Query 001016
Match_columns 1190
No_of_seqs 552 out of 1652
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 7.2E-48 2.5E-52 383.1 7.9 138 975-1117 4-142 (143)
2 2p0n_A Hypothetical protein NM 99.5 9.9E-13 3.4E-17 135.3 18.2 145 291-443 15-168 (172)
3 2p0n_A Hypothetical protein NM 99.4 1.4E-12 4.8E-17 134.2 15.8 149 41-194 15-168 (172)
4 3cax_A Uncharacterized protein 99.2 6.9E-11 2.4E-15 135.6 16.0 149 291-443 8-166 (369)
5 2ecm_A Ring finger and CHY zin 99.1 2.1E-11 7.2E-16 102.0 4.5 52 1114-1165 3-54 (55)
6 1iym_A EL5; ring-H2 finger, ub 99.1 3.3E-11 1.1E-15 100.9 4.4 50 1115-1165 4-54 (55)
7 2ep4_A Ring finger protein 24; 99.1 3.7E-11 1.3E-15 106.7 4.4 57 1111-1168 10-66 (74)
8 2ecl_A Ring-box protein 2; RNF 99.1 3E-11 1E-15 110.1 3.7 49 1116-1165 26-75 (81)
9 1x4j_A Ring finger protein 38; 99.1 2.6E-11 8.8E-16 108.3 3.1 52 1114-1166 21-72 (75)
10 2kiz_A E3 ubiquitin-protein li 99.1 6E-11 2.1E-15 103.9 4.6 53 1113-1166 11-63 (69)
11 2l0b_A E3 ubiquitin-protein li 99.1 5.6E-11 1.9E-15 110.5 4.0 52 1114-1166 38-89 (91)
12 2ect_A Ring finger protein 126 99.0 1.5E-10 5E-15 103.9 4.3 52 1114-1166 13-64 (78)
13 3cax_A Uncharacterized protein 99.0 4.6E-09 1.6E-13 120.5 16.2 150 41-192 8-164 (369)
14 1v87_A Deltex protein 2; ring- 99.0 2.9E-10 1E-14 109.1 4.7 54 1114-1167 23-95 (114)
15 2ea6_A Ring finger protein 4; 98.9 4.8E-10 1.6E-14 97.6 3.2 52 1114-1165 13-67 (69)
16 3ng2_A RNF4, snurf, ring finge 98.9 4.8E-10 1.6E-14 98.4 3.1 53 1114-1166 8-63 (71)
17 3dpl_R Ring-box protein 1; ubi 98.9 8.8E-10 3E-14 105.9 4.9 33 1132-1164 67-99 (106)
18 2xeu_A Ring finger protein 4; 98.9 6.5E-10 2.2E-14 95.3 3.4 52 1115-1166 2-56 (64)
19 1chc_A Equine herpes virus-1 r 98.8 1.3E-09 4.5E-14 95.0 4.0 50 1115-1167 4-53 (68)
20 2ecn_A Ring finger protein 141 98.8 4.6E-10 1.6E-14 98.6 0.0 52 1114-1170 13-64 (70)
21 2ct2_A Tripartite motif protei 98.8 4.5E-09 1.5E-13 95.8 4.5 52 1115-1166 14-68 (88)
22 2d8t_A Dactylidin, ring finger 98.7 3.3E-09 1.1E-13 93.7 3.4 49 1114-1166 13-61 (71)
23 1g25_A CDK-activating kinase a 98.7 6.8E-09 2.3E-13 90.0 4.2 51 1116-1166 3-55 (65)
24 4a0k_B E3 ubiquitin-protein li 98.7 1.7E-09 6E-14 105.6 0.5 50 1115-1164 47-110 (117)
25 2djb_A Polycomb group ring fin 98.7 9.3E-09 3.2E-13 91.0 4.1 49 1115-1166 14-62 (72)
26 2d8s_A Cellular modulator of i 98.7 9.2E-09 3.1E-13 94.0 3.6 51 1113-1165 12-69 (80)
27 2csy_A Zinc finger protein 183 98.6 1.6E-08 5.5E-13 91.4 4.2 48 1114-1165 13-60 (81)
28 1e4u_A Transcriptional repress 98.6 9.4E-09 3.2E-13 93.4 2.7 62 1114-1177 9-73 (78)
29 4ayc_A E3 ubiquitin-protein li 98.6 1.1E-08 3.9E-13 101.8 3.5 47 1116-1166 53-99 (138)
30 4ap4_A E3 ubiquitin ligase RNF 98.6 1.6E-08 5.5E-13 98.4 3.2 53 1114-1166 5-60 (133)
31 2yur_A Retinoblastoma-binding 98.6 2.1E-08 7.1E-13 89.4 3.4 51 1115-1169 14-67 (74)
32 2ysl_A Tripartite motif-contai 98.6 3.4E-08 1.2E-12 87.1 4.5 48 1114-1165 18-68 (73)
33 2ecy_A TNF receptor-associated 98.6 2.6E-08 9E-13 86.5 3.5 48 1115-1166 14-62 (66)
34 2y43_A E3 ubiquitin-protein li 98.5 4.1E-08 1.4E-12 92.0 4.0 48 1116-1166 22-69 (99)
35 3lrq_A E3 ubiquitin-protein li 98.5 3.6E-08 1.2E-12 93.0 3.5 48 1116-1166 22-70 (100)
36 2ckl_A Polycomb group ring fin 98.5 6.2E-08 2.1E-12 92.3 4.3 49 1115-1166 14-62 (108)
