEEEEEeCCC-eEEccCcceEEE
Confidence 999999999999999999999999999998876532 246899999999 6 9999999998665 333333333221
Q ss_pred CCcccccE-EEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCC
Q 001014 326 MGVHTGDS-ITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFP 404 (1190)
Q Consensus 326 ~g~~~g~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~ 404 (1190)
.++. ..+.|+. ++++..+++.+.+.+++++||+. |++++||++++ + ++||+|+|||++++..++..++|+|
T Consensus 226 ----~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~-G~~~ve~~~~~-~-~~~viEiN~R~~~~~~~~~~~~g~~ 297 (391)
T 1kjq_A 226 ----DGDYRESWQPQQ-MSPLALERAQEIARKVVLALGGY-GLFGVELFVCG-D-EVIFSEVSPRPHDTGMVTLISQDLS 297 (391)
T ss_dssp ----TTEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEEET-T-EEEEEEEESSCCGGGGGHHHHBSSC
T ss_pred ----CCEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCe-eEEEEEEEEeC-C-cEEEEEEECCCCCCcceeeeecCcC
Confidence 1222 2346776 99999999999999999999995 99999999995 4 8999999999999876666678999
Q ss_pred HHHHHHHHHcCCCCCCCCccccCCCCccc--c--CC----cCeE--EeeeceeeecccCCCCcccCCCCCcEEEEEEEeC
Q 001014 405 IAKMAAKLSVGYSLDQIPNDITKKTPASF--E--PS----IDYV--VTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGR 474 (1190)
Q Consensus 405 l~~~~~~~alG~~l~~~~~~i~~~~~~~f--~--p~----~~~v--~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~ 474 (1190)
++++++++++|.+++++.. .+....++ . |. ...+ +.+ |.+.+..+..... .....+|+|++.|+
T Consensus 298 ~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pg~~v~~~~~~~~---~~~~~lg~v~~~g~ 371 (391)
T 1kjq_A 298 EFALHVRAFLGLPVGGIRQ--YGPAASAVILPQLTSQNVTFDNVQNAVG-ADLQIRLFGKPEI---DGSRRLGVALATAE 371 (391)
T ss_dssp HHHHHHHHHTTCCCCCCCB--CSSEEEEEECCEEEESSCEEECGGGSCB-TTEEEEECCCCCE---EEECCCEEEEEECS
T ss_pred HHHHHHHHHcCCCCCCccc--cCcEEEEEEEccCcccccccccHHHHhC-CCCEEEEeccCCC---CCCCeEEEEEEecC
Confidence 9999999999999875432 11110000 0 10 0000 012 3333222222111 12234799999999
Q ss_pred CHHHHHHHHHHhhh
Q 001014 475 TFQESFQKALRSLE 488 (1190)
Q Consensus 475 ~~~ea~~ka~~~l~ 488 (1190)
|+++|++|+.++++
T Consensus 372 ~~~~a~~~~~~~~~ 385 (391)
T 1kjq_A 372 SVVDAIERAKHAAG 385 (391)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999986
No 39
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-37 Score=375.52 Aligned_cols=364 Identities=18% Similarity=0.220 Sum_probs=283.6
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHHhh
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVID 715 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i~~ 715 (1190)
|||||+|+|+. +++++++++++|+++++++++++..+.....+|+.+.. ..+.+.++++++
T Consensus 2 k~ilI~g~g~~-----------~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~ 70 (451)
T 2vpq_A 2 KKVLIANRGEI-----------AVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIAT 70 (451)
T ss_dssp CEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHH
T ss_pred ceEEEeCCCHH-----------HHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHH
Confidence 78999999874 77889999999999999988766555555577877762 245789999999
Q ss_pred hcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--ee
Q 001014 716 LERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG--IA 792 (1190)
Q Consensus 716 ~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~--~~ 792 (1190)
++++|+|++.+|.. ....++..++ +.| ++++||+++++.++.||..++++|+++|||+|++. .+
T Consensus 71 ~~~~d~v~~~~g~~~e~~~~~~~~~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~ 137 (451)
T 2vpq_A 71 STGCDGVHPGYGFLAENADFAELCE----------ACQ---LKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLM 137 (451)
T ss_dssp HTTCSEEECCSSTTTTCHHHHHHHH----------TTT---CEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCB
T ss_pred HcCCCEEEECCCccccCHHHHHHHH----------HcC---CeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCc
Confidence 99999999987743 2224677777 889 99999999999999999999999999999999977 88
Q ss_pred cCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEecCC
Q 001014 793 KSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALADSC 868 (1190)
Q Consensus 793 ~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~d~~ 868 (1190)
.+.+++.++++++|||+||||..++||+||.+++|.+|+.++++.+... ++..+++||+||++++|++|+++++++
T Consensus 138 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~ 217 (451)
T 2vpq_A 138 KDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSY 217 (451)
T ss_dssp SCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTT
T ss_pred CCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCC
Confidence 9999999999999999999999999999999999999999998876432 235789999999555899999999987
Q ss_pred CcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe-cCCCEEEEEEccCCC
Q 001014 869 GNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT-TSGDVYLLEANPRAS 946 (1190)
Q Consensus 869 G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d-~~g~~~viEiNpR~~ 946 (1190)
|+++.++.... ..+. | .......|++.++++..+++.+.+.++++++|++|++++||+++ .+|++||||+|||++
T Consensus 218 G~~~~~~~~~~~~~~~--~-~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~ 294 (451)
T 2vpq_A 218 GNVIHLGERDCTIQRR--M-QKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQ 294 (451)
T ss_dssp SCEEEEEEEEEEEEET--T-EEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred CCEEEEeccccchhcc--c-cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCC
Confidence 88765542111 1110 1 01122346656999999999999999999999999999999997 688899999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCC-------------Cc-----ccCCCce--ee
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLP-------------FE-----KFQGCDV--LL 1006 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~-------------~~-----~~~~~~~--~l 1006 (1190)
++++++..++|+|++++++++++|.+++.... .......++...+++ .. ..+++.. ++
T Consensus 295 ~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~ 372 (451)
T 2vpq_A 295 VEHPVTEMVTGIDLVKLQLQVAMGDVLPYKQE--DIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESAC 372 (451)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCCSCCGG--GCCCCSEEEEEEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCC
T ss_pred CceehhhHHhCCCHHHHHHHHHCCCCCCCccc--ccCcCceEeeeEeeeeccccccCCCCCEEeEEECCCCCCccccccc
Confidence 99999899999999999999999998762110 011111121111100 00 0112111 11
Q ss_pred --CCc-----ccccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1007 --GPE-----MRSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1007 --g~~-----~rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
|.+ ...+|+|++.|+|.++|..++.++...
T Consensus 373 ~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~ 409 (451)
T 2vpq_A 373 YTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSE 409 (451)
T ss_dssp CTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 222 234899999999999999999988654
No 40
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=100.00 E-value=1.3e-38 Score=395.93 Aligned_cols=365 Identities=17% Similarity=0.242 Sum_probs=287.8
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i 713 (1190)
..+||||+|+|++ +++++++++++|+++++++++++..+.....+|+.+.. ..+.+.++++
T Consensus 27 m~~kILI~g~Gei-----------a~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~ 95 (675)
T 3u9t_A 27 SIQRLLVANRGEI-----------ACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAA 95 (675)
T ss_dssp CCSEEEECCCHHH-----------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHH
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHH
Confidence 3689999999985 88889999999999999999988888777788987752 2467999999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee-
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI- 791 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~- 791 (1190)
+++.++|+|++.+|.. +...++..++ +.| ++++||++++++++.||..++++|+++|||+|++..
T Consensus 96 a~~~~~daI~pg~gflsE~~~~a~~le----------~~G---i~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~ 162 (675)
T 3u9t_A 96 ALASGAQAIHPGYGFLSENADFARACE----------EAG---LLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHG 162 (675)
T ss_dssp HHHTTCSEEECCSSTTTTCHHHHHHHH----------TTT---CEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCS
T ss_pred HHHhCcCEEEeCCcccccCHHHHHHHH----------HcC---CceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCcccc
Confidence 9999999999988765 3446788888 899 999999999999999999999999999999999875
Q ss_pred -ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEec
Q 001014 792 -AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 792 -~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
+.+.+++.++++++|||+||||+.++||+||++|+|.+|+.++++.+.. .+++.+++||+||++.+|++|++++|
T Consensus 163 ~~~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d 242 (675)
T 3u9t_A 163 EAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFAD 242 (675)
T ss_dssp CCCCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEc
Confidence 7899999999999999999999999999999999999999999876432 23457899999996669999999999
Q ss_pred CCCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCC
Q 001014 867 SCGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 867 ~~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
++|+++.+...+. +... | .......|++.++++..+++.+.+.++++++||+|++++||+++.+|++||+|||||+
T Consensus 243 ~~G~vv~l~~rd~s~qr~--~-qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~dG~~~~iEiNpR~ 319 (675)
T 3u9t_A 243 RHGHCLYLNERDCSIQRR--H-QKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRL 319 (675)
T ss_dssp SSSCEEEEEEEECCCBSS--S-SBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCTTSCBCBCEEESSC
T ss_pred CCCCEEEEeccccceeec--c-ceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEeccccc
Confidence 9899877653321 1111 1 1122234776799999999999999999999999999999999778899999999999
Q ss_pred CCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCc---cc---C-------------CCceee
Q 001014 946 SRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFE---KF---Q-------------GCDVLL 1006 (1190)
Q Consensus 946 ~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~---~~---~-------------~~~~~l 1006 (1190)
+++++++..++|+|++++++++++|++++... .......+++...+++.+ .| + ++....
T Consensus 320 ~~~~~~te~~tGvdl~~~~l~~a~G~~l~~~~--~~~~~~g~ai~~ri~aedp~~~f~P~~G~l~~~~~p~~~~gvr~d~ 397 (675)
T 3u9t_A 320 QVEHPVTEAITGLDLVAWQIRVARGEALPLTQ--EQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDS 397 (675)
T ss_dssp CTTHHHHHHTTTCCHHHHHHHHHTTCCCSCCT--TTCCCCSEEEEEEEESCCTTTTSCCCCCBCSEEECCCCCTTEEEEE
T ss_pred cCCchhhhhhcCCCHHHHHHHHHCCCCCCCCc--cccccCcceeEEEEEeccCcccccCCCCEEEEEECCCCCCCEEEEe
Confidence 99999999999999999999999999987321 122334455555444211 11 1 111111
Q ss_pred C----Ccc-----cccceeeeeeCCHHHHHHHHHHHcC
Q 001014 1007 G----PEM-----RSTGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1007 g----~~~-----rs~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
+ .+. ...|.|++.|.|.++|+.++.++..
T Consensus 398 ~~~~G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~ 435 (675)
T 3u9t_A 398 GVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLA 435 (675)
T ss_dssp SCCTTCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhh
Confidence 1 111 1267899999999999999988764
No 41
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-37 Score=363.05 Aligned_cols=343 Identities=16% Similarity=0.251 Sum_probs=270.7
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCCCcc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~d~V 722 (1190)
+||||+|+|+. +.+++++++++|++++++++++..+... .+|..+..+ .+.+.+.+++ +++|+|
T Consensus 2 ~~Ililg~g~~-----------g~~~~~a~~~~G~~v~~~~~~~~~~~~~--~~~~~~~~~~~d~~~l~~~~--~~~d~v 66 (380)
T 3ax6_A 2 KKIGIIGGGQL-----------GKMMTLEAKKMGFYVIVLDPTPRSPAGQ--VADEQIVAGFFDSERIEDLV--KGSDVT 66 (380)
T ss_dssp CEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESSTTCTTGG--GSSEEEECCTTCHHHHHHHH--HTCSEE
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCCchhh--hCceEEECCCCCHHHHHHHH--hcCCEE
Confidence 78999999863 5667999999999999999987765433 566655544 4588888888 679999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
++.++... ..++..++ +.| ++ ++++++++.+++||..++++|+++|||+|++..+++.++ ++
T Consensus 67 ~~~~e~~~-~~~~~~l~----------~~g---i~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~ 128 (380)
T 3ax6_A 67 TYDLEHID-VQTLKKLY----------NEG---YK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DV 128 (380)
T ss_dssp EESCSCSC-HHHHHHHH----------HTT---CE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HH
T ss_pred EecccCCC-HHHHHHHH----------HCC---Ce-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HH
Confidence 98776543 35566777 889 88 569999999999999999999999999999999999887 66
Q ss_pred HHhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee-
Q 001014 803 KEIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI- 880 (1190)
Q Consensus 803 ~~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~- 880 (1190)
++++||+|+||..++ +|+|+.+++|.+|+.++++ .+++||+||+.|.|++|.++++++|++..+++.+..
T Consensus 129 ~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~~~~~~ 200 (380)
T 3ax6_A 129 REFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK--------GETYLEEFVEIEKELAVMVARNEKGEIACYPVVEMYF 200 (380)
T ss_dssp HTTCSSEEEEESCCC-----EEEECSGGGGGGCCC--------SSEEEEECCCEEEEEEEEEEECSSCCEEEEEEEEEC-
T ss_pred HhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc--------CCEEEEeccCCCeeEEEEEEECCCCCEEEECCeeeee
Confidence 789999999999999 9999999999999876543 679999999559999999999888898888887766
Q ss_pred -ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCC
Q 001014 881 -EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHP 959 (1190)
Q Consensus 881 -~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~ 959 (1190)
...+.+. ....|.. ++++..+++++++.+++++||++|++++||+++++|++||+|+|||++++.+++..++|+|
T Consensus 201 ~~~~~~~~---~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~~~~~~ 276 (380)
T 3ax6_A 201 DEDANICD---TVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTS 276 (380)
T ss_dssp -------C---EEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHHHBSSC
T ss_pred cccCCeeE---EEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehhhcccc
Confidence 4433321 2234654 8999999999999999999999999999999977889999999999999888878889999
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccCCeeEEe--ec-----c------C-CCcccCCCceee-CC----cccccceeeeee
Q 001014 960 LAKYAALVMSGKSLNDLGFTKEVIPKHVSVK--EA-----V------L-PFEKFQGCDVLL-GP----EMRSTGEVMGID 1020 (1190)
Q Consensus 960 l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk--~~-----~------~-~~~~~~~~~~~l-g~----~~rs~G~v~~~g 1020 (1190)
+++.++++++|.++++...... ...+. .. . . .+ ..|+++.++ |+ ..+.+|+|++.|
T Consensus 277 ~~~~~~~~~~g~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~~~~~~lg~v~~~g 351 (380)
T 3ax6_A 277 QFEQHIRAIMNLPLGSTELLIP----AVMVNLLGEEGYYGKPALIGLEEAL-AIEGLSLHFYGKKETRPYRKMGHFTVVD 351 (380)
T ss_dssp HHHHHHHHHTTCCCCCCCBCSC----EEEEEEEBCTTCCBSEEEESHHHHH-TSTTEEEEECCCSCBCBTCEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCCCccccCc----eEEEEEecccccccccccchhHHHh-cCCCCEEEecCCCCCCCCCeeEEEEEEe
Confidence 9999999999999986532211 11111 00 0 0 01 345554544 54 357899999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 001014 1021 MSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1021 ~~~~eA~~ka~~~~~~ 1036 (1190)
+|.++|..++..+...
T Consensus 352 ~~~~~a~~~~~~~~~~ 367 (380)
T 3ax6_A 352 RDVERALEKALRAKKI 367 (380)
T ss_dssp SSHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998754
No 42
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=100.00 E-value=2.4e-37 Score=372.16 Aligned_cols=364 Identities=20% Similarity=0.246 Sum_probs=282.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec-C-------CcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE-P-------LTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~-p-------~~~e~v~~i~ 714 (1190)
.|||||+|+|+. +.+++++++++|+++++++++++..+.....+|+.+.. | .+.+.+++++
T Consensus 2 ~k~ilI~g~g~~-----------~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~ 70 (449)
T 2w70_A 2 LDKIVIANRGEI-----------ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAA 70 (449)
T ss_dssp CSEEEECCCHHH-----------HHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCcHH-----------HHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 479999999874 67889999999999999987766555455578877764 2 4579999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--e
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG--I 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~--~ 791 (1190)
+++++|+|++.+|.. ....++..++ +.| ++++||+++++.++.||..++++|+++|||+|++. .
T Consensus 71 ~~~~~d~v~~~~g~~~e~~~~~~~~e----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~ 137 (449)
T 2w70_A 71 EITGAVAIHPGYGFLSENANFAEQVE----------RSG---FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGP 137 (449)
T ss_dssp HHHTCCEEECCSSTTTTCHHHHHHHH----------HTT---CEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSC
T ss_pred HHcCCCEEEECCCCcccCHHHHHHHH----------HcC---CceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccc
Confidence 999999999987743 2224567777 889 99999999999999999999999999999999997 8
Q ss_pred ecCHHHH-HHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEec
Q 001014 792 AKSEADA-LAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALAD 866 (1190)
Q Consensus 792 ~~s~~e~-~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~d 866 (1190)
+.+.+++ .++++++|||+||||..++||+|+.+++|.+|+.++++.+... ++..+++||+||++++|++|+++++
T Consensus 138 ~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~ 217 (449)
T 2w70_A 138 LGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLAD 217 (449)
T ss_dssp CCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEc
Confidence 8999999 8899999999999999999999999999999999998876432 2356899999996569999999998
Q ss_pred CCCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCC
Q 001014 867 SCGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRA 945 (1190)
Q Consensus 867 ~~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~ 945 (1190)
.+|+++..+.... ..+.... .....|++.++++..+++.+.+.+++++||++|++++||+++. |++||||+|||+
T Consensus 218 ~~G~~~~~~~~~~~~~~~~~~---~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R~ 293 (449)
T 2w70_A 218 GQGNAIYLAERDCSMQRRHQK---VVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRI 293 (449)
T ss_dssp TTSCEEEEEEEEEEEEETTEE---EEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECSC
T ss_pred CCCCEEEEeceecccccCCcc---eeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECCC
Confidence 7788865553211 1111101 1123466568999999999999999999999999999999955 899999999999
Q ss_pred CCChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCC------------c-----ccCCC--ceee
Q 001014 946 SRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPF------------E-----KFQGC--DVLL 1006 (1190)
Q Consensus 946 ~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~------------~-----~~~~~--~~~l 1006 (1190)
+++.+++..++|+|++++++++++|.+++... .......+++...++|. . ..+++ +.++
T Consensus 294 ~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~v~~~~~~ 371 (449)
T 2w70_A 294 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQ--EEVHVRGHAVECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHI 371 (449)
T ss_dssp CTTHHHHHHHHCCCHHHHHHHHHHTCCCSSCG--GGCCCCSEEEEEEEECBCTTTCCBCCEECCEEECCCSTTEEEECCC
T ss_pred CccchHHHHHhCCCHHHHHHHHHCCCCCCCch--hccccceeEEEEeecccCccccCCCCCEeceEECCCCCcEEEEecc
Confidence 99999988999999999999999999886210 00111122221111100 0 01121 1111
Q ss_pred --CC-----cccccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1007 --GP-----EMRSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1007 --g~-----~~rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
|. ....+|+|++.|+|.++|..++.++...
T Consensus 372 ~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~ 408 (449)
T 2w70_A 372 YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQE 408 (449)
T ss_dssp CTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhh
Confidence 22 1234799999999999999999988653
No 43
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=4.1e-37 Score=368.41 Aligned_cols=370 Identities=20% Similarity=0.289 Sum_probs=275.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~~~~~d 169 (1190)
+++||||+|+|+. |++++++++++|++|++++++++.+. ...+|..+..+. +.+.+.++++++++|
T Consensus 18 ~~~~ili~g~g~~-----------g~~~~~a~~~~G~~v~~v~~~~~~~~--~~~ad~~~~~~~~d~~~l~~~~~~~~~d 84 (433)
T 2dwc_A 18 SAQKILLLGSGEL-----------GKEIAIEAQRLGVEVVAVDRYANAPA--MQVAHRSYVGNMMDKDFLWSVVEREKPD 84 (433)
T ss_dssp TCCEEEEESCSHH-----------HHHHHHHHHHTTCEEEEEESSTTCHH--HHHSSEEEESCTTCHHHHHHHHHHHCCS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCCChh--hhhcceEEECCCCCHHHHHHHHHHcCCC
Confidence 4579999999953 78899999999999999998887543 456777776554 788999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAM-KTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l-~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
+|++.++... ... ...++..|+ ++||+++++++++||..++++| +++|||+|++..+++.+++.++++++|
T Consensus 85 ~V~~~~e~~~-~~~------~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g 156 (433)
T 2dwc_A 85 AIIPEIEAIN-LDA------LFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIG 156 (433)
T ss_dssp EEEECSSCSC-HHH------HHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHC
T ss_pred EEEECcccCC-HHH------HHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcC
Confidence 9999987432 221 234777898 6789999999999999999999 899999999999999999999999999
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC--CCCcEEEeeecC-CCeeeeEEEEEeC--CCcE--EEEEeee
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS--LTSQVLVEKSLL-GWKEYELEVMRDL--ADNV--VIICSIE 321 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vlVEe~I~-G~~E~sv~v~~d~--~g~~--~~~~~~e 321 (1190)
||+||||..++||+|+.++++.+|+.++++.+.... ....++||+||+ | .|+++.++++. +|+. .++...+
T Consensus 157 -~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g-~E~sv~~~~~~~~~G~~~~~~~~~~~ 234 (433)
T 2dwc_A 157 -YPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFD-VEVTELAVRHFDENGEIVTTFPKPVG 234 (433)
T ss_dssp -SSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCS-EEEEECCEEEECTTSCEEEEEECCEE
T ss_pred -CCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCC-eeEEEEEEecccCCCCEeEEEecccc
Confidence 999999999999999999999999999988765431 246899999999 7 99999999975 6774 3333334
Q ss_pred eeCCCCcccccE-EEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchH--HHH
Q 001014 322 NVDPMGVHTGDS-ITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA--LAS 398 (1190)
Q Consensus 322 ~~~~~g~~~g~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~--l~~ 398 (1190)
+... .++. ..+.|+. ++++..+++++.+.+++++||+. |++++||++++ + ++||+|||||++++.. +..
T Consensus 235 ~~~~----~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~-G~~~ve~~~~~-~-~~~viEiN~R~~~~~~~~~~~ 306 (433)
T 2dwc_A 235 HYQI----DGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGL-GIFGVEMFVKG-D-KVWANEVSPRPHDTGMVTLAS 306 (433)
T ss_dssp EEES----SSSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSS-EECEEEEEEET-T-EEEEEEEESSCCGGGGGHHHH
T ss_pred eEEE----cCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCe-eEEEEEEEEeC-C-cEEEEEEeCCcCCCcceehhH
Confidence 3321 1332 2346876 99999999999999999999995 99999999996 4 8999999999999843 445
Q ss_pred HHhCCCHHHHHHHHHcCCCCCCC------CccccCCCCcc--ccCCcCe---E-----EeeeceeeecccCCCCcccCCC
Q 001014 399 KATGFPIAKMAAKLSVGYSLDQI------PNDITKKTPAS--FEPSIDY---V-----VTKIPRFAFEKFPGSEPLLTTQ 462 (1190)
Q Consensus 399 ~atG~~l~~~~~~~alG~~l~~~------~~~i~~~~~~~--f~p~~~~---v-----~~k~p~~~~~~~~~~~~~l~~~ 462 (1190)
.++|+|++++++++++|.+++.. .....+....+ +.+..+. + ....|.|.+..+.+.. ...
T Consensus 307 ~~~g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~~~~~~~~i~g~~~~~~~pg~~v~~~~~~~---~~~ 383 (433)
T 2dwc_A 307 HPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGYSPRFRGLVKALSVPNATVRLFGKPE---AYV 383 (433)
T ss_dssp SCTTCSHHHHHHHHHHTCCCCCEEETTEEEECCSSCEEEEEEECSSCEESCEEECHHHHTTSTTEEEEECCCSE---ECT
T ss_pred hccCCCHHHHHHHHHcCCCCCcccccccccccccccEEEEEEEcCCCCcCcCcchHHHHhhCCCcEEEEecCCC---CCC
Confidence 56799999999999999988741 11111111101 1111100 0 0233444333332221 233
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 463 MKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 463 ~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
.+++|+|++.|+|++||++|+.++++ +.+.|.
T Consensus 384 ~~~lg~v~~~g~~~~ea~~~~~~~~~~i~~~~~ 416 (433)
T 2dwc_A 384 GRRLGIALAWDKDVEVAKRKAEMVAHMIELRTR 416 (433)
T ss_dssp TCEEEEEEEECSSHHHHHHHHHHHHHTCEEECT
T ss_pred CCeEEEEEEEeCCHHHHHHHHHHHHhheEEEee
Confidence 45689999999999999999999987 555554
No 44
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=2.5e-37 Score=370.33 Aligned_cols=360 Identities=18% Similarity=0.226 Sum_probs=275.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC-CcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP-LTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~d 720 (1190)
..+||||+|+|+. +..++++++++|+++++++++|+.+.. ..+|+.+..+ .+.+.+.++++++++|
T Consensus 18 ~~~~ili~g~g~~-----------g~~~~~a~~~~G~~v~~v~~~~~~~~~--~~ad~~~~~~~~d~~~l~~~~~~~~~d 84 (433)
T 2dwc_A 18 SAQKILLLGSGEL-----------GKEIAIEAQRLGVEVVAVDRYANAPAM--QVAHRSYVGNMMDKDFLWSVVEREKPD 84 (433)
T ss_dssp TCCEEEEESCSHH-----------HHHHHHHHHHTTCEEEEEESSTTCHHH--HHSSEEEESCTTCHHHHHHHHHHHCCS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEECCCCChhh--hhcceEEECCCCCHHHHHHHHHHcCCC
Confidence 4579999999873 566799999999999999999876543 3577777655 4689999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHH-HHcCCCCCCceeecCHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAII-KELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l-~~~gIp~p~~~~~~s~~e~~ 799 (1190)
+|++.++... ..++..++ +.| + .+||+++++.++.||..++++| +++|||+|++..+.+.+++.
T Consensus 85 ~V~~~~e~~~-~~~~~~l~----------~~g---i-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~ 149 (433)
T 2dwc_A 85 AIIPEIEAIN-LDALFEFE----------KDG---Y-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELY 149 (433)
T ss_dssp EEEECSSCSC-HHHHHHHH----------HTT---C-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHH
T ss_pred EEEECcccCC-HHHHHHHH----------hcC---C-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHH
Confidence 9999887543 35666777 788 7 6789999999999999999999 89999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC--CCCcEEEEEecCCcceEEEeEEecC--CCc--EEE
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD--PERPVLIDKYLSDAIEIDVDALADS--CGN--VVI 873 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~--~~~~vliEefI~~g~E~~v~v~~d~--~G~--v~~ 873 (1190)
++++++|||+||||..++||+|+.+++|.+|+.++++.+.... ...+++||+||+.|.|++|.++++. +|+ +.+
T Consensus 150 ~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~ 229 (433)
T 2dwc_A 150 EACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTF 229 (433)
T ss_dssp HHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEE
T ss_pred HHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEecccCCCCEeEEE
Confidence 9999999999999999999999999999999999988654321 2468999999965999999999965 677 445
Q ss_pred EeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCCh--hh
Q 001014 874 GGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTV--PF 951 (1190)
Q Consensus 874 ~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~--~~ 951 (1190)
++..++... .|+..+.+.|..++++..+++.+++.+++++||++|++++||+++.+ ++||||+|||++++. ++
T Consensus 230 ~~~~~~~~~----~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~ 304 (433)
T 2dwc_A 230 PKPVGHYQI----DGDYHASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPRPHDTGMVTL 304 (433)
T ss_dssp ECCEEEEES----SSSEEEEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESSCCGGGGGHH
T ss_pred ecccceEEE----cCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCCcCCCcceeh
Confidence 555565532 45555555444599999999999999999999999999999999654 899999999999984 44
Q ss_pred hhcccCCCHHHHHHHHHcCCCCCC--------CCCCccccCCeeEEeeccC----------CCcccCCCceee-CC----
Q 001014 952 VSKAIGHPLAKYAALVMSGKSLND--------LGFTKEVIPKHVSVKEAVL----------PFEKFQGCDVLL-GP---- 1008 (1190)
Q Consensus 952 ~~~~~G~~l~~~~~~~~lG~~l~~--------~~~~~~~~~~~~~vk~~~~----------~~~~~~~~~~~l-g~---- 1008 (1190)
...++|+|++++++++++|.+++. +....... ...+..+.+ .....|+...++ |+
T Consensus 305 ~~~~~g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~--~~~v~~~~~~~~~~i~g~~~~~~~pg~~v~~~~~~~~~ 382 (433)
T 2dwc_A 305 ASHPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAA--THVIKAKVSGYSPRFRGLVKALSVPNATVRLFGKPEAY 382 (433)
T ss_dssp HHSCTTCSHHHHHHHHHHTCCCCCEEETTEEEECCSSCEE--EEEEECSSCEESCEEECHHHHTTSTTEEEEECCCSEEC
T ss_pred hHhccCCCHHHHHHHHHcCCCCCcccccccccccccccEE--EEEEEcCCCCcCcCcchHHHHhhCCCcEEEEecCCCCC
Confidence 566779999999999999998873 11111000 001111100 012235554444 33
Q ss_pred cccccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1009 EMRSTGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1009 ~~rs~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
..+++|+|++.|+|.++|..++..+...
T Consensus 383 ~~~~lg~v~~~g~~~~ea~~~~~~~~~~ 410 (433)
T 2dwc_A 383 VGRRLGIALAWDKDVEVAKRKAEMVAHM 410 (433)
T ss_dssp TTCEEEEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEEeCCHHHHHHHHHHHHhh
Confidence 3478999999999999999999988654
No 45
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=100.00 E-value=9.9e-37 Score=361.84 Aligned_cols=363 Identities=13% Similarity=0.168 Sum_probs=275.8
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCC-cHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPL-TVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~-~~e~v~~i~~~~~~d 720 (1190)
+.+||||+|+|.. ++.++++++++|+++++++. ++..+.....+|+.+..+. +.+.++++++++++|
T Consensus 6 ~~~~ilI~g~g~~-----------~~~~~~a~~~~G~~~v~v~~-~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d 73 (403)
T 4dim_A 6 DNKRLLILGAGRG-----------QLGLYKAAKELGIHTIAGTM-PNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLD 73 (403)
T ss_dssp CCCEEEEECCCGG-----------GHHHHHHHHHHTCEEEEEEC-SSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCS
T ss_pred CCCEEEEECCcHh-----------HHHHHHHHHHCCCEEEEEcC-CCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCC
Confidence 5689999999984 56679999999999999975 3322233457888777654 599999999999999
Q ss_pred ccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 721 GIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 721 ~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
+|++. +.+ ....++..++ +.| + +||+++++.++.||..++++|+++|||+|++..+.+.+++.
T Consensus 74 ~v~~~-~~~~~~~~~a~~~~----------~~g---l--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~ 137 (403)
T 4dim_A 74 GAATC-CLDTGIVSLARICD----------KEN---L--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELK 137 (403)
T ss_dssp EEECC-SCSTTHHHHHHHHH----------HHT---C--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHHHHH
T ss_pred EEEeC-CcchhHHHHHHHHH----------HcC---c--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHH
Confidence 99985 333 2335566666 778 5 69999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeee
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEH 879 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~ 879 (1190)
++++++|||+||||..++||+|+.+++|.+|+.++++.+.......+++||+|| .|.|++++++.. +|++.++++.++
T Consensus 138 ~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i-~g~e~sv~~~~~-~g~~~~~~~~~~ 215 (403)
T 4dim_A 138 NALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFI-EGYEFGAQAFVY-KNDVLFVMPHGD 215 (403)
T ss_dssp HHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECC-CSEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEcc-CCcEEEEEEEEE-CCEEEEEEEecc
Confidence 999999999999999999999999999999999999988777667789999999 789999999986 578887776665
Q ss_pred eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc-ceeEEEEEecCCCEEEEEEccCCCCCh--hhhhccc
Q 001014 880 IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCG-LMNCQYAITTSGDVYLLEANPRASRTV--PFVSKAI 956 (1190)
Q Consensus 880 ~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G-~~~ief~~d~~g~~~viEiNpR~~~s~--~~~~~~~ 956 (1190)
....+.++.......|. .++++..+++.+++.+++++||++| ++++||++ ++|++||+|+|||++++. .+++.++
T Consensus 216 ~~~~~~~~~~~~~~~p~-~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~-~~~~~~~iEiN~R~~~~~~~~~~~~~~ 293 (403)
T 4dim_A 216 ETYMSHTAVPVGHYVPL-DVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMIL-KDNEVYIIELTGRVGANCLPELVEINY 293 (403)
T ss_dssp EEEESSSEEEEEEEESC-CSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-ETTEEEEEEEESSCCSTTHHHHHHHHH
T ss_pred eeccCCCCcceeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEE-ECCcEEEEEEcCCCCCCcHHHHHHHHh
Confidence 53333222222233355 5999999999999999999999997 99999999 488999999999999974 4678999
Q ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEe------------eccCCCcccCCCc---eee--CCc-------ccc
Q 001014 957 GHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVK------------EAVLPFEKFQGCD---VLL--GPE-------MRS 1012 (1190)
Q Consensus 957 G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk------------~~~~~~~~~~~~~---~~l--g~~-------~rs 1012 (1190)
|+|++++++++++|.+++++.........+..+. ...+|....++++ ... |.. ...
T Consensus 294 G~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~ 373 (403)
T 4dim_A 294 GIEYYKMIASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDC 373 (403)
T ss_dssp TSCHHHHHHHHHTTCCTHHHHTTCCSSCCEEEEEEECCSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGC
T ss_pred CcCHHHHHHHHHcCCCccccccccccccccceEEEEEecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCce
Confidence 9999999999999998842210000011110011 1111111111111 111 211 224
Q ss_pred cceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1013 TGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1013 ~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
.|.|+..|+|.++|..++.++...
T Consensus 374 ~g~vi~~~~~~~~a~~~~~~~~~~ 397 (403)
T 4dim_A 374 IGQIIVKEETLDKCKDKLDVIINN 397 (403)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHTT
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcc
Confidence 889999999999999999988653
No 46
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=100.00 E-value=2.6e-38 Score=393.60 Aligned_cols=323 Identities=20% Similarity=0.313 Sum_probs=216.7
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i~ 714 (1190)
.|||||+|+|.+ +++++++++++|+++++++++++..+.....+|+.+.. .++.+.+++++
T Consensus 2 ~~kiLIanrGei-----------a~riiraar~lGi~~vav~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a 70 (681)
T 3n6r_A 2 FNKILIANRGEI-----------ACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAI 70 (681)
T ss_dssp CCCBCBSCCHHH-----------HHHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHH
T ss_pred CCEEEEECCcHH-----------HHHHHHHHHHcCCEEEEEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHHH
Confidence 479999999985 88889999999999999988888777777788988762 34689999999
Q ss_pred hhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce--e
Q 001014 715 DLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG--I 791 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~--~ 791 (1190)
++.++|+|++.+|.. +...++..++ +.| ++++||++++++++.||..++++|+++|||+|++. .
T Consensus 71 ~~~~~daI~pg~gflsE~~~~a~~le----------~~G---i~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~ 137 (681)
T 3n6r_A 71 RATGAQAVHPGYGFLSENSKFAEALE----------AEG---VIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGL 137 (681)
T ss_dssp HHTCCSCCBCCSSSSTTCHHHHHHHH----------TTT---CCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC----
T ss_pred HHhCcCEEEECCCccccCHHHHHHHH----------HcC---CceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccC
Confidence 999999999998764 3447788888 899 99999999999999999999999999999999984 7
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++++|||+||||+.++||+||++++|.+|+.++++.+.. .+++.+++||+||++++|++|++++|+
T Consensus 138 ~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~ 217 (681)
T 3n6r_A 138 IEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDS 217 (681)
T ss_dssp -----------------------------------------------------------------CCSCEEEEEEEECCS
T ss_pred cCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeC
Confidence 8899999999999999999999999999999999999999999887543 234568999999965699999999998
Q ss_pred CCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 868 CGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 868 ~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
+|+++.++..+. +... | .......|++.++++..+++.+.+.++++++||+|++++||+++.+|++||||||||++
T Consensus 218 ~G~vv~l~~rd~s~qr~--~-~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR~~ 294 (681)
T 3n6r_A 218 HGNGIYLGERECSIQRR--N-QKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQ 294 (681)
T ss_dssp SSCCEEEEEEECCCEET--T-EECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECSCC
T ss_pred CCCEEEEeeeecceecc--C-ccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccccC
Confidence 889887775442 2211 1 11222347767999999999999999999999999999999998788899999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccC
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVL 994 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~ 994 (1190)
++++++..++|+|++++++++++|++++-.. .+.....+++...++
T Consensus 295 ~~~~~te~~tGvdl~~~~l~~a~G~~l~~~~--~~~~~~g~ai~~ri~ 340 (681)
T 3n6r_A 295 VEHPVTELITGVDLVEQMIRVAAGEPLSITQ--GDVKLTGWAIENRLY 340 (681)
T ss_dssp TTHHHHHHHHTCCHHHHHHHHHTSCCCSSCT--TTCCCCSEEEEEEEE
T ss_pred CCcHHhHHHhCCCHHHHHHHHHCCCCCCCCc--cccceeEEEEEEEEe
Confidence 9999999999999999999999999886221 122334455554443
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=3e-36 Score=359.90 Aligned_cols=375 Identities=18% Similarity=0.221 Sum_probs=282.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
+.+||||||+| ++|+ .+++++++. ++..+++.+...... ..+....+.+.+.+.+.++++++++|
T Consensus 20 ~~m~ilvlG~g------gre~-----ala~~l~~s~~v~~v~~~pgn~g~~---~~~~~~~i~~~d~~~l~~~a~~~~id 85 (442)
T 3lp8_A 20 GSMNVLVIGSG------GREH-----SMLHHIRKSTLLNKLFIAPGREGMS---GLADIIDIDINSTIEVIQVCKKEKIE 85 (442)
T ss_dssp CCEEEEEEECS------HHHH-----HHHHHHTTCTTEEEEEEEECCGGGT---TTSEECCCCTTCHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCC------hHHH-----HHHHHHHhCCCCCEEEEECCChHHh---hccceeecCcCCHHHHHHHHHHhCCC
Confidence 44699999999 4554 678888887 555555544322211 12222336777999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGE 249 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~ 249 (1190)
+|+++.+ ..+...+ .+.+++.|++++||+.++++++.||..+|++|+++|||+|++..+++.+++.+++++++
T Consensus 86 ~vv~g~E--~~l~~~~----~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g- 158 (442)
T 3lp8_A 86 LVVIGPE--TPLMNGL----SDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHK- 158 (442)
T ss_dssp EEEECSH--HHHHTTH----HHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSC-
T ss_pred EEEECCc--HHHHHHH----HHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcC-
Confidence 9998654 2221111 34688899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc--C--CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC
Q 001014 250 FPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA--S--LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP 325 (1190)
Q Consensus 250 ~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~--~--~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~ 325 (1190)
||+||||..+.||+|+.+++|.+|+.++++.++.. + ....++|||||+| +|+++.++.|++ .++.++..+.+..
T Consensus 159 ~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~ 236 (442)
T 3lp8_A 159 LPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEISFFTLVDGS-NPVILGVAQDYKT 236 (442)
T ss_dssp SSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEESS-CEEEEEEEEECCE
T ss_pred CcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEEEEEEEECCC-eEEEeEEeEeeee
Confidence 99999999999999999999999999999988742 1 1358999999999 999999998754 5655555554433
Q ss_pred C-----CcccccEEEEecCCCCCHHHHHHHHHH----HHHHHHHhCCc-cceEEEEEEEecCCCcEEEEEeCCCCCCc-h
Q 001014 326 M-----GVHTGDSITVAPAQTLTDKEYQRLRDY----SIAIIREIGVE-CGGSNVQFAVNPVDGEVMVIEMNPRVSRS-S 394 (1190)
Q Consensus 326 ~-----g~~~g~~~~~~Pa~~l~~~~~~~l~~~----a~~i~~~lg~~-~G~~~vef~~~~~~g~~~viEiNpR~~gs-~ 394 (1190)
. ++++|.+..+.|++.++++..+++.+. +.++++++|+. .|++++||++++ +| +||||+|||+++. .
T Consensus 237 ~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~~ 314 (442)
T 3lp8_A 237 IGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE-PKLLEYNVRFGDPET 314 (442)
T ss_dssp EEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTHH
T ss_pred cccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-eEEEEEecCCCCCch
Confidence 2 678888899999987999999999987 88999999883 499999999996 55 9999999999975 4
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCc-------cc--cCCcCeEEeee------cee-eecccCCC---
Q 001014 395 ALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPA-------SF--EPSIDYVVTKI------PRF-AFEKFPGS--- 455 (1190)
Q Consensus 395 ~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~-------~f--~p~~~~v~~k~------p~~-~~~~~~~~--- 455 (1190)
..+...+|.|+.+.+++++.|.. +++...+...... .| .|..+..+..+ |.. -| +.+.
T Consensus 315 ~~~~~~~~~dl~~~~~~~~~G~l-~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~i~g~~~~~~~~~~~~~--~ag~~~~ 391 (442)
T 3lp8_A 315 QSILPRLNSDFLKLLSLTAKGKL-GNESVELSKKAALCVVVASRGYPGEYKKNSIINGIENIEKLPNVQLL--HAGTRRE 391 (442)
T ss_dssp HHHGGGBCSCHHHHHHHHHHTCC-SSCCCCBCSCEEEEEEEEETTTTSSCCSSCEEBSHHHHHTCSSEEEE--ESSEEEE
T ss_pred hhhHHHhCCCHHHHHHHHHcCCC-CCCCceeccCcEEEEEEccCCCCCCCCCCCEeeCCcccccCCCcEEE--Eeeeecc
Confidence 45566789999999999999963 3332222111100 01 01111111111 110 01 1111
Q ss_pred CcccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccC
Q 001014 456 EPLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSG 493 (1190)
Q Consensus 456 ~~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g 493 (1190)
+..+.+...+++.|++.|+|++||.++|+++++ +.+.|
T Consensus 392 ~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~ 430 (442)
T 3lp8_A 392 GNNWVSDSGRVINVVAQGENLASAKHQAYAALDLLDWPD 430 (442)
T ss_dssp TTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTT
T ss_pred CCeEEecCCeEEEEEEecCCHHHHHHHHHHHhcccCCCC
Confidence 345667778999999999999999999999997 55555
No 48
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=100.00 E-value=2.1e-36 Score=360.32 Aligned_cols=373 Identities=19% Similarity=0.202 Sum_probs=281.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC--eEEEEccCCCCCCCCccCcce--EEECCCCHHHHHHHHHHcC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY--EVILINSNPATIMTDPGLADR--TYITPMTPELVEQVLEKER 167 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~--~vi~v~~~~~~~~~~~~~ad~--~~i~p~~~~~v~~i~~~~~ 167 (1190)
++||||||+| ++|| .++++|++.+. ++++...|+... ..++. ..+.+.+.+.+.+++++++
T Consensus 3 ~mkvlviG~g------gre~-----ala~~l~~s~~v~~v~~~pgn~g~~----~~~~~~~~~~~~~d~~~l~~~a~~~~ 67 (431)
T 3mjf_A 3 AMNILIIGNG------GREH-----ALGWKAAQSPLADKIYVAPGNAGTA----LEPTLENVDIAATDIAGLLAFAQSHD 67 (431)
T ss_dssp CEEEEEEECS------HHHH-----HHHHHHTTCTTEEEEEEEECCHHHH----HCTTCEECCCCTTCHHHHHHHHHHTT
T ss_pred CcEEEEECCC------HHHH-----HHHHHHHhCCCCCEEEEECCCHHHh----hhcccceecCCcCCHHHHHHHHHHhC
Confidence 3599999999 5565 78899988863 455554343321 12221 3356778999999999999
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHc
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEI 247 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i 247 (1190)
+|+|+++.+.... ..+ .+.|++.|++++||+.++++++.||..+|++|+++|||+|++..+++.+++.++++++
T Consensus 68 id~vv~g~e~~l~--~~~----~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~ 141 (431)
T 3mjf_A 68 IGLTIVGPEAPLV--IGV----VDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQK 141 (431)
T ss_dssp EEEEEECSHHHHH--TTH----HHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHH
T ss_pred cCEEEECCchHHH--HHH----HHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHc
Confidence 9999997652221 111 3468889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----CCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeee
Q 001014 248 GEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA----SLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENV 323 (1190)
Q Consensus 248 g~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~ 323 (1190)
+ ||+||||..+.||+|+.+++|.+|+.++++.++.. .....++|||||+| +|+++.++.|++ +++.++..+.+
T Consensus 142 g-~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~ 218 (431)
T 3mjf_A 142 G-APIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMVDGE-NVLPMATSQDH 218 (431)
T ss_dssp C-SSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEEESS-CEEECCCBEEC
T ss_pred C-CeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEEcCC-EEEEEEeeEec
Confidence 9 99999999999999999999999999999887632 12468999999999 999999998764 56655544433
Q ss_pred CC-----CCcccccEEEEecCCCCCHHHHHHHHHH----HHHHHHHhCCc-cceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 324 DP-----MGVHTGDSITVAPAQTLTDKEYQRLRDY----SIAIIREIGVE-CGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 324 ~~-----~g~~~g~~~~~~Pa~~l~~~~~~~l~~~----a~~i~~~lg~~-~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
.. .++++|.+..+.|++.++++..+++.+. +.++++++|+. .|++|+||++++ +|+++|||+|||++..
T Consensus 219 ~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g~~~viEiN~R~G~~ 297 (431)
T 3mjf_A 219 KRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DGQPKVIEFNCRFGDP 297 (431)
T ss_dssp CEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TSCEEEEEECGGGSTT
T ss_pred eecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CCCeEEEEEecCCCCc
Confidence 22 2678889899999988999999999886 67777777763 499999999997 7789999999999853
Q ss_pred -hHHHHHHhCCCHHHHHHHHHcCCCCCCCCccccCC-----------CCccccCCcCeEEeeec--------eeeecccC
Q 001014 394 -SALASKATGFPIAKMAAKLSVGYSLDQIPNDITKK-----------TPASFEPSIDYVVTKIP--------RFAFEKFP 453 (1190)
Q Consensus 394 -~~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~-----------~~~~f~p~~~~v~~k~p--------~~~~~~~~ 453 (1190)
...+...+|.|+++.+++++.|.. +++...+... .|..+ ..+..+..++ .|+...-.
T Consensus 298 ~~~~i~~~~g~dl~~~~~~~~~G~l-~~~~~~~~~~~a~~vv~a~~gyp~~~--~~g~~i~~~~~~~~~~~~~~~ag~~~ 374 (431)
T 3mjf_A 298 ETQPIMLRMRSDLVELCLAGTQGKL-NEKTSDWDERPSLGVVLAAGGYPADY--RQGDVIHGLPQQEVKDGKVFHAGTKL 374 (431)
T ss_dssp THHHHHHHBCSCHHHHHHHHHTTCG-GGCCCCBCSSCEEEEEEEETTTTSCC--CCCCBCBCCCSSCBTTEEEEESSEEE
T ss_pred HHHHHHHHHCCCHHHHHHHHHcCCC-CCCCccccCCcEEEEEecCCCcCccC--CCCCEeeCCccccCCCcEEEEeeeEe
Confidence 455668899999999999999963 2221111111 11111 1111110010 11111101
Q ss_pred CCCc-ccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccC
Q 001014 454 GSEP-LLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSG 493 (1190)
Q Consensus 454 ~~~~-~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g 493 (1190)
. +. .+-+...+++.|++.|.|++||.++|+++++ +.+.|
T Consensus 375 ~-~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~ 415 (431)
T 3mjf_A 375 N-GNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEG 415 (431)
T ss_dssp C-TTSCEEECSSEEEEEEEECSSHHHHHHHHHHHHTTCBCTT
T ss_pred c-CCCEEEecCCeEEEEEEecCCHHHHHHHHHHHhccCCCCC
Confidence 1 33 5667788999999999999999999999997 56565
No 49
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=100.00 E-value=5.2e-37 Score=358.93 Aligned_cols=329 Identities=15% Similarity=0.196 Sum_probs=245.4
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCc--HHHHHHHhhhcCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLT--VEDVLNVIDLERPE 720 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~--~e~v~~i~~~~~~d 720 (1190)
+|||+|||||+. +.+++++++++||+|+++|++|++++.+ ++|+.|..+.. .+.++.+ .+++|
T Consensus 1 MK~I~ilGgg~~-----------g~~~~~~Ak~~G~~vv~vd~~~~~~~~~--~aD~~~~~~~~~d~~~~~~~--~~~~D 65 (363)
T 4ffl_A 1 MKTICLVGGKLQ-----------GFEAAYLSKKAGMKVVLVDKNPQALIRN--YADEFYCFDVIKEPEKLLEL--SKRVD 65 (363)
T ss_dssp CCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCTTCTTTT--TSSEEEECCTTTCHHHHHHH--HTSSS
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCChhHh--hCCEEEECCCCcCHHHHHHH--hcCCC
Confidence 489999999984 6777999999999999999999988766 69999887654 4444444 46799
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++.+++.....++..+.+ +.| + .+||+++++++++||.++|++|+++|||+|++..
T Consensus 66 ~v~~~~~~~~~~~~~~~~~~---------~~~---~-~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~--------- 123 (363)
T 4ffl_A 66 AVLPVNENLACIEFLNSIKE---------KFS---C-PVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP--------- 123 (363)
T ss_dssp EEEECCCCHHHHHHHHHHGG---------GCS---S-CBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC---------
T ss_pred EEEECCCChhHHHHHHHHHH---------HCC---C-ccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee---------
Confidence 99999998766555555540 445 4 4789999999999999999999999999999853
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHI 880 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~ 880 (1190)
+|||+||||+.++||+|+.+++|.+++.. ....+++|+|+ .|.|++|++++|+.+.++.....++.
T Consensus 124 ----ig~P~vvKp~~g~g~~gv~~v~~~~~~~~---------~~~~~~~ee~i-~g~e~sv~~~~d~~~~~~~~~~~~~~ 189 (363)
T 4ffl_A 124 ----SKPPYFVKPPCESSSVGARIIYDDKDLEG---------LEPDTLVEEYV-EGEVVSLEVVGDGSHFAVVKETLVHI 189 (363)
T ss_dssp ----SSSCEEEECSSCCTTTTCEEEC------C---------CCTTCEEEECC-CSEEEEEEEEEESSCEEECCCEEEEE
T ss_pred ----cCCCEEEEECCCCCCcCeEEeccHHHhhh---------hccchhhhhhc-cCcEEEEEEEEECCeEEEEEEEEecc
Confidence 68999999999999999999999988743 24579999999 89999999999976544444444444
Q ss_pred ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCCh-hhhhcccCCC
Q 001014 881 EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTV-PFVSKAIGHP 959 (1190)
Q Consensus 881 ~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~-~~~~~~~G~~ 959 (1190)
. +.++.....|++ .. +++++++.+++++||++|++++||+++ ++++||||+|||+++.. +++..++|+|
T Consensus 190 ~----~~~~~~~~~p~~-~~----~~~~~~a~~~~~~l~~~G~~~vef~~~-~~~~~viEiN~R~~g~~~~~~~~~~g~d 259 (363)
T 4ffl_A 190 D----ETYDCHMVTPLP-AN----PLFRQISHDLAANLPLKGIMDVEAIFG-PKGLRVIEIDARFPSQTPTVVYYSSGIN 259 (363)
T ss_dssp C----TTSCEEEEEECC-CC----HHHHHHHHHHHHTTTCEEEEEEEEEEE-TTEEEEEEEECSCCSSHHHHHHHHHCCC
T ss_pred C----Ccccceeecchh-HH----HHHHHHHHHHHHhCCccceeeeeeEEe-CCeEEEEEEeCCCCCChHHHHHHHHCcC
Confidence 2 333344444543 22 467889999999999999999999994 67799999999998765 4788999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccCCeeEEeecc---------------------CCCcccCCCceeeCCcccccceeee
Q 001014 960 LAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAV---------------------LPFEKFQGCDVLLGPEMRSTGEVMG 1018 (1190)
Q Consensus 960 l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~---------------------~~~~~~~~~~~~lg~~~rs~G~v~~ 1018 (1190)
++++++++++|.+++..... ...+....... ..|...++.+..+...+..+|+|++
T Consensus 260 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vi~ 336 (363)
T 4ffl_A 260 LIELLFRAFTDGVEEIRAIP---ENKYCIYEHLMFGENGVLIPVGEQVLSMGSDYGKFYEEPGIEIFLCKGEYPVFTMVF 336 (363)
T ss_dssp HHHHHHHHTTTCCCCC-------CCCEEEEEEEEECGGGBEEECCHHHHTTCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred HHHHHHHHHCCCCCCccccC---CCceEEEEEEecCCCCccCCCCceEEecCCCeeEEEecCCCCCEecCCCCceEEEEE
Confidence 99999999999988743221 11111111100 0111122222233334567899999
Q ss_pred eeCCHHHHHHHHHHHcC
Q 001014 1019 IDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1019 ~g~~~~eA~~ka~~~~~ 1035 (1190)
.|+|.+||+.|+.++..
T Consensus 337 ~G~~~~eA~~k~~~al~ 353 (363)
T 4ffl_A 337 WGKDREETGAKRCKGLS 353 (363)
T ss_dssp EESSHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHH
Confidence 99999999999988764
No 50
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=100.00 E-value=3.2e-36 Score=359.81 Aligned_cols=362 Identities=14% Similarity=0.165 Sum_probs=272.9
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCC--c----HHHHHHHh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPL--T----VEDVLNVI 714 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~--~----~e~v~~i~ 714 (1190)
..+|+++|+|+|.. ...++++++++|+++++++++++..+.....+|+.+..+. + .+.+.+++
T Consensus 3 ~~~k~l~Il~~~~~-----------~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~ 71 (425)
T 3vot_A 3 KRNKNLAIICQNKH-----------LPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTF 71 (425)
T ss_dssp CCCCEEEEECCCTT-----------CCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCChh-----------HHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhh
Confidence 46789999998873 2345899999999999999999888777767787776543 2 45566677
Q ss_pred hhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC
Q 001014 715 DLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS 794 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s 794 (1190)
++.++|+|++..+.... ..+...+ ..| + .|++++++.+++||..+|++|+++|||+|++..+++
T Consensus 72 ~~~~id~V~~~~e~~~~-~~a~l~e----------~lg---l--pg~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~ 135 (425)
T 3vot_A 72 VEFPFDGVMTLFEPALP-FTAKAAE----------ALN---L--PGLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHT 135 (425)
T ss_dssp HHSCCSEEECCCGGGHH-HHHHHHH----------HTT---C--SSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESS
T ss_pred hhcCCCEEEECCchhHH-HHHHHHH----------HcC---C--CCCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCc
Confidence 78899999986554322 2233334 667 4 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh---------CCCCcEEEEEecCCcceEEEeEEe
Q 001014 795 EADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV---------DPERPVLIDKYLSDAIEIDVDALA 865 (1190)
Q Consensus 795 ~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~---------~~~~~vliEefI~~g~E~~v~v~~ 865 (1190)
.+++.+ .++|||+||||..++||+||.+|+|.+||+++++.+... ....++++|+|| .|.|++|+++.
T Consensus 136 ~~~~~~--~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i-~G~e~sv~~~~ 212 (425)
T 3vot_A 136 LADLEN--RKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFI-DGPEFAIETLS 212 (425)
T ss_dssp GGGGTT--CCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECC-CSCEEEEEEEE
T ss_pred HHHHHH--hhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEe-cCcEEEEEEEE
Confidence 988753 579999999999999999999999999999999876432 245689999999 89999999998
Q ss_pred cCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCC-cceeEEEEEecCCCEEEEEEccC
Q 001014 866 DSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVC-GLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 866 d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~-G~~~ief~~d~~g~~~viEiNpR 944 (1190)
+ +|++.+.++.++....+.+..+.....|+ .++++..+++.+.+.+++++||+. |++++||+++++|++||||+|||
T Consensus 213 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~Pa-~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEiN~R 290 (425)
T 3vot_A 213 I-QGNVHVLSIGYKGNSKGPFFEEGVYIAPA-QLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGAR 290 (425)
T ss_dssp E-TTEEEEEEEEEEECCCCSBCCCCEEEESC-CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEEESS
T ss_pred e-CCcEEEEeEEEEeccCCCccccceEeecc-cCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEEecC
Confidence 7 57888888888877666666655556676 599999999999999999999996 99999999988899999999999
Q ss_pred CCCC---hhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCC--------------CcccCCC-ceee
Q 001014 945 ASRT---VPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLP--------------FEKFQGC-DVLL 1006 (1190)
Q Consensus 945 ~~~s---~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~--------------~~~~~~~-~~~l 1006 (1190)
++|+ ..++..++|+|+++++++.++|....... .....+........+++ ....|++ +..+
T Consensus 291 ~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~i~g~~~~~~~p~v~~~~~ 369 (425)
T 3vot_A 291 IGGSGVSHYIVKESTGINFMQLVLQNALKPLESSEF-EGEIRPVRTAGNYIIPVQGSGTFEKIDGLEEVKQRQEVKRVFQ 369 (425)
T ss_dssp CGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGGS-CSCCCCSSEEEEEECCCCSCEEEEEEETHHHHHTCTTEEEEEE
T ss_pred CCCCCchHHHHHHHHCCCHHHHHHHHHCCCcccccc-ccccccceEEEEEEEcCCCCeEEEecCCHHHHhcCCCeEEEEE
Confidence 9885 34678899999999999999996554211 11111111111111110 0112332 1111
Q ss_pred ----CCc-------ccccceeeeeeCCHHHHHHHHHHHcC
Q 001014 1007 ----GPE-------MRSTGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1007 ----g~~-------~rs~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
|.. ...+|+|++.|+|.++|..++.++..
T Consensus 370 ~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~ 409 (425)
T 3vot_A 370 FMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDD 409 (425)
T ss_dssp CCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHH
T ss_pred EecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence 221 12368999999999999999888754
No 51
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=1.6e-36 Score=360.38 Aligned_cols=361 Identities=17% Similarity=0.144 Sum_probs=269.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHH-HHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQAC-KALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~-~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
.+||||||+| ++|+ .++ +.++++| +|++++.||.. ..+|.. ++.+.+.++++++++|+
T Consensus 15 ~~~vlviG~G------gr~~-----a~a~~~a~~~g-~v~~~~~np~~-----~~~d~~----id~~~l~~~~~~~~~d~ 73 (412)
T 1vkz_A 15 AVRVHILGSG------GREH-----AIGWAFAKQGY-EVHFYPGNAGT-----KRDGTN----HPYEGEKTLKAIPEEDI 73 (412)
T ss_dssp -CEEEEEECS------HHHH-----HHHHHHHHTTC-EEEEEECCTTG-----GGTSEE----CCCCTHHHHHTSCSSCE
T ss_pred cCEEEEECCC------HHHH-----HHHHHHHhCCC-CEEEECCChhh-----hccccc----CCHHHHHHHHHHcCCCE
Confidence 3599999999 4453 334 4457889 99999766654 334443 36788999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+++.+ .++ . +++++.++. ++||+++++.+++||..+|++|+++|||+|++..+++.+++.+++++++ |
T Consensus 74 V~~~~E--~~~---~----a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~g-~ 142 (412)
T 1vkz_A 74 VIPGSE--EFL---V----EGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFS-P 142 (412)
T ss_dssp ECCSSG--GGT---C----C-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSC-S
T ss_pred EEECCc--HHH---H----HHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhcC-C
Confidence 998543 322 1 345677776 8899999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC-
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP- 325 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~- 325 (1190)
|+||||..++||+|+.+++|.+|+.++++.++... ...+++|||||+| +|+++++++|+. .++.++..+++..
T Consensus 143 PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~ 220 (412)
T 1vkz_A 143 PYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVVNGR-NFVILPFVRDYKRL 220 (412)
T ss_dssp SEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEEETT-EEEECCCCEECCEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-cEEEEEEEECCC-EEEEeeeeEeeeec
Confidence 99999999999999999999999999998887532 1248999999999 999999998643 3333333343322
Q ss_pred ----CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCCCchH-
Q 001014 326 ----MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA- 395 (1190)
Q Consensus 326 ----~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~- 395 (1190)
.+++++++..+.|++ ++++..+++++++.+++++| ++. |++++||++++ +| +||+|+|||++++.+
T Consensus 221 ~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~-G~~~ve~~~~~-~g-~~viEiN~R~g~~~~~ 296 (412)
T 1vkz_A 221 MDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYR-GFLYLGLMLHD-GD-PYILEYNVRLGDPETE 296 (412)
T ss_dssp ETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEEEEEEEET-TE-EEEEEEESSCCTTHHH
T ss_pred cCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEEEEEEEEC-CC-cEEEEEecCCCCCcce
Confidence 266778888899998 99999999999999999999 785 99999999996 56 999999999998754
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCc--------cccCCcCeEE-eeeceeeecccCCC---CcccCCCC
Q 001014 396 LASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPA--------SFEPSIDYVV-TKIPRFAFEKFPGS---EPLLTTQM 463 (1190)
Q Consensus 396 l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~--------~f~p~~~~v~-~k~p~~~~~~~~~~---~~~l~~~~ 463 (1190)
.+...+|+|+.+.+.+++.|. ++++... .+.... .+.|..+..+ +..|. .+.. .+. +..+.+..
T Consensus 297 ~~~~~~g~d~~~~~~~~~~g~-l~~~~~~-~~~a~~~~l~~~~~~~~~~~g~~i~l~~~~-~v~~-~g~~~~~~~~~~~~ 372 (412)
T 1vkz_A 297 VIVTLNPEGFVNAVLEGYRGG-KMEPVEP-RGFAVDVVLAARGYPDAPEKGKEITLPEEG-LIFF-AGVAEKDGKLVTNG 372 (412)
T ss_dssp HHHHHCHHHHHHHHHHHHHTS-CCCCCCC-CSEEEEEEEECTTTTTSCCCCCBCBCCSSC-CEEE-SSEEEETTEEEECS
T ss_pred eehhhcCCCHHHHHHHHhcCC-Ccccccc-CCeEEEEEEecCCCCCCCCCCCEeeeCCCC-cEEE-CcccccCCeEEeCC
Confidence 345569999999999988774 4443211 010000 0112222221 11122 1111 121 12245667
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 464 KSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 464 ~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
+++|+|++.|+|++||++|+.++++ +.+.|+
T Consensus 373 ~~vg~v~~~g~~~~ea~~~~~~~~~~i~~~g~ 404 (412)
T 1vkz_A 373 GRVLHCMGTGETKEEARRKAYELAEKVHFEGK 404 (412)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHHCBCTTC
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHhcceeeCCC
Confidence 8899999999999999999999996 666664
No 52
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=8.6e-37 Score=396.99 Aligned_cols=366 Identities=19% Similarity=0.263 Sum_probs=289.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecC---------CcHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEP---------LTVEDVLN 712 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p---------~~~e~v~~ 712 (1190)
..+||||+|+|.+ +++++++++++|+++++++++++..+.+...+|+.|..+ ++.+.+++
T Consensus 3 ~~kkVLIagrGei-----------a~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~ 71 (1150)
T 3hbl_A 3 QIKKLLVANRGEI-----------AIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIID 71 (1150)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHH
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHH
Confidence 3589999999985 788899999999999999999998888888999998542 35889999
Q ss_pred HhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCce-
Q 001014 713 VIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGG- 790 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~- 790 (1190)
+++++++|+|++.+|.. ....++..++ +.| ++++||++++++++.||..++++|+++|||+|++.
T Consensus 72 ~a~~~~~DaI~pg~gflsE~~~~a~~le----------~~G---i~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~ 138 (1150)
T 3hbl_A 72 VAKQANVDAIHPGYGFLSENEQFARRCA----------EEG---IKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTD 138 (1150)
T ss_dssp HHHHTTCSEEECTTTTSTTCHHHHHHHH----------HTT---CEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS
T ss_pred HHHHhCCCEEEECCCcccccHHHHHHHH----------HCC---CCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccc
Confidence 99999999999998864 3446788888 899 99999999999999999999999999999999998
Q ss_pred -eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEe
Q 001014 791 -IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALA 865 (1190)
Q Consensus 791 -~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~ 865 (1190)
.+.+.+++.++++++|||+||||+.++||+||++|+|.+|+.++++.+... +++.+++||+||++.+|++|++++
T Consensus 139 ~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~ 218 (1150)
T 3hbl_A 139 GPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIG 218 (1150)
T ss_dssp SCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEE
Confidence 788999999999999999999999999999999999999999999875432 235789999999655899999999
Q ss_pred cCCCcEEEEeeeee-eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccC
Q 001014 866 DSCGNVVIGGIMEH-IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 866 d~~G~v~~~~i~e~-~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
|++|+++.+...+. +.... .......|++.++++..+++.+.+.++++++||+|++++||+++.+ ++||||||||
T Consensus 219 d~~G~vv~l~er~~s~qr~~---~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR 294 (1150)
T 3hbl_A 219 DEHGNIVHLFERDCSVQRRH---QKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPR 294 (1150)
T ss_dssp CSSSCEEEEEEEEEEEESSS---CEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECS
T ss_pred eCCCCEEEEEeeccceeccC---ceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCC
Confidence 98888875543321 22111 1123344777899999999999999999999999999999999655 9999999999
Q ss_pred CCCChhhhhcccCCCHHHHHHHHHcCCCCCC--CCCCc--cccCCeeEEeeccCCC---ccc---CC----------Cce
Q 001014 945 ASRTVPFVSKAIGHPLAKYAALVMSGKSLND--LGFTK--EVIPKHVSVKEAVLPF---EKF---QG----------CDV 1004 (1190)
Q Consensus 945 ~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~--~~~~~--~~~~~~~~vk~~~~~~---~~~---~~----------~~~ 1004 (1190)
++++++++..++|+|++++++++++|++++. +++.. ......+++.+.+... +.| +| ..+
T Consensus 295 ~~g~~~vte~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gv 374 (1150)
T 3hbl_A 295 VQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGV 374 (1150)
T ss_dssp CCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCCCCCEEECCCCTTE
T ss_pred CCCCcceeehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEeccCCccccCCCCceEEEEEcCCCCce
Confidence 9999999999999999999999999999985 33321 2344556666655421 111 11 111
Q ss_pred ee--CC--ccc-------c-cceeeeeeCCHHHHHHHHHHHcC
Q 001014 1005 LL--GP--EMR-------S-TGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1005 ~l--g~--~~r-------s-~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
.+ |. ... | .|.|++.|+|.++|+.|+.++..
T Consensus 375 r~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~ 417 (1150)
T 3hbl_A 375 RLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLR 417 (1150)
T ss_dssp EEEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHH
T ss_pred eccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHh
Confidence 22 10 111 1 57899999999999999988764
No 53
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=100.00 E-value=2e-36 Score=393.77 Aligned_cols=367 Identities=16% Similarity=0.228 Sum_probs=237.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeec--------CCcHHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~--------p~~~e~v~~i 713 (1190)
..+||||+|+|++ +++++++++++|+++++++++++..+.....+|+.|.. ..+.+.++++
T Consensus 30 m~kkILI~grGei-----------a~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~ 98 (1236)
T 3va7_A 30 PFETVLIANRGEI-----------AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINA 98 (1236)
T ss_dssp SCSEEEECCCHHH-----------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHH
T ss_pred CCCEEEEEcCCHH-----------HHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHH
Confidence 4689999999985 88889999999999999999988888777789998863 2468999999
Q ss_pred hhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc-ee
Q 001014 714 IDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG-GI 791 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~-~~ 791 (1190)
++++++|+|++.++.. +...++..++ +.| ++++||++++++++.||..++++|+++|||+|++ ..
T Consensus 99 a~~~~iDaI~pg~g~lsEn~~~a~~le----------~~G---i~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~ 165 (1236)
T 3va7_A 99 AKKTGAQAIIPGYGFLSENADFSDRCS----------QEN---IVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGL 165 (1236)
T ss_dssp HHHTTCSEEECCSSGGGGCHHHHHHHH----------TTT---CEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC----
T ss_pred HHHhCCCEEEECCccccccHHHHHHHH----------HCC---CCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEe
Confidence 9999999999998755 3456788888 899 9999999999999999999999999999999885 78
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCcEEEEEecCCcceEEEeEEecC
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE----VDPERPVLIDKYLSDAIEIDVDALADS 867 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~----~~~~~~vliEefI~~g~E~~v~v~~d~ 867 (1190)
+.+.+++.++++++|||+||||..++||+||.+|+|.+|+.++++.+.. .+.+.+++||+||++++|++|++++|+
T Consensus 166 v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg 245 (1236)
T 3va7_A 166 IKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDG 245 (1236)
T ss_dssp -------------------------------------------------------------------CCEEEEEEEEEES
T ss_pred cCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecC
Confidence 8899999999999999999999999999999999999999999887543 234568999999955699999999999
Q ss_pred CCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec-CCCEEEEEEccCCC
Q 001014 868 CGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT-SGDVYLLEANPRAS 946 (1190)
Q Consensus 868 ~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~-~g~~~viEiNpR~~ 946 (1190)
+|+++.++..+...+. +........|++.++++..+++.+.+.++++++||+|++++||+++. +|++||||||||++
T Consensus 246 ~g~vv~l~~rd~s~qr--~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~ 323 (1236)
T 3va7_A 246 FGKAIAIGERDCSLQR--RNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQ 323 (1236)
T ss_dssp SSCEEEEEEEEEEEEE--TTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCC
T ss_pred CceEEEEeeeeeeeee--cCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCC
Confidence 8888877655432111 11112233477779999999999999999999999999999999975 48999999999999
Q ss_pred CChhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCCCcc---------------cC-CCcee--e--
Q 001014 947 RTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEK---------------FQ-GCDVL--L-- 1006 (1190)
Q Consensus 947 ~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~---------------~~-~~~~~--l-- 1006 (1190)
++++++..++|+|++++++++++|++++... ........++...+++.+. ++ ++... .
T Consensus 324 g~~~~te~vtGvDlv~~~l~~a~G~~l~~~~--~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~gvrvd~~v~~ 401 (1236)
T 3va7_A 324 VEHPITEMVTGLDLVEWMLRIAANDSPDFDN--TKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPSWARVDTWVKK 401 (1236)
T ss_dssp TTHHHHHHHHCCCHHHHHHHHHTTCCCCGGG--CCCCCCSEEEEEEEESEETTTTTEECCEECCEEECCTTSEEEECCCT
T ss_pred CccHHHHHHHCCCHHHHHHHHHCCCCCCCcc--ccccccceEEEEEEecCCcccccCCCCceEEEEEcCCccEecccccC
Confidence 9999999999999999999999999876210 0122334445444432111 11 11110 0
Q ss_pred CCccc-----ccceeeeeeCCHHHHHHHHHHHcCC
Q 001014 1007 GPEMR-----STGEVMGIDMSFPIAFAKAQIAAGQ 1036 (1190)
Q Consensus 1007 g~~~r-----s~G~v~~~g~~~~eA~~ka~~~~~~ 1036 (1190)
|.... ..|.|++.|+|.++|..++.++...
T Consensus 402 G~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~ 436 (1236)
T 3va7_A 402 GTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNE 436 (1236)
T ss_dssp TCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhC
Confidence 11111 2577899999999999999888653
No 54
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=3.8e-36 Score=357.15 Aligned_cols=360 Identities=16% Similarity=0.141 Sum_probs=265.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHH-HHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFS-LQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~a-l~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
+++||||||||+. ++ ..+.+ ++++| ++++++.||.....+ +. ++.+.++++++++++|
T Consensus 14 ~~~~vlviG~Ggr--~~---------a~a~~~a~~~g-~v~~~~~np~~~~~d-----~~----id~~~l~~~~~~~~~d 72 (412)
T 1vkz_A 14 KAVRVHILGSGGR--EH---------AIGWAFAKQGY-EVHFYPGNAGTKRDG-----TN----HPYEGEKTLKAIPEED 72 (412)
T ss_dssp --CEEEEEECSHH--HH---------HHHHHHHHTTC-EEEEEECCTTGGGTS-----EE----CCCCTHHHHHTSCSSC
T ss_pred ccCEEEEECCCHH--HH---------HHHHHHHhCCC-CEEEECCChhhhccc-----cc----CCHHHHHHHHHHcCCC
Confidence 5679999999963 22 11433 57889 999998887664433 22 3688999999999999
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHH
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALA 800 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~ 800 (1190)
+|++. .+.+. ++..++ ..+ . ++||+++++.+++||..++++|+++|||+|++..+++.+++.+
T Consensus 73 ~V~~~--~E~~~-~a~~~~----------~l~---~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~ 135 (412)
T 1vkz_A 73 IVIPG--SEEFL-VEGVSN----------WRS---N-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELRE 135 (412)
T ss_dssp EECCS--SGGGT-CC---------------CT---T-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHH
T ss_pred EEEEC--CcHHH-HHHHHH----------Hhh---h-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHH
Confidence 99984 44332 334444 566 5 8899999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh---CC-CCcEEEEEecCCcceEEEeEEecCCCcEEEEee
Q 001014 801 IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV---DP-ERPVLIDKYLSDAIEIDVDALADSCGNVVIGGI 876 (1190)
Q Consensus 801 ~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~---~~-~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i 876 (1190)
+++++|||+||||..++||+||.+++|.+|+.++++.+... ++ ..+++||+|| .|+|++|++++|++ .++.+..
T Consensus 136 ~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i-~G~E~sv~~~~dg~-~~~~~~~ 213 (412)
T 1vkz_A 136 KIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFL-AGNELSAMAVVNGR-NFVILPF 213 (412)
T ss_dssp HHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECC-CSEEEEEEEEEETT-EEEECCC
T ss_pred HHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECC-cCcEEEEEEEECCC-EEEEeee
Confidence 99999999999999999999999999999999999887642 11 2489999999 59999999999754 2333332
Q ss_pred eeeeecc-----cccccccccccCCCCCCHHHHHHHHHHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 877 MEHIEQA-----GVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 877 ~e~~~~~-----g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
.++..+. +.++|+.....|++ ++++..+++++++.+++++| +++|++++||+++.+| +||||+|||++
T Consensus 214 ~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g 291 (412)
T 1vkz_A 214 VRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-PYILEYNVRLG 291 (412)
T ss_dssp CEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCC
T ss_pred eEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-cEEEEEecCCC
Confidence 2333221 45666666667876 99999999999999999999 8889999999997666 99999999999
Q ss_pred CChh-hhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEE--eec-cCCCc---------ccCCCceee-CC----
Q 001014 947 RTVP-FVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSV--KEA-VLPFE---------KFQGCDVLL-GP---- 1008 (1190)
Q Consensus 947 ~s~~-~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~v--k~~-~~~~~---------~~~~~~~~l-g~---- 1008 (1190)
++.+ .+...+|+|+.+++.+++.|. ++++.... .+..+ -.. -+|+. ..++ ..+. |+
T Consensus 292 ~~~~~~~~~~~g~d~~~~~~~~~~g~-l~~~~~~~----~~a~~~~l~~~~~~~~~~~g~~i~l~~~~-~v~~~g~~~~~ 365 (412)
T 1vkz_A 292 DPETEVIVTLNPEGFVNAVLEGYRGG-KMEPVEPR----GFAVDVVLAARGYPDAPEKGKEITLPEEG-LIFFAGVAEKD 365 (412)
T ss_dssp TTHHHHHHHHCHHHHHHHHHHHHHTS-CCCCCCCC----SEEEEEEEECTTTTTSCCCCCBCBCCSSC-CEEESSEEEET
T ss_pred CCcceeehhhcCCCHHHHHHHHhcCC-CccccccC----CeEEEEEEecCCCCCCCCCCCEeeeCCCC-cEEECcccccC
Confidence 8754 345568999999999988875 44432211 11110 000 01110 0133 2222 44
Q ss_pred -----cccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCC
Q 001014 1009 -----EMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDL 1051 (1190)
Q Consensus 1009 -----~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~ 1051 (1190)
.++.+|+|++.|+|.++|..++.++... +...| ++++.+++
T Consensus 366 ~~~~~~~~~vg~v~~~g~~~~ea~~~~~~~~~~-i~~~g-~~~r~di~ 411 (412)
T 1vkz_A 366 GKLVTNGGRVLHCMGTGETKEEARRKAYELAEK-VHFEG-KTYRRDIA 411 (412)
T ss_dssp TEEEECSSEEEEEEEEESSHHHHHHHHHHHHHH-CBCTT-CBCCTTCC
T ss_pred CeEEeCCCcEEEEEEeCCCHHHHHHHHHHHhcc-eeeCC-CEecCCCC
Confidence 2567899999999999999999988653 22345 66676653
No 55
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-35 Score=350.14 Aligned_cols=372 Identities=18% Similarity=0.218 Sum_probs=270.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHH-HHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKAL-KEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
|||||+|+|. +| ..+++++ +++|+++++++++.... ...++... .+.+.+.+.++++++++|+|
T Consensus 1 mkililG~g~------r~-----~a~a~~l~~~~g~~~v~~~~~~~~~---~~~~~~~~-~~~d~~~l~~~~~~~~~d~v 65 (417)
T 2ip4_A 1 MKVLVVGSGG------RE-----HALLWKAAQSPRVKRLYAAPGNAGM---EALAELVP-WNGDVEALADWALAEGIDLT 65 (417)
T ss_dssp CEEEEEESSH------HH-----HHHHHHHHTCSSCCEEEEEECCTTG---GGTSEECC-CCSCHHHHHHHHHHHTCCEE
T ss_pred CEEEEECCCH------HH-----HHHHHHHHhCCCCCEEEEECCCcch---hhhcccCC-CccCHHHHHHHHHHcCCCEE
Confidence 4899999993 22 2445555 55799988887543221 22334333 56789999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+++.+.. +.. .+ ...++..|++++|+++++++++.||..++++|+++|||+|++..+++.+++.+++++++ ||
T Consensus 66 ~~~~E~~--~~~--~~--~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P 138 (417)
T 2ip4_A 66 LVGPEAP--LVE--GI--ADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVG-VP 138 (417)
T ss_dssp EECSSHH--HHT--TH--HHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHC-SS
T ss_pred EECCchH--HHH--HH--HHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcC-CC
Confidence 9987632 111 11 34577889999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeCC-----C
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDP-----M 326 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~~-----~ 326 (1190)
+||||..++||+|+.++++.+|+.++++.+.....+..++|||||+| +|+++.+++|++ .+..++..+++.. .
T Consensus 139 ~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~~~G~-~~~~~~~~~~~~~~~~~~~ 216 (417)
T 2ip4_A 139 VVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLALTDGE-TILPLLPSQDHKRLLDGDQ 216 (417)
T ss_dssp EEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEEESSS-CEEECCCBEECCEEETTTE
T ss_pred EEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEEEeCC-EEEEcchheechhhccCCC
Confidence 99999999999999999999999999988763222368999999999 899999998432 2333333333221 2
Q ss_pred CcccccEEEEecCCCCCHHHHHHH-HHHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCCCchH-HHHH
Q 001014 327 GVHTGDSITVAPAQTLTDKEYQRL-RDYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA-LASK 399 (1190)
Q Consensus 327 g~~~g~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~-l~~~ 399 (1190)
++++|.+....|++ ++++..+++ ++.+.+++++| ++. |++|+||++++ +| +||+|||||++++.. ....
T Consensus 217 ~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~-G~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~ 292 (417)
T 2ip4_A 217 GPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYR-GVVYAGLMLTR-EG-PKVLEFNARFGDPEAQALLP 292 (417)
T ss_dssp EEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCC-EEEEEEEEECS-SC-EEEEEEESSCCTTHHHHHTT
T ss_pred CCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCce-EEEEEEEEEeC-CC-eEEEEEecCCCCcHHHHHHH
Confidence 56677778889998 999998888 66788888876 674 99999999996 66 999999999998754 3455
Q ss_pred HhCCCHHHHHHHHHcCCCCCCCCcccc-CCCCc-cc-------cCCcCeEEeee---ceeeecccCCC---CcccCCCCC
Q 001014 400 ATGFPIAKMAAKLSVGYSLDQIPNDIT-KKTPA-SF-------EPSIDYVVTKI---PRFAFEKFPGS---EPLLTTQMK 464 (1190)
Q Consensus 400 atG~~l~~~~~~~alG~~l~~~~~~i~-~~~~~-~f-------~p~~~~v~~k~---p~~~~~~~~~~---~~~l~~~~~ 464 (1190)
++|+|+.+.+++++.|. +++...... +.... .+ .|..+..+..+ |.+.+.. .|. ...+.+...
T Consensus 293 ~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~~~~~~v~~~~-~g~~~~~~~~~~~~~ 370 (417)
T 2ip4_A 293 LLENDLVELALRVAEGR-LAGTRLSWKEGAAACVVLAAPGYPESPRKGIPLHVPEPPEGVLVFH-AGTRREGGRLVSAGG 370 (417)
T ss_dssp TBCSCHHHHHHHHHHTC-GGGCCCCBCSSEEEEEEEECTTTTTSCCCCCBCBCCCCCTTEEEEE-SSEEESSSSEEECSS
T ss_pred HhCCCHHHHHHHHHcCC-CCcCCccccCCcEEEEEEeCCCCCCCCCCCCcccccCCCCCeEEEE-CceEeeCCeEEecCC
Confidence 79999999999999886 433211111 10000 00 01111100001 2211111 111 112334456
Q ss_pred cEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 465 SVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 465 s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
++|+|++.|.|++||++++.++++ +.+.|.
T Consensus 371 rv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~ 401 (417)
T 2ip4_A 371 RVLNVVGLGRDLKEALERAYAYIPQVGFPGA 401 (417)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHGGGSBCTTC
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCccCCc
Confidence 699999999999999999999986 565554
No 56
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3.1e-35 Score=350.42 Aligned_cols=369 Identities=18% Similarity=0.200 Sum_probs=274.3
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHH-HhCCCeEEEecCC-CCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSL-QSAGYETIMMNSN-PETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al-~~~G~~vi~v~~~-p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
||||||+|+. ....++++ +++|+++++++++ |... ..++.+. ++.+.+.++++++++++|+|
T Consensus 2 kililG~g~r-----------~~a~a~~l~~~~g~~~v~~~~~~~~~~----~~~~~~~-~~~d~~~l~~~~~~~~~d~v 65 (417)
T 2ip4_A 2 KVLVVGSGGR-----------EHALLWKAAQSPRVKRLYAAPGNAGME----ALAELVP-WNGDVEALADWALAEGIDLT 65 (417)
T ss_dssp EEEEEESSHH-----------HHHHHHHHHTCSSCCEEEEEECCTTGG----GTSEECC-CCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHH-----------HHHHHHHHHhCCCCCEEEEECCCcchh----hhcccCC-CccCHHHHHHHHHHcCCCEE
Confidence 7999999952 12235555 5689998887653 3221 1333333 56779999999999999999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
++..+......++..++ +.| ++++||+++++.++.||..++++|+++|||+|++..+.+.+++.+++
T Consensus 66 ~~~~E~~~~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~ 132 (417)
T 2ip4_A 66 LVGPEAPLVEGIADAFQ----------ARG---LLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYL 132 (417)
T ss_dssp EECSSHHHHTTHHHHHH----------HHT---CCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHH
T ss_pred EECCchHHHHHHHHHHH----------HCC---CCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH
Confidence 98766544346777777 889 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeec
Q 001014 803 KEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQ 882 (1190)
Q Consensus 803 ~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~ 882 (1190)
++++||+||||..++||+||.+++|.+|+.++++.+.......+++||+|| .|.|++|.+++|++ .+..+++.++...
T Consensus 133 ~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i-~g~E~sv~~~~~G~-~~~~~~~~~~~~~ 210 (417)
T 2ip4_A 133 EEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYL-EGEEATVLALTDGE-TILPLLPSQDHKR 210 (417)
T ss_dssp HHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECC-CSCEEEEEEEESSS-CEEECCCBEECCE
T ss_pred HHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECc-cCcEEEEEEEEeCC-EEEEcchheechh
Confidence 999999999999999999999999999999999876532223689999999 59999999999743 3454454443221
Q ss_pred -----ccccccccccccCCCCCCHHHHHHH-HHHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccCCCCChh-
Q 001014 883 -----AGVHSGDSACMIPTKTISSSCLDTI-SSWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPRASRTVP- 950 (1190)
Q Consensus 883 -----~g~~~gd~~~~~p~~~l~~~~~~~i-~~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR~~~s~~- 950 (1190)
.+.++|+.....|+. ++++..+++ ++++++++++| +++|++++||+++.+| +||+|+|||++++.+
T Consensus 211 ~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~ 288 (417)
T 2ip4_A 211 LLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKVLEFNARFGDPEAQ 288 (417)
T ss_dssp EETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEEEEEESSCCTTHHH
T ss_pred hccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEEEEEecCCCCcHHH
Confidence 245556655566776 999888888 67788888876 7889999999997666 999999999999854
Q ss_pred hhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeecc----CC-----------CcccCCCceee-CC------
Q 001014 951 FVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAV----LP-----------FEKFQGCDVLL-GP------ 1008 (1190)
Q Consensus 951 ~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~----~~-----------~~~~~~~~~~l-g~------ 1008 (1190)
.+...+|+|+.+++++++.|. +++..+. ....+ ++...+ +| +...+++..+. |+
T Consensus 289 ~i~~~~g~d~~~~~~~~~~g~-l~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~g~~i~~~~~~~~v~~~~~g~~~~~~~ 364 (417)
T 2ip4_A 289 ALLPLLENDLVELALRVAEGR-LAGTRLS--WKEGA-AACVVLAAPGYPESPRKGIPLHVPEPPEGVLVFHAGTRREGGR 364 (417)
T ss_dssp HHTTTBCSCHHHHHHHHHHTC-GGGCCCC--BCSSE-EEEEEEECTTTTTSCCCCCBCBCCCCCTTEEEEESSEEESSSS
T ss_pred HHHHHhCCCHHHHHHHHHcCC-CCcCCcc--ccCCc-EEEEEEeCCCCCCCCCCCCcccccCCCCCeEEEECceEeeCCe
Confidence 345679999999999999986 4432211 01111 111100 01 11113332222 43
Q ss_pred ----cccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCCh
Q 001014 1009 ----EMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK 1053 (1190)
Q Consensus 1009 ----~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~ 1053 (1190)
..| +|+|++.|+|.++|..++..+... +...| ++++.+++.+
T Consensus 365 ~~~~~~r-v~~v~~~g~~~~~a~~~~~~~~~~-i~~~~-~~~r~dig~~ 410 (417)
T 2ip4_A 365 LVSAGGR-VLNVVGLGRDLKEALERAYAYIPQ-VGFPG-AVYRRDIGRR 410 (417)
T ss_dssp EEECSSE-EEEEEEEESSHHHHHHHHHHHGGG-SBCTT-CBCCSCTTHH
T ss_pred EEecCCc-EEEEEEEcCCHHHHHHHHHHHHhc-CccCC-cEEccchhhH
Confidence 123 689999999999999999998764 33444 5667777643
No 57
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=100.00 E-value=4.3e-35 Score=352.36 Aligned_cols=378 Identities=19% Similarity=0.240 Sum_probs=276.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHH-HhCCCeEEEecC-CCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSL-QSAGYETIMMNS-NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al-~~~G~~vi~v~~-~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
+++||||||+|+. ....++++ +++|++++++++ ||.... .++.+..++.+.+.++++++++++
T Consensus 20 ~~~~iliiG~g~r-----------~~a~a~~~~~~~g~~~v~~~~~~~~~~~----~~~~~~~~~~d~~~l~~~~~~~~~ 84 (451)
T 2yrx_A 20 SHMNVLVIGRGGR-----------EHAIAWKAAQSPLVGKLYVAPGNPGIAD----VAELVHIDELDIEALVQFAKQQAI 84 (451)
T ss_dssp SSEEEEEEECSHH-----------HHHHHHHHHTCTTEEEEEEEECCTTGGG----TSEECCCCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHhcCCCCEEEEECCChhhhh----hCceeccCCCCHHHHHHHHHHcCC
Confidence 4579999999962 11223333 678999777754 443221 334444567789999999999999
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|+|++.++......+++.++ +.| ++++||+++++.++.||..++++|+++|||+|++..+++.+++.
T Consensus 85 d~vi~~~E~~~~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~ 151 (451)
T 2yrx_A 85 DLTIVGPEAPLASGIVDRFM----------AEG---LRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAK 151 (451)
T ss_dssp SEEEECSHHHHHTTHHHHHH----------HTT---CCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHH
T ss_pred CEEEECCchHHHHHHHHHHH----------HCC---CCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHH
Confidence 99998655443346777777 889 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----CCCcEEEEEecCCcceEEEeEEecCCCcEEEEe
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----PERPVLIDKYLSDAIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~ 875 (1190)
+++++++||+||||..+++|+|+.+++|.+|+.++++.+.... ...+++||+|| .|.|++|++++|++ .+..+.
T Consensus 152 ~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i-~G~E~sv~~~~dG~-~~~~~~ 229 (451)
T 2yrx_A 152 AYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYL-EGEEFSFMAFVNGE-KVYPLA 229 (451)
T ss_dssp HHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECC-CSEEEEEEEEEETT-EEEECC
T ss_pred HHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECC-cCcEEEEEEEEcCC-EEEEee
Confidence 9999999999999999999999999999999999998765421 13689999999 59999999999743 233333
Q ss_pred eeeeee-----cccccccccccccCCCCCCHHHHHHH-HHHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccC
Q 001014 876 IMEHIE-----QAGVHSGDSACMIPTKTISSSCLDTI-SSWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 876 i~e~~~-----~~g~~~gd~~~~~p~~~l~~~~~~~i-~~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
..++.. ..+.+.|+.....|+..++++..+++ ++++.+++++| ++.|++++||+++.+| +||||+|||
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R 308 (451)
T 2yrx_A 230 IAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG-PKVIEFNAR 308 (451)
T ss_dssp CBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESS
T ss_pred eEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecC
Confidence 333221 12456666666677766899988888 67788887765 6789999999997666 999999999
Q ss_pred CCCChh-hhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEeeccCC-----------Cccc-CCCceee-CCc-
Q 001014 945 ASRTVP-FVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLP-----------FEKF-QGCDVLL-GPE- 1009 (1190)
Q Consensus 945 ~~~s~~-~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~~~~-----------~~~~-~~~~~~l-g~~- 1009 (1190)
++++.+ .+..++|+|+.+++++++.|... ++........ ...+....+| +..+ +++..+. |+.
T Consensus 309 ~g~~~~~~i~~~~g~d~~~~~~~~~~g~~~-~~~~~~~~~~-~~~l~~~g~p~~~~~g~~i~~~~~~~~~~~v~~~G~~~ 386 (451)
T 2yrx_A 309 FGDPEAQVVLPRLKTDLVEAVLAVMDGKEL-ELEWTDEAVL-GVVLAAKGYPGAYERGAEIRGLDRISPDALLFHAGTKR 386 (451)
T ss_dssp CCTTHHHHHGGGBCSCHHHHHHHHHTTCCC-CCCBCSSEEE-EEEEEETTTTSSCCCCCEEBCGGGSCTTSEEEESSEEE
T ss_pred CCCcHHHHHHHHcCCCHHHHHHHHhcCCCC-CccccCCceE-EEEEecCCcCCCCCCCCcCcCccccCCCCEEEeCcccc
Confidence 999864 35668999999999999988643 3322110000 0011110011 1111 4443333 443
Q ss_pred --------ccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChh
Q 001014 1010 --------MRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKP 1054 (1190)
Q Consensus 1010 --------~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~ 1054 (1190)
.+.+|+|++.|+|.++|..++..+... +...| .+++.+++.+.
T Consensus 387 ~~~~~~~~~~rvg~v~~~g~~~~ea~~~~~~~~~~-i~~~~-~~~r~dig~~~ 437 (451)
T 2yrx_A 387 EGGAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAA-IDCDG-LFYRRDIGRRA 437 (451)
T ss_dssp ETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTT-CBCTT-EECCSCTTTTT
T ss_pred cCCeEEcCCCeEEEEEEEeCCHHHHHHHHHHHhhc-cccCC-eEechhhhhHH
Confidence 356889999999999999999998765 33455 67788877553
No 58
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=1.7e-36 Score=354.82 Aligned_cols=352 Identities=15% Similarity=0.137 Sum_probs=231.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
|+||||+|+|. ++++++++++++|++|++++++++.+. ...+|..++.| .+.+++ +++|+|
T Consensus 1 M~~Ililg~g~-----------~~~~~~~a~~~~G~~v~~~~~~~~~~~--~~~~~~~~~~~----~l~~~~--~~~d~v 61 (365)
T 2z04_A 1 MLTVGILGGGQ-----------LGWMTILEGRKLGFKFHVLEDKENAPA--CRVADRCFRTG----QISEFV--DSCDII 61 (365)
T ss_dssp -CEEEEECCSH-----------HHHHHHHHHGGGTCEEEEECSSSSCHH--HHHSSEEECGG----GHHHHH--HHCSEE
T ss_pred CCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEeCCCCCch--hhhccceeeHH----HHHHHh--hcCCEE
Confidence 36899999984 478999999999999999998776532 45677777655 667777 579999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
++.++.... .. .+.++. ++|++++++.++.||..++++|+++|+|+|++..++ .+++.+++++++ ||
T Consensus 62 ~~~~e~~~~-~~------~~~l~~----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~~-~P 128 (365)
T 2z04_A 62 TYEFEHIKD-EV------LEKCES----KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDALKSFK-LP 128 (365)
T ss_dssp EESSSCCCH-HH------HHHHTT----TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC----------------C
T ss_pred EECCCCCcH-HH------HHHHhh----hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHHHhcC-CC
Confidence 998864332 11 112322 779999999999999999999999999999999998 888888888999 99
Q ss_pred EEEecCCCC-CCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEeeeeeCCCCcc
Q 001014 252 LIIRPAFTL-GGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICSIENVDPMGVH 329 (1190)
Q Consensus 252 vVVKP~~g~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~~e~~~~~g~~ 329 (1190)
+||||..++ +|+|+.++++.+|+.++++.++. ...++||+||+ | +|+++.+++|.+|+++.++..+++...+.
T Consensus 129 ~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~---~~~~lvEe~i~~g-~e~sv~~~~d~~G~~~~~~~~~~~~~~~~- 203 (365)
T 2z04_A 129 VVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK---EESFIIEEFVKFE-AEISCIGVRDREGKTYFYPQPFNKHEEGI- 203 (365)
T ss_dssp EEEECC---------------------------------CEEEECCCCS-EEEEEEEEECTTCCEEECCEEEEEEETTE-
T ss_pred EEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc---CCCEEEEccCCCC-EEEEEEEEECCCCCEEEECCEEEEEeCCE-
Confidence 999999999 99999999999999999877642 46899999999 7 99999999988888877766665543222
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 001014 330 TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMA 409 (1190)
Q Consensus 330 ~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~ 409 (1190)
. .....|++ + .+++++.+.+++++||++ |++++||++++ +|++|++|+|||++++.+.+..++|.++++.+
T Consensus 204 -~-~~~~~p~~-~----~~~~~~~~~~~~~~lg~~-G~~~vd~~~~~-~g~~~~iEiN~R~~~~~~~~~~~~~~~~~~~~ 274 (365)
T 2z04_A 204 -L-IYNYVPYA-K----LKEAEEITKRLMELLDIV-GVFTVEFFLLK-DGRVLINEFAPRVHNTGHWTLDGAYTSQFENL 274 (365)
T ss_dssp -E-EEEEEEEE-C----CHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TSCEEEEEEESSCCGGGTTHHHHBSSCHHHHH
T ss_pred -e-EEEECCHh-H----HHHHHHHHHHHHHHcCCE-EEEEEEEEEeC-CCcEEEEEeccCcCCCceEEeeccccCHHHHH
Confidence 1 12456765 4 567899999999999996 99999999997 78899999999999876667789999999999
Q ss_pred HHHHcCCCCCCCCccccCCCCccccCCcCe---E--EeeeceeeecccCCCCcccCCCCCcEEEEEEEeCCHHHHHHHHH
Q 001014 410 AKLSVGYSLDQIPNDITKKTPASFEPSIDY---V--VTKIPRFAFEKFPGSEPLLTTQMKSVGEAMALGRTFQESFQKAL 484 (1190)
Q Consensus 410 ~~~alG~~l~~~~~~i~~~~~~~f~p~~~~---v--~~k~p~~~~~~~~~~~~~l~~~~~s~G~v~a~G~~~~ea~~ka~ 484 (1190)
++.++|.+++..... .......+.+..++ + ....|.|.++.| |. ..+....+|+|++.|+|+++|.+++.
T Consensus 275 ~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~~~~~~~lg~v~~~g~~~~~a~~~~~ 349 (365)
T 2z04_A 275 LRAITEMPLGSTELK-LPSGMVNILGKSYEEIPLKEILSVEGAKLYWY-GK---EKKPRRKVGHVNVVGRSKEEVVEKVE 349 (365)
T ss_dssp HHHHTTCCCCCCCBS-SCEEEEEEESCCGGGSCHHHHTTSTTEEEEEC-CC---CCCTTCEEEEEEEECSSHHHHHHHHH
T ss_pred HHHHhCCCCCCcccc-CCEEEEEEECCccccchHHHHhcCCCCEEEec-CC---CCCCCCeEEEEEEecCCHHHHHHHHH
Confidence 999999999875421 11000111111111 0 013355544444 22 33445668999999999999999999
Q ss_pred Hhhh-cCccCC
Q 001014 485 RSLE-CGFSGW 494 (1190)
Q Consensus 485 ~~l~-~~~~g~ 494 (1190)
++++ ..+.|.
T Consensus 350 ~~~~~i~~~~~ 360 (365)
T 2z04_A 350 RVFTLLKGSRE 360 (365)
T ss_dssp HHHHC------
T ss_pred HHHHHhhhccC
Confidence 9987 565554
No 59
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=100.00 E-value=8.6e-35 Score=349.75 Aligned_cols=373 Identities=18% Similarity=0.194 Sum_probs=267.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHH-HHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKAL-KEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
.+||||+|+|. +| ..+++++ +++|++++++++.... . ...++...+.+.+.+.+.++++++++|+
T Consensus 21 ~~~iliiG~g~------r~-----~a~a~~~~~~~g~~~v~~~~~~~~-~--~~~~~~~~~~~~d~~~l~~~~~~~~~d~ 86 (451)
T 2yrx_A 21 HMNVLVIGRGG------RE-----HAIAWKAAQSPLVGKLYVAPGNPG-I--ADVAELVHIDELDIEALVQFAKQQAIDL 86 (451)
T ss_dssp SEEEEEEECSH------HH-----HHHHHHHHTCTTEEEEEEEECCTT-G--GGTSEECCCCTTCHHHHHHHHHHTTCSE
T ss_pred CCEEEEECCCH------HH-----HHHHHHHHhcCCCCEEEEECCChh-h--hhhCceeccCCCCHHHHHHHHHHcCCCE
Confidence 46999999993 22 1334444 6689998887653221 1 2344443456778999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+++.+. .+.. .+ ...++..|++++|+++++++++.||..++++|+++|||+|++..+++.+++.+++++++ |
T Consensus 87 vi~~~E~--~~~~--~~--~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~ 159 (451)
T 2yrx_A 87 TIVGPEA--PLAS--GI--VDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKG-A 159 (451)
T ss_dssp EEECSHH--HHHT--TH--HHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC-S
T ss_pred EEECCch--HHHH--HH--HHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcC-C
Confidence 9986542 2111 11 34577899999999999999999999999999999999999999999999999999999 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE-EeeeeeCC
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVVII-CSIENVDP 325 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~-~~~e~~~~ 325 (1190)
|+||||..+++|+|+.+++|.+|+.++++.++... ...+++|||||+| +|+++.+++| |+.+.. ...+....
T Consensus 160 PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~~~~~~~~~~~~~~ 236 (451)
T 2yrx_A 160 PIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EEFSFMAFVN--GEKVYPLAIAQDHKR 236 (451)
T ss_dssp SEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EEEEEEEEEE--TTEEEECCCBEECCE
T ss_pred cEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cEEEEEEEEc--CCEEEEeeeEEeccc
Confidence 99999999999999999999999999998876531 1368999999999 9999999985 344333 22222211
Q ss_pred -----CCcccccEEEEecCCCCCHHHHHHH-HHHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCCCch
Q 001014 326 -----MGVHTGDSITVAPAQTLTDKEYQRL-RDYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSS 394 (1190)
Q Consensus 326 -----~g~~~g~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~ 394 (1190)
.++++|.+....|++.++++..+++ ++++.+++++| ++. |++++||++++ +| +||+|||||++++.
T Consensus 237 ~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~-G~~~ve~~~~~-~g-~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 237 AYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFL-GVLYAGLMATA-NG-PKVIEFNARFGDPE 313 (451)
T ss_dssp EETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCE-EEEEEEEEEET-TE-EEEEEEESSCCTTH
T ss_pred cccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCce-eEEEEEEEEeC-CC-cEEEEEecCCCCcH
Confidence 2567788888899877899988888 66777777766 664 99999999996 56 99999999999875
Q ss_pred H-HHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCcccc----C---CcCeEEeee----ceeeecccCCC---Cccc
Q 001014 395 A-LASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPASFE----P---SIDYVVTKI----PRFAFEKFPGS---EPLL 459 (1190)
Q Consensus 395 ~-l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~~f~----p---~~~~v~~k~----p~~~~~~~~~~---~~~l 459 (1190)
. ....++|+|+.+.+++++.|... ++...-.......+. | ..+..+..+ |.+.+..+ +. ...+
T Consensus 314 ~~~i~~~~g~d~~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~~g~p~~~~~g~~i~~~~~~~~~~~v~~~-G~~~~~~~~ 391 (451)
T 2yrx_A 314 AQVVLPRLKTDLVEAVLAVMDGKEL-ELEWTDEAVLGVVLAAKGYPGAYERGAEIRGLDRISPDALLFHA-GTKREGGAW 391 (451)
T ss_dssp HHHHGGGBCSCHHHHHHHHHTTCCC-CCCBCSSEEEEEEEEETTTTSSCCCCCEEBCGGGSCTTSEEEES-SEEEETTEE
T ss_pred HHHHHHHcCCCHHHHHHHHhcCCCC-CccccCCceEEEEEecCCcCCCCCCCCcCcCccccCCCCEEEeC-cccccCCeE
Confidence 4 34567999999999999888643 332110000000010 1 111111111 22222111 11 1124
Q ss_pred CCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccC
Q 001014 460 TTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSG 493 (1190)
Q Consensus 460 ~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g 493 (1190)
.+...++|+|++.|.|.+||++++.++++ +.+.|
T Consensus 392 ~~~~~rvg~v~~~g~~~~ea~~~~~~~~~~i~~~~ 426 (451)
T 2yrx_A 392 YTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDCDG 426 (451)
T ss_dssp EECSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTT
T ss_pred EcCCCeEEEEEEEeCCHHHHHHHHHHHhhccccCC
Confidence 45567899999999999999999999986 55554
No 60
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=100.00 E-value=3.3e-35 Score=350.07 Aligned_cols=381 Identities=15% Similarity=0.177 Sum_probs=280.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC--CeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG--YETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G--~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
++.||||||+|.. ...+++++++.+ .++++...||...... ....+...+.+.+.++++++++++
T Consensus 2 ~~mkvlviG~ggr-----------e~ala~~l~~s~~v~~v~~~pgn~g~~~~~--~~~~~~~~~~d~~~l~~~a~~~~i 68 (431)
T 3mjf_A 2 NAMNILIIGNGGR-----------EHALGWKAAQSPLADKIYVAPGNAGTALEP--TLENVDIAATDIAGLLAFAQSHDI 68 (431)
T ss_dssp -CEEEEEEECSHH-----------HHHHHHHHTTCTTEEEEEEEECCHHHHHCT--TCEECCCCTTCHHHHHHHHHHTTE
T ss_pred CCcEEEEECCCHH-----------HHHHHHHHHhCCCCCEEEEECCCHHHhhhc--ccceecCCcCCHHHHHHHHHHhCc
Confidence 3468999999974 344588887776 3566665554332111 111133456789999999999999
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|+|++..+......++..++ +.| ++++||+++++.++.||..++++|+++|||+|++..+++.+++.