37 4ap4_A E3 ubiquitin ligase RNF 98.5 6.7E-08 2.3E-12 93.9 4.5 53 1114-1166 70-125 (133)
38 1t1h_A Gspef-atpub14, armadill 98.5 7.3E-08 2.5E-12 86.2 3.9 48 1115-1166 7-55 (78)
39 2ecw_A Tripartite motif-contai 98.4 9.5E-08 3.3E-12 86.0 4.2 48 1115-1166 18-71 (85)
40 2ysj_A Tripartite motif-contai 98.4 1.4E-07 4.8E-12 81.1 4.7 43 1114-1160 18-63 (63)
41 2ckl_B Ubiquitin ligase protei 98.4 9.9E-08 3.4E-12 97.6 4.2 48 1116-1166 54-102 (165)
42 2egp_A Tripartite motif-contai 98.4 5.2E-08 1.8E-12 87.1 1.9 48 1115-1166 11-65 (79)
43 2ecv_A Tripartite motif-contai 98.4 1.3E-07 4.4E-12 85.2 4.1 48 1115-1166 18-71 (85)
44 2ecj_A Tripartite motif-contai 98.4 1.3E-07 4.3E-12 79.6 3.8 42 1115-1160 14-58 (58)
45 3fl2_A E3 ubiquitin-protein li 98.4 1.3E-07 4.4E-12 92.3 3.9 47 1116-1166 52-99 (124)
46 3ztg_A E3 ubiquitin-protein li 98.3 2.6E-07 8.8E-12 85.2 3.7 47 1115-1165 12-61 (92)
47 2ct0_A Non-SMC element 1 homol 98.3 3.9E-07 1.3E-11 82.2 3.9 48 1115-1165 14-63 (74)
48 1jm7_A BRCA1, breast cancer ty 98.3 3.7E-07 1.3E-11 86.9 4.0 47 1116-1166 21-70 (112)
49 3l11_A E3 ubiquitin-protein li 98.3 1.6E-07 5.5E-12 90.3 1.5 47 1116-1166 15-62 (115)
50 2vje_A E3 ubiquitin-protein li 98.3 2.2E-07 7.6E-12 81.0 1.8 54 1111-1167 3-58 (64)
51 3hct_A TNF receptor-associated 98.2 5.3E-07 1.8E-11 87.4 3.8 64 1115-1182 17-86 (118)
52 1z6u_A NP95-like ring finger p 98.2 6.5E-07 2.2E-11 90.8 4.0 47 1116-1166 78-125 (150)
53 1rmd_A RAG1; V(D)J recombinati 98.2 6.3E-07 2.2E-11 86.3 3.7 47 1116-1166 23-70 (116)
54 2vje_B MDM4 protein; proto-onc 98.2 4.2E-07 1.4E-11 79.0 1.5 51 1114-1167 5-57 (63)
55 2y1n_A E3 ubiquitin-protein li 98.1 1.4E-06 4.8E-11 100.5 4.5 49 1114-1166 330-379 (389)
56 1bor_A Transcription factor PM 98.1 7.4E-07 2.5E-11 75.4 1.6 46 1113-1165 3-48 (56)
57 2kr4_A Ubiquitin conjugation f 98.0 1.9E-06 6.7E-11 79.1 3.4 48 1115-1166 13-60 (85)
58 4ic3_A E3 ubiquitin-protein li 98.0 9E-07 3.1E-11 79.1 0.7 45 1115-1167 23-68 (74)
59 2kre_A Ubiquitin conjugation f 98.0 2.2E-06 7.6E-11 81.3 3.3 48 1115-1166 28-75 (100)
60 1jm7_B BARD1, BRCA1-associated 98.0 1.5E-06 5.1E-11 84.0 1.9 46 1115-1165 21-66 (117)
61 3knv_A TNF receptor-associated 98.0 2.1E-06 7.1E-11 86.3 2.6 46 1115-1164 30-76 (141)
62 1wgm_A Ubiquitin conjugation f 98.0 3.7E-06 1.3E-10 79.5 3.6 48 1115-1166 21-69 (98)
63 3k1l_B Fancl; UBC, ring, RWD, 97.9 3.2E-06 1.1E-10 95.4 1.9 54 1112-1165 304-372 (381)
64 1vyx_A ORF K3, K3RING; zinc-bi 97.9 7.6E-06 2.6E-10 70.8 3.6 50 1112-1165 2-58 (60)
65 2c2l_A CHIP, carboxy terminus 97.8 6.6E-06 2.3E-10 89.6 2.5 48 1115-1166 207-255 (281)
66 2ecg_A Baculoviral IAP repeat- 97.8 5.9E-06 2E-10 73.9 1.7 43 1116-1166 25-68 (75)
67 2ea5_A Cell growth regulator w 97.8 9.1E-06 3.1E-10 71.8 2.4 47 1114-1168 13-60 (68)
68 3hcs_A TNF receptor-associated 97.7 9.6E-06 3.3E-10 83.1 2.6 48 1115-1166 17-65 (170)
69 1wim_A KIAA0161 protein; ring 97.7 1.4E-05 4.7E-10 74.4 3.3 52 1114-1166 3-66 (94)
70 2yho_A E3 ubiquitin-protein li 97.6 1.2E-05 4.3E-10 72.9 0.7 46 1116-1169 18-64 (79)
71 2yu4_A E3 SUMO-protein ligase 97.5 4.2E-05 1.4E-09 71.4 3.6 46 1115-1163 6-59 (94)
72 2f42_A STIP1 homology and U-bo 97.3 8.2E-05 2.8E-09 77.7 3.3 47 1116-1166 106-153 (179)
73 3htk_C E3 SUMO-protein ligase 97.3 9E-05 3.1E-09 81.3 3.2 48 1115-1165 180-231 (267)
74 3t6p_A Baculoviral IAP repeat- 97.2 5.9E-05 2E-09 86.2 0.4 44 1116-1167 295-339 (345)
75 2bay_A PRE-mRNA splicing facto 97.1 0.00023 7.7E-09 61.7 2.8 48 1116-1166 3-50 (61)
76 3vk6_A E3 ubiquitin-protein li 96.5 0.0013 4.5E-08 62.1 3.6 50 1118-1170 3-53 (101)
77 3u9j_A F-BOX/LRR-repeat protei 96.4 0.017 5.9E-07 57.1 10.4 146 44-194 8-156 (160)
78 3nw0_A Non-structural maintena 95.4 0.0084 2.9E-07 65.2 4.0 46 1117-1165 181-228 (238)
79 3u9j_A F-BOX/LRR-repeat protei 94.3 0.86 2.9E-05 45.3 14.1 145 293-442 7-155 (160)
80 2k2d_A Ring finger and CHY zin 92.9 0.019 6.4E-07 52.4 0.0 24 1157-1180 1-24 (79)
81 2ko5_A Ring finger protein Z; 88.4 0.16 5.5E-06 47.5 1.7 46 1115-1166 27-73 (99)
82 2jrp_A Putative cytoplasmic pr 83.7 0.35 1.2E-05 44.2 1.4 41 1007-1064 18-58 (81)
83 2jne_A Hypothetical protein YF 71.6 1.1 3.9E-05 42.1 1.0 49 999-1064 33-88 (101)
84 3v43_A Histone acetyltransfera 70.5 1.5 5.1E-05 42.1 1.6 73 1087-1162 22-111 (112)
85 2kwj_A Zinc finger protein DPF 69.9 0.72 2.5E-05 44.4 -0.7 86 1076-1165 2-110 (114)
86 2ysm_A Myeloid/lymphoid or mix 69.4 2 7E-05 40.8 2.3 45 1118-1163 56-104 (111)
87 2jun_A Midline-1; B-BOX, TRIM, 66.9 3 0.0001 38.5 2.8 34 1116-1151 3-38 (101)
88 4bbq_A Lysine-specific demethy 62.1 1.1 3.9E-05 42.8 -1.1 46 1116-1162 59-113 (117)
89 2lbm_A Transcriptional regulat 60.7 6.2 0.00021 39.7 3.9 90 1070-1163 12-117 (142)
90 4ayb_P DNA-directed RNA polyme 59.5 4.5 0.00015 33.3 2.1 28 1055-1082 1-33 (48)
91 2rgt_A Fusion of LIM/homeobox 55.6 4.3 0.00015 41.1 1.8 39 1117-1165 66-104 (169)
92 3ql9_A Transcriptional regulat 55.3 7.5 0.00026 38.5 3.4 69 1092-1164 32-112 (129)
93 3lqh_A Histone-lysine N-methyl 54.3 4.8 0.00016 42.1 1.9 49 1117-1166 3-66 (183)
94 1wil_A KIAA1045 protein; ring 51.2 11 0.00038 34.7 3.5 34 1115-1150 14-47 (89)
95 1we9_A PHD finger family prote 49.7 3.9 0.00013 35.1 0.3 49 1114-1163 4-58 (64)
96 1g47_A Pinch protein; LIM doma 45.7 12 0.0004 32.5 2.8 43 1115-1167 10-52 (77)
97 2lri_C Autoimmune regulator; Z 45.1 13 0.00045 32.5 3.0 44 1116-1163 12-59 (66)
98 3rfy_A Peptidyl-prolyl CIS-tra 44.6 1.1E+02 0.0037 35.3 11.2 79 73-155 45-143 (369)
99 2dkt_A Ring finger and CHY zin 44.2 5.3 0.00018 40.2 0.3 42 1077-1125 85-127 (143)
100 2k16_A Transcription initiatio 43.5 6.3 0.00022 34.8 0.7 49 1116-1165 18-70 (75)
101 1x4l_A Skeletal muscle LIM-pro 42.8 13 0.00046 31.8 2.7 41 1116-1166 5-47 (72)
102 1x61_A Thyroid receptor intera 42.7 13 0.00044 31.9 2.6 40 1116-1165 5-44 (72)
103 1x4k_A Skeletal muscle LIM-pro 42.4 12 0.00042 31.9 2.4 40 1117-1166 6-45 (72)
104 1wyh_A SLIM 2, skeletal muscle 38.6 11 0.00038 32.2 1.5 41 1116-1166 5-45 (72)
105 6rxn_A Rubredoxin; electron tr 38.1 13 0.00046 30.4 1.8 26 1055-1080 2-38 (46)
106 2pv0_B DNA (cytosine-5)-methyl 37.7 24 0.00082 40.9 4.4 86 1073-1164 51-149 (386)
107 2egq_A FHL1 protein; LIM domai 37.4 17 0.00059 31.5 2.6 41 1116-1166 15-58 (77)
108 1zfo_A LAsp-1; LIM domain, zin 37.4 11 0.00036 28.1 1.0 29 1116-1147 3-31 (31)
109 1x68_A FHL5 protein; four-and- 37.1 15 0.00052 31.9 2.2 41 1116-1166 5-47 (76)