T Consensus 69 d~vv~g~e~~l~~~~~~~l~----------~~G---i~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~ 135 (431)
T 3mjf_A 69 GLTIVGPEAPLVIGVVDAFR----------AAG---LAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAAL 135 (431)
T ss_dssp EEEEECSHHHHHTTHHHHHH----------HTT---CCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHH
T ss_pred CEEEECCchHHHHHHHHHHH----------hcC---CCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHH
Confidence 99998766555457888888 899 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceEEEeEEecCCCcEEEEe
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~ 875 (1190)
+++++++||+||||..+.+|+||.+++|.+|+.++++.+... ....+++||||| .|.|++|.+++|++ +++.++
T Consensus 136 ~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i-~G~E~sv~~~~dg~-~~~~~~ 213 (431)
T 3mjf_A 136 AYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFL-DGEEASFIVMVDGE-NVLPMA 213 (431)
T ss_dssp HHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECC-CSEEEEEEEEEESS-CEEECC
T ss_pred HHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEee-CCcEEEEEEEEcCC-EEEEEE
Confidence 999999999999999999999999999999999999886521 123589999999 68999999999865 666555
Q ss_pred eeeeeec-----ccccccccccccCCCCCCHHHHHHHHHH----HHHHHHHcCC--CcceeEEEEEecCCCEEEEEEccC
Q 001014 876 IMEHIEQ-----AGVHSGDSACMIPTKTISSSCLDTISSW----TIKLAKRLNV--CGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 876 i~e~~~~-----~g~~~gd~~~~~p~~~l~~~~~~~i~~~----a~~i~~~Lg~--~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
..+.... .|.+.|......|++.++++..+++.+. +.+.++++|+ +|++++||+++.+|++||||+|||
T Consensus 214 ~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g~~~viEiN~R 293 (431)
T 3mjf_A 214 TSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCR 293 (431)
T ss_dssp CBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSCEEEEEECGG
T ss_pred eeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCCeEEEEEecC
Confidence 5443222 2556666666778877999999998876 5677777665 799999999977778999999999
Q ss_pred CCCC-hhhhhcccCCCHHHHHHHHHcCCCCC-CCCCCccccCCeeEEeeccCC-----------Cccc--CCCce-eeCC
Q 001014 945 ASRT-VPFVSKAIGHPLAKYAALVMSGKSLN-DLGFTKEVIPKHVSVKEAVLP-----------FEKF--QGCDV-LLGP 1008 (1190)
Q Consensus 945 ~~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~-~~~~~~~~~~~~~~vk~~~~~-----------~~~~--~~~~~-~lg~ 1008 (1190)
++.. ...+...+|+|+++++++++.|..-. ++...... .-.+.+-..-+| +... +++.. |.|+
T Consensus 294 ~G~~~~~~i~~~~g~dl~~~~~~~~~G~l~~~~~~~~~~~-a~~vv~a~~gyp~~~~~g~~i~~~~~~~~~~~~~~~ag~ 372 (431)
T 3mjf_A 294 FGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERP-SLGVVLAAGGYPADYRQGDVIHGLPQQEVKDGKVFHAGT 372 (431)
T ss_dssp GSTTTHHHHHHHBCSCHHHHHHHHHTTCGGGCCCCBCSSC-EEEEEEEETTTTSCCCCCCBCBCCCSSCBTTEEEEESSE
T ss_pred CCCcHHHHHHHHHCCCHHHHHHHHHcCCCCCCCccccCCc-EEEEEecCCCcCccCCCCCEeeCCccccCCCcEEEEeee
Confidence 9864 44456789999999999999997322 11111100 000111111112 1111 12211 1233
Q ss_pred c------ccc----cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCCh
Q 001014 1009 E------MRS----TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK 1053 (1190)
Q Consensus 1009 ~------~rs----~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~ 1053 (1190)
. ..+ ++.|++.|+|+++|..+|+.+... +-..| .+++.+++.+
T Consensus 373 ~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~-i~~~~-~~~r~dig~~ 425 (431)
T 3mjf_A 373 KLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEG-IQWEG-VFCRKDIGYR 425 (431)
T ss_dssp EECTTSCEEECSSEEEEEEEECSSHHHHHHHHHHHHTT-CBCTT-EECCSCTTHH
T ss_pred EecCCCEEEecCCeEEEEEEecCCHHHHHHHHHHHhcc-CCCCC-ceeehhhHHH
Confidence 2 122 237889999999999999999875 34556 7788888653
No 61
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=100.00 E-value=7.3e-35 Score=348.04 Aligned_cols=372 Identities=18% Similarity=0.237 Sum_probs=272.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHH-HHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKAL-KEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+||||+|+|. +|+ .+++++ +++|++++++++.... . ...++...+.+.+.+.+.++++++++|+|
T Consensus 1 m~ililG~g~------r~~-----~~a~~~~~~~g~~~v~~~~~~~~-~--~~~~~~~~~~~~d~~~l~~~~~~~~~d~v 66 (424)
T 2yw2_A 1 MKVLVVGNGG------REH-----AIAWKVAQSPLVKELYVAKGNAG-I--WEIAKRVDISPTDVEKLAEFAKNEGVDFT 66 (424)
T ss_dssp CEEEEEESSH------HHH-----HHHHHHTTCTTCSEEEEEECCTT-G--GGTSEEECSCTTCHHHHHHHHHHHTCSEE
T ss_pred CEEEEECCCH------HHH-----HHHHHHhhCCCCCEEEEECCCcc-h--hhhcccccCCcCCHHHHHHHHHHcCCCEE
Confidence 4899999993 222 333444 5689998888653221 1 23455434567789999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+++.+ ..+.. .+ ...++..|++++||++++++++.||..++++|+++|||+|++..+++.+++.+++++++ ||
T Consensus 67 ~~~~E--~~~~~--~~--~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P 139 (424)
T 2yw2_A 67 IVGPE--APLVE--GI--VDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVG-AP 139 (424)
T ss_dssp EECSH--HHHHT--TH--HHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC-SS
T ss_pred EECCc--hHHHH--HH--HHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcC-Cc
Confidence 99654 22111 11 34678899999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE-Eeeeee---
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVVII-CSIENV--- 323 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~-~~~e~~--- 323 (1190)
+||||..++||+|+.+++|.+|+.++++.+.... ...+++|||||+| +|+++.++++ |+.+.. +..++.
T Consensus 140 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~~--G~~~~~~~~~~~~~~~ 216 (424)
T 2yw2_A 140 IVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEASYIVMIN--GDRYVPLPTSQDHKRL 216 (424)
T ss_dssp EEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE--TTEEEECCCBEECCEE
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEEEEEEEc--CCEEEeecceeecccc
Confidence 9999999999999999999999999998876532 1358999999999 9999999985 344333 222221
Q ss_pred -C-CCCcccccEEEEecCCCCCHHHHHHHH-HHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCCCch-
Q 001014 324 -D-PMGVHTGDSITVAPAQTLTDKEYQRLR-DYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSS- 394 (1190)
Q Consensus 324 -~-~~g~~~g~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~- 394 (1190)
+ ..++++|.+....|++.++++..++++ +.+.+++++| ++. |++++||++++ +| +||+|||||++++.
T Consensus 217 ~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~-G~~~ve~~~~~-~g-~~viEiN~R~g~~~~ 293 (424)
T 2yw2_A 217 LDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYR-GFLYAGLMITK-EG-PKVLEFNVRLGDPEA 293 (424)
T ss_dssp ETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCE-EEEEEEEEEET-TE-EEEEEEESSCCTTTH
T ss_pred ccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCce-eEEEEEEEEeC-CC-cEEEEEecCCCCcHH
Confidence 1 125667788888998778999988884 6788888776 674 99999999996 56 99999999999874
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCcccc--------CCcCeEEee------eceeeecccCCC---Cc
Q 001014 395 ALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPASFE--------PSIDYVVTK------IPRFAFEKFPGS---EP 457 (1190)
Q Consensus 395 ~l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~~f~--------p~~~~v~~k------~p~~~~~~~~~~---~~ 457 (1190)
..+..++|+|+.+.+++++.|. ++++... .+.....+. |..+..+.. .|.+.+.. .+. +.
T Consensus 294 ~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~-~~~a~~~~~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~-~g~~~~~~ 370 (424)
T 2yw2_A 294 QPILMRVKNDFLETLLNFYEGK-DVHIKED-ERYALDVVLASRGYPEKPETGKIIHGLDYLKSMEDVVVFH-AGTKKEGN 370 (424)
T ss_dssp HHHHHTBCSCHHHHHHHHHTTC-CCCCCBC-SSEEEEEEEECTTTTSSCCCCCBCBCHHHHHTSTTEEEEE-SSEEEETT
T ss_pred HHHHHHhCCCHHHHHHHHHcCC-CCccccc-CCcEEEEEEecCCCCCCCCCCCcCcCcccccCCCCeEEEE-cceEeeCC
Confidence 3456789999999999999885 5543211 111000000 111110000 12222211 121 12
Q ss_pred ccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 458 LLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 458 ~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
.+.+...++|+|++.|.|++||++++.++++ +.+.|.
T Consensus 371 ~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~ 408 (424)
T 2yw2_A 371 FTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCFEGM 408 (424)
T ss_dssp EEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTC
T ss_pred EEEecCCcEEEEEEEeCCHHHHHHHHHHHHhcceeCCc
Confidence 2445567799999999999999999999996 666664
No 62
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=100.00 E-value=5.5e-35 Score=359.22 Aligned_cols=309 Identities=19% Similarity=0.258 Sum_probs=249.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeE---------EEecCCC--CCcCccccCCcceeecC------
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYET---------IMMNSNP--ETVSTDYDTSDRLYFEP------ 704 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~v---------i~v~~~p--~~~s~~~~~ad~~~~~p------ 704 (1190)
..|||||+|+|.. ++.++++++++|++| +++.+.. +..+.....+|+.+..|
T Consensus 46 ~~kkILI~g~g~~-----------a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~ 114 (554)
T 1w96_A 46 VISKILIANNGIA-----------AVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNN 114 (554)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGG
T ss_pred cccEEEEECCCHH-----------HHHHHHHHHHcCCcceecccCceEEEEecccccccCChhhhhCCEEEEcCCCCccc
Confidence 3689999998884 788899999996554 5543311 12223345788888764
Q ss_pred --CcHHHHHHHhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHH
Q 001014 705 --LTVEDVLNVIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKE 781 (1190)
Q Consensus 705 --~~~e~v~~i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~ 781 (1190)
.+.+.++++++++++|+|++.+|.. ....++..++ +.| .+++++||+++++.++.||..++++|++
T Consensus 115 ~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~----------~~g-~~i~~~gp~~~a~~~~~dK~~~k~~l~~ 183 (554)
T 1w96_A 115 NYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLS----------QSK-RKVIFIGPPGNAMRSLGDKISSTIVAQS 183 (554)
T ss_dssp TTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHH----------HST-TCCEESSCCHHHHHHSCSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHH----------HcC-CeEEEeCCCHHHHHHHhCHHHHHHHHHH
Confidence 4589999999999999999987653 2223455555 433 1278999999999999999999999999
Q ss_pred cCCCCCCceee--------------------------cCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHH
Q 001014 782 LSIEQPKGGIA--------------------------KSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYL 835 (1190)
Q Consensus 782 ~gIp~p~~~~~--------------------------~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~ 835 (1190)
+|||+|++..+ .+.+++.++++++|||+||||..++||+||.+|+|.+|+.+++
T Consensus 184 ~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~ 263 (554)
T 1w96_A 184 AKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALY 263 (554)
T ss_dssp TTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHH
T ss_pred CCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHH
Confidence 99999998764 7889999999999999999999999999999999999999999
Q ss_pred HHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHHHH
Q 001014 836 ENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKL 914 (1190)
Q Consensus 836 ~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i 914 (1190)
+.+.......+++||+||++++|++|++++|++|+++.....+ .+...... .....|+..++++..+++.+++.++
T Consensus 264 ~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k---~~~~~P~~~l~~~~~~~i~~~a~~~ 340 (554)
T 1w96_A 264 HQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQK---IIEEAPVTIAKAETFHEMEKAAVRL 340 (554)
T ss_dssp HHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEE---EEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccc---eeeeCCCcCCCHHHHHHHHHHHHHH
Confidence 9877665567899999997679999999999878876543221 11110000 0112366568899999999999999
Q ss_pred HHHcCCCcceeEEEEEe-cCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCC
Q 001014 915 AKRLNVCGLMNCQYAIT-TSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 915 ~~~Lg~~G~~~ief~~d-~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
+++||++|++++||++| .+|++||||+|||++++++++..++|+|++++++++++|.++++
T Consensus 341 ~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~ 402 (554)
T 1w96_A 341 GKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHR 402 (554)
T ss_dssp HHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGG
T ss_pred HHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCccc
Confidence 99999999999999997 67899999999999999888878999999999999999998864
No 63
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=100.00 E-value=2.3e-36 Score=351.78 Aligned_cols=305 Identities=20% Similarity=0.295 Sum_probs=238.4
Q ss_pred CCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCC-----------CCccCcceEEECCC---
Q 001014 92 LRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIM-----------TDPGLADRTYITPM--- 154 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~-----------~~~~~ad~~~i~p~--- 154 (1190)
+|||+||.|| ++.|||. ||.+++++|++.||+|+.++.+++..+ .+....|..+..|.
T Consensus 3 kkkv~vl~GG-----~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 4fu0_A 3 NKKIAVIFGG-----NSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVVS 77 (357)
T ss_dssp CEEEEEEEEC-----SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSCTHHHHTTCGGGCGGGEEEEEEC
T ss_pred CCEEEEEECC-----CccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCCHHHhhcCcchhhhhcccccccc
Confidence 4699999887 4899995 689999999999999999975544321 11222222111111
Q ss_pred --C-----HHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 155 --T-----PELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 155 --~-----~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
. .+.....++..++|+|++.++|..+++..+ +++|+.+|+|++|+++.++.++.||..+|++|+++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~----q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip 153 (357)
T 4fu0_A 78 QNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTL----QGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGIS 153 (357)
T ss_dssp CCTTTCEEEEC----CEEEECSEEEECCCSHHHHSSHH----HHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCB
T ss_pred ccccccchhhhhhhhHhhcCCCEEEECCcCccccCHHH----HHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCC
Confidence 0 012334445668999999999999999988 89999999999999999999999999999999999999
Q ss_pred CCCeeecCCHH---HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeE
Q 001014 228 TPPSGIGNTLD---ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYEL 304 (1190)
Q Consensus 228 vp~~~~v~s~~---e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv 304 (1190)
+|++..+.+.+ .+.++.+++| ||+||||+++++|.|+.+|++.+||.+++..+... +..+++|+||+| +|+++
T Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~--~~~vlvE~~i~G-~e~~v 229 (357)
T 4fu0_A 154 VPKSVTFKRFNEEAAMKEIEANLT-YPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH--DTEVIVEETING-FEVGC 229 (357)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHCC-SSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCCS-EEEEE
T ss_pred CCCEEeecCCChHHHHHHHHHhcC-CCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc--CCeEEEEEecCC-EEEEE
Confidence 99998876544 3456677899 99999999999999999999999999999988766 568999999999 99999
Q ss_pred EEEEeCCCcEEEEEee----eeeCCCC-cccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCC
Q 001014 305 EVMRDLADNVVIICSI----ENVDPMG-VHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDG 379 (1190)
Q Consensus 305 ~v~~d~~g~~~~~~~~----e~~~~~g-~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g 379 (1190)
.++.+....+..+... ..+++.. +..+......|+. ++++..++++++|.+++++||++ |+++|||++++ +|
T Consensus 230 ~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~~~~~aLg~~-G~~~VDf~~~~-dg 306 (357)
T 4fu0_A 230 AVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCS-GFSRVDMFYTP-SG 306 (357)
T ss_dssp EEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TC
T ss_pred EEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHHHHHHHhCCc-ceEEEEEEEeC-CC
Confidence 9998754333222222 2234333 3334445556776 99999999999999999999996 99999999997 88
Q ss_pred cEEEEEeCCCCCCc--h--HHHHHHhCCCHHHHHHHH
Q 001014 380 EVMVIEMNPRVSRS--S--ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 380 ~~~viEiNpR~~gs--~--~l~~~atG~~l~~~~~~~ 412 (1190)
++||+|||||++-+ + +...+++|+++.+++.++
T Consensus 307 ~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 343 (357)
T 4fu0_A 307 EIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKL 343 (357)
T ss_dssp CEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHH
Confidence 99999999776543 3 456778999988776554
No 64
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=2.6e-34 Score=343.16 Aligned_cols=376 Identities=18% Similarity=0.183 Sum_probs=279.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-CeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-YETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
.+.||||||+|.. ...+++++++.+ +..+ +...||.... .+......+.+.+.++++++++++
T Consensus 20 ~~m~ilvlG~ggr-----------e~ala~~l~~s~~v~~v~~~pgn~g~~~----~~~~~~i~~~d~~~l~~~a~~~~i 84 (442)
T 3lp8_A 20 GSMNVLVIGSGGR-----------EHSMLHHIRKSTLLNKLFIAPGREGMSG----LADIIDIDINSTIEVIQVCKKEKI 84 (442)
T ss_dssp CCEEEEEEECSHH-----------HHHHHHHHTTCTTEEEEEEEECCGGGTT----TSEECCCCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCChH-----------HHHHHHHHHhCCCCCEEEEECCChHHhh----ccceeecCcCCHHHHHHHHHHhCC
Confidence 3468999999973 334577887764 4444 4433443221 122233466789999999999999
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADAL 799 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~ 799 (1190)
|+|++..+......+++.++ +.| ++++||+++++.++.||..++++|+++|||+|++..+++.+++.
T Consensus 85 d~vv~g~E~~l~~~~~~~l~----------~~G---i~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~ 151 (442)
T 3lp8_A 85 ELVVIGPETPLMNGLSDALT----------EEG---ILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAY 151 (442)
T ss_dssp CEEEECSHHHHHTTHHHHHH----------HTT---CEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHH
T ss_pred CEEEECCcHHHHHHHHHHHH----------hcC---CcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHH
Confidence 99997544333336778888 899 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh--C--CCCcEEEEEecCCcceEEEeEEecCCCcEEEEe
Q 001014 800 AIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV--D--PERPVLIDKYLSDAIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 800 ~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~--~--~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~ 875 (1190)
+++++++||+||||..+.||+||.+++|.+|+.++++.+... + ...+++||||| .|.|++|.+++|++ .++.++
T Consensus 152 ~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i-~G~E~sv~~~~dg~-~~~~~~ 229 (442)
T 3lp8_A 152 KFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFL-EGKEISFFTLVDGS-NPVILG 229 (442)
T ss_dssp HHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECC-CSEEEEEEEEEESS-CEEEEE
T ss_pred HHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEee-cCcEEEEEEEECCC-eEEEeE
Confidence 999999999999999999999999999999999999987632 1 12579999999 69999999999864 565555
Q ss_pred eeeeeec-----ccccccccccccCCCCCCHHHHHHHHHH----HHHHHHHcCC--CcceeEEEEEecCCCEEEEEEccC
Q 001014 876 IMEHIEQ-----AGVHSGDSACMIPTKTISSSCLDTISSW----TIKLAKRLNV--CGLMNCQYAITTSGDVYLLEANPR 944 (1190)
Q Consensus 876 i~e~~~~-----~g~~~gd~~~~~p~~~l~~~~~~~i~~~----a~~i~~~Lg~--~G~~~ief~~d~~g~~~viEiNpR 944 (1190)
..+.... .|.++|......|++.++++..+++.+. +.++++++|+ +|++++||+++.+| +||||+|||
T Consensus 230 ~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g-~~viEiN~R 308 (442)
T 3lp8_A 230 VAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE-PKLLEYNVR 308 (442)
T ss_dssp EEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESS
T ss_pred EeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eEEEEEecC
Confidence 5443322 2566777777778877999999999987 8888888887 79999999996555 999999999
Q ss_pred CCCC-hhhhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCe---eEEeeccCCCccc--------------CCCcee-
Q 001014 945 ASRT-VPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH---VSVKEAVLPFEKF--------------QGCDVL- 1005 (1190)
Q Consensus 945 ~~~s-~~~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~---~~vk~~~~~~~~~--------------~~~~~~- 1005 (1190)
+++. ...+...+|.|+.+++++++.|.. +++.+. ..... +.+-..-+|...- +++...
T Consensus 309 ~g~~~~~~~~~~~~~dl~~~~~~~~~G~l-~~~~~~--~~~~~a~~vv~a~~gyp~~~~~g~~i~g~~~~~~~~~~~~~~ 385 (442)
T 3lp8_A 309 FGDPETQSILPRLNSDFLKLLSLTAKGKL-GNESVE--LSKKAALCVVVASRGYPGEYKKNSIINGIENIEKLPNVQLLH 385 (442)
T ss_dssp CCTTHHHHHGGGBCSCHHHHHHHHHHTCC-SSCCCC--BCSCEEEEEEEEETTTTSSCCSSCEEBSHHHHHTCSSEEEEE
T ss_pred CCCCchhhhHHHhCCCHHHHHHHHHcCCC-CCCCce--eccCcEEEEEEccCCCCCCCCCCCEeeCCcccccCCCcEEEE
Confidence 9985 455566789999999999999963 222211 11111 1111112222111 122111
Q ss_pred eCCc-----cc----ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCCh
Q 001014 1006 LGPE-----MR----STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK 1053 (1190)
Q Consensus 1006 lg~~-----~r----s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~ 1053 (1190)
.|+. .. .++.|++.|+|+++|..+|+.+... +-..| .+++.+++.+
T Consensus 386 ag~~~~~~~~~~~ggRv~~v~~~g~~~~~A~~~a~~~~~~-i~~~~-~~~r~dig~~ 440 (442)
T 3lp8_A 386 AGTRREGNNWVSDSGRVINVVAQGENLASAKHQAYAALDL-LDWPD-GIYRYDIGSC 440 (442)
T ss_dssp SSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTT-CBCTT-EECCSCTTCC
T ss_pred eeeeccCCeEEecCCeEEEEEEecCCHHHHHHHHHHHhcc-cCCCC-CcccCccCcc
Confidence 1321 11 2357889999999999999999875 34556 7778887654
No 65
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=352.72 Aligned_cols=374 Identities=16% Similarity=0.172 Sum_probs=270.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHH-HHCCCeEEEEccCCCCCCCCccCcce--EEECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKAL-KEEGYEVILINSNPATIMTDPGLADR--TYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~--~~i~p~~~~~v~~i~~~~~~ 168 (1190)
.+||||+|+|.. | ..+++.+ +++|++++++++++.... ..++. ..+.+.+.+.+.++++++++
T Consensus 24 ~~~IlIlG~g~r------~-----~al~~~~a~~~g~~~v~~~~~~~~~~---~~~~~~~~~~~~~d~~~l~~~~~~~~~ 89 (452)
T 2qk4_A 24 AARVLIIGSGGR------E-----HTLAWKLAQSHHVKQVLVAPGNAGTA---CSEKISNTAISISDHTALAQFCKEKKI 89 (452)
T ss_dssp SEEEEEEECSHH------H-----HHHHHHHTTCTTEEEEEEEECCGGGS---BSSSEEECCCCSSCHHHHHHHHHHHTC
T ss_pred CcEEEEECCCHH------H-----HHHHHHHHhcCCCCEEEEECCChhhh---hhccccccccCCCCHHHHHHHHHHcCC
Confidence 469999999942 2 1344554 567999887776544332 23332 23566788999999999999
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcC
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIG 248 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig 248 (1190)
|+|+++.+. .+.. .+ ...++..|++++|++++++++++||..++++|+++|||+|++..+++.+++.+++++++
T Consensus 90 d~V~~~~E~--~~~~--~~--~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g 163 (452)
T 2qk4_A 90 EFVVVGPEA--PLAA--GI--VGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSAD 163 (452)
T ss_dssp CEEEECSSH--HHHT--TH--HHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCS
T ss_pred CEEEECCcH--HHHH--HH--HHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCC
Confidence 999997652 2111 11 23577889999999999999999999999999999999999999999999999999999
Q ss_pred CCc-EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCc-EEEEEeeee
Q 001014 249 EFP-LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADN-VVIICSIEN 322 (1190)
Q Consensus 249 ~~P-vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~-~~~~~~~e~ 322 (1190)
|| +||||..++||+|+.++++.+|+.++++.+.... ...+++|||||+| +|+++.+++| |+ ++.++..++
T Consensus 164 -~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~~~~~~~~~~~ 239 (452)
T 2qk4_A 164 -FPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG-EEVSCLCFTD--GKTVAPMPPAQD 239 (452)
T ss_dssp -SCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-EEEEEEEEEC--SSCEEECCCBEE
T ss_pred -CCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CeEEEEEEEC--CCEEEEcceeee
Confidence 99 9999999999999999999999999998876421 1368999999999 9999999984 44 444443332
Q ss_pred e----C-CCCcccccEEEEecCCCCCHHHHHHHH-HHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCC
Q 001014 323 V----D-PMGVHTGDSITVAPAQTLTDKEYQRLR-DYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 323 ~----~-~~g~~~g~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~ 391 (1190)
. + ..++++|.+..+.|++.++++..++++ +.+.+++++| ++. |++++||++++ +| +||+|||||++
T Consensus 240 ~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~-G~~~ve~~~~~-~g-~~viEiN~R~~ 316 (452)
T 2qk4_A 240 HKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYT-GILYAGIMLTK-NG-PKVLEFNCRFG 316 (452)
T ss_dssp EEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCC-EEEEEEEEEET-TE-EEEEEEESSCC
T ss_pred cccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCce-eEEEEEEEEeC-CC-cEEEEEeccCC
Confidence 2 1 125667777888998778999888886 6788888776 564 99999999996 66 99999999999
Q ss_pred CchHH-HHHHhCCCHHHHHHHHHcCCCCCCCCcccc-CC-CCcccc--------CCcCeEEe-----eeceeeecccCCC
Q 001014 392 RSSAL-ASKATGFPIAKMAAKLSVGYSLDQIPNDIT-KK-TPASFE--------PSIDYVVT-----KIPRFAFEKFPGS 455 (1190)
Q Consensus 392 gs~~l-~~~atG~~l~~~~~~~alG~~l~~~~~~i~-~~-~~~~f~--------p~~~~v~~-----k~p~~~~~~~~~~ 455 (1190)
++... ...++|+|+.+.+++++.|. +++...... +. ....+. |..+..+. ..|.+.+.. .|.
T Consensus 317 ~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~a~~~~l~~~g~~~~~~~g~~i~~l~~~~~~~v~~~~-~G~ 394 (452)
T 2qk4_A 317 DPECQVILPLLKSDLYEVIQSTLDGL-LCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEAQALGLEVFH-AGT 394 (452)
T ss_dssp TTTHHHHGGGBCSCHHHHHHHHHTTC-GGGGCCCBCTTCEEEEEEEECTTTTSSCCCSCBCBCHHHHHHTTCEEEE-SSE
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccceecCCCcEEEEEEECCCCCCCCCCCCcccCccccCCCCcEEEE-CcE
Confidence 87543 56678999999999988875 543321111 11 101111 11111110 113222211 121
Q ss_pred C---cccCCCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 456 E---PLLTTQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 456 ~---~~l~~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
. ..+.+...++|+|++.|.|+++|++++.++++ +.+.|.
T Consensus 395 ~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~~g~ 437 (452)
T 2qk4_A 395 ALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGA 437 (452)
T ss_dssp EEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBCTTC
T ss_pred EeeCCeEEecCCeEEEEEEecCCHHHHHHHHHHHHhhcccCCc
Confidence 1 22455667899999999999999999999996 666664
No 66
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=100.00 E-value=5.9e-35 Score=351.43 Aligned_cols=377 Identities=14% Similarity=0.172 Sum_probs=274.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHH-HHhCCCeEEEecCCCCCcCccccCCc--ceeecCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFS-LQSAGYETIMMNSNPETVSTDYDTSD--RLYFEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~a-l~~~G~~vi~v~~~p~~~s~~~~~ad--~~~~~p~~~e~v~~i~~~~ 717 (1190)
+..+||||+|+|+. ....++. ++++|++++++++++.... . .++ ....++.+.+.++++++++
T Consensus 22 ~m~~~IlIlG~g~r-----------~~al~~~~a~~~g~~~v~~~~~~~~~~-~--~~~~~~~~~~~~d~~~l~~~~~~~ 87 (452)
T 2qk4_A 22 SMAARVLIIGSGGR-----------EHTLAWKLAQSHHVKQVLVAPGNAGTA-C--SEKISNTAISISDHTALAQFCKEK 87 (452)
T ss_dssp CCSEEEEEEECSHH-----------HHHHHHHHTTCTTEEEEEEEECCGGGS-B--SSSEEECCCCSSCHHHHHHHHHHH
T ss_pred ccCcEEEEECCCHH-----------HHHHHHHHHhcCCCCEEEEECCChhhh-h--hccccccccCCCCHHHHHHHHHHc
Confidence 33579999999963 1222444 4678999777765433222 1 222 2334667899999999999
Q ss_pred CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHH
Q 001014 718 RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEAD 797 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e 797 (1190)
++|+|++..+......+++.++ +.| ++++||+++++.++.||..++++|+++|||+|++..+.+.++
T Consensus 88 ~~d~V~~~~E~~~~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~ 154 (452)
T 2qk4_A 88 KIEFVVVGPEAPLAAGIVGNLR----------SAG---VQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEE 154 (452)
T ss_dssp TCCEEEECSSHHHHTTHHHHHH----------HTT---CCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHH----------hcC---CcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH
Confidence 9999998655433446777777 889 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCc-EEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh--C--CCCcEEEEEecCCcceEEEeEEecCCCcEE
Q 001014 798 ALAIAKEIGYP-VVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV--D--PERPVLIDKYLSDAIEIDVDALADSCGNVV 872 (1190)
Q Consensus 798 ~~~~~~~igyP-vvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~--~--~~~~vliEefI~~g~E~~v~v~~d~~G~v~ 872 (1190)
+.++++++||| +||||..++||+|+.+++|.+|+.++++.+... + ...+++||+|| .|.|++|.+++|++ .++
T Consensus 155 ~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i-~G~E~sv~~~~dG~-~~~ 232 (452)
T 2qk4_A 155 ACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELL-DGEEVSCLCFTDGK-TVA 232 (452)
T ss_dssp HHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECC-CSEEEEEEEEECSS-CEE
T ss_pred HHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECC-CCCeEEEEEEECCC-EEE
Confidence 99999999999 999999999999999999999999999876432 1 13689999999 59999999999643 355
Q ss_pred EEeeeeeeec-----ccccccccccccCCCCCCHHHHHHHH-HHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEE
Q 001014 873 IGGIMEHIEQ-----AGVHSGDSACMIPTKTISSSCLDTIS-SWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEA 941 (1190)
Q Consensus 873 ~~~i~e~~~~-----~g~~~gd~~~~~p~~~l~~~~~~~i~-~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEi 941 (1190)
.++..++... .+.+.|......|++.+++++.+++. +++.+++++| +++|++++||+++.+| +||+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEi 311 (452)
T 2qk4_A 233 PMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG-PKVLEF 311 (452)
T ss_dssp ECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTE-EEEEEE
T ss_pred EcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEE
Confidence 5555543322 13445555555677668999888886 6888888775 6789999999997666 999999
Q ss_pred ccCCCCChhh-hhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCe-e-EEee-------------ccCCCc--ccCCCc
Q 001014 942 NPRASRTVPF-VSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH-V-SVKE-------------AVLPFE--KFQGCD 1003 (1190)
Q Consensus 942 NpR~~~s~~~-~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~-~-~vk~-------------~~~~~~--~~~~~~ 1003 (1190)
|||++++.+. +...+|+|+.+++++++.|. +++.... ....+ . .+-. .+..+. ..+++.
T Consensus 312 N~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~--~~~~~~a~~~~l~~~g~~~~~~~g~~i~~l~~~~~~~v~ 388 (452)
T 2qk4_A 312 NCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCTSLPV--WLENHTALTVVMASKGYPGDYTKGVEITGFPEAQALGLE 388 (452)
T ss_dssp ESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGGGCCC--BCTTCEEEEEEEECTTTTSSCCCSCBCBCHHHHHHTTCE
T ss_pred eccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccce--ecCCCcEEEEEEECCCCCCCCCCCCcccCccccCCCCcE
Confidence 9999997553 56778999999999998886 5543221 11111 1 1111 011111 114544
Q ss_pred eee-CCc---------ccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCC
Q 001014 1004 VLL-GPE---------MRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLT 1052 (1190)
Q Consensus 1004 ~~l-g~~---------~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~ 1052 (1190)
.+. |+. ...+|+|++.|+|.++|..++.++... +...| ++++.+++.
T Consensus 389 ~~~~G~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~-i~~~g-~~~r~di~~ 445 (452)
T 2qk4_A 389 VFHAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAA-IKFEG-AIYRKDIGF 445 (452)
T ss_dssp EEESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHH-CBCTT-CBCCSCTTH
T ss_pred EEECcEEeeCCeEEecCCeEEEEEEecCCHHHHHHHHHHHHhh-cccCC-cEEchhcch
Confidence 433 432 234689999999999999999988653 23345 677777764
No 67
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=1.8e-35 Score=346.18 Aligned_cols=341 Identities=16% Similarity=0.164 Sum_probs=229.2
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
++||+|+|+|+. +.+++++++++|++++++++++..+.. ..+|+.+..+ .+.+++ +++|+|
T Consensus 1 M~~Ililg~g~~-----------~~~~~~a~~~~G~~v~~~~~~~~~~~~--~~~~~~~~~~----~l~~~~--~~~d~v 61 (365)
T 2z04_A 1 MLTVGILGGGQL-----------GWMTILEGRKLGFKFHVLEDKENAPAC--RVADRCFRTG----QISEFV--DSCDII 61 (365)
T ss_dssp -CEEEEECCSHH-----------HHHHHHHHGGGTCEEEEECSSSSCHHH--HHSSEEECGG----GHHHHH--HHCSEE
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCCCCchh--hhccceeeHH----HHHHHh--hcCCEE
Confidence 378999999853 667799999999999999988765432 3567666555 677777 679999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
++.++.... .+++.++ - ++||+++++.++.||..++++|+++|||+|++..++ .+++.+++
T Consensus 62 ~~~~e~~~~-~~~~~l~----------------~-~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~ 122 (365)
T 2z04_A 62 TYEFEHIKD-EVLEKCE----------------S-KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDAL 122 (365)
T ss_dssp EESSSCCCH-HHHHHHT----------------T-TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC----------
T ss_pred EECCCCCcH-HHHHHHh----------------h-hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHH
Confidence 987765433 3444444 2 678999999999999999999999999999999988 88998888
Q ss_pred HHhCCcEEEecCcCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeee
Q 001014 803 KEIGYPVVVRPSYVL-GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIE 881 (1190)
Q Consensus 803 ~~igyPvvvKP~~~~-gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~ 881 (1190)
++++||+|+||..++ +|+|+.+++|.+|+.++++.+. ...+++||+||+.|.|++|.+++|++|++..+++.+...
T Consensus 123 ~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~---~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~~~~ 199 (365)
T 2z04_A 123 KSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHD---KEESFIIEEFVKFEAEISCIGVRDREGKTYFYPQPFNKH 199 (365)
T ss_dssp -----CEEEECC---------------------------------CEEEECCCCSEEEEEEEEECTTCCEEECCEEEEEE
T ss_pred HhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhc---cCCCEEEEccCCCCEEEEEEEEECCCCCEEEECCEEEEE
Confidence 899999999999999 9999999999999999887654 246899999995599999999999888988888887765
Q ss_pred cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHH
Q 001014 882 QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLA 961 (1190)
Q Consensus 882 ~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~ 961 (1190)
..+. ++. ...|.+ + .+++.+++.+++++||++|++++||+++++|++|++|+|||++++.+.+..++|.|++
T Consensus 200 ~~~~--~~~-~~~p~~-~----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~~~~~~~~ 271 (365)
T 2z04_A 200 EEGI--LIY-NYVPYA-K----LKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTSQF 271 (365)
T ss_dssp ETTE--EEE-EEEEEE-C----CHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSCHH
T ss_pred eCCE--eEE-EECCHh-H----HHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEeeccccCHH
Confidence 4332 111 223432 3 4778999999999999999999999997788899999999999876656778999999
Q ss_pred HHHHHHHcCCCCCCCCCCccccCCeeEEeec---cCC-----CcccCCCceee-CC---cccccceeeeeeCCHHHHHHH
Q 001014 962 KYAALVMSGKSLNDLGFTKEVIPKHVSVKEA---VLP-----FEKFQGCDVLL-GP---EMRSTGEVMGIDMSFPIAFAK 1029 (1190)
Q Consensus 962 ~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~~---~~~-----~~~~~~~~~~l-g~---~~rs~G~v~~~g~~~~eA~~k 1029 (1190)
+.++++++|.++++..... ....+... -.| +...++++.++ |+ ..+.+|+|++.|+|.++|..+
T Consensus 272 ~~~~~~~~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lg~v~~~g~~~~~a~~~ 347 (365)
T 2z04_A 272 ENLLRAITEMPLGSTELKL----PSGMVNILGKSYEEIPLKEILSVEGAKLYWYGKEKKPRRKVGHVNVVGRSKEEVVEK 347 (365)
T ss_dssp HHHHHHHTTCCCCCCCBSS----CEEEEEEESCCGGGSCHHHHTTSTTEEEEECCCCCCTTCEEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHhCCCCCCccccC----CEEEEEEECCccccchHHHHhcCCCCEEEecCCCCCCCCeEEEEEEecCCHHHHHHH
Confidence 9999999999998653211 11111100 000 11234543333 54 457789999999999999999
Q ss_pred HHHHcCC
Q 001014 1030 AQIAAGQ 1036 (1190)
Q Consensus 1030 a~~~~~~ 1036 (1190)
+..+...
T Consensus 348 ~~~~~~~ 354 (365)
T 2z04_A 348 VERVFTL 354 (365)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9887643
No 68
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=100.00 E-value=2.6e-34 Score=343.28 Aligned_cols=371 Identities=16% Similarity=0.178 Sum_probs=274.4
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHH-HHhCCCeEEEecC-CCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFS-LQSAGYETIMMNS-NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~a-l~~~G~~vi~v~~-~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
||||||+|.. ....+.+ ++++|++++++++ |+... ..++.+..++.+.+.++++++++++|+|
T Consensus 2 ~ililG~g~r-----------~~~~a~~~~~~~g~~~v~~~~~~~~~~----~~~~~~~~~~~d~~~l~~~~~~~~~d~v 66 (424)
T 2yw2_A 2 KVLVVGNGGR-----------EHAIAWKVAQSPLVKELYVAKGNAGIW----EIAKRVDISPTDVEKLAEFAKNEGVDFT 66 (424)
T ss_dssp EEEEEESSHH-----------HHHHHHHHTTCTTCSEEEEEECCTTGG----GTSEEECSCTTCHHHHHHHHHHHTCSEE
T ss_pred EEEEECCCHH-----------HHHHHHHHhhCCCCCEEEEECCCcchh----hhcccccCCcCCHHHHHHHHHHcCCCEE
Confidence 7999999952 1122333 3678999887764 33321 2344444567789999999999999999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
++.++......++..++ +.| ++++||+++++.++.||..++++|+++|||+|++..+.+.+++.+++
T Consensus 67 ~~~~E~~~~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~ 133 (424)
T 2yw2_A 67 IVGPEAPLVEGIVDEFE----------KRG---LKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYV 133 (424)
T ss_dssp EECSHHHHHTTHHHHHH----------HTT---CCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHH
T ss_pred EECCchHHHHHHHHHHH----------HCC---CcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHH
Confidence 98654322235677777 889 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee
Q 001014 803 KEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME 878 (1190)
Q Consensus 803 ~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e 878 (1190)
++++||+||||..++||+||.+++|.+|+.++++.+.... ...+++||+|| .|.|++|.+++|++ .++.+...+
T Consensus 134 ~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i-~g~E~sv~~~~~G~-~~~~~~~~~ 211 (424)
T 2yw2_A 134 EKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFL-EGEEASYIVMINGD-RYVPLPTSQ 211 (424)
T ss_dssp HHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECC-CSEEEEEEEEEETT-EEEECCCBE
T ss_pred HHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECC-CCcEEEEEEEEcCC-EEEeeccee
Confidence 9999999999999999999999999999999998865421 13589999999 59999999999743 333334333
Q ss_pred eee-----cccccccccccccCCCCCCHHHHHHHH-HHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 879 HIE-----QAGVHSGDSACMIPTKTISSSCLDTIS-SWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 879 ~~~-----~~g~~~gd~~~~~p~~~l~~~~~~~i~-~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
+.. ..+.++|+.....|++.+++++.+++. +++.+++++| +++|++++||+++.+| +||||+|||+++
T Consensus 212 ~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~ 290 (424)
T 2yw2_A 212 DHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG-PKVLEFNVRLGD 290 (424)
T ss_dssp ECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE-EEEEEEESSCCT
T ss_pred eccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecCCCC
Confidence 221 124556666666677668999998884 7888888776 7889999999997666 999999999998
Q ss_pred Chh-hhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCee-EEee-----c--------cCCCcc---cCCCce-eeCC
Q 001014 948 TVP-FVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHV-SVKE-----A--------VLPFEK---FQGCDV-LLGP 1008 (1190)
Q Consensus 948 s~~-~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~-~vk~-----~--------~~~~~~---~~~~~~-~lg~ 1008 (1190)
+.+ .+...+|+|+.+++++++.|. ++++... ..+. .+-. + +..+.. .+++.. +.|+
T Consensus 291 ~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~----~~~a~~~~~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~~g~ 365 (424)
T 2yw2_A 291 PEAQPILMRVKNDFLETLLNFYEGK-DVHIKED----ERYALDVVLASRGYPEKPETGKIIHGLDYLKSMEDVVVFHAGT 365 (424)
T ss_dssp TTHHHHHHTBCSCHHHHHHHHHTTC-CCCCCBC----SSEEEEEEEECTTTTSSCCCCCBCBCHHHHHTSTTEEEEESSE
T ss_pred cHHHHHHHHhCCCHHHHHHHHHcCC-CCccccc----CCcEEEEEEecCCCCCCCCCCCcCcCcccccCCCCeEEEEcce
Confidence 754 356689999999999999886 5543221 1111 1110 0 000111 234333 2253
Q ss_pred c---------ccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCCh
Q 001014 1009 E---------MRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK 1053 (1190)
Q Consensus 1009 ~---------~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~ 1053 (1190)
. ...+|+|++.|+|.++|..++.++... +...| ++++.+++.+
T Consensus 366 ~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~-i~~~g-~~~r~di~~~ 417 (424)
T 2yw2_A 366 KKEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRY-VCFEG-MHYRKDIGDK 417 (424)
T ss_dssp EEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTT-CBCTT-CBCCSCTTTT
T ss_pred EeeCCEEEecCCcEEEEEEEeCCHHHHHHHHHHHHhc-ceeCC-cEEcchhhhH
Confidence 2 244679999999999999999998764 33455 6678777654
No 69
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=5.1e-35 Score=381.43 Aligned_cols=367 Identities=17% Similarity=0.262 Sum_probs=237.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCC---------------c
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPL---------------T 706 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~---------------~ 706 (1190)
..+||||-+.|.+ ++.++++++++|+++++++++++..+.....+|+.|..+. +
T Consensus 13 ~~~~~lianrGei-----------a~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld 81 (1165)
T 2qf7_A 13 PISKILVANRSEI-----------AIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLS 81 (1165)
T ss_dssp CCCEEEECCCHHH-----------HHHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHC
T ss_pred cceEEEEcCCcHH-----------HHHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccC
Confidence 4589999998885 7888999999999999999998877766668888876542 3
Q ss_pred HHHHHHHhhhcCCCccccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 707 VEDVLNVIDLERPEGIIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 707 ~e~v~~i~~~~~~d~Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
.+.++++++++++|+|++.+|.. ....++..++ +.| ++++||+++++.++.||..++++|+++|||
T Consensus 82 ~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le----------~~G---i~~iGp~~~ai~~~~DK~~~k~~l~~~GIP 148 (1165)
T 2qf7_A 82 IDEVIRVAKLSGADAIHPGYGLLSESPEFVDACN----------KAG---IIFIGPKADTMRQLGNKVAARNLAISVGVP 148 (1165)
T ss_dssp HHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHH----------HTT---CEESSCCHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHH----------HcC---CceECCCHHHHHHHCCHHHHHHHHHHcCCC
Confidence 78999999999999999988754 3346777888 899 999999999999999999999999999999
Q ss_pred CCCce--eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh----CCCCcEEEEEecCCcceE
Q 001014 786 QPKGG--IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV----DPERPVLIDKYLSDAIEI 859 (1190)
Q Consensus 786 ~p~~~--~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~----~~~~~vliEefI~~g~E~ 859 (1190)
+|++. .+.+.+++.++++++|||+||||+.++||+||.+|+|.+|+.++++.+... +++.+++||+||++++|+
T Consensus 149 vp~~~~~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~Ei 228 (1165)
T 2qf7_A 149 VVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHV 228 (1165)
T ss_dssp BC---------------------------------------------------------------------CCCSSEEEE
T ss_pred CCCeeCcCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEE
Confidence 99998 788999999999999999999999999999999999999999998875432 245689999999778999
Q ss_pred EEeEEecCCCcEEEEeee-eeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe-cCCCEE
Q 001014 860 DVDALADSCGNVVIGGIM-EHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT-TSGDVY 937 (1190)
Q Consensus 860 ~v~v~~d~~G~v~~~~i~-e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d-~~g~~~ 937 (1190)
+|++++|++|+++..... ..+... .+......|++.++++..+++.+.+.++++++||+|++++||+++ .+|++|
T Consensus 229 sV~vl~D~~G~vv~l~~r~~s~~r~---~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~ 305 (1165)
T 2qf7_A 229 ESQILGDTHGNVVHLFERDCSVQRR---NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFY 305 (1165)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEET---TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEE
T ss_pred EEEEEEcCCCcEEEEEeecccceec---ccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEE
Confidence 999999988887644321 122211 112233447768999999999999999999999999999999997 678999
Q ss_pred EEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCCCC--CC-Cc-cccCCeeEEeeccC---C---Cc-------cc-
Q 001014 938 LLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL--GF-TK-EVIPKHVSVKEAVL---P---FE-------KF- 999 (1190)
Q Consensus 938 viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~~~--~~-~~-~~~~~~~~vk~~~~---~---~~-------~~- 999 (1190)
|||||||++++++++..++|+|++++++++++|.++++. ++ .+ ......+++.+.+. | |. .+
T Consensus 306 ~iEiNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~ 385 (1165)
T 2qf7_A 306 FIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYR 385 (1165)
T ss_dssp EEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEE
T ss_pred EEEEEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecCCccCcCCCCcEEEEEe
Confidence 999999999999988899999999999999999998754 22 11 12233444443331 1 00 00
Q ss_pred -C-CCceee--CC-----c-----ccccceeeeeeCCHHHHHHHHHHHcC
Q 001014 1000 -Q-GCDVLL--GP-----E-----MRSTGEVMGIDMSFPIAFAKAQIAAG 1035 (1190)
Q Consensus 1000 -~-~~~~~l--g~-----~-----~rs~G~v~~~g~~~~eA~~ka~~~~~ 1035 (1190)
+ +.+..+ |. . .+..|.|++.|+|.++|..++.++..
T Consensus 386 ~~~~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~ 435 (1165)
T 2qf7_A 386 SASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALR 435 (1165)
T ss_dssp CCCCTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhh
Confidence 1 111121 11 1 12367899999999999999988754
No 70
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=100.00 E-value=5.2e-34 Score=340.40 Aligned_cols=373 Identities=16% Similarity=0.176 Sum_probs=270.2
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHH-HHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKAL-KEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+||||+|+|. +| ..+++++ +++|++++++++.... . ...++.....+.+.+.+.++++++++|+|
T Consensus 1 m~ililG~g~------r~-----~~~a~~~~~~~g~~~v~~~~~~~~-~--~~~~~~~~~~~~d~~~l~~~~~~~~~d~v 66 (422)
T 2xcl_A 1 MNVLIIGKGG------RE-----HTLAWKAAQSSLVENVFAAPGNDG-M--AASAQLVNIEESDHAGLVSFAKQNQVGLT 66 (422)
T ss_dssp CEEEEEECSH------HH-----HHHHHHHTTCTTCSEEEEEECCGG-G--TTTCEECCCCTTCHHHHHHHHHHTTEEEE
T ss_pred CEEEEECCCH------HH-----HHHHHHHHhCCCCCEEEEeCCChh-h--hhhccccccCcCCHHHHHHHHHHcCCCEE
Confidence 3899999993 22 2445555 4579999888764221 1 23455333566789999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP 251 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P 251 (1190)
+++.+ ..+. ..+ ...++..|++++||++++++++.||..++++|+++|||+|++..+++.+++.+++++++ ||
T Consensus 67 ~~~~E--~~~~--~~~--~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~-~P 139 (422)
T 2xcl_A 67 IVGPE--VPLI--EGL--VDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKG-AP 139 (422)
T ss_dssp EECSH--HHHH--TTH--HHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC-SS
T ss_pred EECCc--HHHH--HHH--HHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcC-CC
Confidence 98654 2211 111 34577899999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcC----CCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE-EeeeeeC--
Q 001014 252 LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAAS----LTSQVLVEKSLLGWKEYELEVMRDLADNVVII-CSIENVD-- 324 (1190)
Q Consensus 252 vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~-~~~e~~~-- 324 (1190)
+||||..+++|+|+.++++.+|+.++++.+.... ....++|||||+| +|+++.+++| |+.+.. ...+...
T Consensus 140 ~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~d--G~~~~~~~~~~~~~~~ 216 (422)
T 2xcl_A 140 IVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFSLMAFVK--GEKVYPMVIAQDHKRA 216 (422)
T ss_dssp EEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE--TTEEEECCCBEEEEEE
T ss_pred EEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEEEEEEEc--CCEEEecceeeeeehh
Confidence 9999999999999999999999999998876521 1358999999999 9999999986 343332 2222211
Q ss_pred ---CCCcccccEEEEecCCCCCHHHHHHHH-HHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEEeCCCCCCchH
Q 001014 325 ---PMGVHTGDSITVAPAQTLTDKEYQRLR-DYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA 395 (1190)
Q Consensus 325 ---~~g~~~g~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~ 395 (1190)
..++++|.+....|++.++++..++++ +.+.+++++| ++. |++++||++++ +| +||+|+|||++++.+
T Consensus 217 ~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~-G~~~vd~~~~~-~g-~~viEiN~R~g~~~~ 293 (422)
T 2xcl_A 217 FDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFT-GVLYAGLMLTE-NG-SKVIEFNARFGDPET 293 (422)
T ss_dssp EGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCE-EEEEEEEEEET-TE-EEEEEEESSCCTTTH
T ss_pred cCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcE-EEEEeeEEEeC-CC-cEEEEEecCCCCcHH
Confidence 124567777788998778999888885 4777777776 664 99999999996 56 999999999998754
Q ss_pred -HHHHHhCCCHHHHHHHHHcCCCCCCCCccccCCCCccc----cC---CcCeEE--e-ee-ceeeecccCCC---CcccC
Q 001014 396 -LASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPASF----EP---SIDYVV--T-KI-PRFAFEKFPGS---EPLLT 460 (1190)
Q Consensus 396 -l~~~atG~~l~~~~~~~alG~~l~~~~~~i~~~~~~~f----~p---~~~~v~--~-k~-p~~~~~~~~~~---~~~l~ 460 (1190)
....++|+|+.+.+++++.|. ++++...-.......+ .| ..+..+ + .+ |.+.+..+ +. ...+.
T Consensus 294 ~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~-g~~~~~~~~~ 371 (422)
T 2xcl_A 294 QVVLPRMESDLVQVLLDLLDDK-EVDLRWKDTAAVSVVLASEGYPESYAKGTPIGSLAAETEQVVVFHA-GTKAEGGEFV 371 (422)
T ss_dssp HHHGGGBCSCHHHHHHHHHTTC-CCCCCBCSCEEEEEEEEETTTTSCCCSCCBCCCCCCCSSSEEEEES-SEEECSSSEE
T ss_pred HHHHHhcCCCHHHHHHHHHcCC-cCcccccCCceEEEEEECCCCCCCCCCCCcccCcccCCCCcEEEEe-eeEeeCCEEE
Confidence 345689999999999988875 3333111000000000 01 000000 0 00 33332111 21 12344
Q ss_pred CCCCcEEEEEEEeCCHHHHHHHHHHhhh-cCccCC
Q 001014 461 TQMKSVGEAMALGRTFQESFQKALRSLE-CGFSGW 494 (1190)
Q Consensus 461 ~~~~s~G~v~a~G~~~~ea~~ka~~~l~-~~~~g~ 494 (1190)
+...++|+|++.|+|.+||++++.++++ +.+.|.
T Consensus 372 ~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~ 406 (422)
T 2xcl_A 372 TNGGRVANVTAFDETFEAARDRVYKAVDEIFKPGL 406 (422)
T ss_dssp ECSSEEEEEEEEESSHHHHHHHHHHHHHHHCCTTE
T ss_pred eCCCceEEEEEEeCCHHHHHHHHHHHHhcceeCCc
Confidence 5567799999999999999999999986 666554
No 71
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=100.00 E-value=2.8e-34 Score=329.22 Aligned_cols=286 Identities=20% Similarity=0.276 Sum_probs=232.2
Q ss_pred CCCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcC
Q 001014 91 DLRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKER 167 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~ 167 (1190)
+++||+||.||. +.|||+ ||.+++++|++.||+|++++.+.... ..++..+
T Consensus 12 ~~~~v~vl~gg~-----s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~---------------------~~l~~~~ 65 (317)
T 4eg0_A 12 RFGKVAVLFGGE-----SAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPL---------------------SALKDEG 65 (317)
T ss_dssp GGCEEEEECCCS-----STTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCT---------------------THHHHTT
T ss_pred hcceEEEEECCC-----CCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchH---------------------HHhhhcC
Confidence 346999999984 899996 79999999999999999998443210 1234578
Q ss_pred CCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH---
Q 001014 168 PDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIA--- 244 (1190)
Q Consensus 168 ~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~--- 244 (1190)
+|+|++..+|..+++..+ +++++.+|++++|++++++.++.||..++++|+++|||+|++..+++.+++.+++
T Consensus 66 ~D~v~~~~hg~~ge~~~~----~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~ 141 (317)
T 4eg0_A 66 FVRAFNALHGGYGENGQI----QGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDI 141 (317)
T ss_dssp CCEEEECCCSGGGTSSHH----HHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHH
T ss_pred CCEEEEcCCCCCCchHHH----HHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHH
Confidence 999999999999988877 7899999999999999999999999999999999999999999999888777776
Q ss_pred -HHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-CCeeeeEEEEEeCCCcEEEEEeeee
Q 001014 245 -NEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-GWKEYELEVMRDLADNVVIICSIEN 322 (1190)
Q Consensus 245 -~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-G~~E~sv~v~~d~~g~~~~~~~~e~ 322 (1190)
++++ ||+||||..+++|.|+.++++.+|+.++++.+... ...++||+||+ | +|+++.++.+..+.++.+.....
T Consensus 142 ~~~~g-~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~i~~G-~E~~v~vl~~~~~~~~~i~~~~~ 217 (317)
T 4eg0_A 142 VAKLG-LPLFVKPASEGSSVAVLKVKTADALPAALSEAATH--DKIVIVEKSIEGG-GEYTACIAGDLDLPLIKIVPAGE 217 (317)
T ss_dssp HHHHC-SCEEEEECC-----CCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCSS-EEEEEEEETTCCCCCEEEEC---
T ss_pred HHhcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCCC-cEEEEEEECCcccceEEEeeCCc
Confidence 7899 99999999999999999999999999999887654 56899999999 9 99999999875555544433222
Q ss_pred -eCC-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--h--HH
Q 001014 323 -VDP-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S--AL 396 (1190)
Q Consensus 323 -~~~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~--~l 396 (1190)
++. .++..+......|+. ++++..+++++.+.+++++||++ |++++||++++ +|++||+|||||++-+ + +.
T Consensus 218 ~~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~~~a~~~~~~lg~~-G~~~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~ 294 (317)
T 4eg0_A 218 FYDYHAKYVANDTQYLIPCG-LPAEQETELKRIARRAFDVLGCT-DWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPK 294 (317)
T ss_dssp ------------CEEESSCS-SCHHHHHHHHHHHHHHHHTTTCC-SEEEEEEEECT-TCCEEEEEEESSCCCSTTSHHHH
T ss_pred eechhhcccCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHhCCC-ceEEEEEEEeC-CCCEEEEEeeCCCCCCcccHHHH
Confidence 222 245556777888997 99999999999999999999996 99999999997 7899999999988743 3 44
Q ss_pred HHHHhCCCHHHHHHHHH
Q 001014 397 ASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 397 ~~~atG~~l~~~~~~~a 413 (1190)
..+++|+++.+.+.++.
T Consensus 295 ~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 295 AARSIGIGYSELVVKVL 311 (317)
T ss_dssp HHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 56789999998877753
No 72
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=100.00 E-value=7.6e-34 Score=339.03 Aligned_cols=374 Identities=17% Similarity=0.210 Sum_probs=270.5
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHH-HhCCCeEEEecCC-CCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSL-QSAGYETIMMNSN-PETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al-~~~G~~vi~v~~~-p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
||||+|+|.. ....++++ +++|++++++++. +.. ...++....++.+.+.++++++++++|+|
T Consensus 2 ~ililG~g~r-----------~~~~a~~~~~~~g~~~v~~~~~~~~~----~~~~~~~~~~~~d~~~l~~~~~~~~~d~v 66 (422)
T 2xcl_A 2 NVLIIGKGGR-----------EHTLAWKAAQSSLVENVFAAPGNDGM----AASAQLVNIEESDHAGLVSFAKQNQVGLT 66 (422)
T ss_dssp EEEEEECSHH-----------HHHHHHHHTTCTTCSEEEEEECCGGG----TTTCEECCCCTTCHHHHHHHHHHTTEEEE
T ss_pred EEEEECCCHH-----------HHHHHHHHHhCCCCCEEEEeCCChhh----hhhccccccCcCCHHHHHHHHHHcCCCEE
Confidence 7999999952 12224444 5689998888653 221 12344333466789999999999999999
Q ss_pred ccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH
Q 001014 723 IVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA 802 (1190)
Q Consensus 723 i~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~ 802 (1190)
++.++......+++.++ +.| ++++||+++++.++.||..++++|+++|||+|++..+++.+++.+++
T Consensus 67 ~~~~E~~~~~~~~~~l~----------~~g---i~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~ 133 (422)
T 2xcl_A 67 IVGPEVPLIEGLVDEFE----------KAG---LHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYV 133 (422)
T ss_dssp EECSHHHHHTTHHHHHH----------HTT---CCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHH----------HCC---CCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHH
Confidence 98655333346777777 889 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----CCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeee
Q 001014 803 KEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----PERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIME 878 (1190)
Q Consensus 803 ~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e 878 (1190)
++++||+||||..+++|+|+.+++|.+|+.++++.+.... ...+++||+|| .|.|++|.+++|++ .++.+...+
T Consensus 134 ~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i-~g~E~sv~~~~dG~-~~~~~~~~~ 211 (422)
T 2xcl_A 134 QEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYL-SGEEFSLMAFVKGE-KVYPMVIAQ 211 (422)
T ss_dssp HHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECC-CSEEEEEEEEEETT-EEEECCCBE
T ss_pred HhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECC-cCcEEEEEEEEcCC-EEEecceee
Confidence 9999999999999999999999999999999998865421 13689999999 59999999999743 233333333
Q ss_pred eeec-----ccccccccccccCCCCCCHHHHHHHH-HHHHHHHHHc-----CCCcceeEEEEEecCCCEEEEEEccCCCC
Q 001014 879 HIEQ-----AGVHSGDSACMIPTKTISSSCLDTIS-SWTIKLAKRL-----NVCGLMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 879 ~~~~-----~g~~~gd~~~~~p~~~l~~~~~~~i~-~~a~~i~~~L-----g~~G~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
+... .+.+.|+.....|+..++++..+++. +++.+++++| ++.|++++||+++.+| +||+|+|||+++
T Consensus 212 ~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g-~~viEiN~R~g~ 290 (422)
T 2xcl_A 212 DHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG-SKVIEFNARFGD 290 (422)
T ss_dssp EEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCT
T ss_pred eeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC-cEEEEEecCCCC
Confidence 2211 23455555555677668998888885 4788888775 6789999999997666 999999999999
Q ss_pred Chh-hhhcccCCCHHHHHHHHHcCCCCCCCCCCccccCCeeEEee-----------ccCCCccc-CCCce-eeC------
Q 001014 948 TVP-FVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKE-----------AVLPFEKF-QGCDV-LLG------ 1007 (1190)
Q Consensus 948 s~~-~~~~~~G~~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~vk~-----------~~~~~~~~-~~~~~-~lg------ 1007 (1190)
+.+ .+...+|+|+.+++++++.|. ++++....... -.+.+.. ++..+..+ +++.. +.|
T Consensus 291 ~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~~~~~-~~~~~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~g~~~~~~ 368 (422)
T 2xcl_A 291 PETQVVLPRMESDLVQVLLDLLDDK-EVDLRWKDTAA-VSVVLASEGYPESYAKGTPIGSLAAETEQVVVFHAGTKAEGG 368 (422)
T ss_dssp TTHHHHGGGBCSCHHHHHHHHHTTC-CCCCCBCSCEE-EEEEEEETTTTSCCCSCCBCCCCCCCSSSEEEEESSEEECSS
T ss_pred cHHHHHHHhcCCCHHHHHHHHHcCC-cCcccccCCce-EEEEEECCCCCCCCCCCCcccCcccCCCCcEEEEeeeEeeCC
Confidence 754 356789999999999988885 33332111000 0011110 01111111 33322 124
Q ss_pred C---cccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCCh
Q 001014 1008 P---EMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTK 1053 (1190)
Q Consensus 1008 ~---~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~ 1053 (1190)
+ ....+|+|++.|+|.++|..++..+... +...| .+++.+++.+
T Consensus 369 ~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~-i~~~g-~~~r~di~~~ 415 (422)
T 2xcl_A 369 EFVTNGGRVANVTAFDETFEAARDRVYKAVDE-IFKPG-LFFRKDIGAR 415 (422)
T ss_dssp SEEECSSEEEEEEEEESSHHHHHHHHHHHHHH-HCCTT-EECCSCTTHH
T ss_pred EEEeCCCceEEEEEEeCCHHHHHHHHHHHHhc-ceeCC-cEecchhhHH
Confidence 2 1123789999999999999999887653 22345 6678777643
No 73
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=100.00 E-value=9.8e-34 Score=331.85 Aligned_cols=297 Identities=16% Similarity=0.192 Sum_probs=238.1
Q ss_pred CEEEEEcCCccccccccccch---HHHHHHHHH-HHCCCeEEEEccCCCCCCCCc-------------cCc-ce------
Q 001014 93 RKILILGAGPIVIGQACEFDY---SGTQACKAL-KEEGYEVILINSNPATIMTDP-------------GLA-DR------ 148 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al-~~~G~~vi~v~~~~~~~~~~~-------------~~a-d~------ 148 (1190)
+||+||+|| ++.|||+ ||.+++++| ++.||+|+.++.++.+.+... .+. +.
T Consensus 4 ~~v~vl~gG-----~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (377)
T 1ehi_A 4 KRVALIFGG-----NSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDA 78 (377)
T ss_dssp EEEEEEEEC-----SSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCT
T ss_pred cEEEEEeCC-----CCCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhcccccccccc
Confidence 589999998 4899997 599999999 999999999998876533210 000 00
Q ss_pred -EEECCCCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 149 -TYITPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 149 -~~i~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
.++.|. .+.. +.+++|+|+|.++|..+++..+ +++++.+|++++|++++++.++.||..++++|+++|||
T Consensus 79 ~~~~~~~---~~~~--~~~~~D~v~~~~~g~~gedg~~----~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip 149 (377)
T 1ehi_A 79 SDPLARI---HALK--SAGDFDIFFPVVHGNLGEDGTL----QGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIR 149 (377)
T ss_dssp TCTTCTT---GGGG--TTCCCSEEEEECCSTTTSSSHH----HHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCC
T ss_pred ccccCcc---hhhc--cccCCCEEEEecCCCCCcCHHH----HHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCC
Confidence 011111 1111 1357999999999998888766 67899999999999999999999999999999999999
Q ss_pred CCCeeecCCHHH----HHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeee
Q 001014 228 TPPSGIGNTLDE----CISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYE 303 (1190)
Q Consensus 228 vp~~~~v~s~~e----~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~s 303 (1190)
+|++..+.+.++ +.++.+++| ||+||||..+++|.|+.+|+|.+||.++++.++.. +..+|||+||+|++|++
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~g-~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~~ 226 (377)
T 1ehi_A 150 NTKYIVVDPESANNWSWDKIVAELG-NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--DYKVLIEEAVNGARELE 226 (377)
T ss_dssp CCCEEEECTTGGGGCCHHHHHHHHC-SCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCCSCEEE
T ss_pred CCCEEEEeccccchHHHHHHHHhcC-CCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCceEE
Confidence 999999988764 666777899 99999999999999999999999999999887655 46899999999988999
Q ss_pred EEEEEeCCCcEEEEEeeeeeC-----CC-------Ccccc-cEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEE
Q 001014 304 LEVMRDLADNVVIICSIENVD-----PM-------GVHTG-DSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNV 370 (1190)
Q Consensus 304 v~v~~d~~g~~~~~~~~e~~~-----~~-------g~~~g-~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~v 370 (1190)
+.++.+++..++.. .+... .. +++.| .+....|++ ++++..+++++++.+++++||++ |+++|
T Consensus 227 v~vl~~~~~~~~~~--~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~-G~~~v 302 (377)
T 1ehi_A 227 VGVIGNDQPLVSEI--GAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLR-GEARM 302 (377)
T ss_dssp EEEEESSSCEEEEE--EEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred EEEEcCCCcEEEee--EEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCC-cEEEE
Confidence 99998654333332 23221 11 13345 567788998 99999999999999999999997 99999
Q ss_pred EEEEecCCCcEEEEEeCCCCCCch----HHHHHHhCCCHHHHHHH
Q 001014 371 QFAVNPVDGEVMVIEMNPRVSRSS----ALASKATGFPIAKMAAK 411 (1190)
Q Consensus 371 ef~~~~~~g~~~viEiNpR~~gs~----~l~~~atG~~l~~~~~~ 411 (1190)
||++++ +|++||+|||||++.+. +....++|+|+.+.+.+
T Consensus 303 D~~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~ 346 (377)
T 1ehi_A 303 DFLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDM 346 (377)
T ss_dssp EEEECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHH
T ss_pred EEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 999997 78899999999998642 22345899999666444
No 74
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=100.00 E-value=7.9e-35 Score=337.44 Aligned_cols=301 Identities=19% Similarity=0.286 Sum_probs=243.6
Q ss_pred CCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccCc----ceEEECCCCHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTD-----PGLA----DRTYITPMTPELV 159 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~a----d~~~i~p~~~~~v 159 (1190)
++||+||+|| ++.|||+ ||.+++++|++.||+|+.++.+++..... ..+. +..++.|... .
T Consensus 3 ~~~v~vl~gG-----~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 75 (343)
T 1e4e_A 3 RIKVAILFGG-----CSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKK--M 75 (343)
T ss_dssp CEEEEEEEEC-----SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTT--T
T ss_pred CcEEEEEeCC-----CCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccc--c
Confidence 3689999987 5899998 79999999999999999999877543210 0111 3445544321 0
Q ss_pred HH-H------HHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee
Q 001014 160 EQ-V------LEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG 232 (1190)
Q Consensus 160 ~~-i------~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~ 232 (1190)
.. + .+.+++|+|+|.++|..+++..+ +++++.+|++++|+++.++.++.||..++++|+++|+|+|++.
T Consensus 76 ~~~~~~~~~~~~~~~~D~v~~~~~g~~ged~~~----~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~ 151 (343)
T 1e4e_A 76 HGLLVKKNHEYEINHVDVAFSALHGKSGEDGSI----QGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 151 (343)
T ss_dssp CEEEEEETTEEEEEECSEEEECCCSTTTTSSHH----HHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE
T ss_pred ccceeecccccccccCCEEEEeCCCCCCcCHHH----HHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEE
Confidence 11 1 12457999999999998888766 7789999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCC
Q 001014 233 IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLAD 312 (1190)
Q Consensus 233 ~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g 312 (1190)
.+++.+++.. +.++ ||+||||..+++|.|+.++++.+||.++++.+... ..++|||+||+| +|+++.++.+.++
T Consensus 152 ~~~~~~~~~~--~~~~-~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~I~G-~E~~v~vl~~~~~ 225 (343)
T 1e4e_A 152 VINKDDRPVA--ATFT-YPVFVKPARSGSSFGVKKVNSADELDYAIESARQY--DSKILIEQAVSG-CEVGCAVLGNSAA 225 (343)
T ss_dssp EECTTCCCCG--GGSC-SCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEEEEETTC
T ss_pred EEechhhhhh--hccC-CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEeCcCC-eEEEEEEEeCCCC
Confidence 9988765432 5789 99999999999999999999999999999887654 568999999999 9999999998655
Q ss_pred cEEEEEeeee------eCC-CCcc----cccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcE
Q 001014 313 NVVIICSIEN------VDP-MGVH----TGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEV 381 (1190)
Q Consensus 313 ~~~~~~~~e~------~~~-~g~~----~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~ 381 (1190)
+.+++..+. ++. .+++ .|.+....|+. ++++..+++++.+.+++++||+. |++++||++++ +|++
T Consensus 226 -~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~alg~~-G~~~vD~~~~~-~g~~ 301 (343)
T 1e4e_A 226 -LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCR-GLARVDMFLQD-NGRI 301 (343)
T ss_dssp -CEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHHHHHHHHTTCE-EEEEEEEEECT-TCCE
T ss_pred -eEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEeC-CCCE
Confidence 333333332 221 2445 57777788997 99999999999999999999996 99999999987 7899
Q ss_pred EEEEeCCCCCCc----hHHHHHHhCCCHHHHHHHHH
Q 001014 382 MVIEMNPRVSRS----SALASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 382 ~viEiNpR~~gs----~~l~~~atG~~l~~~~~~~a 413 (1190)
||+|||||++++ .+...+++|+|+.+.+.++.
T Consensus 302 ~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 302 VLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999885 24456778999998877653
No 75
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-34 Score=336.75 Aligned_cols=304 Identities=17% Similarity=0.236 Sum_probs=240.0
Q ss_pred CCcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecC-----------CCCCcCccccCCcceeecCCc-
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNS-----------NPETVSTDYDTSDRLYFEPLT- 706 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~-----------~p~~~s~~~~~ad~~~~~p~~- 706 (1190)
++|||.||-||. +.|++.| +.+++++|++.||+++.++. +++....+....|..++.|..
T Consensus 2 ~kkkv~vl~GG~-----S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 4fu0_A 2 QNKKIAVIFGGN-----STEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVV 76 (357)
T ss_dssp CCEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSCTHHHHTTCGGGCGGGEEEEEE
T ss_pred CCCEEEEEECCC-----ccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCCHHHhhcCcchhhhhccccccc
Confidence 468999996654 6688876 55778999999999999853 444444555556665554432
Q ss_pred ---------HHHHHHHhhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHH
Q 001014 707 ---------VEDVLNVIDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERF 775 (1190)
Q Consensus 707 ---------~e~v~~i~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~ 775 (1190)
.+......+..++|.|++...|. +...++..|+ ..| ++++|+++.++.+++||..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le----------~~g---ip~~G~~~~a~~~~~DK~~~ 143 (357)
T 4fu0_A 77 SQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFE----------LAG---IPVVGCDTLSSALCMDKDRA 143 (357)
T ss_dssp CCCTTTCEEEEC----CEEEECSEEEECCCSHHHHSSHHHHHHH----------HTT---CCBSSCCHHHHHHHHCHHHH
T ss_pred cccccccchhhhhhhhHhhcCCCEEEECCcCccccCHHHHHHHH----------HCC---CcEECcCHHHHHHHhCHHHH
Confidence 24455666778899999887766 3446777787 899 99999999999999999999
Q ss_pred HHHHHHcCCCCCCceeecCHHH---HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEe
Q 001014 776 NAIIKELSIEQPKGGIAKSEAD---ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKY 852 (1190)
Q Consensus 776 ~~~l~~~gIp~p~~~~~~s~~e---~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEef 852 (1190)
+++|+++|||+|++..+.+.++ +.++++++|||+||||+++++|+||.+|+|.+||.+++..+... +..+++|+|
T Consensus 144 k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~--~~~vlvE~~ 221 (357)
T 4fu0_A 144 HKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH--DTEVIVEET 221 (357)
T ss_dssp HHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT--CSEEEEEEC
T ss_pred HHHHHHCCCCCCCEEeecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc--CCeEEEEEe
Confidence 9999999999999988876543 45567789999999999999999999999999999999987653 568999999
Q ss_pred cCCcceEEEeEEecCCCcEEEEeeeeeeec------ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeE
Q 001014 853 LSDAIEIDVDALADSCGNVVIGGIMEHIEQ------AGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNC 926 (1190)
Q Consensus 853 I~~g~E~~v~v~~d~~G~v~~~~i~e~~~~------~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~i 926 (1190)
| .|+|++|.++.++. .....+.+.... ...+.++.....+|..+++++.+++++++.+++++||++|+++|
T Consensus 222 i-~G~e~~v~vl~~~~--~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~V 298 (357)
T 4fu0_A 222 I-NGFEVGCAVLGIDE--LIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRV 298 (357)
T ss_dssp C-CSEEEEEEEEESSS--EEECCCEEEEECHHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred c-CCEEEEEEEEecCC--ceEEEEEEEEcccccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 9 89999999998754 333333333221 22333444445566689999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 927 QYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 927 ef~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
||++|++|++||+|||||||-+ +|...+++|+|+.+++.+++
T Consensus 299 Df~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li 344 (357)
T 4fu0_A 299 DMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 (357)
T ss_dssp EEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHH
Confidence 9999888999999999999875 56778899999999877653
No 76
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=100.00 E-value=1.6e-34 Score=337.57 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=234.2
Q ss_pred CCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCccC-------cceEEE-CCCCHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDPGL-------ADRTYI-TPMTPELVE 160 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~-------ad~~~i-~p~~~~~v~ 160 (1190)
++||+||+|| ++.|||+ ||++++++|++.||+|+.++.+++..+..... .+..++ .|.+.+ +.
T Consensus 3 ~~~v~vl~gg-----~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (364)
T 2i87_A 3 KENICIVFGG-----KSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALE-IS 76 (364)
T ss_dssp CEEEEEEEEC-----SSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEEC-SS
T ss_pred CcEEEEEECC-----CCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccccccccc-cc
Confidence 3589999987 5899995 57889999999999999999877643211000 001111 111100 01
Q ss_pred HHH----HHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCC
Q 001014 161 QVL----EKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNT 236 (1190)
Q Consensus 161 ~i~----~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s 236 (1190)
.++ +.+++|+|+|.++|..+++..+ +++++.+|++++|++++++.++.||..++++|+++|||+|++..+.+
T Consensus 77 ~~~~~~~~~~~~D~v~~~~~g~~~ed~~~----~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~ 152 (364)
T 2i87_A 77 QLLKESSSGQPYDAVFPLLHGPNGEDGTI----QGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLR 152 (364)
T ss_dssp GGGGBCTTSSBCSEEEEECCCSSSCTTHH----HHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEH
T ss_pred ccccccccccCCCEEEEeCCCCCCcCHHH----HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEec
Confidence 122 3567999999999888877665 67899999999999999999999999999999999999999999887
Q ss_pred HH-------HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEe
Q 001014 237 LD-------ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRD 309 (1190)
Q Consensus 237 ~~-------e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d 309 (1190)
.+ ++.++.++++ ||+||||..+++|.|+.+|++.+||..+++.+... +..+|||+||+| +|+++.++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~g-~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~I~G-~E~~v~vl~~ 228 (364)
T 2i87_A 153 SEYEKYEHNILKLVNDKLN-YPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQF--DRKLVIEQGVNA-REIEVAVLGN 228 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCC-SSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTT--CSEEEEEECCCC-EEEEEEEEES
T ss_pred hhhcccchhHHHHHHHhcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCeEEEEeCccC-eEEEEEEEcC
Confidence 75 4666778899 99999999999999999999999999999887654 568999999999 9999999987
Q ss_pred CCCcEEEEEeee----eeCC-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEE
Q 001014 310 LADNVVIICSIE----NVDP-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVI 384 (1190)
Q Consensus 310 ~~g~~~~~~~~e----~~~~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~vi 384 (1190)
+++.++...... .++. .+++.|.+....|+. ++++..+++++++.+++++||+. |+++|||++++ +|++||+
T Consensus 229 ~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a~~~~~alg~~-G~~~vD~~~~~-~g~~~vi 305 (364)
T 2i87_A 229 DYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMALEAFKATDCS-GLVRADFFVTE-DNQIYIN 305 (364)
T ss_dssp SSCEECCCEEECCSCCC-----------CCEESSCS-SCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TCCEEEE
T ss_pred CCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCC-cEEEEEEEEec-CCCEEEE
Confidence 543222111111 1222 134455566778997 99999999999999999999996 99999999987 7889999
Q ss_pred EeCCCCCCc--h--HHHHHHhCCCHHHHHHHH
Q 001014 385 EMNPRVSRS--S--ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 385 EiNpR~~gs--~--~l~~~atG~~l~~~~~~~ 412 (1190)
|||||++++ + +...+++|+|+.+.+.++
T Consensus 306 EiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 337 (364)
T 2i87_A 306 ETNAMPGFTAFSMYPKLWENMGLSYPELITKL 337 (364)
T ss_dssp EEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred EEeCCCCCCchhHHHHHHHHhCCCHHHHHHHH
Confidence 999999874 2 345667899998775554
No 77
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=100.00 E-value=2.8e-34 Score=334.13 Aligned_cols=303 Identities=17% Similarity=0.193 Sum_probs=232.1
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCc-----------------ceEEE
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLA-----------------DRTYI 151 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~a-----------------d~~~i 151 (1190)
++||+||-||. +.||| .||..++++|++.||+|+.++.+++..+...... ....+
T Consensus 4 ~~~v~vl~GG~-----S~E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (372)
T 3tqt_A 4 KLHISVLCGGQ-----STEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDHLVKEGSARPITI 78 (372)
T ss_dssp SEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECCHHHHHHSCHHHHHHHTCSEEEEE
T ss_pred CCEEEEEeccC-----CCccHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEeccchhhhhccccccccccccccceee
Confidence 35899999984 89999 5799999999999999999998766432110000 01111
Q ss_pred CCCCHH-HHH--HHHH-HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 152 TPMTPE-LVE--QVLE-KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 152 ~p~~~~-~v~--~i~~-~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
.+.... .+. .-.. ..++|+|+|.++|..+++..+ +++|+.+|+|++|+++.++.++.||..+|++|+++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~i----q~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp 154 (372)
T 3tqt_A 79 AFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGAL----QGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIP 154 (372)
T ss_dssp CTTCSSCCEEEC----CEECCSEEEECCCSTTTTSSHH----HHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cccccccceeeccccccccCCCEEEEcCCCCCCcCHHH----HHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcC
Confidence 110000 000 0001 157999999999999999888 89999999999999999999999999999999999999
Q ss_pred CCCeeecCCHHH----HHHHHHHcCCCc-EEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeee
Q 001014 228 TPPSGIGNTLDE----CISIANEIGEFP-LIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEY 302 (1190)
Q Consensus 228 vp~~~~v~s~~e----~~~~~~~ig~~P-vVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~ 302 (1190)
+|++..+++.++ +.++.+++| || +||||..+++|.|+.+|++.+||.++++.++.. +.++|||+||+| +|+
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~lg-~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 155 VVDWHTLSPRDATEGVYQRLLDRWG-TSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY--DDRLMVEPRIRG-REI 230 (372)
T ss_dssp BCCCEEECTTSCCTTHHHHHHHHC----CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCS-EEE
T ss_pred CCCEEEEechhhhhhHHHHHHHhcC-CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEECCCCC-EEE
Confidence 999999987664 556778899 99 999999999999999999999999999887665 568999999999 999
Q ss_pred eEEEEEeCCCcEEEEEeee------eeCC-CCccccc-EEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEE
Q 001014 303 ELEVMRDLADNVVIICSIE------NVDP-MGVHTGD-SITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAV 374 (1190)
Q Consensus 303 sv~v~~d~~g~~~~~~~~e------~~~~-~g~~~g~-~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~ 374 (1190)
++.++.++. ..+....+ .++. .+++.+. +....|++ ++++..+++++.+.+++++||++ |+++|||++
T Consensus 231 ~v~vl~~~~--~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G~~rvDf~~ 306 (372)
T 3tqt_A 231 ECAVLGNGA--PKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAIDAFKMVHCS-GMARVDFFV 306 (372)
T ss_dssp EEEEEESSS--CEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEE
T ss_pred EEEEEeCCC--ceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-cEEEEEEEE
Confidence 999998653 22222222 2222 2345566 77889998 99999999999999999999997 999999999
Q ss_pred ecCCCcEEEEEeCCCCC--Cc--hHHHHHHhCCCHHHHHHHH
Q 001014 375 NPVDGEVMVIEMNPRVS--RS--SALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 375 ~~~~g~~~viEiNpR~~--gs--~~l~~~atG~~l~~~~~~~ 412 (1190)
++ +|++||+|||||++ .. .+...+++|+|+.+++.++
T Consensus 307 ~~-dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 307 TP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp CT-TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred eC-CCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 97 78999999998776 33 3446788999998876654
No 78
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=100.00 E-value=9.5e-34 Score=330.61 Aligned_cols=295 Identities=19% Similarity=0.248 Sum_probs=229.7
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----cCc--c----------eEEE
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDP-----GLA--D----------RTYI 151 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----~~a--d----------~~~i 151 (1190)
++||+||.||. +.||| .||.+++++|++.||+|+.++.+++..+... ... + ...+
T Consensus 37 ~~~v~vl~GG~-----S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (383)
T 3k3p_A 37 KETLVLLYGGR-----SAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKI 111 (383)
T ss_dssp CEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEE
T ss_pred CCeEEEEeCCC-----CCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccc
Confidence 35899999984 89999 6899999999999999999997765322100 000 0 0001
Q ss_pred CCCCHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcC-CCCCC
Q 001014 152 TPMTPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIG-VKTPP 230 (1190)
Q Consensus 152 ~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~G-ipvp~ 230 (1190)
.+ .. ++ .++|+|+|.++|..+++..+ +++|+.+|+|++|++..++.++.||..+|++|+++| ||+|+
T Consensus 112 ~~---~~---~~--~~~D~vf~~lhG~~GEdg~i----q~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~ 179 (383)
T 3k3p_A 112 KP---SD---IY--EEEAVVFPVLHGPMGEDGSI----QGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVA 179 (383)
T ss_dssp CG---GG---GC--CTTCEEEEECCSTTTSSSHH----HHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCC
T ss_pred cc---cc---cc--cCCCEEEEcCCCCCcchHHH----HHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCC
Confidence 11 01 11 37999999999999999888 899999999999999999999999999999999999 99999
Q ss_pred eeecCCH----HHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEE
Q 001014 231 SGIGNTL----DECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEV 306 (1190)
Q Consensus 231 ~~~v~s~----~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v 306 (1190)
+..+.+. +++.++.++++ ||+||||..+++|.|+.+|++.+||.++++.++.. +..+|||+||+| +|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~--~~~vlVEe~I~G-~E~~v~v 255 (383)
T 3k3p_A 180 YVALIEGEPLESKLAEVEEKLI-YPVFVKPANMGSSVGISKAENRTDLKQAIALALKY--DSRVLIEQGVDA-REIEVGI 255 (383)
T ss_dssp EEEEETTSCHHHHHHHHHHHCC-SSEEEEECC------CEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEEEEEE
T ss_pred EEEEeCccchhHHHHHHHHhcC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCC-eEEEEEE
Confidence 9998876 46777888999 99999999999999999999999999999988776 468999999999 9999999
Q ss_pred EEeCCCcEEEEEeeee------eCC-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCC
Q 001014 307 MRDLADNVVIICSIEN------VDP-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDG 379 (1190)
Q Consensus 307 ~~d~~g~~~~~~~~e~------~~~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g 379 (1190)
+.++. ..++...+. +++ .++..+.+....|++ ++++..+++++.+.+++++||++ |++++||++++ +|
T Consensus 256 l~d~~--~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G~~~vDf~~~~-~g 330 (383)
T 3k3p_A 256 LGNTD--VKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCC-GLSRCDFFLTE-DG 330 (383)
T ss_dssp EESSS--CEECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT-TC
T ss_pred EeCCC--eeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEEC-CC
Confidence 98643 322222222 222 134456677889998 99999999999999999999997 99999999997 78
Q ss_pred cEEEEEeCCCCCCc----hHHHHHHhCCCHHHHHHHH
Q 001014 380 EVMVIEMNPRVSRS----SALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 380 ~~~viEiNpR~~gs----~~l~~~atG~~l~~~~~~~ 412 (1190)
++||+|||||++-+ .+....++|+++.+.+.++
T Consensus 331 ~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 331 KVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp CEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHH
T ss_pred CEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 89999999998842 3556778899998876654
No 79
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=100.00 E-value=8.9e-34 Score=332.09 Aligned_cols=305 Identities=17% Similarity=0.258 Sum_probs=238.3
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc------------------CcceEE
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPG------------------LADRTY 150 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~------------------~ad~~~ 150 (1190)
++||+|+-||. +.||| .||..++++|++.||+|+.++.+++..+.... .+....
T Consensus 22 ~~~v~vl~GG~-----S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
T 3e5n_A 22 KIRVGLIFGGK-----SAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVA 96 (386)
T ss_dssp CEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEE
T ss_pred CceEEEEeccC-----CCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhcccccccccccccccccee
Confidence 35899999984 89999 67999999999999999999977653211000 011122
Q ss_pred ECCCCHH-H---HHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCC
Q 001014 151 ITPMTPE-L---VEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGV 226 (1190)
Q Consensus 151 i~p~~~~-~---v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gi 226 (1190)
+.|.... . ........++|+|+|.++|..+++..+ +++|+.+|+|++|+++.++.++.||..+|++|+++||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~i----q~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GI 172 (386)
T 3e5n_A 97 LLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSL----QGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARL 172 (386)
T ss_dssp ECTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHH----HHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTC
T ss_pred eccCccccceeccccccccCCCCEEEEcCCCCCCcCHHH----HHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCC
Confidence 2221100 0 000012457999999999999999887 8899999999999999999999999999999999999
Q ss_pred CCCCeeecCCHH----HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeee
Q 001014 227 KTPPSGIGNTLD----ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEY 302 (1190)
Q Consensus 227 pvp~~~~v~s~~----e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~ 302 (1190)
|+|++..+.+.+ ++.++.+++| ||+||||..+++|.|+.+|++.+||.++++.++.. +..+|||+||+| +|+
T Consensus 173 p~p~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 173 AVAPFVCFDRHTAAHADVDTLIAQLG-LPLFVKPANQGSSVGVSQVRTADAFAAALALALAY--DHKVLVEAAVAG-REI 248 (386)
T ss_dssp CBCCEEEEEHHHHTTCCHHHHHHHHC-SSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCS-EEE
T ss_pred CCCCEEEEeCcccchhhHHHHHHhcC-CCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC--CCcEEEEcCCCC-eEE
Confidence 999999998887 7788888999 99999999999999999999999999999987765 568999999999 999
Q ss_pred eEEEEEeCCCcEEEEEeee----eeCCC-Cccc-ccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec
Q 001014 303 ELEVMRDLADNVVIICSIE----NVDPM-GVHT-GDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP 376 (1190)
Q Consensus 303 sv~v~~d~~g~~~~~~~~e----~~~~~-g~~~-g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~ 376 (1190)
++.++.++...++....+. .++.. ++.. +.+....|++ ++++..+++++.+.+++++||++ |++++||++++
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G~~~vDf~~~~ 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIAVQAYQALGCA-GMARVDVFLCA 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEECT
T ss_pred EEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCc-cEEEEEEEEEC
Confidence 9999987653333222221 12221 2222 3366778998 99999999999999999999996 99999999997
Q ss_pred CCCcEEEEEeCCCCCCc----hHHHHHHhCCCHHHHHHHH
Q 001014 377 VDGEVMVIEMNPRVSRS----SALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 377 ~~g~~~viEiNpR~~gs----~~l~~~atG~~l~~~~~~~ 412 (1190)
+|++||+|||||++-+ .+...+++|+++.+.+.++
T Consensus 327 -dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 327 -DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred -CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 7889999999988753 2445678899998876554
No 80
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=100.00 E-value=5.5e-33 Score=323.96 Aligned_cols=305 Identities=18% Similarity=0.259 Sum_probs=241.4
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC------------------cceEE
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGL------------------ADRTY 150 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~------------------ad~~~ 150 (1190)
++||+|+-||. +.||| .||.+++++|++.||+|+.++.+.+..+..... +....
T Consensus 3 ~~~v~vl~GG~-----S~E~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
T 3i12_A 3 KLRVGIVFGGK-----SAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLA 77 (364)
T ss_dssp CEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEE
T ss_pred ccEEEEEeccC-----CCCccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccce
Confidence 35899999984 89999 679999999999999999999766532211000 01111
Q ss_pred ECCCCHH-HH---HHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCC
Q 001014 151 ITPMTPE-LV---EQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGV 226 (1190)
Q Consensus 151 i~p~~~~-~v---~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gi 226 (1190)
+.|.... .+ .......++|+|+|.++|..+++..+ +++|+.+|+|++|++..++.++.||..+|++|+++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~i----q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gi 153 (364)
T 3i12_A 78 QVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSL----QGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGL 153 (364)
T ss_dssp ECTTCSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHH----HHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTC
T ss_pred ecccccccceeccccccccCCCCEEEEeCCCCCCcCHHH----HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCC
Confidence 2221000 00 00001357999999999999999887 8899999999999999999999999999999999999
Q ss_pred CCCCeeecCCHH----HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeee
Q 001014 227 KTPPSGIGNTLD----ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEY 302 (1190)
Q Consensus 227 pvp~~~~v~s~~----e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~ 302 (1190)
|+|++..+++.+ ++.++.+++| ||+||||..+++|.|+.++++.+||.++++.++.. +..++||+||+| +|+
T Consensus 154 p~p~~~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 229 (364)
T 3i12_A 154 NIAPFITLTRTNRHAFSFAEVESRLG-LPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF--DHKVVVEQGIKG-REI 229 (364)
T ss_dssp CBCCEEEEETTTGGGCCHHHHHHHHC-SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEE
T ss_pred CCCCEEEEEccccchhhHHHHHHhcC-CCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc--CCcEEEEcCcCC-eEE
Confidence 999999998877 7888888999 99999999999999999999999999999988776 468999999999 999
Q ss_pred eEEEEEeCCCcEEEEEeee----eeCCC-Cccccc-EEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec
Q 001014 303 ELEVMRDLADNVVIICSIE----NVDPM-GVHTGD-SITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP 376 (1190)
Q Consensus 303 sv~v~~d~~g~~~~~~~~e----~~~~~-g~~~g~-~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~ 376 (1190)
++.++.++...+.....+. .++.. .+..+. .....|++ ++++..+++++.+.+++++||++ |++++||++++
T Consensus 230 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~-G~~~vD~~~~~ 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCA-GMARVDVFLTA 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHHHHHHHHTTCC-EEEEEEEEECT
T ss_pred EEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-eEEEEEEEEec
Confidence 9999987653333332221 22222 233344 77788998 99999999999999999999996 99999999997
Q ss_pred CCCcEEEEEeCCCCCC--ch--HHHHHHhCCCHHHHHHHH
Q 001014 377 VDGEVMVIEMNPRVSR--SS--ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 377 ~~g~~~viEiNpR~~g--s~--~l~~~atG~~l~~~~~~~ 412 (1190)
+|++||+|||||++. .+ +...+++|+|+.+.+.++
T Consensus 308 -~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 308 -DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHH
Confidence 789999999966553 33 445778899999876654
No 81
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-32 Score=327.70 Aligned_cols=290 Identities=18% Similarity=0.237 Sum_probs=239.6
Q ss_pred ccCcceEEEC-C--C-C----HHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcH
Q 001014 143 PGLADRTYIT-P--M-T----PELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDR 214 (1190)
Q Consensus 143 ~~~ad~~~i~-p--~-~----~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK 214 (1190)
...+|+.|+. + . + .+.+.++++++++|+|+|..+ ..+. .+ ..+++.+|++ |++++++.++.||
T Consensus 70 ~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~sE--~~l~---~~--a~~~e~~Gi~--g~~~~ai~~~~DK 140 (474)
T 3vmm_A 70 FEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTNNE--LFIA---PM--AKACERLGLR--GAGVQAAENARDK 140 (474)
T ss_dssp GCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEESCG--GGHH---HH--HHHHHHTTCC--CSCHHHHHHTTCH
T ss_pred hhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEECCc--ccHH---HH--HHHHHHcCCC--CCCHHHHHHhhCH
Confidence 5567777643 2 1 2 257888999999999999544 2111 11 3468889998 9999999999999
Q ss_pred HHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc----------
Q 001014 215 DLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA---------- 284 (1190)
Q Consensus 215 ~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~---------- 284 (1190)
..++++|+++|+|+|++..+++.+++.++++++| ||+||||..++||+|+.++++.+||.++++.+...
T Consensus 141 ~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg-~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~ 219 (474)
T 3vmm_A 141 NKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIG-TPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAV 219 (474)
T ss_dssp HHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSC-SSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTC
T ss_pred HHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcC-CCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999999 99999999999999999999999999999887642
Q ss_pred CCCCcEEEeeecCCCe-----------eeeEEEEEeCCCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHH
Q 001014 285 SLTSQVLVEKSLLGWK-----------EYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 353 (1190)
Q Consensus 285 ~~~~~vlVEe~I~G~~-----------E~sv~v~~d~~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~ 353 (1190)
.....++|||||+|++ |++++++.. +|+...++..++..... .++.....|+. ++++..+++++.
T Consensus 220 ~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~-dg~~~~v~i~~~~~~~~--~~~~~~~~Pa~-l~~~~~~~l~~~ 295 (474)
T 3vmm_A 220 TFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMA-DGEYFPIAIHDKTPQIG--FTETSHITPSI-LDEEAKKKIVEA 295 (474)
T ss_dssp CCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEE-TTEEEEEEEEEECCCBT--TBCCEEEESCC-CCHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCceeeeeecccccceeEEEEEEE-CCeEEEEEEEeeccCCC--ccceEEEECCC-CCHHHHHHHHHH
Confidence 2247899999999954 288886653 45655555445433222 46778889995 999999999999
Q ss_pred HHHHHHHhCCccceE-EEEEEEecCCCcEEEEEeCCCCCC--chHHHHHHhCCCHHHHHHHHHc-CCCCCCCCccccCCC
Q 001014 354 SIAIIREIGVECGGS-NVQFAVNPVDGEVMVIEMNPRVSR--SSALASKATGFPIAKMAAKLSV-GYSLDQIPNDITKKT 429 (1190)
Q Consensus 354 a~~i~~~lg~~~G~~-~vef~~~~~~g~~~viEiNpR~~g--s~~l~~~atG~~l~~~~~~~al-G~~l~~~~~~i~~~~ 429 (1190)
+.++++++|++ |.+ |+||++++ +|++||||||||++| .++++++++|+|++++++++++ |.+++..++.++...
T Consensus 296 a~~~~~alG~~-g~~~~vef~~~~-dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~G~~l~~~~~~~~~~~ 373 (474)
T 3vmm_A 296 AKKANEGLGLQ-NCATHTEIKLMK-NREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEP 373 (474)
T ss_dssp HHHHHHHHTCC-SEEEEEEEEEEG-GGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHHGGGSCCCSSCCCCCS
T ss_pred HHHHHHHcCCC-CccEEEEEEEcC-CCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcCCCCCCCCcccccCCC
Confidence 99999999997 777 79999998 788999999999996 4688999999999999999999 999998888777544
Q ss_pred ----CccccCCcCeEEeeeceee
Q 001014 430 ----PASFEPSIDYVVTKIPRFA 448 (1190)
Q Consensus 430 ----~~~f~p~~~~v~~k~p~~~ 448 (1190)
..+|+|..++++.++|+|.
T Consensus 374 ~~~~~~~~~p~~~~~~~~~p~~~ 396 (474)
T 3vmm_A 374 YYVADCHLYPQHFKQNGQIPETA 396 (474)
T ss_dssp SEEEEEEECHHHHHHTTSSCTTC
T ss_pred ceeEEEEEeccccccccccCCcc
Confidence 4568899998888888664
No 82
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=100.00 E-value=4.1e-33 Score=319.81 Aligned_cols=293 Identities=20% Similarity=0.275 Sum_probs=232.0
Q ss_pred CEEEEEcCCccccccccccchH---HHHHHHHHHHCCCeEEEEccCCC--CCCCC---ccCcceE---EECCCCHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYS---GTQACKALKEEGYEVILINSNPA--TIMTD---PGLADRT---YITPMTPELVEQ 161 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~s---g~~~~~al~~~G~~vi~v~~~~~--~~~~~---~~~ad~~---~i~p~~~~~v~~ 161 (1190)
+||+||+|| ++.|||+| |.+++++|++ +|+.++.+++ +..++ ..+++.. ++.+. .+.+
T Consensus 4 ~~v~vl~gg-----~s~E~~vSl~s~~~v~~al~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 72 (322)
T 2fb9_A 4 MRVLLIAGG-----VSPEHEVSLLSAEGVLRHIPF---PTDLAVIAQDGRWLLGEKALTALEAKAAPEGEHPF-PPPL-- 72 (322)
T ss_dssp CCEEEEEEC-----SSTTHHHHHHHHHHHHHHCSS---CEEEEEECTTSCEECHHHHHHHTTSSCCCCCCBCS-SCCC--
T ss_pred cEEEEEeCC-----CchhHHHHHHHHHHHHHHhcc---CeEEEEEcCCCCEEecccchhhhccccccceeccc-cccc--
Confidence 589999987 59999976 9999999988 7777764443 22100 0111111 01110 0000
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHH
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECI 241 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~ 241 (1190)
+.+++|+|+|.++|..+++..+ +++++.+|++++|++..++.++.||..++++|+++|+|+|++..+++.++.
T Consensus 73 --~~~~~D~v~~~~hg~~gedg~i----~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~- 145 (322)
T 2fb9_A 73 --SWERYDVVFPLLHGRFGEDGTV----QGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPP- 145 (322)
T ss_dssp --CCTTCSEEEEECCSTTTTSSHH----HHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCC-
T ss_pred --cccCCCEEEEeCCCCCCccHHH----HHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECchhh-
Confidence 2568999999999998888766 788999999999999999999999999999999999999999988876541
Q ss_pred HHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeee
Q 001014 242 SIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIE 321 (1190)
Q Consensus 242 ~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e 321 (1190)
.. +++ ||+||||..+++|.|+.++++.+||.++++.++.. +.+++||+||+|++|+++.++.++++.++..+...