110 1x63_A Skeletal muscle LIM-pro 36.1 21 0.00072 31.3 3.0 41 1116-1166 15-55 (82)
111 3agt_A Hemerythrin-like domain 35.6 3.1E+02 0.01 26.4 11.5 109 47-177 19-131 (136)
112 3f6q_B LIM and senescent cell 35.5 16 0.00055 30.9 2.0 43 1115-1167 10-52 (72)
113 2jvx_A NF-kappa-B essential mo 34.1 11 0.00037 27.9 0.6 17 1154-1170 3-19 (28)
114 2d8x_A Protein pinch; LIM doma 33.6 21 0.00072 30.4 2.4 41 1115-1167 4-44 (70)
115 2v3b_B Rubredoxin 2, rubredoxi 33.0 18 0.00062 30.6 1.8 14 1055-1068 1-15 (55)
116 1dx8_A Rubredoxin; electron tr 32.2 19 0.00064 32.0 1.9 14 1054-1067 4-18 (70)
117 3agt_A Hemerythrin-like domain 32.0 3.5E+02 0.012 26.0 13.4 113 294-427 16-132 (136)
118 2cup_A Skeletal muscle LIM-pro 31.9 24 0.00082 32.2 2.7 45 1116-1165 33-77 (101)
119 2kn9_A Rubredoxin; metalloprot 31.6 23 0.00078 32.4 2.4 15 1054-1068 24-39 (81)
120 1twf_L ABC10-alpha, DNA-direct 31.4 22 0.00075 31.6 2.2 25 1056-1080 27-53 (70)
121 2ysm_A Myeloid/lymphoid or mix 30.8 17 0.0006 34.3 1.6 37 1114-1151 5-41 (111)
122 2vpb_A Hpygo1, pygopus homolog 29.7 9.6 0.00033 33.2 -0.4 48 1115-1162 7-65 (65)
123 1f62_A Transcription factor WS 29.7 28 0.00097 28.3 2.4 45 1118-1163 2-50 (51)
124 2xqn_T Testin, TESS; metal-bin 29.4 29 0.00099 33.0 2.9 40 1116-1165 63-104 (126)
125 1s24_A Rubredoxin 2; electron 29.3 20 0.00068 33.2 1.6 17 1052-1068 30-47 (87)
126 2ehe_A Four and A half LIM dom 28.4 30 0.001 30.4 2.6 41 1116-1166 15-55 (82)
127 2cor_A Pinch protein; LIM doma 28.3 26 0.0009 30.8 2.2 41 1115-1167 14-54 (79)
128 2cu8_A Cysteine-rich protein 2 28.3 27 0.00092 30.3 2.2 41 1115-1166 8-48 (76)
129 2dar_A PDZ and LIM domain prot 27.5 30 0.001 31.1 2.4 42 1113-1166 22-63 (90)
130 1nyp_A Pinch protein; LIM doma 27.1 17 0.00059 30.6 0.7 39 1116-1166 5-43 (66)
131 2kdx_A HYPA, hydrogenase/ureas 26.8 27 0.00091 33.6 2.1 25 1057-1081 73-99 (119)
132 1iml_A CRIP, cysteine rich int 26.6 19 0.00067 31.2 1.0 38 1118-1166 2-39 (76)
133 2co8_A NEDD9 interacting prote 26.3 32 0.0011 30.5 2.4 43 1114-1167 13-55 (82)
134 3o70_A PHD finger protein 13; 26.0 15 0.00051 32.2 0.1 49 1113-1163 16-67 (68)
135 2xb1_A Pygopus homolog 2, B-ce 26.0 10 0.00036 36.0 -0.9 49 1116-1165 3-63 (105)
136 2pv0_B DNA (cytosine-5)-methyl 25.9 20 0.00069 41.5 1.2 34 994-1038 46-79 (386)
137 4rxn_A Rubredoxin; electron tr 25.7 28 0.00097 29.4 1.8 14 1055-1068 1-15 (54)
138 2cur_A Skeletal muscle LIM-pro 25.2 36 0.0012 28.8 2.4 39 1116-1166 5-43 (69)
139 2l3k_A Rhombotin-2, linker, LI 24.9 26 0.00088 33.6 1.6 8 1139-1146 29-36 (123)
140 2l5u_A Chromodomain-helicase-D 24.6 38 0.0013 28.8 2.4 47 1113-1163 8-58 (61)
141 2dj7_A Actin-binding LIM prote 24.5 39 0.0013 29.9 2.6 41 1115-1166 14-54 (80)
142 3izc_m 60S ribosomal protein R 24.1 27 0.00091 32.7 1.4 15 1070-1084 52-66 (92)
143 1vq8_Z 50S ribosomal protein L 23.8 21 0.00071 32.8 0.6 30 1056-1085 26-58 (83)
144 3i2d_A E3 SUMO-protein ligase 23.6 55 0.0019 37.7 4.2 47 1116-1165 249-299 (371)
145 1x6a_A LIMK-2, LIM domain kina 23.5 37 0.0012 29.7 2.2 38 1117-1166 16-53 (81)
146 3shb_A E3 ubiquitin-protein li 23.0 90 0.0031 28.0 4.7 72 975-1064 3-75 (77)
147 1rij_A E6APN1 peptide; Trp-CAG 23.0 46 0.0016 23.5 2.0 17 234-250 2-19 (26)
148 1e8j_A Rubredoxin; iron-sulfur 23.0 46 0.0016 27.9 2.5 11 1055-1065 1-11 (52)