T Consensus 146 -~~-~~g-~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~ 220 (322)
T 2fb9_A 146 -VV-PFD-PPFFVKPANTGSSVGISRVERFQDLEAALALAFRY--DEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVR 220 (322)
T ss_dssp -CC-CSC-SCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEE
T ss_pred -hh-ccC-CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEe
Confidence 22 689 99999999999999999999999999999887654 56899999999988999999986654444433332
Q ss_pred ----eeCCC-CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc--h
Q 001014 322 ----NVDPM-GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS--S 394 (1190)
Q Consensus 322 ----~~~~~-g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs--~ 394 (1190)
.+++. ++++|.+....|+. ++++..+++++.+.+++++||++ |++++||+++ +|++||+|||||++.+ +
T Consensus 221 ~~~~~~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~-G~~~vD~~~~--~g~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 221 YEAPFYDYETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVR-GMARVDFFLA--EGELYLNELNTIPGFTPTS 296 (322)
T ss_dssp EECCEEETTTEEECCEEEEESSCC-CCTTHHHHHHHHHHHHHHHHTCC-SEEEEEEEEE--TTEEEEEEEESSCCCSSSC
T ss_pred eCCCccCHHHcccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-eEEEEEEEEE--CCcEEEEEEECCCCCCccc
Confidence 33433 45667677789997 99999999999999999999997 9999999999 7899999999999885 2
Q ss_pred --HHHHHHhCCCHHHHHHHH
Q 001014 395 --ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 395 --~l~~~atG~~l~~~~~~~ 412 (1190)
+....++|+|+.+.+.++
T Consensus 297 ~~p~~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 297 MYPRLFEAGGVAYPELLRRL 316 (322)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 334567899988887664
No 83
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.7e-33 Score=322.93 Aligned_cols=305 Identities=18% Similarity=0.220 Sum_probs=233.0
Q ss_pred CCCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCC--ccCcc-----eEE----------
Q 001014 91 DLRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTD--PGLAD-----RTY---------- 150 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--~~~ad-----~~~---------- 150 (1190)
+++||+||.||. +.||| .||..++++|.+.+|+|+.++.+++..+.. ....+ ..+
T Consensus 9 ~~~~v~vl~GG~-----S~E~~vS~~sa~~v~~~l~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 3lwb_A 9 RRVRVAVVFGGR-----SNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTE 83 (373)
T ss_dssp TCEEEEEEEEC----------CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC---------------------
T ss_pred CCcEEEEEecCC-----CCChhhHHHHHHHHHHHhhhcCceEEEEEecCCCCeEecCchhhhhhcccccccccccccccc
Confidence 346899999985 89999 469999999999999999998776532210 00000 000
Q ss_pred --EC--CCCHHHHH-H----HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHH
Q 001014 151 --IT--PMTPELVE-Q----VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAM 221 (1190)
Q Consensus 151 --i~--p~~~~~v~-~----i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l 221 (1190)
+. |.....+. . ..+..++|+|+|.++|..+++..+ +++|+.+|++++|++..++.++.||..+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vfp~lhG~~gEdg~i----q~lle~~gip~vG~~~~a~~~~~DK~~~k~~l 159 (373)
T 3lwb_A 84 LALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTI----QGLLELAGVPYVGAGVLASAVGMDKEFTKKLL 159 (373)
T ss_dssp -------------CCCCTTHHHHHHTCSEEEECCEETTEECCHH----HHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHH
T ss_pred eEeeccccccceeeccccccccccCCccEEEECCCCCCCccHHH----HHHHHHcCCCccCCcHHHHHHHcCHHHHHHHH
Confidence 00 00000000 0 011237999999999999999888 88999999999999999999999999999999
Q ss_pred HHcCCCCCCeeecCCHHH--HHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCC
Q 001014 222 KTIGVKTPPSGIGNTLDE--CISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGW 299 (1190)
Q Consensus 222 ~~~Gipvp~~~~v~s~~e--~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~ 299 (1190)
+++|||+|++..+++.++ ..+..++++ ||+||||+.+++|.|+.+|++.+||.++++.++.. +..+|||+||+|
T Consensus 160 ~~~GIp~p~~~~~~~~~~~~~~~~~~~lg-~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G- 235 (373)
T 3lwb_A 160 AADGLPVGAYAVLRPPRSTLHRQECERLG-LPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH--DPKVIVEAAISG- 235 (373)
T ss_dssp HHTTCCBCCEEEECTTCCCCCHHHHHHHC-SCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT--CSSEEEEECCEE-
T ss_pred HHcCcCCCCEEEEECcccchhHHHHHhcC-CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEeCCCCC-
Confidence 999999999999987664 233467899 99999999999999999999999999999988765 568999999999
Q ss_pred eeeeEEEEEeCCCcEEEEEeeeeeCC-------------CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 001014 300 KEYELEVMRDLADNVVIICSIENVDP-------------MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECG 366 (1190)
Q Consensus 300 ~E~sv~v~~d~~g~~~~~~~~e~~~~-------------~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G 366 (1190)
+|+++.++.+..+.+.+.+..+.... .+++.+.+....|+. ++++..+++++.+.+++++||++ |
T Consensus 236 ~E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G 313 (373)
T 3lwb_A 236 RELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAIRQLAIRAFAAIDCR-G 313 (373)
T ss_dssp EEEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCC-S
T ss_pred eEEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-c
Confidence 99999999987654344333333211 123456667788998 99999999999999999999996 9
Q ss_pred eEEEEEEEecCCCcEEEEEeCCCCCCc--h--HHHHHHhCCCHHHHHHHH
Q 001014 367 GSNVQFAVNPVDGEVMVIEMNPRVSRS--S--ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 367 ~~~vef~~~~~~g~~~viEiNpR~~gs--~--~l~~~atG~~l~~~~~~~ 412 (1190)
+++|||++++ +|. ||+|||||++.+ + +....++|+|+.+.+.++
T Consensus 314 ~~~vDf~~~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~l 361 (373)
T 3lwb_A 314 LARVDFFLTD-DGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATM 361 (373)
T ss_dssp EEEEEEEEET-TEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEEEEEEC-CCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 9999999997 677 999999998843 2 335678999987765544
No 84
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=100.00 E-value=5.5e-34 Score=330.53 Aligned_cols=302 Identities=21% Similarity=0.262 Sum_probs=237.1
Q ss_pred CCEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----cCcc----eEEECCCCHH-H
Q 001014 92 LRKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDP-----GLAD----RTYITPMTPE-L 158 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----~~ad----~~~i~p~~~~-~ 158 (1190)
++||+||.||. +.||| .||.+++++|++.||+|+.++.++...+... .... ...+.+...+ .
T Consensus 3 ~~~v~vl~GG~-----s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (346)
T 3se7_A 3 HMKIGIIFGGV-----SEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHG 77 (346)
T ss_dssp CEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCE
T ss_pred CCEEEEEeeec-----CCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCcc
Confidence 35899999985 89999 5799999999999999999998765422100 0000 0011110000 0
Q ss_pred HH----HHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeec
Q 001014 159 VE----QVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIG 234 (1190)
Q Consensus 159 v~----~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v 234 (1190)
+. ..+++.++|+|+|.++|..+++..+ +++|+.+|++++|+++.++..+.||..++++|+++|||+|++..+
T Consensus 78 ~~~~~~~~~~~~~~D~v~~~lhG~~gedg~i----q~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~ 153 (346)
T 3se7_A 78 LLVLEQGKYETIRLDLVLPVLHGKLGEDGAI----QGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTV 153 (346)
T ss_dssp EEEEETTEEEEEECSEEEECCCSTTTTSSHH----HHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEE
T ss_pred ceecccccccccCCCEEEEccCCCCCCChHH----HHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEE
Confidence 00 0023467999999999999999877 889999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcE
Q 001014 235 NTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNV 314 (1190)
Q Consensus 235 ~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~ 314 (1190)
++.+ ..+.+.++ ||+||||..+++|.|+.++++.+||.++++.++.. +.++|||+||+| +|+++.++.+.++ .
T Consensus 154 ~~~~--~~~~~~lg-~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G-~E~~v~vl~~~~~-~ 226 (346)
T 3se7_A 154 TADE--KIPTDQLT-YPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY--DSKVLIEEAVIG-TEIGCAVMGNGPE-L 226 (346)
T ss_dssp ETTS--CCCTTTCC-SSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT--CSEEEEEECCCS-EEEEEEEEEETTE-E
T ss_pred cCcH--HHHHHhcC-CCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC--CCcEEEEeCcCC-EEEEEEEEecCCC-e
Confidence 8765 33456789 99999999999999999999999999999988765 568999999999 9999999998543 3
Q ss_pred EEEEeeeee------C-----CCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEE
Q 001014 315 VIICSIENV------D-----PMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMV 383 (1190)
Q Consensus 315 ~~~~~~e~~------~-----~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~v 383 (1190)
.+++..+.. + ..++..+.+....|++ ++++..+++++.+.+++++||++ |++++||++++ +|++||
T Consensus 227 ~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~~~a~~~~~~lg~~-G~~~vD~~~~~-~g~~~v 303 (346)
T 3se7_A 227 ITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQDTAKAVYRALGCR-GLSRVDLFLTE-DGKVVL 303 (346)
T ss_dssp EECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHHHHHHHHHHHHTCC-EEEEEEEEECT-TSCEEE
T ss_pred EEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCc-eEEEEEEEEeC-CCCEEE
Confidence 333333322 1 1234446667788997 99999999999999999999997 99999999997 688999
Q ss_pred EEeCCCCCC--ch--HHHHHHhCCCHHHHHHHH
Q 001014 384 IEMNPRVSR--SS--ALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 384 iEiNpR~~g--s~--~l~~~atG~~l~~~~~~~ 412 (1190)
+|||||++. .+ +....++|+|+.+.+.++
T Consensus 304 lEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 304 NEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp EEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 999977664 33 445678999999877665
No 85
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=100.00 E-value=2.7e-32 Score=314.88 Aligned_cols=287 Identities=17% Similarity=0.212 Sum_probs=212.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC-C-CeEEEEccCCCCCCCCccCcceEEECC-CC----HHHHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE-G-YEVILINSNPATIMTDPGLADRTYITP-MT----PELVEQVLEK 165 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G-~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~----~~~v~~i~~~ 165 (1190)
+||||+|+|.. .++++++++. | ++|++++.++..+. ...+|..+..| .+ .+.+.+++++
T Consensus 5 ~~Ili~g~g~~------------~~l~~~l~~~~~~~~v~~~d~~~~~~~--~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 70 (331)
T 2pn1_A 5 PHLLITSAGRR------------AKLVEYFVKEFKTGRVSTADCSPLASA--LYMADQHYIVPKIDEVEYIDHLLTLCQD 70 (331)
T ss_dssp CEEEEESCTTC------------HHHHHHHHHHCCSSEEEEEESCTTCGG--GGGSSSEEECCCTTSTTHHHHHHHHHHH
T ss_pred ceEEEecCCch------------HHHHHHHHHhcCCCEEEEEeCCCcchh--HHhhhceecCCCCCChhHHHHHHHHHHH
Confidence 59999999952 2688999886 7 99999998887654 34678877666 42 5788899999
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH-
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIA- 244 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~- 244 (1190)
+++|+|+|+.++....... + .+.|+..|++++|++++++..+.||..++++|+++|+|+|++.. +.+++.++.
T Consensus 71 ~~~d~vi~~~~~~~~~~a~--~--~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~ 144 (331)
T 2pn1_A 71 EGVTALLTLIDPELGLLAQ--A--TERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA--TMASFEEALA 144 (331)
T ss_dssp HTCCEEEESSHHHHHHHHH--T--HHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHH
T ss_pred cCCCEEEeCCchhHHHHHH--H--HHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhh
Confidence 9999999987644332221 1 45678889999999999999999999999999999999999875 466776666
Q ss_pred -HHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEe-CCCcEEEEEeeee
Q 001014 245 -NEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRD-LADNVVIICSIEN 322 (1190)
Q Consensus 245 -~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d-~~g~~~~~~~~e~ 322 (1190)
++++ ||+||||..++||+|+.++++.+|+.+++.. ..+++||+||+| +|+++.++.| .+|+++.....+.
T Consensus 145 ~~~~~-~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~------~~~~lvee~i~G-~e~~v~~~~d~~~G~~~~~~~~~~ 216 (331)
T 2pn1_A 145 AGEVQ-LPVFVKPRNGSASIEVRRVETVEEVEQLFSK------NTDLIVQELLVG-QELGVDAYVDLISGKVTSIFIKEK 216 (331)
T ss_dssp TTSSC-SCEEEEESBC-----------------------------CEEEEECCCS-EEEEEEEEECTTTCCEEEEEEEEE
T ss_pred cccCC-CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh------CCCeEEEecCCC-cEEEEEEEEecCCCeEEEEEEEEE
Confidence 4789 9999999999999999999999999987754 358999999999 9999999998 6788776554443
Q ss_pred eCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhC
Q 001014 323 VDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATG 402 (1190)
Q Consensus 323 ~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG 402 (1190)
.. ...|......|. . .+++.+.+.+++++||+. |++++||+.+ +|++||+|||||++++..+ ..++|
T Consensus 217 ~~---~~~g~~~~~~~~--~----~~~~~~~~~~~~~~lg~~-G~~~vd~~~~--~g~~~~iEiN~R~~g~~~~-~~~~G 283 (331)
T 2pn1_A 217 LT---MRAGETDKSRSV--L----RDDVFELVEHVLDGSGLV-GPLDFDLFDV--AGTLYLSEINPRFGGGYPH-AYECG 283 (331)
T ss_dssp EE---EETTEEEEEEEE--C----CHHHHHHHHHHHTTTCCC-EEEEEEEEEE--TTEEEEEEEESSCCTTHHH-HHHTT
T ss_pred EE---ecCCceeEeEEe--c----cHHHHHHHHHHHHHhCCc-ceEEEEEEEc--CCCEEEEEEeCCCCCchHH-HHHcC
Confidence 32 122333222222 2 256888999999999995 9999999965 7899999999999998764 78899
Q ss_pred CCHHHHHHHHHcCCCCCC
Q 001014 403 FPIAKMAAKLSVGYSLDQ 420 (1190)
Q Consensus 403 ~~l~~~~~~~alG~~l~~ 420 (1190)
+|+++.++++++|.+++.
T Consensus 284 ~~~~~~~~~~~~g~~~~~ 301 (331)
T 2pn1_A 284 VNFPAQLYRNLMHEINVP 301 (331)
T ss_dssp CCHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHcCCCCCc
Confidence 999999999999988764
No 86
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=100.00 E-value=6e-32 Score=316.70 Aligned_cols=297 Identities=16% Similarity=0.149 Sum_probs=231.1
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHH-HhCCCeEEEecCCCCCcCccc-------------cCC-cc-----
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSL-QSAGYETIMMNSNPETVSTDY-------------DTS-DR----- 699 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al-~~~G~~vi~v~~~p~~~s~~~-------------~~a-d~----- 699 (1190)
+.||+||+||. +.|+|+| +.+++++| ++.||+++.++.+++...... .+. +.
T Consensus 3 k~~v~vl~gG~-----s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (377)
T 1ehi_A 3 KKRVALIFGGN-----SSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVD 77 (377)
T ss_dssp CEEEEEEEECS-----STTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCC
T ss_pred CcEEEEEeCCC-----CCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccccccc
Confidence 56899999864 7899996 66777999 999999999998876522110 000 00
Q ss_pred --eeecCCcHHHHHHHhhhcCCCccccccCCchh--hhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHH
Q 001014 700 --LYFEPLTVEDVLNVIDLERPEGIIVQFGGQTP--LKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERF 775 (1190)
Q Consensus 700 --~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~--~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~ 775 (1190)
.++.|.. +.. +.+++|+|++.++|... ..++..++ ..| ++++|++++++.+++||..+
T Consensus 78 ~~~~~~~~~---~~~--~~~~~D~v~~~~~g~~gedg~~~~lle----------~~g---ip~~G~~~~a~~~~~DK~~~ 139 (377)
T 1ehi_A 78 ASDPLARIH---ALK--SAGDFDIFFPVVHGNLGEDGTLQGLFK----------LLD---KPYVGAPLRGHAVSFDKALT 139 (377)
T ss_dssp TTCTTCTTG---GGG--TTCCCSEEEEECCSTTTSSSHHHHHHH----------HTT---CCBSSCCHHHHHHHHSHHHH
T ss_pred cccccCcch---hhc--cccCCCEEEEecCCCCCcCHHHHHHHH----------HcC---CCEeCcCHHHHHHHcCHHHH
Confidence 1222211 111 24689999999876632 24566677 889 99999999999999999999
Q ss_pred HHHHHHcCCCCCCceeecCHHH----HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEE
Q 001014 776 NAIIKELSIEQPKGGIAKSEAD----ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDK 851 (1190)
Q Consensus 776 ~~~l~~~gIp~p~~~~~~s~~e----~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEe 851 (1190)
+++|+++|||+|++..+.+.++ +.++++.+|||+||||..+++|+|+.+|+|.+||.++++.+... +.+++||+
T Consensus 140 k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe 217 (377)
T 1ehi_A 140 KELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--DYKVLIEE 217 (377)
T ss_dssp HHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT--CSCEEEEE
T ss_pred HHHHHHcCCCCCCEEEEeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc--CCcEEEEc
Confidence 9999999999999999988765 66677889999999999999999999999999999999886543 46899999
Q ss_pred ecCCc-ceEEEeEEecCCCcEEEEeeeeeee-----cccc-------ccc-ccccccCCCCCCHHHHHHHHHHHHHHHHH
Q 001014 852 YLSDA-IEIDVDALADSCGNVVIGGIMEHIE-----QAGV-------HSG-DSACMIPTKTISSSCLDTISSWTIKLAKR 917 (1190)
Q Consensus 852 fI~~g-~E~~v~v~~d~~G~v~~~~i~e~~~-----~~g~-------~~g-d~~~~~p~~~l~~~~~~~i~~~a~~i~~~ 917 (1190)
|| .| +|++|.++.++++ ...++.+... ..++ +.| .+....|+ .++++..+++++++.+++++
T Consensus 218 ~I-~G~~E~~v~vl~~~~~--~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~a 293 (377)
T 1ehi_A 218 AV-NGARELEVGVIGNDQP--LVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPA-QLSPEVTKEVKQMALDAYKV 293 (377)
T ss_dssp CC-CCSCEEEEEEEESSSC--EEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCceEEEEEEcCCCc--EEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence 99 67 9999999998543 3444445443 1112 223 33445566 49999999999999999999
Q ss_pred cCCCcceeEEEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 918 LNVCGLMNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 918 Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
||++|++++||+++.+|++||||||||++.+ +|...+++|+|+.+++.+++
T Consensus 294 lg~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~li 348 (377)
T 1ehi_A 294 LNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLI 348 (377)
T ss_dssp TTCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHHHH
T ss_pred cCCCcEEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999778899999999999975 35556789999977766543
No 87
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=100.00 E-value=4.2e-32 Score=313.25 Aligned_cols=287 Identities=16% Similarity=0.179 Sum_probs=214.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-C-CeEEEecCCCCCcCccccCCcceeecC-C----cHHHHHHHh
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-G-YETIMMNSNPETVSTDYDTSDRLYFEP-L----TVEDVLNVI 714 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G-~~vi~v~~~p~~~s~~~~~ad~~~~~p-~----~~e~v~~i~ 714 (1190)
.++||||+|+|.. .++++++++. | +++++++.+|..+... .+|+.|..| . ..+.+.+++
T Consensus 3 ~~~~Ili~g~g~~------------~~l~~~l~~~~~~~~v~~~d~~~~~~~~~--~~d~~~~~~~~~~~~~~~~l~~~~ 68 (331)
T 2pn1_A 3 QKPHLLITSAGRR------------AKLVEYFVKEFKTGRVSTADCSPLASALY--MADQHYIVPKIDEVEYIDHLLTLC 68 (331)
T ss_dssp TCCEEEEESCTTC------------HHHHHHHHHHCCSSEEEEEESCTTCGGGG--GSSSEEECCCTTSTTHHHHHHHHH
T ss_pred ccceEEEecCCch------------HHHHHHHHHhcCCCEEEEEeCCCcchhHH--hhhceecCCCCCChhHHHHHHHHH
Confidence 3479999999873 2457888876 7 9999999998876544 577777655 3 278999999
Q ss_pred hhcCCCccccccCCchh--hhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceee
Q 001014 715 DLERPEGIIVQFGGQTP--LKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIA 792 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~~~--~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~ 792 (1190)
+++++|+|++..+.... ..++..|+ ..| ++++|++++++.++.||..++++|+++|||+|++..
T Consensus 69 ~~~~~d~vi~~~~~~~~~~a~~~~~l~----------~~g---~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~- 134 (331)
T 2pn1_A 69 QDEGVTALLTLIDPELGLLAQATERFQ----------AIG---VTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA- 134 (331)
T ss_dssp HHHTCCEEEESSHHHHHHHHHTHHHHH----------TTT---CEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES-
T ss_pred HHcCCCEEEeCCchhHHHHHHHHHHHH----------hCC---cEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe-
Confidence 99999999987765532 24455566 779 999999999999999999999999999999999865
Q ss_pred cCHHHHHHHH--HHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEec-CCC
Q 001014 793 KSEADALAIA--KEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALAD-SCG 869 (1190)
Q Consensus 793 ~s~~e~~~~~--~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d-~~G 869 (1190)
+.+++.++. +.++||+|+||..++||+|+.+++|.+|+.++++. ..+++||+|| .|.|++|++++| .+|
T Consensus 135 -~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~------~~~~lvee~i-~G~e~~v~~~~d~~~G 206 (331)
T 2pn1_A 135 -TMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK------NTDLIVQELL-VGQELGVDAYVDLISG 206 (331)
T ss_dssp -SHHHHHHHHHTTSSCSCEEEEESBC-----------------------------CEEEEECC-CSEEEEEEEEECTTTC
T ss_pred -cHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh------CCCeEEEecC-CCcEEEEEEEEecCCC
Confidence 466776666 47899999999999999999999999999888764 3589999999 679999999998 678
Q ss_pred cEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCCh
Q 001014 870 NVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTV 949 (1190)
Q Consensus 870 ~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~ 949 (1190)
+++...+.+.... ..|......|+ . .+++.+.+.+++++||+.|++++||+. ++|++|++|+|||++++.
T Consensus 207 ~~~~~~~~~~~~~---~~g~~~~~~~~--~----~~~~~~~~~~~~~~lg~~G~~~vd~~~-~~g~~~~iEiN~R~~g~~ 276 (331)
T 2pn1_A 207 KVTSIFIKEKLTM---RAGETDKSRSV--L----RDDVFELVEHVLDGSGLVGPLDFDLFD-VAGTLYLSEINPRFGGGY 276 (331)
T ss_dssp CEEEEEEEEEEEE---ETTEEEEEEEE--C----CHHHHHHHHHHHTTTCCCEEEEEEEEE-ETTEEEEEEEESSCCTTH
T ss_pred eEEEEEEEEEEEe---cCCceeEeEEe--c----cHHHHHHHHHHHHHhCCcceEEEEEEE-cCCCEEEEEEeCCCCCch
Confidence 8876655554422 23333322222 1 267888999999999999999999997 889999999999999998
Q ss_pred hhhhcccCCCHHHHHHHHHcCCCCCC
Q 001014 950 PFVSKAIGHPLAKYAALVMSGKSLND 975 (1190)
Q Consensus 950 ~~~~~~~G~~l~~~~~~~~lG~~l~~ 975 (1190)
++ +.++|+|++++++++++|.+++.
T Consensus 277 ~~-~~~~G~~~~~~~~~~~~g~~~~~ 301 (331)
T 2pn1_A 277 PH-AYECGVNFPAQLYRNLMHEINVP 301 (331)
T ss_dssp HH-HHHTTCCHHHHHHHHHTTCCCCC
T ss_pred HH-HHHcCCCHHHHHHHHHcCCCCCc
Confidence 75 88899999999999999998864
No 88
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=100.00 E-value=7.5e-33 Score=320.85 Aligned_cols=299 Identities=19% Similarity=0.251 Sum_probs=235.7
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCCcC--ccc---cCC----cceeecCCcHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPETVS--TDY---DTS----DRLYFEPLTVEDV 710 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~~s--~~~---~~a----d~~~~~p~~~e~v 710 (1190)
++||+||+|| ++.|||+| +.+++++|++.||++++++.+++... .+. .+. +.+++.|.. +.
T Consensus 3 ~~~v~vl~gG-----~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 75 (343)
T 1e4e_A 3 RIKVAILFGG-----CSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDK--KM 75 (343)
T ss_dssp CEEEEEEEEC-----SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCT--TT
T ss_pred CcEEEEEeCC-----CCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceeccccc--cc
Confidence 5789999976 57899995 56679999999999999998876521 110 011 234444321 00
Q ss_pred HH-H------hhhcCCCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHH
Q 001014 711 LN-V------IDLERPEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKE 781 (1190)
Q Consensus 711 ~~-i------~~~~~~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~ 781 (1190)
.. + .+.+++|.|++.+++.. ...++..++ ..| ++++|++++++.+++||..++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~D~v~~~~~g~~ged~~~~~~le----------~~g---ip~~g~~~~~~~~~~dK~~~k~~l~~ 142 (343)
T 1e4e_A 76 HGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFE----------LSG---IPFVGCDIQSSAICMDKSLTYIVAKN 142 (343)
T ss_dssp CEEEEEETTEEEEEECSEEEECCCSTTTTSSHHHHHHH----------HHT---CCBSSCCHHHHHHHHSHHHHHHHHHH
T ss_pred ccceeecccccccccCCEEEEeCCCCCCcCHHHHHHHH----------HcC---CCccCCCHHHHHHHhCHHHHHHHHHH
Confidence 11 1 13467999999987653 334566666 788 99999999999999999999999999
Q ss_pred cCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEE
Q 001014 782 LSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDV 861 (1190)
Q Consensus 782 ~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v 861 (1190)
+|||+|++..+.+.+++.. +.++||+||||..+++|+|+.+|++.+||.++++.+.. .+.+++||+|| .|+|++|
T Consensus 143 ~Gip~p~~~~~~~~~~~~~--~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~--~~~~~lvEe~I-~G~E~~v 217 (343)
T 1e4e_A 143 AGIATPAFWVINKDDRPVA--ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ--YDSKILIEQAV-SGCEVGC 217 (343)
T ss_dssp TTCBCCCEEEECTTCCCCG--GGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT--TCSSEEEEECC-CSEEEEE
T ss_pred CCCCcCCEEEEechhhhhh--hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCcEEEEeCc-CCeEEEE
Confidence 9999999999988766532 67899999999999999999999999999999988654 35689999999 6999999
Q ss_pred eEEecCCCcEEEEeeeeeee-------ccccc----ccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEE
Q 001014 862 DALADSCGNVVIGGIMEHIE-------QAGVH----SGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAI 930 (1190)
Q Consensus 862 ~v~~d~~G~v~~~~i~e~~~-------~~g~~----~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~ 930 (1190)
.++.++.+ +...++.+... ..+.+ .|.+....|+ .++++..+++++++.+++++||++|++++||++
T Consensus 218 ~vl~~~~~-~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 295 (343)
T 1e4e_A 218 AVLGNSAA-LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA-DLSAEERGRIQETVKKIYKTLGCRGLARVDMFL 295 (343)
T ss_dssp EEEEETTC-CEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSC-SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEeCCCC-eEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 99998654 55555555432 12233 4555555666 499999999999999999999999999999999
Q ss_pred ecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 931 TTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 931 d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+++|++||||||||++++ +|...+++|+|+.+++.+++
T Consensus 296 ~~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 296 QDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred eCCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 878999999999999986 46667888999999988765
No 89
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=100.00 E-value=8.1e-32 Score=307.22 Aligned_cols=279 Identities=18% Similarity=0.293 Sum_probs=229.5
Q ss_pred CCEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~ 168 (1190)
++||+|+|+|. +.|+|+ ++.+++++|+++|++|++++.+.. .. .. +...++
T Consensus 2 ~~~i~il~gg~-----s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~-~~--~~------------------~~~~~~ 55 (306)
T 1iow_A 2 TDKIAVLLGGT-----SAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV-DV--TQ------------------LKSMGF 55 (306)
T ss_dssp CCEEEEECCCS-----STTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS-CG--GG------------------TTTTTE
T ss_pred CcEEEEEeCCC-----CccceEcHHhHHHHHHHHHHCCCeEEEEecCch-HH--HH------------------hhccCC
Confidence 36899999984 789998 889999999999999999987632 11 00 123578
Q ss_pred CEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHH------
Q 001014 169 DALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECIS------ 242 (1190)
Q Consensus 169 d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~------ 242 (1190)
|+|++..++..+++..+ +++++..|++++|++++++..+.||..++++|+++|+|+|++..+++. ++.+
T Consensus 56 d~v~~~~~~~~~e~~~~----~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~ 130 (306)
T 1iow_A 56 QKVFIALHGRGGEDGTL----QGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQ 130 (306)
T ss_dssp EEEEECCCSTTTSSSHH----HHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHH
T ss_pred CEEEEcCCCCCCcchHH----HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhh
Confidence 99999987665555433 457888999999999999999999999999999999999999998887 6666
Q ss_pred --HHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEee
Q 001014 243 --IANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSI 320 (1190)
Q Consensus 243 --~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~ 320 (1190)
+.++++ ||+||||..+++|.|+.++++.+|+.++++.+... ...++||+||+| +|+++.++ +|.++. ..
T Consensus 131 ~~~~~~~~-~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i~g-~e~~v~~~---~g~~~~--~~ 201 (306)
T 1iow_A 131 LAEISALG-LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH--DEEVLIEKWLSG-PEFTVAIL---GEEILP--SI 201 (306)
T ss_dssp HHHHHTTC-SSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT--CSEEEEEECCCC-CEEEEEEE---TTEECC--CE
T ss_pred hhHHhccC-CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--CCCEEEEeCcCC-EEEEEEEE---CCCccc--eE
Confidence 677899 99999999999999999999999999999877643 568999999999 99999998 234322 22
Q ss_pred eeeCCC-------CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 321 ENVDPM-------GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 321 e~~~~~-------g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
+..... +++.|......|+. ++++..+++++.+.+++++||+. |++++||++++ +|++||+|||||++++
T Consensus 202 ~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~-G~~~vD~~~~~-~g~~~~iEiN~rpg~~ 278 (306)
T 1iow_A 202 RIQPSGTFYDYEAKFLSDETQYFCPAG-LEASQEANLQALVLKAWTTLGCK-GWGRIDVMLDS-DGQFYLLEANTSPGMT 278 (306)
T ss_dssp EEECSSSSSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEECT-TSCEEEEEEESSCCCS
T ss_pred EEEeCCCeEchhheecCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHcCCc-eEEEEEEEEcC-CCCEEEEEecCCCCCC
Confidence 222111 23356677788987 99999999999999999999995 99999999997 7889999999999885
Q ss_pred h----HHHHHHhCCCHHHHHHHHH
Q 001014 394 S----ALASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 394 ~----~l~~~atG~~l~~~~~~~a 413 (1190)
. +....++|+|+.+.+.++.
T Consensus 279 ~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 279 SHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp TTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHH
Confidence 3 3456789999999988864
No 90
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=100.00 E-value=2.9e-32 Score=318.40 Aligned_cols=301 Identities=15% Similarity=0.204 Sum_probs=230.1
Q ss_pred CcEEEEECCCCcccCCCcccchhH---HHHHHHHHhCCCeEEEecCCCCCcCccccC-------Ccceee-cCCcHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCC---CHTSFSLQSAGYETIMMNSNPETVSTDYDT-------SDRLYF-EPLTVEDVL 711 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~---~~~~~al~~~G~~vi~v~~~p~~~s~~~~~-------ad~~~~-~p~~~e~v~ 711 (1190)
++||+||+|| ++.|+|+|. ..++++|++.||+++.++.+++.....++. .+.+++ +|.+.+ +.
T Consensus 3 ~~~v~vl~gg-----~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (364)
T 2i87_A 3 KENICIVFGG-----KSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALE-IS 76 (364)
T ss_dssp CEEEEEEEEC-----SSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEEC-SS
T ss_pred CcEEEEEECC-----CCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccccccccc-cc
Confidence 5789999975 478999875 666899999999999999887653221110 122222 232211 01
Q ss_pred HHh----hhcCCCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 712 NVI----DLERPEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 712 ~i~----~~~~~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
.++ +.+++|.|++.+.|.. ...++..++ ..| ++++|++++++.++.||..++++|+++|||
T Consensus 77 ~~~~~~~~~~~~D~v~~~~~g~~~ed~~~~~~le----------~~g---ip~~g~~~~~~~~~~dK~~~k~~l~~~Gip 143 (364)
T 2i87_A 77 QLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFE----------VLD---VPYVGNGVLSAASSMDKLVMKQLFEHRGLP 143 (364)
T ss_dssp GGGGBCTTSSBCSEEEEECCCSSSCTTHHHHHHH----------HHT---CCBSSCCHHHHHHHHSHHHHHHHHHHHTCC
T ss_pred ccccccccccCCCEEEEeCCCCCCcCHHHHHHHH----------HcC---CCccCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence 122 4567999999886542 234566666 789 999999999999999999999999999999
Q ss_pred CCCceeecCHH-------HHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcce
Q 001014 786 QPKGGIAKSEA-------DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIE 858 (1190)
Q Consensus 786 ~p~~~~~~s~~-------e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E 858 (1190)
+|++..+.+.+ ++.++++++|||+||||..+++|+||.+|++.++|..+++.+.. .+.+++||+|| .|+|
T Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~--~~~~~lvEe~I-~G~E 220 (364)
T 2i87_A 144 QLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ--FDRKLVIEQGV-NARE 220 (364)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT--TCSEEEEEECC-CCEE
T ss_pred CCCEEEEechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCeEEEEeCc-cCeE
Confidence 99999988775 46667788999999999999999999999999999999988654 35689999999 6899
Q ss_pred EEEeEEecCCCcEEEEeeeeeee-------cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe
Q 001014 859 IDVDALADSCGNVVIGGIMEHIE-------QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT 931 (1190)
Q Consensus 859 ~~v~v~~d~~G~v~~~~i~e~~~-------~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d 931 (1190)
++|.++.++++ ...++.+... ....+.|.+....|+ .++++..+++++++.+++++||++|++++||+++
T Consensus 221 ~~v~vl~~~~~--~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 297 (364)
T 2i87_A 221 IEVAVLGNDYP--EATWPGEVVKDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATDCSGLVRADFFVT 297 (364)
T ss_dssp EEEEEEESSSC--EECCCEEECCSCCC-----------CCEESSC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEEcCCCc--EEeeeEEEecCCCcCCHHHcccCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 99999998543 2223333321 111233444445566 4999999999999999999999999999999997
Q ss_pred cCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 932 TSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 932 ~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
++|++||+|||||++++ +|...+++|+|+.+++.+++
T Consensus 298 ~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 338 (364)
T 2i87_A 298 EDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLI 338 (364)
T ss_dssp TTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHHH
Confidence 78899999999999985 35566789999988876654
No 91
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=1.1e-32 Score=320.52 Aligned_cols=293 Identities=17% Similarity=0.179 Sum_probs=231.9
Q ss_pred CEEEEEcCCccccccccccch---HHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHH---------
Q 001014 93 RKILILGAGPIVIGQACEFDY---SGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVE--------- 160 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~---sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~--------- 160 (1190)
+||+||+|| ++.|||+ ||.+++++|+ ||+|+.++.+++....... .+ ..+...+.
T Consensus 21 ~~v~vl~gG-----~s~E~~vSl~S~~~v~~al~--g~~v~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~ 87 (367)
T 2pvp_A 21 MEFCVLFGG-----ASFEHEISIVSAIALKGVLK--DRIKYFIFLDENHHFYLIE-ES-----NMHSKYFAQIKEKKLPP 87 (367)
T ss_dssp CCEEEEEEC-----SSTTHHHHHHHHHHHHHHHG--GGEEEEEEECTTCCEEECC-GG-----GCSHHHHHTGGGSCCCC
T ss_pred CEEEEEECC-----CCcchhhhHHHHHHHHHHhC--CCeEEEEEECCCCCEEecc-cc-----ccchhhhcccccccccc
Confidence 489999997 5999997 5899999999 9999999987753210000 00 00111110
Q ss_pred ------HHH-----HHc--CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 161 ------QVL-----EKE--RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 161 ------~i~-----~~~--~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
.+. ... ++|+|+|.++|+.+++..+ +++++.+|++++|++..++.++.||..++++|+++|||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~D~v~~~lhg~~gedg~i----~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip 163 (367)
T 2pvp_A 88 LILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKL----ASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIK 163 (367)
T ss_dssp BEEETTEEEEEETTEEEEEECCSEEECCCSTTTTSSHH----HHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCB
T ss_pred ccccCcceeccccccccccCCCEEEEcCCCCCccHHHH----HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcC
Confidence 011 123 7999999999999998876 78899999999999999999999999999999999999
Q ss_pred CCCeeecCCHH--HHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeee-E
Q 001014 228 TPPSGIGNTLD--ECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYE-L 304 (1190)
Q Consensus 228 vp~~~~v~s~~--e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~s-v 304 (1190)
+|++..+.+.+ ++.+ .+.+| ||+||||..+++|.|+.+|++.+||.++++.++.. +.+++||+||+|++|++ +
T Consensus 164 ~p~~~~~~~~~~~~~~~-~~~lg-~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~--~~~vlVEe~I~G~~E~svi 239 (367)
T 2pvp_A 164 TLDYVLLNEKNRANALD-LMNFN-FPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY--SKEVLIEPFIQGVKEYNLA 239 (367)
T ss_dssp CCCCEEECTTTGGGHHH-HCCSC-SCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT--CSCEEEEECCTTCEEEEEE
T ss_pred CCCEEEEeCCchHHHHH-HhccC-CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeCCCCCceeeEE
Confidence 99999998876 6666 67899 99999999999999999999999999999987664 56899999999988977 5
Q ss_pred EEEEeCCCcEEEEEeeeee------CC-CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecC
Q 001014 305 EVMRDLADNVVIICSIENV------DP-MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPV 377 (1190)
Q Consensus 305 ~v~~d~~g~~~~~~~~e~~------~~-~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~ 377 (1190)
++.. +|+.++... +.. +. .++++|.+....|+. ++++..+++++++.+++++||+. |++++||+++
T Consensus 240 ~v~v--~g~~~~~~~-ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G~~~vDf~~~-- 312 (367)
T 2pvp_A 240 GCKI--KKDFCFSYI-EEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDG-AIIRCDFFVI-- 312 (367)
T ss_dssp EEEE--TTEEEEEEE-EETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHHHHHHTTTSTT-CCEEEEEEEE--
T ss_pred EEEE--CCEEEEEEE-EEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCC-CEEEEEEEEE--
Confidence 5554 455444433 322 22 245566666778997 99999999999999999999995 9999999999
Q ss_pred CCcEEEEEeCCCCCCchH-HHHHHhCCCHHHHHHHHHcCCCC
Q 001014 378 DGEVMVIEMNPRVSRSSA-LASKATGFPIAKMAAKLSVGYSL 418 (1190)
Q Consensus 378 ~g~~~viEiNpR~~gs~~-l~~~atG~~l~~~~~~~alG~~l 418 (1190)
+|++||+|||||++++.. +.. ++.+.+.++..+.++
T Consensus 313 ~g~~~vlEiN~rpg~t~~s~~p-----~~~~l~~~li~~~~~ 349 (367)
T 2pvp_A 313 ENEVYLNEINPIPGSLANYLFD-----DFKTTLENLAQSLPK 349 (367)
T ss_dssp TTEEEEEEEESSCGGGGGGGSS-----SHHHHHHHHHHHCC-
T ss_pred CCeEEEEEEeCCCCCCcccccC-----CHHHHHHHHHhCccc
Confidence 789999999999987531 111 788888887766544
No 92
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=100.00 E-value=8.4e-32 Score=307.34 Aligned_cols=278 Identities=21% Similarity=0.299 Sum_probs=224.3
Q ss_pred CEEEEEcCCccccccccccc---hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFD---YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d---~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
+||+|+.||. +.|+| +|+.+++++|++.||+|+.++.+.... . +.+..++|
T Consensus 4 m~v~vl~gg~-----s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~------------------~---~~~~~~~D 57 (307)
T 3r5x_A 4 MRIGVIMGGV-----SSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMD------------------L---IEKAKDID 57 (307)
T ss_dssp EEEEEEECCS-----HHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGG------------------H---HHHTTTCS
T ss_pred cEEEEEeCCC-----CcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchh------------------H---HHhccCCC
Confidence 5899999985 78999 679999999999999999998642110 0 12235899
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHH-HHHHcC
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECIS-IANEIG 248 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~-~~~~ig 248 (1190)
+|++..++..+++..+ +++++.+|++++|++++++..+.||..++++|+++|||+|++..+.+.+++.. +.+.++
T Consensus 58 ~v~~~~~~~~ge~~~~----~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 133 (307)
T 3r5x_A 58 FALLALHGKYGEDGTV----QGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLG 133 (307)
T ss_dssp EEEECCCSHHHHSSHH----HHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHHC
T ss_pred EEEEeCCCCCCcHHHH----HHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhcC
Confidence 9999999988877665 67899999999999999999999999999999999999999999988776654 677899
Q ss_pred CCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE----EeeeeeC
Q 001014 249 EFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENVD 324 (1190)
Q Consensus 249 ~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~----~~~e~~~ 324 (1190)
||+||||..++||.|+.++++.+|+.++++.+... ..+++||+||+| +|+++.++. |+++.+ +..+.++
T Consensus 134 -~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i~G-~e~~v~v~~---g~~~~~~~~~~~~~~~~ 206 (307)
T 3r5x_A 134 -FPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKG-EEITCSIFD---GKQLPIISIRHAAEFFD 206 (307)
T ss_dssp -SSEEEEECC----CCCEEECSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEEEEEEET---TEECCCEEEEEEEEEET
T ss_pred -CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEECCcCC-EEEEEEEEC---CEEeeEEEEEcCCcccC
Confidence 99999999999999999999999999999988766 468999999999 999999862 344222 2222223
Q ss_pred CC-CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCc----hHHHHH
Q 001014 325 PM-GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS----SALASK 399 (1190)
Q Consensus 325 ~~-g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs----~~l~~~ 399 (1190)
.. ++.++..... |+. ++++..+++++.+.+++++||++ |++++||+++ +|++||+|||||++.+ .+....
T Consensus 207 ~~~~~~~~g~~~~-p~~-l~~~~~~~i~~~a~~~~~~lg~~-G~~~vD~~~~--~g~~~vlEiN~rpg~~~~s~~~~~~~ 281 (307)
T 3r5x_A 207 YNAKYDDASTIEE-VIE-LPAELKERVNKASLACYKALKCS-VYARVDMMVK--DGIPYVMEVNTLPGMTQASLLPKSAD 281 (307)
T ss_dssp TEEEEEEEEEEEE-ECC-CCHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEEE--TTEEEEEEEESSCCCSTTSHHHHHHH
T ss_pred hhhcCCCCCCeEe-cCC-CCHHHHHHHHHHHHHHHHHhCCC-ceEEEEEEEE--CCeEEEEEEcCCCCCCccCHHHHHHH
Confidence 21 2212333333 886 99999999999999999999997 9999999999 6899999999998854 244578
Q ss_pred HhCCCHHHHHHHH
Q 001014 400 ATGFPIAKMAAKL 412 (1190)
Q Consensus 400 atG~~l~~~~~~~ 412 (1190)
++|+|+.+.+.++
T Consensus 282 ~~G~~~~~li~~l 294 (307)
T 3r5x_A 282 AAGIHYSKLLDMI 294 (307)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 8999998877665
No 93
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.98 E-value=4.4e-31 Score=302.59 Aligned_cols=287 Identities=17% Similarity=0.196 Sum_probs=222.9
Q ss_pred CCCCcEEEEECCCCcccCCCcccch---hHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhh
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDY---CCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDL 716 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~---~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~ 716 (1190)
+..++||+||.||. +-|+|. ++.+++++|++.||+++.++.+... .+ .++.
T Consensus 10 ~~~~~~v~vl~gg~-----s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~-----------------~~----~l~~ 63 (317)
T 4eg0_A 10 PKRFGKVAVLFGGE-----SAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP-----------------LS----ALKD 63 (317)
T ss_dssp GGGGCEEEEECCCS-----STTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSC-----------------TT----HHHH
T ss_pred hhhcceEEEEECCC-----CCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCch-----------------HH----Hhhh
Confidence 44568999999866 568888 5889999999999999999854320 00 1234
Q ss_pred cCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecC
Q 001014 717 ERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKS 794 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s 794 (1190)
.++|.|++...+. ....++..++ ..| ++++|++++++.++.||..++++|+++|||+|++..+.+
T Consensus 64 ~~~D~v~~~~hg~~ge~~~~~~~le----------~~g---ip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~ 130 (317)
T 4eg0_A 64 EGFVRAFNALHGGYGENGQIQGALD----------FYG---IRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMR 130 (317)
T ss_dssp TTCCEEEECCCSGGGTSSHHHHHHH----------HHT---CEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEET
T ss_pred cCCCEEEEcCCCCCCchHHHHHHHH----------HcC---CCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEEC
Confidence 6899998877765 2335566666 889 999999999999999999999999999999999999998
Q ss_pred HHHHHHHH----HHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCc
Q 001014 795 EADALAIA----KEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGN 870 (1190)
Q Consensus 795 ~~e~~~~~----~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~ 870 (1190)
.+++.+++ +.+|||+||||..+++|+|+.+++|.+|+.++++.+... ..+++||+||+.|+|++|.++.|..+.
T Consensus 131 ~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~i~~G~E~~v~vl~~~~~~ 208 (317)
T 4eg0_A 131 GDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH--DKIVIVEKSIEGGGEYTACIAGDLDLP 208 (317)
T ss_dssp TSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCSSEEEEEEEETTCCCC
T ss_pred chhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCCCcEEEEEEECCcccc
Confidence 88877777 889999999999999999999999999999999876533 568999999944999999999875433
Q ss_pred EEEEeeeeee-e-cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC
Q 001014 871 VVIGGIMEHI-E-QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT 948 (1190)
Q Consensus 871 v~~~~i~e~~-~-~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s 948 (1190)
+........+ . ....+.|......|+ .++++..+++++.+.+++++||++|++++||+++.+|++||+|||||++-+
T Consensus 209 ~~~i~~~~~~~~~~~k~~~g~~~~~~P~-~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg~t 287 (317)
T 4eg0_A 209 LIKIVPAGEFYDYHAKYVANDTQYLIPC-GLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGMT 287 (317)
T ss_dssp CEEEEC---------------CEEESSC-SSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred eEEEeeCCceechhhcccCCCeeEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCC
Confidence 3322211111 1 112233444445566 589999999999999999999999999999999778999999999999854
Q ss_pred ----hhhhhcccCCCHHHHHHHHH
Q 001014 949 ----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 949 ----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+|...+++|+|+.+++.+++
T Consensus 288 ~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 288 DHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp TTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHH
Confidence 55667889999999988875
No 94
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.97 E-value=1.4e-30 Score=312.74 Aligned_cols=278 Identities=17% Similarity=0.290 Sum_probs=225.1
Q ss_pred CCeEEEecCCCC-CcCccccCCcceeecC--------CcHHHHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCC
Q 001014 677 GYETIMMNSNPE-TVSTDYDTSDRLYFEP--------LTVEDVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRL 747 (1190)
Q Consensus 677 G~~vi~v~~~p~-~~s~~~~~ad~~~~~p--------~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~ 747 (1190)
.+.|.+++..+. ........+|+.|+.+ ..++.++++++++++|+|++..+.. ...++..++
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~sE~~-l~~~a~~~e-------- 122 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTNNELF-IAPMAKACE-------- 122 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEESCGGG-HHHHHHHHH--------
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEECCccc-HHHHHHHHH--------
Confidence 455555554433 2223455788887642 1257899999999999999844332 235777777
Q ss_pred cccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCC
Q 001014 748 PSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYT 827 (1190)
Q Consensus 748 l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~ 827 (1190)
+.| ++ |++++++.++.||..++++|+++|||+|++..+.+.+++.++++++|||+||||..++||+|+.+++|
T Consensus 123 --~~G---i~--g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~ 195 (474)
T 3vmm_A 123 --RLG---LR--GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITD 195 (474)
T ss_dssp --HTT---CC--CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECC
T ss_pred --HcC---CC--CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECC
Confidence 888 76 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhh----------CCCCcEEEEEecCCcce------------EEEeEEecCCCcEEEEeeeeeeecccc
Q 001014 828 DETLVTYLENAVEV----------DPERPVLIDKYLSDAIE------------IDVDALADSCGNVVIGGIMEHIEQAGV 885 (1190)
Q Consensus 828 ~~el~~~~~~~~~~----------~~~~~vliEefI~~g~E------------~~v~v~~d~~G~v~~~~i~e~~~~~g~ 885 (1190)
.+|+.++++.+... ....+++||+|| .|.| ++++++.. +|+.....+.+.....+
T Consensus 196 ~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I-~G~e~~~~q~~~~~~e~sv~~v~~-dg~~~~v~i~~~~~~~~- 272 (474)
T 3vmm_A 196 TETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFL-QGEYGDWYQTEGYSDYISIEGIMA-DGEYFPIAIHDKTPQIG- 272 (474)
T ss_dssp TTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECC-CBCHHHHCSSSSSCSEEEEEEEEE-TTEEEEEEEEEECCCBT-
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCC-CCceeeeeecccccceeEEEEEEE-CCeEEEEEEEeeccCCC-
Confidence 99999999876442 224789999999 5655 88986654 35666555555543222
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcce-eEEEEEecCCCEEEEEEccCCCC--ChhhhhcccCCCHHH
Q 001014 886 HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLM-NCQYAITTSGDVYLLEANPRASR--TVPFVSKAIGHPLAK 962 (1190)
Q Consensus 886 ~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~-~ief~~d~~g~~~viEiNpR~~~--s~~~~~~~~G~~l~~ 962 (1190)
.++.....|+ .++++..+++++.+.++++++|++|.+ |+||+++.+|++||||+|||++| .++++++++|+|+++
T Consensus 273 -~~~~~~~~Pa-~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~ 350 (474)
T 3vmm_A 273 -FTETSHITPS-ILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQ 350 (474)
T ss_dssp -TBCCEEEESC-CCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHH
T ss_pred -ccceEEEECC-CCCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHH
Confidence 3445555677 699999999999999999999999888 79999987888999999999996 478889999999999
Q ss_pred HHHHHHc-CCCCCC
Q 001014 963 YAALVMS-GKSLND 975 (1190)
Q Consensus 963 ~~~~~~l-G~~l~~ 975 (1190)
+++++++ |++++.
T Consensus 351 ~~i~~a~~G~~l~~ 364 (474)
T 3vmm_A 351 LLLDVLCFGKDADL 364 (474)
T ss_dssp HHHHHHHHGGGSCC
T ss_pred HHHHHHcCCCCCCC
Confidence 9999999 998864
No 95
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.97 E-value=2.5e-30 Score=300.85 Aligned_cols=303 Identities=13% Similarity=0.111 Sum_probs=223.8
Q ss_pred CCcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHH------
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLN------ 712 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~------ 712 (1190)
.+.||.||=||. +-|++-| +..++++|++.||+++.++.+++..-...+..+..+........+..
T Consensus 3 ~~~~v~vl~GG~-----S~E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (372)
T 3tqt_A 3 EKLHISVLCGGQ-----STEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDHLVKEGSARPIT 77 (372)
T ss_dssp CSEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECCHHHHHHSCHHHHHHHTCSEEEE
T ss_pred CCCEEEEEeccC-----CCccHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEeccchhhhhcccccccccccccccee
Confidence 456888887765 5677776 55667788889999999987755311100000100000000000000
Q ss_pred H--------------hh-hcCCCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHH
Q 001014 713 V--------------ID-LERPEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERF 775 (1190)
Q Consensus 713 i--------------~~-~~~~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~ 775 (1190)
+ .. ..++|.|++...|.. ...++..|+ ..| ++++|+++.++.+++||..+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle----------~~g---ipy~G~~~~a~~~~~DK~~~ 144 (372)
T 3tqt_A 78 IAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLE----------LLN---LPYVGANVQSSAVCMEKDLT 144 (372)
T ss_dssp ECTTCSSCCEEEC----CEECCSEEEECCCSTTTTSSHHHHHHH----------HTT---CCBSSCCHHHHHHHHSHHHH
T ss_pred ecccccccceeeccccccccCCCEEEEcCCCCCCcCHHHHHHHH----------HcC---CCeeCcCHHHHHHHhCHHHH
Confidence 0 00 157999999887763 335777777 889 99999999999999999999
Q ss_pred HHHHHHcCCCCCCceeecCHHH----HHHHHHHhCCc-EEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEE
Q 001014 776 NAIIKELSIEQPKGGIAKSEAD----ALAIAKEIGYP-VVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLID 850 (1190)
Q Consensus 776 ~~~l~~~gIp~p~~~~~~s~~e----~~~~~~~igyP-vvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliE 850 (1190)
+++|+++|||+|++..+.+.++ +.++.+.+||| +||||..+++|.||.+|+|.+||.++++.+... +.+++||
T Consensus 145 k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVE 222 (372)
T 3tqt_A 145 KTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY--DDRLMVE 222 (372)
T ss_dssp HHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT--CSCEEEE
T ss_pred HHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEE
Confidence 9999999999999999887664 45677889999 999999999999999999999999999886543 5689999
Q ss_pred EecCCcceEEEeEEecCCCcEEEEeeeeeeec-------ccccccc-cccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 001014 851 KYLSDAIEIDVDALADSCGNVVIGGIMEHIEQ-------AGVHSGD-SACMIPTKTISSSCLDTISSWTIKLAKRLNVCG 922 (1190)
Q Consensus 851 efI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~-------~g~~~gd-~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G 922 (1190)
+|| .|+|++|.++.++ .+...++.+.... ...+.|. +....|+ .++++..+++++++.+++++||++|
T Consensus 223 e~I-~G~E~~v~vl~~~--~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G 298 (372)
T 3tqt_A 223 PRI-RGREIECAVLGNG--APKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSV-DLSESVTKQIQQIAIDAFKMVHCSG 298 (372)
T ss_dssp ECC-CSEEEEEEEEESS--SCEECCCEEEECC---------------CEEESCC-CCCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCC-CCEEEEEEEEeCC--CceEeeeEEEecCCCccchhhcccCCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcc
Confidence 999 6999999999874 3444444443321 1123344 4455566 5999999999999999999999999
Q ss_pred ceeEEEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 923 LMNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 923 ~~~ief~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
++++||+++.+|++||+|||||++-+ +|...+++|+|+.+++.+++
T Consensus 299 ~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li 348 (372)
T 3tqt_A 299 MARVDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLI 348 (372)
T ss_dssp EEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEeCCCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999778899999999999853 66678899999999887664
No 96
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.97 E-value=6.8e-31 Score=304.57 Aligned_cols=302 Identities=19% Similarity=0.220 Sum_probs=228.4
Q ss_pred CCcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCCcCccccCCccee---------ecCCc-HH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLY---------FEPLT-VE 708 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~---------~~p~~-~e 708 (1190)
.++||.||-||. +-|++-| +..++++|++.||+++.++.+++..-...+..+..+ ..+.. ..
T Consensus 2 ~~~~v~vl~GG~-----s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (346)
T 3se7_A 2 SHMKIGIIFGGV-----SEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVH 76 (346)
T ss_dssp CCEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTC
T ss_pred CCCEEEEEeeec-----CCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCc
Confidence 457899998776 4577765 667788899999999999987553110000000000 00000 00
Q ss_pred HHH----HHhhhcCCCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHc
Q 001014 709 DVL----NVIDLERPEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKEL 782 (1190)
Q Consensus 709 ~v~----~i~~~~~~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~ 782 (1190)
.+. ...+.+++|.|++...|.. ...++..++ ..| ++++|+++.++.++.||..++++|+++
T Consensus 77 ~~~~~~~~~~~~~~~D~v~~~lhG~~gedg~iq~~le----------~~g---ip~~g~~~~a~~~~~dK~~~k~~l~~~ 143 (346)
T 3se7_A 77 GLLVLEQGKYETIRLDLVLPVLHGKLGEDGAIQGLLE----------LSG---IPYVGCDIQSSALCMDKSLTYLVARSA 143 (346)
T ss_dssp EEEEEETTEEEEEECSEEEECCCSTTTTSSHHHHHHH----------HHC---CCBSSCCHHHHHHHHSHHHHHHHHHHT
T ss_pred cceecccccccccCCCEEEEccCCCCCCChHHHHHHH----------HcC---CCeeCcCHHHHHHHhCHHHHHHHHHHc
Confidence 000 0134567999999887663 335666777 889 999999999999999999999999999
Q ss_pred CCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEe
Q 001014 783 SIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVD 862 (1190)
Q Consensus 783 gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~ 862 (1190)
|||+|++..+.+.+ ..+.+.++||+||||..+++|.|+.++++.+||.++++.+... +.+++||+|| .|+|++|.
T Consensus 144 Gip~p~~~~~~~~~--~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I-~G~E~~v~ 218 (346)
T 3se7_A 144 GIATPNFWTVTADE--KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY--DSKVLIEEAV-IGTEIGCA 218 (346)
T ss_dssp TCBCCCEEEEETTS--CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT--CSEEEEEECC-CSEEEEEE
T ss_pred CcCcCCEEEEcCcH--HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC--CCcEEEEeCc-CCEEEEEE
Confidence 99999999988766 3345679999999999999999999999999999999886543 5689999999 69999999
Q ss_pred EEecCCCcEEEEeeeeeee-----------cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEe
Q 001014 863 ALADSCGNVVIGGIMEHIE-----------QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAIT 931 (1190)
Q Consensus 863 v~~d~~G~v~~~~i~e~~~-----------~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d 931 (1190)
++.++. ...+.++.+... ....+.+.+....|+ .++++..+++++.+.+++++||++|++++||+++
T Consensus 219 vl~~~~-~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~ 296 (346)
T 3se7_A 219 VMGNGP-ELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPA-DISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLT 296 (346)
T ss_dssp EEEETT-EEEECCCEEECCC--------------CGGGSCEESSC-CCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred EEecCC-CeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 999854 445555555332 122233334444566 5999999999999999999999999999999998
Q ss_pred cCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 932 TSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 932 ~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
.+|++|++|||||++.+ ++...+++|+|+.+++.+++
T Consensus 297 ~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~li 337 (346)
T 3se7_A 297 EDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRLV 337 (346)
T ss_dssp TTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 78889999999998863 55567889999999887664
No 97
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.97 E-value=9.6e-30 Score=296.81 Aligned_cols=298 Identities=18% Similarity=0.229 Sum_probs=221.9
Q ss_pred CCcEEEEECCCCcccCCCcccc---hhHHHHHHHHHhCCCeEEEecCCCCCcC-ccccCCcce----eecC---------
Q 001014 642 QKKKVLILGGGPNRIGQGIEFD---YCCCHTSFSLQSAGYETIMMNSNPETVS-TDYDTSDRL----YFEP--------- 704 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd---~~~~~~~~al~~~G~~vi~v~~~p~~~s-~~~~~ad~~----~~~p--------- 704 (1190)
.++||+||=||. +-|.+ .|+.+++++|++.||+++.++.+++..- ......+.. .+..
T Consensus 36 ~~~~v~vl~GG~-----S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (383)
T 3k3p_A 36 SKETLVLLYGGR-----SAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQK 110 (383)
T ss_dssp -CEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGE
T ss_pred cCCeEEEEeCCC-----CCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccc
Confidence 356899998776 56777 5688888999999999999997754211 000000000 0000
Q ss_pred CcHHHHHHHhhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHc
Q 001014 705 LTVEDVLNVIDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKEL 782 (1190)
Q Consensus 705 ~~~e~v~~i~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~ 782 (1190)
..... ++ .++|.|++...|. +...++..|+ ..| ++++|+++.++.++.||..++++|+++
T Consensus 111 ~~~~~---~~--~~~D~vf~~lhG~~GEdg~iq~lle----------~~g---ipy~G~~~~a~~~~~DK~~~k~~l~~~ 172 (383)
T 3k3p_A 111 IKPSD---IY--EEEAVVFPVLHGPMGEDGSIQGFLE----------VLK---MPYVGTNILSSSVAMDKITTNQVLESA 172 (383)
T ss_dssp ECGGG---GC--CTTCEEEEECCSTTTSSSHHHHHHH----------HTT---CCBSSCCHHHHHHHHCHHHHHHHHHHH
T ss_pred ccccc---cc--cCCCEEEEcCCCCCcchHHHHHHHH----------HcC---CCccCCCHHHHHHHhCHHHHHHHHHhC
Confidence 00111 11 3789999888766 3335677777 889 999999999999999999999999999
Q ss_pred C-CCCCCceeecCH----HHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcc
Q 001014 783 S-IEQPKGGIAKSE----ADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAI 857 (1190)
Q Consensus 783 g-Ip~p~~~~~~s~----~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~ 857 (1190)
| ||+|++..+.+. +++.++.+.+|||+||||..+++|.|+.+|+|.+||.++++.++.. +.+++||+|| .|+
T Consensus 173 G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~--~~~vlVEe~I-~G~ 249 (383)
T 3k3p_A 173 TTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY--DSRVLIEQGV-DAR 249 (383)
T ss_dssp CCCCBCCEEEEETTSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH--CSEEEEEECC-CSE
T ss_pred CCcCCCCEEEEeCccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCC-CCe
Confidence 9 999999988876 4677788899999999999999999999999999999999987654 4689999999 699
Q ss_pred eEEEeEEecCCCcEEEEeeeeeeecccc-------cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEE
Q 001014 858 EIDVDALADSCGNVVIGGIMEHIEQAGV-------HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAI 930 (1190)
Q Consensus 858 E~~v~v~~d~~G~v~~~~i~e~~~~~g~-------~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~ 930 (1190)
|++|.++.|+ .....++.|.....+. ..+......|+ .++++..+++++.+.+++++||++|++++||++
T Consensus 250 E~~v~vl~d~--~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~ 326 (383)
T 3k3p_A 250 EIEVGILGNT--DVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPA-EIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFL 326 (383)
T ss_dssp EEEEEEEESS--SCEECCCEEEC-----------------CEESSC-CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEEEEEEeCC--CeeEEeeEEEecCCCccchhhcccCCCeeEEecC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 9999999874 4444444443322221 23334445566 599999999999999999999999999999999
Q ss_pred ecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 931 TTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 931 d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+.+|++||+|||||++-+ +|...+++|+|+.++..+++
T Consensus 327 ~~~g~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li 368 (383)
T 3k3p_A 327 TEDGKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELV 368 (383)
T ss_dssp CTTCCEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHH
T ss_pred ECCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 878899999999999953 67778889999999887764
No 98
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.97 E-value=1.7e-29 Score=287.98 Aligned_cols=278 Identities=18% Similarity=0.238 Sum_probs=219.7
Q ss_pred CcEEEEECCCCcccCCCcccch---hHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDY---CCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~---~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
++||+|||+|+ +.|.+. ++.+++++++++|+++++++.+.... + .+...++
T Consensus 2 ~~~i~il~gg~-----s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~-------~--------------~~~~~~~ 55 (306)
T 1iow_A 2 TDKIAVLLGGT-----SAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDV-------T--------------QLKSMGF 55 (306)
T ss_dssp CCEEEEECCCS-----STTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCG-------G--------------GTTTTTE
T ss_pred CcEEEEEeCCC-----CccceEcHHhHHHHHHHHHHCCCeEEEEecCchHH-------H--------------HhhccCC
Confidence 46899999876 457777 67889999999999999998762210 0 0123567
Q ss_pred CccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHH
Q 001014 720 EGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEAD 797 (1190)
Q Consensus 720 d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e 797 (1190)
|.|++...+. ....++..++ ..| ++++|++++++.++.||..++++|+++|||+|++..+.+. +
T Consensus 56 d~v~~~~~~~~~e~~~~~~~~e----------~~g---~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~-~ 121 (306)
T 1iow_A 56 QKVFIALHGRGGEDGTLQGMLE----------LMG---LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA-E 121 (306)
T ss_dssp EEEEECCCSTTTSSSHHHHHHH----------HHT---CCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHH-H
T ss_pred CEEEEcCCCCCCcchHHHHHHH----------HcC---CCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchh-h
Confidence 8887665322 1123344555 778 9999999999999999999999999999999999998887 7
Q ss_pred HHH--------HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCC
Q 001014 798 ALA--------IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCG 869 (1190)
Q Consensus 798 ~~~--------~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G 869 (1190)
+.+ ++++++||+||||..+++|+|+.++++.+++.++++.+... ..+++||+|| .|.|++|.++ + |
T Consensus 122 ~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i-~g~e~~v~~~-~--g 195 (306)
T 1iow_A 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH--DEEVLIEKWL-SGPEFTVAIL-G--E 195 (306)
T ss_dssp HHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT--CSEEEEEECC-CCCEEEEEEE-T--T
T ss_pred hhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--CCCEEEEeCc-CCEEEEEEEE-C--C
Confidence 666 67789999999999999999999999999999998876432 5689999999 6999999999 3 3
Q ss_pred cEEEEeeeeeeecc-------cccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEc
Q 001014 870 NVVIGGIMEHIEQA-------GVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEAN 942 (1190)
Q Consensus 870 ~v~~~~i~e~~~~~-------g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiN 942 (1190)
++ .++.+..... +.+.|......|+ .++++..+++++++.+++++||+.|++++||+++.+|++||+|+|
T Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN 272 (306)
T 1iow_A 196 EI--LPSIRIQPSGTFYDYEAKFLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEAN 272 (306)
T ss_dssp EE--CCCEEEECSSSSSCHHHHHTCSCCEEESSC-CCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEE
T ss_pred Cc--cceEEEEeCCCeEchhheecCCCeeEEcCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEec
Confidence 32 3333332221 1223444445565 588889999999999999999999999999999778899999999
Q ss_pred cCCCCC----hhhhhcccCCCHHHHHHHHHc
Q 001014 943 PRASRT----VPFVSKAIGHPLAKYAALVMS 969 (1190)
Q Consensus 943 pR~~~s----~~~~~~~~G~~l~~~~~~~~l 969 (1190)
||++++ .+...+++|+|+.+++.+++.
T Consensus 273 ~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~~ 303 (306)
T 1iow_A 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 (306)
T ss_dssp SSCCCSTTCHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 999986 345577899999999988753
No 99
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.97 E-value=5e-30 Score=298.30 Aligned_cols=299 Identities=15% Similarity=0.167 Sum_probs=222.7
Q ss_pred CCcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCCCCcCcccc--CCcceeec--C------CcHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNPETVSTDYD--TSDRLYFE--P------LTVE 708 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p~~~s~~~~--~ad~~~~~--p------~~~e 708 (1190)
++.||+||+|| ++.|+|+| +.+++++|+ ||+++.++.+++......+ ..+..++. + ..++
T Consensus 19 ~~~~v~vl~gG-----~s~E~~vSl~S~~~v~~al~--g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (367)
T 2pvp_A 19 SHMEFCVLFGG-----ASFEHEISIVSAIALKGVLK--DRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLILT 91 (367)
T ss_dssp -CCCEEEEEEC-----SSTTHHHHHHHHHHHHHHHG--GGEEEEEEECTTCCEEECCGGGCSHHHHHTGGGSCCCCBEEE
T ss_pred cCCEEEEEECC-----CCcchhhhHHHHHHHHHHhC--CCeEEEEEECCCCCEEeccccccchhhhcccccccccccccc
Confidence 34579999985 57899998 566667887 9999999987753110000 00000000 0 0000
Q ss_pred HHHHHh-----hhc--CCCccccccCCchhh--hhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHH
Q 001014 709 DVLNVI-----DLE--RPEGIIVQFGGQTPL--KLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAII 779 (1190)
Q Consensus 709 ~v~~i~-----~~~--~~d~Vi~~~g~~~~~--~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l 779 (1190)
.. .+. ..+ ++|.|++..+|.... .++..++ ..| ++++|++++++.+++||..++++|
T Consensus 92 ~~-~~~~~~~~~~~~~~~D~v~~~lhg~~gedg~i~~~le----------~~g---ip~~G~~~~a~~~~~DK~~~k~~l 157 (367)
T 2pvp_A 92 HN-GLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLE----------FYR---IAFIGPRIEASVLSYNKYLTKLYA 157 (367)
T ss_dssp TT-EEEEEETTEEEEEECCSEEECCCSTTTTSSHHHHHHH----------HTT---CCEESCCHHHHHHHHSHHHHHHHH
T ss_pred Cc-ceeccccccccccCCCEEEEcCCCCCccHHHHHHHHH----------HcC---CCccCCCHHHHHHHcCHHHHHHHH
Confidence 00 011 133 799999988877432 4666677 889 999999999999999999999999
Q ss_pred HHcCCCCCCceeecCHH--HHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCc-
Q 001014 780 KELSIEQPKGGIAKSEA--DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDA- 856 (1190)
Q Consensus 780 ~~~gIp~p~~~~~~s~~--e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g- 856 (1190)
+++|||+|++..+.+.+ ++.+ ++.+|||+||||..+++|.|+.+|+|.+||.++++.++.. +.+++||+|| .|
T Consensus 158 ~~~Gip~p~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~--~~~vlVEe~I-~G~ 233 (367)
T 2pvp_A 158 KDLGIKTLDYVLLNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY--SKEVLIEPFI-QGV 233 (367)
T ss_dssp HHHTCBCCCCEEECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT--CSCEEEEECC-TTC
T ss_pred HHCCcCCCCEEEEeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeCC-CCC
Confidence 99999999999998876 6666 7789999999999999999999999999999999886543 5689999999 67
Q ss_pred ceEE-EeEEecCCCcEEEEeeeeeeec-------ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEE
Q 001014 857 IEID-VDALADSCGNVVIGGIMEHIEQ-------AGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQY 928 (1190)
Q Consensus 857 ~E~~-v~v~~d~~G~v~~~~i~e~~~~-------~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief 928 (1190)
+|++ +.+.. +|++....+ |.... .+.+.|.+....|+ .++++..+++++++.+++++||+.|++++||
T Consensus 234 ~E~svi~v~v--~g~~~~~~~-ei~~~~~~~d~~~ky~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf 309 (367)
T 2pvp_A 234 KEYNLAGCKI--KKDFCFSYI-EEPNKQEFLDFKQKYLDFSRNKAPKA-SLSNALEEQLKENFKKLYSDLFDGAIIRCDF 309 (367)
T ss_dssp EEEEEEEEEE--TTEEEEEEE-EETTTTEEECCCCSSCCSCCCSCCCC-CCCHHHHHHHHHHHHHHHTTTSTTCCEEEEE
T ss_pred ceeeEEEEEE--CCEEEEEEE-EEecCCceEcccccccCCCeeEEecC-CCCHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9966 44444 356655554 44321 22334444455566 5999999999999999999999999999999
Q ss_pred EEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCC
Q 001014 929 AITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLN 974 (1190)
Q Consensus 929 ~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~ 974 (1190)
+++ +|++||+|||||++++... ... ++.+++.+++.+.++.
T Consensus 310 ~~~-~g~~~vlEiN~rpg~t~~s--~~p--~~~~l~~~li~~~~~~ 350 (367)
T 2pvp_A 310 FVI-ENEVYLNEINPIPGSLANY--LFD--DFKTTLENLAQSLPKT 350 (367)
T ss_dssp EEE-TTEEEEEEEESSCGGGGGG--GSS--SHHHHHHHHHHHCC--
T ss_pred EEE-CCeEEEEEEeCCCCCCccc--ccC--CHHHHHHHHHhCcccc
Confidence 996 8999999999999885321 111 9999999999886654
No 100
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.3e-29 Score=295.79 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=222.8
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHH---HHHHHHhCCCeEEEecCCCCC-cCc------cccCCcceeec------
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCH---TSFSLQSAGYETIMMNSNPET-VST------DYDTSDRLYFE------ 703 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~---~~~al~~~G~~vi~v~~~p~~-~s~------~~~~ad~~~~~------ 703 (1190)
+..++||.||-||. +-|++.|+.. ++++|.+.+|+++.++.+++. +.. .....+..+..
T Consensus 7 ~~~~~~v~vl~GG~-----S~E~~vS~~sa~~v~~~l~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (373)
T 3lwb_A 7 RDRRVRVAVVFGGR-----SNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSG 81 (373)
T ss_dssp CTTCEEEEEEEEC----------CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC-------------------
T ss_pred CcCCcEEEEEecCC-----CCChhhHHHHHHHHHHHhhhcCceEEEEEecCCCCeEecCchhhhhhcccccccccccccc
Confidence 35677899998776 5688888554 456677789999999876542 110 00000000000
Q ss_pred -CCcH------HHHHHH------hhhcCCCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhh
Q 001014 704 -PLTV------EDVLNV------IDLERPEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDA 768 (1190)
Q Consensus 704 -p~~~------e~v~~i------~~~~~~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~ 768 (1190)
+..+ ..+... ....++|.|++...|.. ...++..|+ ..| ++++|+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vfp~lhG~~gEdg~iq~lle----------~~g---ip~vG~~~~a~~~ 148 (373)
T 3lwb_A 82 TELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLE----------LAG---VPYVGAGVLASAV 148 (373)
T ss_dssp ---------------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHHHHH----------HHT---CCBSSSCHHHHHH
T ss_pred cceEeeccccccceeeccccccccccCCccEEEECCCCCCCccHHHHHHHH----------HcC---CCccCCcHHHHHH
Confidence 0000 000000 11237999999886552 335666777 889 9999999999999
Q ss_pred ccCHHHHHHHHHHcCCCCCCceeecCHHH--HHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCc
Q 001014 769 AEDRERFNAIIKELSIEQPKGGIAKSEAD--ALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERP 846 (1190)
Q Consensus 769 ~~DK~~~~~~l~~~gIp~p~~~~~~s~~e--~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~ 846 (1190)
++||..++++|+++|||+|++..+.+.++ ..+..+++|||+||||..+++|.|+.+|+|.+||.++++.+... +.+
T Consensus 149 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~--~~~ 226 (373)
T 3lwb_A 149 GMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH--DPK 226 (373)
T ss_dssp HHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT--CSS
T ss_pred HcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCC
Confidence 99999999999999999999999987764 23446789999999999999999999999999999999987653 568
Q ss_pred EEEEEecCCcceEEEeEEecCCCcEEEEeeeeeeec--cc-----------ccccccccccCCCCCCHHHHHHHHHHHHH
Q 001014 847 VLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIEQ--AG-----------VHSGDSACMIPTKTISSSCLDTISSWTIK 913 (1190)
Q Consensus 847 vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~--~g-----------~~~gd~~~~~p~~~l~~~~~~~i~~~a~~ 913 (1190)
+|||+|| .|+|++|.++.++.+.+...++.+.... .+ .+.+.+....|+ .++++..+++++++.+
T Consensus 227 vlVEe~I-~G~E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~ 304 (373)
T 3lwb_A 227 VIVEAAI-SGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA-KVDDQVAEAIRQLAIR 304 (373)
T ss_dssp EEEEECC-EEEEEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSC-CCCHHHHHHHHHHHHH
T ss_pred EEEeCCC-CCeEEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCC-CCCHHHHHHHHHHHHH
Confidence 9999999 6999999999987654455555554422 11 122333344566 5999999999999999
Q ss_pred HHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 914 LAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 914 i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
++++||++|++++||+++.+|. ||+|||||++.+ +|...+++|+|+.++..+++
T Consensus 305 ~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li 362 (373)
T 3lwb_A 305 AFAAIDCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMI 362 (373)
T ss_dssp HHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhCCccEEEEEEEEECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999987788 999999999854 45567899999988776654
No 101
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.97 E-value=1.3e-29 Score=296.79 Aligned_cols=303 Identities=15% Similarity=0.186 Sum_probs=227.5
Q ss_pred CCcEEEEECCCCcccCCCcccch---hHHHHHHHHHhCCCeEEEecCCCCCcCcccc------------------CCcce
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDY---CCCHTSFSLQSAGYETIMMNSNPETVSTDYD------------------TSDRL 700 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~---~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~------------------~ad~~ 700 (1190)
.++||+||=||. +-|++- |+..++++|++.||+++.++.+++..-.... ....+
T Consensus 21 ~~~~v~vl~GG~-----S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (386)
T 3e5n_A 21 RKIRVGLIFGGK-----SAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGV 95 (386)
T ss_dssp CCEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCE
T ss_pred CCceEEEEeccC-----CCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccce
Confidence 466898887765 567784 4677888999999999999976542100000 01111
Q ss_pred eecCCcHH----HHHHHhhhcCCCccccccCCchh--hhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHH
Q 001014 701 YFEPLTVE----DVLNVIDLERPEGIIVQFGGQTP--LKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRER 774 (1190)
Q Consensus 701 ~~~p~~~e----~v~~i~~~~~~d~Vi~~~g~~~~--~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~ 774 (1190)
...|.... .........++|.|++...|... ..++..|+ ..| ++++|+++.++.+++||..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle----------~~g---ipy~G~~~~a~~~~~DK~~ 162 (386)
T 3e5n_A 96 ALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLR----------MAN---LPFVGSGVLGSAVAMDKDM 162 (386)
T ss_dssp EECTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHH----------HTT---CCBSSCCHHHHHHHHBHHH
T ss_pred eeccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHH----------HcC---CCccCCCHHHHHHHhCHHH
Confidence 11111000 00001234679999998766632 24667777 889 9999999999999999999
Q ss_pred HHHHHHHcCCCCCCceeecCHH----HHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEE
Q 001014 775 FNAIIKELSIEQPKGGIAKSEA----DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLID 850 (1190)
Q Consensus 775 ~~~~l~~~gIp~p~~~~~~s~~----e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliE 850 (1190)
++++|+++|||+|++..+.+.+ ++.++++.+|||+||||..+++|+|+.+|+|.+||.++++.++.. +.+++||
T Consensus 163 ~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVE 240 (386)
T 3e5n_A 163 AKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY--DHKVLVE 240 (386)
T ss_dssp HHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC--CCcEEEE
Confidence 9999999999999999999887 788888899999999999999999999999999999999886543 5689999
Q ss_pred EecCCcceEEEeEEecCCCcEEEEeeeeeeecc-------cccc-cccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 001014 851 KYLSDAIEIDVDALADSCGNVVIGGIMEHIEQA-------GVHS-GDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCG 922 (1190)
Q Consensus 851 efI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~-------g~~~-gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G 922 (1190)
+|| .|+|++|.++.++.+.+ ..+.+..... .... +.+....|+ .++++..+++++++.+++++||++|
T Consensus 241 e~I-~G~E~~v~vl~~~~~~~--~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G 316 (386)
T 3e5n_A 241 AAV-AGREIECAVLGNAVPHA--SVCGEVVVHDAFYSYATKYISEHGAEIVIPA-DIDAQTQQRIQQIAVQAYQALGCAG 316 (386)
T ss_dssp ECC-CSEEEEEEEECSSSCEE--EEEEEECC-----------------CEESSC-SSCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred cCC-CCeEEEEEEEeCCCceE--EEeEEEEeCCcccchhcccCCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcc
Confidence 999 68999999998854222 2222222111 1111 123344566 5999999999999999999999999
Q ss_pred ceeEEEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 923 LMNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 923 ~~~ief~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
++++||+++.+|++|++|||||++-+ +|...+++|+|+.++..+++
T Consensus 317 ~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li 366 (386)
T 3e5n_A 317 MARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLI 366 (386)
T ss_dssp EEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEEEEECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999778899999999999964 56677889999999887664
No 102
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.97 E-value=9.2e-29 Score=288.27 Aligned_cols=302 Identities=15% Similarity=0.176 Sum_probs=228.3
Q ss_pred CcEEEEECCCCcccCCCcccc---hhHHHHHHHHHhCCCeEEEecCCCCCcCccccCC------------------ccee
Q 001014 643 KKKVLILGGGPNRIGQGIEFD---YCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTS------------------DRLY 701 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd---~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~a------------------d~~~ 701 (1190)
++||.||=||. +-|.+ .|+..++++|++.||+++.++.+.+..-...+.. ..+.
T Consensus 3 ~~~v~vl~GG~-----S~E~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
T 3i12_A 3 KLRVGIVFGGK-----SAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLA 77 (364)
T ss_dssp CEEEEEEEECS-----STTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEE
T ss_pred ccEEEEEeccC-----CCCccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccce
Confidence 56788887765 56777 4467788899999999999997654211000000 0000
Q ss_pred ecCCcH-HHH---HHHhhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHH
Q 001014 702 FEPLTV-EDV---LNVIDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERF 775 (1190)
Q Consensus 702 ~~p~~~-e~v---~~i~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~ 775 (1190)
..|... ..+ .......++|.|++...|. +.-.++..|+ ..| ++++|+++.++.+++||..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~~le----------~~g---ip~~G~~~~a~~~~~DK~~~ 144 (364)
T 3i12_A 78 QVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR----------VAN---LPFVGSDVLSSAACMDKDVA 144 (364)
T ss_dssp ECTTCSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHHHHHH----------HTT---CCBSSCCHHHHHHHHCHHHH
T ss_pred ecccccccceeccccccccCCCCEEEEeCCCCCCcCHHHHHHHH----------HcC---CCccCCCHHHHHHHHCHHHH
Confidence 111000 000 0001245799999986555 2335677777 889 99999999999999999999
Q ss_pred HHHHHHcCCCCCCceeecCHH----HHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEE
Q 001014 776 NAIIKELSIEQPKGGIAKSEA----DALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDK 851 (1190)
Q Consensus 776 ~~~l~~~gIp~p~~~~~~s~~----e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEe 851 (1190)
+++|+++|||+|++..+.+.+ ++.++++++|||+||||..+++|.|+.+++|.+|+.++++.+... +.+++||+
T Consensus 145 k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe 222 (364)
T 3i12_A 145 KRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF--DHKVVVEQ 222 (364)
T ss_dssp HHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH--CSEEEEEE
T ss_pred HHHHHHCCCCCCCEEEEEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc--CCcEEEEc
Confidence 999999999999999998877 788888899999999999999999999999999999999987654 46899999
Q ss_pred ecCCcceEEEeEEecCCCcEEEEeeeeeeecccc-------cccc-cccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 001014 852 YLSDAIEIDVDALADSCGNVVIGGIMEHIEQAGV-------HSGD-SACMIPTKTISSSCLDTISSWTIKLAKRLNVCGL 923 (1190)
Q Consensus 852 fI~~g~E~~v~v~~d~~G~v~~~~i~e~~~~~g~-------~~gd-~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~ 923 (1190)
|| .|+|++|.++.++. ....++.+.....+. ..+. .....|+ .++++..+++++.+.+++++||++|+
T Consensus 223 ~I-~G~E~~v~vl~~~~--~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~alg~~G~ 298 (364)
T 3i12_A 223 GI-KGREIECAVLGNDN--PQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPA-QIPSEVNDKIRAIAIQAYQTLGCAGM 298 (364)
T ss_dssp CC-CSEEEEEEEEESSS--CEEEEEEEEECCTTCC--TTTTSGGGGCEEESSC-SSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred Cc-CCeEEEEEEEeCCC--ceEeeeEEEecCCCccCHHHcccCCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceE
Confidence 99 67999999998854 233333332211111 1222 3334465 59999999999999999999999999
Q ss_pred eeEEEEEecCCCEEEEEEccCCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 924 MNCQYAITTSGDVYLLEANPRASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 924 ~~ief~~d~~g~~~viEiNpR~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
+++||+++.+|++||+|||||++.+ +|...+++|+|+.+++.+++
T Consensus 299 ~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li 347 (364)
T 3i12_A 299 ARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLI 347 (364)
T ss_dssp EEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEEEecCCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHH
Confidence 9999999778999999999888864 56668889999999887764
No 103
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.96 E-value=3.9e-29 Score=286.71 Aligned_cols=292 Identities=15% Similarity=0.183 Sum_probs=217.6
Q ss_pred CcEEEEECCCCcccCCCcccchh---HHHHHHHHHhCCCeEEEecCCC--CCcCcc---ccCCcc---eeecCCcHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYC---CCHTSFSLQSAGYETIMMNSNP--ETVSTD---YDTSDR---LYFEPLTVEDVL 711 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~---~~~~~~al~~~G~~vi~v~~~p--~~~s~~---~~~ad~---~~~~p~~~e~v~ 711 (1190)
+.||+||.|| ++.|+|+| +.+++++|++ +++.++.++ .....+ ..+.+. ++..+. .+.
T Consensus 3 ~~~v~vl~gg-----~s~E~~vSl~s~~~v~~al~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 71 (322)
T 2fb9_A 3 FMRVLLIAGG-----VSPEHEVSLLSAEGVLRHIPF---PTDLAVIAQDGRWLLGEKALTALEAKAAPEGEHPF-PPP-- 71 (322)
T ss_dssp CCCEEEEEEC-----SSTTHHHHHHHHHHHHHHCSS---CEEEEEECTTSCEECHHHHHHHTTSSCCCCCCBCS-SCC--
T ss_pred CcEEEEEeCC-----CchhHHHHHHHHHHHHHHhcc---CeEEEEEcCCCCEEecccchhhhccccccceeccc-ccc--
Confidence 4689999975 57899998 6888888877 776666433 221100 011111 111110 000
Q ss_pred HHhhhcCCCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCc
Q 001014 712 NVIDLERPEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKG 789 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~ 789 (1190)
+ +.+++|.|++...|.. ...++..++ ..| ++++|++++++.+++||..++++|+++|||+|++
T Consensus 72 -~-~~~~~D~v~~~~hg~~gedg~i~~~le----------~~g---ip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~ 136 (322)
T 2fb9_A 72 -L-SWERYDVVFPLLHGRFGEDGTVQGFLE----------LLG---KPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPW 136 (322)
T ss_dssp -C-CCTTCSEEEEECCSTTTTSSHHHHHHH----------HHT---CCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCE
T ss_pred -c-cccCCCEEEEeCCCCCCccHHHHHHHH----------HcC---CCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCE
Confidence 1 2568999999886552 234566666 789 9999999999999999999999999999999999
Q ss_pred eeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCc-ceEEEeEEecCC
Q 001014 790 GIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDA-IEIDVDALADSC 868 (1190)
Q Consensus 790 ~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g-~E~~v~v~~d~~ 868 (1190)
..+.+.++. .. ++|||+||||..+++|.|+.++++.+||.++++.+.. .+.+++||+|| .| +|+++.++.+++
T Consensus 137 ~~~~~~~~~--~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~--~~~~vlvEe~I-~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 137 VAVRKGEPP--VV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR--YDEKAVVEKAL-SPVRELEVGVLGNVF 210 (322)
T ss_dssp EEEETTSCC--CC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT--TCSEEEEEECC-SSCEEEEEEEESSSS
T ss_pred EEEECchhh--hh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCeEEEEeCC-CCCeeEEEEEEeCCC
Confidence 988876542 22 6899999999999999999999999999999988654 25689999999 67 999999998754
Q ss_pred CcEEEEeeee----eee-cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 869 GNVVIGGIME----HIE-QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 869 G~v~~~~i~e----~~~-~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
+.+...+-.. ... ....+.|.+....|+ .++++..+++++++.+++++||++|++++||+++ +|++||+||||
T Consensus 211 ~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~ 288 (322)
T 2fb9_A 211 GEASPVGEVRYEAPFYDYETKYTPGRAELLIPA-PLDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNT 288 (322)
T ss_dssp CEEEEEEEEEEECCEEETTTEEECCEEEEESSC-CCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEES
T ss_pred ceEeeeEEEeeCCCccCHHHcccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEEC
Confidence 3332222111 111 112333444444566 5899999999999999999999999999999997 89999999999
Q ss_pred CCCCC----hhhhhcccCCCHHHHHHHHH
Q 001014 944 RASRT----VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 944 R~~~s----~~~~~~~~G~~l~~~~~~~~ 968 (1190)
|++.+ +|...+++|+|+.++..+++
T Consensus 289 rpg~t~~s~~p~~~~~~G~~~~~l~~~li 317 (322)
T 2fb9_A 289 IPGFTPTSMYPRLFEAGGVAYPELLRRLV 317 (322)
T ss_dssp SCCCSSSCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 99986 34456789999999987664
No 104
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.96 E-value=7.5e-29 Score=282.90 Aligned_cols=278 Identities=19% Similarity=0.255 Sum_probs=213.2
Q ss_pred CCcEEEEECCCCcccCCCcccc---hhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFD---YCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd---~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~ 718 (1190)
.+.||+||.||.. .|.| +++..++++|++.||+++.++.+... + . +.+..+
T Consensus 2 ~~m~v~vl~gg~s-----~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~--------~-----------~--~~~~~~ 55 (307)
T 3r5x_A 2 NAMRIGVIMGGVS-----SEKQVSIMTGNEMIANLDKNKYEIVPITLNEKM--------D-----------L--IEKAKD 55 (307)
T ss_dssp CCEEEEEEECCSH-----HHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGG--------G-----------H--HHHTTT
T ss_pred CCcEEEEEeCCCC-----cchHhHHHHHHHHHHHHHHCCCEEEEEcccCch--------h-----------H--HHhccC
Confidence 3568999988762 3444 45778899999999999999864210 0 0 122358
Q ss_pred CCccccccCCch--hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHH
Q 001014 719 PEGIIVQFGGQT--PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEA 796 (1190)
Q Consensus 719 ~d~Vi~~~g~~~--~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~ 796 (1190)
+|.|++...+.. ...++..++ ..| ++++|++++++.++.||..++++|+++|||+|++..+.+.+
T Consensus 56 ~D~v~~~~~~~~ge~~~~~~~le----------~~g---i~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~ 122 (307)
T 3r5x_A 56 IDFALLALHGKYGEDGTVQGTLE----------SLG---IPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME 122 (307)
T ss_dssp CSEEEECCCSHHHHSSHHHHHHH----------HHT---CCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSS
T ss_pred CCEEEEeCCCCCCcHHHHHHHHH----------HcC---CCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChh
Confidence 999998877652 223455666 789 99999999999999999999999999999999999998877
Q ss_pred HHHH-HHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEE-
Q 001014 797 DALA-IAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIG- 874 (1190)
Q Consensus 797 e~~~-~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~- 874 (1190)
++.. +++.++||+||||..++||+|+.++++.+++.++++.+... ..+++||+|| .|+|++|.++ + |+++..
T Consensus 123 ~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i-~G~e~~v~v~-~--g~~~~~~ 196 (307)
T 3r5x_A 123 DLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYI-KGEEITCSIF-D--GKQLPII 196 (307)
T ss_dssp CCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH--CSEEEEEECC-CSEEEEEEEE-T--TEECCCE
T ss_pred hhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEECCc-CCEEEEEEEE-C--CEEeeEE
Confidence 7654 77889999999999999999999999999999999887654 4689999999 6899999986 3 233211
Q ss_pred eeeeeee--c--ccc-cccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCC-
Q 001014 875 GIMEHIE--Q--AGV-HSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRT- 948 (1190)
Q Consensus 875 ~i~e~~~--~--~g~-~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s- 948 (1190)
.+..+.. . ... +.|.... |. .++++..+++++++.+++++||++|++++||+++ +|++||+|+|||++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~~~--p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~ 272 (307)
T 3r5x_A 197 SIRHAAEFFDYNAKYDDASTIEE--VI-ELPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPGMTQ 272 (307)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEE--EC-CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCCCST
T ss_pred EEEcCCcccChhhcCCCCCCeEe--cC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCCCCc
Confidence 1111111 0 011 1222222 44 6899999999999999999999999999999996 7999999999999864
Q ss_pred ---hhhhhcccCCCHHHHHHHHH
Q 001014 949 ---VPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 949 ---~~~~~~~~G~~l~~~~~~~~ 968 (1190)
++...+++|+|+.++..+++
T Consensus 273 ~s~~~~~~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 273 ASLLPKSADAAGIHYSKLLDMII 295 (307)
T ss_dssp TSHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHH
Confidence 45568899999999887765
No 105
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=99.96 E-value=6.8e-30 Score=254.40 Aligned_cols=136 Identities=21% Similarity=0.368 Sum_probs=126.1
Q ss_pred eeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCC
Q 001014 1017 MGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEG 1096 (1190)
Q Consensus 1017 ~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~ 1096 (1190)
||+|+|+++|++||+.++++++|..| +|+++.+.+|+.+.+.++.+.++||+|+||.||+++|+++||+++.|.|++||
T Consensus 1 mg~~~~~~~A~~Ka~~aag~~lP~~g-vliSv~d~dK~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~eg 79 (143)
T 2yvq_A 1 GSSGSSGHTAFLKAMLSTGFKIPQKG-ILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQE 79 (143)
T ss_dssp ----CCCCHHHHHHHTSCSCCCCCSE-EEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC
T ss_pred CCCcCCHHHHHHHHHHhcCCCCCCCC-EEEEecccchHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCC
Confidence 78999999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred -C----CcHHhHHHcCcEEEEEEcCCCC-CCCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHH
Q 001014 1097 -R----PHAGDMVANGQIQMMVITSSGD-SLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAI 1154 (1190)
Q Consensus 1097 -~----~~~~~~i~~~~i~lvint~~~~-~~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al 1154 (1190)
+ ||+.|+|++|+|||||||+++. +. ..|||.|||.|++++|||+||+++|++++++|
T Consensus 80 g~~~~~~~i~d~i~~g~i~lVInt~~~~~~~-~~d~~~iRR~Av~~~IP~~T~~~tA~a~~~al 142 (143)
T 2yvq_A 80 GQNPSLSSIRKLIRDGSIDLVINLPNNNTKF-VHDNYVIRRTAVDSGIPLLTNFQVTKLFAEAV 142 (143)
T ss_dssp -----CBCHHHHHHTTSCCEEEECCCCCGGG-HHHHHHHHHHHHHTTCCEECSHHHHHHHHHTC
T ss_pred CcccccccHHHHHHCCCceEEEECCCCCCcC-CccHHHHHHHHHHhCCCeEcCHHHHHHHHHHh
Confidence 8 9999999999999999999873 44 68999999999999999999999999999886
No 106
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.95 E-value=9.9e-27 Score=261.39 Aligned_cols=271 Identities=15% Similarity=0.188 Sum_probs=198.4
Q ss_pred EEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCC-EEEe
Q 001014 95 ILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPD-ALLP 173 (1190)
Q Consensus 95 VLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d-~Vip 173 (1190)
|+|++... |+++.+++++|+++|++|++++.++... ..++.. ....++| ++++
T Consensus 2 I~il~~~~---------~~~~~~~~~a~~~~G~~v~~~~~~~~~~----~~~~~~-------------~~~~~~d~~~~~ 55 (280)
T 1uc8_A 2 LAILYDRI---------RPDERMLFERAEALGLPYKKVYVPALPM----VLGERP-------------KELEGVTVALER 55 (280)
T ss_dssp EEEEESSC---------CHHHHHHHHHHHHHTCCEEEEEGGGCCE----ETTBCC-------------GGGTTCCEEEEC
T ss_pred EEEEecCC---------CHHHHHHHHHHHHcCCcEEEEehhhcee----eccCCC-------------cccCCCCEEEEC
Confidence 88998763 4778999999999999999998776532 122211 1224789 7777
Q ss_pred cCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEE
Q 001014 174 TMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLI 253 (1190)
Q Consensus 174 ~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvV 253 (1190)
.+++. .+..+ .+.++..|+++++ +++++..+.||..++++|+++|+|+|++..+.+.+++.++.++++ ||+|
T Consensus 56 ~~~~~--~~~~~----~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~-~p~v 127 (280)
T 1uc8_A 56 CVSQS--RGLAA----ARYLTALGIPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFG-YPVV 127 (280)
T ss_dssp CSSHH--HHHHH----HHHHHHTTCCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC-SSEE
T ss_pred Cccch--hhHHH----HHHHHHCCCceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhC-CCEE
Confidence 66632 33322 4578889999985 699999999999999999999999999999999999999999999 9999
Q ss_pred EecCCCCCCcceEEeCCHHHHHHHHHHH--HhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeC--C-CCc
Q 001014 254 IRPAFTLGGTGGGIAYNKEEFEAICKAG--LAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVD--P-MGV 328 (1190)
Q Consensus 254 VKP~~g~gg~Gv~iv~~~~el~~~~~~~--~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~--~-~g~ 328 (1190)
+||..+++|.|+.++++.+|+.++++.+ +..+...+++||+||+| .++++.++.. +|..+. ...+.. . ...
T Consensus 128 vKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~-~~~e~~v~v~-~~~~~~--~~~~~~~~~~~~~ 203 (280)
T 1uc8_A 128 LKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEK-PGRDIRVFVV-GERAIA--AIYRRSAHWITNT 203 (280)
T ss_dssp EECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCC-SSCCEEEEEE-TTEEEE--EEEC---------
T ss_pred EEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCC-CCceEEEEEE-CCEEEE--EEEEecCCccccc
Confidence 9999999999999999999999988765 33333568999999997 4444444433 344432 222211 0 112
Q ss_pred ccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 001014 329 HTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKM 408 (1190)
Q Consensus 329 ~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~ 408 (1190)
+.|.. ..|.. +++ ++++.+.++++++|+ |++++||++++ + ++||+|||||++++. ...++|+|+.+.
T Consensus 204 ~~g~~--~~p~~-l~~----~~~~~~~~~~~~lg~--g~~~vD~~~~~-~-g~~~iEiN~r~g~~~--~~~~~G~~~~~~ 270 (280)
T 1uc8_A 204 ARGGQ--AENCP-LTE----EVARLSVKAAEAVGG--GVVAVDLFESE-R-GLLVNEVNHTMEFKN--SVHTTGVDIPGE 270 (280)
T ss_dssp -------CEECC-CCH----HHHHHHHHHHHHTTC--SEEEEEEEEET-T-EEEEEEEETTCCCTT--HHHHHCCCHHHH
T ss_pred cCCcc--ccCCC-CCH----HHHHHHHHHHHHhCC--CeEEEEEEEeC-C-CeEEEEEeCCCCccc--hheeeccCHHHH
Confidence 22222 24664 664 689999999999999 99999999996 4 499999999998765 478899999999
Q ss_pred HHHHHcCC
Q 001014 409 AAKLSVGY 416 (1190)
Q Consensus 409 ~~~~alG~ 416 (1190)
+++.++|.
T Consensus 271 ~~~~~~~~ 278 (280)
T 1uc8_A 271 ILKYAWSL 278 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99988774
No 107
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.95 E-value=5.7e-27 Score=263.36 Aligned_cols=270 Identities=14% Similarity=0.138 Sum_probs=199.5
Q ss_pred EEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC-cccc
Q 001014 646 VLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE-GIIV 724 (1190)
Q Consensus 646 VlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d-~Vi~ 724 (1190)
|+|||... ++++.+++++++++|+++++++.++... ..++.. ....++| ++++
T Consensus 2 I~il~~~~---------~~~~~~~~~a~~~~G~~v~~~~~~~~~~----~~~~~~-------------~~~~~~d~~~~~ 55 (280)
T 1uc8_A 2 LAILYDRI---------RPDERMLFERAEALGLPYKKVYVPALPM----VLGERP-------------KELEGVTVALER 55 (280)
T ss_dssp EEEEESSC---------CHHHHHHHHHHHHHTCCEEEEEGGGCCE----ETTBCC-------------GGGTTCCEEEEC
T ss_pred EEEEecCC---------CHHHHHHHHHHHHcCCcEEEEehhhcee----eccCCC-------------cccCCCCEEEEC
Confidence 78888654 4678899999999999999999876542 122211 2235788 6777
Q ss_pred ccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHH
Q 001014 725 QFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKE 804 (1190)
Q Consensus 725 ~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~ 804 (1190)
.++......++..++ ..| +++++ +++++..+.||..++++|+++|||+|++..+.+.+++.+++++
T Consensus 56 ~~~~~~~~~~~~~l~----------~~g---~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~ 121 (280)
T 1uc8_A 56 CVSQSRGLAAARYLT----------ALG---IPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA 121 (280)
T ss_dssp CSSHHHHHHHHHHHH----------HTT---CCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHH
T ss_pred CccchhhHHHHHHHH----------HCC---CceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHH
Confidence 666555556666777 788 88875 6999999999999999999999999999999999999999999
Q ss_pred hCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHh--HhhCCCCcEEEEEecCC-cceEEEeEEecCCCcEEEEeeeeeee
Q 001014 805 IGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENA--VEVDPERPVLIDKYLSD-AIEIDVDALADSCGNVVIGGIMEHIE 881 (1190)
Q Consensus 805 igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~--~~~~~~~~vliEefI~~-g~E~~v~v~~d~~G~v~~~~i~e~~~ 881 (1190)
++||+|+||..+++|+|+.++++.+++.++++.+ .......+++||+||++ +.|+++.++. |+++ . ......
T Consensus 122 ~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~---~~~~-~-~~~~~~ 196 (280)
T 1uc8_A 122 FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG---ERAI-A-AIYRRS 196 (280)
T ss_dssp HCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEET---TEEE-E-EEEC--
T ss_pred hCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEEC---CEEE-E-EEEEec
Confidence 9999999999999999999999999999888764 32223578999999955 6777777652 3443 2 222210
Q ss_pred ---cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCC
Q 001014 882 ---QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGH 958 (1190)
Q Consensus 882 ---~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~ 958 (1190)
....+.|... .|. .+++ ++++.+.+++++||+ |++++||+++.+ ++||+|+|||++.+. +..++|+
T Consensus 197 ~~~~~~~~~g~~~--~p~-~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~-g~~~iEiN~r~g~~~--~~~~~G~ 265 (280)
T 1uc8_A 197 AHWITNTARGGQA--ENC-PLTE----EVARLSVKAAEAVGG-GVVAVDLFESER-GLLVNEVNHTMEFKN--SVHTTGV 265 (280)
T ss_dssp ------------C--EEC-CCCH----HHHHHHHHHHHHTTC-SEEEEEEEEETT-EEEEEEEETTCCCTT--HHHHHCC
T ss_pred CCccccccCCccc--cCC-CCCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCC-CeEEEEEeCCCCccc--hheeecc
Confidence 0111222221 233 3443 788999999999999 999999999665 499999999998765 4788999
Q ss_pred CHHHHHHHHHcCC
Q 001014 959 PLAKYAALVMSGK 971 (1190)
Q Consensus 959 ~l~~~~~~~~lG~ 971 (1190)
|+.+++++.++|+
T Consensus 266 ~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 266 DIPGEILKYAWSL 278 (280)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998874
No 108
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.94 E-value=9.1e-26 Score=260.46 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=188.4
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC-CCCccCcceEEECC-CCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI-MTDPGLADRTYITP-MTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~-~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d~ 170 (1190)
+||+|+|+| . +.+++++++++|++|+++++++..+ ......+|..+..+ .+. .++++ .+|+
T Consensus 3 m~Ililg~g-~-----------~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~l~~--~~d~ 65 (334)
T 2r85_A 3 VRIATYASH-S-----------ALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPE---EELLN--LNAV 65 (334)
T ss_dssp SEEEEESST-T-----------HHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCH---HHHHH--TTEE
T ss_pred eEEEEECCh-h-----------HHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcCh---HHhcc--cCCE
Confidence 589999998 2 6789999999999999999875432 00134556666555 443 23333 4688
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+|..+ .. ... . ...|+..|++++ ++++++..+.||..++++|+++|+|+|++ +.+.+ +++ |
T Consensus 66 i~~~~e--~~-~~~--~--~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~-------~l~-~ 127 (334)
T 2r85_A 66 VVPTGS--FV-AHL--G--IELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV--YEDPD-------DIE-K 127 (334)
T ss_dssp ECCCTT--HH-HHH--C--HHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CSCGG-------GCC-S
T ss_pred EEECcc--hh-hhh--H--HHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cCChH-------HcC-C
Confidence 876533 11 111 1 124578899977 46789999999999999999999999998 56554 468 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhc---CCCCcEEEeeecCCCeeeeEEEEEeCCCc-EEEEEeeeee--C
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAA---SLTSQVLVEKSLLGWKEYELEVMRDLADN-VVIICSIENV--D 324 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~---~~~~~vlVEe~I~G~~E~sv~v~~d~~g~-~~~~~~~e~~--~ 324 (1190)
|+||||..++||+|+.++++.+|+.++++.+... +....++|||||+| .|+++.++.+..++ +-.+....+. .
T Consensus 128 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e~~~~~~~~~~~~~v~~~~~~g~~~~~ 206 (334)
T 2r85_A 128 PVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDRRYESN 206 (334)
T ss_dssp CEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ceeEEEEeecCcCceeeeeeeccEEEec
Confidence 9999999999999999999999999999887643 22368999999999 89997776653333 2222111110 0
Q ss_pred CCCcc-----------cccEEEEe---cCCCCCHHHHHHHHHHHHHHHHHh-----CCccceEEEEEEEecCCCcEEEEE
Q 001014 325 PMGVH-----------TGDSITVA---PAQTLTDKEYQRLRDYSIAIIREI-----GVECGGSNVQFAVNPVDGEVMVIE 385 (1190)
Q Consensus 325 ~~g~~-----------~g~~~~~~---Pa~~l~~~~~~~l~~~a~~i~~~l-----g~~~G~~~vef~~~~~~g~~~viE 385 (1190)
..++. .+...... |+. ++++..+++++++.+++++| ++. |++|+||++++ +|++||+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~-l~~~~~~~i~~~a~~~~~~l~~~~~~~~-G~~~vd~~~~~-~g~~~viE 283 (334)
T 2r85_A 207 VDAIGRIPAKDQLEFDMDITYTVIGNIPIV-LRESLLMDVIEAGERVVKAAEELMGGLW-GPFCLEGVFTP-DLEFVVFE 283 (334)
T ss_dssp GGGGGGSCHHHHTTSCCCCCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHHHSSCCC-EEEEEEEEECT-TSCEEEEE
T ss_pred cCcccccccccccccccCCceeeeCCCCcc-cCHHHHHHHHHHHHHHHHHHHhhccccc-ccEEEEEEECC-CCCEEEEE
Confidence 00000 01112222 776 99889999999999999999 785 99999999997 78899999
Q ss_pred eCCCCCCch
Q 001014 386 MNPRVSRSS 394 (1190)
Q Consensus 386 iNpR~~gs~ 394 (1190)
||||++++.
T Consensus 284 iN~R~g~~~ 292 (334)
T 2r85_A 284 ISARIVAGT 292 (334)
T ss_dssp EECSCCGGG
T ss_pred EeCCcCCCc
Confidence 999999964
No 109
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.94 E-value=1.1e-25 Score=259.15 Aligned_cols=278 Identities=17% Similarity=0.210 Sum_probs=200.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc-CccccCCcceeecC-CcH---HHHHHHhhhc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV-STDYDTSDRLYFEP-LTV---EDVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~-s~~~~~ad~~~~~p-~~~---e~v~~i~~~~ 717 (1190)
+.+|+||||| . +++++++++++|++|++++.+++.+ ...+..+|+.+..+ .+- +++++.+.+.
T Consensus 18 ~~~I~ilGs~-l-----------~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~ 85 (361)
T 2r7k_A 18 EITIATLGSH-T-----------SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLREL 85 (361)
T ss_dssp SCEEEEESST-T-----------HHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHT
T ss_pred CCEEEEECcH-H-----------HHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHc
Confidence 4679999998 4 7788999999999999999986643 11344688877655 322 5666666654
Q ss_pred CCCccccccCCc-hhh-hhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCH
Q 001014 718 RPEGIIVQFGGQ-TPL-KLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSE 795 (1190)
Q Consensus 718 ~~d~Vi~~~g~~-~~~-~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~ 795 (1190)
+ +.|. +++. .+. .+....+ +.| ++++| +.+++.+..||.+.+++|+++|||+|++ +.+.
T Consensus 86 ~-~vV~--pe~~~v~~~gl~~l~~----------~~g---~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~~ 146 (361)
T 2r7k_A 86 N-SIVV--PHGSFIAYCGLDNVEN----------SFL---VPMFG-NRRILRWESERSLEGKLLREAGLRVPKK--YESP 146 (361)
T ss_dssp T-EEEC--CBHHHHHHHCHHHHHH----------TCC---SCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESSG
T ss_pred C-CEEE--eCchhhhHHHHHHHHH----------HcC---CCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCCH
Confidence 4 4444 3333 221 2222233 678 88887 8999999999999999999999999986 5666
Q ss_pred HHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhC----C-CCcEEEEEecCCcceEEEeEEecC-CC
Q 001014 796 ADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVD----P-ERPVLIDKYLSDAIEIDVDALADS-CG 869 (1190)
Q Consensus 796 ~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~----~-~~~vliEefI~~g~E~~v~v~~d~-~G 869 (1190)
+++ +||+||||..+++|+|+.+++|.+|+.++++.+.... . ..+++||||| .|.|+++..+... +|
T Consensus 147 ~e~-------~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl-~G~e~s~~~f~~~~~~ 218 (361)
T 2r7k_A 147 EDI-------DGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYV-VGTNFCIHYFYSPLKD 218 (361)
T ss_dssp GGC-------CSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECC-CSEEEEEEEEEETTTT
T ss_pred HHc-------CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEecc-ceEEeeEEEEecccCC
Confidence 554 6999999999999999999999999999988764321 0 1469999999 7999986666542 44
Q ss_pred cEEEEeeeeeeec--ccccc-----------cccccc---cCCCCCCHHHHHHHHHHHHHHHHHc------CCCcceeEE
Q 001014 870 NVVIGGIMEHIEQ--AGVHS-----------GDSACM---IPTKTISSSCLDTISSWTIKLAKRL------NVCGLMNCQ 927 (1190)
Q Consensus 870 ~v~~~~i~e~~~~--~g~~~-----------gd~~~~---~p~~~l~~~~~~~i~~~a~~i~~~L------g~~G~~~ie 927 (1190)
++-++++.+++.. .|+.. +..... .|. .++++..+++.+++++++++| ++.|++++|
T Consensus 219 ~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa-~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE 297 (361)
T 2r7k_A 219 EVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPV-VIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQ 297 (361)
T ss_dssp EEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEEC-CCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred eeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCC-cCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEE
Confidence 5666666555321 12111 000111 144 688899999999999999999 899999999
Q ss_pred EEEecCCCEEEEEEccCCCCChhhhhcccCCCHHH
Q 001014 928 YAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAK 962 (1190)
Q Consensus 928 f~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~ 962 (1190)
|+++.+|+++|+|+|||++|...+... |.++..
T Consensus 298 ~fvt~dg~i~V~EIapR~gGg~~~~~~--g~p~~~ 330 (361)
T 2r7k_A 298 SLCNENLELVVFEMSARVDGGTNSFMN--GGPYSF 330 (361)
T ss_dssp EEECTTSCEEEEEEESSBCGGGGGGTT--CCTTHH
T ss_pred EEEcCCCCEEEEEEcCCCCCCcccccC--CCCchh
Confidence 999767899999999999998665322 777554
No 110
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.93 E-value=1.1e-24 Score=251.35 Aligned_cols=263 Identities=14% Similarity=0.147 Sum_probs=186.4
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc-CccccCCcceeecC-CcHHHHHHHhhhcCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV-STDYDTSDRLYFEP-LTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~-s~~~~~ad~~~~~p-~~~e~v~~i~~~~~~d~ 721 (1190)
.||+|+|+| . +.+++++++++|+++++++.++..+ ......+|+.+..+ .+- ..++ +.+|.
T Consensus 3 m~Ililg~g-~-----------~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~l~--~~~d~ 65 (334)
T 2r85_A 3 VRIATYASH-S-----------ALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPE---EELL--NLNAV 65 (334)
T ss_dssp SEEEEESST-T-----------HHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCH---HHHH--HTTEE
T ss_pred eEEEEECCh-h-----------HHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcCh---HHhc--ccCCE
Confidence 489999998 2 7788999999999999999876442 11233556665544 322 2333 23576
Q ss_pred cccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHH
Q 001014 722 IIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAI 801 (1190)
Q Consensus 722 Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~ 801 (1190)
|++..+ .........|+ ..| ++++ ++++++.++.||..++++|+++|||+|++ +.+.++
T Consensus 66 i~~~~e-~~~~~~~~~le----------~~g---~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~---- 124 (334)
T 2r85_A 66 VVPTGS-FVAHLGIELVE----------NMK---VPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV--YEDPDD---- 124 (334)
T ss_dssp ECCCTT-HHHHHCHHHHH----------TCC---SCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CSCGGG----
T ss_pred EEECcc-hhhhhHHHHHH----------HcC---CCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cCChHH----
Confidence 665422 13333444556 788 8866 46799999999999999999999999998 565543
Q ss_pred HHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhh---CCCCcEEEEEecCCcceEEEeEEecCCCc-EEEEeee
Q 001014 802 AKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEV---DPERPVLIDKYLSDAIEIDVDALADSCGN-VVIGGIM 877 (1190)
Q Consensus 802 ~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~---~~~~~vliEefI~~g~E~~v~v~~d~~G~-v~~~~i~ 877 (1190)
++||+||||..++||+|+.++++.+|+..+++.+... ....+++||+|| .|.|+++.++.+.-+. +-....-
T Consensus 125 ---l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i-~G~e~~~~~~~~~~~~~v~~~~~~ 200 (334)
T 2r85_A 125 ---IEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYV-LGVPVYPHYFYSKVREELELMSID 200 (334)
T ss_dssp ---CCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECC-CCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ---cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEecc-CCceeEEEEeecCcCceeeeeeec
Confidence 5799999999999999999999999999998876532 123689999999 8999997777653222 3322222
Q ss_pred eee--ecccccc-----------ccccccc---CCCCCCHHHHHHHHHHHHHHHHHc-----CCCcceeEEEEEecCCCE
Q 001014 878 EHI--EQAGVHS-----------GDSACMI---PTKTISSSCLDTISSWTIKLAKRL-----NVCGLMNCQYAITTSGDV 936 (1190)
Q Consensus 878 e~~--~~~g~~~-----------gd~~~~~---p~~~l~~~~~~~i~~~a~~i~~~L-----g~~G~~~ief~~d~~g~~ 936 (1190)
... ...|+.. +...... |. .++++..+++++++.+++++| ++.|++++||+++++|++
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~-~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~ 279 (334)
T 2r85_A 201 RRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPI-VLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEF 279 (334)
T ss_dssp EEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEEC-CCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCE
T ss_pred cEEEeccCcccccccccccccccCCceeeeCCCCc-ccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCE
Confidence 111 1112111 1111111 44 588888999999999999999 889999999999778899
Q ss_pred EEEEEccCCCCCh
Q 001014 937 YLLEANPRASRTV 949 (1190)
Q Consensus 937 ~viEiNpR~~~s~ 949 (1190)
||+|+|||++++.
T Consensus 280 ~viEiN~R~g~~~ 292 (334)
T 2r85_A 280 VVFEISARIVAGT 292 (334)
T ss_dssp EEEEEECSCCGGG
T ss_pred EEEEEeCCcCCCc
Confidence 9999999999953
No 111
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.93 E-value=3.3e-25 Score=255.20 Aligned_cols=271 Identities=17% Similarity=0.250 Sum_probs=193.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC-CCCccCcceEEECC-CCH---HHHHHHHHHc
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI-MTDPGLADRTYITP-MTP---ELVEQVLEKE 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~-~~~~~~ad~~~i~p-~~~---~~v~~i~~~~ 166 (1190)
..+|+++|+| . +++++++++++|++|++++++++.+ ......+|+.++.+ ++. +.+++.+.+.
T Consensus 18 ~~~I~ilGs~-l-----------~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~ 85 (361)
T 2r7k_A 18 EITIATLGSH-T-----------SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLREL 85 (361)
T ss_dssp SCEEEEESST-T-----------HHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHT
T ss_pred CCEEEEECcH-H-----------HHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHc
Confidence 4589999998 4 6899999999999999999886543 00245688888766 533 5555555544
Q ss_pred CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 001014 167 RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE 246 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ 246 (1190)
. |+|.| ++.......+ ..+.++.|++++| +..++....||...|++|+++|||+|++ +++.++
T Consensus 86 ~-~vV~p--e~~~v~~~gl----~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~~~e------- 148 (361)
T 2r7k_A 86 N-SIVVP--HGSFIAYCGL----DNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKK--YESPED------- 148 (361)
T ss_dssp T-EEECC--BHHHHHHHCH----HHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESSGGG-------
T ss_pred C-CEEEe--CchhhhHHHH----HHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCCHHH-------
Confidence 3 55543 3211111111 1233478999987 8888899999999999999999999986 455554
Q ss_pred cCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCC-----CCcEEEeeecCCCeeeeEEEEEeCCCc-EEEEEee
Q 001014 247 IGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASL-----TSQVLVEKSLLGWKEYELEVMRDLADN-VVIICSI 320 (1190)
Q Consensus 247 ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~-----~~~vlVEe~I~G~~E~sv~v~~d~~g~-~~~~~~~ 320 (1190)
++ ||+||||..+++|+|+++++|.+|+.++++.++.... ..+++|||||+| .|+++..+..--.+ +-++...
T Consensus 149 ~~-~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id 226 (361)
T 2r7k_A 149 ID-GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMD 226 (361)
T ss_dssp CC-SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEE
T ss_pred cC-CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEec
Confidence 37 9999999999999999999999999999988754210 146999999999 89886666553233 3333222
Q ss_pred eeeCC--CCcc-----------cccEEEEe---cCCCCCHHHHHHHHHHHHHHHHHh------CCccceEEEEEEEecCC
Q 001014 321 ENVDP--MGVH-----------TGDSITVA---PAQTLTDKEYQRLRDYSIAIIREI------GVECGGSNVQFAVNPVD 378 (1190)
Q Consensus 321 e~~~~--~g~~-----------~g~~~~~~---Pa~~l~~~~~~~l~~~a~~i~~~l------g~~~G~~~vef~~~~~~ 378 (1190)
.++.. .|+. .+...... |+. +++...+++.+++.++++++ ++ +|++++||++++ +
T Consensus 227 ~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~-l~~~~~~~a~~~a~~v~~al~~~~~~~~-~G~~~vE~fvt~-d 303 (361)
T 2r7k_A 227 KRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV-IRESLLPQVFEMGDKLVAKAKELVPPGM-IGPFCLQSLCNE-N 303 (361)
T ss_dssp EEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHHHSTTCC-CEEEEEEEEECT-T
T ss_pred ceEEeecccceecchhhhhcccCCCceEEecCcCCc-CCHHHHHHHHHHHHHHHHHHHhhccCCc-cceEEEEEEEcC-C
Confidence 22110 0000 00112222 887 99999999999999999999 88 599999999996 7
Q ss_pred CcEEEEEeCCCCCCchHH
Q 001014 379 GEVMVIEMNPRVSRSSAL 396 (1190)
Q Consensus 379 g~~~viEiNpR~~gs~~l 396 (1190)
|+++|+|||||++|+..+
T Consensus 304 g~i~V~EIapR~gGg~~~ 321 (361)
T 2r7k_A 304 LELVVFEMSARVDGGTNS 321 (361)
T ss_dssp SCEEEEEEESSBCGGGGG
T ss_pred CCEEEEEEcCCCCCCccc
Confidence 889999999999998443
No 112
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.92 E-value=3.7e-25 Score=249.64 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=176.8
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC-ccccCCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS-TDYDTSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s-~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
+|++|||| . +++++++++++|++|++++.++..+. ..+..+|+.+..+..-+ ++ +..|.|+
T Consensus 4 ~I~~lGsg-l-----------~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d----l~--~~~dvit 65 (320)
T 2pbz_A 4 IVSTIASH-S-----------SLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS----IL--NDDGIVV 65 (320)
T ss_dssp CEEEESST-T-----------HHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC----TT--CCSSBCC
T ss_pred EEEEEcCH-h-----------HHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH----HH--hcCCEEE
Confidence 59999999 4 88889999999999999999876541 12347888776552112 33 2346665
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHH
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAK 803 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~ 803 (1190)
+.++. .+......++ +.| ++++ |+++++...+||...+++|+++|||+|++.. .+++
T Consensus 66 pe~e~-v~~~~l~~le----------~~~---~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~---~ee~----- 122 (320)
T 2pbz_A 66 PHGSF-VAYLGIEAIE----------KAK---ARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE---PEDA----- 122 (320)
T ss_dssp CBTTH-HHHSCHHHHH----------TCC---SCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC---SCCC-----
T ss_pred ecccc-hhHHHHHHHH----------HcC---CCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC---HhHc-----
Confidence 44332 3333444456 778 7766 5899999999999999999999999999873 3333
Q ss_pred HhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEec-CCCcEEEEeeeeeeec
Q 001014 804 EIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALAD-SCGNVVIGGIMEHIEQ 882 (1190)
Q Consensus 804 ~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d-~~G~v~~~~i~e~~~~ 882 (1190)
+++|||||||..++||+|+.+++| +|+..+++.+ . .+++||||| .|.+++++++.+ -+|++..+.+-++++.
T Consensus 123 ~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~----~-~~~IiEEfI-~g~~~~~~~f~~~~~g~~e~~~~~~r~e~ 195 (320)
T 2pbz_A 123 KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL----E-EPYRVERFI-PGVYLYVHFFYSPILERLELLGVDERVLI 195 (320)
T ss_dssp CSSCCEEEECC------------C-EECSCCCC---------CCEEEECC-CSCEEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc----C-CCEEEEeee-ceEecceeEEeccccCceeEEEecceEEE
Confidence 589999999999999999999999 9987665442 1 479999999 688888777765 3577877777777654
Q ss_pred cccccccccc-------ccC---CCCCCHHHHHHHHHHHHHHHHHc------CCCcceeEEEEEecCCCEEEEEEccCCC
Q 001014 883 AGVHSGDSAC-------MIP---TKTISSSCLDTISSWTIKLAKRL------NVCGLMNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 883 ~g~~~gd~~~-------~~p---~~~l~~~~~~~i~~~a~~i~~~L------g~~G~~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
..|.... ++. |..++++..+++.+++++++++| |+.|++++| ++.+|++||+|+|||++
T Consensus 196 ---~~g~~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~ 270 (320)
T 2pbz_A 196 ---ADGNARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASRID 270 (320)
T ss_dssp ---TCSSSSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESSBC
T ss_pred ---ECCeeecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCCCC
Confidence 2222211 111 33578888999999999999999 999999999 54788999999999988
Q ss_pred CC
Q 001014 947 RT 948 (1190)
Q Consensus 947 ~s 948 (1190)
|.
T Consensus 271 GG 272 (320)
T 2pbz_A 271 GG 272 (320)
T ss_dssp SG
T ss_pred CC
Confidence 85
No 113
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.90 E-value=3.1e-24 Score=242.14 Aligned_cols=253 Identities=18% Similarity=0.177 Sum_probs=174.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC-CCCccCcceEEECC-CCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI-MTDPGLADRTYITP-MTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~-~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d~ 170 (1190)
.+|++|||| . +++++.+++++|++|++++.+++.+ .....++|+.++.+ ++. +. +..|+
T Consensus 3 ~~I~~lGsg-l-----------~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d------l~-~~~dv 63 (320)
T 2pbz_A 3 LIVSTIASH-S-----------SLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS------IL-NDDGI 63 (320)
T ss_dssp -CEEEESST-T-----------HHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC------TT-CCSSB
T ss_pred eEEEEEcCH-h-----------HHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH------HH-hcCCE
Confidence 379999999 4 7899999999999999999986653 00256789888766 432 22 35688
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF 250 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~ 250 (1190)
|+|..+ +.+... ...+++.|+++. ++.+++....||...+++|+++|||+|++.. .+++ +++ |
T Consensus 64 itpe~e-----~v~~~~--l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~---~ee~-----~i~-~ 126 (320)
T 2pbz_A 64 VVPHGS-----FVAYLG--IEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE---PEDA-----KPD-E 126 (320)
T ss_dssp CCCBTT-----HHHHSC--HHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC---SCCC-----CSS-C
T ss_pred EEeccc-----chhHHH--HHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC---HhHc-----CcC-C
Confidence 776554 111100 123567889877 5788899999999999999999999999883 2333 478 9
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEe-CCCcEEEEEeeeeeCC-CCc
Q 001014 251 PLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRD-LADNVVIICSIENVDP-MGV 328 (1190)
Q Consensus 251 PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d-~~g~~~~~~~~e~~~~-~g~ 328 (1190)
||||||..++||+|+++++| +|+..+++.+ + .+++|||||+| .+++..++.+ -.|++..+....++.. .|.
T Consensus 127 PviVKp~~g~ggkG~~~v~~-eel~~~~~~~---~--~~~IiEEfI~g-~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~ 199 (320)
T 2pbz_A 127 LYFVRIEGPRGGSGHFIVEG-SELEERLSTL---E--EPYRVERFIPG-VYLYVHFFYSPILERLELLGVDERVLIADGN 199 (320)
T ss_dssp CEEEECC------------C-EECSCCCC---------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEEEEEETTCSS
T ss_pred cEEEEECCCCCCCCEEEECh-HHHHHHHHhc---C--CCEEEEeeece-EecceeEEeccccCceeEEEecceEEEECCe
Confidence 99999999999999999999 9997765443 1 47999999999 7777666665 3556655555444422 111
Q ss_pred c------cccEEE-EecCCCCCHHHHHHHHHHHHHHHHHh------CCccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 329 H------TGDSIT-VAPAQTLTDKEYQRLRDYSIAIIREI------GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 329 ~------~g~~~~-~~Pa~~l~~~~~~~l~~~a~~i~~~l------g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
. ...+.. ..|+. +++...+++.+++.+++++| |+ +|++++| +++ +++++|+|||||++|+
T Consensus 200 ~~~p~~~~~~~~~G~~P~~-~~~~~~~~a~~~a~~i~~~L~~l~~~g~-~G~~~vE--~~~-dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 200 ARWPVKPLPYTIVGNRAIA-LRESLLPQLYDYGLAFVRTMRELEPPGV-IGPFALH--FAY-DGSFKAIGIASRIDGG 272 (320)
T ss_dssp SSSCCSCCCCCEEEEEECE-ECGGGHHHHHHHHHHHHHHHHHHSTTCC-CSEEEEE--EEC-SSSCEEEEEESSBCSG
T ss_pred eecccCCCceeeecCCCCc-cCHHHHHHHHHHHHHHHHHHHhhccCCc-eeeEEEE--EcC-CCcEEEEEecCCCCCC
Confidence 1 000111 12776 88888899999999999999 99 5999999 564 7889999999998886
No 114
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.89 E-value=3.1e-22 Score=227.11 Aligned_cols=208 Identities=20% Similarity=0.317 Sum_probs=161.8
Q ss_pred HHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCH
Q 001014 158 LVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTL 237 (1190)
Q Consensus 158 ~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~ 237 (1190)
.+.++++ ++|++++...+..+..... .+.++..| +++|+++++++.++||..+++++++ |+|+|++..
T Consensus 62 ~l~~~~~--~~D~~~~i~~~ed~~l~~~----~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~---- 129 (305)
T 3df7_A 62 SMEKYLE--KSDAFLIIAPEDDFLLYTL----TKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL---- 129 (305)
T ss_dssp GHHHHHT--TCSEEEEECCCGGGHHHHH----HHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES----
T ss_pred HHHHHHH--hcCEEEEEccCCcHHHHHH----HHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec----
Confidence 4455554 7888777644433332222 33566666 7999999999999999999999999 999999985
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEE
Q 001014 238 DECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 238 ~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~ 317 (1190)
.+++ ||+||||..++||.|+.++++ ....+++|+||+| +|+++.++.+ +.+..+
T Consensus 130 -------~~~~-~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lvEe~I~G-~e~sv~v~~g--~~~~~~ 183 (305)
T 3df7_A 130 -------RPLD-CKFIIKPRTACAGEGIGFSDE---------------VPDGHIAQEFIEG-INLSVSLAVG--EDVKCL 183 (305)
T ss_dssp -------SCCS-SSEEEEESSCC----CBCCSS---------------CCTTEEEEECCCS-EEEEEEEEES--SSEEEE
T ss_pred -------ccCC-CCEEEEeCCCCCCCCEEEEec---------------CCCCEEEEeccCC-cEEEEEEEeC--CeEEEE
Confidence 2578 999999999999999999998 2568999999999 9999999983 344444
Q ss_pred Ee-eeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh-CCccceEEEEEEEecCCCcEEEEEeCCCCCCchH
Q 001014 318 CS-IENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI-GVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSA 395 (1190)
Q Consensus 318 ~~-~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l-g~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~ 395 (1190)
+. .+..+.. .......|+. ++++..+++++.+.+++++| |+. |++++||+++ |++||+|||||++++..
T Consensus 184 ~~~~~~~~~~----~~~g~~~p~~-l~~~~~~~i~~~a~~~~~~l~g~~-G~~~vD~~~~---~~~~viEiNpR~~~~~~ 254 (305)
T 3df7_A 184 SVNEQIINNF----RYAGAVVPAR-ISDEVKREVVEEAVRAVECVEGLN-GYVGVDIVYS---DQPYVIEINARLTTPVV 254 (305)
T ss_dssp EEEEEEEETT----EEEEEEESCC-CCHHHHHHHHHHHHHHHTTSTTCC-EEEEEEEEES---SSEEEEEEESSCCGGGG
T ss_pred EEeeEeccCc----eeccccccCC-CCHHHHHHHHHHHHHHHHHcCCCc-CceEEEEEEC---CCEEEEEEcCCCCCCHH
Confidence 32 2322221 1123367887 99999999999999999999 996 9999999995 57999999999999876
Q ss_pred HHHHHhCCCHHHHHHHH
Q 001014 396 LASKATGFPIAKMAAKL 412 (1190)
Q Consensus 396 l~~~atG~~l~~~~~~~ 412 (1190)
....++|+|+++.++++
T Consensus 255 ~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 255 AFSRAYGASVADLLAGG 271 (305)
T ss_dssp GHHHHHSCCHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHhc
Confidence 67899999999999987
No 115
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=99.88 E-value=1.1e-23 Score=206.92 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=111.7
Q ss_pred CCCCCCceeeecCCCChhHHHHHHHHHHHC--CCeeeeccccHHHHHH-cCCceEEEecccC-CCCcHHhHHHcCcEEEE
Q 001014 1037 KLPLSGTVFLSLNDLTKPHLERIAKAFLDI--GFKIVSTSGTAHFLEL-KGIAVERVLKMHE-GRPHAGDMVANGQIQMM 1112 (1190)
Q Consensus 1037 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~i~a~~gt~~~l~~-~g~~~~~v~~~~e-~~~~~~~~i~~~~i~lv 1112 (1190)
.+|..|+|++++.|.+|+.+.+.++++.++ ||+|+||.||+++|++ +|++|++|.|++| |+|++.|+|++|+||+|
T Consensus 7 ~~p~~g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlV 86 (152)
T 1b93_A 7 TLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVL 86 (152)
T ss_dssp EECSSCEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEE
T ss_pred cCCCCCEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEE
Confidence 368899999999999999999999999999 9999999999999999 9999999999999 79999999999999999
Q ss_pred EEcCC--CCCCCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHH
Q 001014 1113 VITSS--GDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIR 1155 (1190)
Q Consensus 1113 int~~--~~~~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~ 1155 (1190)
|||++ +.+....|++.|||.|++++|||+||+++|.|+++++-
T Consensus 87 Int~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ai~ 131 (152)
T 1b93_A 87 IFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSPH 131 (152)
T ss_dssp EEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSGG
T ss_pred EEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHh
Confidence 99998 64432589999999999999999999999999999973
No 116
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=99.88 E-value=1.5e-23 Score=209.13 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=118.2
Q ss_pred CCCCCCceeeecCCCChhHHHHHHHHHHHC--CCeeeeccccHHHHHH-cCCceEEEecccC-CCCcHHhHHHcCcEEEE
Q 001014 1037 KLPLSGTVFLSLNDLTKPHLERIAKAFLDI--GFKIVSTSGTAHFLEL-KGIAVERVLKMHE-GRPHAGDMVANGQIQMM 1112 (1190)
Q Consensus 1037 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~i~a~~gt~~~l~~-~g~~~~~v~~~~e-~~~~~~~~i~~~~i~lv 1112 (1190)
.+|..|+|++++.|.+|+.+.+.++++.++ ||+|+||.||+++|++ .||+|++|.|++| |+|+|.|+|++|+||+|
T Consensus 23 ~lP~~g~V~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlV 102 (178)
T 1vmd_A 23 FMDKKKRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVL 102 (178)
T ss_dssp EECSSCEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEE
T ss_pred eCCCCCEEEEEEehhhHHHHHHHHHHHHHHhcCCEEEEchHHHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEE
Confidence 478899999999999999999999999999 9999999999999999 9999999999999 79999999999999999
Q ss_pred EEcCC--CCCCCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHHhccCCCc--ccccchhhhh
Q 001014 1113 VITSS--GDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRSLKSNTV--TMTALQDFFD 1172 (1190)
Q Consensus 1113 int~~--~~~~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~~~~~~~--~~~~l~~~~~ 1172 (1190)
|||++ +.+....|++.|||.|+.++|||+||+++|.|+++++-- . +++ ....+++|.+
T Consensus 103 Int~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~ail~-~-~~~~~~~~d~~~~~~ 164 (178)
T 1vmd_A 103 IFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSPLM-N-DVYEKIQIDYEEELE 164 (178)
T ss_dssp EEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHSGGG-G-SCEEEEEECHHHHHH
T ss_pred EEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHhc-c-cccccCCCCHHHHHH
Confidence 99998 644325899999999999999999999999999999732 1 123 2345666654
No 117
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.88 E-value=5.8e-22 Score=224.88 Aligned_cols=209 Identities=13% Similarity=0.231 Sum_probs=158.8
Q ss_pred HHHHHHHhhhcCCCccccccCCc--hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCC
Q 001014 707 VEDVLNVIDLERPEGIIVQFGGQ--TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSI 784 (1190)
Q Consensus 707 ~e~v~~i~~~~~~d~Vi~~~g~~--~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gI 784 (1190)
.+.+.++++. +|.+++...++ ....+.+.++ ..| +++|++++++++++||..+++++++ ||
T Consensus 60 ~~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~----------~~g----~~~g~~~~~~~~~~dK~~~~~~l~~-Gi 122 (305)
T 3df7_A 60 MDSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAE----------KYC----ENLGSSSRAIAVTSDKWELYKKLRG-EV 122 (305)
T ss_dssp GGGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHH----------TTS----EESSCCHHHHHHHTSHHHHHHHHTT-TS
T ss_pred HHHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHH----------hcC----CccCCCHHHHHHhcCHHHHHHHHHh-CC
Confidence 3455666654 45544332222 2224555555 555 5889999999999999999999999 99
Q ss_pred CCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEE
Q 001014 785 EQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDAL 864 (1190)
Q Consensus 785 p~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~ 864 (1190)
|+|++.. ..++||+|+||..++||+|+.++++ ...++++|+|| .|.|++|.++
T Consensus 123 p~p~~~~-----------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lvEe~I-~G~e~sv~v~ 175 (305)
T 3df7_A 123 QVPQTSL-----------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIAQEFI-EGINLSVSLA 175 (305)
T ss_dssp CCCCEES-----------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEEEECC-CSEEEEEEEE
T ss_pred CCCCEec-----------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEEEecc-CCcEEEEEEE
Confidence 9999975 2579999999999999999999998 35689999999 6999999999
Q ss_pred ecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHc-CCCcceeEEEEEecCCCEEEEEEcc
Q 001014 865 ADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRL-NVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 865 ~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~L-g~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
.+ + .+.......+......+. ....|. .++++..+++++++.+++++| |++|++++||+++ |++|++||||
T Consensus 176 ~g-~-~~~~~~~~~~~~~~~~~~---g~~~p~-~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNp 247 (305)
T 3df7_A 176 VG-E-DVKCLSVNEQIINNFRYA---GAVVPA-RISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINA 247 (305)
T ss_dssp ES-S-SEEEEEEEEEEEETTEEE---EEEESC-CCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEES
T ss_pred eC-C-eEEEEEEeeEeccCceec---cccccC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcC
Confidence 84 2 444444333222111111 123344 588999999999999999999 9999999999993 7899999999
Q ss_pred CCCCChhhhhcccCCCHHHHHHHH
Q 001014 944 RASRTVPFVSKAIGHPLAKYAALV 967 (1190)
Q Consensus 944 R~~~s~~~~~~~~G~~l~~~~~~~ 967 (1190)
|++++...+..++|+|+.++++++
T Consensus 248 R~~~~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 248 RLTTPVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp SCCGGGGGHHHHHSCCHHHHHTTC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHhc
Confidence 999998777899999999999988
No 118
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.87 E-value=2.2e-21 Score=221.65 Aligned_cols=295 Identities=14% Similarity=0.076 Sum_probs=197.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcce--EEECCCCHHHHH----HHHHHc
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADR--TYITPMTPELVE----QVLEKE 166 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~--~~i~p~~~~~v~----~i~~~~ 166 (1190)
+||+|+.+|... ..-.++++.+++++|+++|++++++++++.........++. ..+.......+. ......
T Consensus 2 m~i~il~~~~~~---~~~~~~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (316)
T 1gsa_A 2 IKLGIVMDPIAN---INIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLA 78 (316)
T ss_dssp CEEEEECSCGGG---CCTTTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGG
T ss_pred ceEEEEeCcHHh---CCcCCChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccc
Confidence 489999998531 11135899999999999999999998764321111111111 001100000000 001124
Q ss_pred CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 001014 167 RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE 246 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ 246 (1190)
++|+|++..++...........-.+.++..|++++ ++++++..+.||..++++++ |+|++..+++.+++.++.++
T Consensus 79 ~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~ 153 (316)
T 1gsa_A 79 DLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLVTRNKAQLKAFWEK 153 (316)
T ss_dssp GSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEEESCHHHHHHHHHH
T ss_pred cCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEEeCCHHHHHHHHHH
Confidence 69999998765432211101111335667899877 68999999999999999887 99999999999999998888
Q ss_pred cCCCcEEEecCCCCCCcceEEeC-CHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeeeeeC-
Q 001014 247 IGEFPLIIRPAFTLGGTGGGIAY-NKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVD- 324 (1190)
Q Consensus 247 ig~~PvVVKP~~g~gg~Gv~iv~-~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e~~~- 324 (1190)
++ |+|+||..|++|+|+.+++ +.+++..+++.+.. .....+++|+||+|.+++++.++.. +|+++.+. ..+..
T Consensus 154 ~~--p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-~~~~~~lvqe~i~~~~~~~~~v~~~-~g~~~~~~-~~r~~~ 228 (316)
T 1gsa_A 154 HS--DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-HGTRYCMAQNYLPAIKDGDKRVLVV-DGEPVPYC-LARIPQ 228 (316)
T ss_dssp HS--SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-TTTSCEEEEECCGGGGGCEEEEEEE-TTEECSEE-EEEECC
T ss_pred cC--CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-cCCceEEEecccCCCCCCCEEEEEE-CCEEeeeE-EEEeCC
Confidence 87 9999999999999999998 89999888776432 2236899999999833566666554 45544322 22221
Q ss_pred ----CCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHH---HhCCccceEEEEEEEecCCCcEEEEEeCCCCCCchHHH
Q 001014 325 ----PMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIR---EIGVECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALA 397 (1190)
Q Consensus 325 ----~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~---~lg~~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~ 397 (1190)
...++.|... .|.. ++++ +.+.+.++.+ ++|+ +++++||+ | +||+|||||.+++....
T Consensus 229 ~~~~~~~~~~gg~~--~~~~-~~~~----~~~~a~~~~~~l~~~g~--~~~~vD~~-----g-~~~iEvN~r~~~~~~~~ 293 (316)
T 1gsa_A 229 GGETRGNLAAGGRG--EPRP-LTES----DWKIARQIGPTLKEKGL--IFVGLDII-----G-DRLTEINVTSPTCIREI 293 (316)
T ss_dssp SSCSCCCGGGTCEE--EEEE-CCHH----HHHHHHHHHHHHHHTTC--CEEEEEEE-----T-TEEEEEECSSCCCHHHH
T ss_pred CCCceeEEccCCcc--ccCC-CCHH----HHHHHHHHHHHHHhCCC--cEEEEEec-----C-CEEEEEcCCCCcchHHH
Confidence 1233445543 3443 5553 3455555554 4677 78899998 3 38999999876555566
Q ss_pred HHHhCCCHHHHHHHHHcC
Q 001014 398 SKATGFPIAKMAAKLSVG 415 (1190)
Q Consensus 398 ~~atG~~l~~~~~~~alG 415 (1190)
+.++|+|+.+.+++...+
T Consensus 294 ~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 294 EAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp HHHSSCCHHHHHHHHHHH
T ss_pred HHhhCcCHHHHHHHHHHH
Confidence 789999999999887644
No 119
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=99.87 E-value=1.3e-22 Score=195.22 Aligned_cols=114 Identities=24% Similarity=0.262 Sum_probs=106.5
Q ss_pred ceeeecCCCChhHHHHHHHHHHHC--CCeeeeccccHHHHHH-cCCceEEEeccc-CCCCcHHhHHHcCcEEEEEEcCC-
Q 001014 1043 TVFLSLNDLTKPHLERIAKAFLDI--GFKIVSTSGTAHFLEL-KGIAVERVLKMH-EGRPHAGDMVANGQIQMMVITSS- 1117 (1190)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~i~a~~gt~~~l~~-~g~~~~~v~~~~-e~~~~~~~~i~~~~i~lvint~~- 1117 (1190)
++=+++.|.+|+.+.+.++++.++ ||+|+||.||+++|++ .|+++++|.|++ ||+|++.|+|++|+||+||||++
T Consensus 5 ~ialsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~p 84 (134)
T 2xw6_A 5 ALALIAHDAKKEEMVAFCQRHREVLARFPLVATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDP 84 (134)
T ss_dssp EEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCT
T ss_pred EEEEEEecccHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCc
Confidence 355688999999999999999999 9999999999999999 999999999999 99999999999999999999998
Q ss_pred -CCCCCCcccHHHHHHHHHCCCcEEccHHHHHHHHHHHHh
Q 001014 1118 -GDSLDQIDGLKLRRRGLAYKVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1118 -~~~~~~~d~~~iRr~A~~~~ip~~T~~~~a~a~~~al~~ 1156 (1190)
+.+....|++.|||.|++++|||+||+++|+|++++|+.
T Consensus 85 l~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~al~~ 124 (134)
T 2xw6_A 85 LTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIPWLQS 124 (134)
T ss_dssp TTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHHHHHT
T ss_pred ccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHHHHHH
Confidence 644325899999999999999999999999999999975
No 120
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.84 E-value=2.3e-20 Score=213.14 Aligned_cols=290 Identities=14% Similarity=0.109 Sum_probs=193.1
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcc--eeec--CCc-HH-HHHHHhhhc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDR--LYFE--PLT-VE-DVLNVIDLE 717 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~--~~~~--p~~-~e-~v~~i~~~~ 717 (1190)
.||+|+.+|.... .+ .++++.+++++++++|+++++++.++.........++. .... +.. ++ +........
T Consensus 2 m~i~il~~~~~~~--~~-~~~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (316)
T 1gsa_A 2 IKLGIVMDPIANI--NI-KKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLA 78 (316)
T ss_dssp CEEEEECSCGGGC--CT-TTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGG
T ss_pred ceEEEEeCcHHhC--Cc-CCChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccc
Confidence 3799999876321 11 46889999999999999999999864432211100110 0000 000 00 000111224
Q ss_pred CCCccccccCCch------hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCcee
Q 001014 718 RPEGIIVQFGGQT------PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGI 791 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~------~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~ 791 (1190)
++|+|++..++.. ...+...++ ..| ++++ ++++++.++.||..++++++ |+|++..
T Consensus 79 ~~d~v~~~~~~~~~~~~~~~~~~~~~l~----------~~g---~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~ 140 (316)
T 1gsa_A 79 DLDVILMRKDPPFDTEFIYATYILERAE----------EKG---TLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLV 140 (316)
T ss_dssp GSSEEEECCCCCCCHHHHHHHHHHHHHH----------HTT---CEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEE
T ss_pred cCCEEEEecCCCCchhhHHHHHHHHHHH----------HcC---CeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEE
Confidence 6899987665431 224455555 678 8876 58999999999999999997 9999999
Q ss_pred ecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeC-CHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEEecCCCc
Q 001014 792 AKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVY-TDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDALADSCGN 870 (1190)
Q Consensus 792 ~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~-~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~ 870 (1190)
+.+.+++.++++++| |+|+||..+++|+|+.+++ +.+++..+++.... ....++++|+||++..++++.++.. +|+
T Consensus 141 ~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-~~~~~~lvqe~i~~~~~~~~~v~~~-~g~ 217 (316)
T 1gsa_A 141 TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-HGTRYCMAQNYLPAIKDGDKRVLVV-DGE 217 (316)
T ss_dssp ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-TTTSCEEEEECCGGGGGCEEEEEEE-TTE
T ss_pred eCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-cCCceEEEecccCCCCCCCEEEEEE-CCE
Confidence 999999999988899 9999999999999999998 88899887776332 2246899999995412445554543 345
Q ss_pred EEEEeeeeeee----cccccccccccccCCCCCCHHHHHHHHHHHHHHHHH---cCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 871 VVIGGIMEHIE----QAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKR---LNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 871 v~~~~i~e~~~----~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~---Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
++.+.+..... ..+.+.|.... |. .+++ ++.+++.+++++ +|+ |.+++||+ |. |||||||
T Consensus 218 ~~~~~~~r~~~~~~~~~~~~~gg~~~--~~-~~~~----~~~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEvN~ 284 (316)
T 1gsa_A 218 PVPYCLARIPQGGETRGNLAAGGRGE--PR-PLTE----SDWKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEINV 284 (316)
T ss_dssp ECSEEEEEECCSSCSCCCGGGTCEEE--EE-ECCH----HHHHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEEEC
T ss_pred EeeeEEEEeCCCCCceeEEccCCccc--cC-CCCH----HHHHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEEcC
Confidence 54323322211 11223333222 22 3444 345566666654 576 68889998 44 8999999
Q ss_pred CCCCChhhhhcccCCCHHHHHHHHHcC
Q 001014 944 RASRTVPFVSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 944 R~~~s~~~~~~~~G~~l~~~~~~~~lG 970 (1190)
|..+....++.++|+|+.+.+++.+.+
T Consensus 285 r~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 285 TSPTCIREIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp SSCCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHhhCcCHHHHHHHHHHH
Confidence 975555666888999999999988765
No 121
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.81 E-value=2.8e-19 Score=205.19 Aligned_cols=241 Identities=14% Similarity=0.149 Sum_probs=170.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeE--EEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEV--ILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~v--i~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
++|+|+... .+++- +++++|+++|+++ +.++++.... .. . ..+|+
T Consensus 12 m~i~il~~~---------~~~s~-~l~~al~~~G~~v~~~~~d~~~~~~---~~----------~----------~~~d~ 58 (324)
T 1z2n_X 12 VSLFIWLPE---------SKQKT-LFISTKNHTQFELNNIIFDVTLSTE---LP----------D----------KEPNA 58 (324)
T ss_dssp EEEEEECCH---------HHHHH-HBSSCCSEEEEEETTEEEEEEEESS---CC----------S----------SCCSE
T ss_pred EEEEEEEch---------hhhhh-hHHHHHHhcCcEEEEEEecCCCCcc---cc----------C----------CCceE
Confidence 589999743 24444 8889999999999 9998642110 00 0 26899
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHH--cCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH--
Q 001014 171 LLPTMGGQTALNLAVALAESGALEK--YGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANE-- 246 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~--~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~-- 246 (1190)
+++..++..... ...+ ..++. .|+++. ++++++..+.||..++++|+++|+|+|++..+.+.+++.++.+.
T Consensus 59 v~~~~~~~~~~~-~~~l---~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~ 133 (324)
T 1z2n_X 59 IITKRTHPVGKM-ADEM---RKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQ 133 (324)
T ss_dssp EEECCSCSSSHH-HHHH---HHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTC
T ss_pred EEEeccchHHHH-HHHH---HHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcC
Confidence 998877654321 1111 12333 688865 89999999999999999999999999999999999998887766
Q ss_pred cCCCcEEEecCCCCCC---cceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCC-eeeeEEEEEeCCCcEEEEEeeee
Q 001014 247 IGEFPLIIRPAFTLGG---TGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGW-KEYELEVMRDLADNVVIICSIEN 322 (1190)
Q Consensus 247 ig~~PvVVKP~~g~gg---~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~-~E~sv~v~~d~~g~~~~~~~~e~ 322 (1190)
++ ||+|+||..|.|| .|+.++++.++|.. ...++++|+||+|. .++++.++ +|.++.. ...
T Consensus 134 ~~-~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------~~~~~lvqe~i~~~g~~~~v~v~---g~~~~~~--~~~ 198 (324)
T 1z2n_X 134 LI-LPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------IHFPCLCQHYINHNNKIVKVFCI---GNTLKWQ--TRT 198 (324)
T ss_dssp SC-SSEEEEESBCSSSSGGGEEEEECSGGGGTT---------CCSSEEEEECCCCTTCEEEEEEE---TTEEEEE--EEC
T ss_pred CC-CCEEEeeCCCCCCccceeeEEEeCHHHHhh---------cCCCEEEEEccCCCCcEEEEEEE---CCEEEEE--Eec
Confidence 67 9999999999999 99999999988653 14689999999851 45555544 2344333 111
Q ss_pred eCCCCcccc----------------------------------cE------EEEecCCCCCHHHHHHHHHHHHHHHHHhC
Q 001014 323 VDPMGVHTG----------------------------------DS------ITVAPAQTLTDKEYQRLRDYSIAIIREIG 362 (1190)
Q Consensus 323 ~~~~g~~~g----------------------------------~~------~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg 362 (1190)
....++.| +. ....|. .++ .+++++.+.+++++||
T Consensus 199 -~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~i~~~a~~~~~~lg 273 (324)
T 1z2n_X 199 -SLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLN-LTS---EAEMRDLAYKVRCALG 273 (324)
T ss_dssp -CCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTT-SCC---HHHHHHHHHHHHHHHT
T ss_pred -CcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCcccc-CCC---HHHHHHHHHHHHHHhC
Confidence 11111111 00 000111 133 1578999999999999
Q ss_pred CccceEEEEEEEecCCCcEEEEEeCCCCCCc
Q 001014 363 VECGGSNVQFAVNPVDGEVMVIEMNPRVSRS 393 (1190)
Q Consensus 363 ~~~G~~~vef~~~~~~g~~~viEiNpR~~gs 393 (1190)
+ ++++|||++++++|++||+||||+++.+
T Consensus 274 ~--~~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 274 V--QLCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp C--SEEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred C--cEEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 9 4889999998536889999999887654
No 122
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.80 E-value=3.3e-19 Score=204.66 Aligned_cols=243 Identities=18% Similarity=0.194 Sum_probs=170.0
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeE--EEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYET--IMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~v--i~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
.+|+|+.... +++. +++++++++|+++ +.++.+.. .... . .++|.
T Consensus 12 m~i~il~~~~---------~~s~-~l~~al~~~G~~v~~~~~d~~~~-------~~~~-----~-----------~~~d~ 58 (324)
T 1z2n_X 12 VSLFIWLPES---------KQKT-LFISTKNHTQFELNNIIFDVTLS-------TELP-----D-----------KEPNA 58 (324)
T ss_dssp EEEEEECCHH---------HHHH-HBSSCCSEEEEEETTEEEEEEEE-------SSCC-----S-----------SCCSE
T ss_pred EEEEEEEchh---------hhhh-hHHHHHHhcCcEEEEEEecCCCC-------cccc-----C-----------CCceE
Confidence 5799987422 3444 7788999999999 99986421 0000 0 25677
Q ss_pred cccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHH
Q 001014 722 IIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAI 801 (1190)
Q Consensus 722 Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~ 801 (1190)
|+....++.. .+...|+.+..+ ..| +++. ++++++.++.||..++++|+++|||+|++..+.+.+++.++
T Consensus 59 v~~~~~~~~~-~~~~~l~~~~~~-----~~g---~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~ 128 (324)
T 1z2n_X 59 IITKRTHPVG-KMADEMRKYEKD-----HPK---VLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQL 128 (324)
T ss_dssp EEECCSCSSS-HHHHHHHHHHHH-----CTT---SEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHH
T ss_pred EEEeccchHH-HHHHHHHHHHHh-----CCC---CeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHH
Confidence 7776655422 223333311110 167 7754 78999999999999999999999999999999999999888
Q ss_pred HHHh--CCcEEEecCcCCCC---cceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCC-cceEEEeEEecCCCcEEEEe
Q 001014 802 AKEI--GYPVVVRPSYVLGG---RAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSD-AIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 802 ~~~i--gyPvvvKP~~~~gg---~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~-g~E~~v~v~~d~~G~v~~~~ 875 (1190)
+++. +||+|+||..|.|| +|+.++++.++|.. ...++++|+||++ |.+++|.++. |++...
T Consensus 129 ~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------~~~~~lvqe~i~~~g~~~~v~v~g---~~~~~~- 195 (324)
T 1z2n_X 129 LQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------IHFPCLCQHYINHNNKIVKVFCIG---NTLKWQ- 195 (324)
T ss_dssp HHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT---------CCSSEEEEECCCCTTCEEEEEEET---TEEEEE-
T ss_pred HHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh---------cCCCEEEEEccCCCCcEEEEEEEC---CEEEEE-
Confidence 8774 49999999999999 99999999888642 2468999999964 6777776653 244332
Q ss_pred eeeeeeccccccccc------------------------------------c---cccCCCCCCHHHHHHHHHHHHHHHH
Q 001014 876 IMEHIEQAGVHSGDS------------------------------------A---CMIPTKTISSSCLDTISSWTIKLAK 916 (1190)
Q Consensus 876 i~e~~~~~g~~~gd~------------------------------------~---~~~p~~~l~~~~~~~i~~~a~~i~~ 916 (1190)
.... ..+++.|+. . ....+..+++ +++++++.++++
T Consensus 196 ~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~a~~~~~ 270 (324)
T 1z2n_X 196 TRTS--LPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSE---AEMRDLAYKVRC 270 (324)
T ss_dssp EECC--CCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCH---HHHHHHHHHHHH
T ss_pred EecC--cccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccCCCH---HHHHHHHHHHHH
Confidence 1111 111111100 0 0011112332 689999999999
Q ss_pred HcCCCcceeEEEEEe-cCCCEEEEEEccCCCCC
Q 001014 917 RLNVCGLMNCQYAIT-TSGDVYLLEANPRASRT 948 (1190)
Q Consensus 917 ~Lg~~G~~~ief~~d-~~g~~~viEiNpR~~~s 948 (1190)
+||+. .++|||+++ .+|++||+|||||++.+
T Consensus 271 ~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 271 ALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp HHTCS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred HhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 99996 899999997 46889999999999775
No 123
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.76 E-value=3.1e-18 Score=213.17 Aligned_cols=247 Identities=16% Similarity=0.146 Sum_probs=182.3
Q ss_pred CCcHHHHHHHhhhcCCCccccccCCchh-hhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHc
Q 001014 704 PLTVEDVLNVIDLERPEGIIVQFGGQTP-LKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKEL 782 (1190)
Q Consensus 704 p~~~e~v~~i~~~~~~d~Vi~~~g~~~~-~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~ 782 (1190)
+.+.+.+++.|++.++|.+++.-+.... +.....+. | ...| +...+++..++.++.||..++++|+++
T Consensus 432 ~~st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~~-~-------ig~~---~~t~~~s~~aa~~~~DK~~tk~lL~~~ 500 (757)
T 3ln7_A 432 ELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHIE-Y-------VKNG---NMTSHDSYISPLIMENKVVTKKVLQKA 500 (757)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEEE-E-------EETT---TBCSSSBSHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCEEEECCCHHHHHhcccccce-e-------eccC---ccCCCCHHHHHHHhcCHHHHHHHHHHC
Confidence 5678999999999999999865433211 11222222 0 0124 445667889999999999999999999
Q ss_pred CCCCCCceeecCHHHHHHHH-HHhCCcEEEecCcCCCCcceEEe----CCHHHHHHHHHHhHhhCCCCcEEEEEecCCcc
Q 001014 783 SIEQPKGGIAKSEADALAIA-KEIGYPVVVRPSYVLGGRAMEIV----YTDETLVTYLENAVEVDPERPVLIDKYLSDAI 857 (1190)
Q Consensus 783 gIp~p~~~~~~s~~e~~~~~-~~igyPvvvKP~~~~gg~Gv~iv----~~~~el~~~~~~~~~~~~~~~vliEefI~~g~ 857 (1190)
|||+|++..+.+.+++.+++ +.+|||+||||..+++|+||.++ ++.+++.++++.+... +..++||+|| .|+
T Consensus 501 GIPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~--~~~vlVEefI-~G~ 577 (757)
T 3ln7_A 501 GFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE--DKEVMVEDYL-VGT 577 (757)
T ss_dssp TCCCCCEEEESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH--CSSEEEEECC-CSE
T ss_pred CcCCCCEEEECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc--CCcEEEEEcC-CCc
Confidence 99999999999999987776 77999999999999999999999 8999999999887654 4679999999 789
Q ss_pred eEEEeEEecCCCcEEEEeeeeeeec----cccc-----------------cccc---------------------cccc-
Q 001014 858 EIDVDALADSCGNVVIGGIMEHIEQ----AGVH-----------------SGDS---------------------ACMI- 894 (1190)
Q Consensus 858 E~~v~v~~d~~G~v~~~~i~e~~~~----~g~~-----------------~gd~---------------------~~~~- 894 (1190)
|++|.++.+ +++ ++++.... .|.| .+++ .-.+
T Consensus 578 Ei~v~Vlgg---kvv--aai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp 652 (757)
T 3ln7_A 578 EYRFFVLGD---ETL--AVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIP 652 (757)
T ss_dssp EEEEEEETT---EEE--EEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCC
T ss_pred EEEEEEECC---EEE--EEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccC
Confidence 999999853 443 23322211 0100 0000 0000
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec--------CCCEEEEEEccCCCCC
Q 001014 895 ------------------PTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT--------SGDVYLLEANPRASRT 948 (1190)
Q Consensus 895 ------------------p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~--------~g~~~viEiNpR~~~s 948 (1190)
.+..+++++.++++++|.++++++|+ .+++||++.+. .+++.|||+|++++-.
T Consensus 653 ~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl-~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~ 731 (757)
T 3ln7_A 653 AKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGA-AVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMM 731 (757)
T ss_dssp CSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTC-SEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHH
T ss_pred CCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCC-CEEEEEEEecCccccccccCCCeEEEEEcCCcchh
Confidence 11134445667889999999999998 59999999951 2578999999999876
Q ss_pred hhh-hhcccCCCHHHHHHHHHcC
Q 001014 949 VPF-VSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 949 ~~~-~~~~~G~~l~~~~~~~~lG 970 (1190)
.+. -...+|.|+.+..++.+..
T Consensus 732 ~h~~p~~g~~~~v~~~ii~~lfp 754 (757)
T 3ln7_A 732 MHIFPYAGKSRRLTQNVIKMLFP 754 (757)
T ss_dssp HHHSCSSSCCCCCHHHHHHHHCT
T ss_pred hhhccccCCCCchHHHHHHHhcC
Confidence 554 3467899999999887754
No 124
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.75 E-value=2.2e-18 Score=214.59 Aligned_cols=239 Identities=17% Similarity=0.180 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHH--cCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCee
Q 001014 155 TPELVEQVLEKERPDALLPTMGGQTALNLAVALAESGALEK--YGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSG 232 (1190)
Q Consensus 155 ~~~~v~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~--~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~ 232 (1190)
+.+.+.+.+++.++|+++.+-++.....+ . .+.++. .++...|++..++..++||..+|++|+++|||+|++.
T Consensus 434 st~~Iv~~A~~~gid~~vlg~e~~l~~lg-~----~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~ 508 (757)
T 3ln7_A 434 STQALLFDVIQKGIHTEILDENDQFLCLK-Y----GDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSV 508 (757)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTTTEEEEE-E----TTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEE
T ss_pred CHHHHHHHHHHhCCCEEEECCCHHHHHhc-c----cccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEE
Confidence 45789999999999999876653221000 0 001111 2445556788999999999999999999999999999
Q ss_pred ecCCHHHHHHHH-HHcCCCcEEEecCCCCCCcceEEe----CCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEE
Q 001014 233 IGNTLDECISIA-NEIGEFPLIIRPAFTLGGTGGGIA----YNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVM 307 (1190)
Q Consensus 233 ~v~s~~e~~~~~-~~ig~~PvVVKP~~g~gg~Gv~iv----~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~ 307 (1190)
.+.+.+++.+++ +.+| ||+||||..|++|+||.++ ++.+|+.++++.++.. +..++||+||+| +|++|.++
T Consensus 509 ~~~~~~ea~~~~~~~~g-~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~--~~~vlVEefI~G-~Ei~v~Vl 584 (757)
T 3ln7_A 509 EFTSLEKAVASYALFEN-RAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE--DKEVMVEDYLVG-TEYRFFVL 584 (757)
T ss_dssp EESCHHHHHHGGGGSSS-SCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH--CSSEEEEECCCS-EEEEEEEE
T ss_pred EECCHHHHHHHHHHhcC-CCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc--CCcEEEEEcCCC-cEEEEEEE
Confidence 999999987776 7789 9999999999999999999 8999999999887765 468999999999 99999988
Q ss_pred EeCCCcEEEEEeeeee---------------------CCC----------------------------------------
Q 001014 308 RDLADNVVIICSIENV---------------------DPM---------------------------------------- 326 (1190)
Q Consensus 308 ~d~~g~~~~~~~~e~~---------------------~~~---------------------------------------- 326 (1190)
. |.++.. +++. +|.
T Consensus 585 g---gkvvaa--i~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~ 659 (757)
T 3ln7_A 585 G---DETLAV--LLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQ 659 (757)
T ss_dssp T---TEEEEE--EEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEE
T ss_pred C---CEEEEE--EEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEE
Confidence 4 445433 2221 110
Q ss_pred -----CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec-------CCCcEEEEEeCCCCCCch
Q 001014 327 -----GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP-------VDGEVMVIEMNPRVSRSS 394 (1190)
Q Consensus 327 -----g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~-------~~g~~~viEiNpR~~gs~ 394 (1190)
..++|....- .+++...++++.|.++++++|+ .+++||++... +.+++.|||||++++=..
T Consensus 660 L~~~~Nls~GG~~~d-----vtd~i~p~~~~~a~~aa~~lGl--~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~ 732 (757)
T 3ln7_A 660 LRANSNISTGGDSID-----MTDEMHESYKQLAVGITKAMGA--AVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMM 732 (757)
T ss_dssp CCSSCCGGGTCCEEE-----CTTTSCHHHHHHHHHHHHHHTC--SEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHH
T ss_pred eecccccccCcccee-----ccccCCHHHHHHHHHHHHHhCC--CEEEEEEEecCccccccccCCCeEEEEEcCCcchhh
Confidence 1223332221 4455566788999999999999 69999999872 245789999999887544
Q ss_pred HHH-HHHhCCCHHHHHHHHHc
Q 001014 395 ALA-SKATGFPIAKMAAKLSV 414 (1190)
Q Consensus 395 ~l~-~~atG~~l~~~~~~~al 414 (1190)
++. ...+|.|++...++...
T Consensus 733 h~~p~~g~~~~v~~~ii~~lf 753 (757)
T 3ln7_A 733 HIFPYAGKSRRLTQNVIKMLF 753 (757)
T ss_dssp HHSCSSSCCCCCHHHHHHHHC
T ss_pred hhccccCCCCchHHHHHHHhc
Confidence 332 24578999998888754
No 125
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.74 E-value=1.9e-17 Score=206.91 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=151.6
Q ss_pred HHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH-HHcCCCcEEEecCCCCCCcceEEeC---CHHHHHHHHHH
Q 001014 205 LDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIA-NEIGEFPLIIRPAFTLGGTGGGIAY---NKEEFEAICKA 280 (1190)
Q Consensus 205 ~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~-~~ig~~PvVVKP~~g~gg~Gv~iv~---~~~el~~~~~~ 280 (1190)
..++..++||..+|++|+++|||+|++..+.+.+++.+++ +.+| ||+||||..|++|+||.+++ +.+|+.++++.
T Consensus 476 ~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g-~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~ 554 (750)
T 3ln6_A 476 YIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQD-KPIVVKPKSTNFGLGISIFKTSANLASYEKAIDI 554 (750)
T ss_dssp THHHHHTTTSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSSS-SCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC-CcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHH
Confidence 3456777899999999999999999999999999888777 6789 99999999999999999999 99999999998
Q ss_pred HHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEEEEEeee-------------------eeCCC---------------
Q 001014 281 GLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIE-------------------NVDPM--------------- 326 (1190)
Q Consensus 281 ~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~~~~~~e-------------------~~~~~--------------- 326 (1190)
++.. ...++||+||+| +|+++.++. |.++...... +.+|.
T Consensus 555 ~~~~--~~~vlVEefI~G-~E~~v~Vvg---g~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d 628 (750)
T 3ln6_A 555 AFTE--DSAILVEEYIEG-TEYRFFVLE---GDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELG 628 (750)
T ss_dssp HHHH--CSEEEEEECCCS-EEEEEEEET---TEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCC
T ss_pred HHhh--CCcEEEEeccCC-CEEEEEEEC---CEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCcccccccc
Confidence 7765 568999999999 999999884 3444321110 11111
Q ss_pred ------------------------------CcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEec
Q 001014 327 ------------------------------GVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNP 376 (1190)
Q Consensus 327 ------------------------------g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~ 376 (1190)
..++|....- .+++...++.+.|.++++++|+ .+++||++.+.
T Consensus 629 ~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d-----~td~i~p~~~~~a~~aa~~igl--~~~GvDli~~d 701 (750)
T 3ln6_A 629 EVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSID-----VTNTMDPTYKQLAAEMAEAMGA--WVCGVDLIIPN 701 (750)
T ss_dssp HHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEE-----CTTTSCHHHHHHHHHHHHHHTC--SSCEEEEEESC
T ss_pred HHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceee-----ccccCCHHHHHHHHHHHHHhCC--CeEEEEEEecC
Confidence 1223332222 3445566789999999999998 69999999873
Q ss_pred -------CCCcEEEEEeCCCCCCchHHH-HHHhCCCHHHHHHHHH
Q 001014 377 -------VDGEVMVIEMNPRVSRSSALA-SKATGFPIAKMAAKLS 413 (1190)
Q Consensus 377 -------~~g~~~viEiNpR~~gs~~l~-~~atG~~l~~~~~~~a 413 (1190)
+.++++|||||++++=..++. ...+|.|+++..++..
T Consensus 702 i~~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 702 ATQAYSKDKKNATCIELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp SSSCCCTTTTCCEEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred ccccccccCCCeEEEEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 246789999999988755432 4568899999888765
No 126
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.72 E-value=7.8e-17 Score=201.38 Aligned_cols=199 Identities=15% Similarity=0.200 Sum_probs=152.0
Q ss_pred CHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHH-HHhCCcEEEecCcCCCCcceEEeC---CHHHHHHHHHH
Q 001014 762 SPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEADALAIA-KEIGYPVVVRPSYVLGGRAMEIVY---TDETLVTYLEN 837 (1190)
Q Consensus 762 ~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~-~~igyPvvvKP~~~~gg~Gv~iv~---~~~el~~~~~~ 837 (1190)
+..++..++||..++++|+++|||+|++..+.+.+++.+++ +.+|||+||||..+++|+||.+++ +.+++.++++.
T Consensus 475 ~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~ 554 (750)
T 3ln6_A 475 NYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDI 554 (750)
T ss_dssp CTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHH
Confidence 34567777899999999999999999999999999998777 678999999999999999999999 99999999988
Q ss_pred hHhhCCCCcEEEEEecCCcceEEEeEEecCCCcEEEEeeeeeee----ccccc--------------ccc----------
Q 001014 838 AVEVDPERPVLIDKYLSDAIEIDVDALADSCGNVVIGGIMEHIE----QAGVH--------------SGD---------- 889 (1190)
Q Consensus 838 ~~~~~~~~~vliEefI~~g~E~~v~v~~d~~G~v~~~~i~e~~~----~~g~~--------------~gd---------- 889 (1190)
+... ...++||+|| .|+|++|.++.+ +++ ++++.+. ..|.+ .|+
T Consensus 555 ~~~~--~~~vlVEefI-~G~E~~v~Vvgg---~vv--aa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~ 626 (750)
T 3ln6_A 555 AFTE--DSAILVEEYI-EGTEYRFFVLEG---DCI--AVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIE 626 (750)
T ss_dssp HHHH--CSEEEEEECC-CSEEEEEEEETT---EEE--EEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCC
T ss_pred HHhh--CCcEEEEecc-CCCEEEEEEECC---EEE--EEEEEecceEecCCccCHHHHHHhhccCccccccccCcccccc
Confidence 7654 5689999999 699999999854 332 2222221 11100 000
Q ss_pred --------------cccccC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec----
Q 001014 890 --------------SACMIP-------------------TKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT---- 932 (1190)
Q Consensus 890 --------------~~~~~p-------------------~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~---- 932 (1190)
..-.+| +..+++++.+++.+.|.++++++|+. +++||++.+.
T Consensus 627 ~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~ 705 (750)
T 3ln6_A 627 LGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQA 705 (750)
T ss_dssp CCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSC
T ss_pred ccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCcccc
Confidence 000001 11234456678899999999999985 9999999942
Q ss_pred ----CCCEEEEEEccCCCCChhh-hhcccCCCHHHHHHHHHc
Q 001014 933 ----SGDVYLLEANPRASRTVPF-VSKAIGHPLAKYAALVMS 969 (1190)
Q Consensus 933 ----~g~~~viEiNpR~~~s~~~-~~~~~G~~l~~~~~~~~l 969 (1190)
.++++|||||++++-..+. -.+.+|.|+.+..++.+.
T Consensus 706 ~~~~~~~~~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 706 YSKDKKNATCIELNFNPLMYMHTYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp CCTTTTCCEEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHHC
T ss_pred ccccCCCeEEEEEcCCcchhhhcCcccCCCCcHHHHHHHHhC
Confidence 3578999999999987554 457889999999887764
No 127
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.71 E-value=3.2e-16 Score=179.65 Aligned_cols=233 Identities=20% Similarity=0.290 Sum_probs=160.3
Q ss_pred HHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEecCCChhHH--------HHHH-
Q 001014 115 GTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLPTMGGQTAL--------NLAV- 185 (1190)
Q Consensus 115 g~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip~~~g~~~~--------~~~~- 185 (1190)
..+++++|++.|++++.+|.+... . ....+|+|++.+++..++ ...+
T Consensus 35 ~~~l~~al~~~G~~~~~iD~~~~~-------~-----------------~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 35 FQAFAELCRKRGMEVVQLNLSRPI-------E-----------------EQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp HHHHHHHHHTTTCEEEECCTTSCS-------G-----------------GGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEcccccch-------h-----------------hcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 457899999999999999754211 0 013789999998876553 1211
Q ss_pred HHHHhhHHH-HcCCcEeCCcHHHHHHHhcHHHHHHHHHHc-------CCCCCCeeecCCH--HHHHHHH--HHcCCCcEE
Q 001014 186 ALAESGALE-KYGVELIGAKLDAIKKAEDRDLFKQAMKTI-------GVKTPPSGIGNTL--DECISIA--NEIGEFPLI 253 (1190)
Q Consensus 186 ~l~~~~~le-~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~--~e~~~~~--~~ig~~PvV 253 (1190)
.|.+ +.. ..|++++ +++.++..+.||..|.++|.++ |||+|++..+.+. +++.+.. ..++ ||+|
T Consensus 91 ~l~~--~~~~~~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg-~P~V 166 (346)
T 2q7d_A 91 RFQE--YIDAHPETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLT-FPFI 166 (346)
T ss_dssp HHHH--HHHHCTTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCC-SSEE
T ss_pred HHHH--HHHHCCCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCC-CCEE
Confidence 1111 111 2478877 8999999999999999999997 9999999998763 4555544 3578 9999
Q ss_pred EecCCCCC--CcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC--CCeeeeEEEEEeCCCcEEEEEeeeeeCC--CC
Q 001014 254 IRPAFTLG--GTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL--GWKEYELEVMRDLADNVVIICSIENVDP--MG 327 (1190)
Q Consensus 254 VKP~~g~g--g~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~--G~~E~sv~v~~d~~g~~~~~~~~e~~~~--~g 327 (1190)
+||..|.| +.|+.++.+.++|... ...++|||||+ | .++.|.+++ +.++.. ....... .+
T Consensus 167 vKP~~g~Gs~s~~v~~v~~~~~l~~~---------~~~~lvQefI~~~G-~dirv~VvG---~~v~~~-~r~sl~~~~~~ 232 (346)
T 2q7d_A 167 CKTRVAHGTNSHEMAIVFNQEGLNAI---------QPPCVVQNFINHNA-VLYKVFVVG---ESYTVV-QRPSLKNFSAG 232 (346)
T ss_dssp EECSBCSSTTCCEEEEECSGGGTTC-----------CCEEEEECCCCTT-EEEEEEEET---TEEEEE-EEECCCCCC--
T ss_pred EEecCCCcceeeeeEEecCHHHHHhc---------CCCEEEEEeeCCCC-eEEEEEEEC---CEEEEE-EEecCCCcCcC
Confidence 99997643 6699999999988752 35799999997 6 889988873 344432 1111110 01
Q ss_pred -------------cc-cccEEEEec-------CCCCCHHHHHHHHHHHHHHHHHhCCccceEEEEEEEecCCCcEEEEEe
Q 001014 328 -------------VH-TGDSITVAP-------AQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMVIEM 386 (1190)
Q Consensus 328 -------------~~-~g~~~~~~P-------a~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vef~~~~~~g~~~viEi 386 (1190)
++ .|...+..| +. +++ .++++++|.++.++||++ .++||++++..+|++||+||
T Consensus 233 ~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~el~~lA~~a~~alGl~--~~gvDii~~~~~g~~~VlEV 307 (346)
T 2q7d_A 233 TSDRESIFFNSHNVSKPESSSVLTELDKIEGVFE-RPS--DEVIRELSRALRQALGVS--LFGIDIIINNQTGQHAVIDI 307 (346)
T ss_dssp --CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCC-CCC--HHHHHHHHHHHHHHHCCC--EEEEEEEECTTTCCEEEEEE
T ss_pred ccccccccccceeeccCCcccccccccccccccc-CCC--hHHHHHHHHHHHHHhCCc--eEeeEEEeecCCCCEEEEEE
Confidence 11 122111122 22 333 467999999999999994 55799999854578999999
Q ss_pred C--CCCCCch
Q 001014 387 N--PRVSRSS 394 (1190)
Q Consensus 387 N--pR~~gs~ 394 (1190)
| |.+.+..
T Consensus 308 N~~PG~~g~~ 317 (346)
T 2q7d_A 308 NAFPGYEGVS 317 (346)
T ss_dssp EESCCCTTCT
T ss_pred eCCccccccc
Confidence 9 6666543
No 128
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.69 E-value=2.9e-17 Score=179.44 Aligned_cols=172 Identities=20% Similarity=0.208 Sum_probs=134.5
Q ss_pred hccCHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcC-----CCCcceEE-eCCHHHHHHHHHHhHhh
Q 001014 768 AAEDRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYV-----LGGRAMEI-VYTDETLVTYLENAVEV 841 (1190)
Q Consensus 768 ~~~DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~-----~gg~Gv~i-v~~~~el~~~~~~~~~~ 841 (1190)
...||..++++|+++|||+|++..+.+.+++.++++++|||+||||..+ ++|.|+.+ ++|.+|+.++++.+...
T Consensus 18 ~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~ 97 (238)
T 1wr2_A 18 TAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHEN 97 (238)
T ss_dssp CEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999999999998 67788888 79999999999876543
Q ss_pred C-------CCCcEEEEEecCCcceEEEeEEecC-CCcEEEEeeee-eeecccccccccccccCCCCCCHHHHHHHHHHHH
Q 001014 842 D-------PERPVLIDKYLSDAIEIDVDALADS-CGNVVIGGIME-HIEQAGVHSGDSACMIPTKTISSSCLDTISSWTI 912 (1190)
Q Consensus 842 ~-------~~~~vliEefI~~g~E~~v~v~~d~-~G~v~~~~i~e-~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~ 912 (1190)
. ....++||+|++.|+|+.|.++.|. .|.+++++.-. .++. ..+.....|| ++++..+++.+.++
T Consensus 98 ~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~----~~d~~~~~~P--l~~~~~~~~~~~~~ 171 (238)
T 1wr2_A 98 AKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEI----LKDVTFRLVP--ITEKDARKMIQEIK 171 (238)
T ss_dssp HHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHH----HCCCEEEESS--CCHHHHHHHHHTST
T ss_pred hhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeee----ecceeeecCC--CCHHHHHHHHHHHH
Confidence 2 1367999999977999999999997 56666655211 1111 1222233344 89999999999999
Q ss_pred HHHHHcCCCcceeEEE-------------EEecCCC-EEEEEEccCCC
Q 001014 913 KLAKRLNVCGLMNCQY-------------AITTSGD-VYLLEANPRAS 946 (1190)
Q Consensus 913 ~i~~~Lg~~G~~~ief-------------~~d~~g~-~~viEiNpR~~ 946 (1190)
++...+|++|...+|+ +. ..++ ++++||||++-
T Consensus 172 ~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~-~~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 172 AYPILAGARGEEPADIDAIVDMLLKVSKLVD-DLKDYIKEMDLNPVFV 218 (238)
T ss_dssp THHHHHCC--CCCBCHHHHHHHHHHHHHHHH-HTTTTEEEEEEEEEEE
T ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHH-cCCCCeEEEeccCeEE
Confidence 9999999999755542 33 3344 99999999874
No 129
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.67 E-value=1.5e-15 Score=174.18 Aligned_cols=234 Identities=17% Similarity=0.249 Sum_probs=158.5
Q ss_pred HHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchh---------hhhhh
Q 001014 666 CCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTP---------LKLSL 736 (1190)
Q Consensus 666 ~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~---------~~la~ 736 (1190)
...++.++++.|+++..+|.+.. .. ....+|.|++-..+... .....
T Consensus 35 ~~~l~~al~~~G~~~~~iD~~~~-------~~-----------------~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 35 FQAFAELCRKRGMEVVQLNLSRP-------IE-----------------EQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp HHHHHHHHHTTTCEEEECCTTSC-------SG-----------------GGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEcccccc-------hh-----------------hcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 55778999999999999885421 00 01356667666554311 12333
Q ss_pred hHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHc-------CCCCCCceeecCH--HHHHHHHH--Hh
Q 001014 737 PIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKEL-------SIEQPKGGIAKSE--ADALAIAK--EI 805 (1190)
Q Consensus 737 ~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~-------gIp~p~~~~~~s~--~e~~~~~~--~i 805 (1190)
.|.+|..+ ..| ++++ .+++++..+.||..+.++|.++ |||+|++.++.+. +++.+..+ .+
T Consensus 91 ~l~~~~~~-----~~g---v~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~l 161 (346)
T 2q7d_A 91 RFQEYIDA-----HPE---TIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGL 161 (346)
T ss_dssp HHHHHHHH-----CTT---SEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTC
T ss_pred HHHHHHHH-----CCC---eEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCC
Confidence 34333322 357 8777 5999999999999999999998 9999999998763 45555543 47
Q ss_pred CCcEEEecCcCC--CCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC-CcceEEEeEEecCCCcEEEEeeeeeeec
Q 001014 806 GYPVVVRPSYVL--GGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS-DAIEIDVDALADSCGNVVIGGIMEHIEQ 882 (1190)
Q Consensus 806 gyPvvvKP~~~~--gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~-~g~E~~v~v~~d~~G~v~~~~i~e~~~~ 882 (1190)
|||+|+||..+. .|.||.++.+.++|..+ ..+++|||||+ +|.++.|-++.+ +++. ........
T Consensus 162 g~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~---------~~~~lvQefI~~~G~dirv~VvG~---~v~~-~~r~sl~~ 228 (346)
T 2q7d_A 162 TFPFICKTRVAHGTNSHEMAIVFNQEGLNAI---------QPPCVVQNFINHNAVLYKVFVVGE---SYTV-VQRPSLKN 228 (346)
T ss_dssp CSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCEEEEECCCCTTEEEEEEEETT---EEEE-EEEECCCC
T ss_pred CCCEEEEecCCCcceeeeeEEecCHHHHHhc---------CCCEEEEEeeCCCCeEEEEEEECC---EEEE-EEEecCCC
Confidence 899999999764 37799999999988642 35799999995 488999988843 3332 22211110
Q ss_pred --cc-------------cc-ccccccccC------CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEec-CCCEEEE
Q 001014 883 --AG-------------VH-SGDSACMIP------TKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITT-SGDVYLL 939 (1190)
Q Consensus 883 --~g-------------~~-~gd~~~~~p------~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~-~g~~~vi 939 (1190)
.+ ++ .|......| ...+++ .++++++|.++.++||+. .+++|++++. +|++||+
T Consensus 229 ~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~-~~gvDii~~~~~g~~~Vl 305 (346)
T 2q7d_A 229 FSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVS-LFGIDIIINNQTGQHAVI 305 (346)
T ss_dssp CC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCC-EEEEEEEECTTTCCEEEE
T ss_pred cCcCccccccccccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCc-eEeeEEEeecCCCCEEEE
Confidence 00 11 122111112 112232 478999999999999997 5589999974 5889999
Q ss_pred EEccCCCCC
Q 001014 940 EANPRASRT 948 (1190)
Q Consensus 940 EiNpR~~~s 948 (1190)
|||+-++-+
T Consensus 306 EVN~~PG~~ 314 (346)
T 2q7d_A 306 DINAFPGYE 314 (346)
T ss_dssp EEEESCCCT
T ss_pred EEeCCcccc
Confidence 999966543
No 130
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.63 E-value=8e-15 Score=165.76 Aligned_cols=220 Identities=13% Similarity=0.135 Sum_probs=155.4
Q ss_pred CCCEEEecCCChhHH----HHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcH----HHHHHHHHHcCC---CCCCeeecC
Q 001014 167 RPDALLPTMGGQTAL----NLAVALAESGALEKYGVELIGAKLDAIKKAEDR----DLFKQAMKTIGV---KTPPSGIGN 235 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~----~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK----~~~k~~l~~~Gi---pvp~~~~v~ 235 (1190)
.+|++++-.+..... ..++ ...|+..|++++ ++++++..|.|| ..+.+++.++|+ |.++.....
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~v----l~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~ 159 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSL----VIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFP 159 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHH----HHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEES
T ss_pred CCCEEEEeccccccccchhHHHH----HHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecC
Confidence 799999877653210 0111 225888999999 899999999999 667778899998 855544444
Q ss_pred CHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 236 TLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 236 s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
+..+ ..+.+| ||+|+||.+|+.|+|+.+++|.++++..++..... ...+++||||+..+++.+.++. |+++
T Consensus 160 ~~~~---~~~~~g-~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~--~~~~~vQefI~~g~DiRv~VVG---g~vv 230 (344)
T 2p0a_A 160 NHKP---MVTAPH-FPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA--KTYATTEAFIDSKYDIRIQKIG---SNYK 230 (344)
T ss_dssp SSTT---CCCCSS-SSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCCEEEEEEEEEET---TEEE
T ss_pred chhh---hhhccC-CCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeccCCCccEEEEEEC---CEEE
Confidence 4333 344688 99999999999999999999999999888655433 3578899999954667777663 4554
Q ss_pred EEEeeeee--CCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh-CCccceEEEEEEEecCCCcEEEEEeCC--CC
Q 001014 316 IICSIENV--DPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI-GVECGGSNVQFAVNPVDGEVMVIEMNP--RV 390 (1190)
Q Consensus 316 ~~~~~e~~--~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l-g~~~G~~~vef~~~~~~g~~~viEiNp--R~ 390 (1190)
. .+.+. .....+.+. ....+.. ++++ .++++.++.+++ |+ +++.||++.+. +|.++|+|||. .+
T Consensus 231 a--~~R~~~~g~wrtN~~~-~~~e~~~-l~~e----~~~la~~Aa~a~gGl--di~GVDll~~~-~G~~~VlEVN~~~~P 299 (344)
T 2p0a_A 231 A--YMRTSISGNWKANTGS-AMLEQVA-MTER----YRLWVDSCSEMFGGL--DICAVKAVHSK-DGRDYIIEVMDSSMP 299 (344)
T ss_dssp E--EEEEESSSCSSTTSSS-EEEEEEC-CCHH----HHHHHHHHTTGGGCC--SEEEEEEEEET-TSCEEEEEEECTTCC
T ss_pred E--EEEecCCCCCeecCCc-eEEEeeC-CCHH----HHHHHHHHHHHhCCC--CEEEEEEEEcC-CCCEEEEEEcCCCCC
Confidence 2 22221 112223332 3223333 5544 678888999999 67 89999999986 77899999998 44
Q ss_pred CCchHHHHHHhCCCHHHHHHHHH
Q 001014 391 SRSSALASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 391 ~gs~~l~~~atG~~l~~~~~~~a 413 (1190)
+-.. ....++.+++...++..
T Consensus 300 ~~~~--~~~~~~~~Ia~~ii~~i 320 (344)
T 2p0a_A 300 LIGE--HVEEDRQLMADLVVSKM 320 (344)
T ss_dssp CCGG--GHHHHHHHHHHHHHHHH
T ss_pred cccc--hhhhHHHHHHHHHHHHH
Confidence 4321 24567778888888765
No 131
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.63 E-value=3.3e-16 Score=171.07 Aligned_cols=172 Identities=19% Similarity=0.217 Sum_probs=133.2
Q ss_pred HhcHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCC-----CCCcceEE-eCCHHHHHHHHHHHHhc
Q 001014 211 AEDRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFT-----LGGTGGGI-AYNKEEFEAICKAGLAA 284 (1190)
Q Consensus 211 ~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g-----~gg~Gv~i-v~~~~el~~~~~~~~~~ 284 (1190)
..||..+|++|+++|||+|++..+++.+++.++++++| ||+||||..+ +++.|+.+ ++|.+|+.++++.++..
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg-~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~ 97 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIG-YPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHEN 97 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHC-SSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhC-CCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999 9999999998 66778998 79999999999888754
Q ss_pred C-------CCCcEEEeeecCCCeeeeEEEEEeC-CCcEEEEEeeeeeCCCCcccccEEEEecCCCCCHHHHHHHHHHHHH
Q 001014 285 S-------LTSQVLVEKSLLGWKEYELEVMRDL-ADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIA 356 (1190)
Q Consensus 285 ~-------~~~~vlVEe~I~G~~E~sv~v~~d~-~g~~~~~~~~e~~~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~ 356 (1190)
. ....++||+|++|.+|+.+.++.|. .|.+++++ ..-++. ......+... | + ++++..+++.+.+.+
T Consensus 98 ~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~-~Gg~~i-E~~~d~~~~~-~-P-l~~~~~~~~~~~~~~ 172 (238)
T 1wr2_A 98 AKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG-LGGIFV-EILKDVTFRL-V-P-ITEKDARKMIQEIKA 172 (238)
T ss_dssp HHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE-ECSTTH-HHHCCCEEEE-S-S-CCHHHHHHHHHTSTT
T ss_pred hhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEe-cCCcee-eeecceeeec-C-C-CCHHHHHHHHHHHHH
Confidence 2 1368999999995599999999997 45555554 211110 0111122333 3 3 999999999999999
Q ss_pred HHHHhCCccceEEEEE-------------EEecCCCc-EEEEEeCCCCC
Q 001014 357 IIREIGVECGGSNVQF-------------AVNPVDGE-VMVIEMNPRVS 391 (1190)
Q Consensus 357 i~~~lg~~~G~~~vef-------------~~~~~~g~-~~viEiNpR~~ 391 (1190)
+...+|++ |...+|+ +.+ .++ ++++||||++-
T Consensus 173 ~~~~~g~~-G~~~~d~~~l~~~l~~l~~~~~~--~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 173 YPILAGAR-GEEPADIDAIVDMLLKVSKLVDD--LKDYIKEMDLNPVFV 218 (238)
T ss_dssp HHHHHCC---CCCBCHHHHHHHHHHHHHHHHH--TTTTEEEEEEEEEEE
T ss_pred HHHhcCCC-CCChhhHHHHHHHHHHHHHHHHc--CCCCeEEEeccCeEE
Confidence 99999997 9866653 223 344 99999999864
No 132
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.63 E-value=6.6e-15 Score=164.63 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=150.3
Q ss_pred CCCEEEecCCChhH----HHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcH----HHHHHHHHHcCC---CCCCeeecC
Q 001014 167 RPDALLPTMGGQTA----LNLAVALAESGALEKYGVELIGAKLDAIKKAEDR----DLFKQAMKTIGV---KTPPSGIGN 235 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~----~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK----~~~k~~l~~~Gi---pvp~~~~v~ 235 (1190)
.+|++++-.+.... ...++ ...|+..|++++ ++++++..|.|| ..+.++++++|+ |.|+.....
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~v----l~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~ 142 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHL----VIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYP 142 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHH----HHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES
T ss_pred cCCEEEEecccccccccchHHHH----HHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeC
Confidence 68999987654331 00111 225888999999 899999999999 566778889998 855554445
Q ss_pred CHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 236 TLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 236 s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
+..+ ..+.+| ||+|+||..|+.|+|+.+++|.++++..++..... ...+++||||+...++.+.++. |+++
T Consensus 143 ~~~~---~~~~~g-~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~--~~~~~vQefI~~g~DiRv~VvG---g~v~ 213 (309)
T 1i7n_A 143 NHRE---MLTLPT-FPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFIDAKYDIRVQKIG---NNYK 213 (309)
T ss_dssp SGGG---GSSCCC-SSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCCEEEEEEEEEET---TEEE
T ss_pred Chhh---hhhccC-CCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeecCCCceEEEEEEC---CEEE
Confidence 4433 345688 99999999999999999999999999988765544 3578999999954677777663 4554
Q ss_pred EEEeeeee--CCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh-CCccceEEEEEEEecCCCcEEEEEeCC--CC
Q 001014 316 IICSIENV--DPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI-GVECGGSNVQFAVNPVDGEVMVIEMNP--RV 390 (1190)
Q Consensus 316 ~~~~~e~~--~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l-g~~~G~~~vef~~~~~~g~~~viEiNp--R~ 390 (1190)
+.+.+. .....+.+. ....|.+ +++ +.++.|.++.+++ |+ +++.||++.+. +|.++|+|||. -+
T Consensus 214 --a~~Rr~~~g~wrtN~~~-~~~e~~~-l~~----e~~~la~~A~~a~gGl--di~GVDll~~~-~g~~~V~EVN~~~~P 282 (309)
T 1i7n_A 214 --AYMRTSISGNWKTNTGS-AMLEQIA-MSD----RYKLWVDACSEMFGGL--DICAVKAVHGK-DGKDYIFEVMDCSMP 282 (309)
T ss_dssp --EEEEESSCTTTSCSCCC-SSEEEEC-CCH----HHHHHHHHHTTGGGCC--SEEEEEEEEET-TSCEEEEEEECTTCC
T ss_pred --EEEEEcCCCCCeecCCc-ceeeecC-CCH----HHHHHHHHHHHHhCCC--CEEEEEEEEcC-CCCEEEEEECCCCCC
Confidence 222221 112222221 1112222 444 3678888999999 67 99999999986 77899999997 44
Q ss_pred CCchHHHHHHhCCCHHHHHHHH
Q 001014 391 SRSSALASKATGFPIAKMAAKL 412 (1190)
Q Consensus 391 ~gs~~l~~~atG~~l~~~~~~~ 412 (1190)
+-.. ....++.++++.++..
T Consensus 283 ~~~~--~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 283 LIGE--HQVEDRQLITDLVISK 302 (309)
T ss_dssp CCSS--CHHHHHHHHHHHHHHH
T ss_pred Cccc--hhhhhHHHHHHHHHHH
Confidence 4321 1234556677666553
No 133
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.62 E-value=1e-14 Score=167.21 Aligned_cols=220 Identities=13% Similarity=0.142 Sum_probs=152.9
Q ss_pred CCCEEEecCCChhH----HHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcH----HHHHHHHHHcCC---CCCCeeecC
Q 001014 167 RPDALLPTMGGQTA----LNLAVALAESGALEKYGVELIGAKLDAIKKAEDR----DLFKQAMKTIGV---KTPPSGIGN 235 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~----~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK----~~~k~~l~~~Gi---pvp~~~~v~ 235 (1190)
.+|+|++-.+.... ....+ ...|+..|++++ ++++++.+|.|| ..+.++++++|+ |.++...+.
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~v----lr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~ 254 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSL----VIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYP 254 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHH----HHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES
T ss_pred CCCEEEEeccccccccchhHHHH----HHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecC
Confidence 68999987654331 00111 225888999999 899999999999 556677889998 854544444
Q ss_pred CHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCCCeeeeEEEEEeCCCcEE
Q 001014 236 TLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVV 315 (1190)
Q Consensus 236 s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G~~E~sv~v~~d~~g~~~ 315 (1190)
+..+ +.+.+| ||+|+||.+|+.|+||.+++|.++++..++..... ...+++||||+..+++.+.++. |+++
T Consensus 255 ~~~~---~i~~~g-~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~--~~~~~vQEfI~~g~DIRv~VVG---g~vv 325 (422)
T 1pk8_A 255 NHKE---MLSSTT-YPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT--KTYATAEPFIDAKYDVRVQKIG---QNYK 325 (422)
T ss_dssp SGGG---CCCCSS-SSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TSCEEEEECCCEEEEEEEEEET---TEEE
T ss_pred chhh---hhhccC-CCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc--CceEEEEeecCCCceEEEEEEC---CEEE
Confidence 4333 335678 99999999999999999999999999988765544 3578999999954677777663 4554
Q ss_pred EEEeeeee--CCCCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHh-CCccceEEEEEEEecCCCcEEEEEeCC--CC
Q 001014 316 IICSIENV--DPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREI-GVECGGSNVQFAVNPVDGEVMVIEMNP--RV 390 (1190)
Q Consensus 316 ~~~~~e~~--~~~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~l-g~~~G~~~vef~~~~~~g~~~viEiNp--R~ 390 (1190)
+.+.+. ..+..+.+. ....+.. ++++ +++++.++.+++ |+ +++.||++.+. +|.++|+|||. .+
T Consensus 326 --a~~Rr~~~g~WrtNvg~-g~~e~i~-lt~e----~~elA~kAaka~gGl--diaGVDlL~s~-dG~~~VlEVN~s~~P 394 (422)
T 1pk8_A 326 --AYMRTSVSGNWKTNTGS-AMLEQIA-MSDR----YKLWVDTCSEIFGGL--DICAVEALHGK-DGRDHIIEVVGSSMP 394 (422)
T ss_dssp --EEEEEESSSCSSTTSSC-EEEEEEC-CCHH----HHHHHHHHTTGGGCC--SEEEEEEEEET-TSCEEEEEEECTTCC
T ss_pred --EEEEEcCCCCceeccCc-eeeeeeC-CCHH----HHHHHHHHHHHhCCC--CEEEEEEEEcC-CCCEEEEEECCCCCC
Confidence 222221 112223332 2223333 5543 688889999999 67 89999999986 77899999998 43
Q ss_pred CCchHHHHHHhCCCHHHHHHHHH
Q 001014 391 SRSSALASKATGFPIAKMAAKLS 413 (1190)
Q Consensus 391 ~gs~~l~~~atG~~l~~~~~~~a 413 (1190)
.-.. ....++.++++.++...
T Consensus 395 ~~~g--~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 395 LIGD--HQDEDKQLIVELVVNKM 415 (422)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHH
T ss_pred Cccc--hhhhHHHHHHHHHHHHH
Confidence 3221 23456677887777653
No 134
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.59 E-value=1.5e-14 Score=161.80 Aligned_cols=222 Identities=13% Similarity=0.117 Sum_probs=151.1
Q ss_pred cCCCccccccCCch------hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCH----HHHHHHHHHcCC--
Q 001014 717 ERPEGIIVQFGGQT------PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDR----ERFNAIIKELSI-- 784 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~~------~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK----~~~~~~l~~~gI-- 784 (1190)
..+|+|++-.+... -..+...++ ..| ++++ .+++++..|.|| ..+.++++++|+
T Consensus 67 ~~~D~vi~R~~~~~~~~~~~~r~vl~~le----------~~G---vpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~ 132 (309)
T 1i7n_A 67 FRPDFVLIRQHAFGMAENEDFRHLVIGMQ----------YAG---LPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEK 132 (309)
T ss_dssp ECCSEEEECSCCCCSSTTCCCHHHHHHHH----------HTT---CCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTT
T ss_pred ccCCEEEEecccccccccchHHHHHHHHH----------HCC---cccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCC
Confidence 35777776554332 123445566 889 8888 599999999999 667788889999
Q ss_pred -CCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeE
Q 001014 785 -EQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDA 863 (1190)
Q Consensus 785 -p~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v 863 (1190)
|.|+.....+..+ ..+.+|||+|+||..|+.|+||.+++|.+++++.++..... ...+++||||+.|..+.+.+
T Consensus 133 ~P~~~~~~~~~~~~---~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~--~~~~~vQefI~~g~DiRv~V 207 (309)
T 1i7n_A 133 FPLIEQTYYPNHRE---MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFIDAKYDIRVQK 207 (309)
T ss_dssp SCBCCCEEESSGGG---GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCCEEEEEEEEE
T ss_pred CCCCCEEeeCChhh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeecCCCceEEEEE
Confidence 8655544555444 34568999999999999999999999999999888754333 35688999998666777776
Q ss_pred EecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc
Q 001014 864 LADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP 943 (1190)
Q Consensus 864 ~~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp 943 (1190)
+.+ ++. +.+..-....+.+.-......+..+++ +.++++.++++++|--++++||++.+++|.+||+|+|.
T Consensus 208 vGg---~v~--a~~Rr~~~g~wrtN~~~~~~e~~~l~~----e~~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~ 278 (309)
T 1i7n_A 208 IGN---NYK--AYMRTSISGNWKTNTGSAMLEQIAMSD----RYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMD 278 (309)
T ss_dssp ETT---EEE--EEEEESSCTTTSCSCCCSSEEEECCCH----HHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEEC
T ss_pred ECC---EEE--EEEEEcCCCCCeecCCcceeeecCCCH----HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECC
Confidence 643 553 333321111111110001101112343 57788999999994349999999997788899999999
Q ss_pred --CCCCChhhhhcccCCCHHHHHHHHH
Q 001014 944 --RASRTVPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 944 --R~~~s~~~~~~~~G~~l~~~~~~~~ 968 (1190)
-++-.. ....++.++++..+..+
T Consensus 279 ~~~P~~~~--~~~~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 279 CSMPLIGE--HQVEDRQLITDLVISKM 303 (309)
T ss_dssp TTCCCCSS--CHHHHHHHHHHHHHHHH
T ss_pred CCCCCccc--hhhhhHHHHHHHHHHHH
Confidence 666532 23346677777776654
No 135
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.58 E-value=2e-14 Score=164.86 Aligned_cols=218 Identities=12% Similarity=0.108 Sum_probs=151.4
Q ss_pred cCCCccccccCCch------hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCH----HHHHHHHHHcCC--
Q 001014 717 ERPEGIIVQFGGQT------PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDR----ERFNAIIKELSI-- 784 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~~------~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK----~~~~~~l~~~gI-- 784 (1190)
..+|+|++-.+... ...+...++ ..| ++++ .+++++..|.|| ..+..+++++|+
T Consensus 179 ~~~DaviiR~~~~~~~~~~~yr~vlr~lE----------~~G---vpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~ 244 (422)
T 1pk8_A 179 LKPDFVLIRQHAFSMARNGDYRSLVIGLQ----------YAG---IPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEE 244 (422)
T ss_dssp ECCSEEEECSCSBCSSTTCBCHHHHHHHH----------HTT---CCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTT
T ss_pred cCCCEEEEeccccccccchhHHHHHHHHH----------HCC---cccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCC
Confidence 35787776554332 123445566 889 8888 599999999999 566777889999
Q ss_pred -CCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeE
Q 001014 785 -EQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDA 863 (1190)
Q Consensus 785 -p~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v 863 (1190)
|.++.....+..+ .++..|||+|+||..|..|+||.+++|.++++..++..... ...+++||||+.++.+.|.+
T Consensus 245 iP~t~~t~~~~~~~---~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~--~~~~~vQEfI~~g~DIRv~V 319 (422)
T 1pk8_A 245 FPLIDQTFYPNHKE---MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT--KTYATAEPFIDAKYDVRVQK 319 (422)
T ss_dssp SCBCCCEEESSGGG---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TSCEEEEECCCEEEEEEEEE
T ss_pred CCCCceEecCchhh---hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc--CceEEEEeecCCCceEEEEE
Confidence 7545444454443 34568999999999999999999999999999888754333 35688999997666777766
Q ss_pred EecCCCcEEEEeeeeee----ecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEE
Q 001014 864 LADSCGNVVIGGIMEHI----EQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLL 939 (1190)
Q Consensus 864 ~~d~~G~v~~~~i~e~~----~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~vi 939 (1190)
+.+ +++ +.+..- ...+++.+ ....+ .++ ++.++++.++++++|--++++||++.+++|.+||+
T Consensus 320 VGg---~vv--a~~Rr~~~g~WrtNvg~g-~~e~i---~lt----~e~~elA~kAaka~gGldiaGVDlL~s~dG~~~Vl 386 (422)
T 1pk8_A 320 IGQ---NYK--AYMRTSVSGNWKTNTGSA-MLEQI---AMS----DRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHII 386 (422)
T ss_dssp ETT---EEE--EEEEEESSSCSSTTSSCE-EEEEE---CCC----HHHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEE
T ss_pred ECC---EEE--EEEEEcCCCCceeccCce-eeeee---CCC----HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEE
Confidence 643 553 333322 11122111 10112 234 45778899999999434999999999788889999
Q ss_pred EEcc--CCCCChhhhhcccCCCHHHHHHHHH
Q 001014 940 EANP--RASRTVPFVSKAIGHPLAKYAALVM 968 (1190)
Q Consensus 940 EiNp--R~~~s~~~~~~~~G~~l~~~~~~~~ 968 (1190)
|||. .++-.. +...++.++++.+++.+
T Consensus 387 EVN~s~~P~~~g--~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 387 EVVGSSMPLIGD--HQDEDKQLIVELVVNKM 415 (422)
T ss_dssp EEECTTCCCCTT--CHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCccc--hhhhHHHHHHHHHHHHH
Confidence 9999 555432 24456778888887765
No 136
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=161.38 Aligned_cols=223 Identities=12% Similarity=0.122 Sum_probs=154.6
Q ss_pred CCCccccccCCchh------hhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCH----HHHHHHHHHcCC---
Q 001014 718 RPEGIIVQFGGQTP------LKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDR----ERFNAIIKELSI--- 784 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~------~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK----~~~~~~l~~~gI--- 784 (1190)
.+|+|++-.+.... ..+...++ ..| ++++ .+++++..|.|| ..+.+++.++|+
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le----------~~G---vpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~ 150 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQ----------YGG---LPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKF 150 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHH----------HTT---CCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHH----------HCC---ceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCC
Confidence 68888876655321 23344566 889 8888 599999999999 667788899999
Q ss_pred CCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCCcceEEEeEE
Q 001014 785 EQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDAL 864 (1190)
Q Consensus 785 p~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~g~E~~v~v~ 864 (1190)
|.|+.....+..+ ..+.+|||+|+||..|+.|+||.+++|.++++..++..... ...+++||||+.++.+.|.++
T Consensus 151 P~~~~t~~~~~~~---~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~--~~~~~vQefI~~g~DiRv~VV 225 (344)
T 2p0a_A 151 PLVEQTFFPNHKP---MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA--KTYATTEAFIDSKYDIRIQKI 225 (344)
T ss_dssp CBCCCEEESSSTT---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCCEEEEEEEEEE
T ss_pred CCCCEEecCchhh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeccCCCccEEEEEE
Confidence 8555544454433 34568999999999999999999999999999888654332 356889999976666776666
Q ss_pred ecCCCcEEEEeeeeeeecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEecCCCEEEEEEcc-
Q 001014 865 ADSCGNVVIGGIMEHIEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCGLMNCQYAITTSGDVYLLEANP- 943 (1190)
Q Consensus 865 ~d~~G~v~~~~i~e~~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G~~~ief~~d~~g~~~viEiNp- 943 (1190)
.+ +++ +.+..-....+.+.-......+..+++ +.++++.++++++|--++++||++.+++|.+||+|||.
T Consensus 226 Gg---~vv--a~~R~~~~g~wrtN~~~~~~e~~~l~~----e~~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~ 296 (344)
T 2p0a_A 226 GS---NYK--AYMRTSISGNWKANTGSAMLEQVAMTE----RYRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDS 296 (344)
T ss_dssp TT---EEE--EEEEEESSSCSSTTSSSEEEEEECCCH----HHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECT
T ss_pred CC---EEE--EEEEecCCCCCeecCCceEEEeeCCCH----HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCC
Confidence 43 554 233322111111110111111112343 57788899999994349999999997888899999999
Q ss_pred -CCCCChhhhhcccCCCHHHHHHHHHcC
Q 001014 944 -RASRTVPFVSKAIGHPLAKYAALVMSG 970 (1190)
Q Consensus 944 -R~~~s~~~~~~~~G~~l~~~~~~~~lG 970 (1190)
.++-.. +...++.++++..++.+.-
T Consensus 297 ~~P~~~~--~~~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 297 SMPLIGE--HVEEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp TCCCCGG--GHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccc--hhhhHHHHHHHHHHHHHHH
Confidence 555432 3456788999999888754
No 137
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-15 Score=140.49 Aligned_cols=100 Identities=25% Similarity=0.390 Sum_probs=88.2
Q ss_pred HHhhccCHHHHHHHHHHcCCCCCCce--eecCHHHHHHHHHHhCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHh--
Q 001014 765 SIDAAEDRERFNAIIKELSIEQPKGG--IAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVE-- 840 (1190)
Q Consensus 765 ~i~~~~DK~~~~~~l~~~gIp~p~~~--~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~-- 840 (1190)
++.++.||..++++|+++|||+|++. .+.+.+++.++++.+|||+|+||..+++|+|+.+++|.+++.++++.+..
T Consensus 2 a~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~ 81 (108)
T 2cqy_A 2 SSGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEA 81 (108)
T ss_dssp CCCCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998 88999999999999999999999999999999999999999999987542
Q ss_pred --hCCCCcEEEEEecCCcceEEEeEE
Q 001014 841 --VDPERPVLIDKYLSDAIEIDVDAL 864 (1190)
Q Consensus 841 --~~~~~~vliEefI~~g~E~~v~v~ 864 (1190)
..+..+++||+||++..|++|.++
T Consensus 82 ~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 82 ASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred HhhcCCCcEEEeeccCCCcEEEEEec
Confidence 233568999999955569998775
No 138
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-15 Score=141.59 Aligned_cols=99 Identities=24% Similarity=0.262 Sum_probs=87.9
Q ss_pred HHHHhcHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHh--
Q 001014 208 IKKAEDRDLFKQAMKTIGVKTPPSG--IGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLA-- 283 (1190)
Q Consensus 208 i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~-- 283 (1190)
+.++.||..++++|+++|||+|++. .+.+.+++.++++.++ ||+|+||..+.+|.|+.+++|.+|+.+++..+..