149 2kgg_A Histone demethylase jar 22.5 72 0.0025 26.2 3.6 44 1117-1161 3-52 (52)
150 4fo9_A E3 SUMO-protein ligase 22.5 60 0.0021 37.3 4.2 47 1116-1165 215-265 (360)
151 3u5c_f 40S ribosomal protein S 22.5 43 0.0015 33.7 2.8 59 978-1065 83-146 (152)
152 1wev_A Riken cDNA 1110020M19; 22.4 11 0.00038 34.6 -1.5 54 1115-1168 15-77 (88)
153 1tac_A TAT protein; transcript 22.3 57 0.0019 30.0 3.1 24 1059-1093 26-49 (86)
154 3a1b_A DNA (cytosine-5)-methyl 22.2 39 0.0013 34.6 2.3 87 1072-1164 36-135 (159)
155 3u5n_A E3 ubiquitin-protein li 22.1 23 0.00079 37.1 0.7 46 1114-1163 5-54 (207)
156 1v6g_A Actin binding LIM prote 22.1 49 0.0017 28.9 2.7 46 1109-1166 8-53 (81)
157 3iz5_m 60S ribosomal protein L 22.0 28 0.00097 32.5 1.2 11 1071-1081 53-63 (92)
158 1x62_A C-terminal LIM domain p 21.7 45 0.0015 29.1 2.4 40 1115-1166 14-53 (79)
159 1mm2_A MI2-beta; PHD, zinc fin 21.3 28 0.00095 29.7 0.9 47 1114-1164 7-57 (61)
160 3ask_A E3 ubiquitin-protein li 21.2 1.3E+02 0.0044 32.5 6.2 48 1018-1079 149-196 (226)
161 1x3h_A Leupaxin; paxillin fami 21.1 49 0.0017 28.7 2.6 38 1117-1166 16-53 (80)
162 1wii_A Hypothetical UPF0222 pr 21.1 30 0.001 31.9 1.1 12 1114-1125 45-56 (85)
163 1wep_A PHF8; structural genomi 21.0 55 0.0019 29.2 2.8 48 1116-1165 12-65 (79)
164 2jtn_A LIM domain-binding prot 21.0 33 0.0011 35.0 1.6 41 1116-1166 119-159 (182)
165 2jne_A Hypothetical protein YF 20.7 23 0.00079 33.4 0.3 24 1091-1126 48-71 (101)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=7.2e-48 Score=383.09 Aligned_cols=138 Identities=44% Similarity=1.028 Sum_probs=132.4
Q ss_pred CCCCCcccccccCCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCCc
Q 001016 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1190)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~ckl~~pcC~k~y~Cr~CHde~~dH~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc~~~ 1054 (1190)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++|++++.|++ ||..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~---Cg~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED---CSTL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS---SCCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC---CCcc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999998 6999
Q ss_pred cceEeccccccccCCCCcccCCCCCccccCCCCCccccccCCccccccccc-cccccccCCCCC
Q 001016 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1190)
Q Consensus 1055 fa~Y~C~~C~l~dd~k~~yHC~~CgiCrvg~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~ 1117 (1190)
|++|||+||||||++|+||||++|||||||+ |+|||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999997 699999999999999999 899999998753
No 2
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.47 E-value=9.9e-13 Score=135.32 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=119.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh--------h
Q 001016 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD-FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--------S 361 (1190)
Q Consensus 291 ~~PId~l~~~HkALRrEL~~L~~~a~~~~~~gd-~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~--------~ 361 (1190)
..||+.|...|+.||+.+..|...+..+...|+ ...+..+..-+.+|...+..||..||++|||+|..+. .