T Consensus 3 ~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~-~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~ 81 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIG-YPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEA 81 (108)
T ss_dssp CCCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHC-SSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcC-CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHH
Confidence 3568899999999999999999998 8899999999999999 9999999999999999999999999999987753
Q ss_pred --cCCCCcEEEeeecCCCeeeeEEEE
Q 001014 284 --ASLTSQVLVEKSLLGWKEYELEVM 307 (1190)
Q Consensus 284 --~~~~~~vlVEe~I~G~~E~sv~v~ 307 (1190)
..+...++||+||+|.+|+++.++
T Consensus 82 ~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 82 ASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred HhhcCCCcEEEeeccCCCcEEEEEec
Confidence 223468999999999669988764
No 139
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.47 E-value=8.1e-14 Score=161.54 Aligned_cols=168 Identities=21% Similarity=0.252 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCc-EEEecCcCCCCc----ceEEeCCHHHHHHHHHHhHhhC---
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYP-VVVRPSYVLGGR----AMEIVYTDETLVTYLENAVEVD--- 842 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyP-vvvKP~~~~gg~----Gv~iv~~~~el~~~~~~~~~~~--- 842 (1190)
+++..|++|+++|||+|++..+.+.+++.++++++||| +||||....||+ ||.+++|.+|+.++++++....
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t 83 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVT 83 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECC
T ss_pred CHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhc
Confidence 68899999999999999999999999999999999999 999999875555 9999999999999998865421
Q ss_pred --------CCCcEEEEEecCCcceEEEeEEecCC-C-cEEEEeeee--eeecccccccccccc--c-CCCCCCHHHHHHH
Q 001014 843 --------PERPVLIDKYLSDAIEIDVDALADSC-G-NVVIGGIME--HIEQAGVHSGDSACM--I-PTKTISSSCLDTI 907 (1190)
Q Consensus 843 --------~~~~vliEefI~~g~E~~v~v~~d~~-G-~v~~~~i~e--~~~~~g~~~gd~~~~--~-p~~~l~~~~~~~i 907 (1190)
....++||+|++.++|+.|.+++|+. | .+++++... +++..+.|+++..+. + |...+++.
T Consensus 84 ~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~----- 158 (388)
T 2nu8_B 84 YQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPY----- 158 (388)
T ss_dssp TTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHH-----
T ss_pred cccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHH-----
Confidence 13479999999779999999999975 3 455555333 444444455666665 3 43457773
Q ss_pred HHHHHHHHHHcCCCcc---------eeEEEEEecCCCEEEEEEccCCC
Q 001014 908 SSWTIKLAKRLNVCGL---------MNCQYAITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 908 ~~~a~~i~~~Lg~~G~---------~~ief~~d~~g~~~viEiNpR~~ 946 (1190)
.++++++.||+.|. .++..++ .+.+++++||||+.-
T Consensus 159 --~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~-~~~d~~~lEINPl~~ 203 (388)
T 2nu8_B 159 --QGRELAFKLGLEGKLVQQFTKIFMGLATIF-LERDLALIEINPLVI 203 (388)
T ss_dssp --HHHHHHHHTTCCTHHHHHHHHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HhCCEEEEEecceEE
Confidence 34556666787762 2222222 233799999999864
No 140
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.41 E-value=3.5e-13 Score=156.24 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCC-cEEEecCcCCCC--c---------ceEEeCCHHHHHHHHHHh
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGY-PVVVRPSYVLGG--R---------AMEIVYTDETLVTYLENA 838 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igy-PvvvKP~~~~gg--~---------Gv~iv~~~~el~~~~~~~ 838 (1190)
+.+..|++|+++|||+|++..+.+.+++.++++++|| |+||||....|| + ||.+++|.+|+.++++++
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~ 83 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 83 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999 899999644444 3 399999999999999876
Q ss_pred HhhC--------C---CCcEEEEEecCCcceEEEeEEecCC-C-cEEEEeee--eeeecccccccccccccC---CCCCC
Q 001014 839 VEVD--------P---ERPVLIDKYLSDAIEIDVDALADSC-G-NVVIGGIM--EHIEQAGVHSGDSACMIP---TKTIS 900 (1190)
Q Consensus 839 ~~~~--------~---~~~vliEefI~~g~E~~v~v~~d~~-G-~v~~~~i~--e~~~~~g~~~gd~~~~~p---~~~l~ 900 (1190)
.... . ...++||+|++.++|+.+.+++|+. | .+++++.. -+++..+.|++|.....| ...++
T Consensus 84 l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l~ 163 (395)
T 2fp4_B 84 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIK 163 (395)
T ss_dssp TTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCCC
T ss_pred hhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCCC
Confidence 5332 1 2469999999779999999999975 2 34444422 244554556667666553 34566
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceeEEE----------EEecCCCEEEEEEccCCC
Q 001014 901 SSCLDTISSWTIKLAKRLNVCGLMNCQY----------AITTSGDVYLLEANPRAS 946 (1190)
Q Consensus 901 ~~~~~~i~~~a~~i~~~Lg~~G~~~ief----------~~d~~g~~~viEiNpR~~ 946 (1190)
+ ..++++++.||+.|...-++ +. +.+++++||||+.-
T Consensus 164 ~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~--~~d~~~lEINPl~~ 210 (395)
T 2fp4_B 164 D-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFL--KIDATQVEVNPFGE 210 (395)
T ss_dssp H-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred H-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhh--hCCeEEEEeeeEEE
Confidence 5 45677888888876543333 22 33799999999874
No 141
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.32 E-value=1.4e-12 Score=151.19 Aligned_cols=167 Identities=23% Similarity=0.269 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCc-EEEecCCCCCCc----ceEEeCCHHHHHHHHHHHHhcC--
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFP-LIIRPAFTLGGT----GGGIAYNKEEFEAICKAGLAAS-- 285 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~P-vVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~~~~~-- 285 (1190)
+++..|++|+++|||+|++..+++.+++.++++++| || +||||....||+ ||.+++|.+|+.+++++++...
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG-~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~ 82 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIG-AGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLV 82 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC-SSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhC-CCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhh
Confidence 688999999999999999999999999999999999 99 999999875544 9999999999999999887521
Q ss_pred ---------CCCcEEEeeecCCCeeeeEEEEEeCCCc-EEEEEe-ee--eeCCCCcccccEEE---EecCCCCCHHHHHH
Q 001014 286 ---------LTSQVLVEKSLLGWKEYELEVMRDLADN-VVIICS-IE--NVDPMGVHTGDSIT---VAPAQTLTDKEYQR 349 (1190)
Q Consensus 286 ---------~~~~vlVEe~I~G~~E~sv~v~~d~~g~-~~~~~~-~e--~~~~~g~~~g~~~~---~~Pa~~l~~~~~~~ 349 (1190)
....++||+|+++.+|+.+.+++|.... .+++++ .. .......++++.+. +.|+..+++...
T Consensus 83 t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~a-- 160 (388)
T 2nu8_B 83 TYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG-- 160 (388)
T ss_dssp CTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHHH--
T ss_pred ccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHHH--
Confidence 1357999999995599999999998743 444443 21 11111223334333 456555776653
Q ss_pred HHHHHHHHHHHhCCccceE---------EE-EEEEecCCCcEEEEEeCCCCC
Q 001014 350 LRDYSIAIIREIGVECGGS---------NV-QFAVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 350 l~~~a~~i~~~lg~~~G~~---------~v-ef~~~~~~g~~~viEiNpR~~ 391 (1190)
.++++.+|+. +.. ++ +++.+ . +++++||||++-
T Consensus 161 -----~~~~~~lG~~-~~~~~~~~~~l~~l~~~~~~--~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 161 -----RELAFKLGLE-GKLVQQFTKIFMGLATIFLE--R-DLALIEINPLVI 203 (388)
T ss_dssp -----HHHHHHTTCC-THHHHHHHHHHHHHHHHHHH--T-TEEEEEEEEEEE
T ss_pred -----HHHHHHcCCC-HHHHHHHHHHHHHHHHHHHh--C-CEEEEEecceEE
Confidence 3444455664 421 11 11222 3 699999999754
No 142
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.27 E-value=3.5e-12 Score=137.94 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=137.2
Q ss_pred CCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCeeecCCHH--------
Q 001014 167 RPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPSGIGNTLD-------- 238 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 238 (1190)
-+|.+++.+...++++-++. .++..+ +++-++..+...+.||....++|+++|||+|++..+....
T Consensus 57 ~~d~lisf~s~gfpl~kai~-----y~~lr~-p~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~ 130 (330)
T 3t7a_A 57 LCDCLISFHSKGFPLDKAVA-----YAKLRN-PFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNL 130 (330)
T ss_dssp CCSEEEECCCTTCCHHHHHH-----HHHHHC-CEESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSE
T ss_pred cCCEEEEeccCCCcHHHHHH-----HHHHhC-CceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccce
Confidence 47999998887788876652 344555 4455899999999999999999999999999999887521
Q ss_pred ----HHHH-HHHHcCCCcEEEecCCCC-----------CCcce----EEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-
Q 001014 239 ----ECIS-IANEIGEFPLIIRPAFTL-----------GGTGG----GIAYNKEEFEAICKAGLAASLTSQVLVEKSLL- 297 (1190)
Q Consensus 239 ----e~~~-~~~~ig~~PvVVKP~~g~-----------gg~Gv----~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~- 297 (1190)
+..+ ....++ +|+|+||..|. .|.|. .++.|.+.....- ... .....+|+||||+
T Consensus 131 ~e~~d~i~~~g~~l~-kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~-~~v--r~~~~~i~QEFI~~ 206 (330)
T 3t7a_A 131 IEGEDHVEVNGEVFQ-KPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPE-SNV--RKTGSYIYEEFMPT 206 (330)
T ss_dssp EECSSEEEETTEEEE-SSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESC-CSC--CSSSCEEEEECCCC
T ss_pred eccchhhhhcccccc-CCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChh-hhh--ccCCcEEEEeccCC
Confidence 1111 124578 99999999986 33343 3344433210000 001 2256899999997
Q ss_pred -CCeeeeEEEEEeCCCcEEEEEeeeeeCC-------CCcccccEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccceEE
Q 001014 298 -GWKEYELEVMRDLADNVVIICSIENVDP-------MGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSN 369 (1190)
Q Consensus 298 -G~~E~sv~v~~d~~g~~~~~~~~e~~~~-------~g~~~g~~~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~ 369 (1190)
| +.+.+.+++ ++++.. +++..| ...|.|... .|.. |+++ .+++|.++++++|. ++|+
T Consensus 207 ~G-~DIRv~vVG---~~vv~A--m~R~sp~~~G~~r~N~~gG~~~--~~v~-Lt~e----ek~iA~kaa~a~G~--~v~G 271 (330)
T 3t7a_A 207 DG-TDVKVYTVG---PDYAHA--EARKSPALDGKVERDSEGKEVR--YPVI-LNAR----EKLIAWKVCLAFKQ--TVCG 271 (330)
T ss_dssp SS-EEEEEEEES---TTCEEE--EEEECTTSSCBCCBCTTSCBCC--EECC-CCHH----HHHHHHHHHHHTTB--SEEE
T ss_pred CC-ceEEEEEEC---CEEEEE--EEEeCCCCCCcEEEcCCCCcee--eeec-CCHH----HHHHHHHHHHHhCC--ceEE
Confidence 6 888887775 344433 333333 124434322 3444 7765 47889999999999 8999
Q ss_pred EEEEEecCCCcEEEEEeCCC--CCCchH
Q 001014 370 VQFAVNPVDGEVMVIEMNPR--VSRSSA 395 (1190)
Q Consensus 370 vef~~~~~~g~~~viEiNpR--~~gs~~ 395 (1190)
||++.+ ++++||+|+|.+ +-++..
T Consensus 272 VDlLrs--~~~~~V~EVNg~~fvk~~~~ 297 (330)
T 3t7a_A 272 FDLLRA--NGQSYVCDVNGFSFVKNSMK 297 (330)
T ss_dssp EEEEEE--TTEEEEEEEEESCCCSSCHH
T ss_pred EEEEEE--CCccEEEEeCCCccccCchh
Confidence 999998 678999999944 444443
No 143
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.25 E-value=7.3e-12 Score=145.17 Aligned_cols=167 Identities=18% Similarity=0.225 Sum_probs=120.6
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCC-cEEEecCCCCCC-----------cceEEeCCHHHHHHHHHH
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEF-PLIIRPAFTLGG-----------TGGGIAYNKEEFEAICKA 280 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~-PvVVKP~~g~gg-----------~Gv~iv~~~~el~~~~~~ 280 (1190)
+.+..|++|+++|||+|++..+.+.+++.++++++| | |+||||....|| -||.+++|.+|+.+++++
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~ 82 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLN-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQ 82 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHT-CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcC-CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHH
Confidence 578899999999999999999999999999999999 9 899999654444 348899999999999998
Q ss_pred HHhcC--------C---CCcEEEeeecCCCeeeeEEEEEeCCCc-EEEEEe-ee--eeCCCCcccccEEEEe---cCCCC
Q 001014 281 GLAAS--------L---TSQVLVEKSLLGWKEYELEVMRDLADN-VVIICS-IE--NVDPMGVHTGDSITVA---PAQTL 342 (1190)
Q Consensus 281 ~~~~~--------~---~~~vlVEe~I~G~~E~sv~v~~d~~g~-~~~~~~-~e--~~~~~g~~~g~~~~~~---Pa~~l 342 (1190)
++... + ...++||+|+++.+|+.+.+++|.... .+++++ .. .+...+.++.+.+... |...+
T Consensus 83 ~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l 162 (395)
T 2fp4_B 83 MIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGI 162 (395)
T ss_dssp TTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCC
T ss_pred HhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCC
Confidence 86542 1 247999999995599999999998643 455544 21 1111223445555443 34446
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccceEEEEE----------EEecCCCcEEEEEeCCCCC
Q 001014 343 TDKEYQRLRDYSIAIIREIGVECGGSNVQF----------AVNPVDGEVMVIEMNPRVS 391 (1190)
Q Consensus 343 ~~~~~~~l~~~a~~i~~~lg~~~G~~~vef----------~~~~~~g~~~viEiNpR~~ 391 (1190)
++ ..+.++++.+|+. |...-++ +.+ . +++++||||++-
T Consensus 163 ~~-------~~a~~l~~~lg~~-~~~~~~~~~~l~~l~~l~~~--~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 163 KD-------SQAQRMAENLGFL-GPLQNQAADQIKKLYNLFLK--I-DATQVEVNPFGE 210 (395)
T ss_dssp CH-------HHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHH--T-TEEEEEEEEEEE
T ss_pred CH-------HHHHHHHHHhCcC-HHHHHHHHHHHHHHHHHhhh--C-CeEEEEeeeEEE
Confidence 65 4456667777774 5432222 222 3 699999999864
No 144
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.23 E-value=6.2e-12 Score=135.97 Aligned_cols=199 Identities=12% Similarity=0.149 Sum_probs=130.2
Q ss_pred CCccccccCCchhh-hhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCCceeecCHH-
Q 001014 719 PEGIIVQFGGQTPL-KLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPKGGIAKSEA- 796 (1190)
Q Consensus 719 ~d~Vi~~~g~~~~~-~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~~~~~~s~~- 796 (1190)
+|..|..++.--++ +.....+ ..+ ..++ ++..++.++.||....++|+++|||+|++..+....
T Consensus 58 ~d~lisf~s~gfpl~kai~y~~----------lr~---p~~I-Nd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~ 123 (330)
T 3t7a_A 58 CDCLISFHSKGFPLDKAVAYAK----------LRN---PFVI-NDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPN 123 (330)
T ss_dssp CSEEEECCCTTCCHHHHHHHHH----------HHC---CEES-BCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTT
T ss_pred CCEEEEeccCCCcHHHHHHHHH----------HhC---Ccee-CCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCC
Confidence 56677666644444 4444444 445 4444 699999999999999999999999999998876521
Q ss_pred -----------HHHH-HHHHhCCcEEEecCcCC-----------CC----cceEEeCCHHHHHHHHHHhHhhCCCCcEEE
Q 001014 797 -----------DALA-IAKEIGYPVVVRPSYVL-----------GG----RAMEIVYTDETLVTYLENAVEVDPERPVLI 849 (1190)
Q Consensus 797 -----------e~~~-~~~~igyPvvvKP~~~~-----------gg----~Gv~iv~~~~el~~~~~~~~~~~~~~~vli 849 (1190)
++.+ ..+.+++|+|+||..|. .| +-+..+.|.+...+. +. ....+..+++
T Consensus 124 ~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~--~~-~vr~~~~~i~ 200 (330)
T 3t7a_A 124 NPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSP--ES-NVRKTGSYIY 200 (330)
T ss_dssp BGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEES--CC-SCCSSSCEEE
T ss_pred CccccceeccchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccCh--hh-hhccCCcEEE
Confidence 1111 23457899999999985 22 334455554432000 00 1123568999
Q ss_pred EEecC-CcceEEEeEEecCCCcEEEEeeeee------eecccccccccccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 001014 850 DKYLS-DAIEIDVDALADSCGNVVIGGIMEH------IEQAGVHSGDSACMIPTKTISSSCLDTISSWTIKLAKRLNVCG 922 (1190)
Q Consensus 850 EefI~-~g~E~~v~v~~d~~G~v~~~~i~e~------~~~~g~~~gd~~~~~p~~~l~~~~~~~i~~~a~~i~~~Lg~~G 922 (1190)
||||+ .|+.+.|-++.+ +++ .++... ......|.|...... .+++ +.+++|.++++++|. +
T Consensus 201 QEFI~~~G~DIRv~vVG~---~vv-~Am~R~sp~~~G~~r~N~~gG~~~~~v---~Lt~----eek~iA~kaa~a~G~-~ 268 (330)
T 3t7a_A 201 EEFMPTDGTDVKVYTVGP---DYA-HAEARKSPALDGKVERDSEGKEVRYPV---ILNA----REKLIAWKVCLAFKQ-T 268 (330)
T ss_dssp EECCCCSSEEEEEEEEST---TCE-EEEEEECTTSSCBCCBCTTSCBCCEEC---CCCH----HHHHHHHHHHHHTTB-S
T ss_pred EeccCCCCceEEEEEECC---EEE-EEEEEeCCCCCCcEEEcCCCCceeeee---cCCH----HHHHHHHHHHHHhCC-c
Confidence 99995 477777777765 232 222111 122334544433322 4565 457899999999998 8
Q ss_pred ceeEEEEEecCCCEEEEEEccCCCC
Q 001014 923 LMNCQYAITTSGDVYLLEANPRASR 947 (1190)
Q Consensus 923 ~~~ief~~d~~g~~~viEiNpR~~~ 947 (1190)
+++||++. .++++||+|+|.++.-
T Consensus 269 v~GVDlLr-s~~~~~V~EVNg~~fv 292 (330)
T 3t7a_A 269 VCGFDLLR-ANGQSYVCDVNGFSFV 292 (330)
T ss_dssp EEEEEEEE-ETTEEEEEEEEESCCC
T ss_pred eEEEEEEE-ECCccEEEEeCCCccc
Confidence 99999999 5778999999998644
No 145
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.90 E-value=7.6e-09 Score=120.12 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHcCCCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCc----ceEEeCCHHHHHHHHHHhHhhC----
Q 001014 771 DRERFNAIIKELSIEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGR----AMEIVYTDETLVTYLENAVEVD---- 842 (1190)
Q Consensus 771 DK~~~~~~l~~~gIp~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~----Gv~iv~~~~el~~~~~~~~~~~---- 842 (1190)
+-+..|++|+++|||+|++..+++.+++.++++++|||+|+||....+|+ ||.++.|.+|+.++++++....
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~ 83 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGL 83 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCC
Confidence 34678999999999999999999999999999999999999998865555 9999999999999998865421
Q ss_pred CCCcEEEEEecCCcceEEEeEEecCCC
Q 001014 843 PERPVLIDKYLSDAIEIDVDALADSCG 869 (1190)
Q Consensus 843 ~~~~vliEefI~~g~E~~v~v~~d~~G 869 (1190)
....++||+|++.++|+.+.+++|...
T Consensus 84 ~~~~vlVEe~v~~g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 84 TVKKVLVAEAVDIAKEYYAGLILDRAK 110 (397)
T ss_dssp ECCCEEEEECCCEEEEEEEEEEEETTT
T ss_pred ccceEEEEEeecCCeeEEEEEEecCCC
Confidence 235799999997799999999999753
No 146
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.88 E-value=1e-08 Score=119.07 Aligned_cols=106 Identities=28% Similarity=0.355 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCc----ceEEeCCHHHHHHHHHHHHhcC---
Q 001014 213 DRDLFKQAMKTIGVKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGT----GGGIAYNKEEFEAICKAGLAAS--- 285 (1190)
Q Consensus 213 DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~~~~~--- 285 (1190)
+-+..|++|+++|||+|++..+++.+++.++++++| ||+||||....+|+ ||.+++|.+|+.+++++++...
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG-~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g 82 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFG-KRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKG 82 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHT-SCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcC-CCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccC
Confidence 346789999999999999999999999999999999 99999998855554 9999999999999999987531
Q ss_pred -CCCcEEEeeecCCCeeeeEEEEEeCCCc-EEEEEe
Q 001014 286 -LTSQVLVEKSLLGWKEYELEVMRDLADN-VVIICS 319 (1190)
Q Consensus 286 -~~~~vlVEe~I~G~~E~sv~v~~d~~g~-~~~~~~ 319 (1190)
..+.++||+|+++.+|+.+.+++|.... .+++++
T Consensus 83 ~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s 118 (397)
T 3ufx_B 83 LTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLS 118 (397)
T ss_dssp EECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEE
T ss_pred CccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEe
Confidence 2468999999994499999999998754 555544
No 147
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=98.27 E-value=1.5e-06 Score=97.83 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=85.2
Q ss_pred ceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEecccCCCCcHHh------------H--HHcCc
Q 001014 1043 TVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMHEGRPHAGD------------M--VANGQ 1108 (1190)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~e~~~~~~~------------~--i~~~~ 1108 (1190)
..++|+. ||..+.++++.|.++||+|++|.||+++|++.||+++.|.++. |.|+++| - .+++.
T Consensus 15 ~aliSV~--DK~gl~~~A~~L~~~G~eiisTgGTak~L~~~Gi~v~~Vs~~T-gfPEildGRVKTLHP~ihggiLa~r~~ 91 (464)
T 1zcz_A 15 RILVSLY--EKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTIT-GFENLLGGLVKTLHPEIFAGILGPEPR 91 (464)
T ss_dssp EEEEECS--STGGGHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEGGGGS-CCCCGGGGTTTTCCHHHHHHHHSSSCS
T ss_pred EEEEEec--CccCHHHHHHHHHHCCCEEEECchHHHHHHHCCCceEEHHhhc-CCchhhcCcccccChhheeeeeecCCC
Confidence 4566665 5777999999999999999999999999999999999998874 5677776 3 36669
Q ss_pred EEEEEEc--CCCCCCCCcccHHHHHHHHHCC-CcEEccHHHHHHHHHH
Q 001014 1109 IQMMVIT--SSGDSLDQIDGLKLRRRGLAYK-VPVITTVSGALANAEA 1153 (1190)
Q Consensus 1109 i~lvint--~~~~~~~~~d~~~iRr~A~~~~-ip~~T~~~~a~a~~~a 1153 (1190)
|||||+. |-.. -+.---..||.+|.+|. |.++|+++....+++.
T Consensus 92 IDlVVvNLYPiEn-IDIGGpsmiRaAAKN~~~V~vv~dp~dY~~vl~~ 138 (464)
T 1zcz_A 92 WDVVFVDLYPPPD-IDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEI 138 (464)
T ss_dssp CSEEEECCCCTTC-CCSHHHHHHHHHHHTTTTCEEECSHHHHHHHHHC
T ss_pred ccEEEEcCCchhh-hccccHHHHHHHHHcCCCEEEECCHHHHHHHHHh
Confidence 9999987 4221 11222568999999999 9999999887766654
No 148
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=97.60 E-value=0.00036 Score=81.09 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCC---C---CCCceeecCH---HHHHHHHHHhC-CcEEEecCcCCCC----cceEEeCCHHHHHHHHHHh
Q 001014 773 ERFNAIIKELSI---E---QPKGGIAKSE---ADALAIAKEIG-YPVVVRPSYVLGG----RAMEIVYTDETLVTYLENA 838 (1190)
Q Consensus 773 ~~~~~~l~~~gI---p---~p~~~~~~s~---~e~~~~~~~ig-yPvvvKP~~~~gg----~Gv~iv~~~~el~~~~~~~ 838 (1190)
+.-|++|.++++ | .+++..+++. +++.+.++.+| ||+|+|+....|| -||.+..|.+|+.+++.+.
T Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~m 88 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 566788999998 4 2346666655 88888888998 9999999664333 3799999999999988775
Q ss_pred HhhC--------CCCcEEEEEecCC--cceEEEeEEecCCCcEEEEe
Q 001014 839 VEVD--------PERPVLIDKYLSD--AIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 839 ~~~~--------~~~~vliEefI~~--g~E~~v~v~~d~~G~v~~~~ 875 (1190)
.... .-..++||++++. ++|+-+.+..|..|.+++++
T Consensus 89 l~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (425)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred HhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEE
Confidence 4221 1235899999954 59999999999887666554
No 149
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=97.52 E-value=3.4e-05 Score=89.96 Aligned_cols=115 Identities=22% Similarity=0.341 Sum_probs=82.8
Q ss_pred CCCceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc---C---C-----CCcHHh------
Q 001014 1040 LSGTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH---E---G-----RPHAGD------ 1102 (1190)
Q Consensus 1040 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~---e---~-----~~~~~~------ 1102 (1190)
..|++|+|+.+ |+.+.++++.|.++||+|+||.||+++|+++||+|+.|.|+. | | ||.|.-
T Consensus 4 ~~G~aLISV~D--K~~iv~lAk~L~~lGf~I~ATgGTAk~L~e~GI~v~~V~k~TgfPE~l~GRVKTLHP~ihgGiLar~ 81 (593)
T 1g8m_A 4 RQQLALLSVSE--KAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVKTLHPAVHAGILARN 81 (593)
T ss_dssp CCCEEEEEESC--CTTHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEHHHHHSCCCBGGGTBSSCSHHHHHHHHCCS
T ss_pred CCCEEEEEEeC--cHhHHHHHHHHHHCCCEEEEchHHHHHHHHCCCeEEEeecccCCchhhcCCccccCchhhhhhccCC
Confidence 36889999988 889999999999999999999999999999999999998872 1 2 232211
Q ss_pred ------HHHc---CcEEEEE-EcCC-C----C-CCC------Ccc--cH-HHHHHHHHC-CCcEEccHHHHHHHHHHHHh
Q 001014 1103 ------MVAN---GQIQMMV-ITSS-G----D-SLD------QID--GL-KLRRRGLAY-KVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1103 ------~i~~---~~i~lvi-nt~~-~----~-~~~------~~d--~~-~iRr~A~~~-~ip~~T~~~~a~a~~~al~~ 1156 (1190)
.+++ ..||||| |+.. . + +.+ .-| |- .||-+|-.| .|.++|+++--..+++.|+.
T Consensus 82 ~~~h~~~l~~~~I~~iDlVvvNLYPF~~tva~~~~~~~e~iEnIDIGGptmlRaAAKN~~~V~Vv~dp~dY~~vl~el~~ 161 (593)
T 1g8m_A 82 IPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAA 161 (593)
T ss_dssp SHHHHHHHHHTTCCCEEEEEEECCCHHHHHTSTTCCHHHHHTTCCSHHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCceeEEEEeccCHHHhhccCCCCHHHHHhhCCCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh
Confidence 1333 2489987 4421 0 1 111 122 44 455555554 58899999998888888864
No 150
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=97.47 E-value=0.00047 Score=85.96 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCC------CCCceeecCH---HHHHHHHHHhC-CcEEEecCcCCCCc----ceEEeCCHHHHHHHHHH
Q 001014 772 RERFNAIIKELSIE------QPKGGIAKSE---ADALAIAKEIG-YPVVVRPSYVLGGR----AMEIVYTDETLVTYLEN 837 (1190)
Q Consensus 772 K~~~~~~l~~~gIp------~p~~~~~~s~---~e~~~~~~~ig-yPvvvKP~~~~gg~----Gv~iv~~~~el~~~~~~ 837 (1190)
-+.-|++|.++++| .+++..+++. +++.+.++.+| ||+|||+....||| ||.+..|.+|+.+++.+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~ 87 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHH
Confidence 35678899999998 5677777765 77777777788 99999997665554 78999999999998877
Q ss_pred hHhhCC--------CCcEEEEEecCC--cceEEEeEEecCCCcEEEEe
Q 001014 838 AVEVDP--------ERPVLIDKYLSD--AIEIDVDALADSCGNVVIGG 875 (1190)
Q Consensus 838 ~~~~~~--------~~~vliEefI~~--g~E~~v~v~~d~~G~v~~~~ 875 (1190)
.+.... -..++||++++. ++|+-+.+..|..|.+++++
T Consensus 88 iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEE
Confidence 542211 135899999953 59999999999887666554
No 151
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=97.45 E-value=0.00081 Score=76.59 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=90.4
Q ss_pred hCCcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecC-------CcceEEEeEE--ecCCCcEEEE-
Q 001014 805 IGYPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLS-------DAIEIDVDAL--ADSCGNVVIG- 874 (1190)
Q Consensus 805 igyPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~-------~g~E~~v~v~--~d~~G~v~~~- 874 (1190)
-+.+.|+||..++.|+|+.++.+.+++.+.++. ....++||+||+ +|+-+++.++ ...--+++++
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~-----~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy~y~ 220 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDN-----QGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYR 220 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHH-----HTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEEECS
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhc-----cCCcEEEEecccCceeecCCCceeEEEEEEEEcCCCEEEEEc
Confidence 358899999999999999999999999887764 135799999995 4655554443 3321122211
Q ss_pred ------ee-----------eeeeeccccc---c---c--cccccc---------C---CCCCCHHHHHHHHHHHHHHHHH
Q 001014 875 ------GI-----------MEHIEQAGVH---S---G--DSACMI---------P---TKTISSSCLDTISSWTIKLAKR 917 (1190)
Q Consensus 875 ------~i-----------~e~~~~~g~~---~---g--d~~~~~---------p---~~~l~~~~~~~i~~~a~~i~~~ 917 (1190)
+. .-|+.+..+. + + +....+ - .......+..+|.+++.+.+.+
T Consensus 221 ~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a 300 (380)
T 3tig_A 221 EGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSC 300 (380)
T ss_dssp CCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 10 0122111000 0 0 000000 0 0011234556677766665543
Q ss_pred ----cC-----C--CcceeEEEEEecCCCEEEEEEccCCCCChhhhhcccCCCHHHHHHHHHcCCCCC
Q 001014 918 ----LN-----V--CGLMNCQYAITTSGDVYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLN 974 (1190)
Q Consensus 918 ----Lg-----~--~G~~~ief~~d~~g~~~viEiNpR~~~s~~~~~~~~G~~l~~~~~~~~lG~~l~ 974 (1190)
+. . -.++++||++|.+.++++||||..++-...++ -++.+-++++++..-.+
T Consensus 301 ~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavdp~f~ 363 (380)
T 3tig_A 301 LEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAISSVFP 363 (380)
T ss_dssp HHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTTTTSC
T ss_pred HHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhcccccC
Confidence 21 1 26899999999999999999999988653322 23677777777665444
No 152
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=97.21 E-value=0.00018 Score=82.97 Aligned_cols=113 Identities=26% Similarity=0.322 Sum_probs=76.5
Q ss_pred CceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc---C---C-----CCcHHhH-------
Q 001014 1042 GTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH---E---G-----RPHAGDM------- 1103 (1190)
Q Consensus 1042 g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~---e---~-----~~~~~~~------- 1103 (1190)
.++|+|+. ||..+.+.++.|.++||+|++|.||+++|+++||+++.|.++. | | +|.|.--
T Consensus 25 ~raLISV~--DK~glv~~Ak~L~~lGfeI~ATgGTak~L~e~GI~v~~V~kvTgfPEil~GRVKTLHP~IhgGiLa~r~~ 102 (534)
T 4ehi_A 25 MRALLSVS--DKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSD 102 (534)
T ss_dssp CEEEEEES--SCTTHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEECBCCC---------------------------
T ss_pred cEEEEEEc--ccccHHHHHHHHHHCCCEEEEccHHHHHHHHCCCceeehhhccCCchhhCCccccCChhhhhhhccCCCC
Confidence 46899995 5888999999999999999999999999999999999999873 1 2 2322211
Q ss_pred ------HHc---CcEEEEE-EcCC-C----CCCC------Cc--ccHH-HHHHHHHC-CCcEEccHHHHHHHHHHHHh
Q 001014 1104 ------VAN---GQIQMMV-ITSS-G----DSLD------QI--DGLK-LRRRGLAY-KVPVITTVSGALANAEAIRS 1156 (1190)
Q Consensus 1104 ------i~~---~~i~lvi-nt~~-~----~~~~------~~--d~~~-iRr~A~~~-~ip~~T~~~~a~a~~~al~~ 1156 (1190)
+++ ..||||| |+.. . ++.+ .- -|-. ||-+|-.| .|.++|+++--..+++.|+.
T Consensus 103 ~~h~~~l~~~~I~~iDlVvvNLYPF~~tv~~~~~~~~~iE~IDIGGpsmlRAAAKN~~~V~Vv~dp~dY~~vl~~l~~ 180 (534)
T 4ehi_A 103 ENHIKQAKENEILGIDLVCVNLYPFKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKK 180 (534)
T ss_dssp -----------CEEESEEEEECCCHHHHHHHCCCHHHHHHTSCSSHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCceeEEEEeCcChHHHHhcCCCHHHHHHHhhcCcHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHc
Confidence 222 3388887 4422 1 0110 11 2444 45555543 68899999988888888864
No 153
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=97.13 E-value=0.0051 Score=70.03 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=84.8
Q ss_pred CcEEEecCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecC-------CCe--eeeEEEEEeCCCcEEE----
Q 001014 250 FPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLL-------GWK--EYELEVMRDLADNVVI---- 316 (1190)
Q Consensus 250 ~PvVVKP~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~-------G~~--E~sv~v~~d~~g~~~~---- 316 (1190)
.++|+||..++.|+|+.++++.+++.+.++.. ...++||+||+ +.+ ++.+-++....-.+.+
T Consensus 148 ~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~-----~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~vy~y~~g 222 (380)
T 3tig_A 148 NVWIAKSSSGAKGEGILISSDATELLDFIDNQ-----GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNIYLYREG 222 (380)
T ss_dssp CCEEEEESCC----CCBCCSCSHHHHHHHHHH-----TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCEEECSCC
T ss_pred CeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc-----CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCEEEEEcCC
Confidence 78999999999999999999999998876542 35799999995 224 3344444433112211
Q ss_pred ---EEeeeeeCC-----CCcc-cccEEEE--e-------cCC-----------------CCCHHHHHHHHHHHHHHHHH-
Q 001014 317 ---ICSIENVDP-----MGVH-TGDSITV--A-------PAQ-----------------TLTDKEYQRLRDYSIAIIRE- 360 (1190)
Q Consensus 317 ---~~~~e~~~~-----~g~~-~g~~~~~--~-------Pa~-----------------~l~~~~~~~l~~~a~~i~~~- 360 (1190)
+|+. .++. ...| |..++.- . ... ........+|.+++...+.+
T Consensus 223 ~~Rfa~~-~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~ 301 (380)
T 3tig_A 223 VLRTSSE-PYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCL 301 (380)
T ss_dssp EEEECC-----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHH
T ss_pred EEEecCC-CcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 1211 1111 0001 0000000 0 000 01134456666666655544
Q ss_pred ---hC-----C-ccceEEEEEEEecCCCcEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHcCC
Q 001014 361 ---IG-----V-ECGGSNVQFAVNPVDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGY 416 (1190)
Q Consensus 361 ---lg-----~-~~G~~~vef~~~~~~g~~~viEiNpR~~gs~~l~~~atG~~l~~~~~~~alG~ 416 (1190)
+. . ....+++||++|. +.++++||||..++-...++.. +.+.++++++.-
T Consensus 302 ~~~i~~~~~~~~~FEl~G~D~lid~-~l~~wllEVN~~P~~~q~~i~~-----l~~~~~~iavdp 360 (380)
T 3tig_A 302 EPAISTKYLPYHSFQLFGFDFMVDK-NLKVWLIEVNGAPACAQKLYAE-----LCKGIVDLAISS 360 (380)
T ss_dssp HHHHCCTTSSSEECEEEEEEEEEBT-TCCEEEEEEESSCCCCTTTHHH-----HHHHHHHHTTTT
T ss_pred HHHhhhcccCCceEEEEeEEEEEcC-CCcEEEEEEeCCCCccHHhHHH-----HHHHHHHHhccc
Confidence 21 1 1368999999997 8999999999665544333322 677777777653
No 154
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=97.02 E-value=0.0016 Score=75.70 Aligned_cols=103 Identities=10% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCC---C---CCCeeecCCH---HHHHHHHHHcCCCcEEEecCCCCCCc----ceEEeCCHHHHHHHHHHH
Q 001014 215 DLFKQAMKTIGV---K---TPPSGIGNTL---DECISIANEIGEFPLIIRPAFTLGGT----GGGIAYNKEEFEAICKAG 281 (1190)
Q Consensus 215 ~~~k~~l~~~Gi---p---vp~~~~v~s~---~e~~~~~~~ig~~PvVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~ 281 (1190)
+..|++|.++++ | .+++..+++. +++.+.++.+|+||+|+|+....|++ ||.++.|++|+.+++.++
T Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~m 88 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 456778888888 3 2346666655 77777778887589999997644333 889999999999999887
Q ss_pred HhcC--------CCCcEEEeeecCC--CeeeeEEEEEeCCCcEEEE
Q 001014 282 LAAS--------LTSQVLVEKSLLG--WKEYELEVMRDLADNVVII 317 (1190)
Q Consensus 282 ~~~~--------~~~~vlVEe~I~G--~~E~sv~v~~d~~g~~~~~ 317 (1190)
+... ....++||+.++. .+|+-+.+..|..|.++++
T Consensus 89 l~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~ 134 (425)
T 3mwd_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (425)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred HhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEE
Confidence 6321 1346999999974 3899999999998654444
No 155
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=97.00 E-value=0.00023 Score=82.19 Aligned_cols=112 Identities=25% Similarity=0.326 Sum_probs=79.7
Q ss_pred CceeeecCCCChhHHHHHHHHHHHCCCeeeeccccHHHHHHcCCceEEEeccc---C---C-----CCcHHhH-------
Q 001014 1042 GTVFLSLNDLTKPHLERIAKAFLDIGFKIVSTSGTAHFLELKGIAVERVLKMH---E---G-----RPHAGDM------- 1103 (1190)
Q Consensus 1042 g~~~~~~~~~~~~~~~~~~~~~~~~g~~i~a~~gt~~~l~~~g~~~~~v~~~~---e---~-----~~~~~~~------- 1103 (1190)
.++|+|+. ||..+.++++.|.++||+|++|.||+++|+++||+++.|.++. | | +|.|.--
T Consensus 11 ~~aLISVs--DK~glvelAk~L~~lGfeI~ATgGTak~L~e~GI~v~~V~~vTgfPEil~GRVKTLHP~ihgGiLa~r~~ 88 (523)
T 3zzm_A 11 RRALISVY--DKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLDGRVKTLHPRVHAGLLADLRK 88 (523)
T ss_dssp CEEEEEES--SCTTHHHHHHHHHHTTCEEEECHHHHHHHHTTTCCCEEHHHHHSCCCCTTTTSSSCSHHHHHHHHCCTTS
T ss_pred cEEEEEEe--ccccHHHHHHHHHHCCCEEEEcchHHHHHHHcCCceeeccccCCCchhhCCccccCCchhhhhhccCCCC
Confidence 46999995 5788999999999999999999999999999999999999884 1 2 2322221
Q ss_pred ------HHc---CcEEEEE-EcCC-C----CCCC------Ccc--cHH-HHHHHHHC-CCcEEccHHHHHHHHHHHH
Q 001014 1104 ------VAN---GQIQMMV-ITSS-G----DSLD------QID--GLK-LRRRGLAY-KVPVITTVSGALANAEAIR 1155 (1190)
Q Consensus 1104 ------i~~---~~i~lvi-nt~~-~----~~~~------~~d--~~~-iRr~A~~~-~ip~~T~~~~a~a~~~al~ 1155 (1190)
+++ ..||||| |+.. . ++.+ .-| |-. ||-+|-.| .|.++++++.-..+++.|+
T Consensus 89 ~~h~~~l~~~~i~~iDlVvvNLYPF~~tv~~~~~~~~~iE~IDIGGpsmlRaAAKN~~~V~vv~dp~dY~~vl~~l~ 165 (523)
T 3zzm_A 89 SEHAAALEQLGIEAFELVVVNLYPFSQTVESGASVDDCVEQIDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALR 165 (523)
T ss_dssp HHHHHHHHHHTCCCCSEEEEECCCHHHHHHTTCCHHHHHHTCCSHHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCCceeEEEEeCCChHHHHhcCCCHHHHHHhcccCcHHHHHHHHhcCCCEEEECCHHHHHHHHHHHH
Confidence 221 3489887 5522 1 1111 122 444 55555544 5888999998888888886
No 156
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.0022 Score=79.98 Aligned_cols=104 Identities=10% Similarity=0.031 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCC------CCCeeecCCH---HHHHHHHHHcCCCcEEEecCCCCCCc----ceEEeCCHHHHHHHHHHH
Q 001014 215 DLFKQAMKTIGVK------TPPSGIGNTL---DECISIANEIGEFPLIIRPAFTLGGT----GGGIAYNKEEFEAICKAG 281 (1190)
Q Consensus 215 ~~~k~~l~~~Gip------vp~~~~v~s~---~e~~~~~~~ig~~PvVVKP~~g~gg~----Gv~iv~~~~el~~~~~~~ 281 (1190)
+..|++|.++++| .+++..+++. +++.+.++.+|++|+|||+....|++ ||.++.|++|+.+++.++
T Consensus 9 y~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~i 88 (829)
T 3pff_A 9 QTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPR 88 (829)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHH
Confidence 4567888899888 5677777766 56666666665489999997666554 788999999999999887
Q ss_pred HhcC--------CCCcEEEeeecCC--CeeeeEEEEEeCCCcEEEEE
Q 001014 282 LAAS--------LTSQVLVEKSLLG--WKEYELEVMRDLADNVVIIC 318 (1190)
Q Consensus 282 ~~~~--------~~~~vlVEe~I~G--~~E~sv~v~~d~~g~~~~~~ 318 (1190)
+... ....++||+.++. .+|+-+.+..|..|.+++++
T Consensus 89 Lg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 89 LGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp TTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred HHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEE
Confidence 6431 1356999999964 28999999999986555443
No 157
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.69 E-value=0.03 Score=55.73 Aligned_cols=82 Identities=16% Similarity=0.299 Sum_probs=50.9
Q ss_pred cCCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcceEEE-CCCCHHHHHHH
Q 001014 85 KLGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLADRTYI-TPMTPELVEQV 162 (1190)
Q Consensus 85 ~m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~i-~p~~~~~v~~i 162 (1190)
.||.....++|+|+|+|.+ |..+++.|++.|++|++++.++....... ...-..+. .+.+.+.+.+.
T Consensus 12 ~~~~~~~~~~v~IiG~G~i-----------G~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~ 80 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRL-----------GSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKEC 80 (155)
T ss_dssp -----CCCCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTT
T ss_pred hhhcccCCCcEEEECCCHH-----------HHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHc
Confidence 4777777789999999965 78899999999999999998765432211 11112232 33344443322
Q ss_pred HHHcCCCEEEecCCCh
Q 001014 163 LEKERPDALLPTMGGQ 178 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~g~ 178 (1190)
.-.++|.|+.+.+..
T Consensus 81 -~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 81 -GMEKADMVFAFTNDD 95 (155)
T ss_dssp -TGGGCSEEEECSSCH
T ss_pred -CcccCCEEEEEeCCc
Confidence 124689999887743
No 158
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=95.40 E-value=0.012 Score=57.71 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
.+++|+|+|.|. +| ..+++.|++.|+++++++.+++....-....-..+....+-++++.-+.-.+.|.
T Consensus 6 ~~~~viIiG~G~--~G---------~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 6 ICNHALLVGYGR--VG---------SLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CCSCEEEECCSH--HH---------HHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCCEEEECcCH--HH---------HHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCE
Confidence 457899999988 44 4559999999999999999987543211111112222233334444445567888
Q ss_pred cccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 722 IIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 722 Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
|+...+.. ....++..+. +.+ +....+..+.|.... +.|+++|+.
T Consensus 75 vi~~~~~~~~n~~~~~~a~----------~~~--------~~~~iiar~~~~~~~-~~l~~~G~d 120 (140)
T 3fwz_A 75 LILTIPNGYEAGEIVASAR----------AKN--------PDIEIIARAHYDDEV-AYITERGAN 120 (140)
T ss_dssp EEECCSCHHHHHHHHHHHH----------HHC--------SSSEEEEEESSHHHH-HHHHHTTCS
T ss_pred EEEECCChHHHHHHHHHHH----------HHC--------CCCeEEEEECCHHHH-HHHHHCCCC
Confidence 88777765 3333333333 211 222233455555444 556778765
No 159
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=94.91 E-value=0.029 Score=54.66 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCcceeecCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
.+++|+|+|+|. +|+ .+++.|.+.|+++++++.+++....... -....+.+..+.+.+.+ +...++|
T Consensus 5 ~~~~v~I~G~G~--iG~---------~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~~~~~~d 72 (141)
T 3llv_A 5 GRYEYIVIGSEA--AGV---------GLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-LDLEGVS 72 (141)
T ss_dssp -CCSEEEECCSH--HHH---------HHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-SCCTTCS
T ss_pred CCCEEEEECCCH--HHH---------HHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-CCcccCC
Confidence 356899999987 555 4599999999999999998765322111 11112223334444333 3345678
Q ss_pred ccccccCCc-hhhhhhhhHH
Q 001014 721 GIIVQFGGQ-TPLKLSLPIH 739 (1190)
Q Consensus 721 ~Vi~~~g~~-~~~~la~~l~ 739 (1190)
.|+...+.. ....++..+.
T Consensus 73 ~vi~~~~~~~~n~~~~~~a~ 92 (141)
T 3llv_A 73 AVLITGSDDEFNLKILKALR 92 (141)
T ss_dssp EEEECCSCHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHH
Confidence 888777744 3333444443
No 160
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=94.81 E-value=0.015 Score=67.91 Aligned_cols=115 Identities=21% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
.+.+|+|+|.|. +|+ .+++.|++.|+++++++.+|+.+..........++...+-++++.-+.-.+.+.
T Consensus 3 ~~~~viIiG~Gr--~G~---------~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 3 HGMRVIIAGFGR--FGQ---------ITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp -CCSEEEECCSH--HHH---------HHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CCCeEEEECCCH--HHH---------HHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCE
Confidence 456799999887 555 559999999999999999987654322222233433334445555566678899
Q ss_pred cccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 722 IIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 722 Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
||+..+.. .+..++..+. +.+ |+...+..+.|...... |.++|+..
T Consensus 72 viv~~~~~~~n~~i~~~ar----------~~~--------p~~~Iiara~~~~~~~~-L~~~Gad~ 118 (413)
T 3l9w_A 72 LINAIDDPQTNLQLTEMVK----------EHF--------PHLQIIARARDVDHYIR-LRQAGVEK 118 (413)
T ss_dssp EEECCSSHHHHHHHHHHHH----------HHC--------TTCEEEEEESSHHHHHH-HHHTTCSS
T ss_pred EEECCCChHHHHHHHHHHH----------HhC--------CCCeEEEEECCHHHHHH-HHHCCCCE
Confidence 98888766 4444555544 333 34445556777665544 56788775
No 161
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=94.52 E-value=0.055 Score=50.47 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=57.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCC-CeEEEEccCCCCCCCCcc-CcceEEECCCCHHHHHHHHHHcCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEG-YEVILINSNPATIMTDPG-LADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-~~vi~v~~~~~~~~~~~~-~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
+++|+|+|+|.+ |..+++.|.+.| ++|++++.++........ -.........+.+.+.+.++ ++|
T Consensus 5 ~~~v~I~G~G~i-----------G~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d 71 (118)
T 3ic5_A 5 RWNICVVGAGKI-----------GQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFD 71 (118)
T ss_dssp CEEEEEECCSHH-----------HHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCS
T ss_pred cCeEEEECCCHH-----------HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCC
Confidence 468999999854 789999999999 999999876532110001 11122234446667766654 799
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
.|+.+.+........ ..+.+.|++++
T Consensus 72 ~vi~~~~~~~~~~~~------~~~~~~g~~~~ 97 (118)
T 3ic5_A 72 AVISAAPFFLTPIIA------KAAKAAGAHYF 97 (118)
T ss_dssp EEEECSCGGGHHHHH------HHHHHTTCEEE
T ss_pred EEEECCCchhhHHHH------HHHHHhCCCEE
Confidence 999887644332222 23455677765
No 162
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=94.04 E-value=0.054 Score=52.84 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEEC-CCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYIT-PMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~-p~~~~~v~~i~~~~~~d 169 (1190)
..++|+|+|.|.. |..+++.|++.|++|++++.++..........-..+.. +.+.+.+.+ +.-.+.|
T Consensus 6 ~~~~viIiG~G~~-----------G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~-a~i~~ad 73 (140)
T 3fwz_A 6 ICNHALLVGYGRV-----------GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQL-AHLECAK 73 (140)
T ss_dssp CCSCEEEECCSHH-----------HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHH-TTGGGCS
T ss_pred CCCCEEEECcCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHh-cCcccCC
Confidence 3468999999965 88999999999999999998875322111111123333 334444333 3335789
Q ss_pred EEEecCCCh
Q 001014 170 ALLPTMGGQ 178 (1190)
Q Consensus 170 ~Vip~~~g~ 178 (1190)
+++.+.+..
T Consensus 74 ~vi~~~~~~ 82 (140)
T 3fwz_A 74 WLILTIPNG 82 (140)
T ss_dssp EEEECCSCH
T ss_pred EEEEECCCh
Confidence 888777643
No 163
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=93.75 E-value=0.2 Score=49.62 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccc-cCCccee-ecCCcHHHHHHHhhhcC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDY-DTSDRLY-FEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~-~~ad~~~-~~p~~~e~v~~i~~~~~ 718 (1190)
...++|+|+|+|. +|+ .+++.|++.|++|++++.+++....-. ...-..+ ..+.+.+.+.+ +...+
T Consensus 17 ~~~~~v~IiG~G~--iG~---------~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~-~~~~~ 84 (155)
T 2g1u_A 17 QKSKYIVIFGCGR--LGS---------LIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKE-CGMEK 84 (155)
T ss_dssp CCCCEEEEECCSH--HHH---------HHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHT-TTGGG
T ss_pred cCCCcEEEECCCH--HHH---------HHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHH-cCccc
Confidence 4567999999988 444 559999999999999999876543211 1111122 22333433332 22356
Q ss_pred CCccccccCCch
Q 001014 719 PEGIIVQFGGQT 730 (1190)
Q Consensus 719 ~d~Vi~~~g~~~ 730 (1190)
+|.|+...+...
T Consensus 85 ad~Vi~~~~~~~ 96 (155)
T 2g1u_A 85 ADMVFAFTNDDS 96 (155)
T ss_dssp CSEEEECSSCHH
T ss_pred CCEEEEEeCCcH
Confidence 899988887653
No 164
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=93.64 E-value=0.22 Score=55.64 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred cCCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccCcceEEE-CCCCHHHH
Q 001014 85 KLGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGLADRTYI-TPMTPELV 159 (1190)
Q Consensus 85 ~m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~~i-~p~~~~~v 159 (1190)
+|....|+++|||+|+... -|..++++|.+.|++|++++.++...... ....-..+. +-.+.+.+
T Consensus 4 ~m~~~~m~~~ilVtGatG~----------iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l 73 (318)
T 2r6j_A 4 GMEENGMKSKILIFGGTGY----------IGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKL 73 (318)
T ss_dssp -----CCCCCEEEETTTST----------THHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHH
T ss_pred cccccCCCCeEEEECCCch----------HHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHH
Confidence 4554445568999997432 28899999999999999998766411000 000112233 33467777
Q ss_pred HHHHHHcCCCEEEecCC
Q 001014 160 EQVLEKERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~ 176 (1190)
.+.++ ++|+|+...+
T Consensus 74 ~~a~~--~~d~vi~~a~ 88 (318)
T 2r6j_A 74 VELMK--KVDVVISALA 88 (318)
T ss_dssp HHHHT--TCSEEEECCC
T ss_pred HHHHc--CCCEEEECCc
Confidence 77776 6999997665
No 165
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=93.57 E-value=0.14 Score=53.48 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=82.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEeeccc----cCCCCCCCCcEEEEECCCCcccC
Q 001014 582 FSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSSYDF----ECESAPTQKKKVLILGGGPNRIG 657 (1190)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~~~~----~~~~~~~~~~kVlIlG~G~~rig 657 (1190)
.|-++||+.+|++...||+--.-+ |||- +..|=|..-.- ..-.-....++|+|+|+|. +|
T Consensus 33 isS~ela~~~gv~~~qiRkDls~f-------------g~~G-~~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~--lG 96 (212)
T 3keo_A 33 ASSKQIADALGIDSATVRRDFSYF-------------GELG-RRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGN--IG 96 (212)
T ss_dssp ECHHHHHHHHTSCHHHHHHHHHTT-------------GGGT-TTSSSEEHHHHHHHHHHHTTTTSCEEEEEECCSH--HH
T ss_pred ECHHHHHHHHCCCHHHHHHHHHHH-------------hhcC-CCCCCEEHHHHHHHHHHHhCCCCCCEEEEECcCH--HH
Confidence 477888999999999888755443 5664 55555533211 1111123557999999998 44
Q ss_pred CCcccchhHHHHHHH--HHhCCCeEE-EecCCCC-CcCc-cccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchhh
Q 001014 658 QGIEFDYCCCHTSFS--LQSAGYETI-MMNSNPE-TVST-DYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPL 732 (1190)
Q Consensus 658 ~~~efd~~~~~~~~a--l~~~G~~vi-~v~~~p~-~~s~-~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~ 732 (1190)
+. +++. .++.|++++ ++|.+|. .... . +.. +-. ...+++.+++++.++|.++.+.......
T Consensus 97 ~a---------La~~~~~~~~g~~iVg~~D~dp~~kiG~~~--i~G-vpV--~~~~dL~~~v~~~~Id~vIIAvPs~~aq 162 (212)
T 3keo_A 97 RA---------LLHYRFHDRNKMQISMAFDLDSNDLVGKTT--EDG-IPV--YGISTINDHLIDSDIETAILTVPSTEAQ 162 (212)
T ss_dssp HH---------HTTCCCCTTSSEEEEEEEECTTSTTTTCBC--TTC-CBE--EEGGGHHHHC-CCSCCEEEECSCGGGHH
T ss_pred HH---------HHHhhhcccCCeEEEEEEeCCchhccCcee--ECC-eEE--eCHHHHHHHHHHcCCCEEEEecCchhHH
Confidence 43 3554 345788876 6688887 5544 2 111 111 1368889999999999999888776666
Q ss_pred hhhhhHH
Q 001014 733 KLSLPIH 739 (1190)
Q Consensus 733 ~la~~l~ 739 (1190)
.+++.|.
T Consensus 163 ~v~d~lv 169 (212)
T 3keo_A 163 EVADILV 169 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7888887
No 166
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=93.49 E-value=0.065 Score=51.94 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=44.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCccee-ecCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLY-FEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~-~~p~~~e~v~~i~~~~~~d 720 (1190)
..++|+|+|+|. +|+ .+++.|.+.|+++++++.+++....-.......+ .+..+.+.+.+. ...++|
T Consensus 5 ~~~~v~I~G~G~--iG~---------~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d 72 (144)
T 2hmt_A 5 KNKQFAVIGLGR--FGG---------SIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL-GIRNFE 72 (144)
T ss_dssp -CCSEEEECCSH--HHH---------HHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTT-TGGGCS
T ss_pred cCCcEEEECCCH--HHH---------HHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhc-CCCCCC
Confidence 356899999987 444 5589999999999999987544321111111122 122334433322 234678
Q ss_pred ccccccCCc
Q 001014 721 GIIVQFGGQ 729 (1190)
Q Consensus 721 ~Vi~~~g~~ 729 (1190)
.|+...+..
T Consensus 73 ~vi~~~~~~ 81 (144)
T 2hmt_A 73 YVIVAIGAN 81 (144)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 888777753
No 167
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=93.41 E-value=0.37 Score=51.21 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCC-CeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEG-YEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~ 168 (1190)
++|+|||+|+.. +-|+.+++.|.+.| ++|++++.++..........-..+ .+-.+.+.+.++++ ++
T Consensus 22 ~mk~vlVtGatG----------~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 89 (236)
T 3qvo_A 22 HMKNVLILGAGG----------QIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ--GQ 89 (236)
T ss_dssp CCEEEEEETTTS----------HHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT--TC
T ss_pred cccEEEEEeCCc----------HHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc--CC
Confidence 457999999653 23889999999999 899999877653321111111222 23346777877776 78
Q ss_pred CEEEecCCC
Q 001014 169 DALLPTMGG 177 (1190)
Q Consensus 169 d~Vip~~~g 177 (1190)
|+|+...++
T Consensus 90 D~vv~~a~~ 98 (236)
T 3qvo_A 90 DIVYANLTG 98 (236)
T ss_dssp SEEEEECCS
T ss_pred CEEEEcCCC
Confidence 999976654
No 168
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=93.40 E-value=0.053 Score=52.82 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=47.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
+++|+|+|+|.+ |..+++.|.+.|++|++++.++........ .....+.++.+.+.+.+. .-.++|+
T Consensus 6 ~~~v~I~G~G~i-----------G~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~-~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEAA-----------GVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL-DLEGVSA 73 (141)
T ss_dssp CCSEEEECCSHH-----------HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHS-CCTTCSE
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhC-CcccCCE
Confidence 468999999964 789999999999999999987653211011 111222344455554432 2346898
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+.+.+
T Consensus 74 vi~~~~ 79 (141)
T 3llv_A 74 VLITGS 79 (141)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 887776
No 169
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=93.35 E-value=0.11 Score=50.23 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
+++|+|+|+|.+ |..+++.|.+.|++|++++.++.............+. ...+.+.+.+. .-.++|.
T Consensus 6 ~~~v~I~G~G~i-----------G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~ 73 (144)
T 2hmt_A 6 NKQFAVIGLGRF-----------GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL-GIRNFEY 73 (144)
T ss_dssp CCSEEEECCSHH-----------HHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTT-TGGGCSE
T ss_pred CCcEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhc-CCCCCCE
Confidence 458999999865 7899999999999999998765322111111122333 33344444332 1246899
Q ss_pred EEecCCC
Q 001014 171 LLPTMGG 177 (1190)
Q Consensus 171 Vip~~~g 177 (1190)
|+.+.+.
T Consensus 74 vi~~~~~ 80 (144)
T 2hmt_A 74 VIVAIGA 80 (144)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9988774
No 170
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=93.13 E-value=0.63 Score=47.77 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=48.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~d~V 171 (1190)
|+|||+|+.. +-|+.+++.|.+.|++|++++.++..........-..+ .+..+.+.+.+.++ ++|.|
T Consensus 4 ~~ilVtGatG----------~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~v 71 (206)
T 1hdo_A 4 KKIAIFGATG----------QTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAV 71 (206)
T ss_dssp CEEEEESTTS----------HHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEE
T ss_pred CEEEEEcCCc----------HHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHc--CCCEE
Confidence 5899999843 33889999999999999999877653321101011222 33346677777765 68999
Q ss_pred EecCCC
Q 001014 172 LPTMGG 177 (1190)
Q Consensus 172 ip~~~g 177 (1190)
+...+.
T Consensus 72 i~~a~~ 77 (206)
T 1hdo_A 72 IVLLGT 77 (206)
T ss_dssp EECCCC
T ss_pred EECccC
Confidence 876653
No 171
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=93.07 E-value=0.46 Score=53.66 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=51.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-------cCcceEE-ECCCCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-------GLADRTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-------~~ad~~~-i~p~~~~~v~~i~ 163 (1190)
+++|||+|+.. +-|..+++.|.+.|++|+++..++....... ...-..+ .+-.+.+.+.+++
T Consensus 10 ~~~IlVtGatG----------~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 10 KGRVLIAGATG----------FIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp -CCEEEECTTS----------HHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CCeEEEECCCc----------HHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHH
Confidence 35899999843 3389999999999999999987653211000 0011223 3334778889999
Q ss_pred HHcCCCEEEecCCC
Q 001014 164 EKERPDALLPTMGG 177 (1190)
Q Consensus 164 ~~~~~d~Vip~~~g 177 (1190)
++.++|+|+...+.
T Consensus 80 ~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 80 KEHEIDIVVSTVGG 93 (346)
T ss_dssp HHTTCCEEEECCCG
T ss_pred hhCCCCEEEECCch
Confidence 88899999977664
No 172
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=92.93 E-value=0.14 Score=47.72 Aligned_cols=85 Identities=9% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-CeEEEecCCCCCcCcccc-CCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-YETIMMNSNPETVSTDYD-TSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-~~vi~v~~~p~~~s~~~~-~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
..++|+|+|+|. +|+ .+++.|.+.| +++++++.+++....... -......+..+.+.+.+.++ ++
T Consensus 4 ~~~~v~I~G~G~--iG~---------~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~ 70 (118)
T 3ic5_A 4 MRWNICVVGAGK--IGQ---------MIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GF 70 (118)
T ss_dssp TCEEEEEECCSH--HHH---------HHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TC
T ss_pred CcCeEEEECCCH--HHH---------HHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CC
Confidence 357899999977 555 4588999999 999999987654321100 01111223334566666653 78
Q ss_pred CccccccCCchhhhhhhhHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIH 739 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~ 739 (1190)
|.|+...+......++..+.
T Consensus 71 d~vi~~~~~~~~~~~~~~~~ 90 (118)
T 3ic5_A 71 DAVISAAPFFLTPIIAKAAK 90 (118)
T ss_dssp SEEEECSCGGGHHHHHHHHH
T ss_pred CEEEECCCchhhHHHHHHHH
Confidence 98888776665556666666
No 173
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=92.74 E-value=0.19 Score=52.70 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=81.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEee---ccc-cCCCCCCCCcEEEEECCCCcccC
Q 001014 582 FSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSS---YDF-ECESAPTQKKKVLILGGGPNRIG 657 (1190)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~---~~~-~~~~~~~~~~kVlIlG~G~~rig 657 (1190)
.|-++||+.+|++...||+-..-+|.. ....|-|.. |.. ..........+|+|+|+|. +|
T Consensus 29 iss~~l~~~~~~~~~~iRkdls~~g~~--------------G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGaG~--~G 92 (211)
T 2dt5_A 29 TSSEQLGGLAQVTAFQVRKDLSYFGSY--------------GTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGR--LG 92 (211)
T ss_dssp ECHHHHHHHHTSCHHHHHHHHHHTTCC--------------CCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECCSH--HH
T ss_pred ECHHHHHHHhCCCHHHeechHHHHHHh--------------cCCceeEEhHHHHHHHHHHhCcCCCCEEEEECccH--HH
Confidence 477889999999999999877776533 356666654 221 1111123457899999998 34
Q ss_pred CCcccchhHHHHHHH--HHhCCCeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchhhhh
Q 001014 658 QGIEFDYCCCHTSFS--LQSAGYETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKL 734 (1190)
Q Consensus 658 ~~~efd~~~~~~~~a--l~~~G~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~l 734 (1190)
+ ..++. ... |++++ ++|.+|+...... ...-. ...+++.+++++ ++|.|+.+........+
T Consensus 93 ~---------~la~~~~~~~-g~~iVg~~D~dp~k~g~~i---~gv~V--~~~~dl~ell~~-~ID~ViIA~Ps~~~~ei 156 (211)
T 2dt5_A 93 S---------ALADYPGFGE-SFELRGFFDVDPEKVGRPV---RGGVI--EHVDLLPQRVPG-RIEIALLTVPREAAQKA 156 (211)
T ss_dssp H---------HHHHCSCCCS-SEEEEEEEESCTTTTTCEE---TTEEE--EEGGGHHHHSTT-TCCEEEECSCHHHHHHH
T ss_pred H---------HHHHhHhhcC-CcEEEEEEeCCHHHHhhhh---cCCee--ecHHhHHHHHHc-CCCEEEEeCCchhHHHH
Confidence 4 33543 233 88866 5677776554321 11111 126678888888 99999988876666677
Q ss_pred hhhHH
Q 001014 735 SLPIH 739 (1190)
Q Consensus 735 a~~l~ 739 (1190)
+..+.
T Consensus 157 ~~~l~ 161 (211)
T 2dt5_A 157 ADLLV 161 (211)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77777
No 174
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=91.86 E-value=0.42 Score=45.82 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=43.7
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccc-cCCcceee-cCCcHHHHHHHhhhcCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDY-DTSDRLYF-EPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~-~~ad~~~~-~p~~~e~v~~i~~~~~~d 720 (1190)
..+|+|+|+|. + +..+++.|.+.|+++++++.+++....-. ...-..+. +..+.+.+.+. ...++|
T Consensus 4 ~m~i~IiG~G~--i---------G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d 71 (140)
T 1lss_A 4 GMYIIIAGIGR--V---------GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA-GIEDAD 71 (140)
T ss_dssp -CEEEEECCSH--H---------HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT-TTTTCS
T ss_pred CCEEEEECCCH--H---------HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc-CcccCC
Confidence 35899999987 4 44558999999999999998765432110 00111121 22334433322 234678
Q ss_pred ccccccCCc
Q 001014 721 GIIVQFGGQ 729 (1190)
Q Consensus 721 ~Vi~~~g~~ 729 (1190)
.|+...+..
T Consensus 72 ~vi~~~~~~ 80 (140)
T 1lss_A 72 MYIAVTGKE 80 (140)
T ss_dssp EEEECCSCH
T ss_pred EEEEeeCCc
Confidence 888776654
No 175
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=91.82 E-value=1.1 Score=46.68 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHH-HCCCeEEEEccCCC-CCCC---CccCcceEE-ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALK-EEGYEVILINSNPA-TIMT---DPGLADRTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~-~~G~~vi~v~~~~~-~~~~---~~~~ad~~~-i~p~~~~~v~~i~~~ 165 (1190)
+|+|||+|+.. +-|+.+++.|. +.|++|++++.++. .... ...-. ..+ .+-.+.+.+.+.++
T Consensus 5 mk~vlVtGasg----------~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~D~~d~~~~~~~~~- 72 (221)
T 3r6d_A 5 YXYITILGAAG----------QIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERV-TVIEGSFQNPGXLEQAVT- 72 (221)
T ss_dssp CSEEEEESTTS----------HHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTE-EEEECCTTCHHHHHHHHT-
T ss_pred EEEEEEEeCCc----------HHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCce-EEEECCCCCHHHHHHHHc-
Confidence 45799999643 23889999999 89999999987754 2211 01111 222 33346777777775
Q ss_pred cCCCEEEecCCC
Q 001014 166 ERPDALLPTMGG 177 (1190)
Q Consensus 166 ~~~d~Vip~~~g 177 (1190)
++|+|+...+.
T Consensus 73 -~~d~vv~~ag~ 83 (221)
T 3r6d_A 73 -NAEVVFVGAME 83 (221)
T ss_dssp -TCSEEEESCCC
T ss_pred -CCCEEEEcCCC
Confidence 79999987764
No 176
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=91.73 E-value=0.1 Score=51.55 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=50.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC----CcCccccCCccee-ecCCcHHHHHHHhhhc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE----TVSTDYDTSDRLY-FEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~----~~s~~~~~ad~~~-~~p~~~e~v~~i~~~~ 717 (1190)
+++|+|+|+|. + +..+++.|.+.|+++++++.++. .........-..+ .++.+.+.+ .-+.-.
T Consensus 3 ~~~vlI~G~G~--v---------G~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l-~~a~i~ 70 (153)
T 1id1_A 3 KDHFIVCGHSI--L---------AINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVL-KKAGID 70 (153)
T ss_dssp CSCEEEECCSH--H---------HHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHH-HHHTTT
T ss_pred CCcEEEECCCH--H---------HHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHH-HHcChh
Confidence 57899999887 4 44559999999999999998752 1111100001122 233444443 333345
Q ss_pred CCCccccccCCc-hhhhhhhhHH
Q 001014 718 RPEGIIVQFGGQ-TPLKLSLPIH 739 (1190)
Q Consensus 718 ~~d~Vi~~~g~~-~~~~la~~l~ 739 (1190)
+.|.|+...+.. .+..++..+.
T Consensus 71 ~ad~vi~~~~~d~~n~~~~~~a~ 93 (153)
T 1id1_A 71 RCRAILALSDNDADNAFVVLSAK 93 (153)
T ss_dssp TCSEEEECSSCHHHHHHHHHHHH
T ss_pred hCCEEEEecCChHHHHHHHHHHH
Confidence 788888877765 3434444433
No 177
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=91.46 E-value=0.22 Score=57.97 Aligned_cols=113 Identities=18% Similarity=0.334 Sum_probs=66.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECC-CCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITP-MTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p-~~~~~v~~i~~~~~~d~V 171 (1190)
++|+|+|.|.. |..+++.|++.|++|++++.++............++... .+.+. ++-+.-.+.|+|
T Consensus 5 ~~viIiG~Gr~-----------G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~-L~~agi~~A~~v 72 (413)
T 3l9w_A 5 MRVIIAGFGRF-----------GQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDL-LESAGAAKAEVL 72 (413)
T ss_dssp CSEEEECCSHH-----------HHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHH-HHHTTTTTCSEE
T ss_pred CeEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHH-HHhcCCCccCEE
Confidence 47999999964 889999999999999999988764321112222334443 44444 433444578999
Q ss_pred EecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCC
Q 001014 172 LPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKT 228 (1190)
Q Consensus 172 ip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipv 228 (1190)
+.+.+... .+..+ ...+..++. ....+..+.|..... .|.++|+..
T Consensus 73 iv~~~~~~-~n~~i----~~~ar~~~p-----~~~Iiara~~~~~~~-~L~~~Gad~ 118 (413)
T 3l9w_A 73 INAIDDPQ-TNLQL----TEMVKEHFP-----HLQIIARARDVDHYI-RLRQAGVEK 118 (413)
T ss_dssp EECCSSHH-HHHHH----HHHHHHHCT-----TCEEEEEESSHHHHH-HHHHTTCSS
T ss_pred EECCCChH-HHHHH----HHHHHHhCC-----CCeEEEEECCHHHHH-HHHHCCCCE
Confidence 98887532 22222 112333332 222234555555444 456788764
No 178
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=91.24 E-value=0.41 Score=46.35 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEE-ecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIM-MNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~-v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
++++|+|+|+|.. +..+++.+++. ||+++. ++.++...... +...-++ ..+++.+++++.++
T Consensus 3 ~~~~vlIiGaG~~-----------g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~--i~g~pV~---g~~~l~~~~~~~~i 66 (141)
T 3nkl_A 3 AKKKVLIYGAGSA-----------GLQLANMLRQGKEFHPIAFIDDDRKKHKTT--MQGITIY---RPKYLERLIKKHCI 66 (141)
T ss_dssp CCEEEEEECCSHH-----------HHHHHHHHHHSSSEEEEEEECSCGGGTTCE--ETTEEEE---CGGGHHHHHHHHTC
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHhCCCcEEEEEEECCcccCCCE--ecCeEEE---CHHHHHHHHHHCCC
Confidence 5679999999985 66678888764 898774 45554332211 1111111 15678888889999
Q ss_pred CccccccCCchh---hhhhhhHH
Q 001014 720 EGIIVQFGGQTP---LKLSLPIH 739 (1190)
Q Consensus 720 d~Vi~~~g~~~~---~~la~~l~ 739 (1190)
|.|++..+.... ..+...+.
T Consensus 67 d~viia~~~~~~~~~~~i~~~l~ 89 (141)
T 3nkl_A 67 STVLLAVPSASQVQKKVIIESLA 89 (141)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 988877764432 35666666
No 179
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.08 E-value=0.11 Score=53.05 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEEecCCCCCcCccccC-CcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIMMNSNPETVSTDYDT-SDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~v~~~p~~~s~~~~~-ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
.+++|+|+|.|. +|+ .+++.|++. |++|++++.+++....-... ....+.+..+.+.+.+.....++
T Consensus 38 ~~~~v~IiG~G~--~G~---------~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 38 GHAQVLILGMGR--IGT---------GAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TTCSEEEECCSH--HHH---------HHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCCcEEEECCCH--HHH---------HHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCC
Confidence 356899999987 444 559999999 99999999987643221111 11112233334333322023467
Q ss_pred CccccccCCc
Q 001014 720 EGIIVQFGGQ 729 (1190)
Q Consensus 720 d~Vi~~~g~~ 729 (1190)
|.|+...+..
T Consensus 107 d~vi~~~~~~ 116 (183)
T 3c85_A 107 KLVLLAMPHH 116 (183)
T ss_dssp CEEEECCSSH
T ss_pred CEEEEeCCCh
Confidence 8888766654
No 180
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=90.55 E-value=0.42 Score=47.10 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=47.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC----CCCCCccCcceEEE-CCCCHHHHHHHHHHcC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA----TIMTDPGLADRTYI-TPMTPELVEQVLEKER 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~----~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~ 167 (1190)
++|+|+|+|.. |..+++.|.+.|++|++++.++. .........-..+. ++.+.+.+.+. .-.+
T Consensus 4 ~~vlI~G~G~v-----------G~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~ 71 (153)
T 1id1_A 4 DHFIVCGHSIL-----------AINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA-GIDR 71 (153)
T ss_dssp SCEEEECCSHH-----------HHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH-TTTT
T ss_pred CcEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc-Chhh
Confidence 58999999964 88999999999999999998642 11000000112333 34455544432 2347
Q ss_pred CCEEEecCCCh
Q 001014 168 PDALLPTMGGQ 178 (1190)
Q Consensus 168 ~d~Vip~~~g~ 178 (1190)
.|.|+.+.+..
T Consensus 72 ad~vi~~~~~d 82 (153)
T 1id1_A 72 CRAILALSDND 82 (153)
T ss_dssp CSEEEECSSCH
T ss_pred CCEEEEecCCh
Confidence 89999887643
No 181
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=90.26 E-value=0.91 Score=50.81 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCcc-eEEE-CCCCHHHHHHHHHHcC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLAD-RTYI-TPMTPELVEQVLEKER 167 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~ad-~~~i-~p~~~~~v~~i~~~~~ 167 (1190)
..|+|||+|+.. +-|..+++.|.+.|++|++++.++..... ...... ..+. +-.+.+.+.+++++.+
T Consensus 19 ~~~~vlVTGasG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~ 88 (330)
T 2pzm_A 19 SHMRILITGGAG----------CLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFK 88 (330)
T ss_dssp TCCEEEEETTTS----------HHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCC----------HHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcC
Confidence 456999999853 33889999999999999999875432110 011111 2222 3346677888877668
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|+|+-..+
T Consensus 89 ~D~vih~A~ 97 (330)
T 2pzm_A 89 PTHVVHSAA 97 (330)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 999996654
No 182
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=90.21 E-value=0.57 Score=49.18 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=49.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
+++|||+|+.. +-|+.+++.|.+.|++|++++.++........ .-..+. +-.+.+.+.+.++ ++|+
T Consensus 4 m~~ilItGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~--~~d~ 70 (227)
T 3dhn_A 4 VKKIVLIGASG----------FVGSALLNEALNRGFEVTAVVRHPEKIKIENE-HLKVKKADVSSLDEVCEVCK--GADA 70 (227)
T ss_dssp CCEEEEETCCH----------HHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT-TEEEECCCTTCHHHHHHHHT--TCSE
T ss_pred CCEEEEEcCCc----------hHHHHHHHHHHHCCCEEEEEEcCcccchhccC-ceEEEEecCCCHHHHHHHhc--CCCE
Confidence 46999999753 33899999999999999999887653321111 112222 3336777887776 7999
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+-..+
T Consensus 71 vi~~a~ 76 (227)
T 3dhn_A 71 VISAFN 76 (227)
T ss_dssp EEECCC
T ss_pred EEEeCc
Confidence 997665
No 183
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=90.20 E-value=0.29 Score=51.37 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=70.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCcceEEEccCCCCccCCCCCceEee---ccc-cCCCCCCCCcEEEEECCCCcccC
Q 001014 582 FSDKQIAFATKSTEKEVREKRLSLGVIPSYKRVDTCAAEFEANTPYMYSS---YDF-ECESAPTQKKKVLILGGGPNRIG 657 (1190)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~a~e~~~~~~~~y~~---~~~-~~~~~~~~~~kVlIlG~G~~rig 657 (1190)
.|-++||+.+|++...||+-..-+| +| ....|-|.. |.. ....-.....+|+|+|+|. +|
T Consensus 34 iss~~l~~~~~~~~~~iRkdls~fg-------------~~-G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGAG~--~G 97 (215)
T 2vt3_A 34 VSSAELSDAVKVDSATIRRDFSYFG-------------AL-GKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGN--LG 97 (215)
T ss_dssp ECHHHHHHHHCCCHHHHHHHHHHTT-------------CC-C-----EEHHHHHHHHHHHHHHC---CEEEECCSH--HH
T ss_pred ECHHHHHHHhCCCHHHeechHHHHH-------------Hh-cCCcceEEhHHHHHHHHHHhCcCCCCEEEEEccCH--HH
Confidence 4778899999999999998777664 33 255566654 211 0000113446899999998 44
Q ss_pred CCcccchhHHHHHHH--HHhCCCeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccccccCCchhhhh
Q 001014 658 QGIEFDYCCCHTSFS--LQSAGYETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGIIVQFGGQTPLKL 734 (1190)
Q Consensus 658 ~~~efd~~~~~~~~a--l~~~G~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi~~~g~~~~~~l 734 (1190)
+ ..++. ....|++++ ++|.+|+...... ..+-. ...+++.+++++. |.|+..........+
T Consensus 98 ~---------~La~~~~~~~~g~~iVg~~D~dp~k~g~~i---~gv~V--~~~~dl~eli~~~--D~ViIAvPs~~~~ei 161 (215)
T 2vt3_A 98 T---------AFLHYNFTKNNNTKISMAFDINESKIGTEV---GGVPV--YNLDDLEQHVKDE--SVAILTVPAVAAQSI 161 (215)
T ss_dssp H---------HHHHCC------CCEEEEEESCTTTTTCEE---TTEEE--EEGGGHHHHCSSC--CEEEECSCHHHHHHH
T ss_pred H---------HHHHHHhcccCCcEEEEEEeCCHHHHHhHh---cCCee--echhhHHHHHHhC--CEEEEecCchhHHHH
Confidence 4 33552 345688876 6677787654421 11111 1245566777664 888877776665577
Q ss_pred hhhHH
Q 001014 735 SLPIH 739 (1190)
Q Consensus 735 a~~l~ 739 (1190)
+..+.
T Consensus 162 ~~~l~ 166 (215)
T 2vt3_A 162 TDRLV 166 (215)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77777
No 184
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=90.09 E-value=1.4 Score=42.98 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=28.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
++|+|+|.+... ..-|..+++.|.+.||+|+.+++..
T Consensus 14 ~~IavIGas~~~-------g~~G~~~~~~L~~~G~~v~~vnp~~ 50 (145)
T 2duw_A 14 RTIALVGASDKP-------DRPSYRVMKYLLDQGYHVIPVSPKV 50 (145)
T ss_dssp CCEEEESCCSCT-------TSHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CEEEEECcCCCC-------CChHHHHHHHHHHCCCEEEEeCCcc
Confidence 589999996421 1227789999999999999888876
No 185
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=90.08 E-value=0.61 Score=45.68 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=60.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC--CCcC--ccc----cC---Cccee-ecC-CcHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP--ETVS--TDY----DT---SDRLY-FEP-LTVED 709 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p--~~~s--~~~----~~---ad~~~-~~p-~~~e~ 709 (1190)
.++|.|+|.|.. -|+ -+..+++.+.+.||+++.+|+.. .... ..| ++ .|-.. +.| ....+
T Consensus 13 p~~IavIGas~~-~g~------~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~~~v~~ 85 (145)
T 2duw_A 13 TRTIALVGASDK-PDR------PSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWG 85 (145)
T ss_dssp CCCEEEESCCSC-TTS------HHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCSTHHHH
T ss_pred CCEEEEECcCCC-CCC------hHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCHHHHHH
Confidence 578999999753 122 13455888999999988888876 3221 011 11 12121 122 22455
Q ss_pred HHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHH
Q 001014 710 VLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPD 764 (1190)
Q Consensus 710 v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~ 764 (1190)
+++-+.+.++..|+...+.. ...+++.++ +.| ++++||+--
T Consensus 86 v~~~~~~~g~~~i~i~~~~~-~~~l~~~a~----------~~G---i~~igpnc~ 126 (145)
T 2duw_A 86 VAQEAIAIGAKTLWLQLGVI-NEQAAVLAR----------EAG---LSVVMDRCP 126 (145)
T ss_dssp HHHHHHHHTCCEEECCTTCC-CHHHHHHHH----------TTT---CEEECSCCH
T ss_pred HHHHHHHcCCCEEEEcCChH-HHHHHHHHH----------HcC---CEEEcCCee
Confidence 55444446777777766544 446667777 889 999987643
No 186
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=89.72 E-value=0.49 Score=54.11 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=59.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
+||+|+|+|. .|+.+++.|.+ .++|.+++.+..........+...-++..+.+.+.++++ +.|+|+
T Consensus 17 mkilvlGaG~-----------vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi 82 (365)
T 3abi_A 17 MKVLILGAGN-----------IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVI 82 (365)
T ss_dssp CEEEEECCSH-----------HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred cEEEEECCCH-----------HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEE
Confidence 5899999984 37888888876 588888876543221112233333455567788888876 789999
Q ss_pred ecCCChhHHHHHHHHHHhhHHHHcCCcEeC
Q 001014 173 PTMGGQTALNLAVALAESGALEKYGVELIG 202 (1190)
Q Consensus 173 p~~~g~~~~~~~~~l~~~~~le~~gi~~~G 202 (1190)
.+.+...+..++. .+-+.|.+++-
T Consensus 83 ~~~p~~~~~~v~~------~~~~~g~~yvD 106 (365)
T 3abi_A 83 GALPGFLGFKSIK------AAIKSKVDMVD 106 (365)
T ss_dssp ECCCGGGHHHHHH------HHHHHTCEEEE
T ss_pred EecCCcccchHHH------HHHhcCcceEe
Confidence 9887655444332 45567888873
No 187
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=89.70 E-value=0.15 Score=50.69 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=59.5
Q ss_pred CCcccc-cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1007 GPEMRS-TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1007 g~~~rs-~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
|..|+. +|-|||...|++-+..-+.....|.+|.+ +.+...+++++++.++++.+.+.|++ |+|.+|.+.+|-
T Consensus 18 ~~~mkp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e--~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp 92 (181)
T 4b4k_A 18 GSHMKSLVGVIMGSTSDWETMKYACDILDELNIPYE--KKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP 92 (181)
T ss_dssp ----CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH
T ss_pred CCCCCccEEEEECCHhHHHHHHHHHHHHHHcCCCee--EEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch
Confidence 345653 78899999999988777777778888876 77778999999999999999999998 888899888874
No 188
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=89.65 E-value=1.3 Score=42.80 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=55.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEE-ccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILI-NSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v-~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
.++|+|+|+|.. |..+++.+++. ||+++.+ +.++.... ......-++. .+.+.+++++.++|
T Consensus 4 ~~~vlIiGaG~~-----------g~~l~~~l~~~~g~~vvg~~d~~~~~~g--~~i~g~pV~g---~~~l~~~~~~~~id 67 (141)
T 3nkl_A 4 KKKVLIYGAGSA-----------GLQLANMLRQGKEFHPIAFIDDDRKKHK--TTMQGITIYR---PKYLERLIKKHCIS 67 (141)
T ss_dssp CEEEEEECCSHH-----------HHHHHHHHHHSSSEEEEEEECSCGGGTT--CEETTEEEEC---GGGHHHHHHHHTCC
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHhCCCcEEEEEEECCcccCC--CEecCeEEEC---HHHHHHHHHHCCCC
Confidence 468999999954 77889999876 8998865 44443211 1112222333 35678888899999
Q ss_pred EEEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 170 ALLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 170 ~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
.|+.+........ ...+ ...|...|+.+.
T Consensus 68 ~viia~~~~~~~~-~~~i--~~~l~~~gv~v~ 96 (141)
T 3nkl_A 68 TVLLAVPSASQVQ-KKVI--IESLAKLHVEVL 96 (141)
T ss_dssp EEEECCTTSCHHH-HHHH--HHHHHTTTCEEE
T ss_pred EEEEeCCCCCHHH-HHHH--HHHHHHcCCeEE
Confidence 9887775333211 1122 124666777753
No 189
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=89.59 E-value=0.77 Score=47.09 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=44.6
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccc-cCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDY-DTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~-~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
++|+|+|+... ||+ ++++.|.+.|++|++++.++....... .-......+-.+.+.+.+.++ ++|.|
T Consensus 4 ~~ilVtGatG~-iG~---------~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~v 71 (206)
T 1hdo_A 4 KKIAIFGATGQ-TGL---------TTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAV 71 (206)
T ss_dssp CEEEEESTTSH-HHH---------HHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEE
T ss_pred CEEEEEcCCcH-HHH---------HHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHc--CCCEE
Confidence 68999998553 555 559999999999999988765432110 001111112334666766664 57887
Q ss_pred ccccC
Q 001014 723 IVQFG 727 (1190)
Q Consensus 723 i~~~g 727 (1190)
+...+
T Consensus 72 i~~a~ 76 (206)
T 1hdo_A 72 IVLLG 76 (206)
T ss_dssp EECCC
T ss_pred EECcc
Confidence 75544
No 190
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=89.20 E-value=0.51 Score=50.14 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=48.5
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-CeEEEecCCCCCcCccccCCccee---ecCCcHHHHHHHhhh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-YETIMMNSNPETVSTDYDTSDRLY---FEPLTVEDVLNVIDL 716 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-~~vi~v~~~p~~~s~~~~~ad~~~---~~p~~~e~v~~i~~~ 716 (1190)
...++|||+|+... ||+. +++.|.+.| ++|++++.+++...... ..... .+-.+.+.+.++++
T Consensus 21 ~~mk~vlVtGatG~-iG~~---------l~~~L~~~G~~~V~~~~R~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~- 87 (236)
T 3qvo_A 21 GHMKNVLILGAGGQ-IARH---------VINQLADKQTIKQTLFARQPAKIHKPY--PTNSQIIMGDVLNHAALKQAMQ- 87 (236)
T ss_dssp -CCEEEEEETTTSH-HHHH---------HHHHHTTCTTEEEEEEESSGGGSCSSC--CTTEEEEECCTTCHHHHHHHHT-
T ss_pred CcccEEEEEeCCcH-HHHH---------HHHHHHhCCCceEEEEEcChhhhcccc--cCCcEEEEecCCCHHHHHHHhc-
Confidence 45689999997664 6554 499999999 99999988865543211 11111 12234667777664
Q ss_pred cCCCccccccCCc
Q 001014 717 ERPEGIIVQFGGQ 729 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~ 729 (1190)
++|.||...+..
T Consensus 88 -~~D~vv~~a~~~ 99 (236)
T 3qvo_A 88 -GQDIVYANLTGE 99 (236)
T ss_dssp -TCSEEEEECCST
T ss_pred -CCCEEEEcCCCC
Confidence 578888666654
No 191
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=88.68 E-value=0.15 Score=54.33 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=50.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
.+++|+|+|.|. + +..+++.|.+.|+ +++++.+++.......-..-.+.++.+.+ .++-+.-.+.|.
T Consensus 8 ~~~~viI~G~G~--~---------G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~-~l~~a~i~~ad~ 74 (234)
T 2aef_A 8 KSRHVVICGWSE--S---------TLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVS-DLEKANVRGARA 74 (234)
T ss_dssp --CEEEEESCCH--H---------HHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHH-HHHHTTCTTCSE
T ss_pred CCCEEEEECCCh--H---------HHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHH-HHHhcCcchhcE
Confidence 457899999986 4 4455999999999 99999887653211101111222333444 444344457888
Q ss_pred cccccCCc-hhhhhhhhHH
Q 001014 722 IIVQFGGQ-TPLKLSLPIH 739 (1190)
Q Consensus 722 Vi~~~g~~-~~~~la~~l~ 739 (1190)
|+...+.. .+..++..+.
T Consensus 75 vi~~~~~d~~n~~~~~~a~ 93 (234)
T 2aef_A 75 VIVDLESDSETIHCILGIR 93 (234)
T ss_dssp EEECCSCHHHHHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHHH
Confidence 88877765 3444444444
No 192
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.67 E-value=0.29 Score=49.82 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=46.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~d 169 (1190)
.++|+|+|.|.. |..+++.|++. |++|++++.++..........-..+ -++.+.+.+.+...-.++|
T Consensus 39 ~~~v~IiG~G~~-----------G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 39 HAQVLILGMGRI-----------GTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp TCSEEEECCSHH-----------HHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred CCcEEEECCCHH-----------HHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 458999999965 88999999999 9999999987643211011111222 2334444433220123689
Q ss_pred EEEecCCC
Q 001014 170 ALLPTMGG 177 (1190)
Q Consensus 170 ~Vip~~~g 177 (1190)
.|+.+.+.
T Consensus 108 ~vi~~~~~ 115 (183)
T 3c85_A 108 LVLLAMPH 115 (183)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 88887764
No 193
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=87.52 E-value=0.42 Score=50.19 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcceEEEC-CCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLADRTYIT-PMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~i~-p~~~~~v~~i~~~~~~d~ 170 (1190)
|||+|+|+|.. |..+++.|.+.|++|++++.++....... ...-..+.. +.+.+.+.+ +.-.+.|+
T Consensus 1 M~iiIiG~G~~-----------G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~-a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIGGETT-----------AYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRD-AEVSKNDV 68 (218)
T ss_dssp CCEEEECCHHH-----------HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHH-HTCCTTCE
T ss_pred CEEEEECCCHH-----------HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHh-cCcccCCE
Confidence 37999999964 78999999999999999998775322100 111123443 344444433 33357899
Q ss_pred EEecCCCh
Q 001014 171 LLPTMGGQ 178 (1190)
Q Consensus 171 Vip~~~g~ 178 (1190)
|+.+.+..
T Consensus 69 vi~~~~~d 76 (218)
T 3l4b_C 69 VVILTPRD 76 (218)
T ss_dssp EEECCSCH
T ss_pred EEEecCCc
Confidence 99887754
No 194
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=87.28 E-value=0.32 Score=54.88 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=65.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccC-CcceeecCCcHHHHHHHhhhcCCCc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDT-SDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~-ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
+++|+|+|.|. + +..+++.|.+.|+ +++++.+|+... .... ..-.+.++.+.+.+. -+.-.+.|.
T Consensus 115 ~~~viI~G~G~--~---------g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~-~a~i~~a~~ 180 (336)
T 1lnq_A 115 SRHVVICGWSE--S---------TLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLE-KANVRGARA 180 (336)
T ss_dssp -CEEEEESCCH--H---------HHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHH-HTCSTTEEE
T ss_pred cCCEEEECCcH--H---------HHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHH-hcChhhccE
Confidence 46899999887 3 4556999999999 999999987654 1111 111223444444444 444567888
Q ss_pred cccccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 722 IIVQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 722 Vi~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
++...+.. .+..++..+. +.+ |+...+..+.|.... +.++++|+.
T Consensus 181 vi~~~~~d~~n~~~~~~ar----------~~~--------~~~~iiar~~~~~~~-~~l~~~G~d 226 (336)
T 1lnq_A 181 VIVDLESDSETIHCILGIR----------KID--------ESVRIIAEAERYENI-EQLRMAGAD 226 (336)
T ss_dssp EEECCSSHHHHHHHHHHHH----------TTC--------TTSEEEEECSSGGGH-HHHHHTTCS
T ss_pred EEEcCCccHHHHHHHHHHH----------HHC--------CCCeEEEEECCHHHH-HHHHHcCCC
Confidence 88877655 4444555554 444 333334455554443 456677765
No 195
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=87.17 E-value=0.68 Score=48.43 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=46.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHH-hCCCeEEEecCCCC-CcCc---cccCCcceeecCCcHHHHHHHhhhc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQ-SAGYETIMMNSNPE-TVST---DYDTSDRLYFEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~-~~G~~vi~v~~~p~-~~s~---~~~~ad~~~~~p~~~e~v~~i~~~~ 717 (1190)
.|+|||+|++.. ||+. +++.|. +.|++|++++.+++ .... ...-...+..+-.+.+.+.++++
T Consensus 5 mk~vlVtGasg~-iG~~---------~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-- 72 (221)
T 3r6d_A 5 YXYITILGAAGQ-IAQX---------LTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT-- 72 (221)
T ss_dssp CSEEEEESTTSH-HHHH---------HHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT--
T ss_pred EEEEEEEeCCcH-HHHH---------HHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc--
Confidence 467999997653 6554 488888 89999999988765 3221 00001111112234667777664
Q ss_pred CCCccccccCC
Q 001014 718 RPEGIIVQFGG 728 (1190)
Q Consensus 718 ~~d~Vi~~~g~ 728 (1190)
++|.||...+.
T Consensus 73 ~~d~vv~~ag~ 83 (221)
T 3r6d_A 73 NAEVVFVGAME 83 (221)
T ss_dssp TCSEEEESCCC
T ss_pred CCCEEEEcCCC
Confidence 67888876654
No 196
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=87.10 E-value=1.6 Score=46.82 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc----
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE---- 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~---- 166 (1190)
|.|+|||+|++.. -|+.+++.|.+.|++|++++.++.... .....+.-.+.+.+.++++..
T Consensus 21 m~k~vlITGas~g----------IG~~la~~l~~~G~~V~~~~r~~~~~~-----~~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 21 MSKNILVLGGSGA----------LGAEVVKFFKSKSWNTISIDFRENPNA-----DHSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp -CCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSCCTTS-----SEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCccccc-----ccceEEEeCCHHHHHHHHHHHHHHc
Confidence 4579999998753 278999999999999999987765322 122334444667777766643
Q ss_pred -CCCEEEecCC
Q 001014 167 -RPDALLPTMG 176 (1190)
Q Consensus 167 -~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 86 g~iD~li~~Ag 96 (251)
T 3orf_A 86 IKVDTFVCAAG 96 (251)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 6899986654
No 197
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=87.04 E-value=1.2 Score=50.02 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..|+|||+|+.. +-|..+++.|.+.|++|++++.++.. .-...+..+-.+.+.+.++++ ++|+
T Consensus 18 ~~~~vlVtGatG----------~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~--~~d~ 80 (347)
T 4id9_A 18 GSHMILVTGSAG----------RVGRAVVAALRTQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIM--GVSA 80 (347)
T ss_dssp ---CEEEETTTS----------HHHHHHHHHHHHTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHT--TCSE
T ss_pred CCCEEEEECCCC----------hHHHHHHHHHHhCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHh--CCCE
Confidence 456899999853 33899999999999999999876643 111122233346777777776 8999
Q ss_pred EEecC
Q 001014 171 LLPTM 175 (1190)
Q Consensus 171 Vip~~ 175 (1190)
|+-..
T Consensus 81 vih~A 85 (347)
T 4id9_A 81 VLHLG 85 (347)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98544
No 198
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=86.88 E-value=0.47 Score=51.03 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=43.6
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhc--
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE-- 717 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~-- 717 (1190)
....|+|||+|++.. ||+ .+++.|.+.|++|++++.++...... .+.++-.+.+++.++++..
T Consensus 19 ~~m~k~vlITGas~g-IG~---------~la~~l~~~G~~V~~~~r~~~~~~~~-----~~~~d~~d~~~v~~~~~~~~~ 83 (251)
T 3orf_A 19 SHMSKNILVLGGSGA-LGA---------EVVKFFKSKSWNTISIDFRENPNADH-----SFTIKDSGEEEIKSVIEKINS 83 (251)
T ss_dssp ---CCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESSCCTTSSE-----EEECSCSSHHHHHHHHHHHHT
T ss_pred cccCCEEEEECCCCH-HHH---------HHHHHHHHCCCEEEEEeCCccccccc-----ceEEEeCCHHHHHHHHHHHHH
Confidence 345689999998874 555 44999999999999999886543321 1122223344444444332
Q ss_pred ---CCCcccccc
Q 001014 718 ---RPEGIIVQF 726 (1190)
Q Consensus 718 ---~~d~Vi~~~ 726 (1190)
++|.+|-.-
T Consensus 84 ~~g~iD~li~~A 95 (251)
T 3orf_A 84 KSIKVDTFVCAA 95 (251)
T ss_dssp TTCCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 567766433
No 199
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=86.88 E-value=2.2 Score=46.86 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=47.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----------cCcceEE-ECCCCHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-----------GLADRTY-ITPMTPELV 159 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----------~~ad~~~-i~p~~~~~v 159 (1190)
+++|||+|+... -|..++++|.+.|++|++++.++... ..+ ...-..+ .+-.+.+.+
T Consensus 2 ~~~vlVtGatG~----------iG~~l~~~L~~~g~~V~~~~R~~~~~-~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l 70 (307)
T 2gas_A 2 ENKILILGPTGA----------IGRHIVWASIKAGNPTYALVRKTITA-ANPETKEELIDNYQSLGVILLEGDINDHETL 70 (307)
T ss_dssp CCCEEEESTTST----------THHHHHHHHHHHTCCEEEEECCSCCS-SCHHHHHHHHHHHHHTTCEEEECCTTCHHHH
T ss_pred CcEEEEECCCch----------HHHHHHHHHHhCCCcEEEEECCCccc-CChHHHHHHHHHHHhCCCEEEEeCCCCHHHH
Confidence 358999997432 28899999999999999998765110 000 0011223 333466777
Q ss_pred HHHHHHcCCCEEEecCCC
Q 001014 160 EQVLEKERPDALLPTMGG 177 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~g 177 (1190)
.+.++ ++|+|+...+.
T Consensus 71 ~~~~~--~~d~vi~~a~~ 86 (307)
T 2gas_A 71 VKAIK--QVDIVICAAGR 86 (307)
T ss_dssp HHHHT--TCSEEEECSSS
T ss_pred HHHHh--CCCEEEECCcc
Confidence 77776 79999976653
No 200
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=86.87 E-value=2.2 Score=46.88 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=47.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC-CCC--------ccCcceEEE-CCCCHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI-MTD--------PGLADRTYI-TPMTPELVEQ 161 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~-~~~--------~~~ad~~~i-~p~~~~~v~~ 161 (1190)
+++|||+|+... -|..+++.|.+.|++|+++..++... ... ....-..+. +-.+.+.+.+
T Consensus 4 ~~~ilVtGatG~----------iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~ 73 (308)
T 1qyc_A 4 RSRILLIGATGY----------IGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE 73 (308)
T ss_dssp CCCEEEESTTST----------THHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH
T ss_pred CCEEEEEcCCcH----------HHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHH
Confidence 468999998432 28899999999999999987765321 000 000012222 2236677777
Q ss_pred HHHHcCCCEEEecCC
Q 001014 162 VLEKERPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~ 176 (1190)
.++ ++|+|+...+
T Consensus 74 ~~~--~~d~vi~~a~ 86 (308)
T 1qyc_A 74 AVK--NVDVVISTVG 86 (308)
T ss_dssp HHH--TCSEEEECCC
T ss_pred HHc--CCCEEEECCc
Confidence 776 6999997665
No 201
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=86.81 E-value=0.47 Score=57.73 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=72.7
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
++|+|+|.|.. +..+++.|.+.|+++++++.||+..... . ..+....+-+++++-+.-++.|.++
T Consensus 349 ~~viIiG~G~~-----------G~~la~~L~~~g~~v~vid~d~~~~~~~---~-~~i~gD~t~~~~L~~agi~~ad~vi 413 (565)
T 4gx0_A 349 ELIFIIGHGRI-----------GCAAAAFLDRKPVPFILIDRQESPVCND---H-VVVYGDATVGQTLRQAGIDRASGII 413 (565)
T ss_dssp CCEEEECCSHH-----------HHHHHHHHHHTTCCEEEEESSCCSSCCS---S-CEEESCSSSSTHHHHHTTTSCSEEE
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECChHHHhhc---C-CEEEeCCCCHHHHHhcCccccCEEE
Confidence 78999999884 5566999999999999999999876442 2 3333333444555666778899999
Q ss_pred cccCCc-hhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 724 VQFGGQ-TPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 724 ~~~g~~-~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
+..+.. .++.++..+. +.| +....+..+.|... .+.++++|+..
T Consensus 414 ~~~~~d~~ni~~~~~ak----------~l~--------~~~~iiar~~~~~~-~~~l~~~G~d~ 458 (565)
T 4gx0_A 414 VTTNDDSTNIFLTLACR----------HLH--------SHIRIVARANGEEN-VDQLYAAGADF 458 (565)
T ss_dssp ECCSCHHHHHHHHHHHH----------HHC--------SSSEEEEEESSTTS-HHHHHHHTCSE
T ss_pred EECCCchHHHHHHHHHH----------HHC--------CCCEEEEEECCHHH-HHHHHHcCCCE
Confidence 888876 3334444443 333 34344555555543 34567888763
No 202
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=86.27 E-value=0.65 Score=44.42 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=45.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
++|+|+|+|.+ |..+++.|.+.|++|++++.++....... ...-..+. .+.+.+.+.+. .-.++|.
T Consensus 5 m~i~IiG~G~i-----------G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~ 72 (140)
T 1lss_A 5 MYIIIAGIGRV-----------GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA-GIEDADM 72 (140)
T ss_dssp CEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT-TTTTCSE
T ss_pred CEEEEECCCHH-----------HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc-CcccCCE
Confidence 58999999954 78899999999999999987654211000 01112233 23344443321 1236899
Q ss_pred EEecCCC
Q 001014 171 LLPTMGG 177 (1190)
Q Consensus 171 Vip~~~g 177 (1190)
|+.+.+.
T Consensus 73 vi~~~~~ 79 (140)
T 1lss_A 73 YIAVTGK 79 (140)
T ss_dssp EEECCSC
T ss_pred EEEeeCC
Confidence 9887764
No 203
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=86.18 E-value=0.57 Score=51.26 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=44.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+++|||+|+|.+ |..+++.|.+.|++|++++.++.... .-......+-.+.+.+.++++ .++|+|
T Consensus 3 ~~~ilVtGaG~i-----------G~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~Dl~d~~~~~~~~~-~~~d~v 67 (286)
T 3gpi_A 3 LSKILIAGCGDL-----------GLELARRLTAQGHEVTGLRRSAQPMP---AGVQTLIADVTRPDTLASIVH-LRPEIL 67 (286)
T ss_dssp CCCEEEECCSHH-----------HHHHHHHHHHTTCCEEEEECTTSCCC---TTCCEEECCTTCGGGCTTGGG-GCCSEE
T ss_pred CCcEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCccccc---cCCceEEccCCChHHHHHhhc-CCCCEE
Confidence 358999998743 89999999999999999987755321 111111122234455555444 359999
Q ss_pred EecC
Q 001014 172 LPTM 175 (1190)
Q Consensus 172 ip~~ 175 (1190)
+-..