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 569999999999999999999988877643332 2334677888889999999999999999999997642 8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhH
Q 001016 362 FAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQS 441 (1190)
Q Consensus 362 me~EH~~ie~l~e~l~~ll~~l~~~~~~~~~~~~~~eLa~~l~~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~~L~~~~ 441 (1190)
|..||..+...++.|...+..+..+.... . .+..+..+.+.+..|+.+||+ +||++.+.+|.++|.+|+.++
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~-~------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYV-P------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCC-C------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCc-c------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHH
Confidence 89999999999999999887776443211 1 125567778999999999999 999999999999999999876
Q ss_pred hh
Q 001016 442 LC 443 (1190)
Q Consensus 442 l~ 443 (1190)
..
T Consensus 167 ~~ 168 (172)
T 2p0n_A 167 AA 168 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.43 E-value=1.4e-12 Score=134.20 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=122.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhh---hhHHHH
Q 001016 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIART 117 (1190)
Q Consensus 41 ~~Pi~~~~~~HkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv---~~v~~~ 117 (1190)
+.||+++.--|+.+|+.|..|..++..+.....+......+.+-+++|...++.||..|++++||+|..+. .+++..
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 34999999999999999999988887776411233344677778888999999999999999999998765 467899
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhcCCHHHHHHHHHHHhc
Q 001016 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1190)
Q Consensus 118 ~~~EH~~~~~lf~~l~~~l~~~~~~~~--~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~i~ 194 (1190)
+..||..+..+++.|...+..+..+.. .. +..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++.+
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~----~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPD----EEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCC----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999988864432 11 14455566699999999999 99999999999999999998753
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.23 E-value=6.9e-11 Score=135.65 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=123.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcccCC----cccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh------
Q 001016 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1190)
Q Consensus 291 ~~PId~l~~~HkALRrEL~~L~~~a~~~~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~------ 360 (1190)
-+||+.|...|++|++.|..|...+.++..... ...+..+.+-+.+|.++-..|+..|+++|||+|+.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCCCc
Confidence 569999999999999999999999999863332 2467889899999977443788889999999997552
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Q 001016 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1190)
Q Consensus 361 ~me~EH~~ie~l~e~l~~ll~~l~~~~~~~~~~~~~~eLa~~l~~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~~L~~~ 440 (1190)
.|..||+++..++..+..++..... . .. .+.+..+...+..+...+.+|+.+||+.|||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~--~~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M--PW-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHhcccc-c--ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 8999999999999999999965331 1 10 244677888899999999999999999999999999999999999775
Q ss_pred Hhh
Q 001016 441 SLC 443 (1190)
Q Consensus 441 ~l~ 443 (1190)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.15 E-value=2.1e-11 Score=101.95 Aligned_cols=52 Identities=35% Similarity=0.866 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
..+..|+||++.+.++...+..++|||.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578899999996666667888999999999999999999999999999874
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.11 E-value=3.3e-11 Score=100.88 Aligned_cols=50 Identities=30% Similarity=0.755 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCCCeeEecC-CCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
.+..|+||+++ +..++.+..+| |||.||..|+.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45789999999 56666677787 9999999999999999999999998763
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.7e-11 Score=106.71 Aligned_cols=57 Identities=25% Similarity=0.658 Sum_probs=48.8
Q ss_pred ccCCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccchh
Q 001016 1111 REKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1190)
Q Consensus 1111 ~e~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m~ 1168 (1190)
.+...+..|+||++. +.....+..+||||.||..||.+|++.+.+||+||+.+..+.
T Consensus 10 ~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 10 KELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred ccCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 344567899999999 666677788999999999999999999999999999987643
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3e-11 Score=110.06 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=40.5
Q ss_pred CCCCcccccccccCCCeeEec-CCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~L-pCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
+..|+||+++ +..++.++.+ +|||.||.+||++|+..+.+||+||+++.
T Consensus 26 ~~~C~iC~~~-~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAE-NKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHH-TCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred hccCcccccc-cCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4678888888 4455545555 69999999999999999999999999875
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.6e-11 Score=108.27 Aligned_cols=52 Identities=33% Similarity=0.728 Sum_probs=46.4
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.....|+||+++ |...+.++.+||||.||..|+..|++.+.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 456789999999 6667778899999999999999999999999999998865
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=6e-11 Score=103.95 Aligned_cols=53 Identities=30% Similarity=0.763 Sum_probs=46.1
Q ss_pred CCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
......|+||++. +.....++.+||||.||..|+.+|+..+.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4457789999998 5666678889999999999999999999999999998753
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.06 E-value=5.6e-11 Score=110.47 Aligned_cols=52 Identities=31% Similarity=0.830 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
..+..|+||++. |..++.++.+||||.||..||..|+..+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999999 6666778889999999999999999999999999998753
No 12
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.01 E-value=1.5e-10 Score=103.90 Aligned_cols=52 Identities=37% Similarity=0.900 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.....|+||++. |.....+..++|||.||..||..|+..+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 346789999998 6666678889999999999999999999999999999864
No 13
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.98 E-value=4.6e-09 Score=120.53 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=128.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHHHHHHHHhhccccccchhhHHHh-hhhH
Q 001016 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGG-----GDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIR-VKNI 114 (1190)
Q Consensus 41 ~~Pi~~~~~~HkAlR~eL~~l~~~a~~~~~~~gd~-----~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~R-v~~v 114 (1190)
..|+..|.-=|+.||+.|..|..++..+.. +.. ..+..+.+-+++|..+-+.|+.-|-++|||.|+.+ ..+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~--~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLAT--TKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCC
Confidence 459999999999999999999999999887 553 57888888899997744367777777999999644 3678
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhcCCHHHHHHHHHHH
Q 001016 115 ARTYSLEHEGESVLFDQLFELLNSSMRNE-ESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQF 192 (1190)
Q Consensus 115 ~~~~~~EH~~~~~lf~~l~~~l~~~~~~~-~~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~ 192 (1190)
+..|..||.++..+++.+..+++.....+ ...++.+...+.++...+.+|+++||.-+||.+.+.||.+||..+..++
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~ 164 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQE 164 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999999998865333 3447778888888888999999999999999999999999999998864
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.96 E-value=2.9e-10 Score=109.12 Aligned_cols=54 Identities=30% Similarity=0.554 Sum_probs=42.6
Q ss_pred CCCCCCcccccccccCC--------------CeeEecCCCCccCHhhHHHHH-----hcCCCCCCCcccccch
Q 001016 1114 GLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~--------------~~v~~LpCgH~fH~~Ci~~wl-----~~~~~CPiCrk~l~~m 1167 (1190)
..+.+|+||++++.... ..++.++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34678999999953321 234578999999999999999 4578999999988753
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.8e-10 Score=97.56 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=43.3
Q ss_pred CCCCCCcccccccccC---CCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
.....|+||++.+... ...+..++|||.||..|+..|+..+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3467899999985432 344577999999999999999999999999999875
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.90 E-value=4.8e-10 Score=98.37 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccC---CCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
..+..|+||++.+... ...+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999985432 3455789999999999999999999999999998864
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.89 E-value=8.8e-10 Score=105.87 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=30.5
Q ss_pred eeEecCCCCccCHhhHHHHHhcCCCCCCCcccc
Q 001016 1132 TVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1190)
Q Consensus 1132 ~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l 1164 (1190)
.++.++|||.||..||.+|+..+.+||+||+.+
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 467789999999999999999999999999985
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.88 E-value=6.5e-10 Score=95.28 Aligned_cols=52 Identities=27% Similarity=0.634 Sum_probs=43.5
Q ss_pred CCCCCccccccccc---CCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~---s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.+..||||++.+.. +.+.+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 45789999998543 23455778999999999999999999999999998864
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.84 E-value=1.3e-09 Score=95.02 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
....|+||++.+ . +++..+||||.||..|+..|+..+.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~-~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDP-S--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCC-C--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccc-c--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 467899999983 3 3467899999999999999999999999999998754
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=4.6e-10 Score=98.58 Aligned_cols=52 Identities=29% Similarity=0.575 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccchhHH
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMALY 1170 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m~~~ 1170 (1190)
.....|+||++. +.. ..+||||.||..|+..|+..+.+||+||+.+......
T Consensus 13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 346789999998 333 6789999999999999999999999999998765443
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4.5e-09 Score=95.79 Aligned_cols=52 Identities=29% Similarity=0.611 Sum_probs=42.5
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC---CCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~---~~CPiCrk~l~~ 1166 (1190)
....||||++.+.......+.++|||.||..|+..|+..+ .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4678999999844433346778999999999999999875 899999998753
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.3e-09 Score=93.70 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=41.5
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.....|+||++.+ . ..+.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4467899999984 2 23567999999999999999999999999999864
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=6.8e-09 Score=90.03 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=40.4
Q ss_pred CCCCccccc-ccccCCCeeEecCCCCccCHhhHHHHHh-cCCCCCCCcccccc
Q 001016 1116 ETNCPICCD-FLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle-~lf~s~~~v~~LpCgH~fH~~Ci~~wl~-~~~~CPiCrk~l~~ 1166 (1190)
+..||||++ .+.........++|||.||..|+..|+. ...+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 6433333446689999999999999954 45789999999864
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.71 E-value=1.7e-09 Score=105.56 Aligned_cols=50 Identities=26% Similarity=0.613 Sum_probs=1.0
Q ss_pred CCCCCccccccccc-------------C-CCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccc
Q 001016 1115 LETNCPICCDFLFT-------------S-SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1190)
Q Consensus 1115 ~~~~CpICle~lf~-------------s-~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l 1164 (1190)
.+++|+||++++.. . ...+..++|||.||.+||.+|+..+.+||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 45789999998432 1 11344469999999999999999999999999875
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=9.3e-09 Score=91.02 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=41.4
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
....||||++.+ . +++...+|||.||..||..|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYL-I--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCC-S--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHH-H--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 467899999984 3 245556999999999999999989999999998864
No 26
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=9.2e-09 Score=94.00 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=41.7
Q ss_pred CCCCCCCcccccccccCCCeeEecCCC-----CccCHhhHHHHHhcC--CCCCCCccccc
Q 001016 1113 KGLETNCPICCDFLFTSSATVRALPCG-----HFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1190)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCg-----H~fH~~Ci~~wl~~~--~~CPiCrk~l~ 1165 (1190)
...+..|+||+++ |..++.+ ++||+ |+||..||++|+..+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcc-ccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456789999998 5555555 68996 999999999998765 58999999875
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.6e-08 Score=91.42 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=40.7
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
.....||||++.+ . ++ ..+||||.||..|+..|+....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF-Q--NP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC-C--SE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh-c--Ce-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3466899999984 2 23 45899999999999999999999999999985
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.63 E-value=9.4e-09 Score=93.44 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=48.2
Q ss_pred CCCCCCcccccccccCCCeeEec--CCCCccCHhhHHHHH-hcCCCCCCCcccccchhHHHHhhhcc
Q 001016 1114 GLETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQAYT-CSHYICPICSKSLGDMALYEGFCSLF 1177 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~L--pCgH~fH~~Ci~~wl-~~~~~CPiCrk~l~~m~~~~~~lD~~ 1177 (1190)
..+.+||||+|++ +.. ....+ +|||.|+..|+..+. ..++.||+||+.+......|+.+|..