T Consensus 68 ih~a 71 (286)
T 3gpi_A 68 VYCV 71 (286)
T ss_dssp EECH
T ss_pred EEeC
Confidence 8543
No 204
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=85.83 E-value=2.5 Score=45.86 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc---
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE--- 166 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~--- 166 (1190)
...|+|||+|++.- -|+.+++.|.+.|++|++++.+..... ........+-.+.+.+.+++++.
T Consensus 12 ~~~k~vlVTGas~G----------IG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (269)
T 3vtz_A 12 FTDKVAIVTGGSSG----------IGLAVVDALVRYGAKVVSVSLDEKSDV---NVSDHFKIDVTNEEEVKEAVEKTTKK 78 (269)
T ss_dssp TTTCEEEESSTTSH----------HHHHHHHHHHHTTCEEEEEESCC--CT---TSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCCchhcc---CceeEEEecCCCHHHHHHHHHHHHHH
Confidence 45689999998752 278999999999999999987765432 12222223444666666666543
Q ss_pred --CCCEEEecCC
Q 001014 167 --RPDALLPTMG 176 (1190)
Q Consensus 167 --~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 79 ~g~iD~lv~nAg 90 (269)
T 3vtz_A 79 YGRIDILVNNAG 90 (269)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 7999987654
No 205
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=85.74 E-value=2.1 Score=48.93 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=30.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.+++|+|+|+. ++.+++.++.+||+|+++|+.+.
T Consensus 205 ~rL~IfGAGhv-----------a~ala~~a~~lg~~V~v~D~R~~ 238 (386)
T 2we8_A 205 PRMLVFGAIDF-----------AAAVAQQGAFLGYRVTVCDARPV 238 (386)
T ss_dssp CEEEEECCSTH-----------HHHHHHHHHHTTCEEEEEESCTT
T ss_pred CEEEEECCCHH-----------HHHHHHHHHhCCCEEEEECCchh
Confidence 59999999976 67899999999999999998876
No 206
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=85.71 E-value=0.3 Score=51.35 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=47.8
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCcceee-cCCcHHHHHHHhhhcCCCcc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSDRLYF-EPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad~~~~-~p~~~e~v~~i~~~~~~d~V 722 (1190)
||+|+|+|. + +..+++.|.+.|+++++++.+++....-.. ..-..+. ++.+.+ .+.-+.-.+.|.|
T Consensus 2 ~iiIiG~G~--~---------G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~-~l~~a~i~~ad~v 69 (218)
T 3l4b_C 2 KVIIIGGET--T---------AYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKE-ILRDAEVSKNDVV 69 (218)
T ss_dssp CEEEECCHH--H---------HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHH-HHHHHTCCTTCEE
T ss_pred EEEEECCCH--H---------HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHH-HHHhcCcccCCEE
Confidence 699999887 4 445599999999999999998765432110 1111222 333444 4444445678999
Q ss_pred ccccCCch
Q 001014 723 IVQFGGQT 730 (1190)
Q Consensus 723 i~~~g~~~ 730 (1190)
+...+...
T Consensus 70 i~~~~~d~ 77 (218)
T 3l4b_C 70 VILTPRDE 77 (218)
T ss_dssp EECCSCHH
T ss_pred EEecCCcH
Confidence 88887663
No 207
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=85.60 E-value=2.1 Score=45.28 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=53.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCc-HHHHHH-HhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLT-VEDVLN-VIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~-~e~v~~-i~~~~~~ 719 (1190)
.+.||.|||.|. +|.++ ++.|++.|++|+.++...+ ..-+| +...|.+ +.++++ +....++
T Consensus 5 ~~mkI~IIG~G~--~G~sL---------A~~L~~~G~~V~~~~~~~~-----~~~aD-ilavP~~ai~~vl~~l~~~l~~ 67 (232)
T 3dfu_A 5 PRLRVGIFDDGS--STVNM---------AEKLDSVGHYVTVLHAPED-----IRDFE-LVVIDAHGVEGYVEKLSAFARR 67 (232)
T ss_dssp CCCEEEEECCSC--CCSCH---------HHHHHHTTCEEEECSSGGG-----GGGCS-EEEECSSCHHHHHHHHHTTCCT
T ss_pred CCcEEEEEeeCH--HHHHH---------HHHHHHCCCEEEEecCHHH-----hccCC-EEEEcHHHHHHHHHHHHHhcCC
Confidence 345899999998 88887 8999999999998887421 22456 5555654 555544 3333456
Q ss_pred CccccccCCchhhhhhhhHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIH 739 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~ 739 (1190)
+.+++...+.....+...+.
T Consensus 68 g~ivvd~sgs~~~~vl~~~~ 87 (232)
T 3dfu_A 68 GQMFLHTSLTHGITVMDPLE 87 (232)
T ss_dssp TCEEEECCSSCCGGGGHHHH
T ss_pred CCEEEEECCcCHHHHHHHHH
Confidence 77776655555445555555
No 208
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=85.45 E-value=3.2 Score=40.09 Aligned_cols=39 Identities=33% Similarity=0.456 Sum_probs=28.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.++|.|+|.+... ..-|..+++.|.+.||+|+.+++...
T Consensus 14 p~~IavIGaS~~~-------g~~G~~~~~~L~~~G~~V~~vnp~~~ 52 (138)
T 1y81_A 14 FRKIALVGASKNP-------AKYGNIILKDLLSKGFEVLPVNPNYD 52 (138)
T ss_dssp CCEEEEETCCSCT-------TSHHHHHHHHHHHTTCEEEEECTTCS
T ss_pred CCeEEEEeecCCC-------CCHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 3589999994210 12378899999999999888887653
No 209
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=85.33 E-value=2.9 Score=46.32 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC-CCCCCC---------ccCcceEE-ECCCCHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP-ATIMTD---------PGLADRTY-ITPMTPELVE 160 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~-~~~~~~---------~~~ad~~~-i~p~~~~~v~ 160 (1190)
+++|||+|+... -|..+++.|.+.|++|++++.++ ...... ..-. ..+ .+-.+.+.+.
T Consensus 4 ~~~ilVtGatG~----------iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v-~~v~~D~~d~~~l~ 72 (321)
T 3c1o_A 4 MEKIIIYGGTGY----------IGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGV-TIIEGEMEEHEKMV 72 (321)
T ss_dssp CCCEEEETTTST----------THHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTC-EEEECCTTCHHHHH
T ss_pred ccEEEEEcCCch----------hHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCc-EEEEecCCCHHHHH
Confidence 358999997432 28899999999999999998765 210000 0011 222 3334667777
Q ss_pred HHHHHcCCCEEEecCC
Q 001014 161 QVLEKERPDALLPTMG 176 (1190)
Q Consensus 161 ~i~~~~~~d~Vip~~~ 176 (1190)
+.++ ++|+|+...+
T Consensus 73 ~a~~--~~d~vi~~a~ 86 (321)
T 3c1o_A 73 SVLK--QVDIVISALP 86 (321)
T ss_dssp HHHT--TCSEEEECCC
T ss_pred HHHc--CCCEEEECCC
Confidence 7776 6999997665
No 210
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=85.32 E-value=0.9 Score=53.15 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=51.4
Q ss_pred CCCCCeeecCCHHHHHHHHHHcCCCcEEEecCCCCCCcceEE--eCCHHHHHHHHHHHHhcCCCCcEEEeeecCC
Q 001014 226 VKTPPSGIGNTLDECISIANEIGEFPLIIRPAFTLGGTGGGI--AYNKEEFEAICKAGLAASLTSQVLVEKSLLG 298 (1190)
Q Consensus 226 ipvp~~~~v~s~~e~~~~~~~ig~~PvVVKP~~g~gg~Gv~i--v~~~~el~~~~~~~~~~~~~~~vlVEe~I~G 298 (1190)
++..+++.+.+.++...+.+.+. -+||||+++.||.|+.+ -.+.+++++..+++... ...++.|++++-
T Consensus 341 l~~VpT~~c~~~~~~~~vl~~l~--~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~--p~~yIaQe~v~l 411 (474)
T 3n6x_A 341 LSNVPTYQLSKADDLKYVLDNLA--ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN--PANYIAQPTLAL 411 (474)
T ss_dssp SEECCCEETTSHHHHHHHHHSGG--GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS--GGGEEEEECCCC
T ss_pred ccCCCceecCCHHHHHHHHhchh--heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC--CCCEEEeeccCC
Confidence 44556777788888888887776 79999999999999988 56788888888887765 346999999986
No 211
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=85.24 E-value=1.2 Score=46.56 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=47.8
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCC-HHHHHHHHHHcCCCEE
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMT-PELVEQVLEKERPDAL 171 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~-~~~v~~i~~~~~~d~V 171 (1190)
||||+|+.. +-|+.+++.|.+.|++|++++.++...... .-. ..+. +-.+ .+.+.+.++ ++|+|
T Consensus 2 ~ilItGatG----------~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~-~~~~~D~~d~~~~~~~~~~--~~d~v 67 (219)
T 3dqp_A 2 KIFIVGSTG----------RVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNV-KAVHFDVDWTPEEMAKQLH--GMDAI 67 (219)
T ss_dssp EEEEESTTS----------HHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTE-EEEECCTTSCHHHHHTTTT--TCSEE
T ss_pred eEEEECCCC----------HHHHHHHHHHHHCCCEEEEEECCccchhhc-CCc-eEEEecccCCHHHHHHHHc--CCCEE
Confidence 899999664 338999999999999999998776543211 111 2233 3335 677777665 79999
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+...+
T Consensus 68 i~~ag 72 (219)
T 3dqp_A 68 INVSG 72 (219)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 97665
No 212
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=85.11 E-value=0.96 Score=50.61 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=46.8
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcce--e-ecCCcHHHHHHHhhh
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRL--Y-FEPLTVEDVLNVIDL 716 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~--~-~~p~~~e~v~~i~~~ 716 (1190)
....++|||+|+... ||+ ++++.|.+.|++|++++.++............. + .+-.+.+.+.++++.
T Consensus 17 ~~~~~~vlVTGasG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 17 RGSHMRILITGGAGC-LGS---------NLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp TTTCCEEEEETTTSH-HHH---------HHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCH-HHH---------HHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 345679999998664 555 559999999999999987643321000000111 1 122345667677665
Q ss_pred cCCCcccccc
Q 001014 717 ERPEGIIVQF 726 (1190)
Q Consensus 717 ~~~d~Vi~~~ 726 (1190)
.++|.||-.-
T Consensus 87 ~~~D~vih~A 96 (330)
T 2pzm_A 87 FKPTHVVHSA 96 (330)
T ss_dssp HCCSEEEECC
T ss_pred cCCCEEEECC
Confidence 5788877433
No 213
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=84.86 E-value=2.8 Score=47.76 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=49.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC--CccCc---------c-eEEE-CCCCHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT--DPGLA---------D-RTYI-TPMTPELV 159 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~--~~~~a---------d-~~~i-~p~~~~~v 159 (1190)
++|||+|+.. +-|..+++.|.+.|++|++++.++..... ..... . ..+. +-.+.+.+
T Consensus 29 k~vlVtGatG----------~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 98 (381)
T 1n7h_A 29 KIALITGITG----------QDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSL 98 (381)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHH
T ss_pred CeEEEEcCCc----------hHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHH
Confidence 6899999853 33889999999999999999876543100 00110 1 1222 33367788
Q ss_pred HHHHHHcCCCEEEecCC
Q 001014 160 EQVLEKERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~ 176 (1190)
.++++..++|+|+-..+
T Consensus 99 ~~~~~~~~~d~Vih~A~ 115 (381)
T 1n7h_A 99 RRWIDVIKPDEVYNLAA 115 (381)
T ss_dssp HHHHHHHCCSEEEECCS
T ss_pred HHHHHhcCCCEEEECCc
Confidence 88887778999986554
No 214
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=84.67 E-value=0.65 Score=55.58 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=33.2
Q ss_pred CCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 87 GKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 87 ~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|..++++||+|||+| ++|..+++.|++.+++|++|++++
T Consensus 37 p~~~~KprVVIIGgG-----------~AGl~~A~~L~~~~~~VtLId~~~ 75 (502)
T 4g6h_A 37 PQHSDKPNVLILGSG-----------WGAISFLKHIDTKKYNVSIISPRS 75 (502)
T ss_dssp CCSCSSCEEEEECSS-----------HHHHHHHHHSCTTTCEEEEEESSS
T ss_pred CCCCCCCCEEEECCc-----------HHHHHHHHHhhhCCCcEEEECCCC
Confidence 444556799999999 668999999999999999998765
No 215
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=84.64 E-value=3.3 Score=44.30 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcc--eEE-ECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLAD--RTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad--~~~-i~p~~~~~v~~i~~~~ 166 (1190)
..|++||.|++.- -|+.+++.|.+.|++|++++.++....... .... ..+ .+-.+.+.+.+++++.
T Consensus 6 ~~k~~lVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 6 KSRVFIVTGASSG----------LGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp TTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 4579999998742 278999999999999999987764322111 1111 122 2333566666655532
Q ss_pred -----CCCEEEecCC
Q 001014 167 -----RPDALLPTMG 176 (1190)
Q Consensus 167 -----~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 76 ~~~~g~id~lv~nAg 90 (257)
T 3tpc_A 76 KQEFGHVHGLVNCAG 90 (257)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 7999997654
No 216
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=84.61 E-value=2.9 Score=47.60 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=28.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
.+||+|.|||-- | |=|-+..++++|++.|++|.++.+.
T Consensus 2 ~~~i~i~~GGTg--G----Hi~palala~~L~~~g~~V~~vg~~ 39 (365)
T 3s2u_A 2 KGNVLIMAGGTG--G----HVFPALACAREFQARGYAVHWLGTP 39 (365)
T ss_dssp -CEEEEECCSSH--H----HHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCcEEEEcCCCH--H----HHHHHHHHHHHHHhCCCEEEEEECC
Confidence 469999998831 1 2245778999999999999988643
No 217
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=84.58 E-value=1.2 Score=48.33 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~ 164 (1190)
|....+.|+|||.|++.. -|+.+++.|.+.|++|++++.+...........-..+ .+-.+.+.+.++++
T Consensus 10 m~~~~~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (266)
T 3p19_A 10 MGRGSMKKLVVITGASSG----------IGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAIT 79 (266)
T ss_dssp -----CCCEEEEESTTSH----------HHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHH
Confidence 443345679999998753 2789999999999999999876432110000011222 33346666666555
Q ss_pred Hc-----CCCEEEecCC
Q 001014 165 KE-----RPDALLPTMG 176 (1190)
Q Consensus 165 ~~-----~~d~Vip~~~ 176 (1190)
+. ++|+++..-+
T Consensus 80 ~~~~~~g~iD~lvnnAg 96 (266)
T 3p19_A 80 RAEKIYGPADAIVNNAG 96 (266)
T ss_dssp HHHHHHCSEEEEEECCC
T ss_pred HHHHHCCCCCEEEECCC
Confidence 32 7899986654
No 218
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=84.56 E-value=1.8 Score=48.47 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCC--CeEEEEccCCCCCCCC--ccC---cc-eEEE-CCCCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEG--YEVILINSNPATIMTD--PGL---AD-RTYI-TPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G--~~vi~v~~~~~~~~~~--~~~---ad-~~~i-~p~~~~~v~~ 161 (1190)
.+|+|||+|+.. +-|..+++.|.+.| ++|+.++..+...... ... .. ..+. +-.+.+.+.+
T Consensus 23 ~~~~vlVtGatG----------~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~ 92 (346)
T 4egb_A 23 NAMNILVTGGAG----------FIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEH 92 (346)
T ss_dssp -CEEEEEETTTS----------HHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHH
T ss_pred CCCeEEEECCcc----------HHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHH
Confidence 356999999853 34899999999999 7888877554211100 000 11 2222 3347788888
Q ss_pred HHHHcCCCEEEecCC
Q 001014 162 VLEKERPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~ 176 (1190)
+++..++|+|+-..+
T Consensus 93 ~~~~~~~d~Vih~A~ 107 (346)
T 4egb_A 93 VIKERDVQVIVNFAA 107 (346)
T ss_dssp HHHHHTCCEEEECCC
T ss_pred HHhhcCCCEEEECCc
Confidence 888878999996554
No 219
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=84.51 E-value=2.2 Score=47.47 Aligned_cols=72 Identities=22% Similarity=0.378 Sum_probs=49.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCc-c-eEE-ECCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLA-D-RTY-ITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~a-d-~~~-i~p~~~~~v~~i~~~~~~d 169 (1190)
|+|||+|+.. +-|..+++.|.+.|++|++++.++.... .... . ..+ .+-.+.+.+.++++..++|
T Consensus 2 ~~ilVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d 69 (330)
T 2c20_A 2 NSILICGGAG----------YIGSHAVKKLVDEGLSVVVVDNLQTGHE--DAITEGAKFYNGDLRDKAFLRDVFTQENIE 69 (330)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCSSCCG--GGSCTTSEEEECCTTCHHHHHHHHHHSCEE
T ss_pred CEEEEECCCc----------HHHHHHHHHHHhCCCEEEEEeCCCcCch--hhcCCCcEEEECCCCCHHHHHHHHhhcCCC
Confidence 5899999753 3389999999999999999976543211 1111 1 223 3334677788888777899
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
+|+-..+
T Consensus 70 ~vih~a~ 76 (330)
T 2c20_A 70 AVMHFAA 76 (330)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9986654
No 220
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=84.43 E-value=2.9 Score=47.75 Aligned_cols=73 Identities=26% Similarity=0.235 Sum_probs=48.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
+++|||+|+.. +-|..+++.|.+.|++|++++.++..........-..+. +-.+.+.+.++++ ++|+
T Consensus 29 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~ 96 (379)
T 2c5a_A 29 NLKISITGAGG----------FIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDH 96 (379)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSE
T ss_pred CCeEEEECCcc----------HHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCE
Confidence 46999999853 338899999999999999998765432211000112232 3336677777765 8999
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+-..+
T Consensus 97 Vih~A~ 102 (379)
T 2c5a_A 97 VFNLAA 102 (379)
T ss_dssp EEECCC
T ss_pred EEECce
Confidence 986654
No 221
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=84.39 E-value=2.5 Score=46.30 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=47.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCC-CeEEEEccCCCCCCC---CccCcceEE-ECCCCHHHHHHHHHHc
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEG-YEVILINSNPATIMT---DPGLADRTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-~~vi~v~~~~~~~~~---~~~~ad~~~-i~p~~~~~v~~i~~~~ 166 (1190)
+++|||+|+.. +-|..+++.|.+.| ++|++++.++..... ...-. ..+ .+-.+.+.+.+.++
T Consensus 5 ~~~ilVtGatG----------~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~-~~~~~D~~d~~~l~~~~~-- 71 (299)
T 2wm3_A 5 KKLVVVFGGTG----------AQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGA-EVVQGDQDDQVIMELALN-- 71 (299)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTC-EEEECCTTCHHHHHHHHT--
T ss_pred CCEEEEECCCc----------hHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCC-EEEEecCCCHHHHHHHHh--
Confidence 36899999843 23889999999998 999999877643100 00011 222 33346677777765
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|.|+...+
T Consensus 72 ~~d~vi~~a~ 81 (299)
T 2wm3_A 72 GAYATFIVTN 81 (299)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEEeCC
Confidence 6999997654
No 222
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=84.35 E-value=0.71 Score=51.97 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
..++++|||+|+.+. ||+ ++++.|.+.|++|++++.++..... .....+-.+.+.+.++++ ++
T Consensus 16 ~~~~~~vlVtGatG~-iG~---------~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~~~Dl~d~~~~~~~~~--~~ 78 (347)
T 4id9_A 16 PRGSHMILVTGSAGR-VGR---------AVVAALRTQGRTVRGFDLRPSGTGG-----EEVVGSLEDGQALSDAIM--GV 78 (347)
T ss_dssp -----CEEEETTTSH-HHH---------HHHHHHHHTTCCEEEEESSCCSSCC-----SEEESCTTCHHHHHHHHT--TC
T ss_pred ccCCCEEEEECCCCh-HHH---------HHHHHHHhCCCEEEEEeCCCCCCCc-----cEEecCcCCHHHHHHHHh--CC
Confidence 456789999999664 554 5599999999999999887654111 111112234566666664 67
Q ss_pred Ccccc
Q 001014 720 EGIIV 724 (1190)
Q Consensus 720 d~Vi~ 724 (1190)
|.|+-
T Consensus 79 d~vih 83 (347)
T 4id9_A 79 SAVLH 83 (347)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77763
No 223
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=84.31 E-value=0.81 Score=47.95 Aligned_cols=69 Identities=19% Similarity=0.407 Sum_probs=44.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceee---cCCcHHHHHHHhhhcCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYF---EPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~---~p~~~e~v~~i~~~~~~ 719 (1190)
.++|||+|+... ||+ ++++.|.+.|++|++++.++...... .+...+ +-.+.+.+.++++ ++
T Consensus 4 m~~ilItGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~--~~ 68 (227)
T 3dhn_A 4 VKKIVLIGASGF-VGS---------ALLNEALNRGFEVTAVVRHPEKIKIE---NEHLKVKKADVSSLDEVCEVCK--GA 68 (227)
T ss_dssp CCEEEEETCCHH-HHH---------HHHHHHHTTTCEEEEECSCGGGCCCC---CTTEEEECCCTTCHHHHHHHHT--TC
T ss_pred CCEEEEEcCCch-HHH---------HHHHHHHHCCCEEEEEEcCcccchhc---cCceEEEEecCCCHHHHHHHhc--CC
Confidence 478999997653 554 55999999999999999886543211 111111 2234666766665 57
Q ss_pred Ccccccc
Q 001014 720 EGIIVQF 726 (1190)
Q Consensus 720 d~Vi~~~ 726 (1190)
|.||-..
T Consensus 69 d~vi~~a 75 (227)
T 3dhn_A 69 DAVISAF 75 (227)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 7777443
No 224
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=84.16 E-value=1.2 Score=50.05 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=49.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccc--------cCCcceeecCCcHHHHHHHh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDY--------DTSDRLYFEPLTVEDVLNVI 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~--------~~ad~~~~~p~~~e~v~~i~ 714 (1190)
+++|||+|+.+. +|+ ++++.|.+.|++|+++..++....... .-..-+..+-.+.+.+.+++
T Consensus 10 ~~~IlVtGatG~-iG~---------~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 10 KGRVLIAGATGF-IGQ---------FVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp -CCEEEECTTSH-HHH---------HHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CCeEEEECCCcH-HHH---------HHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHH
Confidence 568999999553 555 449999999999999988763211000 00111112234578888888
Q ss_pred hhcCCCccccccCC
Q 001014 715 DLERPEGIIVQFGG 728 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~ 728 (1190)
+..++|.||...+.
T Consensus 80 ~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 80 KEHEIDIVVSTVGG 93 (346)
T ss_dssp HHTTCCEEEECCCG
T ss_pred hhCCCCEEEECCch
Confidence 87789998876554
No 225
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=84.14 E-value=2.2 Score=47.05 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
+++|||+|+.. +-|..+++.|.+.|++|++++.++.... .. .-..+...++.+.+.++++ ++|+|
T Consensus 2 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~-~~~~~~~Dl~~~~~~~~~~--~~d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTG----------FLGQYVVESIKNDGNTPIILTRSIGNKA--IN-DYEYRVSDYTLEDLINQLN--DVDAV 66 (311)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESCCC--------CCEEEECCCCHHHHHHHTT--TCSEE
T ss_pred CCEEEEECCCc----------HHHHHHHHHHHhCCCEEEEEeCCCCccc--CC-ceEEEEccccHHHHHHhhc--CCCEE
Confidence 36999999753 3489999999999999999987733221 11 1123344444566666665 89999
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+-..+
T Consensus 67 ih~a~ 71 (311)
T 3m2p_A 67 VHLAA 71 (311)
T ss_dssp EECCC
T ss_pred EEccc
Confidence 86544
No 226
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=84.11 E-value=0.54 Score=46.56 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=58.8
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+++.++++.+.++|++ |+|.+|.+.+|-
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~l~~~gi~~e--v~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp 82 (173)
T 4grd_A 14 LVGVLMGSSSDWDVMKHAVAILQEFGVPYE--AKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP 82 (173)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH
T ss_pred eEEEEeCcHhHHHHHHHHHHHHHHcCCCEE--EEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch
Confidence 467889999999988888888888888866 77778999999999999999999997 888899888874
No 227
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=83.97 E-value=3.2 Score=46.12 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC--cc---Ccc-eEEE-CCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD--PG---LAD-RTYI-TPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--~~---~ad-~~~i-~p~~~~~v~~i~ 163 (1190)
++++|||+|+.. +-|..+++.|.+.|++|++++.++...... .. ... ..+. +-.+.+.+.+++
T Consensus 13 ~~~~vlVTGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 82 (335)
T 1rpn_A 13 MTRSALVTGITG----------QDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAV 82 (335)
T ss_dssp --CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHH
T ss_pred cCCeEEEECCCC----------hHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHH
Confidence 457999999864 348899999999999999998765431100 00 011 1222 334677888888
Q ss_pred HHcCCCEEEecCC
Q 001014 164 EKERPDALLPTMG 176 (1190)
Q Consensus 164 ~~~~~d~Vip~~~ 176 (1190)
+..++|+|+-..+
T Consensus 83 ~~~~~d~Vih~A~ 95 (335)
T 1rpn_A 83 IKAQPQEVYNLAA 95 (335)
T ss_dssp HHHCCSEEEECCS
T ss_pred HHcCCCEEEECcc
Confidence 8778999986554
No 228
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=83.95 E-value=2.9 Score=46.71 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=49.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCcc-eEE-ECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLAD-RTY-ITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~ad-~~~-i~p~~~~~v~~i~~~~~~ 168 (1190)
+++|||+|+.. +-|..+++.|.+.|++|++++.++..... ...... ..+ .+-.+.+.+.++++..++
T Consensus 21 ~~~vlVTGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (333)
T 2q1w_A 21 MKKVFITGICG----------QIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQP 90 (333)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCcc----------HHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCC
Confidence 35899999753 33889999999999999999876432110 001111 122 233467778888876679
Q ss_pred CEEEecCC
Q 001014 169 DALLPTMG 176 (1190)
Q Consensus 169 d~Vip~~~ 176 (1190)
|+|+-..+
T Consensus 91 D~vih~A~ 98 (333)
T 2q1w_A 91 DAVVHTAA 98 (333)
T ss_dssp SEEEECCC
T ss_pred cEEEECce
Confidence 99996554
No 229
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=83.93 E-value=3 Score=47.11 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=48.6
Q ss_pred CCCCCEEEEEcCCccccccccccchHHHHHHHHHHH--CCCeEEEEccCCCCC----------CCCccC---cceEEECC
Q 001014 89 RTDLRKILILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVILINSNPATI----------MTDPGL---ADRTYITP 153 (1190)
Q Consensus 89 ~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~--~G~~vi~v~~~~~~~----------~~~~~~---ad~~~i~p 153 (1190)
...+++|||+|+.. +-|..+++.|.+ .|++|++++.++... ...... .-..+...
T Consensus 7 ~~~~~~vlVTGatG----------~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 76 (362)
T 3sxp_A 7 ELENQTILITGGAG----------FVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAAD 76 (362)
T ss_dssp CCTTCEEEEETTTS----------HHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECC
T ss_pred hcCCCEEEEECCCC----------HHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECC
Confidence 34567999999764 348999999999 999999998654310 000000 11233333
Q ss_pred -CCHHHHHHHHHHcCCCEEEecCC
Q 001014 154 -MTPELVEQVLEKERPDALLPTMG 176 (1190)
Q Consensus 154 -~~~~~v~~i~~~~~~d~Vip~~~ 176 (1190)
.+.+.+.++ ...++|+|+-..+
T Consensus 77 l~d~~~~~~~-~~~~~D~vih~A~ 99 (362)
T 3sxp_A 77 INNPLDLRRL-EKLHFDYLFHQAA 99 (362)
T ss_dssp TTCHHHHHHH-TTSCCSEEEECCC
T ss_pred CCCHHHHHHh-hccCCCEEEECCc
Confidence 356666665 4458999996554
No 230
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=83.82 E-value=1.4 Score=48.57 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=49.4
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC--CCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~d 169 (1190)
|+|||+|+.. +-|..+++.|.+. |++|++++.++..... ..-. ..+ .+-.+.+.+.+++++.++|
T Consensus 3 ~~vlVtGatG----------~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~~~-~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 3 PKILIIGACG----------QIGTELTQKLRKLYGTENVIASDIRKLNTDV-VNSG-PFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCEEEETTTS----------HHHHHHHHHHHHHHCGGGEEEEESCCCSCHH-HHSS-CEEECCTTCHHHHHHHHHHTTCC
T ss_pred ceEEEECCcc----------HHHHHHHHHHHHhCCCCEEEEEcCCCccccc-cCCC-ceEEecCCCHHHHHHHHhhcCCC
Confidence 5899999843 3388999999998 9999999866543110 0001 222 3334677888888877899
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
+|+-..+
T Consensus 71 ~vih~a~ 77 (312)
T 2yy7_A 71 DIYLMAA 77 (312)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9986654
No 231
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=83.69 E-value=2.7 Score=46.98 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=51.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-------cCcceEE-ECCCCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-------GLADRTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-------~~ad~~~-i~p~~~~~v~~i~ 163 (1190)
.++|||+|+.. +-|+.+++.|.+.|++|++++.++....... ...-..+ .+-.+.+.+.+++
T Consensus 5 ~~~vlVTGatG----------~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (341)
T 3enk_A 5 KGTILVTGGAG----------YIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIF 74 (341)
T ss_dssp SCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred CcEEEEecCCc----------HHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence 46999999754 3388999999999999999987654321100 0011222 2334678888888
Q ss_pred HHcCCCEEEecCC
Q 001014 164 EKERPDALLPTMG 176 (1190)
Q Consensus 164 ~~~~~d~Vip~~~ 176 (1190)
+..++|.|+-..+
T Consensus 75 ~~~~~d~vih~A~ 87 (341)
T 3enk_A 75 DAHPITAAIHFAA 87 (341)
T ss_dssp HHSCCCEEEECCC
T ss_pred hccCCcEEEECcc
Confidence 8889999986554
No 232
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=83.51 E-value=2.3 Score=51.72 Aligned_cols=169 Identities=11% Similarity=0.080 Sum_probs=89.5
Q ss_pred ccchHHHHHHHHHHHCCCeEEEEc-cCCCCCCCCccC-------cceEEECCCCHHHHHHHHHH-cCCCEEE-e-cCCCh
Q 001014 110 EFDYSGTQACKALKEEGYEVILIN-SNPATIMTDPGL-------ADRTYITPMTPELVEQVLEK-ERPDALL-P-TMGGQ 178 (1190)
Q Consensus 110 E~d~sg~~~~~al~~~G~~vi~v~-~~~~~~~~~~~~-------ad~~~i~p~~~~~v~~i~~~-~~~d~Vi-p-~~~g~ 178 (1190)
|-+++..-+.+++++.|+++.+++ ...-....+..+ -+..|- -...|.+.+-+++ ..++.+- + ..+..
T Consensus 391 Ed~~t~~~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lfk-lypwE~m~~~~~~~~~~~~~~~~~~~g~~ 469 (619)
T 2io8_A 391 EENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWK-TWAWETAFDQIREVSDREFAAVPIRTGHP 469 (619)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEEE-SSCHHHHHHHHHHC---CCSSCCCCSCCS
T ss_pred cchHHHHHHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEEe-cCCHHHHHHHhhhhcccccccccccccCc
Confidence 444778888899999999999997 443221111111 111121 1234444332211 1122100 0 00000
Q ss_pred -hHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcC-CC-CCCeeecCCHHHHHHHHHHcCCCcEEEe
Q 001014 179 -TALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIG-VK-TPPSGIGNTLDECISIANEIGEFPLIIR 255 (1190)
Q Consensus 179 -~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~G-ip-vp~~~~v~s~~e~~~~~~~ig~~PvVVK 255 (1190)
.+... ...++..++.++.|....+ ..||..+.-+.+.+. -| .+++..-.+. ++ . .+ ..|+|
T Consensus 470 ~~g~~l------l~~l~~~~v~iieP~~~~l--lsNKailalLw~l~p~hp~LLpT~f~~~~-~l----~-~~--~yV~K 533 (619)
T 2io8_A 470 QNEVRL------IDVLLRPEVLVFEPLWTVI--PGNKAILPILWSLFPHHRYLLDTDFTVND-EL----V-KT--GYAVK 533 (619)
T ss_dssp SCCCCH------HHHHTCTTCEEESCGGGGT--TTSTTHHHHHHHHSTTCTTCCCEESSCCH-HH----H-HH--CEEEE
T ss_pred cchHHH------HHHHHhCCCEEECHHHHHH--hhhHHHHHHHHHhCCCCCCCCCeeecCCc-cc----c-cC--CEEEc
Confidence 00011 1234456789997666554 999999997777542 22 2366543333 22 1 12 59999
Q ss_pred cCCCCCCcceEEeCCHHHHHHHHHHHHhcCCCCcEEEeeecCC
Q 001014 256 PAFTLGGTGGGIAYNKEEFEAICKAGLAASLTSQVLVEKSLLG 298 (1190)
Q Consensus 256 P~~g~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vlVEe~I~G 298 (1190)
|.+|..|.||.++...++. +...........+|.|+|++=
T Consensus 534 Pi~gReG~nV~i~~~~~~~---~~~~~~~y~~~~~IyQe~~~l 573 (619)
T 2io8_A 534 PIAGRCGSNIDLVSHHEEV---LDKTSGKFAEQKNIYQQLWCL 573 (619)
T ss_dssp ETTCCTTTTCEEECTTSCE---EEECCCTTTTSCEEEEECCCC
T ss_pred cCCCCCCCCEEEEeCCChh---HhhccccccCCCeEEEEecCC
Confidence 9999999999999762221 011111123467899999985
No 233
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=83.50 E-value=3.7 Score=45.14 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=46.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc--------cCcceEEE-CCCCHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP--------GLADRTYI-TPMTPELVEQV 162 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~--------~~ad~~~i-~p~~~~~v~~i 162 (1190)
+++|||+|+... -|..+++.|.+.|++|+++..++....... ...-..+. +-.+.+.+.+.
T Consensus 4 ~~~ilVtGatG~----------iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~ 73 (313)
T 1qyd_A 4 KSRVLIVGGTGY----------IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA 73 (313)
T ss_dssp CCCEEEESTTST----------THHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH
T ss_pred CCEEEEEcCCcH----------HHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHH
Confidence 468999997432 288999999999999999987643210000 00012222 22366777777
Q ss_pred HHHcCCCEEEecCC
Q 001014 163 LEKERPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~~~d~Vip~~~ 176 (1190)
++ ++|+|+...+
T Consensus 74 ~~--~~d~vi~~a~ 85 (313)
T 1qyd_A 74 LK--QVDVVISALA 85 (313)
T ss_dssp HT--TCSEEEECCC
T ss_pred Hh--CCCEEEECCc
Confidence 76 7999997654
No 234
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=83.50 E-value=2.9 Score=46.67 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=49.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC--ccC---cceEE--ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD--PGL---ADRTY--ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--~~~---ad~~~--i~p~~~~~v~~i~~ 164 (1190)
.|+|||+|+.. +-|..+++.|.+.|++|++++.++...... ... ....+ .+-.+.+.+.++++
T Consensus 3 ~~~vlVtGatG----------~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 72 (345)
T 2z1m_A 3 GKRALITGIRG----------QDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIE 72 (345)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEECCCC----------hHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHH
Confidence 36899999853 338899999999999999998765432100 000 01112 22236677888887
Q ss_pred HcCCCEEEecCC
Q 001014 165 KERPDALLPTMG 176 (1190)
Q Consensus 165 ~~~~d~Vip~~~ 176 (1190)
..++|+|+-..+
T Consensus 73 ~~~~d~vih~A~ 84 (345)
T 2z1m_A 73 KVQPDEVYNLAA 84 (345)
T ss_dssp HHCCSEEEECCC
T ss_pred hcCCCEEEECCC
Confidence 778999986654
No 235
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=83.44 E-value=1.2 Score=48.34 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=45.5
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhc--
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE-- 717 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~-- 717 (1190)
+...|+|||.|++.. ||+. +++.|.+.|++|++++.+++.... ....+..+-.+.+.+.++++..
T Consensus 11 ~~~~k~vlVTGas~G-IG~a---------ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSG-IGLA---------VVDALVRYGAKVVSVSLDEKSDVN---VSDHFKIDVTNEEEVKEAVEKTTK 77 (269)
T ss_dssp TTTTCEEEESSTTSH-HHHH---------HHHHHHHTTCEEEEEESCC--CTT---SSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHH---------HHHHHHHCCCEEEEEeCCchhccC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 456789999998874 6554 499999999999999887654321 1111112223345554444332
Q ss_pred ---CCCccccccC
Q 001014 718 ---RPEGIIVQFG 727 (1190)
Q Consensus 718 ---~~d~Vi~~~g 727 (1190)
++|.+|-.-|
T Consensus 78 ~~g~iD~lv~nAg 90 (269)
T 3vtz_A 78 KYGRIDILVNNAG 90 (269)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 6787775433
No 236
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=83.19 E-value=1.4 Score=48.05 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=46.4
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC--CCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d 169 (1190)
|+|||+|+.. +-|..+++.|.+. |++|++++.++..........-..+. +-.+.+.+.+.++ ++|
T Consensus 1 ~~ilVtGatG----------~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d 68 (287)
T 2jl1_A 1 FSIAVTGATG----------QLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFA--GVS 68 (287)
T ss_dssp CCEEETTTTS----------HHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTT--TCS
T ss_pred CeEEEEcCCc----------hHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHh--cCC
Confidence 4799999843 3388999999998 99999998765421100000112233 3346677777665 699
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
.|+-..+
T Consensus 69 ~vi~~a~ 75 (287)
T 2jl1_A 69 KLLFISG 75 (287)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9986554
No 237
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=83.10 E-value=3.6 Score=39.69 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC--cccc----C---Ccceee-cCC-cHHH
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS--TDYD----T---SDRLYF-EPL-TVED 709 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s--~~~~----~---ad~~~~-~p~-~~e~ 709 (1190)
...++|.|+|.+.. -|. -+..+++.+.+.||+++.+|+...... ..|. + .|-... .|. ...+
T Consensus 12 ~~p~~IavIGaS~~-~g~------~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp~~~v~~ 84 (138)
T 1y81_A 12 KEFRKIALVGASKN-PAK------YGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQ 84 (138)
T ss_dssp --CCEEEEETCCSC-TTS------HHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHHHHH
T ss_pred cCCCeEEEEeecCC-CCC------HHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeCHHHHHH
Confidence 45689999999542 121 144558889999999888887654321 0111 1 121111 221 1333
Q ss_pred HHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHH
Q 001014 710 VLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDS 765 (1190)
Q Consensus 710 v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~ 765 (1190)
+++-+.+.++..++...+.. ...+++.++ +.| ++++||+--.
T Consensus 85 v~~~~~~~g~~~i~~~~~~~-~~~l~~~a~----------~~G---i~~igpnc~g 126 (138)
T 1y81_A 85 VAKEAVEAGFKKLWFQPGAE-SEEIRRFLE----------KAG---VEYSFGRCIM 126 (138)
T ss_dssp HHHHHHHTTCCEEEECTTSC-CHHHHHHHH----------HHT---CEEECSCCHH
T ss_pred HHHHHHHcCCCEEEEcCccH-HHHHHHHHH----------HCC---CEEEcCCcce
Confidence 44333345677777666554 345666666 788 8999876433
No 238
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=83.05 E-value=3.7 Score=45.29 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d 169 (1190)
..++|||+|+.. +-|..+++.|.+.|++|++++.++.. .. ..-..+. +-.+.+.+.++++..++|
T Consensus 11 ~~~~vlVTGatG----------~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---l~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 11 GSMRALITGVAG----------FVGKYLANHLTEQNVEVFGTSRNNEA-KL---PNVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp --CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESCTTC-CC---TTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CcceEEEECCCC----------hHHHHHHHHHHHCCCEEEEEecCCcc-cc---ceeeEEECCCCCHHHHHHHHHhcCCC
Confidence 456999999864 34899999999999999999876543 11 1112222 334677888888877899
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
+|+-..+
T Consensus 77 ~vih~A~ 83 (321)
T 2pk3_A 77 YIFHLAA 83 (321)
T ss_dssp EEEECCS
T ss_pred EEEEcCc
Confidence 9986654
No 239
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=82.89 E-value=4.9 Score=42.78 Aligned_cols=72 Identities=22% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc-----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE----- 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~----- 166 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++.... .. ......+-.+.+.+.+++++.
T Consensus 7 ~k~vlVTGas~g----------iG~~ia~~l~~~G~~V~~~~r~~~~~~--~~-~~~~~~D~~d~~~~~~~~~~~~~~~g 73 (250)
T 2fwm_X 7 GKNVWVTGAGKG----------IGYATALAFVEAGAKVTGFDQAFTQEQ--YP-FATEVMDVADAAQVAQVCQRLLAETE 73 (250)
T ss_dssp TCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCCCSSC--CS-SEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCchhhhc--CC-ceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 478999998642 278999999999999999987764211 11 111223444667676666542
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 74 ~id~lv~~Ag 83 (250)
T 2fwm_X 74 RLDALVNAAG 83 (250)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999987654
No 240
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=82.79 E-value=3.5 Score=44.36 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHc---
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKE--- 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~--- 166 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.+...... ..-..+ .+-.+.+.+.+++++.
T Consensus 27 ~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 27 QQKVVVITGASQG----------IGAGLVRAYRDRNYRVVATSRSIKPSAD---PDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp TCCEEEESSCSSH----------HHHHHHHHHHHTTCEEEEEESSCCCCSS---TTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCChhhccc---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3578999998742 2789999999999999999876543221 111222 2334666666666543
Q ss_pred --CCCEEEecCC
Q 001014 167 --RPDALLPTMG 176 (1190)
Q Consensus 167 --~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 94 ~g~iD~lv~nAg 105 (260)
T 3un1_A 94 FGRIDSLVNNAG 105 (260)
T ss_dssp HSCCCEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 7999997654
No 241
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=82.78 E-value=1.5 Score=50.91 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=68.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCC---CeEEEEccCCCCCCCC-cc-------CcceEEECCCCHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEG---YEVILINSNPATIMTD-PG-------LADRTYITPMTPELVEQ 161 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G---~~vi~v~~~~~~~~~~-~~-------~ad~~~i~p~~~~~v~~ 161 (1190)
+||+|+|+|.+ |+.+++.|.+.| .+|++++.++...... .. -.....++..+.+.+.+
T Consensus 2 ~kVlIiGaGgi-----------G~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~ 70 (405)
T 4ina_A 2 AKVLQIGAGGV-----------GGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVA 70 (405)
T ss_dssp CEEEEECCSHH-----------HHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCHH-----------HHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHH
Confidence 58999999843 788999999998 3888887764321000 00 01111234446788888
Q ss_pred HHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCC-cHHHHHH----HhcHHHHHHHHHHcCCCC
Q 001014 162 VLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGA-KLDAIKK----AEDRDLFKQAMKTIGVKT 228 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~-~~~~i~~----~~DK~~~k~~l~~~Gipv 228 (1190)
+++..++|+|+.+.+........ ..+.+.|+.++-. +...... ...-..+.+.+++.|+..
T Consensus 71 ~l~~~~~DvVin~ag~~~~~~v~------~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~ 136 (405)
T 4ina_A 71 LINEVKPQIVLNIALPYQDLTIM------EACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMA 136 (405)
T ss_dssp HHHHHCCSEEEECSCGGGHHHHH------HHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEE
T ss_pred HHHhhCCCEEEECCCcccChHHH------HHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEE
Confidence 88887899999877643322221 2344567777611 1100000 001124556777888774
No 242
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=82.61 E-value=1.4 Score=48.72 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~~~d~ 170 (1190)
.|+|||+|+.. +-|..+++.|.+.|++|++++.++.. . . .+ .+-.+.+.+.++++..++|+
T Consensus 2 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~----~---~-~~~~Dl~d~~~~~~~~~~~~~d~ 63 (315)
T 2ydy_A 2 NRRVLVTGATG----------LLGRAVHKEFQQNNWHAVGCGFRRAR----P---K-FEQVNLLDSNAVHHIIHDFQPHV 63 (315)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHTTTCEEEEEC--------------------------CHHHHHHHCCSE
T ss_pred CCeEEEECCCc----------HHHHHHHHHHHhCCCeEEEEccCCCC----C---C-eEEecCCCHHHHHHHHHhhCCCE
Confidence 36899999853 33889999999999999999754332 0 1 11 11123455666676668999
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+-..+
T Consensus 64 vih~A~ 69 (315)
T 2ydy_A 64 IVHCAA 69 (315)
T ss_dssp EEECC-
T ss_pred EEECCc
Confidence 986554
No 243
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=82.51 E-value=3 Score=43.88 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHc----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKE---- 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~---- 166 (1190)
.|+|||+|+... -|+.+++.|.+.|++|++++.++. . ... ..+ .+-.+.+.+.+++++.
T Consensus 2 ~k~vlVtGasgg----------iG~~la~~l~~~G~~V~~~~r~~~--~--~~~--~~~~~D~~~~~~~~~~~~~~~~~~ 65 (242)
T 1uay_A 2 ERSALVTGGASG----------LGRAAALALKARGYRVVVLDLRRE--G--EDL--IYVEGDVTREEDVRRAVARAQEEA 65 (242)
T ss_dssp CCEEEEETTTSH----------HHHHHHHHHHHHTCEEEEEESSCC--S--SSS--EEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEEccCcc--c--cce--EEEeCCCCCHHHHHHHHHHHHhhC
Confidence 368999998742 378999999999999999987664 1 111 223 3334666666666543
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|.++...+
T Consensus 66 ~~d~li~~ag 75 (242)
T 1uay_A 66 PLFAVVSAAG 75 (242)
T ss_dssp CEEEEEECCC
T ss_pred CceEEEEccc
Confidence 7898886544
No 244
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=82.51 E-value=4.5 Score=43.53 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHH-----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~----- 165 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++... .. . ..+ .+-.+.+.+.++++.
T Consensus 8 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~---~~-~-~~~~~Dl~~~~~v~~~~~~~~~~~ 72 (264)
T 2dtx_A 8 DKVVIVTGASMG----------IGRAIAERFVDEGSKVIDLSIHDPGE---AK-Y-DHIECDVTNPDQVKASIDHIFKEY 72 (264)
T ss_dssp TCEEEEESCSSH----------HHHHHHHHHHHTTCEEEEEESSCCCS---CS-S-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEecCcccC---Cc-e-EEEEecCCCHHHHHHHHHHHHHHc
Confidence 468999998753 27899999999999999998765431 11 1 222 333456666665553
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 73 g~iD~lv~~Ag 83 (264)
T 2dtx_A 73 GSISVLVNNAG 83 (264)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 27999987654
No 245
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=82.44 E-value=6.3 Score=41.94 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCCCHHHHHHHHHHc-CC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPMTPELVEQVLEKE-RP 168 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~~~~~v~~i~~~~-~~ 168 (1190)
..|++||.|++.- | |+.+++.|.+.|.+|++++.+.+.........-..+ .+-.+.+.+.+++++. ++
T Consensus 10 ~GK~alVTGas~G-I---------G~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 10 AGQQVLVTGGSSG-I---------GAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTCEEEEETTTSH-H---------HHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCCH-H---------HHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 4689999998853 2 788999999999999999987765432221111222 3344677888888765 68
Q ss_pred CEEEecCC
Q 001014 169 DALLPTMG 176 (1190)
Q Consensus 169 d~Vip~~~ 176 (1190)
|.++..-|
T Consensus 80 DiLVNNAG 87 (242)
T 4b79_A 80 DVLVNNAG 87 (242)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99987654
No 246
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=82.41 E-value=3.2 Score=40.33 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=57.7
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcC--cccc-C------Ccceee-cCC-cHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVS--TDYD-T------SDRLYF-EPL-TVEDVL 711 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s--~~~~-~------ad~~~~-~p~-~~e~v~ 711 (1190)
.++|.|+|.+.. -|+ -+..+++.+++.||+++-+++...... ..|. + .|-..+ .|. ...+++
T Consensus 22 p~~iaVVGas~~-~g~------~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv 94 (144)
T 2d59_A 22 YKKIALVGASPK-PER------DANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYV 94 (144)
T ss_dssp CCEEEEETCCSC-TTS------HHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHH
T ss_pred CCEEEEEccCCC-CCc------hHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCHHHHHHHH
Confidence 578999999863 111 144557889999999888876543221 0111 1 111111 111 134444
Q ss_pred HHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHH
Q 001014 712 NVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPD 764 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~ 764 (1190)
+-+.+.++..++.+.+.. ...+++.++ +.| ++++||+--
T Consensus 95 ~~~~~~gi~~i~~~~g~~-~~~l~~~a~----------~~G---i~vvGpnc~ 133 (144)
T 2d59_A 95 EQAIKKGAKVVWFQYNTY-NREASKKAD----------EAG---LIIVANRCM 133 (144)
T ss_dssp HHHHHHTCSEEEECTTCC-CHHHHHHHH----------HTT---CEEEESCCH
T ss_pred HHHHHcCCCEEEECCCch-HHHHHHHHH----------HcC---CEEEcCCch
Confidence 444455677777655443 346666666 788 999987643
No 247
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=82.24 E-value=4.5 Score=38.16 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=56.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC---------ccCcceEEECCCCHH---HH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD---------PGLADRTYITPMTPE---LV 159 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~---------~~~ad~~~i~p~~~~---~v 159 (1190)
.++|+|+|+.+.. +--|..+++.|++.||+|+.+++....+.-. +. .|-..+. ...+ .+
T Consensus 4 p~siAVVGaS~~~-------~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~-~p~~~v~~~ 74 (122)
T 3ff4_A 4 MKKTLILGATPET-------NRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLY-INPQNQLSE 74 (122)
T ss_dssp CCCEEEETCCSCT-------TSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEEC-SCHHHHGGG
T ss_pred CCEEEEEccCCCC-------CCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEE-eCHHHHHHH
Confidence 3689999988531 2347889999999999999999875432211 12 3333221 1222 22
Q ss_pred HHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCc
Q 001014 160 EQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAK 204 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~ 204 (1190)
.+-|.+.++..|+...|... - .+ .++++++|++++|+.
T Consensus 75 v~e~~~~g~k~v~~~~G~~~---~--e~--~~~a~~~Girvv~nC 112 (122)
T 3ff4_A 75 YNYILSLKPKRVIFNPGTEN---E--EL--EEILSENGIEPVIGC 112 (122)
T ss_dssp HHHHHHHCCSEEEECTTCCC---H--HH--HHHHHHTTCEEEESC
T ss_pred HHHHHhcCCCEEEECCCCCh---H--HH--HHHHHHcCCeEECCc
Confidence 33334456777776555321 1 11 235677888888643
No 248
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=82.15 E-value=0.65 Score=49.14 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...++|||+|+... ||+ ++++.|.+.|++|++++.+++.
T Consensus 19 l~~~~ilVtGatG~-iG~---------~l~~~L~~~G~~V~~~~R~~~~ 57 (236)
T 3e8x_A 19 FQGMRVLVVGANGK-VAR---------YLLSELKNKGHEPVAMVRNEEQ 57 (236)
T ss_dssp --CCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESSGGG
T ss_pred cCCCeEEEECCCCh-HHH---------HHHHHHHhCCCeEEEEECChHH
Confidence 45789999998664 555 5599999999999999987654
No 249
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=81.96 E-value=1.5 Score=45.55 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCc-HHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLT-VEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~-~e~v~~i~~~~~~d~Vi 723 (1190)
||||+|+... ||+ ++++.|.+.|++|++++.++...... .-......+-.+ .+.+.+.++ ++|.||
T Consensus 2 ~ilItGatG~-iG~---------~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~--~~d~vi 68 (219)
T 3dqp_A 2 KIFIVGSTGR-VGK---------SLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQLH--GMDAII 68 (219)
T ss_dssp EEEEESTTSH-HHH---------HHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTTTT--TCSEEE
T ss_pred eEEEECCCCH-HHH---------HHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHHHc--CCCEEE
Confidence 7999997764 655 44999999999999999886543221 011111112334 566666664 588887
Q ss_pred cccC
Q 001014 724 VQFG 727 (1190)
Q Consensus 724 ~~~g 727 (1190)
-..+
T Consensus 69 ~~ag 72 (219)
T 3dqp_A 69 NVSG 72 (219)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 6554
No 250
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=81.92 E-value=5.7 Score=38.54 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=54.9
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC---------ccCcceEEECCCCHHHH---H
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD---------PGLADRTYITPMTPELV---E 160 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~---------~~~ad~~~i~p~~~~~v---~ 160 (1190)
++|+|+|.+... +.-|..+++.|++.||+++.+++....+.-. ..-.|-..+. ...+.+ .
T Consensus 23 ~~iaVVGas~~~-------g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~-vp~~~~~~vv 94 (144)
T 2d59_A 23 KKIALVGASPKP-------ERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF-VKPKLTMEYV 94 (144)
T ss_dssp CEEEEETCCSCT-------TSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC-SCHHHHHHHH
T ss_pred CEEEEEccCCCC-------CchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEE-eCHHHHHHHH
Confidence 589999997431 1237789999999999988887654321100 1112322221 122332 2
Q ss_pred HHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHH
Q 001014 161 QVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAI 208 (1190)
Q Consensus 161 ~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i 208 (1190)
+-+.+.++..++...+.. . . .+ .+.+++.|++++||+--.+
T Consensus 95 ~~~~~~gi~~i~~~~g~~-~--~--~l--~~~a~~~Gi~vvGpnc~gv 135 (144)
T 2d59_A 95 EQAIKKGAKVVWFQYNTY-N--R--EA--SKKADEAGLIIVANRCMMR 135 (144)
T ss_dssp HHHHHHTCSEEEECTTCC-C--H--HH--HHHHHHTTCEEEESCCHHH
T ss_pred HHHHHcCCCEEEECCCch-H--H--HH--HHHHHHcCCEEEcCCchhh
Confidence 223345677776554422 1 1 11 2356677888887654433
No 251
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=81.88 E-value=2.5 Score=48.01 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCCCccCcc-eEEECCC--CHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMTDPGLAD-RTYITPM--TPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~~~~~ad-~~~i~p~--~~~~v~~i~~~~ 166 (1190)
++++|||+|+.. +-|..+++.|.+. |++|++++.++........... ..+...+ +.+.+.++++
T Consensus 23 ~~~~vlVtGatG----------~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~-- 90 (372)
T 3slg_A 23 KAKKVLILGVNG----------FIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK-- 90 (372)
T ss_dssp CCCEEEEESCSS----------HHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--
T ss_pred CCCEEEEECCCC----------hHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--
Confidence 357999999753 3489999999998 9999999876643221111111 2233333 5677777776
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+|+-..+
T Consensus 91 ~~d~Vih~A~ 100 (372)
T 3slg_A 91 KCDVILPLVA 100 (372)
T ss_dssp HCSEEEECBC
T ss_pred cCCEEEEcCc
Confidence 7999986443
No 252
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=81.80 E-value=1.4 Score=50.31 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
..+.||+|||+|. +|+ .+++.|.+ .+++.+.+.+..........+...-.+-.+.+.+.++++ +.|
T Consensus 14 g~~mkilvlGaG~--vG~---------~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~D 79 (365)
T 3abi_A 14 GRHMKVLILGAGN--IGR---------AIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFE 79 (365)
T ss_dssp --CCEEEEECCSH--HHH---------HHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCS
T ss_pred CCccEEEEECCCH--HHH---------HHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCC
Confidence 3455899999977 454 44777765 578888877644332222222222223345777777775 568
Q ss_pred ccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 721 GIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 721 ~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
.||...+......+++.+- +.| ++++-.+... ..-..+.+.+++.|+..
T Consensus 80 vVi~~~p~~~~~~v~~~~~----------~~g---~~yvD~s~~~----~~~~~l~~~a~~~g~~~ 128 (365)
T 3abi_A 80 LVIGALPGFLGFKSIKAAI----------KSK---VDMVDVSFMP----ENPLELRDEAEKAQVTI 128 (365)
T ss_dssp EEEECCCGGGHHHHHHHHH----------HHT---CEEEECCCCS----SCGGGGHHHHHHTTCEE
T ss_pred EEEEecCCcccchHHHHHH----------hcC---cceEeeeccc----hhhhhhhhhhccCCcee
Confidence 8888777766667888887 788 7776543211 11123356677788765
No 253
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=81.37 E-value=4.4 Score=45.54 Aligned_cols=75 Identities=9% Similarity=0.047 Sum_probs=50.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----cCcceEE-ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-----GLADRTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----~~ad~~~-i~p~~~~~v~~i~~~ 165 (1190)
.++|||+|+.. +-|..+++.|.+.|++|++++.++....... ...-..+ .+-.+.+.+.++++.
T Consensus 9 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 78 (357)
T 1rkx_A 9 GKRVFVTGHTG----------FKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIRE 78 (357)
T ss_dssp TCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCc----------hHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHh
Confidence 36899999753 3389999999999999999987654321100 0001223 333467788888887
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+|+-..+
T Consensus 79 ~~~d~vih~A~ 89 (357)
T 1rkx_A 79 FQPEIVFHMAA 89 (357)
T ss_dssp HCCSEEEECCS
T ss_pred cCCCEEEECCC
Confidence 78999996654
No 254
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=81.33 E-value=3.3 Score=42.29 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=45.8
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc-CCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE-RPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~-~~d~V 171 (1190)
+||||+|++.. -|+.+++.|. .|++|++++.++. ....+-.+.+.+.++++.. ++|.|
T Consensus 4 M~vlVtGasg~----------iG~~~~~~l~-~g~~V~~~~r~~~----------~~~~D~~~~~~~~~~~~~~~~~d~v 62 (202)
T 3d7l_A 4 MKILLIGASGT----------LGSAVKERLE-KKAEVITAGRHSG----------DVTVDITNIDSIKKMYEQVGKVDAI 62 (202)
T ss_dssp CEEEEETTTSH----------HHHHHHHHHT-TTSEEEEEESSSS----------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred cEEEEEcCCcH----------HHHHHHHHHH-CCCeEEEEecCcc----------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence 37999998742 3889999999 9999999987653 1123334667777777654 68999
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+...+
T Consensus 63 i~~ag 67 (202)
T 3d7l_A 63 VSATG 67 (202)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 86654
No 255
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=81.24 E-value=5.2 Score=42.75 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----c
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK-----E 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~-----~ 166 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++.... . ......+-.+.+.+.+++++ .
T Consensus 21 ~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~---~-~~~~~~Dl~d~~~v~~~~~~~~~~~g 86 (253)
T 2nm0_A 21 SRSVLVTGGNRG----------IGLAIARAFADAGDKVAITYRSGEPPE---G-FLAVKCDITDTEQVEQAYKEIEETHG 86 (253)
T ss_dssp CCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSSCCCT---T-SEEEECCTTSHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCChHhhc---c-ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 468999998753 278999999999999999987654322 1 11122333466666665553 2
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 87 ~iD~lv~nAg 96 (253)
T 2nm0_A 87 PVEVLIANAG 96 (253)
T ss_dssp SCSEEEEECS
T ss_pred CCCEEEECCC
Confidence 6899986554
No 256
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=81.23 E-value=1.1 Score=50.46 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=47.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHh-CCCeEEEecCCCCCcCcccc-CCcceee--cCCcHHHHHHHhhhc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQS-AGYETIMMNSNPETVSTDYD-TSDRLYF--EPLTVEDVLNVIDLE 717 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~-~G~~vi~v~~~p~~~s~~~~-~ad~~~~--~p~~~e~v~~i~~~~ 717 (1190)
..++|||+|+|+. +..+++.++. .|.+|++++.+++....... -+|..+. ++...+.+.++....
T Consensus 163 ~g~~VlV~GaG~~-----------g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 163 PGDWQVIFGAGGL-----------GNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp TTCEEEEECCSHH-----------HHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCc-----------cHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCC
Confidence 4578999999983 3344666665 48999999988654321111 1232221 122256666666666
Q ss_pred CCCccccccCCchh
Q 001014 718 RPEGIIVQFGGQTP 731 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~ 731 (1190)
.+|.++...++...
T Consensus 232 g~d~~~~~~~~~~~ 245 (348)
T 4eez_A 232 GVQSAIVCAVARIA 245 (348)
T ss_dssp CEEEEEECCSCHHH
T ss_pred CceEEEEeccCcch
Confidence 67777766665543
No 257
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=81.19 E-value=3.5 Score=38.89 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc--c----cC--Ccceee-cC-CcHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD--Y----DT--SDRLYF-EP-LTVEDVL 711 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~--~----~~--ad~~~~-~p-~~~e~v~ 711 (1190)
+.++|.|+|+... -++ -+..+++.|++.||+++.+|+..+.+.-. | ++ .|-..+ .| ....+++
T Consensus 3 ~p~siAVVGaS~~-~~~------~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v 75 (122)
T 3ff4_A 3 AMKKTLILGATPE-TNR------YAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEY 75 (122)
T ss_dssp CCCCEEEETCCSC-TTS------HHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGH
T ss_pred CCCEEEEEccCCC-CCC------HHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHH
Confidence 4578999999864 111 25667899999999999999875443210 1 01 222111 11 1234444
Q ss_pred HHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEcc
Q 001014 712 NVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWG 760 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g 760 (1190)
+-+.+.++..|+.+.|.... ++.+.++ +.| ++++|
T Consensus 76 ~e~~~~g~k~v~~~~G~~~~-e~~~~a~----------~~G---irvv~ 110 (122)
T 3ff4_A 76 NYILSLKPKRVIFNPGTENE-ELEEILS----------ENG---IEPVI 110 (122)
T ss_dssp HHHHHHCCSEEEECTTCCCH-HHHHHHH----------HTT---CEEEE
T ss_pred HHHHhcCCCEEEECCCCChH-HHHHHHH----------HcC---CeEEC
Confidence 54555677788877665533 5666666 788 88886
No 258
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=80.83 E-value=2.5 Score=45.67 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=48.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
+|+|||+|++. +-|+.+++.|.+.|++|++++.++.... ...-..+. +-.+.+.+.++++ ++|+
T Consensus 3 ~k~vlVTGasg----------~IG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~--~~D~ 67 (267)
T 3rft_A 3 MKRLLVTGAAG----------QLGRVMRERLAPMAEILRLADLSPLDPA---GPNEECVQCDLADANAVNAMVA--GCDG 67 (267)
T ss_dssp EEEEEEESTTS----------HHHHHHHHHTGGGEEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHHHT--TCSE
T ss_pred CCEEEEECCCC----------HHHHHHHHHHHhcCCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHHHc--CCCE
Confidence 46899999754 2388999999999999999987764332 11112333 3346777887776 7999
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+-.-+
T Consensus 68 vi~~Ag 73 (267)
T 3rft_A 68 IVHLGG 73 (267)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 986544
No 259
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=80.73 E-value=6.6 Score=47.68 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=91.9
Q ss_pred ccchhHHHHHHHHHhCCCeEEEec-CCCCCcCcc--c-c----CCcceeecCCcHHHHHHHhhh-cCCCccc-c-ccCCc
Q 001014 661 EFDYCCCHTSFSLQSAGYETIMMN-SNPETVSTD--Y-D----TSDRLYFEPLTVEDVLNVIDL-ERPEGII-V-QFGGQ 729 (1190)
Q Consensus 661 efd~~~~~~~~al~~~G~~vi~v~-~~p~~~s~~--~-~----~ad~~~~~p~~~e~v~~i~~~-~~~d~Vi-~-~~g~~ 729 (1190)
|=++...-..+++++.|+++.+++ ...-....+ + + ..|.+|- -...|.+++-.++ ..++.+- + ..|..
T Consensus 391 Ed~~t~~~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lfk-lypwE~m~~~~~~~~~~~~~~~~~~~g~~ 469 (619)
T 2io8_A 391 EENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWK-TWAWETAFDQIREVSDREFAAVPIRTGHP 469 (619)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEEE-SSCHHHHHHHHHHC---CCSSCCCCSCCS
T ss_pred cchHHHHHHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEEe-cCCHHHHHHHhhhhcccccccccccccCc
Confidence 434556667788899999999997 442221111 0 0 1111221 1235666544322 2223110 0 01110
Q ss_pred h-hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcC-CC-CCCceeecCHHHHHHHHHHhC
Q 001014 730 T-PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELS-IE-QPKGGIAKSEADALAIAKEIG 806 (1190)
Q Consensus 730 ~-~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~g-Ip-~p~~~~~~s~~e~~~~~~~ig 806 (1190)
. ...+...+. +.+ +.++.|....+ ..||..+.-+.+.+. -| .+++..-.+. ++ ..
T Consensus 470 ~~g~~ll~~l~----------~~~---v~iieP~~~~l--lsNKailalLw~l~p~hp~LLpT~f~~~~-~l----~~-- 527 (619)
T 2io8_A 470 QNEVRLIDVLL----------RPE---VLVFEPLWTVI--PGNKAILPILWSLFPHHRYLLDTDFTVND-EL----VK-- 527 (619)
T ss_dssp SCCCCHHHHHT----------CTT---CEEESCGGGGT--TTSTTHHHHHHHHSTTCTTCCCEESSCCH-HH----HH--
T ss_pred cchHHHHHHHH----------hCC---CEEECHHHHHH--hhhHHHHHHHHHhCCCCCCCCCeeecCCc-cc----cc--
Confidence 0 114556666 667 89998666554 999999988887652 22 1255533332 22 11
Q ss_pred CcEEEecCcCCCCcceEEeCCHHHHHHHHHHhHhhCCCCcEEEEEecCC
Q 001014 807 YPVVVRPSYVLGGRAMEIVYTDETLVTYLENAVEVDPERPVLIDKYLSD 855 (1190)
Q Consensus 807 yPvvvKP~~~~gg~Gv~iv~~~~el~~~~~~~~~~~~~~~vliEefI~~ 855 (1190)
-..|+||.+|..|.||.++...++. +.+........+++.|+|++-
T Consensus 528 ~~yV~KPi~gReG~nV~i~~~~~~~---~~~~~~~y~~~~~IyQe~~~l 573 (619)
T 2io8_A 528 TGYAVKPIAGRCGSNIDLVSHHEEV---LDKTSGKFAEQKNIYQQLWCL 573 (619)
T ss_dssp HCEEEEETTCCTTTTCEEECTTSCE---EEECCCTTTTSCEEEEECCCC
T ss_pred CCEEEccCCCCCCCCEEEEeCCChh---HhhccccccCCCeEEEEecCC
Confidence 1489999999999999999762221 111112234567889999943
No 260
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=80.66 E-value=5 Score=45.48 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=49.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC--CCccC---------cc-eEEE-CCCCHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM--TDPGL---------AD-RTYI-TPMTPELV 159 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~--~~~~~---------ad-~~~i-~p~~~~~v 159 (1190)
++|||+|+.. +-|..+++.|.+.|++|++++.++.... ..... .. ..+. +-.+.+.+
T Consensus 25 ~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (375)
T 1t2a_A 25 NVALITGITG----------QDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 94 (375)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHH
T ss_pred cEEEEECCCc----------hHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHH
Confidence 6899999753 3388999999999999999987654211 00011 01 1222 23367788
Q ss_pred HHHHHHcCCCEEEecCC
Q 001014 160 EQVLEKERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~ 176 (1190)
.++++..++|+|+-..+
T Consensus 95 ~~~~~~~~~d~vih~A~ 111 (375)
T 1t2a_A 95 VKIINEVKPTEIYNLGA 111 (375)
T ss_dssp HHHHHHHCCSEEEECCS
T ss_pred HHHHHhcCCCEEEECCC
Confidence 88888778999986654
No 261
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=80.51 E-value=0.89 Score=53.67 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCc-ceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSD-RLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad-~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
||+|+|+|. + +.++++.|.+.|+++++++.+++....-.+.-| ..+....+-.++++-+.-++.|.++
T Consensus 5 ~iiI~G~G~--v---------G~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~i 73 (461)
T 4g65_A 5 KIIILGAGQ--V---------GGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLV 73 (461)
T ss_dssp EEEEECCSH--H---------HHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred EEEEECCCH--H---------HHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence 799999998 4 556699999999999999999876532111112 2233334445566666677888888
Q ss_pred cccCCc
Q 001014 724 VQFGGQ 729 (1190)
Q Consensus 724 ~~~g~~ 729 (1190)
...+..
T Consensus 74 a~t~~D 79 (461)
T 4g65_A 74 AVTNTD 79 (461)
T ss_dssp ECCSCH
T ss_pred EEcCCh
Confidence 766655
No 262
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=80.19 E-value=2.6 Score=44.73 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCC-CHHHHHHHHHH---
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPM-TPELVEQVLEK--- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~-~~~~v~~i~~~--- 165 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.++.... ....+ ...+ +.+.+.+++++
T Consensus 6 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~ 70 (241)
T 1dhr_A 6 EARRVLVYGGRGA----------LGSRCVQAFRARNWWVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGK 70 (241)
T ss_dssp CCCEEEEETTTSH----------HHHHHHHHHHTTTCEEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH----------HHHHHHHHHHhCCCEEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 3468999998742 278999999999999999987765322 11122 1222 34455554443
Q ss_pred ----cCCCEEEecCC
Q 001014 166 ----ERPDALLPTMG 176 (1190)
Q Consensus 166 ----~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 71 ~~~~g~iD~lv~~Ag 85 (241)
T 1dhr_A 71 LLGDQKVDAILCVAG 85 (241)
T ss_dssp HHTTCCEEEEEECCC
T ss_pred HhCCCCCCEEEEccc
Confidence 27899987655
No 263
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=79.93 E-value=2.2 Score=45.18 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHC--CCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
+++|||+|+.. +-|+.+++.|.+. |++|++++.++........-......+-.+.+.+.++++ ++|
T Consensus 4 ~~~ilVtGasG----------~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d 71 (253)
T 1xq6_A 4 LPTVLVTGASG----------RTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GID 71 (253)
T ss_dssp CCEEEEESTTS----------HHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCS
T ss_pred CCEEEEEcCCc----------HHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CCC
Confidence 46899999753 3388999999999 899999987643210000111122233346677777775 699
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
.|+...+
T Consensus 72 ~vi~~a~ 78 (253)
T 1xq6_A 72 ALVILTS 78 (253)
T ss_dssp EEEECCC
T ss_pred EEEEecc
Confidence 9986654
No 264
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=79.88 E-value=3.8 Score=44.31 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc---cCcceEE-ECCCCHHHHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP---GLADRTY-ITPMTPELVEQ 161 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~---~~ad~~~-i~p~~~~~v~~ 161 (1190)
|......|++||.|++.- -|+.+++.|.+.|++|++++.+........ ...-..+ .+-.+.+.+.+
T Consensus 5 m~~~l~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 74 (271)
T 3tzq_B 5 MTAELENKVAIITGACGG----------IGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRA 74 (271)
T ss_dssp --CTTTTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHH
T ss_pred CCcCCCCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHH
Confidence 333445679999998742 278999999999999999987654211000 0001222 33346666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|.++..-+
T Consensus 75 ~~~~~~~~~g~id~lv~nAg 94 (271)
T 3tzq_B 75 LIDFTIDTFGRLDIVDNNAA 94 (271)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 66532 7999986554
No 265
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=79.81 E-value=2.2 Score=48.02 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=44.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccC-Ccceee--cCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDT-SDRLYF--EPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~-ad~~~~--~p~~~e~v~~i~~~~ 717 (1190)
...++|||+|+|+ +|+ .+++.++.+|.+|++++.+++....-..+ +|..+. .+...+.+.+ .. .
T Consensus 165 ~~g~~VlV~GaG~--vG~---------~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~-~~-g 231 (340)
T 3s2e_A 165 RPGQWVVISGIGG--LGH---------VAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQK-EI-G 231 (340)
T ss_dssp CTTSEEEEECCST--THH---------HHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHH-HH-S
T ss_pred CCCCEEEEECCCH--HHH---------HHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHH-hC-C
Confidence 3567899999988 444 55888889999999998875443211111 222221 1111334444 21 2
Q ss_pred CCCccccccCCch
Q 001014 718 RPEGIIVQFGGQT 730 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~ 730 (1190)
++|.|+-..++..
T Consensus 232 ~~d~vid~~g~~~ 244 (340)
T 3s2e_A 232 GAHGVLVTAVSPK 244 (340)
T ss_dssp SEEEEEESSCCHH
T ss_pred CCCEEEEeCCCHH
Confidence 6787776665443
No 266
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=79.72 E-value=1.2 Score=50.08 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCcceee--cCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSDRLYF--EPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad~~~~--~p~~~e~v~~i~~~~ 717 (1190)
...++|||+|+|.. +|+ .+++.++.+|.+|++++.+++....-.. -+|..+. .+...+.+.+.....
T Consensus 143 ~~g~~VlV~Ga~g~-iG~---------~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 143 QRNDVLLVNACGSA-IGH---------LFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp CTTCEEEESSTTSH-HHH---------HHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCccH-HHH---------HHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCC
Confidence 35679999998842 444 4578888899999999887765322111 1222211 112245566666556
Q ss_pred CCCccccccCCchhhhhh
Q 001014 718 RPEGIIVQFGGQTPLKLS 735 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la 735 (1190)
++|.|+-..|+......+
T Consensus 213 g~Dvvid~~g~~~~~~~~ 230 (340)
T 3gms_A 213 GADAAIDSIGGPDGNELA 230 (340)
T ss_dssp CEEEEEESSCHHHHHHHH
T ss_pred CCcEEEECCCChhHHHHH
Confidence 789888777766443333
No 267
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=79.66 E-value=10 Score=43.32 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV 690 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~ 690 (1190)
...+++|.|+|.. +..+++.++.+||+|+++|+.++..
T Consensus 203 P~~rL~IfGAGhv-----------a~ala~~a~~lg~~V~v~D~R~~~~ 240 (386)
T 2we8_A 203 PRPRMLVFGAIDF-----------AAAVAQQGAFLGYRVTVCDARPVFA 240 (386)
T ss_dssp CCCEEEEECCSTH-----------HHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEECCchhhc
Confidence 4579999999994 5666999999999999999987743
No 268
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=79.53 E-value=3.6 Score=44.41 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=45.9
Q ss_pred CCCEEEEEcC---CccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCC----CCC-ccCcceEEECCCCHHHHHHH
Q 001014 91 DLRKILILGA---GPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATI----MTD-PGLADRTYITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~---G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~----~~~-~~~ad~~~i~p~~~~~v~~i 162 (1190)
..|+|||+|+ |.+ |+.+++.|.+.|++|++++.++... ... ..-......+-.+.+.+.++
T Consensus 6 ~~k~vlVTGa~~s~gI-----------G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (269)
T 2h7i_A 6 DGKRILVSGIITDSSI-----------AFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASL 74 (269)
T ss_dssp TTCEEEECCCSSTTSH-----------HHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCch-----------HHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHH
Confidence 4578999996 433 7889999999999999998665210 000 00011111333456666655
Q ss_pred HHHc--------CCCEEEecCC
Q 001014 163 LEKE--------RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~--------~~d~Vip~~~ 176 (1190)
+++. ++|+++..-+
T Consensus 75 ~~~~~~~~g~~~~iD~lv~nAg 96 (269)
T 2h7i_A 75 AGRVTEAIGAGNKLDGVVHSIG 96 (269)
T ss_dssp HHHHHHHHCTTCCEEEEEECCC
T ss_pred HHHHHHHhCCCCCceEEEECCc
Confidence 5532 6888886554
No 269
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=79.49 E-value=0.67 Score=49.04 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEEECCCCHHHHHHHHHHcCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTYITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~i~p~~~~~v~~i~~~~~~d 169 (1190)
..|+|||+|+.. +-|+.+++.|.+.|++|++++.++........ -....+...++ +.+.+.+. ++|
T Consensus 20 ~~~~ilVtGatG----------~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~--~~D 86 (236)
T 3e8x_A 20 QGMRVLVVGANG----------KVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLE-EDFSHAFA--SID 86 (236)
T ss_dssp -CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT-SCCGGGGT--TCS
T ss_pred CCCeEEEECCCC----------hHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccH-HHHHHHHc--CCC
Confidence 356999999853 33899999999999999999876542110000 01033333444 33333333 799
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
+|+...+
T Consensus 87 ~vi~~ag 93 (236)
T 3e8x_A 87 AVVFAAG 93 (236)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9987665
No 270
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=79.46 E-value=1.7 Score=48.42 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=44.0
Q ss_pred CCCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccc--cC--Ccce--e-ecCCcHHHHH
Q 001014 639 APTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDY--DT--SDRL--Y-FEPLTVEDVL 711 (1190)
Q Consensus 639 ~~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~--~~--ad~~--~-~~p~~~e~v~ 711 (1190)
.+...++|||+|+... ||+ ++++.|.+.|++|++++.++....... .. .... + .+-.+.+.+.
T Consensus 10 ~~~~~~~vlVTGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 79 (335)
T 1rpn_A 10 HGSMTRSALVTGITGQ-DGA---------YLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQ 79 (335)
T ss_dssp -----CEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHH
T ss_pred ccccCCeEEEECCCCh-HHH---------HHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHH
Confidence 4567899999998774 555 559999999999999987764321000 00 0111 1 1223456666
Q ss_pred HHhhhcCCCcccc
Q 001014 712 NVIDLERPEGIIV 724 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~ 724 (1190)
++++..++|.||-
T Consensus 80 ~~~~~~~~d~Vih 92 (335)
T 1rpn_A 80 RAVIKAQPQEVYN 92 (335)
T ss_dssp HHHHHHCCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 6666666777764
No 271
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=79.43 E-value=0.85 Score=53.82 Aligned_cols=113 Identities=10% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCccee-ecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSDRLY-FEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad~~~-~~p~~~e~v~~i~~~~~~ 719 (1190)
..++|+|+|||.. +..+++.|.+ ++++.++..+++....-.. +.+..+ ....+-.+++.-+.-++.
T Consensus 234 ~~~~v~I~GgG~i-----------g~~lA~~L~~-~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~ 301 (461)
T 4g65_A 234 PYRRIMIVGGGNI-----------GASLAKRLEQ-TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQV 301 (461)
T ss_dssp CCCEEEEECCSHH-----------HHHHHHHHTT-TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGC
T ss_pred cccEEEEEcchHH-----------HHHHHHHhhh-cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhh
Confidence 3479999999984 5666888854 6899999887654221000 111111 122334456666666778
Q ss_pred CccccccCCch-hhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 720 EGIIVQFGGQT-PLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 720 d~Vi~~~g~~~-~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
|.++...+... ++-.+.... +.| ++ .++.+..|. ....++++.|+..
T Consensus 302 D~~ia~T~~De~Ni~~~llAk----------~~g---v~------kvIa~vn~~-~~~~l~~~~gid~ 349 (461)
T 4g65_A 302 DVFIALTNEDETNIMSAMLAK----------RMG---AK------KVMVLIQRG-AYVDLVQGGVIDV 349 (461)
T ss_dssp SEEEECCSCHHHHHHHHHHHH----------HTT---CS------EEEEECSCH-HHHHHHCSSSSCE
T ss_pred cEEEEcccCcHHHHHHHHHHH----------HcC---Cc------ccccccccc-chhhhhhccccce
Confidence 88888777663 433333333 556 21 223333333 3445667788775
No 272
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=79.25 E-value=2.3 Score=45.32 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=48.4
Q ss_pred CCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc----Ccc-eEE-ECCCCHHHH
Q 001014 87 GKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG----LAD-RTY-ITPMTPELV 159 (1190)
Q Consensus 87 ~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~----~ad-~~~-i~p~~~~~v 159 (1190)
|.....|++||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+
T Consensus 2 ~~~l~~k~~lVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~ 71 (247)
T 2jah_A 2 PSALQGKVALITGASSG----------IGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGV 71 (247)
T ss_dssp -CTTTTCEEEEESCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CccCCCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 33334579999998742 27899999999999999998764311000 00 011 122 233456666
Q ss_pred HHHHHH-----cCCCEEEecCC
Q 001014 160 EQVLEK-----ERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~-----~~~d~Vip~~~ 176 (1190)
.+++++ .++|+++..-+
T Consensus 72 ~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 72 DAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp HHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 665543 27999986554
No 273
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=79.14 E-value=6.1 Score=41.93 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++.... ... ....+-.+.+.+.+++++
T Consensus 14 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~-~~~~D~~~~~~~~~~~~~~~~~~ 79 (247)
T 1uzm_A 14 VSRSVLVTGGNRG----------IGLAIAQRLAADGHKVAVTHRGSGAPK---GLF-GVEVDVTDSDAVDRAFTAVEEHQ 79 (247)
T ss_dssp CCCEEEETTTTSH----------HHHHHHHHHHHTTCEEEEEESSSCCCT---TSE-EEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCChHHHH---Hhc-CeeccCCCHHHHHHHHHHHHHHc
Confidence 3478999998742 278999999999999999987654322 111 122333466666665553
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 80 g~id~lv~~Ag 90 (247)
T 1uzm_A 80 GPVEVLVSNAG 90 (247)
T ss_dssp SSCSEEEEECS
T ss_pred CCCCEEEECCC
Confidence 26899986654
No 274
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=78.95 E-value=7.6 Score=42.05 Aligned_cols=72 Identities=13% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
|||||+|+.. +-|..+++.|.+. |++|+++..++..........-..+. +-.+.+.+.+.++ ++|.
T Consensus 1 M~ilVtGatG----------~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~ 68 (289)
T 3e48_A 1 MNIMLTGATG----------HLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK--GMDT 68 (289)
T ss_dssp CCEEEETTTS----------HHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT--TCSE
T ss_pred CEEEEEcCCc----------hHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh--CCCE
Confidence 3799999753 3388999999998 99999998776532211111112333 3346677777765 7999
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+-..+
T Consensus 69 vi~~a~ 74 (289)
T 3e48_A 69 VVFIPS 74 (289)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 986654
No 275
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=78.88 E-value=2.5 Score=45.46 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc-----Ccc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG-----LAD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~-----~ad-~~~-i~p~~~~~v~~i 162 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.++
T Consensus 6 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 6 SGKVAVITGSSSG----------IGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp TTCEEEEESCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 4578999998742 27899999999999999998764311000 00 011 112 233456666665
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|+++...+
T Consensus 76 ~~~~~~~~g~id~lv~~Ag 94 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAG 94 (263)
T ss_dssp HHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 5532 7899986654
No 276
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=78.62 E-value=7.1 Score=42.48 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----------c-Ccce-EE-ECCCCH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-----------G-LADR-TY-ITPMTP 156 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----------~-~ad~-~~-i~p~~~ 156 (1190)
..|++||+|++.- | |+.+++.|.+.|++|++++.+........ . -... .+ .+-.+.
T Consensus 8 ~~k~vlVTGas~G-I---------G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (285)
T 3sc4_A 8 RGKTMFISGGSRG-I---------GLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDG 77 (285)
T ss_dssp TTCEEEEESCSSH-H---------HHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSH
T ss_pred CCCEEEEECCCCH-H---------HHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence 4579999998743 2 78899999999999999987764321100 0 0111 12 233356
Q ss_pred HHHHHHHHHc-----CCCEEEecCC
Q 001014 157 ELVEQVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 157 ~~v~~i~~~~-----~~d~Vip~~~ 176 (1190)
+.+.+++++. ++|+++..-+
T Consensus 78 ~~v~~~~~~~~~~~g~id~lvnnAg 102 (285)
T 3sc4_A 78 DAVAAAVAKTVEQFGGIDICVNNAS 102 (285)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6666655532 7898886554
No 277
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=78.46 E-value=7.9 Score=41.37 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceEE-----ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRTY-----ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~-----i~p~~~~~v~~i~~~ 165 (1190)
.++|+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+....+ +.-...+.+.+.+++
T Consensus 31 ~~~VlVvG~Gg~-----------G~~va~~La~~Gv~~i~lvD~d~v~~s---Nl~Rq~l~~~~diG~~Ka~~~~~~l~~ 96 (249)
T 1jw9_B 31 DSRVLIVGLGGL-----------GCAASQYLASAGVGNLTLLDFDTVSLS---NLQRQTLHSDATVGQPKVESARDALTR 96 (249)
T ss_dssp HCEEEEECCSHH-----------HHHHHHHHHHHTCSEEEEECCCBCCGG---GGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred CCeEEEEeeCHH-----------HHHHHHHHHHcCCCeEEEEcCCCcccc---cCCcccccChhhcCcHHHHHHHHHHHH
Confidence 359999999975 7889999999998 7888887652211 1111111 111123455555666
Q ss_pred cCCCEEEecCCChh-HHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCCe
Q 001014 166 ERPDALLPTMGGQT-ALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPPS 231 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~-~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~~ 231 (1190)
.+++.-+..+.... ..+. ..++..+.+-+...+... .|....+.+.+.|+|....
T Consensus 97 ~np~~~v~~~~~~~~~~~~------~~~~~~~DvVi~~~d~~~-----~~~~l~~~~~~~~~p~i~~ 152 (249)
T 1jw9_B 97 INPHIAITPVNALLDDAEL------AALIAEHDLVLDCTDNVA-----VRNQLNAGCFAAKVPLVSG 152 (249)
T ss_dssp HCTTSEEEEECSCCCHHHH------HHHHHTSSEEEECCSSHH-----HHHHHHHHHHHHTCCEEEE
T ss_pred HCCCcEEEEEeccCCHhHH------HHHHhCCCEEEEeCCCHH-----HHHHHHHHHHHcCCCEEEe
Confidence 66654332222111 1111 223555565555443322 3555666777788775443
No 278
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=78.29 E-value=3.8 Score=44.14 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC--------CccCcceEE-ECCCCHHHHH
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT--------DPGLADRTY-ITPMTPELVE 160 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~--------~~~~ad~~~-i~p~~~~~v~ 160 (1190)
...|++||.|++.- -|+.+++.|.+.|++|++++.++..... .....-..+ .+-.+.+.+.
T Consensus 6 l~~k~~lVTGas~G----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~ 75 (265)
T 3lf2_A 6 LSEAVAVVTGGSSG----------IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVR 75 (265)
T ss_dssp CTTCEEEEETCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHH
Confidence 34679999998742 2789999999999999999876431100 000001112 3334666666
Q ss_pred HHHHH-----cCCCEEEecCC
Q 001014 161 QVLEK-----ERPDALLPTMG 176 (1190)
Q Consensus 161 ~i~~~-----~~~d~Vip~~~ 176 (1190)
+++++ .++|+++..-+
T Consensus 76 ~~~~~~~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 76 AFAEACERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHHHHHHHCSCSEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 65543 27899886554
No 279
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=78.18 E-value=1.5 Score=46.37 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=29.1
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.|+|||+|| +|..++..|++.|++|++++..+.
T Consensus 4 dV~IIGaGp-----------aGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGI-----------AGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSH-----------HHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCH-----------HHHHHHHHHHHCCCCEEEEECCCC
Confidence 599999997 489999999999999999986543
No 280
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=78.09 E-value=4 Score=45.43 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=46.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~V 171 (1190)
++|||+|+.. +-|..+++.|.+.|++|++++.++..........-..+. +-.+.+.+.++++ ++|+|
T Consensus 14 M~ilVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v 81 (342)
T 2x4g_A 14 VKYAVLGATG----------LLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGV 81 (342)
T ss_dssp CEEEEESTTS----------HHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEE
T ss_pred CEEEEECCCc----------HHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc--CCCEE
Confidence 4899999753 338999999999999999998765432100000012232 3346677777665 69999
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+-..+
T Consensus 82 ih~a~ 86 (342)
T 2x4g_A 82 IFSAG 86 (342)
T ss_dssp EEC--
T ss_pred EECCc
Confidence 86544
No 281
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=78.09 E-value=2.9 Score=44.33 Aligned_cols=65 Identities=28% Similarity=0.284 Sum_probs=45.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC---CHHHHHHHHHHc--C
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM---TPELVEQVLEKE--R 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~---~~~~v~~i~~~~--~ 167 (1190)
|+|||+|+.. +-|+.+++.|.+.|++|++++.++..... + ... +.+.+.+++++. +
T Consensus 2 k~vlVtGasg----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~----~~~D~~~~~~~~~~~~~~~~~ 62 (255)
T 2dkn_A 2 SVIAITGSAS----------GIGAALKELLARAGHTVIGIDRGQADIEA-----D----LSTPGGRETAVAAVLDRCGGV 62 (255)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESSSSSEEC-----C----TTSHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCc----------HHHHHHHHHHHhCCCEEEEEeCChhHccc-----c----ccCCcccHHHHHHHHHHcCCC
Confidence 5899999864 23889999999999999999876543210 0 112 234566666654 8
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|+|+...+
T Consensus 63 ~d~vi~~Ag 71 (255)
T 2dkn_A 63 LDGLVCCAG 71 (255)
T ss_dssp CSEEEECCC
T ss_pred ccEEEECCC
Confidence 999997654
No 282
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=78.08 E-value=2.2 Score=46.00 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=31.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...|+|||.|++.. ||+. +++.|.+.|++|++++.+++.
T Consensus 26 ~~~k~vlVTGas~g-IG~a---------ia~~l~~~G~~V~~~~r~~~~ 64 (260)
T 3un1_A 26 NQQKVVVITGASQG-IGAG---------LVRAYRDRNYRVVATSRSIKP 64 (260)
T ss_dssp TTCCEEEESSCSSH-HHHH---------HHHHHHHTTCEEEEEESSCCC
T ss_pred cCCCEEEEeCCCCH-HHHH---------HHHHHHHCCCEEEEEeCChhh
Confidence 45689999998774 6554 499999999999999887654
No 283
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=77.89 E-value=1.6 Score=47.10 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=45.7
Q ss_pred CCCEEEEEcCC---ccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc----Cc-ceEE-ECCCCHHHHHH
Q 001014 91 DLRKILILGAG---PIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG----LA-DRTY-ITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G---~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~----~a-d~~~-i~p~~~~~v~~ 161 (1190)
..|+|||+|++ .+ |+.+++.|.+.|++|++++.++........ .. -..+ .+-.+.+.+.+
T Consensus 7 ~~k~vlVTGas~~~gI-----------G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 75 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSL-----------GFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDA 75 (261)
T ss_dssp TTCEEEEESCCSSSSH-----------HHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcH-----------HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 45789999974 33 788999999999999999766420000000 00 1222 23335666665
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|+++..-+
T Consensus 76 ~~~~~~~~~g~iD~lv~~Ag 95 (261)
T 2wyu_A 76 LFAGVKEAFGGLDYLVHAIA 95 (261)
T ss_dssp HHHHHHHHHSSEEEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 55532 6888886554
No 284
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=77.85 E-value=1.5 Score=43.37 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=57.2
Q ss_pred cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1013 TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1013 ~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.+.|++ |++.+|-+.+|-
T Consensus 9 V~IimgS~SD~~v~~~a~~~l~~~gi~~e--v~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp 76 (169)
T 3trh_A 9 VAILMGSDSDLSTMETAFTELKSLGIPFE--AHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA 76 (169)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH
T ss_pred EEEEECcHHhHHHHHHHHHHHHHcCCCEE--EEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH
Confidence 67789999999988877777778888876 67778999999999999999999998 888888887774
No 285
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=77.73 E-value=1.5 Score=48.90 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=79.8
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
++-||+|||.|. +|+.. ++.+.+. +++++ +.+.+++.... .+++. + ...++.++++..++
T Consensus 9 ~~~~igiIG~G~--~g~~~---------~~~l~~~~~~~~v~v~d~~~~~~~~---~~~~~---~-~~~~~~~~l~~~~~ 70 (315)
T 3c1a_A 9 SPVRLALIGAGR--WGKNY---------IRTIAGLPGAALVRLASSNPDNLAL---VPPGC---V-IESDWRSVVSAPEV 70 (315)
T ss_dssp CCEEEEEEECTT--TTTTH---------HHHHHHCTTEEEEEEEESCHHHHTT---CCTTC---E-EESSTHHHHTCTTC
T ss_pred CcceEEEECCcH--HHHHH---------HHHHHhCCCcEEEEEEeCCHHHHHH---HHhhC---c-ccCCHHHHhhCCCC
Confidence 346899999987 67654 6777765 67765 56666543221 12220 1 11223344555679
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCC---CceeecCHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQP---KGGIAKSEA 796 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p---~~~~~~s~~ 796 (1190)
|.|++.........++..+- +.| .+++.-.|-+.. ..+-..+.+.+++.|+..- .........
T Consensus 71 D~V~i~tp~~~h~~~~~~al----------~~G---k~v~~eKP~~~~-~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~ 136 (315)
T 3c1a_A 71 EAVIIATPPATHAEITLAAI----------ASG---KAVLVEKPLTLD-LAEAEAVAAAAKATGVMVWVEHTQLFNPAWE 136 (315)
T ss_dssp CEEEEESCGGGHHHHHHHHH----------HTT---CEEEEESSSCSC-HHHHHHHHHHHHHHCCCEEEECGGGGCHHHH
T ss_pred CEEEEeCChHHHHHHHHHHH----------HCC---CcEEEcCCCcCC-HHHHHHHHHHHHHcCCEEEEeechhcCHHHH
Confidence 99998887766556666554 667 555533222221 1223345566778887642 122223345
Q ss_pred HHHHHHHHhCCcEEEecC
Q 001014 797 DALAIAKEIGYPVVVRPS 814 (1190)
Q Consensus 797 e~~~~~~~igyPvvvKP~ 814 (1190)
.+.+.++.+|-+..++-.
T Consensus 137 ~~~~~i~~lG~i~~v~~~ 154 (315)
T 3c1a_A 137 ALKADLTSIGPILAVRSE 154 (315)
T ss_dssp HHHHTHHHHCSEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEE
Confidence 556555578877766644
No 286
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=77.65 E-value=2.1 Score=47.80 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=44.9
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCccee---ecCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLY---FEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~---~~p~~~e~v~~i~~~~ 717 (1190)
...++|||+|+... ||+ ++++.|.+.|++|++++.++.............. .+-.+.+.+.++++..
T Consensus 19 ~~~~~vlVTGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (333)
T 2q1w_A 19 SHMKKVFITGICGQ-IGS---------HIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDL 88 (333)
T ss_dssp --CCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccH-HHH---------HHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhcc
Confidence 35689999998664 555 5589999999999999876532211100001111 1223456666776666
Q ss_pred CCCccccc
Q 001014 718 RPEGIIVQ 725 (1190)
Q Consensus 718 ~~d~Vi~~ 725 (1190)
++|.||-.
T Consensus 89 ~~D~vih~ 96 (333)
T 2q1w_A 89 QPDAVVHT 96 (333)
T ss_dssp CCSEEEEC
T ss_pred CCcEEEEC
Confidence 68887743
No 287
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=77.52 E-value=9.6 Score=41.34 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|......|++||+|++.- -|+.+++.|.+.|++|++++.++
T Consensus 5 m~~~l~~k~~lVTGas~g----------IG~aia~~la~~G~~V~~~~~~~ 45 (286)
T 3uve_A 5 MTGRVEGKVAFVTGAARG----------QGRSHAVRLAQEGADIIAVDICK 45 (286)
T ss_dssp -CCTTTTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCcccCCCEEEEeCCCch----------HHHHHHHHHHHCCCeEEEEeccc
Confidence 333445689999998753 27899999999999999998763
No 288
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=77.48 E-value=3.3 Score=44.93 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=45.4
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
++|||+|+.. +-|..+++.|.+.|++|++++.... +-.+.+.+.++++..++|+|+
T Consensus 6 m~ilVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~--------------D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANG----------QLGKQLQEELNPEEYDIYPFDKKLL--------------DITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTS----------HHHHHHHHHSCTTTEEEEEECTTTS--------------CTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCC----------HHHHHHHHHHHhCCCEEEEeccccc--------------CCCCHHHHHHHHHhcCCCEEE
Confidence 3899999743 3389999999999999999976221 112567788888877899998
Q ss_pred ecCC
Q 001014 173 PTMG 176 (1190)
Q Consensus 173 p~~~ 176 (1190)
-..+
T Consensus 62 ~~a~ 65 (287)
T 3sc6_A 62 HCAA 65 (287)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 6544
No 289
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=77.48 E-value=8 Score=41.30 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPE 688 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~ 688 (1190)
..++|+|+|.|.. +..+++.|.+.|+ ++.++|.+.-
T Consensus 30 ~~~~VlVvG~Gg~-----------G~~va~~La~~Gv~~i~lvD~d~v 66 (249)
T 1jw9_B 30 KDSRVLIVGLGGL-----------GCAASQYLASAGVGNLTLLDFDTV 66 (249)
T ss_dssp HHCEEEEECCSHH-----------HHHHHHHHHHHTCSEEEEECCCBC
T ss_pred hCCeEEEEeeCHH-----------HHHHHHHHHHcCCCeEEEEcCCCc
Confidence 4578999999984 5666999999998 7778887653
No 290
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=77.44 E-value=2.1 Score=47.76 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-C----Ccce--e-ecCCcHHHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-T----SDRL--Y-FEPLTVEDVLNV 713 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~----ad~~--~-~~p~~~e~v~~i 713 (1190)
.+++|||+|+... ||+ ++++.|.+.|++|++++.++........ . .... + .+-.+.+.+.++
T Consensus 4 ~~~~vlVTGatG~-iG~---------~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (341)
T 3enk_A 4 TKGTILVTGGAGY-IGS---------HTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARI 73 (341)
T ss_dssp SSCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHH
T ss_pred CCcEEEEecCCcH-HHH---------HHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHH
Confidence 4579999998664 555 5599999999999999876544321000 0 0011 1 112345666666
Q ss_pred hhhcCCCccc
Q 001014 714 IDLERPEGII 723 (1190)
Q Consensus 714 ~~~~~~d~Vi 723 (1190)
++..++|.|+
T Consensus 74 ~~~~~~d~vi 83 (341)
T 3enk_A 74 FDAHPITAAI 83 (341)
T ss_dssp HHHSCCCEEE
T ss_pred HhccCCcEEE
Confidence 6666677666
No 291
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=77.42 E-value=12 Score=41.06 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
+.+||.|||.|.. |..+++.|.+.|++|++++.++.
T Consensus 6 ~~~~I~iIG~G~m-----------G~~~a~~l~~~G~~V~~~dr~~~ 41 (303)
T 3g0o_A 6 TDFHVGIVGLGSM-----------GMGAARSCLRAGLSTWGADLNPQ 41 (303)
T ss_dssp -CCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCeEEEECCCHH-----------HHHHHHHHHHCCCeEEEEECCHH
Confidence 3469999999954 78899999999999999987653
No 292
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=77.32 E-value=3.2 Score=45.25 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=45.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|||||+|+.. +-|..+++.|. .|++|++++.++.... .+-.+.+.+.++++..++|+|+
T Consensus 1 m~ilVtGatG----------~iG~~l~~~L~-~g~~V~~~~r~~~~~~----------~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTG----------QVGWELQRSLA-PVGNLIALDVHSKEFC----------GDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTS----------HHHHHHHHHTT-TTSEEEEECTTCSSSC----------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCC----------HHHHHHHHHhh-cCCeEEEecccccccc----------ccCCCHHHHHHHHHhcCCCEEE
Confidence 3899999843 33889999999 8999999986652111 1223567788888777899998
Q ss_pred ecCC
Q 001014 173 PTMG 176 (1190)
Q Consensus 173 p~~~ 176 (1190)
-..+
T Consensus 60 h~a~ 63 (299)
T 1n2s_A 60 NAAA 63 (299)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 6654
No 293
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=77.29 E-value=4.5 Score=48.92 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=68.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
++|+|+|.|.. |..+++.|.+.|++|++++.|+..... .. ..+....+.+.+++-+.-.+.|.++
T Consensus 349 ~~viIiG~G~~-----------G~~la~~L~~~g~~v~vid~d~~~~~~---~~-~~i~gD~t~~~~L~~agi~~ad~vi 413 (565)
T 4gx0_A 349 ELIFIIGHGRI-----------GCAAAAFLDRKPVPFILIDRQESPVCN---DH-VVVYGDATVGQTLRQAGIDRASGII 413 (565)
T ss_dssp CCEEEECCSHH-----------HHHHHHHHHHTTCCEEEEESSCCSSCC---SS-CEEESCSSSSTHHHHHTTTSCSEEE
T ss_pred CCEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECChHHHhh---cC-CEEEeCCCCHHHHHhcCccccCEEE
Confidence 78999999965 789999999999999999999886542 22 4444444444444445667899999
Q ss_pred ecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 173 PTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 173 p~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
...+.. ..|.... -.+.++|.. ...+..+.|.... +.++++|+.
T Consensus 414 ~~~~~d-~~ni~~~----~~ak~l~~~-----~~iiar~~~~~~~-~~l~~~G~d 457 (565)
T 4gx0_A 414 VTTNDD-STNIFLT----LACRHLHSH-----IRIVARANGEENV-DQLYAAGAD 457 (565)
T ss_dssp ECCSCH-HHHHHHH----HHHHHHCSS-----SEEEEEESSTTSH-HHHHHHTCS
T ss_pred EECCCc-hHHHHHH----HHHHHHCCC-----CEEEEEECCHHHH-HHHHHcCCC
Confidence 888754 3333331 233444432 1223344444332 355667765
No 294
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=77.28 E-value=3 Score=44.52 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
..|+|||+|++.. ||+. +++.|.+.|++|++++.+++
T Consensus 6 ~~k~vlVTGas~g-iG~~---------ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 6 SGKNVWVTGAGKG-IGYA---------TALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp TTCEEEEESTTSH-HHHH---------HHHHHHHTTCEEEEEESCCC
T ss_pred CCCEEEEeCCCcH-HHHH---------HHHHHHHCCCEEEEEeCchh
Confidence 4689999998764 6554 49999999999999988765
No 295
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=77.24 E-value=1.4 Score=52.53 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 639 APTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 639 ~~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.+++++||+|||||. ++..+++.|++.+++|++|+.++.
T Consensus 38 ~~~~KprVVIIGgG~-----------AGl~~A~~L~~~~~~VtLId~~~~ 76 (502)
T 4g6h_A 38 QHSDKPNVLILGSGW-----------GAISFLKHIDTKKYNVSIISPRSY 76 (502)
T ss_dssp CSCSSCEEEEECSSH-----------HHHHHHHHSCTTTCEEEEEESSSE
T ss_pred CCCCCCCEEEECCcH-----------HHHHHHHHhhhCCCcEEEECCCCC
Confidence 356788999999997 478889999999999999998763
No 296
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=77.22 E-value=1.9 Score=46.30 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC-cc-eEE-ECCCCHHHHHHHHHH
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL-AD-RTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~-ad-~~~-i~p~~~~~v~~i~~~ 165 (1190)
...|+|||+|++.- -|+.+++.|.+.|++|++++.+....... ... .. ..+ .+-.+.+.+.+++++
T Consensus 6 l~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 75 (259)
T 4e6p_A 6 LEGKSALITGSARG----------IGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAA 75 (259)
T ss_dssp TTTCEEEEETCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHH
Confidence 34579999998742 27899999999999999998654311000 000 01 122 333466666666554
Q ss_pred c-----CCCEEEecCC
Q 001014 166 E-----RPDALLPTMG 176 (1190)
Q Consensus 166 ~-----~~d~Vip~~~ 176 (1190)
. ++|.++..-+
T Consensus 76 ~~~~~g~id~lv~~Ag 91 (259)
T 4e6p_A 76 TVEHAGGLDILVNNAA 91 (259)
T ss_dssp HHHHSSSCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 3 7999986554
No 297
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=77.22 E-value=1.7 Score=43.22 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=57.8
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.++-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.+.|++ |++.+|.+.+|-
T Consensus 9 ~V~IimgS~SD~~v~~~a~~~L~~~gi~~e--v~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp 77 (174)
T 3lp6_A 9 RVGVIMGSDSDWPVMADAAAALAEFDIPAE--VRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP 77 (174)
T ss_dssp SEEEEESCGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEE--EEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH
Confidence 467889999999988877777777888866 67778999999999999999999998 888888887774
No 298
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=77.11 E-value=10 Score=36.52 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=55.2
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC--CCCCCC---C------ccCcceEEECCCCHHHH--
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN--PATIMT---D------PGLADRTYITPMTPELV-- 159 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~--~~~~~~---~------~~~ad~~~i~p~~~~~v-- 159 (1190)
++|+|+|.+... +.-|..+++.|++.||+++-+++. ...+.- . ..-.|-..+. ...+.+
T Consensus 14 ~~vaVvGas~~~-------g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~-vp~~~~~~ 85 (140)
T 1iuk_A 14 KTIAVLGAHKDP-------SRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF-RPPSALMD 85 (140)
T ss_dssp CEEEEETCCSST-------TSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC-SCHHHHTT
T ss_pred CEEEEECCCCCC-------CChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEE-eCHHHHHH
Confidence 589999996421 123778999999999998888876 322110 0 1112222221 122322
Q ss_pred -HHHHHHcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHH
Q 001014 160 -EQVLEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAI 208 (1190)
Q Consensus 160 -~~i~~~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i 208 (1190)
.+-+.+.++..++...+... . .+ .+.++++|++++||+--.+
T Consensus 86 v~~~~~~~gi~~i~~~~g~~~-~----~~--~~~a~~~Gir~vgpnc~g~ 128 (140)
T 1iuk_A 86 HLPEVLALRPGLVWLQSGIRH-P----EF--EKALKEAGIPVVADRCLMV 128 (140)
T ss_dssp THHHHHHHCCSCEEECTTCCC-H----HH--HHHHHHTTCCEEESCCHHH
T ss_pred HHHHHHHcCCCEEEEcCCcCH-H----HH--HHHHHHcCCEEEcCCccce
Confidence 22233456666665554321 1 11 2356678888888654433
No 299
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=77.05 E-value=1.6 Score=47.45 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=29.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
++||||+|+|.+ |..+++.|.+.|++|++++.++.
T Consensus 5 ~~~ilVtGaG~i-----------G~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 5 TGTLLSFGHGYT-----------ARVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CCEEEEETCCHH-----------HHHHHHHHGGGTCEEEEEESCGG
T ss_pred cCcEEEECCcHH-----------HHHHHHHHHHCCCEEEEEEcChh
Confidence 469999998743 89999999999999999987653
No 300
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=76.91 E-value=1.8 Score=47.69 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
++++|||+|+.. +-|..+++.|.+.|++|++++.++.
T Consensus 6 ~~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAG----------FIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTS----------HHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCCeEEEECCCC----------hHHHHHHHHHHHCCCEEEEEecCCc
Confidence 457999999843 3489999999999999999987654
No 301
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=76.88 E-value=3.7 Score=43.74 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=46.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceee---cCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYF---EPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~---~p~~~e~v~~i~~~~ 717 (1190)
...|++||.|++.. ||+.+ ++.+.+.|.+|++++.+.+...... ..+... +-.+.+++.+++++.
T Consensus 9 f~GK~alVTGas~G-IG~ai---------a~~la~~Ga~Vv~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (242)
T 4b79_A 9 YAGQQVLVTGGSSG-IGAAI---------AMQFAELGAEVVALGLDADGVHAPR--HPRIRREELDITDSQRLQRLFEAL 76 (242)
T ss_dssp TTTCEEEEETTTSH-HHHHH---------HHHHHHTTCEEEEEESSTTSTTSCC--CTTEEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCH-HHHHH---------HHHHHHCCCEEEEEeCCHHHHhhhh--cCCeEEEEecCCCHHHHHHHHHhc
Confidence 46899999999875 66655 9999999999999998876544321 112222 123356666666543
Q ss_pred -CCCccc
Q 001014 718 -RPEGII 723 (1190)
Q Consensus 718 -~~d~Vi 723 (1190)
++|.++
T Consensus 77 g~iDiLV 83 (242)
T 4b79_A 77 PRLDVLV 83 (242)
T ss_dssp SCCSEEE
T ss_pred CCCCEEE
Confidence 345444
No 302
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=76.88 E-value=4 Score=45.00 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=45.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
|+|||+|+.. +-|..+++.|.+.|++|+++..+.. + +-.+.+.+.++++..++|+|+
T Consensus 4 ~~ilVtGatG----------~iG~~l~~~L~~~g~~v~~~~r~~~--------~-----D~~d~~~~~~~~~~~~~d~vi 60 (321)
T 1e6u_A 4 QRVFIAGHRG----------MVGSAIRRQLEQRGDVELVLRTRDE--------L-----NLLDSRAVHDFFASERIDQVY 60 (321)
T ss_dssp EEEEEETTTS----------HHHHHHHHHHTTCTTEEEECCCTTT--------C-----CTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCc----------HHHHHHHHHHHhCCCeEEEEecCcc--------C-----CccCHHHHHHHHHhcCCCEEE
Confidence 5899999753 3389999999999999988764421 1 112557777888777899998
Q ss_pred ecCC
Q 001014 173 PTMG 176 (1190)
Q Consensus 173 p~~~ 176 (1190)
-..+
T Consensus 61 h~a~ 64 (321)
T 1e6u_A 61 LAAA 64 (321)
T ss_dssp ECCC
T ss_pred EcCe
Confidence 6554
No 303
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=76.83 E-value=2.4 Score=44.96 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=60.3
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~Vi 723 (1190)
||.|+|.|. +|+.+ ++.+.+.|++++ +.|.++. . +..+ .+++++ +. .++|.|+
T Consensus 2 ~vgiIG~G~--mG~~~---------~~~l~~~g~~lv~v~d~~~~-~-------~~~~---~~~~~l---~~-~~~DvVv 55 (236)
T 2dc1_A 2 LVGLIGYGA--IGKFL---------AEWLERNGFEIAAILDVRGE-H-------EKMV---RGIDEF---LQ-REMDVAV 55 (236)
T ss_dssp EEEEECCSH--HHHHH---------HHHHHHTTCEEEEEECSSCC-C-------TTEE---SSHHHH---TT-SCCSEEE
T ss_pred EEEEECCCH--HHHHH---------HHHHhcCCCEEEEEEecCcc-h-------hhhc---CCHHHH---hc-CCCCEEE
Confidence 799999987 55544 677777899984 5565531 1 1111 234443 33 5789999
Q ss_pred cccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCC
Q 001014 724 VQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIE 785 (1190)
Q Consensus 724 ~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp 785 (1190)
...........+..+- +.| .+++.-++-+....+-...+.+.+++.|+.
T Consensus 56 ~~~~~~~~~~~~~~~l----------~~G---~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~ 104 (236)
T 2dc1_A 56 EAASQQAVKDYAEKIL----------KAG---IDLIVLSTGAFADRDFLSRVREVCRKTGRR 104 (236)
T ss_dssp ECSCHHHHHHHHHHHH----------HTT---CEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred ECCCHHHHHHHHHHHH----------HCC---CcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence 8777665545554444 667 666655554332222113556667777766
No 304
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=76.81 E-value=5.1 Score=44.61 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=48.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC--c---cCc-ceEEE-CCCCHHHHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD--P---GLA-DRTYI-TPMTPELVEQVLEK 165 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--~---~~a-d~~~i-~p~~~~~v~~i~~~ 165 (1190)
|+|||+|+.. +-|..+++.|.+.|++|++++.+....... . ... -..+. +-.+.+.+.++++.
T Consensus 2 ~~vlVTGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (347)
T 1orr_A 2 AKLLITGGCG----------FLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITK 71 (347)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred cEEEEeCCCc----------hhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhc
Confidence 5899999753 338899999999999999997532110000 0 000 12232 33467788888876
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+|+-..+
T Consensus 72 ~~~d~vih~A~ 82 (347)
T 1orr_A 72 YMPDSCFHLAG 82 (347)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 67999986654
No 305
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=76.80 E-value=2.4 Score=45.46 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-c----Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-G----LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~----~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++....... . -.. ..+ .+-.+.+.+.+++
T Consensus 6 ~~k~vlVTGas~G----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (252)
T 3h7a_A 6 RNATVAVIGAGDY----------IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFL 75 (252)
T ss_dssp CSCEEEEECCSSH----------HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHH
Confidence 4579999998753 278999999999999999987654211000 0 011 122 2333566666655
Q ss_pred HH----cCCCEEEecCC
Q 001014 164 EK----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~----~~~d~Vip~~~ 176 (1190)
+. .++|.++..-+
T Consensus 76 ~~~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 76 NAADAHAPLEVTIFNVG 92 (252)
T ss_dssp HHHHHHSCEEEEEECCC
T ss_pred HHHHhhCCceEEEECCC
Confidence 54 37898886554
No 306
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=76.78 E-value=2.1 Score=46.09 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCcc--eEE-ECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLAD--RTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~ad--~~~-i~p~~~~~v~~i~~~~ 166 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++..... ...... ..+ .+-.+.+.+.+++++.
T Consensus 6 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (260)
T 1nff_A 6 TGKVALVSGGARG----------MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTA 75 (260)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Confidence 4578999998752 2789999999999999999866432100 000111 122 2334566666655532
Q ss_pred -----CCCEEEecCC
Q 001014 167 -----RPDALLPTMG 176 (1190)
Q Consensus 167 -----~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 76 ~~~~g~iD~lv~~Ag 90 (260)
T 1nff_A 76 VTAFGGLHVLVNNAG 90 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 7999987654
No 307
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=76.76 E-value=7.2 Score=45.74 Aligned_cols=86 Identities=9% Similarity=0.032 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
..|||+|.|++.. ...+++.|+++|.+++.+..............+.+.+. |...+.+.+++.++|.
T Consensus 312 ~Gkrv~i~~~~~~-----------~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~~v~~~--D~~~le~~i~~~~pDl 378 (458)
T 3pdi_B 312 SSARTAIAADPDL-----------LLGFDALLRSMGAHTVAAVVPARAAALVDSPLPSVRVG--DLEDLEHAARAGQAQL 378 (458)
T ss_dssp TTCEEEEECCHHH-----------HHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSSCEEES--HHHHHHHHHHHHTCSE
T ss_pred CCCEEEEECCcHH-----------HHHHHHHHHHCCCEEEEEEECCCChhhhhCccCcEEeC--CHHHHHHHHHhcCCCE
Confidence 3579999888754 34688999999999998754322211111112344443 6667888899999999
Q ss_pred EEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 171 LLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 171 Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
++-...+ +.+.+++|++++
T Consensus 379 lig~~~~------------~~~a~k~gip~~ 397 (458)
T 3pdi_B 379 VIGNSHA------------LASARRLGVPLL 397 (458)
T ss_dssp EEECTTH------------HHHHHHTTCCEE
T ss_pred EEEChhH------------HHHHHHcCCCEE
Confidence 9965541 234556788876
No 308
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=76.76 E-value=2.3 Score=47.09 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=45.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCccee-ecCCcHHHHHHHhhhcCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLY-FEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~-~~p~~~e~v~~i~~~~~~ 719 (1190)
.+.++|||+|+... ||+ ++++.|.+.|++|++++.++.. .. ..-..+ .+-.+.+.+.++++..++
T Consensus 10 ~~~~~vlVTGatG~-iG~---------~l~~~L~~~G~~V~~~~r~~~~-~~---l~~~~~~~Dl~d~~~~~~~~~~~~~ 75 (321)
T 2pk3_A 10 HGSMRALITGVAGF-VGK---------YLANHLTEQNVEVFGTSRNNEA-KL---PNVEMISLDIMDSQRVKKVISDIKP 75 (321)
T ss_dssp ---CEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESCTTC-CC---TTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cCcceEEEECCCCh-HHH---------HHHHHHHHCCCEEEEEecCCcc-cc---ceeeEEECCCCCHHHHHHHHHhcCC
Confidence 45689999998775 555 5599999999999999887654 11 100111 122346677777766678
Q ss_pred Cccccc
Q 001014 720 EGIIVQ 725 (1190)
Q Consensus 720 d~Vi~~ 725 (1190)
|.||-.
T Consensus 76 d~vih~ 81 (321)
T 2pk3_A 76 DYIFHL 81 (321)
T ss_dssp SEEEEC
T ss_pred CEEEEc
Confidence 887743
No 309
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=76.76 E-value=1.6 Score=50.90 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
++++|+|||+|+. |..++..|.+.|++|.+++..+
T Consensus 21 m~~~ViIVGaGpa-----------Gl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTA-----------GLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHH-----------HHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHH-----------HHHHHHHHHHCCCeEEEEcCCC
Confidence 4468999999974 8899999999999999998765
No 310
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=76.70 E-value=4.4 Score=43.09 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC-CCCCCC-ccCc-c-eEE-ECCCCHHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP-ATIMTD-PGLA-D-RTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~-~~~~~~-~~~a-d-~~~-i~p~~~~~v~~i~~~ 165 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++ ...... .... . ..+ .+-.+.+.+.+++++
T Consensus 6 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (249)
T 2ew8_A 6 KDKLAVITGGANG----------IGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQ 75 (249)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 4578999998753 27899999999999999998765 211000 0001 1 122 233356666655543
Q ss_pred -----cCCCEEEecCC
Q 001014 166 -----ERPDALLPTMG 176 (1190)
Q Consensus 166 -----~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 76 ~~~~~g~id~lv~nAg 91 (249)
T 2ew8_A 76 VISTFGRCDILVNNAG 91 (249)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 37999987654
No 311
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=76.59 E-value=1.8 Score=46.63 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=46.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
+++|||+|+.. +-|..+++.|.+.|++|++++.++..... . .-..+. +-.+.+.+.++++ ++|.
T Consensus 2 ~~~ilVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~--~~~~~~~Dl~d~~~~~~~~~--~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAG----------GVGSAIRPHLGTLAHEVRLSDIVDLGAAE-A--HEEIVACDLADAQAVHDLVK--DCDG 66 (267)
T ss_dssp EEEEEEESTTS----------HHHHHHGGGGGGTEEEEEECCSSCCCCCC-T--TEEECCCCTTCHHHHHHHHT--TCSE
T ss_pred CceEEEECCCC----------HHHHHHHHHHHhCCCEEEEEeCCCccccC-C--CccEEEccCCCHHHHHHHHc--CCCE
Confidence 36899999853 33889999999999999999876643211 1 112222 2235667777765 6999
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+-..+
T Consensus 67 vi~~a~ 72 (267)
T 3ay3_A 67 IIHLGG 72 (267)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 986554
No 312
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=76.33 E-value=4.2 Score=45.59 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-C---------cc-eEEE-CCCCHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-L---------AD-RTYI-TPMTPELV 159 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~---------ad-~~~i-~p~~~~~v 159 (1190)
+++|||+|+.. +-|..+++.|.+.|++|++++..+........ . .. ..+. +-.+.+.+
T Consensus 25 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (351)
T 3ruf_A 25 PKTWLITGVAG----------FIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC 94 (351)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred CCeEEEECCCc----------HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 46999999753 34899999999999999999875542110000 0 11 2222 33466777
Q ss_pred HHHHHHcCCCEEEecCC
Q 001014 160 EQVLEKERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~ 176 (1190)
.++++ ++|+|+-..+
T Consensus 95 ~~~~~--~~d~Vih~A~ 109 (351)
T 3ruf_A 95 EQVMK--GVDHVLHQAA 109 (351)
T ss_dssp HHHTT--TCSEEEECCC
T ss_pred HHHhc--CCCEEEECCc
Confidence 77776 8999986654
No 313
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=76.33 E-value=1.4 Score=46.55 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~~~d~ 170 (1190)
.++|+|+|.|.. |..+++.|.+.|+ |++++.++....... ..-..+. ++.+.+.+.+ +.-.+.|.
T Consensus 9 ~~~viI~G~G~~-----------G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~-a~i~~ad~ 74 (234)
T 2aef_A 9 SRHVVICGWSES-----------TLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEK-ANVRGARA 74 (234)
T ss_dssp -CEEEEESCCHH-----------HHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHH-TTCTTCSE
T ss_pred CCEEEEECCChH-----------HHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHh-cCcchhcE
Confidence 458999999954 7899999999999 999987765321101 1112333 3445554433 22347899
Q ss_pred EEecCCCh
Q 001014 171 LLPTMGGQ 178 (1190)
Q Consensus 171 Vip~~~g~ 178 (1190)
|+.+.+..
T Consensus 75 vi~~~~~d 82 (234)
T 2aef_A 75 VIVDLESD 82 (234)
T ss_dssp EEECCSCH
T ss_pred EEEcCCCc
Confidence 99877643
No 314
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}
Probab=76.30 E-value=3.7 Score=46.37 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=48.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCc-cccCCcceeecCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVST-DYDTSDRLYFEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~-~~~~ad~~~~~p~~~e~v~~i~~~~~~d 720 (1190)
...+++|.|+|.. +..+++.++.+||+|.++|+.++.... .+.-++.+.. ..+++.++-..-..-+
T Consensus 198 p~~~L~I~GaGhv-----------a~aLa~la~~lgf~V~v~D~R~~~~~~~~fp~a~~v~~--~~p~~~~~~~~~~~~t 264 (362)
T 3on5_A 198 PKERLIIFGAGPD-----------VPPLVTFASNVGFYTVVTDWRPNQCEKHFFPDADEIIV--DFPADFLRKFLIRPDD 264 (362)
T ss_dssp CCEEEEEECCSTT-----------HHHHHHHHHHHTEEEEEEESCGGGGCGGGCTTCSEEEE--SCHHHHHHHSCCCTTC
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCeEEEECCCccccccccCCCceEEec--CCHHHHHhhcCCCCCe
Confidence 5678999999995 666688999999999999998765432 2323443332 1234444332212222
Q ss_pred -ccccccCCchhhhhhh
Q 001014 721 -GIIVQFGGQTPLKLSL 736 (1190)
Q Consensus 721 -~Vi~~~g~~~~~~la~ 736 (1190)
.|+.+++......+..
T Consensus 265 ~vvv~TH~h~~D~~~L~ 281 (362)
T 3on5_A 265 FVLIMTHHFQKDQEILH 281 (362)
T ss_dssp EEEECCSCHHHHHHHHH
T ss_pred EEEEEeCCchhhHHHHH
Confidence 4555566544433333
No 315
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=76.20 E-value=6.1 Score=42.37 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=47.2
Q ss_pred CCCEEEEEcC-C-ccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC------CccCcc-eEE-ECCCCHHHHH
Q 001014 91 DLRKILILGA-G-PIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT------DPGLAD-RTY-ITPMTPELVE 160 (1190)
Q Consensus 91 ~~~kVLIiG~-G-~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~------~~~~ad-~~~-i~p~~~~~v~ 160 (1190)
..|+|||+|+ | .+ |+.+++.|.+.|++|++++.+...... ...-.. ..+ .+-.+.+.+.
T Consensus 21 ~~k~vlITGasg~GI-----------G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~ 89 (266)
T 3o38_A 21 KGKVVLVTAAAGTGI-----------GSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVD 89 (266)
T ss_dssp TTCEEEESSCSSSSH-----------HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCCch-----------HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHH
Confidence 3579999998 5 34 789999999999999999866431100 000011 122 2334666666
Q ss_pred HHHHHc-----CCCEEEecCC
Q 001014 161 QVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 161 ~i~~~~-----~~d~Vip~~~ 176 (1190)
+++++. ++|+++..-+
T Consensus 90 ~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 90 ALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCCcEEEECCC
Confidence 655542 7899986654
No 316
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=76.14 E-value=3.1 Score=44.60 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...|+|||+|++.. ||+.+ ++.|.+.|++|++++.+++.
T Consensus 19 l~~k~vlVTGas~g-IG~ai---------a~~l~~~G~~V~~~~r~~~~ 57 (253)
T 2nm0_A 19 HMSRSVLVTGGNRG-IGLAI---------ARAFADAGDKVAITYRSGEP 57 (253)
T ss_dssp -CCCEEEEETTTSH-HHHHH---------HHHHHHTTCEEEEEESSSCC
T ss_pred CCCCEEEEeCCCCH-HHHHH---------HHHHHHCCCEEEEEeCChHh
Confidence 35689999998874 65544 99999999999999887654
No 317
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=76.05 E-value=5.6 Score=43.63 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=43.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc-------c--cCCcceeecCCcHHHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD-------Y--DTSDRLYFEPLTVEDVLNV 713 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~-------~--~~ad~~~~~p~~~e~v~~i 713 (1190)
+++|+|+|+.+. +|+ ++++.|.+.|++|++++.++...... . .-..-...+-.+.+.+.+.
T Consensus 4 ~~~ilVtGatG~-iG~---------~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~ 73 (313)
T 1qyd_A 4 KSRVLIVGGTGY-IGK---------RIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA 73 (313)
T ss_dssp CCCEEEESTTST-THH---------HHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH
T ss_pred CCEEEEEcCCcH-HHH---------HHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHH
Confidence 568999997553 555 55999999999999998875321000 0 0001011122346667776
Q ss_pred hhhcCCCccccccC
Q 001014 714 IDLERPEGIIVQFG 727 (1190)
Q Consensus 714 ~~~~~~d~Vi~~~g 727 (1190)
++ ++|.|+...+
T Consensus 74 ~~--~~d~vi~~a~ 85 (313)
T 1qyd_A 74 LK--QVDVVISALA 85 (313)
T ss_dssp HT--TCSEEEECCC
T ss_pred Hh--CCCEEEECCc
Confidence 64 5888875544
No 318
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=76.03 E-value=5.5 Score=43.95 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=44.5
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcc-----ccCCcceeecCCcHHHHHHHhhhc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTD-----YDTSDRLYFEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~-----~~~ad~~~~~p~~~e~v~~i~~~~ 717 (1190)
+++|+|+|+.+. +|+ +++++|.+.|++|++++.++...... ..-..-...+-.+.+.+.+.++
T Consensus 11 ~~~ilVtGatG~-iG~---------~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~-- 78 (318)
T 2r6j_A 11 KSKILIFGGTGY-IGN---------HMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK-- 78 (318)
T ss_dssp CCCEEEETTTST-THH---------HHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--
T ss_pred CCeEEEECCCch-HHH---------HHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--
Confidence 468999997553 555 55999999999999998876421100 0001111112234667777664
Q ss_pred CCCccccccC
Q 001014 718 RPEGIIVQFG 727 (1190)
Q Consensus 718 ~~d~Vi~~~g 727 (1190)
++|.|+...+
T Consensus 79 ~~d~vi~~a~ 88 (318)
T 2r6j_A 79 KVDVVISALA 88 (318)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 5888876554
No 319
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=76.03 E-value=6.2 Score=43.31 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=47.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCc-c-eEE-ECCCCHHHHHHHHHHcCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLA-D-RTY-ITPMTPELVEQVLEKERPD 169 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~a-d-~~~-i~p~~~~~v~~i~~~~~~d 169 (1190)
|+|||+|+.. +-|..+++.|.+.|++|++++....... .... . ..+ .+-.+.+.+.+.++..++|
T Consensus 1 m~vlVTGatG----------~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAG----------FIGSHIVEDLLARGLEVAVLDNLATGKR--ENVPKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHTTTCEEEEECCCSSCCG--GGSCTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCc----------HHHHHHHHHHHHCCCEEEEEECCCcCch--hhcccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 3799999853 3388999999999999999975332111 0110 1 122 2233667788878777899
Q ss_pred EEEecCC
Q 001014 170 ALLPTMG 176 (1190)
Q Consensus 170 ~Vip~~~ 176 (1190)
.|+-..+
T Consensus 69 ~vi~~a~ 75 (311)
T 2p5y_A 69 HVSHQAA 75 (311)
T ss_dssp EEEECCS
T ss_pred EEEECcc
Confidence 9986554
No 320
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=76.01 E-value=9.4 Score=43.51 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=50.5
Q ss_pred CCEEEEE--cCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC-cceEEEC-CCC-HHHHHHHHHHc
Q 001014 92 LRKILIL--GAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGL-ADRTYIT-PMT-PELVEQVLEKE 166 (1190)
Q Consensus 92 ~~kVLIi--G~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~i~-p~~-~~~v~~i~~~~ 166 (1190)
..+|||+ |+|++ |..++..++..|.+|+.++.++........+ +|.++-. ..+ .+.+.++....
T Consensus 171 g~~vlV~gag~G~v-----------G~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~ 239 (379)
T 3iup_A 171 GHSALVHTAAASNL-----------GQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVST 239 (379)
T ss_dssp TCSCEEESSTTSHH-----------HHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHH-----------HHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCC
Confidence 4689999 55543 6778888888999999997654321110111 3333321 112 24555555567
Q ss_pred CCCEEEecCCChhHHHHHH
Q 001014 167 RPDALLPTMGGQTALNLAV 185 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~~~~~~ 185 (1190)
++|+++-+.++....+.+.
T Consensus 240 g~d~v~d~~g~~~~~~~~~ 258 (379)
T 3iup_A 240 GATIAFDATGGGKLGGQIL 258 (379)
T ss_dssp CCCEEEESCEEESHHHHHH
T ss_pred CceEEEECCCchhhHHHHH
Confidence 8999998888765544444
No 321
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=75.85 E-value=4.8 Score=42.59 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=46.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccCc-c-eEE-ECCCCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PGLA-D-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~a-d-~~~-i~p~~~~~v~~i~ 163 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .... . ..+ .+-.+.+.+.+++
T Consensus 2 ~k~vlItGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (250)
T 2cfc_A 2 SRVAIVTGASSG----------NGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAI 71 (250)
T ss_dssp CCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 368999998642 27899999999999999998664211000 0001 1 122 2334666666665
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++...+
T Consensus 72 ~~~~~~~~~id~li~~Ag 89 (250)
T 2cfc_A 72 AATMEQFGAIDVLVNNAG 89 (250)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 532 7999987554
No 322
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=75.63 E-value=2.5 Score=44.72 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcc-eEE-ECCCCHHHHHHHHHHc-
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLAD-RTY-ITPMTPELVEQVLEKE- 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad-~~~-i~p~~~~~v~~i~~~~- 166 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... ..... ..+ .+-.+.+.+.+++++.
T Consensus 6 ~~~~vlVTGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 1cyd_A 6 SGLRALVTGAGKG----------IGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIG 75 (244)
T ss_dssp TTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcC
Confidence 3579999998642 38899999999999999998764311000 00001 222 3334667777777643
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+|+...+
T Consensus 76 ~id~vi~~Ag 85 (244)
T 1cyd_A 76 PVDLLVNNAA 85 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 5899986654
No 323
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=75.58 E-value=1.2 Score=43.91 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=57.2
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.++-|||...|++-+..-+.....+.+|.+ +-+...+++++.+.++++.+.+.|++ |++.+|.+.+|-
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~e--v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp 75 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYE--CEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP 75 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEE--EEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEE--EEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH
Confidence 467889999999988877777777888776 66778899999999999999998988 888888887774
No 324
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=75.55 E-value=2.5 Score=45.65 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----cc--Ccc-eEE-ECCCCH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PG--LAD-RTY-ITPMTP 156 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~--~ad-~~~-i~p~~~ 156 (1190)
|......|++||+|++.- -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.
T Consensus 4 m~~~l~~k~~lVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~ 73 (267)
T 3t4x_A 4 MHMQLKGKTALVTGSTAG----------IGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE 73 (267)
T ss_dssp CCCCCTTCEEEETTCSSH----------HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSH
T ss_pred cccccCCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCH
Confidence 333345679999998642 27889999999999999998664311000 00 011 112 233356
Q ss_pred HHHHHHHHHc-CCCEEEecCC
Q 001014 157 ELVEQVLEKE-RPDALLPTMG 176 (1190)
Q Consensus 157 ~~v~~i~~~~-~~d~Vip~~~ 176 (1190)
+.+.+++++. ++|.++..-+
T Consensus 74 ~~~~~~~~~~g~id~lv~nAg 94 (267)
T 3t4x_A 74 QGCQDVIEKYPKVDILINNLG 94 (267)
T ss_dssp HHHHHHHHHCCCCSEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEECCC
Confidence 6777777765 6898886554
No 325
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=75.55 E-value=3.3 Score=44.61 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
..|+|||+|++.. ||+. +++.|.+.|++|++++.+++.
T Consensus 7 ~~k~vlVTGas~g-IG~~---------ia~~l~~~G~~V~~~~r~~~~ 44 (264)
T 2dtx_A 7 RDKVVIVTGASMG-IGRA---------IAERFVDEGSKVIDLSIHDPG 44 (264)
T ss_dssp TTCEEEEESCSSH-HHHH---------HHHHHHHTTCEEEEEESSCCC
T ss_pred CCCEEEEeCCCCH-HHHH---------HHHHHHHCCCEEEEEecCccc
Confidence 4688999998774 6554 499999999999999887654
No 326
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=75.54 E-value=2.7 Score=44.90 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC--------ccCcc-eEE-ECCCCHHHH
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD--------PGLAD-RTY-ITPMTPELV 159 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--------~~~ad-~~~-i~p~~~~~v 159 (1190)
...|++||.|++.- -|+.+++.|.+.|++|++++.++...... ..... ..+ .+-.+.+.+
T Consensus 5 ~~~k~~lVTGas~G----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 74 (250)
T 3nyw_A 5 KQKGLAIITGASQG----------IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKA 74 (250)
T ss_dssp CCCCEEEEESTTSH----------HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHH
Confidence 34579999998743 27889999999999999998764311000 00011 122 333456666
Q ss_pred HHHHHH-----cCCCEEEecCC
Q 001014 160 EQVLEK-----ERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~-----~~~d~Vip~~~ 176 (1190)
.+++++ .++|+++..-+
T Consensus 75 ~~~~~~~~~~~g~iD~lvnnAg 96 (250)
T 3nyw_A 75 DTEIKDIHQKYGAVDILVNAAA 96 (250)
T ss_dssp HHHHHHHHHHHCCEEEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 655543 26898886554
No 327
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=75.47 E-value=1.4 Score=43.67 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=57.6
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.+.|++ |++.+|-+.+|-
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~e--v~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp 82 (174)
T 3kuu_A 14 KIAIVMGSKSDWATMQFAADVLTTLNVPFH--VEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP 82 (174)
T ss_dssp CEEEEESSGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH
T ss_pred cEEEEECcHHHHHHHHHHHHHHHHcCCCEE--EEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH
Confidence 467889999999988887777778888876 67778999999999999999999998 888888887774
No 328
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=75.43 E-value=5.9 Score=44.22 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=48.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC----CCcc--------Ccc-eEEE-CCCCHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM----TDPG--------LAD-RTYI-TPMTPE 157 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~----~~~~--------~ad-~~~i-~p~~~~ 157 (1190)
.|+|||+|+.. +-|..+++.|.+.|++|++++.+....- .... -.. ..+. +-.+.+
T Consensus 2 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~ 71 (348)
T 1ek6_A 2 AEKVLVTGGAG----------YIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQG 71 (348)
T ss_dssp CSEEEEETTTS----------HHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHH
T ss_pred CCEEEEECCCC----------HHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHH
Confidence 36999999753 3388999999999999999975432200 0000 001 2232 334667
Q ss_pred HHHHHHHHcCCCEEEecCC
Q 001014 158 LVEQVLEKERPDALLPTMG 176 (1190)
Q Consensus 158 ~v~~i~~~~~~d~Vip~~~ 176 (1190)
.+.++++..++|+|+-..+
T Consensus 72 ~~~~~~~~~~~d~vih~A~ 90 (348)
T 1ek6_A 72 ALQRLFKKYSFMAVIHFAG 90 (348)
T ss_dssp HHHHHHHHCCEEEEEECCS
T ss_pred HHHHHHHhcCCCEEEECCC
Confidence 7888777668999986554
No 329
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=75.40 E-value=3.2 Score=44.12 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=47.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC-CCCCCCC-cc----Ccc-eEE-ECCCCHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN-PATIMTD-PG----LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~-~~~~~~~-~~----~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
.++|||+|++.. -|+.+++.|.+.|++|++++.+ +...... .. -.+ ..+ .+-.+.+.+.+++
T Consensus 7 ~k~vlVTGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (258)
T 3afn_B 7 GKRVLITGSSQG----------IGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLV 76 (258)
T ss_dssp TCEEEETTCSSH----------HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 468999998642 3889999999999999999876 3321000 00 011 122 2334566666666
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+|+...+
T Consensus 77 ~~~~~~~g~id~vi~~Ag 94 (258)
T 3afn_B 77 DEFVAKFGGIDVLINNAG 94 (258)
T ss_dssp HHHHHHHSSCSEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 532 7999987654
No 330
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=75.18 E-value=2.8 Score=44.32 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc-----Ccc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG-----LAD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~-----~ad-~~~-i~p~~~~~v~~i 162 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.++
T Consensus 6 ~~~~vlVtGasgg----------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 75 (248)
T 2pnf_A 6 QGKVSLVTGSTRG----------IGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKA 75 (248)
T ss_dssp TTCEEEETTCSSH----------HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHH
Confidence 4578999998742 38899999999999999998764311000 00 011 112 233466666666
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|+|+...+
T Consensus 76 ~~~~~~~~~~~d~vi~~Ag 94 (248)
T 2pnf_A 76 FEEIYNLVDGIDILVNNAG 94 (248)
T ss_dssp HHHHHHHSSCCSEEEECCC
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 6542 7999987654
No 331
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=75.11 E-value=3.1 Score=43.46 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=45.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc-CCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE-RPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~-~~d~ 170 (1190)
.|++||.|++.- -|+.+++.|.+.|++|++++.+.. .+-.+.+.+.+++++. ++|.
T Consensus 6 ~k~vlVTGas~g----------IG~~~a~~l~~~G~~V~~~~r~~~-------------~D~~~~~~v~~~~~~~g~id~ 62 (223)
T 3uce_A 6 KTVYVVLGGTSG----------IGAELAKQLESEHTIVHVASRQTG-------------LDISDEKSVYHYFETIGAFDH 62 (223)
T ss_dssp CEEEEEETTTSH----------HHHHHHHHHCSTTEEEEEESGGGT-------------CCTTCHHHHHHHHHHHCSEEE
T ss_pred CCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEecCCcc-------------cCCCCHHHHHHHHHHhCCCCE
Confidence 468999998752 278999999999999999976654 1223566777777664 6899
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
++..-+
T Consensus 63 lv~nAg 68 (223)
T 3uce_A 63 LIVTAG 68 (223)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 886554
No 332
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=74.91 E-value=3 Score=46.94 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc---CCcce--e-ecCCcHHHHHHHhh
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD---TSDRL--Y-FEPLTVEDVLNVID 715 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~---~ad~~--~-~~p~~~e~v~~i~~ 715 (1190)
..++|||+|+... ||+ ++++.|.+.|++|++++.++........ ..+.+ + .+-.+.+.+.++++
T Consensus 8 ~~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 77 (357)
T 1rkx_A 8 QGKRVFVTGHTGF-KGG---------WLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIR 77 (357)
T ss_dssp TTCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHH---------HHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHH
Confidence 4578999998664 555 5599999999999999887644221000 01111 1 12233556666666
Q ss_pred hcCCCcccc
Q 001014 716 LERPEGIIV 724 (1190)
Q Consensus 716 ~~~~d~Vi~ 724 (1190)
..++|.||-
T Consensus 78 ~~~~d~vih 86 (357)
T 1rkx_A 78 EFQPEIVFH 86 (357)
T ss_dssp HHCCSEEEE
T ss_pred hcCCCEEEE
Confidence 556777764
No 333
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=74.87 E-value=1.3 Score=49.87 Aligned_cols=79 Identities=10% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEEecCCCCCcCccccC-Ccceee-cCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIMMNSNPETVSTDYDT-SDRLYF-EPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~v~~~p~~~s~~~~~-ad~~~~-~p~~~e~v~~i~~~~ 717 (1190)
...++|+|+|+|+ +|+ .+++.++.+ |.+|++++.+++....-..+ +|..+. .....+.+.++....
T Consensus 170 ~~g~~vlv~GaG~--vG~---------~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~ 238 (345)
T 3jv7_A 170 GPGSTAVVIGVGG--LGH---------VGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQ 238 (345)
T ss_dssp CTTCEEEEECCSH--HHH---------HHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGG
T ss_pred CCCCEEEEECCCH--HHH---------HHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCC
Confidence 3567999999987 444 447777777 78999998876543211111 232221 112255666666666
Q ss_pred CCCccccccCCch
Q 001014 718 RPEGIIVQFGGQT 730 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~ 730 (1190)
++|.|+-..|+..
T Consensus 239 g~d~v~d~~G~~~ 251 (345)
T 3jv7_A 239 GATAVFDFVGAQS 251 (345)
T ss_dssp CEEEEEESSCCHH
T ss_pred CCeEEEECCCCHH
Confidence 8999988888763
No 334
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=74.80 E-value=19 Score=38.42 Aligned_cols=114 Identities=21% Similarity=0.257 Sum_probs=63.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC-eEEEEccCCCCCCCCccCcceE-----EECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVILINSNPATIMTDPGLADRT-----YITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~-----~i~p~~~~~v~~i~~~ 165 (1190)
..+|+|+|.|.+ |..+++.|.+.|+ ++.++|.+.-... .+.... .+.....+.+.+.+++
T Consensus 28 ~~~VlvvG~Ggl-----------G~~va~~La~~Gvg~i~lvD~d~v~~s---NL~Rq~l~~~~diG~~Ka~~~~~~l~~ 93 (251)
T 1zud_1 28 DSQVLIIGLGGL-----------GTPAALYLAGAGVGTLVLADDDDVHLS---NLQRQILFTTEDIDRPKSQVSQQRLTQ 93 (251)
T ss_dssp TCEEEEECCSTT-----------HHHHHHHHHHTTCSEEEEECCCBCCGG---GTTTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred cCcEEEEccCHH-----------HHHHHHHHHHcCCCeEEEEeCCCcccc---cCCCCccCChhhCCCHHHHHHHHHHHH
Confidence 359999999976 7789999999998 5667766542211 111111 0122234556666666
Q ss_pred cCCCEEEecCCChh-HHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCCCC
Q 001014 166 ERPDALLPTMGGQT-ALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKTPP 230 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~-~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 230 (1190)
.+++.-+....... ..+. ..++..+.+-+...+... .|....+.+.+.|+|...
T Consensus 94 ~np~~~v~~~~~~~~~~~~------~~~~~~~DvVi~~~d~~~-----~r~~l~~~~~~~~~p~i~ 148 (251)
T 1zud_1 94 LNPDIQLTALQQRLTGEAL------KDAVARADVVLDCTDNMA-----TRQEINAACVALNTPLIT 148 (251)
T ss_dssp HCTTSEEEEECSCCCHHHH------HHHHHHCSEEEECCSSHH-----HHHHHHHHHHHTTCCEEE
T ss_pred HCCCCEEEEEeccCCHHHH------HHHHhcCCEEEECCCCHH-----HHHHHHHHHHHhCCCEEE
Confidence 66764443332211 1111 234555666665444222 355666777888877543
No 335
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=74.76 E-value=2.7 Score=47.77 Aligned_cols=44 Identities=20% Similarity=0.098 Sum_probs=28.4
Q ss_pred cCCCCCCCC-cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 635 ECESAPTQK-KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 635 ~~~~~~~~~-~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
||+...... ++|||+|+... ||+ ++++.|.+.|++|++++.++.
T Consensus 15 ~~~~~~~~M~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~ 59 (375)
T 1t2a_A 15 ENKYFQGHMRNVALITGITGQ-DGS---------YLAEFLLEKGYEVHGIVRRSS 59 (375)
T ss_dssp ---------CCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECCCS
T ss_pred cchhhHhhcCcEEEEECCCch-HHH---------HHHHHHHHCCCEEEEEECCcc
Confidence 444433333 78999998664 555 559999999999999987754
No 336
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Probab=74.69 E-value=5.2 Score=44.98 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=48.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCC-----CeEEEEccCCCCCCCCccCcceEEE-CCCCHHHHHHHHHHc
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEG-----YEVILINSNPATIMTDPGLADRTYI-TPMTPELVEQVLEKE 166 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G-----~~vi~v~~~~~~~~~~~~~ad~~~i-~p~~~~~v~~i~~~~ 166 (1190)
|+|||+|+.. +-|..+++.|.+.| ++|++++.++........-. ..+. +-.+.+.+.++++..
T Consensus 2 ~~vlVtGatG----------~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 2 SVALIVGVTG----------IIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPI-NYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp EEEEEETTTS----------HHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCC-EEEECCTTSHHHHHHHHTTC
T ss_pred CEEEEECCCc----------HHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCce-EEEEeecCCHHHHHHHHhcC
Confidence 5899999753 34899999999999 99999987654322100011 2233 334667777777654
Q ss_pred C-CCEEEecCC
Q 001014 167 R-PDALLPTMG 176 (1190)
Q Consensus 167 ~-~d~Vip~~~ 176 (1190)
+ +|.|+-..+
T Consensus 71 ~~~d~vih~a~ 81 (364)
T 2v6g_A 71 TDVTHVFYVTW 81 (364)
T ss_dssp TTCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 4 999986543
No 337
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=74.62 E-value=4.3 Score=43.50 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-----CccCc-c-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-----DPGLA-D-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-----~~~~a-d-~~~-i~p~~~~~v~~i 162 (1190)
++|+|||+|++.- -|+.+++.|.+.|++|++++.+...... ..... . ..+ .+-.+.+.+.++
T Consensus 6 ~~k~vlVTGas~g----------IG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 75 (264)
T 3i4f_A 6 FVRHALITAGTKG----------LGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKI 75 (264)
T ss_dssp CCCEEEETTTTSH----------HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHH
T ss_pred ccCEEEEeCCCch----------hHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 4578999998752 2789999999999999998654321000 00001 1 122 333466666666
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|+++...+
T Consensus 76 ~~~~~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 76 VEEAMSHFGKIDFLINNAG 94 (264)
T ss_dssp HHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHhCCCCEEEECCc
Confidence 6543 7999986655
No 338
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=74.62 E-value=5 Score=46.03 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHHHHHc----CCCcceeEEEEE----e-cCCCEEEEE-EccCCCCChhhhhccc-CCCHHHHHHHH
Q 001014 899 ISSSCLDTISSWTIKLAKRL----NVCGLMNCQYAI----T-TSGDVYLLE-ANPRASRTVPFVSKAI-GHPLAKYAALV 967 (1190)
Q Consensus 899 l~~~~~~~i~~~a~~i~~~L----g~~G~~~ief~~----d-~~g~~~viE-iNpR~~~s~~~~~~~~-G~~l~~~~~~~ 967 (1190)
++++..+++++.+.++.+.+ .-+|+.-+||.+ + .+|++++++ +.| .+.-|....+ +-++-+..+|-
T Consensus 157 i~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~~~~~G~ivLaDeitP---Ds~R~W~~~~~~~~~DK~~~R~ 233 (425)
T 2h31_A 157 IGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVIDN---DSWRLWPSGDRSQQKDKQSYRD 233 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEECEEEETTTCCEEECSCCCT---TSEEEECCC-------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEecCCCeEEEEEeeCC---CccccccCCCCCCcccHHHHHh
Confidence 57888999999999988765 235887777765 4 378888876 333 2222211111 22233333333
Q ss_pred HcCCCCCCCCCCccccCCeeEEeeccCCCcccCCCceeeCCcccccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeee
Q 001014 968 MSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLS 1047 (1190)
Q Consensus 968 ~lG~~l~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~lg~~~rs~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~ 1047 (1190)
.+...-.+++ .....|..+-..+--... + +....+|-|||...|++-+..-+..+..+.+|.+ +-+.
T Consensus 234 ~~~~~~~~l~---~v~~~Y~eVa~rL~i~~~-~-------~~~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~--v~V~ 300 (425)
T 2h31_A 234 LKEVTPEGLQ---MVKKNFEWVAERVELLLK-S-------ESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCE--LRVT 300 (425)
T ss_dssp -----CCSSS---CCCCCHHHHHTTGGGGGS-C-------SCCCEEEEEESCGGGHHHHHHHHHHHHHTTCCEE--EEEC
T ss_pred ccccchhhHH---HHHHHHHHHHHHhhcccC-c-------cCCCeEEEEecCcccHHHHHHHHHHHHHcCCceE--Eeee
Confidence 2111101111 011111111111100000 0 0112367788999999988888877778888865 6677
Q ss_pred cCCCChhHHHHHHHHHHHCCCe--eeeccccHHHHH
Q 001014 1048 LNDLTKPHLERIAKAFLDIGFK--IVSTSGTAHFLE 1081 (1190)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~g~~--i~a~~gt~~~l~ 1081 (1190)
..+++++.+.++++.+.+.|.+ |+|.+|.+.+|-
T Consensus 301 saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp 336 (425)
T 2h31_A 301 SAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG 336 (425)
T ss_dssp CTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH
T ss_pred eccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH
Confidence 8999999999999999999994 999999888874
No 339
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=74.57 E-value=2.9 Score=44.21 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC-cceEE-ECCCCHHHHHHHHHHc-
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL-ADRTY-ITPMTPELVEQVLEKE- 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~-ad~~~-i~p~~~~~v~~i~~~~- 166 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... ... ....+ .+-.+.+.+.+++++.
T Consensus 6 ~~k~vlITGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 3d3w_A 6 AGRRVLVTGAGKG----------IGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp TTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCcEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcC
Confidence 4579999998642 28899999999999999998664311000 000 11222 2334667777777643
Q ss_pred CCCEEEecCC
Q 001014 167 RPDALLPTMG 176 (1190)
Q Consensus 167 ~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 76 ~id~vi~~Ag 85 (244)
T 3d3w_A 76 PVDLLVNNAA 85 (244)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 5899986654
No 340
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=74.53 E-value=3 Score=46.54 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=43.3
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccc--cC--Ccceee---cCCcHHHHHHHhh
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDY--DT--SDRLYF---EPLTVEDVLNVID 715 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~--~~--ad~~~~---~p~~~e~v~~i~~ 715 (1190)
.++|||+|+... ||+ ++++.|.+.|++|++++.++....... .. .....+ +-.+.+.+.++++
T Consensus 3 ~~~vlVtGatG~-iG~---------~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 72 (345)
T 2z1m_A 3 GKRALITGIRGQ-DGA---------YLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIE 72 (345)
T ss_dssp CCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCh-HHH---------HHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHH
Confidence 478999998664 555 559999999999999987764321100 00 001111 1223556666666
Q ss_pred hcCCCcccc
Q 001014 716 LERPEGIIV 724 (1190)
Q Consensus 716 ~~~~d~Vi~ 724 (1190)
..++|.||-
T Consensus 73 ~~~~d~vih 81 (345)
T 2z1m_A 73 KVQPDEVYN 81 (345)
T ss_dssp HHCCSEEEE
T ss_pred hcCCCEEEE
Confidence 556777663
No 341
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=74.50 E-value=4.7 Score=44.21 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC---------C-ccCcc-eEE-ECCCCHH
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT---------D-PGLAD-RTY-ITPMTPE 157 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~---------~-~~~ad-~~~-i~p~~~~ 157 (1190)
...++|||+|++.. -|+.+++.|.+.|++|++++.++..... . ..-.. ..+ .+-.+.+
T Consensus 16 l~~k~vlVTGasgg----------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T 1yxm_A 16 LQGQVAIVTGGATG----------IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE 85 (303)
T ss_dssp TTTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHH
Confidence 34579999998742 3789999999999999999865421100 0 00011 122 2334566
Q ss_pred HHHHHHHH-----cCCCEEEecCC
Q 001014 158 LVEQVLEK-----ERPDALLPTMG 176 (1190)
Q Consensus 158 ~v~~i~~~-----~~~d~Vip~~~ 176 (1190)
.+.++++. .++|+|+...+
T Consensus 86 ~v~~~~~~~~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 86 EVNNLVKSTLDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 66666654 26999987655
No 342
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=74.37 E-value=3.7 Score=44.11 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-c---c-Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-P---G-LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~---~-~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++...... . . -.. ..+ .+-.+.+.+.+++
T Consensus 6 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (262)
T 1zem_A 6 NGKVCLVTGAGGN----------IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTV 75 (262)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 4579999998752 27899999999999999998664211000 0 0 011 122 2333566665555
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++...+
T Consensus 76 ~~~~~~~g~id~lv~nAg 93 (262)
T 1zem_A 76 DSVVRDFGKIDFLFNNAG 93 (262)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 432 7899986554
No 343
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=74.35 E-value=2.5 Score=43.19 Aligned_cols=62 Identities=16% Similarity=0.349 Sum_probs=40.3
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhc-CCCccc
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE-RPEGII 723 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~-~~d~Vi 723 (1190)
||||+|++.. ||+. +++.|. .|++|++++.++.... .+-.+.+.+.++++.. ++|.||
T Consensus 5 ~vlVtGasg~-iG~~---------~~~~l~-~g~~V~~~~r~~~~~~----------~D~~~~~~~~~~~~~~~~~d~vi 63 (202)
T 3d7l_A 5 KILLIGASGT-LGSA---------VKERLE-KKAEVITAGRHSGDVT----------VDITNIDSIKKMYEQVGKVDAIV 63 (202)
T ss_dssp EEEEETTTSH-HHHH---------HHHHHT-TTSEEEEEESSSSSEE----------CCTTCHHHHHHHHHHHCCEEEEE
T ss_pred EEEEEcCCcH-HHHH---------HHHHHH-CCCeEEEEecCcccee----------eecCCHHHHHHHHHHhCCCCEEE
Confidence 7999998774 6554 488888 8999999988765211 1123355555555443 577777
Q ss_pred cccC
Q 001014 724 VQFG 727 (1190)
Q Consensus 724 ~~~g 727 (1190)
-.-+
T Consensus 64 ~~ag 67 (202)
T 3d7l_A 64 SATG 67 (202)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 5433
No 344
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=74.34 E-value=3.1 Score=43.29 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHH--HHHCCCeEEE-EccCCC-CCCC-CccCcceEEECCCCHHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKA--LKEEGYEVIL-INSNPA-TIMT-DPGLADRTYITPMTPELVEQVLEK 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~a--l~~~G~~vi~-v~~~~~-~~~~-~~~~ad~~~i~p~~~~~v~~i~~~ 165 (1190)
..++|+|+|+|.. |.++++. .++.|++++. +|.+|. .... ...- -.++ ..+.+.+++++
T Consensus 83 ~~~~V~IvGaG~l-----------G~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~G-vpV~----~~~dL~~~v~~ 146 (212)
T 3keo_A 83 STTNVMLVGCGNI-----------GRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDG-IPVY----GISTINDHLID 146 (212)
T ss_dssp SCEEEEEECCSHH-----------HHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTC-CBEE----EGGGHHHHC-C
T ss_pred CCCEEEEECcCHH-----------HHHHHHhhhcccCCeEEEEEEeCCchhccCceeECC-eEEe----CHHHHHHHHHH
Confidence 3468999999954 6777777 3457888874 577776 5442 1110 1122 23678889999
Q ss_pred cCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEe
Q 001014 166 ERPDALLPTMGGQTALNLAVALAESGALEKYGVELI 201 (1190)
Q Consensus 166 ~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~ 201 (1190)
+++|.++.+......... .+.|.+.|++-+
T Consensus 147 ~~Id~vIIAvPs~~aq~v------~d~lv~~GIk~I 176 (212)
T 3keo_A 147 SDIETAILTVPSTEAQEV------ADILVKAGIKGI 176 (212)
T ss_dssp CSCCEEEECSCGGGHHHH------HHHHHHHTCCEE
T ss_pred cCCCEEEEecCchhHHHH------HHHHHHcCCCEE
Confidence 999999987753332222 224555666643
No 345
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=74.09 E-value=9.2 Score=43.56 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred CcEEEEE--CCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCcceee--cCCcHHHHHHHhhhc
Q 001014 643 KKKVLIL--GGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSDRLYF--EPLTVEDVLNVIDLE 717 (1190)
Q Consensus 643 ~~kVlIl--G~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad~~~~--~p~~~e~v~~i~~~~ 717 (1190)
..+|||+ |+|+ +|+ .+++.++.+|.+|++++.+++....-.. -+|..+. .+...+.+.++....
T Consensus 171 g~~vlV~gag~G~--vG~---------~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~ 239 (379)
T 3iup_A 171 GHSALVHTAAASN--LGQ---------MLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVST 239 (379)
T ss_dssp TCSCEEESSTTSH--HHH---------HHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCH--HHH---------HHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCC
Confidence 4579999 5565 444 4577788889999999876543221111 1232221 112246666777667
Q ss_pred CCCccccccCCch
Q 001014 718 RPEGIIVQFGGQT 730 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~ 730 (1190)
.+|.|+-..|+..
T Consensus 240 g~d~v~d~~g~~~ 252 (379)
T 3iup_A 240 GATIAFDATGGGK 252 (379)
T ss_dssp CCCEEEESCEEES
T ss_pred CceEEEECCCchh
Confidence 8999988777653
No 346
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=74.04 E-value=1.7 Score=46.25 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=42.9
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhc--CCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE--RPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~--~~d~ 721 (1190)
|+|||+|++.. ||+ ++++.|.+.|++|++++.+++..... +..+-.+.+.+.+++++. ++|.
T Consensus 2 k~vlVtGasg~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 2 SVIAITGSASG-IGA---------ALKELLARAGHTVIGIDRGQADIEAD------LSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp CEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESSSSSEECC------TTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcH-HHH---------HHHHHHHhCCCEEEEEeCChhHcccc------ccCCcccHHHHHHHHHHcCCCccE
Confidence 68999998764 555 55999999999999998876543211 111112245555555544 7888
Q ss_pred ccccc
Q 001014 722 IIVQF 726 (1190)
Q Consensus 722 Vi~~~ 726 (1190)
||-.-
T Consensus 66 vi~~A 70 (255)
T 2dkn_A 66 LVCCA 70 (255)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77543
No 347
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=73.90 E-value=6.2 Score=44.52 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=46.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC--CCccC--------cceEE-E-CCCCHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM--TDPGL--------ADRTY-I-TPMTPELVE 160 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~--~~~~~--------ad~~~-i-~p~~~~~v~ 160 (1190)
|+|||+|+.. +-|..+++.|.+.|++|++++.++.... ..... ....+ . +-.+.+.+.
T Consensus 2 ~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (372)
T 1db3_A 2 KVALITGVTG----------QDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (372)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHH
T ss_pred CEEEEECCCC----------hHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHH
Confidence 6899999753 3388999999999999999986643210 00010 11112 1 223667788
Q ss_pred HHHHHcCCCEEEecCC
Q 001014 161 QVLEKERPDALLPTMG 176 (1190)
Q Consensus 161 ~i~~~~~~d~Vip~~~ 176 (1190)
++++..++|.|+-..+
T Consensus 72 ~~~~~~~~d~vih~A~ 87 (372)
T 1db3_A 72 RILREVQPDEVYNLGA 87 (372)
T ss_dssp HHHHHHCCSEEEECCC
T ss_pred HHHHhcCCCEEEECCc
Confidence 8887778999986544
No 348
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=73.90 E-value=10 Score=41.63 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPAT 138 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~ 138 (1190)
.+||.|||.|.. |..+++.|.+.|++|+++|.++..
T Consensus 15 ~~~I~vIG~G~m-----------G~~~A~~l~~~G~~V~~~dr~~~~ 50 (296)
T 3qha_A 15 QLKLGYIGLGNM-----------GAPMATRMTEWPGGVTVYDIRIEA 50 (296)
T ss_dssp CCCEEEECCSTT-----------HHHHHHHHTTSTTCEEEECSSTTT
T ss_pred CCeEEEECcCHH-----------HHHHHHHHHHCCCeEEEEeCCHHH
Confidence 358999999965 788999999999999999887764
No 349
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=73.83 E-value=4.9 Score=45.06 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=47.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc----------Ccc-eEEE-CCCCHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG----------LAD-RTYI-TPMTPELV 159 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~----------~ad-~~~i-~p~~~~~v 159 (1190)
+++|||+|+.. +-|..+++.|.+.|++|++++.++........ ... ..+. +-.+.+.+
T Consensus 27 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 96 (352)
T 1sb8_A 27 PKVWLITGVAG----------FIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 96 (352)
T ss_dssp CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CCeEEEECCCc----------HHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHH
Confidence 46899999843 33889999999999999999865432100000 011 1222 33356677
Q ss_pred HHHHHHcCCCEEEecCC
Q 001014 160 EQVLEKERPDALLPTMG 176 (1190)
Q Consensus 160 ~~i~~~~~~d~Vip~~~ 176 (1190)
.++++ ++|+|+-..+
T Consensus 97 ~~~~~--~~d~vih~A~ 111 (352)
T 1sb8_A 97 NNACA--GVDYVLHQAA 111 (352)
T ss_dssp HHHHT--TCSEEEECCS
T ss_pred HHHhc--CCCEEEECCc
Confidence 77766 8999986654
No 350
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=73.77 E-value=2.8 Score=46.59 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=42.2
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcce--e-ecCCcHHHHHHHhhhcCCC
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRL--Y-FEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~--~-~~p~~~e~v~~i~~~~~~d 720 (1190)
++|||+|+... ||+ ++++.|.+.|++|++++.++...... +.+.. + .+-.+.+.+.++++..++|
T Consensus 2 ~~ilVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~d 69 (330)
T 2c20_A 2 NSILICGGAGY-IGS---------HAVKKLVDEGLSVVVVDNLQTGHEDA--ITEGAKFYNGDLRDKAFLRDVFTQENIE 69 (330)
T ss_dssp CEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECCSSCCGGG--SCTTSEEEECCTTCHHHHHHHHHHSCEE
T ss_pred CEEEEECCCcH-HHH---------HHHHHHHhCCCEEEEEeCCCcCchhh--cCCCcEEEECCCCCHHHHHHHHhhcCCC
Confidence 68999998664 554 55999999999999998654322111 11111 1 1223456666666555677
Q ss_pred cccc
Q 001014 721 GIIV 724 (1190)
Q Consensus 721 ~Vi~ 724 (1190)
.||-
T Consensus 70 ~vih 73 (330)
T 2c20_A 70 AVMH 73 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 351
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=73.68 E-value=15 Score=40.14 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=32.2
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|......|++||+|++.- | |+.+++.|.+.|++|++++.++
T Consensus 22 m~~~l~gk~~lVTGas~G-I---------G~aia~~la~~G~~V~~~~~~~ 62 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARG-Q---------GRSHAITLAREGADIIAIDVCK 62 (299)
T ss_dssp CCCTTTTCEEEEESTTSH-H---------HHHHHHHHHHTTCEEEEEECCS
T ss_pred cccccCCCEEEEECCCCH-H---------HHHHHHHHHHCCCEEEEEeccc
Confidence 333445679999998753 2 7889999999999999998764
No 352
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=73.58 E-value=7 Score=42.70 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=43.8
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc---Cc-----c--ccCCcceeecCCcHHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV---ST-----D--YDTSDRLYFEPLTVEDVLN 712 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~---s~-----~--~~~ad~~~~~p~~~e~v~~ 712 (1190)
+++|+|+|+.+. +|+ +++++|.+.|++|+++..++... .. . ..-..-...+-.+.+.+.+
T Consensus 4 ~~~ilVtGatG~-iG~---------~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~ 73 (308)
T 1qyc_A 4 RSRILLIGATGY-IGR---------HVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE 73 (308)
T ss_dssp CCCEEEESTTST-THH---------HHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH
T ss_pred CCEEEEEcCCcH-HHH---------HHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHH
Confidence 578999998553 555 55999999999999998775422 00 0 0000111112234566666
Q ss_pred HhhhcCCCccccccC
Q 001014 713 VIDLERPEGIIVQFG 727 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g 727 (1190)
.++ ++|.||...+
T Consensus 74 ~~~--~~d~vi~~a~ 86 (308)
T 1qyc_A 74 AVK--NVDVVISTVG 86 (308)
T ss_dssp HHH--TCSEEEECCC
T ss_pred HHc--CCCEEEECCc
Confidence 664 5888876554
No 353
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=73.57 E-value=1.6 Score=42.94 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=56.7
Q ss_pred cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1013 TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1013 ~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.+.|++ |++.+|.+.+|-
T Consensus 6 V~Iimgs~SD~~v~~~a~~~l~~~gi~~e--v~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp 73 (163)
T 3ors_A 6 VAVIMGSSSDWKIMQESCNMLDYFEIPYE--KQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP 73 (163)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH
T ss_pred EEEEECcHHHHHHHHHHHHHHHHcCCCEE--EEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH
Confidence 57788999999988877777777888866 66778999999999999999999988 888888887774
No 354
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=73.46 E-value=2.3 Score=44.74 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.9
Q ss_pred EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 645 KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 645 kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.|+|+|+|+ ++..++..|++.|++|.+++..+.
T Consensus 4 dV~IIGaGp-----------aGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGI-----------AGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSH-----------HHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCH-----------HHHHHHHHHHHCCCCEEEEECCCC
Confidence 499999999 488889999999999999997653
No 355
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=73.30 E-value=6.6 Score=42.32 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHH-----
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEK----- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~----- 165 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.+....... .....+-.+.+.+.++++.
T Consensus 27 ~gk~vlVTGas~g----------IG~aia~~la~~G~~V~~~~r~~~~~~~~----~~~~~Dv~~~~~~~~~~~~~~~~~ 92 (266)
T 3uxy_A 27 EGKVALVTGAAGG----------IGGAVVTALRAAGARVAVADRAVAGIAAD----LHLPGDLREAAYADGLPGAVAAGL 92 (266)
T ss_dssp TTCEEEESSTTSH----------HHHHHHHHHHHTTCEEEECSSCCTTSCCS----EECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHhh----hccCcCCCCHHHHHHHHHHHHHhc
Confidence 3578999998742 27899999999999999998765543211 1111222345555554443
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 93 g~iD~lvnnAg 103 (266)
T 3uxy_A 93 GRLDIVVNNAG 103 (266)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 27999986654
No 356
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=73.26 E-value=5.7 Score=43.08 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=46.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
.++|||+|+.. +-|..+++.|.+.|++|++++.+.. +-.+.+.+.++++..++|+|
T Consensus 12 ~~~vlVtGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~--------------Dl~d~~~~~~~~~~~~~d~v 67 (292)
T 1vl0_A 12 HMKILITGANG----------QLGREIQKQLKGKNVEVIPTDVQDL--------------DITNVLAVNKFFNEKKPNVV 67 (292)
T ss_dssp CEEEEEESTTS----------HHHHHHHHHHTTSSEEEEEECTTTC--------------CTTCHHHHHHHHHHHCCSEE
T ss_pred cceEEEECCCC----------hHHHHHHHHHHhCCCeEEeccCccC--------------CCCCHHHHHHHHHhcCCCEE
Confidence 46999999864 3489999999999999999975421 11255677777776689999
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+-..+
T Consensus 68 ih~A~ 72 (292)
T 1vl0_A 68 INCAA 72 (292)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 96654
No 357
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=73.16 E-value=2.8 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=29.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
|||||+|+.. |-|..+++.|.+.|++|+++..++.
T Consensus 1 MkILVTGatG----------fIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTG----------FIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCC----------HHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4899999843 4489999999999999999976553
No 358
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=73.15 E-value=2.9 Score=44.06 Aligned_cols=36 Identities=22% Similarity=0.667 Sum_probs=29.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.|+|||+|++.. ||+. +++.|.+.|++|++++.++.
T Consensus 2 ~k~vlVtGasgg-iG~~---------la~~l~~~G~~V~~~~r~~~ 37 (242)
T 1uay_A 2 ERSALVTGGASG-LGRA---------AALALKARGYRVVVLDLRRE 37 (242)
T ss_dssp CCEEEEETTTSH-HHHH---------HHHHHHHHTCEEEEEESSCC
T ss_pred CCEEEEeCCCCh-HHHH---------HHHHHHHCCCEEEEEccCcc
Confidence 478999998764 6554 48899999999999988765
No 359
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=73.13 E-value=1.2 Score=50.51 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=79.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEE-EecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETI-MMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi-~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
++-||+|||.|. +|+ ...+.++++. |++++ +.+.+++.... .+++ |-.+. ..++.++++..++
T Consensus 26 ~~~rigiIG~G~--~g~--------~~~~~~l~~~~~~~l~av~d~~~~~~~~---~a~~-~g~~~-~~~~~~ll~~~~~ 90 (350)
T 3rc1_A 26 NPIRVGVIGCAD--IAW--------RRALPALEAEPLTEVTAIASRRWDRAKR---FTER-FGGEP-VEGYPALLERDDV 90 (350)
T ss_dssp CCEEEEEESCCH--HHH--------HTHHHHHHHCTTEEEEEEEESSHHHHHH---HHHH-HCSEE-EESHHHHHTCTTC
T ss_pred CceEEEEEcCcH--HHH--------HHHHHHHHhCCCeEEEEEEcCCHHHHHH---HHHH-cCCCC-cCCHHHHhcCCCC
Confidence 345899999987 333 1346777776 78877 44555432211 1111 11111 1344555666789
Q ss_pred CccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCCC---ceeecCHH
Q 001014 720 EGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQPK---GGIAKSEA 796 (1190)
Q Consensus 720 d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p~---~~~~~s~~ 796 (1190)
|+|++.........++..+- +.| .+++.-.|-+.. ..+=..+.+++++.|+..-. ++......
T Consensus 91 D~V~i~tp~~~h~~~~~~al----------~aG---k~Vl~EKP~a~~-~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~ 156 (350)
T 3rc1_A 91 DAVYVPLPAVLHAEWIDRAL----------RAG---KHVLAEKPLTTD-RPQAERLFAVARERGLLLMENFMFLHHPQHR 156 (350)
T ss_dssp SEEEECCCGGGHHHHHHHHH----------HTT---CEEEEESSSCSS-HHHHHHHHHHHHHTTCCEEEECGGGGCTHHH
T ss_pred CEEEECCCcHHHHHHHHHHH----------HCC---CcEEEeCCCCCC-HHHHHHHHHHHHHhCCEEEEEecccCCHHHH
Confidence 99998887776666666665 677 666542222211 11223344567777776522 12233455
Q ss_pred HHHHHHH--HhCCcEEEecCc
Q 001014 797 DALAIAK--EIGYPVVVRPSY 815 (1190)
Q Consensus 797 e~~~~~~--~igyPvvvKP~~ 815 (1190)
.+.+.++ .+|-+..++-.+
T Consensus 157 ~~k~~i~~G~iG~i~~v~~~~ 177 (350)
T 3rc1_A 157 QVADMLDEGVIGEIRSFAASF 177 (350)
T ss_dssp HHHHHHHTTTTCSEEEEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEEEE
Confidence 5666655 467666665443
No 360
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=73.09 E-value=2.7 Score=44.22 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=47.1
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCcc-eEE-ECCCCHHHHHHHHHH---
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLAD-RTY-ITPMTPELVEQVLEK--- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~ad-~~~-i~p~~~~~v~~i~~~--- 165 (1190)
.++|||+|++.. -|+.+++.|.+.|++|++++.++..... ...... ..+ .+-.+.+.+.++++.
T Consensus 5 ~k~vlVtGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 5 KGAVLITGASRG----------IGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp CCEEEESSTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHH
Confidence 468999998742 3889999999999999999865431100 000001 122 333466666665553
Q ss_pred --cCCCEEEecCC
Q 001014 166 --ERPDALLPTMG 176 (1190)
Q Consensus 166 --~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 75 ~~~~id~li~~Ag 87 (234)
T 2ehd_A 75 AFGELSALVNNAG 87 (234)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 27899987654
No 361
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=73.09 E-value=13 Score=40.18 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC-----------cce--EE-ECCCCH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGL-----------ADR--TY-ITPMTP 156 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~-----------ad~--~~-i~p~~~ 156 (1190)
..|++||+|++.- -|+.+++.|.+.|++|++++.+.......... ... .+ .+-.+.
T Consensus 5 ~~k~~lVTGas~G----------IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 74 (274)
T 3e03_A 5 SGKTLFITGASRG----------IGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREE 74 (274)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCH
T ss_pred CCcEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 3579999998753 27889999999999999998775432110000 011 12 233356
Q ss_pred HHHHHHHHH-----cCCCEEEecCC
Q 001014 157 ELVEQVLEK-----ERPDALLPTMG 176 (1190)
Q Consensus 157 ~~v~~i~~~-----~~~d~Vip~~~ 176 (1190)
+.+.+++++ -++|+++..-+
T Consensus 75 ~~v~~~~~~~~~~~g~iD~lvnnAG 99 (274)
T 3e03_A 75 DQVRAAVAATVDTFGGIDILVNNAS 99 (274)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 666665553 27899887655
No 362
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=73.00 E-value=5.6 Score=42.77 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----cc-Ccc-eEE-ECCCCHHHHHH
Q 001014 89 RTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PG-LAD-RTY-ITPMTPELVEQ 161 (1190)
Q Consensus 89 ~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~-~ad-~~~-i~p~~~~~v~~ 161 (1190)
....|++||+|++.- | |+.+++.|.+.|++|++++.+....... .. -.. ..+ .+-.+.+.+.+
T Consensus 8 ~l~~k~vlVTGas~g-I---------G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 8 LLTDKVVVISGVGPA-L---------GTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAH 77 (264)
T ss_dssp TTTTCEEEEESCCTT-H---------HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CcCCcEEEEECCCcH-H---------HHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 345679999998753 2 7899999999999999998764311000 00 001 122 23346666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|.++..-+
T Consensus 78 ~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHHcCCCcEEEECCC
Confidence 65542 7899986553
No 363
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=72.89 E-value=3.8 Score=44.11 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCCEEEEEcCC---ccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc----C-cceEE-ECCCCHHHHHH
Q 001014 91 DLRKILILGAG---PIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG----L-ADRTY-ITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G---~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~----~-ad~~~-i~p~~~~~v~~ 161 (1190)
..|+|||+|++ .+ |+.+++.|.+.|++|++++.++........ . ....+ .+-.+.+.+.+
T Consensus 8 ~~k~vlVTGas~~~gI-----------G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T 1qsg_A 8 SGKRILVTGVASKLSI-----------AYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDT 76 (265)
T ss_dssp TTCEEEECCCCSTTSH-----------HHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCCH-----------HHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHH
Confidence 45789999974 33 788999999999999999876510000000 0 01222 23345666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|+++..-+
T Consensus 77 ~~~~~~~~~g~iD~lv~~Ag 96 (265)
T 1qsg_A 77 MFAELGKVWPKFDGFVHSIG 96 (265)
T ss_dssp HHHHHHTTCSSEEEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 66542 6788886554
No 364
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=72.89 E-value=3 Score=45.43 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-------CccCc-c-eEE-ECCCCHHH
Q 001014 89 RTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-------DPGLA-D-RTY-ITPMTPEL 158 (1190)
Q Consensus 89 ~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-------~~~~a-d-~~~-i~p~~~~~ 158 (1190)
....|+|||+|++.- -|+.+++.|.+.|++|++++.++..... ..... . ..+ .+-.+.+.
T Consensus 8 ~l~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~ 77 (281)
T 3svt_A 8 SFQDRTYLVTGGGSG----------IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDE 77 (281)
T ss_dssp CCTTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHH
T ss_pred CcCCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHH
Confidence 345679999998753 2789999999999999999876431100 00000 1 112 23335666
Q ss_pred HHHHHHHc-----CCCEEEecCC
Q 001014 159 VEQVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 159 v~~i~~~~-----~~d~Vip~~~ 176 (1190)
+.+++++. ++|.++..-+
T Consensus 78 v~~~~~~~~~~~g~id~lv~nAg 100 (281)
T 3svt_A 78 TARAVDAVTAWHGRLHGVVHCAG 100 (281)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666542 7899987655
No 365
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=72.86 E-value=5.3 Score=42.43 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCcce-EE-ECCCCHHHHHHHHHH---
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLADR-TY-ITPMTPELVEQVLEK--- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~-~~-i~p~~~~~v~~i~~~--- 165 (1190)
.|+|||+|++.- -|+.+++.|.+.|++|++++.+...... ....... .+ .+-.+.+.+.+++++
T Consensus 2 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 71 (247)
T 3dii_A 2 NRGVIVTGGGHG----------IGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeEEeeCCCHHHHHHHHHHHHH
Confidence 468999998753 2789999999999999999876421100 0011111 22 233466666666553
Q ss_pred --cCCCEEEecCC
Q 001014 166 --ERPDALLPTMG 176 (1190)
Q Consensus 166 --~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 72 ~~g~id~lv~nAg 84 (247)
T 3dii_A 72 KLQRIDVLVNNAC 84 (247)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 27999987654
No 366
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=72.86 E-value=4.3 Score=43.26 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc----Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG----LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~----~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.+ ..+ .+-.+.+.+.+++
T Consensus 12 ~~k~vlItGasgg----------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 81 (260)
T 3awd_A 12 DNRVAIVTGGAQN----------IGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAV 81 (260)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 3578999998742 38899999999999999998664311000 00 011 122 3334666666665
Q ss_pred HH-----cCCCEEEecCC
Q 001014 164 EK-----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~-----~~~d~Vip~~~ 176 (1190)
++ .++|+++...+
T Consensus 82 ~~~~~~~~~id~vi~~Ag 99 (260)
T 3awd_A 82 RSVHEQEGRVDILVACAG 99 (260)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 53 27899986554
No 367
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=72.78 E-value=8.8 Score=41.14 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC-----CCcc--Ccc-eEE-ECCCCHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM-----TDPG--LAD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~-----~~~~--~ad-~~~-i~p~~~~~v~~i 162 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++.... .... -.. ..+ .+-.+.+.+.++
T Consensus 7 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~ 76 (267)
T 2gdz_A 7 GKVALVTGAAQG----------IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDT 76 (267)
T ss_dssp TCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHH
T ss_pred CCEEEEECCCCc----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHH
Confidence 468999998742 378999999999999999986542110 0000 011 122 233466666666
Q ss_pred HHH-----cCCCEEEecCC
Q 001014 163 LEK-----ERPDALLPTMG 176 (1190)
Q Consensus 163 ~~~-----~~~d~Vip~~~ 176 (1190)
++. .++|+++...+
T Consensus 77 ~~~~~~~~g~id~lv~~Ag 95 (267)
T 2gdz_A 77 FRKVVDHFGRLDILVNNAG 95 (267)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 554 26899987655
No 368
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=72.76 E-value=4.1 Score=43.00 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC-CHHHHHHHHH-HcCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM-TPELVEQVLE-KERP 168 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~-~~~~v~~i~~-~~~~ 168 (1190)
..+||.|||.|.+ |..+++.|++.|++|+.++.... ..-+| ....|. ....+.+-+. ..++
T Consensus 5 ~~mkI~IIG~G~~-----------G~sLA~~L~~~G~~V~~~~~~~~-----~~~aD-ilavP~~ai~~vl~~l~~~l~~ 67 (232)
T 3dfu_A 5 PRLRVGIFDDGSS-----------TVNMAEKLDSVGHYVTVLHAPED-----IRDFE-LVVIDAHGVEGYVEKLSAFARR 67 (232)
T ss_dssp CCCEEEEECCSCC-----------CSCHHHHHHHTTCEEEECSSGGG-----GGGCS-EEEECSSCHHHHHHHHHTTCCT
T ss_pred CCcEEEEEeeCHH-----------HHHHHHHHHHCCCEEEEecCHHH-----hccCC-EEEEcHHHHHHHHHHHHHhcCC
Confidence 3469999999965 45689999999999999876422 23466 544444 3333333232 3356
Q ss_pred CEEEecCCC
Q 001014 169 DALLPTMGG 177 (1190)
Q Consensus 169 d~Vip~~~g 177 (1190)
+.++....|
T Consensus 68 g~ivvd~sg 76 (232)
T 3dfu_A 68 GQMFLHTSL 76 (232)
T ss_dssp TCEEEECCS
T ss_pred CCEEEEECC
Confidence 666554433
No 369
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=72.76 E-value=3.3 Score=44.77 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=31.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETV 690 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~ 690 (1190)
...|+|||.|++.. ||+ .+++.|.+.|++|++++.+++..
T Consensus 26 l~gk~vlVTGas~g-IG~---------aia~~la~~G~~V~~~~r~~~~~ 65 (266)
T 3uxy_A 26 FEGKVALVTGAAGG-IGG---------AVVTALRAAGARVAVADRAVAGI 65 (266)
T ss_dssp CTTCEEEESSTTSH-HHH---------HHHHHHHHTTCEEEECSSCCTTS
T ss_pred CCCCEEEEeCCCcH-HHH---------HHHHHHHHCCCEEEEEeCCHHHH
Confidence 45689999998774 555 44999999999999998876544
No 370
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=72.73 E-value=3.6 Score=44.44 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC---C-ccCcc-eEE-ECCCCHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT---D-PGLAD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~---~-~~~ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++..... . ..... ..+ .+-.+.+.+.++++
T Consensus 15 ~~k~vlITGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 84 (278)
T 2bgk_A 15 QDKVAIITGGAGG----------IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVD 84 (278)
T ss_dssp TTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred cCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHH
Confidence 3578999998742 3889999999999999999765421100 0 00001 122 33346666666665
Q ss_pred H-----cCCCEEEecCC
Q 001014 165 K-----ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-----~~~d~Vip~~~ 176 (1190)
+ .++|+++...+
T Consensus 85 ~~~~~~~~id~li~~Ag 101 (278)
T 2bgk_A 85 TTIAKHGKLDIMFGNVG 101 (278)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 3 27999986554
No 371
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=72.71 E-value=4.2 Score=43.72 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCcc-ccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 90 TDLRKILILGAGPI-VIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~-~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
...|+|||+|++.. -| |+.+++.|.+.|++|++++.+.
T Consensus 5 l~~k~vlVTGasg~~GI---------G~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSI---------AWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CTTCEEEEECCCSTTSH---------HHHHHHHHHHTTCEEEEEESSG
T ss_pred cCCCEEEEEcCCCCCcH---------HHHHHHHHHHCCCEEEEecCch
Confidence 34579999997631 12 7889999999999999997653
No 372
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=72.66 E-value=4.1 Score=43.32 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...|+|||.|++.. ||+. +++.|.+.|++|++++.+++.
T Consensus 13 l~~k~vlVTGas~g-IG~~---------ia~~l~~~G~~V~~~~r~~~~ 51 (247)
T 1uzm_A 13 FVSRSVLVTGGNRG-IGLA---------IAQRLAADGHKVAVTHRGSGA 51 (247)
T ss_dssp CCCCEEEETTTTSH-HHHH---------HHHHHHHTTCEEEEEESSSCC
T ss_pred CCCCEEEEeCCCCH-HHHH---------HHHHHHHCCCEEEEEeCChHH
Confidence 35688999998774 6554 499999999999999887654
No 373
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=72.65 E-value=1.7 Score=48.12 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
+++|+|||+|+ +|..++..|++.|++|++++.++.
T Consensus 7 ~~~vvIIG~G~-----------aGl~aA~~l~~~g~~v~lie~~~~ 41 (332)
T 3lzw_A 7 VYDITIIGGGP-----------VGLFTAFYGGMRQASVKIIESLPQ 41 (332)
T ss_dssp EEEEEEECCSH-----------HHHHHHHHHHHTTCCEEEECSSSS
T ss_pred cceEEEECCCH-----------HHHHHHHHHHHCCCCEEEEEcCCC
Confidence 35899999995 588999999999999999986553
No 374
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=72.65 E-value=4.7 Score=42.50 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=47.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCC--CeEEEEccCCCCCCCCcc--Ccc-eEE-ECCCCHHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEG--YEVILINSNPATIMTDPG--LAD-RTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G--~~vi~v~~~~~~~~~~~~--~ad-~~~-i~p~~~~~v~~i~~~ 165 (1190)
.++|||+|++.. -|+.+++.|.+.| ++|++++.++........ ... ..+ .+-.+.+.+.+++++
T Consensus 3 ~k~vlItGasgg----------iG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 3 PGSVVVTGANRG----------IGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CSEEEESSCSSH----------HHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEecCCch----------HHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHH
Confidence 468999998742 2789999999999 999999876542210000 011 222 233356666665553
Q ss_pred c-------CCCEEEecCC
Q 001014 166 E-------RPDALLPTMG 176 (1190)
Q Consensus 166 ~-------~~d~Vip~~~ 176 (1190)
. ++|+++...+
T Consensus 73 ~~~~~g~~~id~li~~Ag 90 (250)
T 1yo6_A 73 VGEIVGSDGLSLLINNAG 90 (250)
T ss_dssp HHHHHGGGCCCEEEECCC
T ss_pred HHHhcCCCCCcEEEECCc
Confidence 2 7999986554
No 375
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=72.61 E-value=3.1 Score=45.15 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=29.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.+|+|||+|+ +|..++..|++.|++|++++.++
T Consensus 3 ~~vvIIG~G~-----------aGl~aA~~l~~~g~~v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSY-----------AGLSAALQLGRARKNILLVDAGE 35 (297)
T ss_dssp EEEEEECCSH-----------HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999995 48899999999999999998653
No 376
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=72.50 E-value=2.8 Score=48.83 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=28.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCC--CeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEG--YEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G--~~vi~v~~~~ 136 (1190)
|+|+|||+| ++|..+++.|++.+ ++|++++.++
T Consensus 3 K~VvIIGgG-----------~aGl~aA~~L~~~~~~~~VtlI~~~~ 37 (430)
T 3hyw_A 3 KHVVVIGGG-----------VGGIATAYNLRNLMPDLKITLISDRP 37 (430)
T ss_dssp CEEEEECSS-----------HHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred CcEEEECCC-----------HHHHHHHHHHhccCcCCeEEEEcCCC
Confidence 589999999 56889999999875 8999998765
No 377
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=72.45 E-value=6.3 Score=42.06 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC-cc-eEE-ECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL-AD-RTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~-ad-~~~-i~p~~~~~v~~i~~~~ 166 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... ... .. ..+ .+-.+.+.+.+++++.
T Consensus 11 ~~k~vlVTGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (265)
T 2o23_A 11 KGLVAVITGGASG----------LGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALA 80 (265)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH
Confidence 3579999998742 37899999999999999998765421100 000 01 122 3334566666666532
Q ss_pred -----CCCEEEecCC
Q 001014 167 -----RPDALLPTMG 176 (1190)
Q Consensus 167 -----~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 81 ~~~~g~id~li~~Ag 95 (265)
T 2o23_A 81 KGKFGRVDVAVNCAG 95 (265)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHCCCCCEEEECCc
Confidence 7999986654
No 378
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=72.39 E-value=4.3 Score=43.38 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
...++|||+|++.. -|+.+++.|.+.|++|++++.++
T Consensus 5 ~~~k~vlITGasgg----------iG~~la~~l~~~G~~V~~~~r~~ 41 (264)
T 2pd6_A 5 LRSALALVTGAGSG----------IGRAVSVRLAGEGATVAACDLDR 41 (264)
T ss_dssp CTTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSH
T ss_pred cCCCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCh
Confidence 34579999998753 37899999999999999998654
No 379
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=72.39 E-value=5.5 Score=46.69 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=43.7
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCcccc-CCc-cee-ecCCcHHHHHHHhhhcCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYD-TSD-RLY-FEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~-~ad-~~~-~~p~~~e~v~~i~~~~~~ 719 (1190)
.++|+|+|+|. + +..++++|.+.|+++++++.+++....-.. ... ..+ .+-.+.+++.++++ ++
T Consensus 3 ~k~VlViGaG~--i---------G~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~ 69 (450)
T 1ff9_A 3 TKSVLMLGSGF--V---------TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KH 69 (450)
T ss_dssp CCEEEEECCST--T---------HHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TS
T ss_pred CCEEEEECCCH--H---------HHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CC
Confidence 57899999887 4 445588899999999988877543211000 000 011 12233556666554 68
Q ss_pred CccccccCC
Q 001014 720 EGIIVQFGG 728 (1190)
Q Consensus 720 d~Vi~~~g~ 728 (1190)
|.|+...+.
T Consensus 70 DvVIn~a~~ 78 (450)
T 1ff9_A 70 DLVISLIPY 78 (450)
T ss_dssp SEEEECCC-
T ss_pred cEEEECCcc
Confidence 888876654
No 380
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=72.34 E-value=6.5 Score=46.08 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCC-CCccCcc-eEE-ECCCCHHHHHHHHHHcCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIM-TDPGLAD-RTY-ITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~-~~~~~ad-~~~-i~p~~~~~v~~i~~~~~~ 168 (1190)
+++|+|+|+|.+ |+.++++|.+.|++|++++.++.... ....+.. ..+ .+-.+.+.+.++++ ++
T Consensus 3 ~k~VlViGaG~i-----------G~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~ 69 (450)
T 1ff9_A 3 TKSVLMLGSGFV-----------TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KH 69 (450)
T ss_dssp CCEEEEECCSTT-----------HHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TS
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CC
Confidence 468999999865 78899999999999998887643110 0011111 122 23345666766665 79
Q ss_pred CEEEecCCC
Q 001014 169 DALLPTMGG 177 (1190)
Q Consensus 169 d~Vip~~~g 177 (1190)
|+|+.+.+.
T Consensus 70 DvVIn~a~~ 78 (450)
T 1ff9_A 70 DLVISLIPY 78 (450)
T ss_dssp SEEEECCC-
T ss_pred cEEEECCcc
Confidence 999987763
No 381
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=72.10 E-value=3.7 Score=44.43 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC------ccCcceEE-ECCCCHHH
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD------PGLADRTY-ITPMTPEL 158 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~------~~~ad~~~-i~p~~~~~ 158 (1190)
|......|+|||.|++.- -|+.+++.|.+.|++|++++.+....... ....-..+ .+-.+.+.
T Consensus 22 m~~~l~~k~~lVTGas~G----------IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 91 (270)
T 3ftp_A 22 MDKTLDKQVAIVTGASRG----------IGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATA 91 (270)
T ss_dssp -CCTTTTCEEEETTCSSH----------HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHH
T ss_pred cccCCCCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHH
Confidence 344445678999998742 27899999999999999998764311000 00001122 33346666
Q ss_pred HHHHHHHc-----CCCEEEecCC
Q 001014 159 VEQVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 159 v~~i~~~~-----~~d~Vip~~~ 176 (1190)
+.+++++. ++|+++..-+
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 92 VDALVESTLKEFGALNVLVNNAG 114 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66655532 7899986654
No 382
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=72.08 E-value=12 Score=41.52 Aligned_cols=36 Identities=39% Similarity=0.635 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
+++||.|||.|.. |..+++.|.+.|++|++++.++.
T Consensus 30 ~~~~I~iIG~G~m-----------G~~~a~~l~~~G~~V~~~dr~~~ 65 (320)
T 4dll_A 30 YARKITFLGTGSM-----------GLPMARRLCEAGYALQVWNRTPA 65 (320)
T ss_dssp CCSEEEEECCTTT-----------HHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEECccHH-----------HHHHHHHHHhCCCeEEEEcCCHH
Confidence 4569999999965 78899999999999999987754
No 383
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=72.06 E-value=4 Score=43.80 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCc-c-eEE-ECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLA-D-RTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~a-d-~~~-i~p~~~~~v~~i~~~~ 166 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .... . ..+ .+-.+.+.+.+++++.
T Consensus 11 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~ 80 (263)
T 3ak4_A 11 SGRKAIVTGGSKG----------IGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKA 80 (263)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHH
Confidence 3579999998753 27899999999999999998764211000 0000 1 122 3334566666655532
Q ss_pred -----CCCEEEecCC
Q 001014 167 -----RPDALLPTMG 176 (1190)
Q Consensus 167 -----~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 81 ~~~~g~iD~lv~~Ag 95 (263)
T 3ak4_A 81 IDALGGFDLLCANAG 95 (263)
T ss_dssp HHHHTCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 7999987654
No 384
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=72.06 E-value=11 Score=41.62 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=47.5
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc-----Ccc-eEEE-CCCCHHHHHHHHH
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG-----LAD-RTYI-TPMTPELVEQVLE 164 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~-----~ad-~~~i-~p~~~~~v~~i~~ 164 (1190)
++|||+|+.. +-|..+++.|.+.|++|++++......... .. -.. ..+. +-.+.+.+.++++
T Consensus 1 m~vlVTGatG----------~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 70 (338)
T 1udb_A 1 MRVLVTGGSG----------YIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILH 70 (338)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCC----------HHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhh
Confidence 3799999854 338899999999999999986432211100 00 001 2222 3346677888887
Q ss_pred HcCCCEEEecCC
Q 001014 165 KERPDALLPTMG 176 (1190)
Q Consensus 165 ~~~~d~Vip~~~ 176 (1190)
..++|+|+-..+
T Consensus 71 ~~~~D~vih~A~ 82 (338)
T 1udb_A 71 DHAIDTVIHFAG 82 (338)
T ss_dssp HTTCSEEEECCS
T ss_pred ccCCCEEEECCc
Confidence 668999986554
No 385
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=72.04 E-value=2.4 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
+.++|+|||+|+ +|..++..|++.|++|++++.++
T Consensus 21 ~~~~vvIIG~G~-----------aGl~aA~~l~~~g~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGP-----------AAHTAAIYLARAEIKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSH-----------HHHHHHHHHHHTTCCCEEECCSS
T ss_pred CCCCEEEECcCH-----------HHHHHHHHHHHCCCCEEEEecCC
Confidence 456999999995 48899999999999999998754
No 386
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=72.03 E-value=2.3 Score=45.89 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=44.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
.|+|||+|++.. ||+ .+++.|.+.|++|++++.++...... -..-+..+-.+.+.+.++++ ++|.|
T Consensus 3 ~k~vlVTGasg~-IG~---------~la~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~Dl~d~~~~~~~~~--~~D~v 68 (267)
T 3rft_A 3 MKRLLVTGAAGQ-LGR---------VMRERLAPMAEILRLADLSPLDPAGP--NEECVQCDLADANAVNAMVA--GCDGI 68 (267)
T ss_dssp EEEEEEESTTSH-HHH---------HHHHHTGGGEEEEEEEESSCCCCCCT--TEEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred CCEEEEECCCCH-HHH---------HHHHHHHhcCCEEEEEecCCccccCC--CCEEEEcCCCCHHHHHHHHc--CCCEE
Confidence 478999998764 655 44999999999999998876543211 01111112234667777765 67877
Q ss_pred ccc
Q 001014 723 IVQ 725 (1190)
Q Consensus 723 i~~ 725 (1190)
|-.
T Consensus 69 i~~ 71 (267)
T 3rft_A 69 VHL 71 (267)
T ss_dssp EEC
T ss_pred EEC
Confidence 643
No 387
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=72.00 E-value=4 Score=43.64 Aligned_cols=39 Identities=13% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...|++||.|++.. ||+ .+++.|.+.|++|++++.+++.
T Consensus 5 l~~k~~lVTGas~g-IG~---------aia~~l~~~G~~V~~~~r~~~~ 43 (257)
T 3tpc_A 5 LKSRVFIVTGASSG-LGA---------AVTRMLAQEGATVLGLDLKPPA 43 (257)
T ss_dssp CTTCEEEEESTTSH-HHH---------HHHHHHHHTTCEEEEEESSCC-
T ss_pred cCCCEEEEeCCCCH-HHH---------HHHHHHHHCCCEEEEEeCChHH
Confidence 35689999998774 555 4499999999999999887654
No 388
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=71.99 E-value=2.9 Score=47.78 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=29.6
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
+||+|+|+|+- |..++..|++.|++|.+++..+.
T Consensus 2 m~V~IVGaGpa-----------Gl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIG-----------GTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHH-----------HHHHHHHHHhCCCCEEEEecCCC
Confidence 48999999963 88999999999999999976544
No 389
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=71.99 E-value=15 Score=39.64 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 87 GKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 87 ~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
......|++||+|++.- -|+.+++.|.+.|++|++++.+
T Consensus 6 ~~~l~~k~~lVTGas~G----------IG~a~a~~la~~G~~V~~~~r~ 44 (277)
T 3tsc_A 6 AGKLEGRVAFITGAARG----------QGRAHAVRMAAEGADIIAVDIA 44 (277)
T ss_dssp -CTTTTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEECC
T ss_pred ccccCCCEEEEECCccH----------HHHHHHHHHHHcCCEEEEEecc
Confidence 33345679999998752 2789999999999999999764
No 390
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=71.78 E-value=3.4 Score=45.49 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=41.4
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCcc
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEGI 722 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~V 722 (1190)
+++|||+|+.+. ||+ ++++.|.+.|++|++++.++.... ..-. ..+...++.+.+.++++ ++|.|
T Consensus 2 ~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~--~~~~-~~~~~Dl~~~~~~~~~~--~~d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGF-LGQ---------YVVESIKNDGNTPIILTRSIGNKA--INDY-EYRVSDYTLEDLINQLN--DVDAV 66 (311)
T ss_dssp CCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESCCC-------CC-EEEECCCCHHHHHHHTT--TCSEE
T ss_pred CCEEEEECCCcH-HHH---------HHHHHHHhCCCEEEEEeCCCCccc--CCce-EEEEccccHHHHHHhhc--CCCEE
Confidence 378999997664 555 559999999999999988743322 1111 11112223555666654 77877
Q ss_pred ccc
Q 001014 723 IVQ 725 (1190)
Q Consensus 723 i~~ 725 (1190)
|-.
T Consensus 67 ih~ 69 (311)
T 3m2p_A 67 VHL 69 (311)
T ss_dssp EEC
T ss_pred EEc
Confidence 743
No 391
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=71.73 E-value=4.7 Score=43.86 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC-CCCCC------CccCcceE-E-ECCCCHHHHH
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP-ATIMT------DPGLADRT-Y-ITPMTPELVE 160 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~-~~~~~------~~~~ad~~-~-i~p~~~~~v~ 160 (1190)
.+.|++||.|++.- -|+.+++.|.+.|++|++++.+. ..... ...-.... + .+-.+.+.+.
T Consensus 23 l~~k~~lVTGas~G----------IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 92 (281)
T 3v2h_A 23 MMTKTAVITGSTSG----------IGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIA 92 (281)
T ss_dssp CTTCEEEEETCSSH----------HHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHH
T ss_pred cCCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHH
Confidence 34579999998742 27899999999999999997632 10000 00001111 2 2233566666
Q ss_pred HHHHHc-----CCCEEEecCC
Q 001014 161 QVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 161 ~i~~~~-----~~d~Vip~~~ 176 (1190)
+++++. ++|+++..-+
T Consensus 93 ~~~~~~~~~~g~iD~lv~nAg 113 (281)
T 3v2h_A 93 DMMAMVADRFGGADILVNNAG 113 (281)
T ss_dssp HHHHHHHHHTSSCSEEEECCC
T ss_pred HHHHHHHHHCCCCCEEEECCC
Confidence 655532 7899986554
No 392
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=71.72 E-value=4.5 Score=43.05 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=44.7
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCC---CHHHHHHHHHHc--C
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPM---TPELVEQVLEKE--R 167 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~---~~~~v~~i~~~~--~ 167 (1190)
|+|||+|++.. -|+.+++.|.+.|++|++++.++..... + ... +.+.+.+++++. +
T Consensus 2 k~vlVTGas~g----------IG~~~a~~l~~~G~~V~~~~r~~~~~~~-----~----~~~Dl~~~~~v~~~~~~~~~~ 62 (257)
T 1fjh_A 2 SIIVISGCATG----------IGAATRKVLEAAGHQIVGIDIRDAEVIA-----D----LSTAEGRKQAIADVLAKCSKG 62 (257)
T ss_dssp CEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSSSSEEC-----C----TTSHHHHHHHHHHHHTTCTTC
T ss_pred CEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCCchhhcc-----c----cccCCCCHHHHHHHHHHhCCC
Confidence 58999998742 2789999999999999999876542210 0 122 234566666553 6
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|+++...+
T Consensus 63 id~lv~~Ag 71 (257)
T 1fjh_A 63 MDGLVLCAG 71 (257)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 799987654
No 393
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=71.70 E-value=10 Score=39.15 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
.+++|+|||.|.. |..+++.|.+.|++|++++.++.
T Consensus 18 ~~~~I~iiG~G~m-----------G~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 18 QGMEITIFGKGNM-----------GQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp --CEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEcCCHH
Confidence 3468999999965 78899999999999999987665
No 394
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=71.63 E-value=4.1 Score=43.99 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=48.7
Q ss_pred cCCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccC-cc-eEE-ECCCCH
Q 001014 85 KLGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PGL-AD-RTY-ITPMTP 156 (1190)
Q Consensus 85 ~m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~-ad-~~~-i~p~~~ 156 (1190)
+|+.....|++||+|++.- -|+.+++.|.+.|++|++++.+....... ... .+ ..+ .+-.+.
T Consensus 11 ~~~~~l~~k~~lVTGas~g----------IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 80 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRG----------IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQV 80 (270)
T ss_dssp CCTTCCTTCEEEESCTTSH----------HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred cCCCCcCCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence 3444455689999998752 27889999999999999976543210000 000 11 122 233356
Q ss_pred HHHHHHHHHc-----CCCEEEecCC
Q 001014 157 ELVEQVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 157 ~~v~~i~~~~-----~~d~Vip~~~ 176 (1190)
+.+.+++++. ++|+++..-+
T Consensus 81 ~~v~~~~~~~~~~~g~id~lvnnAg 105 (270)
T 3is3_A 81 PEIVKLFDQAVAHFGHLDIAVSNSG 105 (270)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6666655542 7898886544
No 395
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=71.63 E-value=4.7 Score=42.46 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=45.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEE-ECCC-CHHHHHHHHH----H
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTY-ITPM-TPELVEQVLE----K 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~-i~p~-~~~~v~~i~~----~ 165 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++.... ....+ ...+ +.+.+.++++ +
T Consensus 3 ~k~vlITGas~g----------IG~~~a~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 67 (236)
T 1ooe_A 3 SGKVIVYGGKGA----------LGSAILEFFKKNGYTVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASS 67 (236)
T ss_dssp CEEEEEETTTSH----------HHHHHHHHHHHTTEEEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHH
Confidence 368999998742 278999999999999999987765321 11122 1222 3444444443 3
Q ss_pred ---cCCCEEEecCC
Q 001014 166 ---ERPDALLPTMG 176 (1190)
Q Consensus 166 ---~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 68 ~~~g~id~lv~~Ag 81 (236)
T 1ooe_A 68 LQGSQVDGVFCVAG 81 (236)
T ss_dssp HTTCCEEEEEECCC
T ss_pred hCCCCCCEEEECCc
Confidence 27899987655
No 396
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}
Probab=71.59 E-value=8.4 Score=41.13 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=47.1
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEEe
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALLP 173 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vip 173 (1190)
+|||+|+.. +-|..+++.|.+ |++|++++.++... . ....+-.+.+.+.++++..++|.|+-
T Consensus 2 ~ilVtGatG----------~iG~~l~~~L~~-g~~V~~~~r~~~~~------~-~~~~Dl~~~~~~~~~~~~~~~d~vi~ 63 (273)
T 2ggs_A 2 RTLITGASG----------QLGIELSRLLSE-RHEVIKVYNSSEIQ------G-GYKLDLTDFPRLEDFIIKKRPDVIIN 63 (273)
T ss_dssp CEEEETTTS----------HHHHHHHHHHTT-TSCEEEEESSSCCT------T-CEECCTTSHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCC----------hhHHHHHHHHhc-CCeEEEecCCCcCC------C-CceeccCCHHHHHHHHHhcCCCEEEE
Confidence 799999753 338899999995 99999998766321 1 13333446778888887778999997
Q ss_pred cCC
Q 001014 174 TMG 176 (1190)
Q Consensus 174 ~~~ 176 (1190)
..+
T Consensus 64 ~a~ 66 (273)
T 2ggs_A 64 AAA 66 (273)
T ss_dssp CCC
T ss_pred CCc
Confidence 655
No 397
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=71.18 E-value=3.4 Score=46.75 Aligned_cols=40 Identities=33% Similarity=0.451 Sum_probs=30.6
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEEecCCCCCc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIMMNSNPETV 690 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~v~~~p~~~ 690 (1190)
...++|||+|+.+. ||+ ++++.|.+. |++|++++.++...
T Consensus 22 m~~~~vlVtGatG~-iG~---------~l~~~L~~~~g~~V~~~~r~~~~~ 62 (372)
T 3slg_A 22 MKAKKVLILGVNGF-IGH---------HLSKRILETTDWEVFGMDMQTDRL 62 (372)
T ss_dssp -CCCEEEEESCSSH-HHH---------HHHHHHHHHSSCEEEEEESCCTTT
T ss_pred cCCCEEEEECCCCh-HHH---------HHHHHHHhCCCCEEEEEeCChhhh
Confidence 35689999998664 555 559999887 99999999876543
No 398
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=71.13 E-value=6.5 Score=41.51 Aligned_cols=102 Identities=17% Similarity=0.278 Sum_probs=57.5
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHCCCeEE-EEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEEE
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVI-LINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDALL 172 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi-~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~Vi 172 (1190)
||+|||.|.+ |..+++.+.+.|++++ +++.++. . . ..+ .+.+ +++. .++|+|+
T Consensus 2 ~vgiIG~G~m-----------G~~~~~~l~~~g~~lv~v~d~~~~--~--~----~~~---~~~~---~l~~-~~~DvVv 55 (236)
T 2dc1_A 2 LVGLIGYGAI-----------GKFLAEWLERNGFEIAAILDVRGE--H--E----KMV---RGID---EFLQ-REMDVAV 55 (236)
T ss_dssp EEEEECCSHH-----------HHHHHHHHHHTTCEEEEEECSSCC--C--T----TEE---SSHH---HHTT-SCCSEEE
T ss_pred EEEEECCCHH-----------HHHHHHHHhcCCCEEEEEEecCcc--h--h----hhc---CCHH---HHhc-CCCCEEE
Confidence 8999999964 6778888888999985 5555431 1 0 111 1233 3333 5899999
Q ss_pred ecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCC
Q 001014 173 PTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVK 227 (1190)
Q Consensus 173 p~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gip 227 (1190)
.+.........+. .+-+.|..++-.++-+.....-...+.+.+++.|..
T Consensus 56 ~~~~~~~~~~~~~------~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~ 104 (236)
T 2dc1_A 56 EAASQQAVKDYAE------KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR 104 (236)
T ss_dssp ECSCHHHHHHHHH------HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred ECCCHHHHHHHHH------HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence 8877444333332 123356776644432211111112445566777765
No 399
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=71.12 E-value=5.7 Score=43.19 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=46.4
Q ss_pred CCCEEEEEcCC---ccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc----Cc-ceEE-ECCCCHHHHHH
Q 001014 91 DLRKILILGAG---PIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG----LA-DRTY-ITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G---~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~----~a-d~~~-i~p~~~~~v~~ 161 (1190)
..|+|||+|++ .+ |+.+++.|.+.|++|++++.++........ .. -..+ .+-.+.+.+.+
T Consensus 20 ~~k~vlVTGas~~~gI-----------G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 88 (285)
T 2p91_A 20 EGKRALITGVANERSI-----------AYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKN 88 (285)
T ss_dssp TTCEEEECCCSSTTSH-----------HHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcH-----------HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 45789999974 33 789999999999999999866520000000 00 1122 33345666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
+++.. ++|+++..-+
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag 108 (285)
T 2p91_A 89 LKKFLEENWGSLDIIVHSIA 108 (285)
T ss_dssp HHHHHHHHTSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 55532 7899886654
No 400
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=71.08 E-value=4 Score=46.41 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=28.9
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
++|||+|+.+. ||+ ++++.|.+.|++|++++.++..
T Consensus 29 k~vlVtGatG~-IG~---------~l~~~L~~~g~~V~~~~r~~~~ 64 (381)
T 1n7h_A 29 KIALITGITGQ-DGS---------YLTEFLLGKGYEVHGLIRRSSN 64 (381)
T ss_dssp CEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECCCSS
T ss_pred CeEEEEcCCch-HHH---------HHHHHHHHCCCEEEEEecCCcc
Confidence 78999998664 555 5599999999999999877543
No 401
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=71.06 E-value=4.5 Score=44.19 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=44.9
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-CeEEEecCCCCCcCcc-c--cCCcceeecCCcHHHHHHHhhhcC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-YETIMMNSNPETVSTD-Y--DTSDRLYFEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-~~vi~v~~~p~~~s~~-~--~~ad~~~~~p~~~e~v~~i~~~~~ 718 (1190)
+++|||+|+... +|+ ++++.|.+.| ++|++++.++...... . .-......+-.+.+.+.+.++ +
T Consensus 5 ~~~ilVtGatG~-iG~---------~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~ 72 (299)
T 2wm3_A 5 KKLVVVFGGTGA-QGG---------SVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--G 72 (299)
T ss_dssp CCEEEEETTTSH-HHH---------HHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--T
T ss_pred CCEEEEECCCch-HHH---------HHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--c
Confidence 578999999654 555 4588888888 9999998887642100 0 001111112234666666664 5
Q ss_pred CCccccccC
Q 001014 719 PEGIIVQFG 727 (1190)
Q Consensus 719 ~d~Vi~~~g 727 (1190)
+|.|+...+
T Consensus 73 ~d~vi~~a~ 81 (299)
T 2wm3_A 73 AYATFIVTN 81 (299)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEeCC
Confidence 788876544
No 402
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=71.03 E-value=3.2 Score=45.11 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=29.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
+++|||+|+|. ||+ ++++.|.+.|++|++++.++..
T Consensus 3 ~~~ilVtGaG~--iG~---------~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGD--LGL---------ELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSH--HHH---------HHHHHHHHTTCCEEEEECTTSC
T ss_pred CCcEEEECCCH--HHH---------HHHHHHHHCCCEEEEEeCCccc
Confidence 46899999865 555 5599999999999999887654
No 403
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=70.97 E-value=2.4 Score=49.04 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=68.5
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCC---CeEEEecCCCCCcCcc---cc-----CCcceeecCCcHHHHHH
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG---YETIMMNSNPETVSTD---YD-----TSDRLYFEPLTVEDVLN 712 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G---~~vi~v~~~p~~~s~~---~~-----~ad~~~~~p~~~e~v~~ 712 (1190)
+||+|+|+|. +|+ .+++.|.+.| .++++.+.+++..... +. -......+-.+.+++.+
T Consensus 2 ~kVlIiGaGg--iG~---------~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~ 70 (405)
T 4ina_A 2 AKVLQIGAGG--VGG---------VVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVA 70 (405)
T ss_dssp CEEEEECCSH--HHH---------HHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCH--HHH---------HHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHH
Confidence 6899999975 555 4488898888 3888888875432110 00 00111112234677888
Q ss_pred HhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccC-CHHHH--hh--ccCHHHHHHHHHHcCCCC
Q 001014 713 VIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGT-SPDSI--DA--AEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~-~~~~i--~~--~~DK~~~~~~l~~~gIp~ 786 (1190)
+++..++|.|+...+......++..+. +.| ++++-. +.... .. ...-..+.+.+++.|+..
T Consensus 71 ~l~~~~~DvVin~ag~~~~~~v~~a~l----------~~g---~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~ 136 (405)
T 4ina_A 71 LINEVKPQIVLNIALPYQDLTIMEACL----------RTG---VPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMA 136 (405)
T ss_dssp HHHHHCCSEEEECSCGGGHHHHHHHHH----------HHT---CCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEE
T ss_pred HHHhhCCCEEEECCCcccChHHHHHHH----------HhC---CCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEE
Confidence 887778999987766544445666655 566 555421 11100 00 011135666778888875
No 404
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=70.95 E-value=3.3 Score=43.81 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
..|+|||+|++.. ||+. +++.|.+.|++|++++.+++.
T Consensus 6 ~~k~vlVTGas~g-IG~~---------ia~~l~~~G~~V~~~~r~~~~ 43 (241)
T 1dhr_A 6 EARRVLVYGGRGA-LGSR---------CVQAFRARNWWVASIDVVENE 43 (241)
T ss_dssp CCCEEEEETTTSH-HHHH---------HHHHHHTTTCEEEEEESSCCT
T ss_pred CCCEEEEECCCcH-HHHH---------HHHHHHhCCCEEEEEeCChhh
Confidence 4678999998774 6554 499999999999999887654
No 405
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=70.95 E-value=16 Score=41.01 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-----------cCcceE--E-ECCCCH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-----------GLADRT--Y-ITPMTP 156 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-----------~~ad~~--~-i~p~~~ 156 (1190)
..|+|||+|++.- | |+.+++.|.+.|++|++++.+........ ...... + .+-.+.
T Consensus 44 ~gk~vlVTGas~G-I---------G~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~ 113 (346)
T 3kvo_A 44 AGCTVFITGASRG-I---------GKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDE 113 (346)
T ss_dssp TTCEEEEETTTSH-H---------HHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred CCCEEEEeCCChH-H---------HHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence 4579999998742 2 78899999999999999987655321100 001111 2 233366
Q ss_pred HHHHHHHHHc-----CCCEEEecCC
Q 001014 157 ELVEQVLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 157 ~~v~~i~~~~-----~~d~Vip~~~ 176 (1190)
+.+.+++++. ++|+++..-+
T Consensus 114 ~~v~~~~~~~~~~~g~iDilVnnAG 138 (346)
T 3kvo_A 114 QQISAAVEKAIKKFGGIDILVNNAS 138 (346)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6666655532 7899886654
No 406
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=70.75 E-value=8.2 Score=42.14 Aligned_cols=85 Identities=22% Similarity=0.217 Sum_probs=48.3
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC-cCc-c---------ccCCcceeecCCcHHHHH
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET-VST-D---------YDTSDRLYFEPLTVEDVL 711 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~-~s~-~---------~~~ad~~~~~p~~~e~v~ 711 (1190)
+++|+|+|+.+. +|+ +++++|.+.|++|++++.++.. ... . ..-..-+..+-.+.+.+.
T Consensus 2 ~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~ 71 (307)
T 2gas_A 2 ENKILILGPTGA-IGR---------HIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLV 71 (307)
T ss_dssp CCCEEEESTTST-THH---------HHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHH
T ss_pred CcEEEEECCCch-HHH---------HHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHH
Confidence 468999998553 555 5599999999999999877511 000 0 000111111223466676
Q ss_pred HHhhhcCCCccccccCCc---hhhhhhhhHH
Q 001014 712 NVIDLERPEGIIVQFGGQ---TPLKLSLPIH 739 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~~~g~~---~~~~la~~l~ 739 (1190)
+.++ ++|.||...+.. ...++.+.+.
T Consensus 72 ~~~~--~~d~vi~~a~~~~~~~~~~l~~aa~ 100 (307)
T 2gas_A 72 KAIK--QVDIVICAAGRLLIEDQVKIIKAIK 100 (307)
T ss_dssp HHHT--TCSEEEECSSSSCGGGHHHHHHHHH
T ss_pred HHHh--CCCEEEECCcccccccHHHHHHHHH
Confidence 6664 588887655432 2234444444
No 407
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=70.69 E-value=2.7 Score=47.21 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
...++|||+|+.+. ||+ ++++.|.+.|++|++++.++.
T Consensus 23 ~~~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 23 FSPKTWLITGVAGF-IGS---------NLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp HSCCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECCSS
T ss_pred CCCCeEEEECCCcH-HHH---------HHHHHHHHCCCEEEEEeCCCC
Confidence 35689999998664 544 559999999999999987654
No 408
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=70.68 E-value=2.3 Score=48.54 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=44.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc-CcceEEECCCCHHHHHHHHHHcCCCE
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG-LADRTYITPMTPELVEQVLEKERPDA 170 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~i~p~~~~~v~~i~~~~~~d~ 170 (1190)
.++|+|+|+|.+ |..+++.|+..|++|++++.++........ ..........+.+.+.+.++ +.|.
T Consensus 166 ~~~V~ViGaG~i-----------G~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~--~~Dv 232 (369)
T 2eez_A 166 PASVVILGGGTV-----------GTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ--HADL 232 (369)
T ss_dssp CCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH--HCSE
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh--CCCE
Confidence 479999999965 788999999999999999876532100000 11111111123455555554 5788
Q ss_pred EEecCC
Q 001014 171 LLPTMG 176 (1190)
Q Consensus 171 Vip~~~ 176 (1190)
|+.+.+
T Consensus 233 Vi~~~g 238 (369)
T 2eez_A 233 LIGAVL 238 (369)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 876554
No 409
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=70.68 E-value=3.7 Score=43.60 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC-cc--eEE-ECCCCHHHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL-AD--RTY-ITPMTPELVEQVLEK 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~-ad--~~~-i~p~~~~~v~~i~~~ 165 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... ... .+ ..+ .+-.+.+.+.++++.
T Consensus 10 ~~k~vlITGasgg----------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 10 DGACAAVTGAGSG----------IGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHH
Confidence 3578999998742 37899999999999999998764311000 000 01 222 333466666666554
Q ss_pred ----cCCCEEEecCC
Q 001014 166 ----ERPDALLPTMG 176 (1190)
Q Consensus 166 ----~~~d~Vip~~~ 176 (1190)
.++|+++...+
T Consensus 80 ~~~~~~id~li~~Ag 94 (254)
T 2wsb_A 80 AEAVAPVSILVNSAG 94 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhhCCCcEEEECCc
Confidence 47899986554
No 410
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=70.67 E-value=5.6 Score=45.32 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCccccC-Ccceeec---CCc-HHHHHHHh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYDT-SDRLYFE---PLT-VEDVLNVI 714 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~~-ad~~~~~---p~~-~e~v~~i~ 714 (1190)
...++|||+|+|+ +| ..+++.++.+|. +|++++.+++.......+ +|..+.. ..+ .+.+.++.
T Consensus 192 ~~g~~VlV~GaG~--vG---------~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~ 260 (378)
T 3uko_A 192 EPGSNVAIFGLGT--VG---------LAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLT 260 (378)
T ss_dssp CTTCCEEEECCSH--HH---------HHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECCCH--HH---------HHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhc
Confidence 3567899999988 44 455888888999 799998777654321111 2322211 112 44455555
Q ss_pred hhcCCCccccccCCchh
Q 001014 715 DLERPEGIIVQFGGQTP 731 (1190)
Q Consensus 715 ~~~~~d~Vi~~~g~~~~ 731 (1190)
.. .+|.|+-..++...
T Consensus 261 ~g-g~D~vid~~g~~~~ 276 (378)
T 3uko_A 261 DG-GVDYSFECIGNVSV 276 (378)
T ss_dssp TS-CBSEEEECSCCHHH
T ss_pred CC-CCCEEEECCCCHHH
Confidence 44 78999887776533
No 411
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=70.66 E-value=5.9 Score=43.47 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccC-cc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PGL-AD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~-ad-~~~-i~p~~~~~v~~i 162 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.+....... ... .. ..+ .+-.+.+.+.++
T Consensus 40 ~~k~vlVTGas~G----------IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~ 109 (293)
T 3rih_A 40 SARSVLVTGGTKG----------IGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADA 109 (293)
T ss_dssp TTCEEEETTTTSH----------HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHH
Confidence 4578999998742 27899999999999999998765421100 000 11 122 333466666665
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|+++..-+
T Consensus 110 ~~~~~~~~g~iD~lvnnAg 128 (293)
T 3rih_A 110 ARTVVDAFGALDVVCANAG 128 (293)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 5532 7899986554
No 412
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=70.59 E-value=2.6 Score=44.60 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC--CCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA--GYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~--G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
..++|||+|+... ||+ ++++.|.+. |++|++++.++........-...+..+-.+.+.+.++++ ++
T Consensus 3 ~~~~ilVtGasG~-iG~---------~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~ 70 (253)
T 1xq6_A 3 NLPTVLVTGASGR-TGQ---------IVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GI 70 (253)
T ss_dssp SCCEEEEESTTSH-HHH---------HHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TC
T ss_pred CCCEEEEEcCCcH-HHH---------HHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CC
Confidence 4689999998664 555 559999888 899999988753321100001111112234666766664 57
Q ss_pred CccccccC
Q 001014 720 EGIIVQFG 727 (1190)
Q Consensus 720 d~Vi~~~g 727 (1190)
|.|+-..+
T Consensus 71 d~vi~~a~ 78 (253)
T 1xq6_A 71 DALVILTS 78 (253)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 87775443
No 413
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=70.58 E-value=5.1 Score=42.74 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.++
T Consensus 11 ~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~ 46 (252)
T 3f1l_A 11 NDRIILVTGASDG----------IGREAAMTYARYGATVILLGRNE 46 (252)
T ss_dssp TTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999998742 27889999999999999998764
No 414
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=70.57 E-value=4 Score=42.96 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=45.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCC--eEEEEccCCCCCCCCccCcc-eEEECCC-CHHHHHHHHHHcC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGY--EVILINSNPATIMTDPGLAD-RTYITPM-TPELVEQVLEKER 167 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~--~vi~v~~~~~~~~~~~~~ad-~~~i~p~-~~~~v~~i~~~~~ 167 (1190)
.|+|||+|+.. +-|+.+++.|.+.|+ +|++++.++...... .... ..+...+ +.+.+.+.++ +
T Consensus 18 ~~~vlVtGasg----------~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~--~ 84 (242)
T 2bka_A 18 NKSVFILGASG----------ETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-AYKNVNQEVVDFEKLDDYASAFQ--G 84 (242)
T ss_dssp CCEEEEECTTS----------HHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-GGGGCEEEECCGGGGGGGGGGGS--S
T ss_pred CCeEEEECCCc----------HHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc-ccCCceEEecCcCCHHHHHHHhc--C
Confidence 46899999753 238899999999999 999998776533210 0011 1222222 3344444443 7
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|+|+...+
T Consensus 85 ~d~vi~~ag 93 (242)
T 2bka_A 85 HDVGFCCLG 93 (242)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999997766
No 415
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=70.56 E-value=3.6 Score=44.48 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCcc-eEE-ECCCCHHHHHHHHHHc-
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLAD-RTY-ITPMTPELVEQVLEKE- 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~ad-~~~-i~p~~~~~v~~i~~~~- 166 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++..... ...... ..+ .+-.+.+.+.+++++.
T Consensus 8 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 77 (270)
T 1yde_A 8 AGKVVVVTGGGRG----------IGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETI 77 (270)
T ss_dssp TTCEEEEETCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 3578999998742 2789999999999999999876431100 000111 222 3334666666665532
Q ss_pred ----CCCEEEecCC
Q 001014 167 ----RPDALLPTMG 176 (1190)
Q Consensus 167 ----~~d~Vip~~~ 176 (1190)
++|+++...+
T Consensus 78 ~~~g~iD~lv~nAg 91 (270)
T 1yde_A 78 RRFGRLDCVVNNAG 91 (270)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 7999986654
No 416
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=70.43 E-value=2.7 Score=47.81 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcce---eecCCcHHHHHHHhhhc
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRL---YFEPLTVEDVLNVIDLE 717 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~---~~~p~~~e~v~~i~~~~ 717 (1190)
...++|+|+|+|. +|+ .+++.|.+. +++.+.+.+++.... .++.. ..+-.+.+++.++++
T Consensus 14 ~~~~~v~IiGaG~--iG~---------~ia~~L~~~-~~V~V~~R~~~~a~~---la~~~~~~~~d~~~~~~l~~ll~-- 76 (365)
T 2z2v_A 14 GRHMKVLILGAGN--IGR---------AIAWDLKDE-FDVYIGDVNNENLEK---VKEFATPLKVDASNFDKLVEVMK-- 76 (365)
T ss_dssp --CCEEEEECCSH--HHH---------HHHHHHTTT-SEEEEEESCHHHHHH---HTTTSEEEECCTTCHHHHHHHHT--
T ss_pred CCCCeEEEEcCCH--HHH---------HHHHHHHcC-CeEEEEECCHHHHHH---HHhhCCeEEEecCCHHHHHHHHh--
Confidence 4568999999988 444 448888777 899999887654321 11111 111234566777665
Q ss_pred CCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCCC-CceeecCHH
Q 001014 718 RPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQP-KGGIAKSEA 796 (1190)
Q Consensus 718 ~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~p-~~~~~~s~~ 796 (1190)
++|.||..........++..+- +.| ..++-.+.. ..+-..+.+.+++.|+... ......-..
T Consensus 77 ~~DvVIn~~P~~~~~~v~~a~l----------~~G---~~~vD~s~~----~~~~~~l~~~Ak~aG~~~l~g~G~dPG~~ 139 (365)
T 2z2v_A 77 EFELVIGALPGFLGFKSIKAAI----------KSK---VDMVDVSFM----PENPLELRDEAEKAQVTIVFDAGFAPGLS 139 (365)
T ss_dssp TCSCEEECCCHHHHHHHHHHHH----------HTT---CCEEECCCC----SSCGGGGHHHHHHTTCEEECSCBTTTBHH
T ss_pred CCCEEEECCChhhhHHHHHHHH----------HhC---CeEEEccCC----cHHHHHHHHHHHHcCCEEEECCCCcchHH
Confidence 5788887654333334555544 566 555433321 1111345567788888763 323322333
Q ss_pred HH--HHHHHHhC
Q 001014 797 DA--LAIAKEIG 806 (1190)
Q Consensus 797 e~--~~~~~~ig 806 (1190)
.+ ...+++++
T Consensus 140 ~~~a~~~~~~~~ 151 (365)
T 2z2v_A 140 NILMGRIFQELD 151 (365)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcC
Confidence 33 33455555
No 417
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=70.43 E-value=16 Score=41.52 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=48.3
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHH-HCCCeEEEEccCCCCCCC------CccC--------------c---ce
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALK-EEGYEVILINSNPATIMT------DPGL--------------A---DR 148 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~-~~G~~vi~v~~~~~~~~~------~~~~--------------a---d~ 148 (1190)
|+|||+|+.. +-|..+++.|. +.|++|++++.++..... .... . -.
T Consensus 3 m~vlVTGatG----------~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (397)
T 1gy8_A 3 MRVLVCGGAG----------YIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAA 72 (397)
T ss_dssp CEEEEETTTS----------HHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCE
T ss_pred CEEEEECCCC----------HHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEE
Confidence 4899999753 33889999999 999999999765432100 0000 0 12
Q ss_pred EEE-CCCCHHHHHHHHHHcC-CCEEEecCC
Q 001014 149 TYI-TPMTPELVEQVLEKER-PDALLPTMG 176 (1190)
Q Consensus 149 ~~i-~p~~~~~v~~i~~~~~-~d~Vip~~~ 176 (1190)
.+. +-.+.+.+.+++++.+ +|+|+-..+
T Consensus 73 ~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~ 102 (397)
T 1gy8_A 73 LEVGDVRNEDFLNGVFTRHGPIDAVVHMCA 102 (397)
T ss_dssp EEESCTTCHHHHHHHHHHSCCCCEEEECCC
T ss_pred EEECCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 232 3346777888887766 999986654
No 418
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=70.40 E-value=5.8 Score=42.35 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceEEE-CCCCHHHHHHHHHH----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRTYI-TPMTPELVEQVLEK---- 165 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~i-~p~~~~~v~~i~~~---- 165 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++.. ... .......+. +-.+.+.+.+++++
T Consensus 6 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 6 GKGVLVTGGARG----------IGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp TCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHH
Confidence 478999998742 2789999999999999999876542 100 000012332 33356666665553
Q ss_pred -cCCCEEEecCC
Q 001014 166 -ERPDALLPTMG 176 (1190)
Q Consensus 166 -~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 75 ~g~iD~lv~~Ag 86 (256)
T 2d1y_A 75 LGRVDVLVNNAA 86 (256)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 27899986554
No 419
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=70.38 E-value=9.3 Score=36.82 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=57.0
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCC--CCCcC--cccc-C------Cccee-ecCC-cHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSN--PETVS--TDYD-T------SDRLY-FEPL-TVE 708 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~--p~~~s--~~~~-~------ad~~~-~~p~-~~e 708 (1190)
..++|.|+|.+.. -|+ -+..+++.+++.||+++-+|+. ..... ..|. + .|-.. +.|. ...
T Consensus 12 ~p~~vaVvGas~~-~g~------~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~~~ 84 (140)
T 1iuk_A 12 QAKTIAVLGAHKD-PSR------PAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALM 84 (140)
T ss_dssp HCCEEEEETCCSS-TTS------HHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHT
T ss_pred CCCEEEEECCCCC-CCC------hHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHHHH
Confidence 3578999999753 122 1445588899999998888776 32221 0111 1 11111 1111 133
Q ss_pred HHHHHhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCH
Q 001014 709 DVLNVIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSP 763 (1190)
Q Consensus 709 ~v~~i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~ 763 (1190)
++++-+.+.++.+++.+.+.. ...+++.++ +.| ++++||+-
T Consensus 85 ~v~~~~~~~gi~~i~~~~g~~-~~~~~~~a~----------~~G---ir~vgpnc 125 (140)
T 1iuk_A 85 DHLPEVLALRPGLVWLQSGIR-HPEFEKALK----------EAG---IPVVADRC 125 (140)
T ss_dssp TTHHHHHHHCCSCEEECTTCC-CHHHHHHHH----------HTT---CCEEESCC
T ss_pred HHHHHHHHcCCCEEEEcCCcC-HHHHHHHHH----------HcC---CEEEcCCc
Confidence 334444445677777665554 335666666 788 88888663
No 420
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Probab=70.33 E-value=9.7 Score=41.75 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=47.4
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHC--CCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHcCCCEE
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKERPDAL 171 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~~~d~V 171 (1190)
||||+|+... -|..+++.|.+. |++|++++.++.... -......+-.+.+.+.++++..++|+|
T Consensus 1 ~vlVtGatG~----------iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQ----------IGTELVPYLAEKYGKKNVIASDIVQRDTG----GIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTST----------THHHHHHHHHHHHCGGGEEEEESSCCCCT----TCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcH----------HHHHHHHHHHHhcCCCEEEEecCCCcccc----CceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 5899997432 288999999988 899999876543211 111122333467788888887789999
Q ss_pred EecCC
Q 001014 172 LPTMG 176 (1190)
Q Consensus 172 ip~~~ 176 (1190)
+-..+
T Consensus 67 ih~a~ 71 (317)
T 3ajr_A 67 FHLAG 71 (317)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 86554
No 421
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=70.32 E-value=6 Score=43.40 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCc-cccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC----c-ceEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGP-IVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGL----A-DRTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~-~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~----a-d~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++. .-| |+.+++.|.+.|++|++++.+.......... . ...+ .+-.+.+.+.+++
T Consensus 29 ~~k~vlVTGasg~~GI---------G~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 99 (296)
T 3k31_A 29 EGKKGVIIGVANDKSL---------AWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMF 99 (296)
T ss_dssp TTCEEEEECCCSTTSH---------HHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCH---------HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Confidence 457999999862 112 7889999999999999998764210000000 0 1222 3334666666666
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++..-+
T Consensus 100 ~~~~~~~g~iD~lVnnAG 117 (296)
T 3k31_A 100 KVLAEEWGSLDFVVHAVA 117 (296)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 542 7899987655
No 422
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=70.30 E-value=4.5 Score=46.65 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=50.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC-eEEEecCCCCCcCcccc-CCcceee--cCCcHHHHHHHhhh
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY-ETIMMNSNPETVSTDYD-TSDRLYF--EPLTVEDVLNVIDL 716 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~-~vi~v~~~p~~~s~~~~-~ad~~~~--~p~~~e~v~~i~~~ 716 (1190)
...++|||+|+|+ +|+ .+++.++.+|. +|++++.+++....... -+|..+. .+...+.+.++...
T Consensus 212 ~~g~~VlV~GaG~--vG~---------~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 212 RPGDNVVILGGGP--IGL---------AAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CTTCEEEEECCSH--HHH---------HHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECCCH--HHH---------HHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999987 444 55888888999 89998877643221111 1232221 11225566666666
Q ss_pred cCCCccccccCCc
Q 001014 717 ERPEGIIVQFGGQ 729 (1190)
Q Consensus 717 ~~~d~Vi~~~g~~ 729 (1190)
.++|.|+-..|+.
T Consensus 281 ~g~D~vid~~g~~ 293 (404)
T 3ip1_A 281 LGAKLFLEATGVP 293 (404)
T ss_dssp CCCSEEEECSSCH
T ss_pred CCCCEEEECCCCc
Confidence 6899999888876
No 423
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=70.20 E-value=7 Score=42.39 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-c---C-cc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-G---L-AD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~---~-ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.- | |+.+++.|.+.|++|++++.+........ . . .. ..+ .+-.+.+.+.+++
T Consensus 31 ~gk~~lVTGas~G-I---------G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 31 SGKRALITGASTG-I---------GKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp TTCEEEEESTTSH-H---------HHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCH-H---------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 4579999998752 2 78899999999999999987654211000 0 0 01 122 3334666666666
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++..-+
T Consensus 101 ~~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAG 118 (276)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 542 7999986554
No 424
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=70.19 E-value=4.1 Score=43.57 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=46.5
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCcceE-EE-CCCCHHHHHHHHH----
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLADRT-YI-TPMTPELVEQVLE---- 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~-~i-~p~~~~~v~~i~~---- 164 (1190)
.|+|||.|++.- | |+.+++.|.+.|++|++++.+....... ....+.. +. +-.+.+.+.++++
T Consensus 2 nK~vlVTGas~G-I---------G~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHG-I---------GKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSH-H---------HHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCH-H---------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 479999998753 2 7899999999999999998764321100 0111222 22 2235555555443
Q ss_pred H-cCCCEEEecCC
Q 001014 165 K-ERPDALLPTMG 176 (1190)
Q Consensus 165 ~-~~~d~Vip~~~ 176 (1190)
+ -++|.++..-+
T Consensus 72 ~~g~iDiLVNNAG 84 (247)
T 3ged_A 72 KLQRIDVLVNNAC 84 (247)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 2 37899986554
No 425
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=70.19 E-value=7.1 Score=41.72 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccC-cc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGL-AD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~-ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|++||+|++.- -|+.+++.|.+.|++|++++.++...... ... .. ..+ .+-.+.+.+.+++
T Consensus 5 ~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 74 (257)
T 3imf_A 5 KEKVVIITGGSSG----------MGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMI 74 (257)
T ss_dssp TTCEEEETTTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3468999998642 27889999999999999998764311000 000 11 122 3334666666665
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++..-+
T Consensus 75 ~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 75 EQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 532 7999987655
No 426
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=70.18 E-value=4.7 Score=42.87 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-c---c-Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-P---G-LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~---~-~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.+....... . . ... ..+ .+-.+.+.+.+++
T Consensus 8 ~~k~vlITGas~g----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T 3qiv_A 8 ENKVGIVTGSGGG----------IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMA 77 (253)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 4579999998742 27899999999999999998764321000 0 0 011 122 3334666666666
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|.++...+
T Consensus 78 ~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 78 DRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 542 7999987654
No 427
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=70.02 E-value=5.6 Score=43.08 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=48.0
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCc-c-eEE-ECCCCHHHHHHHHHHc-
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLA-D-RTY-ITPMTPELVEQVLEKE- 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~a-d-~~~-i~p~~~~~v~~i~~~~- 166 (1190)
+|+|||+|++.. -|+.+++.|.+.|++|++++.+....... .... . ..+ .+-.+.+.+.+++++.
T Consensus 5 ~k~vlVTGas~g----------IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (281)
T 3m1a_A 5 AKVWLVTGASSG----------FGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVL 74 (281)
T ss_dssp CCEEEETTTTSH----------HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHH
Confidence 468999998642 27899999999999999998765321100 0000 1 122 3334666666666543
Q ss_pred ----CCCEEEecCC
Q 001014 167 ----RPDALLPTMG 176 (1190)
Q Consensus 167 ----~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 75 ~~~g~id~lv~~Ag 88 (281)
T 3m1a_A 75 ARYGRVDVLVNNAG 88 (281)
T ss_dssp HHHSCCSEEEECCC
T ss_pred HhCCCCCEEEECCC
Confidence 7999986554
No 428
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=70.02 E-value=3.4 Score=45.52 Aligned_cols=35 Identities=17% Similarity=0.468 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
+++||.|||+|.. |..++..|.+.|++|+++|.++
T Consensus 14 ~~~~I~VIG~G~m-----------G~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 14 IVKHVTVIGGGLM-----------GAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHH-----------HHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999954 7788999999999999997654
No 429
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=70.00 E-value=4.6 Score=47.18 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred CCCCCceeecCHHHHHHHHHHhCCcEEEecCcCCCCcceEE--eCCHHHHHHHHHHhHhhCCCCcEEEEEecCC
Q 001014 784 IEQPKGGIAKSEADALAIAKEIGYPVVVRPSYVLGGRAMEI--VYTDETLVTYLENAVEVDPERPVLIDKYLSD 855 (1190)
Q Consensus 784 Ip~p~~~~~~s~~e~~~~~~~igyPvvvKP~~~~gg~Gv~i--v~~~~el~~~~~~~~~~~~~~~vliEefI~~ 855 (1190)
++..+++.+.+.++...+.+... -+|+||.++.||.||.+ -.+.++.++..+++... ...+++|++++.
T Consensus 341 l~~VpT~~c~~~~~~~~vl~~l~-~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~--p~~yIaQe~v~l 411 (474)
T 3n6x_A 341 LSNVPTYQLSKADDLKYVLDNLA-ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN--PANYIAQPTLAL 411 (474)
T ss_dssp SEECCCEETTSHHHHHHHHHSGG-GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS--GGGEEEEECCCC
T ss_pred ccCCCceecCCHHHHHHHHhchh-heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC--CCCEEEeeccCC
Confidence 44455666777777777776664 79999999999999987 45778888777765542 245999999943
No 430
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Probab=69.99 E-value=3.5 Score=46.38 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=43.0
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCC-----CeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcC
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG-----YETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G-----~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~ 718 (1190)
++|||+|+.+. ||+ ++++.|.+.| ++|++++.++........-......+-.+.+.+.++++..+
T Consensus 2 ~~vlVtGatG~-iG~---------~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 2 SVALIVGVTGI-IGN---------SLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp EEEEEETTTSH-HHH---------HHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred CEEEEECCCcH-HHH---------HHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCC
Confidence 68999998664 555 5599999999 99999988765432100000111112234566666665544
Q ss_pred -CCcccc
Q 001014 719 -PEGIIV 724 (1190)
Q Consensus 719 -~d~Vi~ 724 (1190)
+|.|+-
T Consensus 72 ~~d~vih 78 (364)
T 2v6g_A 72 DVTHVFY 78 (364)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 777763
No 431
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=69.96 E-value=9.8 Score=47.27 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC--------ccCcceEE-ECCCCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD--------PGLADRTY-ITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~--------~~~ad~~~-i~p~~~~~v~~ 161 (1190)
++++|||+|+.. +-|..+++.|.+.|++|++++.++...... ..-. ..+ .+-.+.+.+.+
T Consensus 10 ~~~~ilVTGatG----------~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v-~~v~~Dl~d~~~l~~ 78 (699)
T 1z45_A 10 TSKIVLVTGGAG----------YIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHI-PFYEVDLCDRKGLEK 78 (699)
T ss_dssp -CCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCC-CEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCC----------HHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCce-EEEEcCCCCHHHHHH
Confidence 457999999753 338899999999999999997654321100 0001 122 23346677888
Q ss_pred HHHHcCCCEEEecCC
Q 001014 162 VLEKERPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~~~d~Vip~~~ 176 (1190)
+++..++|+|+-..+
T Consensus 79 ~~~~~~~D~Vih~A~ 93 (699)
T 1z45_A 79 VFKEYKIDSVIHFAG 93 (699)
T ss_dssp HHHHSCCCEEEECCS
T ss_pred HHHhCCCCEEEECCc
Confidence 777668999986554
No 432
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=69.92 E-value=24 Score=37.55 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p 687 (1190)
..++|+|+|.|.. +..+++.|.+.|+. +.++|.+.
T Consensus 27 ~~~~VlvvG~Ggl-----------G~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 27 LDSQVLIIGLGGL-----------GTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp HTCEEEEECCSTT-----------HHHHHHHHHHTTCSEEEEECCCB
T ss_pred hcCcEEEEccCHH-----------HHHHHHHHHHcCCCeEEEEeCCC
Confidence 4579999999994 55679999999984 55666653
No 433
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=69.91 E-value=16 Score=40.30 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=57.3
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEE-ecCCCCCcCccccCCcceeec---CCcHHHHHHHh----
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIM-MNSNPETVSTDYDTSDRLYFE---PLTVEDVLNVI---- 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~-v~~~p~~~s~~~~~ad~~~~~---p~~~e~v~~i~---- 714 (1190)
+.||.|||.|.. +|+ .-+.++++.+.+++. ++.+++... .+ +.+.. -.+++++++.+
T Consensus 3 mirvgiIG~gG~-i~~---------~h~~~l~~~~~~lvav~d~~~~~~~----~~-~~~~~~~~~~~~~~ll~~~~~l~ 67 (312)
T 3o9z_A 3 MTRFALTGLAGY-IAP---------RHLKAIKEVGGVLVASLDPATNVGL----VD-SFFPEAEFFTEPEAFEAYLEDLR 67 (312)
T ss_dssp CCEEEEECTTSS-SHH---------HHHHHHHHTTCEEEEEECSSCCCGG----GG-GTCTTCEEESCHHHHHHHHHHHH
T ss_pred ceEEEEECCChH-HHH---------HHHHHHHhCCCEEEEEEcCCHHHHH----HH-hhCCCCceeCCHHHHHHHhhhhc
Confidence 468999998542 333 347778888888764 455554311 11 11111 13467776554
Q ss_pred -hhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCC
Q 001014 715 -DLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTS 762 (1190)
Q Consensus 715 -~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~ 762 (1190)
...++|+|++......-..++..+- +.| .+++.-.
T Consensus 68 ~~~~~vD~V~I~tP~~~H~~~~~~al----------~aG---khVl~EK 103 (312)
T 3o9z_A 68 DRGEGVDYLSIASPNHLHYPQIRMAL----------RLG---ANALSEK 103 (312)
T ss_dssp HTTCCCSEEEECSCGGGHHHHHHHHH----------HTT---CEEEECS
T ss_pred ccCCCCcEEEECCCchhhHHHHHHHH----------HCC---CeEEEEC
Confidence 5678999998887776666776666 778 7776533
No 434
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=69.82 E-value=2.5 Score=45.16 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=42.7
Q ss_pred cEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhc--CCCc
Q 001014 644 KKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE--RPEG 721 (1190)
Q Consensus 644 ~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~--~~d~ 721 (1190)
|+|||.|++.. ||+. +++.|.+.|++|++++.+++..... +..+-.+.+.+.+++++. ++|.
T Consensus 2 k~vlVTGas~g-IG~~---------~a~~l~~~G~~V~~~~r~~~~~~~~------~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 2 SIIVISGCATG-IGAA---------TRKVLEAAGHQIVGIDIRDAEVIAD------LSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CEEEEETTTSH-HHHH---------HHHHHHHTTCEEEEEESSSSSEECC------TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CEEEEeCCCCH-HHHH---------HHHHHHHCCCEEEEEeCCchhhccc------cccCCCCHHHHHHHHHHhCCCCCE
Confidence 68999998774 6554 4999999999999998876543211 101112245566666554 5677
Q ss_pred ccccc
Q 001014 722 IIVQF 726 (1190)
Q Consensus 722 Vi~~~ 726 (1190)
+|-.-
T Consensus 66 lv~~A 70 (257)
T 1fjh_A 66 LVLCA 70 (257)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76443
No 435
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=69.74 E-value=2.1 Score=45.14 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=30.1
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
.|+|||.|++.. ||+. +++.|.+.|++|++++.+++.
T Consensus 3 ~k~vlITGas~g-IG~~---------~a~~l~~~G~~V~~~~r~~~~ 39 (236)
T 1ooe_A 3 SGKVIVYGGKGA-LGSA---------ILEFFKKNGYTVLNIDLSAND 39 (236)
T ss_dssp CEEEEEETTTSH-HHHH---------HHHHHHHTTEEEEEEESSCCT
T ss_pred CCEEEEECCCcH-HHHH---------HHHHHHHCCCEEEEEecCccc
Confidence 578999998774 6554 499999999999999887654
No 436
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=69.74 E-value=3.1 Score=44.00 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=46.8
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC--cceEE-ECCCCHHHHHHHHHHc-
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL--ADRTY-ITPMTPELVEQVLEKE- 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~--ad~~~-i~p~~~~~v~~i~~~~- 166 (1190)
+|+|||+|++.- -|+.+++.|.+.|++|++++.+....... ... .-..+ .+-.+.+.+.+++++.
T Consensus 3 ~k~vlVTGas~G----------IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 3 LGHIIVTGAGSG----------LGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp CCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHH
Confidence 468999998753 27899999999999999998764321100 000 01122 2333566666655532
Q ss_pred ----CCCEEEecCC
Q 001014 167 ----RPDALLPTMG 176 (1190)
Q Consensus 167 ----~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 73 ~~~g~id~lvnnAg 86 (235)
T 3l6e_A 73 EWGGLPELVLHCAG 86 (235)
T ss_dssp HHHCSCSEEEEECC
T ss_pred HhcCCCcEEEECCC
Confidence 7899986655
No 437
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=69.72 E-value=4.6 Score=44.82 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|+.....++|||+|+.. +-|..+++.|.+.|++|++++.++
T Consensus 5 ~~~~~~~~~vlVTGatG----------~iG~~l~~~L~~~g~~V~~~~r~~ 45 (342)
T 1y1p_A 5 NAVLPEGSLVLVTGANG----------FVASHVVEQLLEHGYKVRGTARSA 45 (342)
T ss_dssp TCSSCTTCEEEEETTTS----------HHHHHHHHHHHHTTCEEEEEESSH
T ss_pred cccCCCCCEEEEECCcc----------HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34444567999999843 338899999999999999987653
No 438
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=69.71 E-value=5.2 Score=42.63 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHHHHHHHc-C
Q 001014 89 RTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVEQVLEKE-R 167 (1190)
Q Consensus 89 ~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~~~~-~ 167 (1190)
....|+|||+|++.. -|+.+++.|.+.|++|++++.++.... ......++..+ .+.+.++++.. +
T Consensus 16 ~~~~k~vlVTGas~g----------IG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~D~-~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 16 GIRDKGVLVLAASRG----------IGRAVADVLSQEGAEVTICARNEELLK---RSGHRYVVCDL-RKDLDLLFEKVKE 81 (249)
T ss_dssp CCTTCEEEEESCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHH---HTCSEEEECCT-TTCHHHHHHHSCC
T ss_pred ccCCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEcCCHHHHH---hhCCeEEEeeH-HHHHHHHHHHhcC
Confidence 345679999998742 278999999999999999987652110 11112222222 23445555544 7
Q ss_pred CCEEEecCC
Q 001014 168 PDALLPTMG 176 (1190)
Q Consensus 168 ~d~Vip~~~ 176 (1190)
+|+++...+
T Consensus 82 iD~lv~~Ag 90 (249)
T 1o5i_A 82 VDILVLNAG 90 (249)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999987654
No 439
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=69.68 E-value=3.5 Score=46.11 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC--CeEEEecCCCCCcCccc--cC--Cccee---ecCCcHHHHH
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG--YETIMMNSNPETVSTDY--DT--SDRLY---FEPLTVEDVL 711 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G--~~vi~v~~~p~~~s~~~--~~--ad~~~---~~p~~~e~v~ 711 (1190)
...++|||+|+.+. ||+ ++++.|.+.| ++++.++..+....... .. ...+. .+-.+.+.+.
T Consensus 22 ~~~~~vlVtGatG~-iG~---------~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~ 91 (346)
T 4egb_A 22 SNAMNILVTGGAGF-IGS---------NFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLE 91 (346)
T ss_dssp --CEEEEEETTTSH-HHH---------HHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHH
T ss_pred cCCCeEEEECCccH-HHH---------HHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHH
Confidence 45679999999664 555 5599999999 88888876542221110 00 01111 1223467777
Q ss_pred HHhhhcCCCcccc
Q 001014 712 NVIDLERPEGIIV 724 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~ 724 (1190)
++++..++|.||-
T Consensus 92 ~~~~~~~~d~Vih 104 (346)
T 4egb_A 92 HVIKERDVQVIVN 104 (346)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHhhcCCCEEEE
Confidence 7777777887774
No 440
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=69.63 E-value=2.8 Score=45.61 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=42.3
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCC
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP 719 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~ 719 (1190)
+...++|||+|+.+. ||+ ++++.|.+.|++|++++.+. .|+ .+.+.+.++++..++
T Consensus 9 ~~~~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~------~Dl--------~d~~~~~~~~~~~~~ 64 (292)
T 1vl0_A 9 HHHHMKILITGANGQ-LGR---------EIQKQLKGKNVEVIPTDVQD------LDI--------TNVLAVNKFFNEKKP 64 (292)
T ss_dssp ---CEEEEEESTTSH-HHH---------HHHHHHTTSSEEEEEECTTT------CCT--------TCHHHHHHHHHHHCC
T ss_pred ccccceEEEECCCCh-HHH---------HHHHHHHhCCCeEEeccCcc------CCC--------CCHHHHHHHHHhcCC
Confidence 456789999998775 555 55999999999999987642 112 235566666665578
Q ss_pred Ccccccc
Q 001014 720 EGIIVQF 726 (1190)
Q Consensus 720 d~Vi~~~ 726 (1190)
|.||-.-
T Consensus 65 d~vih~A 71 (292)
T 1vl0_A 65 NVVINCA 71 (292)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 8887443
No 441
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=69.63 E-value=2.4 Score=42.40 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=57.1
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.++|++ |++.+|-+.+|-
T Consensus 23 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~d--v~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp 91 (182)
T 1u11_A 23 VVGIIMGSQSDWETMRHADALLTELEIPHE--TLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP 91 (182)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCeE--EEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 467788889999988887777778888866 66778999999999999999988998 888888887774
No 442
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=69.58 E-value=11 Score=41.78 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEe-cCCCCCcCccccCCcceeec---CCcHHHHHHHh----
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMM-NSNPETVSTDYDTSDRLYFE---PLTVEDVLNVI---- 714 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v-~~~p~~~s~~~~~ad~~~~~---p~~~e~v~~i~---- 714 (1190)
+.||.|||.|.. +|+ .-+.++++.|.+++.+ +.+++... .+. .+.. ..+++++++..
T Consensus 3 mirvgiIG~gG~-i~~---------~h~~~l~~~~~~lvav~d~~~~~~~----~~~-~~~~~~~~~~~~~ll~~~~~l~ 67 (318)
T 3oa2_A 3 MKNFALIGAAGY-IAP---------RHMRAIKDTGNCLVSAYDINDSVGI----IDS-ISPQSEFFTEFEFFLDHASNLK 67 (318)
T ss_dssp CCEEEEETTTSS-SHH---------HHHHHHHHTTCEEEEEECSSCCCGG----GGG-TCTTCEEESSHHHHHHHHHHHT
T ss_pred ceEEEEECCCcH-HHH---------HHHHHHHhCCCEEEEEEcCCHHHHH----HHh-hCCCCcEECCHHHHHHhhhhhh
Confidence 568999999542 333 3477788888887654 55554311 111 1111 13466666543
Q ss_pred --hhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCCHHHHhhccCHHHHHHHHHHcCCCC
Q 001014 715 --DLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTSPDSIDAAEDRERFNAIIKELSIEQ 786 (1190)
Q Consensus 715 --~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~~~~i~~~~DK~~~~~~l~~~gIp~ 786 (1190)
...++|+|++......-..++..+- +.| .+++.-.|-+....+ =..+.++.++.|+..
T Consensus 68 ~~~~~~vD~V~I~tP~~~H~~~~~~al----------~aG---khVl~EKPla~~~~e-a~~l~~~a~~~g~~~ 127 (318)
T 3oa2_A 68 RDSATALDYVSICSPNYLHYPHIAAGL----------RLG---CDVICEKPLVPTPEM-LDQLAVIERETDKRL 127 (318)
T ss_dssp TSTTTSCCEEEECSCGGGHHHHHHHHH----------HTT---CEEEECSSCCSCHHH-HHHHHHHHHHHTCCE
T ss_pred hccCCCCcEEEECCCcHHHHHHHHHHH----------HCC---CeEEEECCCcCCHHH-HHHHHHHHHHhCCEE
Confidence 3567999998887776666666666 778 777654433322211 223334455566543
No 443
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=69.52 E-value=4.8 Score=44.32 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccCcc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PGLAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.+....... ..-.+ ..+ .+-.+.+.+.+++
T Consensus 30 ~gk~vlVTGas~g----------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 99 (301)
T 3tjr_A 30 DGRAAVVTGGASG----------IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLA 99 (301)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 4579999998742 27899999999999999998764321000 00011 112 3334566666555
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++..-+
T Consensus 100 ~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 100 DEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHHHSSCSEEEECCC
T ss_pred HHHHHhCCCCCEEEECCC
Confidence 532 7888886554
No 444
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=69.43 E-value=3 Score=49.49 Aligned_cols=34 Identities=24% Similarity=0.553 Sum_probs=29.4
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
||+|+|||+| .+|..++..|.+.|++|.++..++
T Consensus 1 Mk~VvVIGaG-----------~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAG-----------FGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCH-----------HHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCCEEEECCc-----------HHHHHHHHHHHHCCCcEEEEccCC
Confidence 4789999999 458899999999999999998654
No 445
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=69.42 E-value=3.2 Score=44.37 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEcc-CCCCCCC-Ccc----Ccc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINS-NPATIMT-DPG----LAD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~-~~~~~~~-~~~----~ad-~~~-i~p~~~~~v~~i 162 (1190)
..++|||+|+... -|+.+++.|.+.|++|++++. ++..... ... -.. ..+ .+-.+.+.+.++
T Consensus 6 ~~k~vlITGasgg----------iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 75 (261)
T 1gee_A 6 EGKVVVITGSSTG----------LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINL 75 (261)
T ss_dssp TTCEEEETTCSSH----------HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 3578999997742 278999999999999999876 4321000 000 011 122 233356666665
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|+++...+
T Consensus 76 ~~~~~~~~g~id~li~~Ag 94 (261)
T 1gee_A 76 VQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 5532 7899986654
No 446
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=69.35 E-value=24 Score=38.02 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.+.
T Consensus 9 ~gk~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~~~~ 44 (287)
T 3pxx_A 9 QDKVVLVTGGARG----------QGRSHAVKLAEEGADIILFDICH 44 (287)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEeCCCCh----------HHHHHHHHHHHCCCeEEEEcccc
Confidence 4579999998752 27899999999999999998653
No 447
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=69.32 E-value=4.3 Score=43.55 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCC--ccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccCc-ceEE-ECCCCHHHHHH
Q 001014 90 TDLRKILILGAG--PIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGLA-DRTY-ITPMTPELVEQ 161 (1190)
Q Consensus 90 ~~~~kVLIiG~G--~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~a-d~~~-i~p~~~~~v~~ 161 (1190)
...|+|||+|++ .. | |+.+++.|.+.|++|++++.+....... .... -..+ .+-.+.+.+.+
T Consensus 12 ~~~k~vlITGa~~~~g-i---------G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 81 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRS-I---------AYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDA 81 (271)
T ss_dssp TTTCEEEECCCCSTTS-H---------HHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred cCCCEEEEeCCCCCCc-H---------HHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 456799999974 21 2 7899999999999999997653110000 0000 0122 33345666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|+++...+
T Consensus 82 ~~~~~~~~~g~id~lv~nAg 101 (271)
T 3ek2_A 82 LFASLKTHWDSLDGLVHSIG 101 (271)
T ss_dssp HHHHHHHHCSCEEEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCc
Confidence 55532 6788886554
No 448
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=69.32 E-value=11 Score=41.57 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC-CCcCcc---------ccCCcceeecCCcHHHHH
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP-ETVSTD---------YDTSDRLYFEPLTVEDVL 711 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p-~~~s~~---------~~~ad~~~~~p~~~e~v~ 711 (1190)
.+++|+|+|+.+. +|+ ++++.|.+.|++|++++.++ ...... ..-..-+..+-.+.+.+.
T Consensus 3 ~~~~ilVtGatG~-iG~---------~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~ 72 (321)
T 3c1o_A 3 HMEKIIIYGGTGY-IGK---------FMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMV 72 (321)
T ss_dssp -CCCEEEETTTST-THH---------HHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHH
T ss_pred cccEEEEEcCCch-hHH---------HHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHH
Confidence 3578999998553 555 55999999999999998876 210000 000111111223466677
Q ss_pred HHhhhcCCCccccccC
Q 001014 712 NVIDLERPEGIIVQFG 727 (1190)
Q Consensus 712 ~i~~~~~~d~Vi~~~g 727 (1190)
+.++ ++|.|+...+
T Consensus 73 ~a~~--~~d~vi~~a~ 86 (321)
T 3c1o_A 73 SVLK--QVDIVISALP 86 (321)
T ss_dssp HHHT--TCSEEEECCC
T ss_pred HHHc--CCCEEEECCC
Confidence 6664 4788876554
No 449
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=69.29 E-value=2 Score=45.83 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=29.0
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.|+|||.|++.. ||+. +++.|.+.|++|++++.+++
T Consensus 2 ~k~vlVTGas~g-IG~~---------ia~~l~~~G~~V~~~~r~~~ 37 (247)
T 3dii_A 2 NRGVIVTGGGHG-IGKQ---------ICLDFLEAGDKVCFIDIDEK 37 (247)
T ss_dssp CCEEEEESTTSH-HHHH---------HHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEECCCCH-HHHH---------HHHHHHHCCCEEEEEeCCHH
Confidence 478999998874 6554 49999999999999987743
No 450
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=69.05 E-value=2.4 Score=47.06 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNP 687 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p 687 (1190)
..++|+|||+|+- +..++..|++.|++|.+++.++
T Consensus 21 ~~~~vvIIG~G~a-----------Gl~aA~~l~~~g~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPA-----------AHTAAIYLARAEIKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHH-----------HHHHHHHHHHTTCCCEEECCSS
T ss_pred CCCCEEEECcCHH-----------HHHHHHHHHHCCCCEEEEecCC
Confidence 4578999999994 7788999999999999999865
No 451
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=69.01 E-value=3.1 Score=44.79 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cCcceEE-ECCCCHHHHHHHHHH---
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GLADRTY-ITPMTPELVEQVLEK--- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~-i~p~~~~~v~~i~~~--- 165 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++....... ...-..+ .+-.+.+.+.+++++
T Consensus 26 ~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 26 SSAPILITGASQR----------VGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp -CCCEEESSTTSH----------HHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHH
Confidence 3468999998742 278999999999999999987654210000 0001222 333456666665553
Q ss_pred --cCCCEEEecCC
Q 001014 166 --ERPDALLPTMG 176 (1190)
Q Consensus 166 --~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 96 ~~g~iD~lv~nAg 108 (260)
T 3gem_A 96 QTSSLRAVVHNAS 108 (260)
T ss_dssp HCSCCSEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 27899986654
No 452
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=68.97 E-value=2.4 Score=45.91 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=30.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
..+|+|||.|++.. ||+. +++.|.+.|++|++++.+++
T Consensus 14 ~~~k~vlVTGas~g-IG~a---------ia~~l~~~G~~V~~~~r~~~ 51 (266)
T 3p19_A 14 SMKKLVVITGASSG-IGEA---------IARRFSEEGHPLLLLARRVE 51 (266)
T ss_dssp -CCCEEEEESTTSH-HHHH---------HHHHHHHTTCCEEEEESCHH
T ss_pred CCCCEEEEECCCCH-HHHH---------HHHHHHHCCCEEEEEECCHH
Confidence 35689999998874 6554 49999999999999988744
No 453
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=68.96 E-value=4.6 Score=43.86 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccCcceEEECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGLADRTYITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~~i~p~~~~~v~~i~~~~ 166 (1190)
..|+|||+|++.- | |+.+++.|.+.|++|++++.++...... ..-......+-.+.+.+.+++++.
T Consensus 28 ~gk~vlVTGas~g-I---------G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 28 AGKVAIVTGAGAG-I---------GLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp TTCEEEETTTTST-H---------HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-H---------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHH
Confidence 4578999998743 2 7889999999999999998664311000 000111123334666666655532
Q ss_pred -----CCCEEEecCC
Q 001014 167 -----RPDALLPTMG 176 (1190)
Q Consensus 167 -----~~d~Vip~~~ 176 (1190)
++|+++..-+
T Consensus 98 ~~~~g~iD~lvnnAg 112 (277)
T 3gvc_A 98 VAAFGGVDKLVANAG 112 (277)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 7999986654
No 454
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=68.93 E-value=5.6 Score=42.74 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc------Ccc-eEE-ECCCCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG------LAD-RTY-ITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~------~ad-~~~-i~p~~~~~v~~ 161 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.+
T Consensus 12 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 81 (267)
T 1iy8_A 12 TDRVVLITGGGSG----------LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEA 81 (267)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHH
T ss_pred CCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHH
Confidence 3578999998742 27899999999999999998664311000 00 011 112 23335666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|+++..-+
T Consensus 82 ~~~~~~~~~g~id~lv~nAg 101 (267)
T 1iy8_A 82 YVTATTERFGRIDGFFNNAG 101 (267)
T ss_dssp HHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 55532 7899986654
No 455
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=68.84 E-value=1.7 Score=46.81 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=30.1
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...|+|||.|++.. ||+ .+++.|.+.|++|++++.+++.
T Consensus 25 l~~k~vlVTGas~g-IG~---------aia~~l~~~G~~V~~~~r~~~~ 63 (260)
T 3gem_A 25 LSSAPILITGASQR-VGL---------HCALRLLEHGHRVIISYRTEHA 63 (260)
T ss_dssp --CCCEEESSTTSH-HHH---------HHHHHHHHTTCCEEEEESSCCH
T ss_pred CCCCEEEEECCCCH-HHH---------HHHHHHHHCCCEEEEEeCChHH
Confidence 45688999998764 555 4499999999999999887653
No 456
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=68.80 E-value=2.3 Score=46.16 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=41.0
Q ss_pred Cc-EEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhcCCCc
Q 001014 643 KK-KVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPEG 721 (1190)
Q Consensus 643 ~~-kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~~~d~ 721 (1190)
++ +|||+|+.+. ||+ ++++.|.+.|++|++++..+ .|+ .+.+.+.++++..++|.
T Consensus 4 M~m~ilVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~------~D~--------~d~~~~~~~~~~~~~d~ 59 (287)
T 3sc6_A 4 MKERVIITGANGQ-LGK---------QLQEELNPEEYDIYPFDKKL------LDI--------TNISQVQQVVQEIRPHI 59 (287)
T ss_dssp -CEEEEEESTTSH-HHH---------HHHHHSCTTTEEEEEECTTT------SCT--------TCHHHHHHHHHHHCCSE
T ss_pred ceeEEEEECCCCH-HHH---------HHHHHHHhCCCEEEEecccc------cCC--------CCHHHHHHHHHhcCCCE
Confidence 45 8999998654 555 55999999999999997622 111 24567777777668888
Q ss_pred ccc
Q 001014 722 IIV 724 (1190)
Q Consensus 722 Vi~ 724 (1190)
||-
T Consensus 60 vi~ 62 (287)
T 3sc6_A 60 IIH 62 (287)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 457
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=68.76 E-value=5.3 Score=42.78 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc------Ccc-eEE-ECCCCHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG------LAD-RTY-ITPMTPELVEQ 161 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~------~ad-~~~-i~p~~~~~v~~ 161 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.+
T Consensus 6 ~~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 6 QGKLAVVTAGSSG----------LGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHH
Confidence 3578999998742 27899999999999999998764311000 00 001 122 23335666555
Q ss_pred HHH----HcCCCEEEecCC
Q 001014 162 VLE----KERPDALLPTMG 176 (1190)
Q Consensus 162 i~~----~~~~d~Vip~~~ 176 (1190)
+++ +.++|+++...+
T Consensus 76 ~~~~~~~~~gid~lv~~Ag 94 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTG 94 (260)
T ss_dssp HHHHHHHTTCCSEEEECCC
T ss_pred HHHHHHHhcCCCEEEECCC
Confidence 554 335999987654
No 458
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=68.75 E-value=3.9 Score=43.80 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccC-cc-eEE-ECCCCHHHHHHHHHH-
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGL-AD-RTY-ITPMTPELVEQVLEK- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~-ad-~~~-i~p~~~~~v~~i~~~- 165 (1190)
..|++||+|++.- -|+.+++.|.+.|++|++++.++...... ... .. ..+ .+-.+.+.+.++++.
T Consensus 7 ~gk~~lVTGas~g----------IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 7 QGKKAIVIGGTHG----------MGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp TTCEEEEETCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHH
Confidence 4579999998753 27899999999999999998764321000 000 01 112 233456666555543
Q ss_pred ----cCCCEEEecCC
Q 001014 166 ----ERPDALLPTMG 176 (1190)
Q Consensus 166 ----~~~d~Vip~~~ 176 (1190)
.++|.++..-+
T Consensus 77 ~~~~g~id~lv~nAg 91 (255)
T 4eso_A 77 GQTLGAIDLLHINAG 91 (255)
T ss_dssp HHHHSSEEEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 26888876544
No 459
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=68.71 E-value=17 Score=39.55 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-----ccC-cc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-----PGL-AD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-----~~~-ad-~~~-i~p~~~~~v~~i 162 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.+....... ... .. ..+ .+-.+.+.+.++
T Consensus 46 ~gk~vlVTGas~G----------IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 115 (291)
T 3ijr_A 46 KGKNVLITGGDSG----------IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDI 115 (291)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 4579999998753 27899999999999999997664310000 000 11 112 233356666655
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|.++..-+
T Consensus 116 ~~~~~~~~g~iD~lvnnAg 134 (291)
T 3ijr_A 116 VQETVRQLGSLNILVNNVA 134 (291)
T ss_dssp HHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 5432 7898886544
No 460
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=68.60 E-value=2.9 Score=44.14 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=29.6
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCC--CeEEEecCCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAG--YETIMMNSNPET 689 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G--~~vi~v~~~p~~ 689 (1190)
.++|+|+|++.. ||+ ++++.|.+.| ++|++++.+++.
T Consensus 3 ~k~vlItGasgg-iG~---------~la~~l~~~g~~~~V~~~~r~~~~ 41 (250)
T 1yo6_A 3 PGSVVVTGANRG-IGL---------GLVQQLVKDKNIRHIIATARDVEK 41 (250)
T ss_dssp CSEEEESSCSSH-HHH---------HHHHHHHTCTTCCEEEEEESSGGG
T ss_pred CCEEEEecCCch-HHH---------HHHHHHHhcCCCcEEEEEecCHHH
Confidence 578999998774 555 4599999999 999999887543
No 461
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=68.59 E-value=2.3 Score=42.08 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=57.0
Q ss_pred cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1013 TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1013 ~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
++-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.++|++ |+|.+|-+.+|-
T Consensus 14 V~IimGS~SD~~v~~~a~~~L~~~Gi~~d--v~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp 81 (170)
T 1xmp_A 14 VGVIMGSTSDWETMKYACDILDELNIPYE--KKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP 81 (170)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEE--EEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH
T ss_pred EEEEECcHHHHHHHHHHHHHHHHcCCCEE--EEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH
Confidence 67789999999988887777778888866 66778899999999999999888998 888888877774
No 462
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=68.56 E-value=19 Score=39.70 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=62.3
Q ss_pred CCEEEEEcC-CccccccccccchHHHHHHHHHHHCCCeEEEEc-cCCCCCCCCccCcceEEECCCCHHHHHHHH-----H
Q 001014 92 LRKILILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVILIN-SNPATIMTDPGLADRTYITPMTPELVEQVL-----E 164 (1190)
Q Consensus 92 ~~kVLIiG~-G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~-~~~~~~~~~~~~ad~~~i~p~~~~~v~~i~-----~ 164 (1190)
+.||+|||. |.+ |...++++++.+.+++.+. .++........+....+. .+.+.+.+.+ .
T Consensus 3 mirvgiIG~gG~i-----------~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~l~~~ 69 (312)
T 3o9z_A 3 MTRFALTGLAGYI-----------APRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFF--TEPEAFEAYLEDLRDR 69 (312)
T ss_dssp CCEEEEECTTSSS-----------HHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEE--SCHHHHHHHHHHHHHT
T ss_pred ceEEEEECCChHH-----------HHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcee--CCHHHHHHHhhhhccc
Confidence 359999998 433 5667888888899888664 444321000111111111 1445555444 4
Q ss_pred HcCCCEEEecCCChhHHHHHHHHHHhhHHHHcCCcEeCCcHHHHHHHhcHHHHHHHHHHcCCCC
Q 001014 165 KERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLDAIKKAEDRDLFKQAMKTIGVKT 228 (1190)
Q Consensus 165 ~~~~d~Vip~~~g~~~~~~~~~l~~~~~le~~gi~~~G~~~~~i~~~~DK~~~k~~l~~~Gipv 228 (1190)
..++|+|+.+.........+.. +-+.|.+++.-.|-+... .+=..+.+++++.|+..
T Consensus 70 ~~~vD~V~I~tP~~~H~~~~~~------al~aGkhVl~EKPla~~~-~ea~~l~~~a~~~g~~~ 126 (312)
T 3o9z_A 70 GEGVDYLSIASPNHLHYPQIRM------ALRLGANALSEKPLVLWP-EEIARLKELEARTGRRV 126 (312)
T ss_dssp TCCCSEEEECSCGGGHHHHHHH------HHHTTCEEEECSSSCSCH-HHHHHHHHHHHHHCCCE
T ss_pred CCCCcEEEECCCchhhHHHHHH------HHHCCCeEEEECCCCCCH-HHHHHHHHHHHHcCCEE
Confidence 5689999988776555555542 223566665322211111 11122344666777654
No 463
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=68.54 E-value=5.8 Score=46.65 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=44.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhC-CCeEEEecCCCCCcCccccC--CcceeecCCcHHHHHHHhhhcC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSA-GYETIMMNSNPETVSTDYDT--SDRLYFEPLTVEDVLNVIDLER 718 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~-G~~vi~v~~~p~~~s~~~~~--ad~~~~~p~~~e~v~~i~~~~~ 718 (1190)
..++|+|+|+|. + +..++++|.+. |+++.+++.+++....-... ......+-.+.+++.+.++ +
T Consensus 22 ~~k~VlIiGAGg--i---------G~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~--~ 88 (467)
T 2axq_A 22 MGKNVLLLGSGF--V---------AQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA--D 88 (467)
T ss_dssp -CEEEEEECCST--T---------HHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH--T
T ss_pred CCCEEEEECChH--H---------HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc--C
Confidence 467999999987 4 44558889888 89998888875432110000 0000111223455555553 6
Q ss_pred CCccccccCCc
Q 001014 719 PEGIIVQFGGQ 729 (1190)
Q Consensus 719 ~d~Vi~~~g~~ 729 (1190)
+|.||...+..
T Consensus 89 ~DvVIn~tp~~ 99 (467)
T 2axq_A 89 NDVVISLIPYT 99 (467)
T ss_dssp SSEEEECSCGG
T ss_pred CCEEEECCchh
Confidence 88888766644
No 464
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=68.48 E-value=2.4 Score=44.31 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=41.5
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCcHHHHHHHhhhc-CCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE-RPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~~e~v~~i~~~~-~~d 720 (1190)
..|++||.|++.. ||+. +++.|.+.|++|++++.++. .|+. +.+.+.+++++. ++|
T Consensus 5 ~~k~vlVTGas~g-IG~~---------~a~~l~~~G~~V~~~~r~~~-----~D~~--------~~~~v~~~~~~~g~id 61 (223)
T 3uce_A 5 DKTVYVVLGGTSG-IGAE---------LAKQLESEHTIVHVASRQTG-----LDIS--------DEKSVYHYFETIGAFD 61 (223)
T ss_dssp CCEEEEEETTTSH-HHHH---------HHHHHCSTTEEEEEESGGGT-----CCTT--------CHHHHHHHHHHHCSEE
T ss_pred CCCEEEEECCCCH-HHHH---------HHHHHHHCCCEEEEecCCcc-----cCCC--------CHHHHHHHHHHhCCCC
Confidence 5688999998774 6554 49999999999999987654 2222 345555555543 567
Q ss_pred ccccc
Q 001014 721 GIIVQ 725 (1190)
Q Consensus 721 ~Vi~~ 725 (1190)
.+|..
T Consensus 62 ~lv~n 66 (223)
T 3uce_A 62 HLIVT 66 (223)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66643
No 465
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=68.45 E-value=5.3 Score=42.23 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..|+|+|+|++.. -|+.+++.|.+.|++|++++.++
T Consensus 13 ~~k~vlITGas~g----------IG~~ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 13 KGRVILVTGAARG----------IGAAAARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TTCEEEESSTTSH----------HHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCCh----------HHHHHHHHHHHCCCEEEEEecCH
Confidence 4578999998742 27889999999999999998764
No 466
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=68.39 E-value=7.3 Score=41.22 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcc-eEE-ECCCCHHHHHHHHHHc-CC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD-RTY-ITPMTPELVEQVLEKE-RP 168 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~-i~p~~~~~v~~i~~~~-~~ 168 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++........... ..+ .+-.+.+.+.++.++. ++
T Consensus 6 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 6 GKVIILTAAAQG----------IGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TCEEEESSTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCEEEEeCCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 468999998642 2789999999999999999876432110001111 122 3334667777766654 78
Q ss_pred CEEEecCC
Q 001014 169 DALLPTMG 176 (1190)
Q Consensus 169 d~Vip~~~ 176 (1190)
|.++...+
T Consensus 76 d~lv~~Ag 83 (246)
T 2ag5_A 76 DVLFNVAG 83 (246)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99986554
No 467
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=68.28 E-value=4.2 Score=43.50 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcc--eEE-ECCCCHHHHHHHHHH--
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGLAD--RTY-ITPMTPELVEQVLEK-- 165 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~-i~p~~~~~v~~i~~~-- 165 (1190)
..|++||+|++.- -|+.+++.|.+.|++|++++.+..... ..... ..+ .+-.+.+.+.++++.
T Consensus 8 ~~k~vlVTGas~g----------IG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 8 RDAVAVVTGGASG----------LGLATTKRLLDAGAQVVVLDIRGEDVV--ADLGDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp --CEEEEETTTSH----------HHHHHHHHHHHHTCEEEEEESSCHHHH--HHTCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCH----------HHHHHHHHHHHCCCEEEEEeCchHHHH--HhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3578999998742 278899999999999999976432110 01111 122 333456666555543
Q ss_pred --cCCCEEEecCC
Q 001014 166 --ERPDALLPTMG 176 (1190)
Q Consensus 166 --~~~d~Vip~~~ 176 (1190)
.++|+++..-+
T Consensus 76 ~~g~id~lv~nAg 88 (257)
T 3tl3_A 76 TMGTLRIVVNCAG 88 (257)
T ss_dssp HHSCEEEEEECGG
T ss_pred HhCCCCEEEECCC
Confidence 27899887655
No 468
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=68.25 E-value=7 Score=44.42 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=42.4
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCccee-ecCCcHHHHHHHhhhcCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLY-FEPLTVEDVLNVIDLERPE 720 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~-~~p~~~e~v~~i~~~~~~d 720 (1190)
..++|||+|+... ||+ ++++.|.+.|++|++++.++..........-..+ .+-.+.+.+.++++ ++|
T Consensus 28 ~~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d 95 (379)
T 2c5a_A 28 ENLKISITGAGGF-IAS---------HIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVD 95 (379)
T ss_dssp SCCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCS
T ss_pred cCCeEEEECCccH-HHH---------HHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCC
Confidence 4579999999664 554 5599999999999999887644221100000111 12233555655553 577
Q ss_pred cccc
Q 001014 721 GIIV 724 (1190)
Q Consensus 721 ~Vi~ 724 (1190)
.||-
T Consensus 96 ~Vih 99 (379)
T 2c5a_A 96 HVFN 99 (379)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 469
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=68.02 E-value=3.4 Score=46.95 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCc-cC-cceEEECCCCHHHHHHHHHHcCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDP-GL-ADRTYITPMTPELVEQVLEKERP 168 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~-~~-ad~~~i~p~~~~~v~~i~~~~~~ 168 (1190)
...+|||+|+|++ |..+++.++..|.+|++++.++....... .+ +|.. +...+.+.+.++. .++
T Consensus 187 ~g~~VlV~GaG~v-----------G~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~~~~~--~~~ 252 (366)
T 1yqd_A 187 PGKHIGIVGLGGL-----------GHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSF-LVSRDQEQMQAAA--GTL 252 (366)
T ss_dssp TTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEE-EETTCHHHHHHTT--TCE
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceE-EeccCHHHHHHhh--CCC
Confidence 4569999999875 77889999999999999887654321101 11 3333 3333444444433 378
Q ss_pred CEEEecCCChh
Q 001014 169 DALLPTMGGQT 179 (1190)
Q Consensus 169 d~Vip~~~g~~ 179 (1190)
|+|+-+.++..
T Consensus 253 D~vid~~g~~~ 263 (366)
T 1yqd_A 253 DGIIDTVSAVH 263 (366)
T ss_dssp EEEEECCSSCC
T ss_pred CEEEECCCcHH
Confidence 99998887653
No 470
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=67.91 E-value=6.1 Score=42.25 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc----Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG----LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~----~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.+ ..+ .+-.+.+.+.+++
T Consensus 8 ~~k~vlVTGas~g----------iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (260)
T 2ae2_A 8 EGCTALVTGGSRG----------IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELM 77 (260)
T ss_dssp TTCEEEEESCSSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 3578999998742 27899999999999999998664311000 00 011 112 2333556665555
Q ss_pred HH------cCCCEEEecCC
Q 001014 164 EK------ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~------~~~d~Vip~~~ 176 (1190)
++ .++|+++..-+
T Consensus 78 ~~~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 78 NTVANHFHGKLNILVNNAG 96 (260)
T ss_dssp HHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHcCCCCCEEEECCC
Confidence 43 47999986654
No 471
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=67.85 E-value=4.2 Score=45.27 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..++|||+|++.. -|..+++.|.+.|++|++++.++
T Consensus 7 ~~k~vlVTGas~g----------IG~~la~~l~~~G~~Vv~~~r~~ 42 (319)
T 3ioy_A 7 AGRTAFVTGGANG----------VGIGLVRQLLNQGCKVAIADIRQ 42 (319)
T ss_dssp TTCEEEEETTTST----------HHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEcCCchH----------HHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999998743 27899999999999999998764
No 472
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=67.82 E-value=5.6 Score=43.27 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC----ccCcceE-E--ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD----PGLADRT-Y--ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~-~--i~p~~~~~v~~i~ 163 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.++...... ....... + .+-.+.+.+.+++
T Consensus 7 ~gk~vlVTGas~G----------IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 76 (280)
T 3tox_A 7 EGKIAIVTGASSG----------IGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALV 76 (280)
T ss_dssp TTCEEEESSTTSH----------HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 4578999998742 27889999999999999987664311000 0001112 1 2223556665555
Q ss_pred HH-----cCCCEEEecCC
Q 001014 164 EK-----ERPDALLPTMG 176 (1190)
Q Consensus 164 ~~-----~~~d~Vip~~~ 176 (1190)
+. .++|+++..-+
T Consensus 77 ~~~~~~~g~iD~lvnnAg 94 (280)
T 3tox_A 77 ELAVRRFGGLDTAFNNAG 94 (280)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 43 27899886654
No 473
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=67.74 E-value=24 Score=38.03 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSN 135 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~ 135 (1190)
..|++||+|++.- -|+.+++.|.+.|++|++++.+
T Consensus 14 ~gk~~lVTGas~g----------IG~a~a~~la~~G~~V~~~~r~ 48 (280)
T 3pgx_A 14 QGRVAFITGAARG----------QGRSHAVRLAAEGADIIACDIC 48 (280)
T ss_dssp TTCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEecc
Confidence 4579999998752 2789999999999999999764
No 474
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=67.56 E-value=9.2 Score=42.80 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeE-EEecCCCCCcCccccC-Ccceee-cCCcH-HHHHHHhh
Q 001014 640 PTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYET-IMMNSNPETVSTDYDT-SDRLYF-EPLTV-EDVLNVID 715 (1190)
Q Consensus 640 ~~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~v-i~v~~~p~~~s~~~~~-ad~~~~-~p~~~-e~v~~i~~ 715 (1190)
....++|||.|+|+ + +..+++.++.+|.++ ++++.+++.......+ +|..+. ...+. +.+..+..
T Consensus 158 ~~~g~~VlV~GaG~--v---------G~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~ 226 (346)
T 4a2c_A 158 GCENKNVIIIGAGT--I---------GLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRE 226 (346)
T ss_dssp CCTTSEEEEECCSH--H---------HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGG
T ss_pred cCCCCEEEEECCCC--c---------chHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcc
Confidence 34678999999998 3 445588889999876 5666665432211111 232221 12233 33444444
Q ss_pred hcCCCccccccCCchhhhhh
Q 001014 716 LERPEGIIVQFGGQTPLKLS 735 (1190)
Q Consensus 716 ~~~~d~Vi~~~g~~~~~~la 735 (1190)
....|.|+-..|....++.+
T Consensus 227 ~~g~d~v~d~~G~~~~~~~~ 246 (346)
T 4a2c_A 227 LRFNQLILETAGVPQTVELA 246 (346)
T ss_dssp GCSSEEEEECSCSHHHHHHH
T ss_pred cCCcccccccccccchhhhh
Confidence 55678887777755444433
No 475
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=67.55 E-value=2.1 Score=45.79 Aligned_cols=36 Identities=25% Similarity=0.570 Sum_probs=29.6
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.|+|||.|++.. ||+.+ ++.+.+.|++|++++.+.+
T Consensus 2 nK~vlVTGas~G-IG~ai---------a~~la~~Ga~V~~~~~~~~ 37 (247)
T 3ged_A 2 NRGVIVTGGGHG-IGKQI---------CLDFLEAGDKVCFIDIDEK 37 (247)
T ss_dssp CCEEEEESTTSH-HHHHH---------HHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEecCCCH-HHHHH---------HHHHHHCCCEEEEEeCCHH
Confidence 488999998875 66655 9999999999999987643
No 476
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=67.54 E-value=6.4 Score=42.04 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-ccCc-c-eEE-ECCCCHHHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PGLA-D-RTY-ITPMTPELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~~a-d-~~~-i~p~~~~~v~~i~~~~ 166 (1190)
..|+|||+|++.- -|+.+++.|.+.|++|++++.++...... .... . ..+ .+-.+.+.+.+++++.
T Consensus 8 ~~k~vlITGas~g----------IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (261)
T 3n74_A 8 EGKVALITGAGSG----------FGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAA 77 (261)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence 3579999998742 27899999999999999998765321000 0001 1 122 2334566666655543
Q ss_pred -----CCCEEEecCC
Q 001014 167 -----RPDALLPTMG 176 (1190)
Q Consensus 167 -----~~d~Vip~~~ 176 (1190)
++|.++...+
T Consensus 78 ~~~~g~id~li~~Ag 92 (261)
T 3n74_A 78 LSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEECCc
Confidence 7899987654
No 477
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=67.40 E-value=6.8 Score=42.23 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-c---c-Ccc-eEE-ECCCCHHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-P---G-LAD-RTY-ITPMTPELVEQVL 163 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~---~-~ad-~~~-i~p~~~~~v~~i~ 163 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... . . -.. ..+ .+-.+.+.+.+++
T Consensus 30 ~~k~vlITGasgg----------IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 99 (272)
T 1yb1_A 30 TGEIVLITGAGHG----------IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSA 99 (272)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHH
Confidence 3479999998742 27899999999999999998764311000 0 0 011 122 3334566666665
Q ss_pred HHc-----CCCEEEecCC
Q 001014 164 EKE-----RPDALLPTMG 176 (1190)
Q Consensus 164 ~~~-----~~d~Vip~~~ 176 (1190)
++. ++|+++...+
T Consensus 100 ~~~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 100 KKVKAEIGDVSILVNNAG 117 (272)
T ss_dssp HHHHHHTCCCSEEEECCC
T ss_pred HHHHHHCCCCcEEEECCC
Confidence 532 7899986654
No 478
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=67.20 E-value=19 Score=39.35 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=30.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCC
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPA 137 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~ 137 (1190)
++||.|||.|.. |..+++.|.+.|++|++++.++.
T Consensus 3 m~~I~iiG~G~m-----------G~~~a~~l~~~G~~V~~~d~~~~ 37 (302)
T 2h78_A 3 MKQIAFIGLGHM-----------GAPMATNLLKAGYLLNVFDLVQS 37 (302)
T ss_dssp CCEEEEECCSTT-----------HHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEEeecHH-----------HHHHHHHHHhCCCeEEEEcCCHH
Confidence 469999999965 78899999999999999987654
No 479
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=67.15 E-value=5.7 Score=42.42 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=46.6
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC-CccCc-ce-EE-ECCCCHHHHHHHHHHc-
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT-DPGLA-DR-TY-ITPMTPELVEQVLEKE- 166 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~-~~~~a-d~-~~-i~p~~~~~v~~i~~~~- 166 (1190)
.|+|||+|++.- -|+.+++.|.+.|++|++++.++..... ..... .. .+ .+-.+.+.+.+++++.
T Consensus 5 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (254)
T 1hdc_A 5 GKTVIITGGARG----------LGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CSEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCcH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 468999998642 2789999999999999999876431100 00001 11 12 2333566666655532
Q ss_pred ----CCCEEEecCC
Q 001014 167 ----RPDALLPTMG 176 (1190)
Q Consensus 167 ----~~d~Vip~~~ 176 (1190)
++|.++..-+
T Consensus 75 ~~~g~iD~lv~nAg 88 (254)
T 1hdc_A 75 EEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 7999987654
No 480
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=67.10 E-value=5 Score=40.05 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=29.0
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
.+|+|+|+|+. |..++..|.+.|.+|.+++..+
T Consensus 2 ~~vvIIGgG~~-----------Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPS-----------GLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHH-----------HHHHHHHHHHTTCCEEEEECSC
T ss_pred CeEEEECCCHH-----------HHHHHHHHHHCCCcEEEEeCCC
Confidence 37999999954 7889999999999999998765
No 481
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=67.02 E-value=3.6 Score=40.38 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred cceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHC-CCe-eeeccccHHHHHHcCCceEEE
Q 001014 1013 TGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDI-GFK-IVSTSGTAHFLELKGIAVERV 1090 (1190)
Q Consensus 1013 ~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~-i~a~~gt~~~l~~~g~~~~~v 1090 (1190)
+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.+. |++ |++.+|.+.+|--
T Consensus 5 V~Iimgs~SD~~v~~~a~~~l~~~gi~~e--v~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg-------- 74 (159)
T 3rg8_A 5 VIILMGSSSDMGHAEKIASELKTFGIEYA--IRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG-------- 74 (159)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCEEE--EEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH--------
T ss_pred EEEEECcHHHHHHHHHHHHHHHHcCCCEE--EEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH--------
Confidence 57788989999988877777777888876 66778999999999999999886 677 8888888877741
Q ss_pred ecccCCCCcHHhHHHcCcEEEEEEcCCCCCCCCcccHHHHHHHHH--CCCcEEccHHHHHHHHHHHHhccCCCccc-ccc
Q 001014 1091 LKMHEGRPHAGDMVANGQIQMMVITSSGDSLDQIDGLKLRRRGLA--YKVPVITTVSGALANAEAIRSLKSNTVTM-TAL 1167 (1190)
Q Consensus 1091 ~~~~e~~~~~~~~i~~~~i~lvint~~~~~~~~~d~~~iRr~A~~--~~ip~~T~~~~a~a~~~al~~~~~~~~~~-~~l 1167 (1190)
++-.+. .-=||..|.... .-+|.-+- .-++ -|||+.|--....|.+-|.+-+....-++ ..|
T Consensus 75 ---------vvA~~t---~~PVIgVP~~~~--~l~G~dLl-S~vqmp~GvpVatv~~~~nAa~lA~~Il~~~d~~l~~kl 139 (159)
T 3rg8_A 75 ---------FVDGFV---KGATIACPPPSD--SFAGADIY-SSLRMPSGISPALVLEPKNAALLAARIFSLYDKEIADSV 139 (159)
T ss_dssp ---------HHHHHS---SSCEEECCCCCC--GGGGTHHH-HHHCCCTTCCCEECCSHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---------HHHhcc---CCCEEEeeCCCC--CCCCccHH-HHHhCCCCCceEEecCchHHHHHHHHHHhCCCHHHHHHH
Confidence 111111 122677765422 23454422 2222 49999886444445555544322222222 335
Q ss_pred hhhhh
Q 001014 1168 QDFFD 1172 (1190)
Q Consensus 1168 ~~~~~ 1172 (1190)
++|..
T Consensus 140 ~~~r~ 144 (159)
T 3rg8_A 140 KSYME 144 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 482
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=67.00 E-value=4.8 Score=45.15 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCccC-cceEEECCC--CH-HHHHHHHHHc
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPGL-ADRTYITPM--TP-ELVEQVLEKE 166 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~i~p~--~~-~~v~~i~~~~ 166 (1190)
..++|||+|+|++ |..+++.++..|.+|++++.++........+ ++.. +... +. +.+.+.. .
T Consensus 164 ~g~~VlV~GaG~v-----------G~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~~~--~ 229 (339)
T 1rjw_A 164 PGEWVAIYGIGGL-----------GHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEKV--G 229 (339)
T ss_dssp TTCEEEEECCSTT-----------HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHHH--S
T ss_pred CCCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHHHh--C
Confidence 4569999999874 6788999999999999998654321110111 2322 3322 21 2333332 4
Q ss_pred CCCEEEecCCChhH
Q 001014 167 RPDALLPTMGGQTA 180 (1190)
Q Consensus 167 ~~d~Vip~~~g~~~ 180 (1190)
++|.++-+.++...
T Consensus 230 ~~d~vid~~g~~~~ 243 (339)
T 1rjw_A 230 GVHAAVVTAVSKPA 243 (339)
T ss_dssp SEEEEEESSCCHHH
T ss_pred CCCEEEECCCCHHH
Confidence 78999988876433
No 483
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=66.98 E-value=3.5 Score=46.36 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 86 LGKRTDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 86 m~~~~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
|...+..+||+|||.|.+ |..+++.|++.|++|++++.++
T Consensus 2 m~~~~~~~kIgIIG~G~m-----------G~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 2 MTTKDISRPVCILGLGLI-----------GGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp ----CCSSCEEEECCSHH-----------HHHHHHHHHHTTCCEEEECSCH
T ss_pred CCccCCCCEEEEEeecHH-----------HHHHHHHHHHCCCEEEEEeCCH
Confidence 334445679999999965 7889999999999999998654
No 484
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=66.97 E-value=14 Score=39.85 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCC
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNP 136 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~ 136 (1190)
..|++||+|++.- -|+.+++.|.+.|++|++++.++
T Consensus 9 ~~k~~lVTGas~g----------IG~a~a~~l~~~G~~V~~~~r~~ 44 (281)
T 3s55_A 9 EGKTALITGGARG----------MGRSHAVALAEAGADIAICDRCE 44 (281)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEeCCCch----------HHHHHHHHHHHCCCeEEEEeCCc
Confidence 4579999998742 27899999999999999998764
No 485
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=66.97 E-value=11 Score=41.56 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCC
Q 001014 90 TDLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPAT 138 (1190)
Q Consensus 90 ~~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~ 138 (1190)
...++|+|+|.|.+ |..+++.|+..|++|+.++.++..
T Consensus 142 l~g~~vgIIG~G~I-----------G~~~A~~l~~~G~~V~~~d~~~~~ 179 (311)
T 2cuk_A 142 LQGLTLGLVGMGRI-----------GQAVAKRALAFGMRVVYHARTPKP 179 (311)
T ss_dssp CTTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEECSSCCS
T ss_pred CCCCEEEEEEECHH-----------HHHHHHHHHHCCCEEEEECCCCcc
Confidence 45679999999976 788999999999999999876653
No 486
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=66.92 E-value=5.8 Score=42.32 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=46.2
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc----Ccc-eEE-ECCCCHHHHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG----LAD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~----~ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.++++
T Consensus 2 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 71 (256)
T 1geg_A 2 KKVALVTGAGQG----------IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVE 71 (256)
T ss_dssp CCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCCh----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 368999998742 27899999999999999997664311000 00 001 122 23335666666555
Q ss_pred Hc-----CCCEEEecCC
Q 001014 165 KE-----RPDALLPTMG 176 (1190)
Q Consensus 165 ~~-----~~d~Vip~~~ 176 (1190)
+. ++|.++...+
T Consensus 72 ~~~~~~g~id~lv~nAg 88 (256)
T 1geg_A 72 QARKTLGGFDVIVNNAG 88 (256)
T ss_dssp HHHHHTTCCCEEEECCC
T ss_pred HHHHHhCCCCEEEECCC
Confidence 32 7899986554
No 487
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=66.84 E-value=4 Score=46.26 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCe-EEEecCCCCCcCccccCCcceeecCCc-------HHHHHH
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYE-TIMMNSNPETVSTDYDTSDRLYFEPLT-------VEDVLN 712 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~-vi~v~~~p~~~s~~~~~ad~~~~~p~~-------~e~v~~ 712 (1190)
...++|||+|+|+. +..+++.++.+|.+ |++++.+++.......+++..+....+ .+.+.+
T Consensus 178 ~~g~~VlV~GaG~v-----------G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 178 RLGDPVLICGAGPI-----------GLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CTTCCEEEECCSHH-----------HHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHH
Q ss_pred HhhhcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEccCC
Q 001014 713 VIDLERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWGTS 762 (1190)
Q Consensus 713 i~~~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g~~ 762 (1190)
.....++|.|+-..|+......+..+- +.| +++-.+|..
T Consensus 247 ~t~g~g~Dvvid~~g~~~~~~~~~~~l----------~~~-G~iv~~G~~ 285 (363)
T 3m6i_A 247 SFGGIEPAVALECTGVESSIAAAIWAV----------KFG-GKVFVIGVG 285 (363)
T ss_dssp HTSSCCCSEEEECSCCHHHHHHHHHHS----------CTT-CEEEECCCC
T ss_pred HhCCCCCCEEEECCCChHHHHHHHHHh----------cCC-CEEEEEccC
No 488
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=66.77 E-value=3.4 Score=43.54 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCC--eEEEecCCCCC
Q 001014 642 QKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGY--ETIMMNSNPET 689 (1190)
Q Consensus 642 ~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~--~vi~v~~~p~~ 689 (1190)
..++|||+|+... ||+ ++++.|.+.|+ +|++++.+++.
T Consensus 17 ~~~~vlVtGasg~-iG~---------~l~~~L~~~G~~~~V~~~~r~~~~ 56 (242)
T 2bka_A 17 QNKSVFILGASGE-TGR---------VLLKEILEQGLFSKVTLIGRRKLT 56 (242)
T ss_dssp TCCEEEEECTTSH-HHH---------HHHHHHHHHTCCSEEEEEESSCCC
T ss_pred cCCeEEEECCCcH-HHH---------HHHHHHHcCCCCCEEEEEEcCCCC
Confidence 3578999998664 555 44999999999 99999887654
No 489
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=66.75 E-value=2.4 Score=42.36 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=57.2
Q ss_pred ccceeeeeeCCHHHHHHHHHHHcCCCCCCCCceeeecCCCChhHHHHHHHHHHHCCCe-eeeccccHHHHH
Q 001014 1012 STGEVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAKAFLDIGFK-IVSTSGTAHFLE 1081 (1190)
Q Consensus 1012 s~G~v~~~g~~~~eA~~ka~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~a~~gt~~~l~ 1081 (1190)
.+|-|||...|++-+..-+.....+.+|.+ +-+...+++.+.+.++++.+.++|++ |+|.+|.+.+|-
T Consensus 15 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~d--v~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp 83 (183)
T 1o4v_A 15 RVGIIMGSDSDLPVMKQAAEILEEFGIDYE--ITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP 83 (183)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCEEE--EEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH
T ss_pred eEEEEeccHHHHHHHHHHHHHHHHcCCCeE--EEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH
Confidence 357789999999988887777778888866 66778899999999999999999998 888888887774
No 490
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=66.69 E-value=7.2 Score=42.63 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc-----Ccc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG-----LAD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~-----~ad-~~~-i~p~~~~~v~~i 162 (1190)
..++|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.++
T Consensus 25 ~~k~vlITGasgg----------iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 94 (302)
T 1w6u_A 25 QGKVAFITGGGTG----------LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNT 94 (302)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence 3578999998742 38899999999999999998764311000 00 011 122 233356666666
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
++.. ++|+++...+
T Consensus 95 ~~~~~~~~g~id~li~~Ag 113 (302)
T 1w6u_A 95 VSELIKVAGHPNIVINNAA 113 (302)
T ss_dssp HHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 6543 6899986654
No 491
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=66.62 E-value=6.5 Score=42.48 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=45.3
Q ss_pred CCEEEEEcCC---ccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCCcc----Cc-ceEE-ECCCCHHHHHHH
Q 001014 92 LRKILILGAG---PIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPG----LA-DRTY-ITPMTPELVEQV 162 (1190)
Q Consensus 92 ~~kVLIiG~G---~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~----~a-d~~~-i~p~~~~~v~~i 162 (1190)
.|+|||+|++ .+ |+.+++.|.+.|++|++++.++........ .. -..+ .+-.+.+.+.++
T Consensus 6 ~k~vlVTGas~~~gI-----------G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~ 74 (275)
T 2pd4_A 6 GKKGLIVGVANNKSI-----------AYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSL 74 (275)
T ss_dssp TCEEEEECCCSTTSH-----------HHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcH-----------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHH
Confidence 4789999974 33 789999999999999999876530000000 00 1122 333456666655
Q ss_pred HHHc-----CCCEEEecCC
Q 001014 163 LEKE-----RPDALLPTMG 176 (1190)
Q Consensus 163 ~~~~-----~~d~Vip~~~ 176 (1190)
+++. ++|+++..-+
T Consensus 75 ~~~~~~~~g~id~lv~nAg 93 (275)
T 2pd4_A 75 YNSVKKDLGSLDFIVHSVA 93 (275)
T ss_dssp HHHHHHHTSCEEEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCc
Confidence 5532 6788876554
No 492
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=66.55 E-value=8.1 Score=41.69 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=46.7
Q ss_pred CCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCC--------CccCcc-eEE-ECCCCHHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMT--------DPGLAD-RTY-ITPMTPELVEQ 161 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~--------~~~~ad-~~~-i~p~~~~~v~~ 161 (1190)
.|+|||+|++.. -|+.+++.|.+.|++|++++.++..... ...-.. ..+ .+-.+.+.+.+
T Consensus 6 ~k~vlVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (278)
T 1spx_A 6 EKVAIITGSSNG----------IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDE 75 (278)
T ss_dssp TCEEEETTTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCch----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHH
Confidence 468999998642 2789999999999999999876431100 000011 122 23335666666
Q ss_pred HHHHc-----CCCEEEecCC
Q 001014 162 VLEKE-----RPDALLPTMG 176 (1190)
Q Consensus 162 i~~~~-----~~d~Vip~~~ 176 (1190)
++++. ++|+++..-+
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag 95 (278)
T 1spx_A 76 ILSTTLGKFGKLDILVNNAG 95 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 55532 7999987665
No 493
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=66.53 E-value=9.7 Score=41.21 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCc-cccccccccchHHHHHHHHHHHCCCeEEEEccCCCC--CCC-CccCcc-eEE-ECCCCHHHHHHHHH
Q 001014 91 DLRKILILGAGP-IVIGQACEFDYSGTQACKALKEEGYEVILINSNPAT--IMT-DPGLAD-RTY-ITPMTPELVEQVLE 164 (1190)
Q Consensus 91 ~~~kVLIiG~G~-~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~--~~~-~~~~ad-~~~-i~p~~~~~v~~i~~ 164 (1190)
..|+|||+|++. --| |+.+++.|.+.|++|++++.+... ... ...... ..+ .+-.+.+.+.++++
T Consensus 25 ~~k~vlVTGasg~~GI---------G~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 25 AGKKILITGLLSNKSI---------AYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp TTCEEEECCCCSTTCH---------HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCH---------HHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHH
Confidence 357999999541 112 788999999999999999876510 000 000111 222 33346666666665
Q ss_pred Hc-----CCCEEEecCC
Q 001014 165 KE-----RPDALLPTMG 176 (1190)
Q Consensus 165 ~~-----~~d~Vip~~~ 176 (1190)
+. ++|+++...+
T Consensus 96 ~~~~~~g~id~li~nAg 112 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIA 112 (280)
T ss_dssp HHHHHCSSCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 42 6899987655
No 494
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=66.48 E-value=5.1 Score=46.22 Aligned_cols=35 Identities=34% Similarity=0.688 Sum_probs=30.1
Q ss_pred CEEEEEcCCccccccccccchHHHHHHHHHHHCCCe--EEEEccCCCC
Q 001014 93 RKILILGAGPIVIGQACEFDYSGTQACKALKEEGYE--VILINSNPAT 138 (1190)
Q Consensus 93 ~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~--vi~v~~~~~~ 138 (1190)
++|+|||+|+ +|..++..|++.|++ |++++.++..
T Consensus 3 ~~vvIIGaG~-----------AGl~aA~~L~~~g~~~~V~li~~~~~~ 39 (410)
T 3ef6_A 3 THVAIIGNGV-----------GGFTTAQALRAEGFEGRISLIGDEPHL 39 (410)
T ss_dssp CEEEEECCSH-----------HHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred CCEEEEcccH-----------HHHHHHHHHHccCcCCeEEEEECCCCC
Confidence 5899999994 588999999999988 9999877653
No 495
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=66.43 E-value=6.5 Score=44.29 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCCcCccccCCcceeecCCc----HHHHHHHhh-
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPETVSTDYDTSDRLYFEPLT----VEDVLNVID- 715 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~~s~~~~~ad~~~~~p~~----~e~v~~i~~- 715 (1190)
...++|||+|+|+. +..+++.++.+|.+|++++.+++....-..+.-...+...+ .+.+.+...
T Consensus 167 ~~g~~VlV~GaG~v-----------G~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 167 QLGTTVLVIGAGPI-----------GLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp CTTCEEEEECCSHH-----------HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhcc
Q ss_pred --hcCCCccccccCCchhhhhhhhHHhhhccCCCcccCCCCceEEcc
Q 001014 716 --LERPEGIIVQFGGQTPLKLSLPIHQYLDEHRLPSASGDGLVRIWG 760 (1190)
Q Consensus 716 --~~~~d~Vi~~~g~~~~~~la~~l~~~l~~~~~l~~~G~~~i~~~g 760 (1190)
...+|.|+-..++......+..+- +.+ +++-.+|
T Consensus 236 ~~g~g~D~vid~~g~~~~~~~~~~~l----------~~~-G~iv~~G 271 (352)
T 1e3j_A 236 AIGDLPNVTIDCSGNEKCITIGINIT----------RTG-GTLMLVG 271 (352)
T ss_dssp HSSSCCSEEEECSCCHHHHHHHHHHS----------CTT-CEEEECS
T ss_pred ccCCCCCEEEECCCCHHHHHHHHHHH----------hcC-CEEEEEe
No 496
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=66.43 E-value=19 Score=37.79 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=44.8
Q ss_pred CCEEEEEcCCccccccccccc-----------hHHHHHHHHHHHCCCeEEEEccCCCCCCCCccCcceEEECCCCHHHHH
Q 001014 92 LRKILILGAGPIVIGQACEFD-----------YSGTQACKALKEEGYEVILINSNPATIMTDPGLADRTYITPMTPELVE 160 (1190)
Q Consensus 92 ~~kVLIiG~G~~~ig~~~E~d-----------~sg~~~~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~i~p~~~~~v~ 160 (1190)
.++|||.|||-. -..| .-|..+++++.+.|++|+++..+.......+.. ...+...+.+.+.
T Consensus 3 gk~vlVTgG~T~-----E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~--~~~~~v~s~~em~ 75 (232)
T 2gk4_A 3 AMKILVTSGGTS-----EAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPN--LSIREITNTKDLL 75 (232)
T ss_dssp CCEEEEECSBCE-----EESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTT--EEEEECCSHHHHH
T ss_pred CCEEEEeCCCcc-----cccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCC--eEEEEHhHHHHHH
Confidence 468999999610 0000 127899999999999999998654321100111 1223334555555
Q ss_pred HHHHH--cCCCEEEecC
Q 001014 161 QVLEK--ERPDALLPTM 175 (1190)
Q Consensus 161 ~i~~~--~~~d~Vip~~ 175 (1190)
+.+.+ .++|+++..-
T Consensus 76 ~~v~~~~~~~Dili~aA 92 (232)
T 2gk4_A 76 IEMQERVQDYQVLIHSM 92 (232)
T ss_dssp HHHHHHGGGCSEEEECS
T ss_pred HHHHHhcCCCCEEEEcC
Confidence 54443 3689888544
No 497
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=66.39 E-value=3.6 Score=44.01 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCCC
Q 001014 641 TQKKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPET 689 (1190)
Q Consensus 641 ~~~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~~ 689 (1190)
...|+|+|+|++.. ||+ .+++.|.+.|++|++++.+++.
T Consensus 10 ~~~k~vlVTGasgg-iG~---------~~a~~l~~~G~~V~~~~r~~~~ 48 (265)
T 2o23_A 10 VKGLVAVITGGASG-LGL---------ATAERLVGQGASAVLLDLPNSG 48 (265)
T ss_dssp CTTCEEEEETTTSH-HHH---------HHHHHHHHTTCEEEEEECTTSS
T ss_pred CCCCEEEEECCCCh-HHH---------HHHHHHHHCCCEEEEEeCCcHh
Confidence 35689999998774 555 4499999999999999887653
No 498
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=66.36 E-value=7.1 Score=42.01 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCccccccccccchHHHHHHHHHHHCCCeEEEEccCCCCCCCC-cc-----Ccc-eEE-ECCCCHHHHHHH
Q 001014 91 DLRKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTD-PG-----LAD-RTY-ITPMTPELVEQV 162 (1190)
Q Consensus 91 ~~~kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~G~~vi~v~~~~~~~~~~-~~-----~ad-~~~-i~p~~~~~v~~i 162 (1190)
..|+|||+|++.. -|+.+++.|.+.|++|++++.++...... .. -.. ..+ .+-.+.+.+.++
T Consensus 20 ~~k~~lVTGas~g----------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 89 (267)
T 1vl8_A 20 RGRVALVTGGSRG----------LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKL 89 (267)
T ss_dssp TTCEEEEETTTSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 3478999998742 27899999999999999998664311000 00 011 112 233356666655
Q ss_pred HHH-----cCCCEEEecCC
Q 001014 163 LEK-----ERPDALLPTMG 176 (1190)
Q Consensus 163 ~~~-----~~~d~Vip~~~ 176 (1190)
+++ .++|+++...+
T Consensus 90 ~~~~~~~~g~iD~lvnnAg 108 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAG 108 (267)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 543 27899886554
No 499
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=66.35 E-value=2.7 Score=46.29 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=26.2
Q ss_pred CcEEEEECCCCcccCCCcccchhHHHHHHHHHhCCCeEEEecCCCC
Q 001014 643 KKKVLILGGGPNRIGQGIEFDYCCCHTSFSLQSAGYETIMMNSNPE 688 (1190)
Q Consensus 643 ~~kVlIlG~G~~rig~~~efd~~~~~~~~al~~~G~~vi~v~~~p~ 688 (1190)
.++|||+|+... ||+ ++++.|.+.|++|++++.++.
T Consensus 2 ~~~vlVtGatG~-iG~---------~l~~~L~~~g~~V~~~~r~~~ 37 (315)
T 2ydy_A 2 NRRVLVTGATGL-LGR---------AVHKEFQQNNWHAVGCGFRRA 37 (315)
T ss_dssp CCEEEEETTTSH-HHH---------HHHHHHHTTTCEEEEEC----
T ss_pred CCeEEEECCCcH-HHH---------HHHHHHHhCCCeEEEEccCCC
Confidence 368999998664 555 559999999999999986543
No 500
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Probab=66.33 E-value=15 Score=41.09 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=47.4
Q ss_pred EEEEEcCCccccccccccchHHHHHHHHHHHC-CCeEEEEccCCCCC--CCCccC---cc-eEEE-CCCCHHHHHHHHHH
Q 001014 94 KILILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVILINSNPATI--MTDPGL---AD-RTYI-TPMTPELVEQVLEK 165 (1190)
Q Consensus 94 kVLIiG~G~~~ig~~~E~d~sg~~~~~al~~~-G~~vi~v~~~~~~~--~~~~~~---ad-~~~i-~p~~~~~v~~i~~~ 165 (1190)
||||+|+.. +-|..+++.|.+. |++|++++.++... ...... .. ..+. +-.+.+.+.+++++
T Consensus 2 kvlVTGasG----------~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (361)
T 1kew_A 2 KILITGGAG----------FIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQ 71 (361)
T ss_dssp EEEEESTTS----------HHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred EEEEECCCc----------hHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhh
Confidence 799999753 3388999999887 89999997654110 000001 11 2222 33467788888877
Q ss_pred cCCCEEEecCC
Q 001014 166 ERPDALLPTMG 176 (1190)
Q Consensus 166 ~~~d~Vip~~~ 176 (1190)
.++|+|+-..+
T Consensus 72 ~~~d~vih~A~ 82 (361)
T 1kew_A 72 YQPDAVMHLAA 82 (361)
T ss_dssp HCCSEEEECCS
T ss_pred cCCCEEEECCC
Confidence 78999996654
Done!