T Consensus 9 ~~~~~CpICle~~-~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~ 73 (78)
T 1e4u_A 9 EDPVECPLCMEPL-EID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQE 73 (78)
T ss_dssp CCCCBCTTTCCBC-CTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCCS
T ss_pred ccCCcCCccCccC-ccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCHH
Confidence 3467899999984 322 23344 599999999999976 45688999999999888888877764
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.63 E-value=1.1e-08 Score=101.81 Aligned_cols=47 Identities=30% Similarity=0.742 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
+..||||++.+ . + .+.+||||.||..|+..|+..+.+||+||+++..
T Consensus 53 ~~~C~iC~~~~-~--~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYF-I--E-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBC-S--S-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCccc-C--C-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999984 2 2 3568999999999999999999999999999864
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.59 E-value=1.6e-08 Score=98.37 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccC---CCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
..+..||||++.+.+. ++.+..++|||.||..||.+|+..+.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3467899999985332 3455789999999999999999999999999999864
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.58 E-value=2.1e-08 Score=89.42 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=40.4
Q ss_pred CCCCCcccccccccCCCeeEecC-CCCccCHhhHHHHHhcC--CCCCCCcccccchhH
Q 001016 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSH--YICPICSKSLGDMAL 1169 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CgH~fH~~Ci~~wl~~~--~~CPiCrk~l~~m~~ 1169 (1190)
.+..||||++.+ . ++ +.+| |||.||..||..|+..+ .+||+||+.+...+.
T Consensus 14 ~~~~C~IC~~~~-~--~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 14 DELLCLICKDIM-T--DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGGSCSSSCCCC-T--TC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCcCCChHH-h--CC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 467899999984 3 23 4488 99999999999999765 799999998664433
No 32
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.4e-08 Score=87.11 Aligned_cols=48 Identities=29% Similarity=0.718 Sum_probs=39.4
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh---cCCCCCCCccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPICSKSLG 1165 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~---~~~~CPiCrk~l~ 1165 (1190)
.....||||++. +. + ...++|||.||..|+..|+. .+.+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~-~~--~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDI-LQ--K-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSB-CS--S-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcc-cC--C-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 346789999998 33 2 34569999999999999996 4678999999875
No 33
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.6e-08 Score=86.53 Aligned_cols=48 Identities=27% Similarity=0.501 Sum_probs=39.3
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHH-hcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-CSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl-~~~~~CPiCrk~l~~ 1166 (1190)
....||||++.+ .. ++ .++|||.||..|+..|+ ..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~-~~--p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVL-CS--PK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEE-SS--CC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHh-cC--ee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 357899999984 32 33 37999999999999999 567899999998864
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.52 E-value=4.1e-08 Score=92.00 Aligned_cols=48 Identities=23% Similarity=0.618 Sum_probs=40.9
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...||||++. +. +++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChh-hC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 5689999998 43 355556999999999999999999999999998874
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.52 E-value=3.6e-08 Score=93.02 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC-CCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~-~~CPiCrk~l~~ 1166 (1190)
+..||||++.+ . +++..++|||.||..||..|+..+ .+||+||+++..
T Consensus 22 ~~~C~IC~~~~-~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKL-R--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBC-S--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccc-c--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 56799999984 3 355559999999999999999877 799999999853
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.49 E-value=6.2e-08 Score=92.29 Aligned_cols=49 Identities=20% Similarity=0.561 Sum_probs=41.9
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.+..||||++.+ . +++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~-~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF-I--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC-S--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHH-h--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 467899999984 3 356656999999999999999999999999999874
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.48 E-value=6.7e-08 Score=93.94 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccC---CCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.....|+||++.+... ......++|||.||..|+++|+..+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999984321 3345778999999999999999999999999999874
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.47 E-value=7.3e-08 Score=86.23 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-CCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-~~~CPiCrk~l~~ 1166 (1190)
.+..||||++.+ . ++ +.++|||.|+..||..|+.. +.+||+||+.+..
T Consensus 7 ~~~~C~IC~~~~-~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELM-K--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCC-S--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccc-c--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 467899999984 3 23 44699999999999999987 7899999999863
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.45 E-value=9.5e-08 Score=86.02 Aligned_cols=48 Identities=25% Similarity=0.561 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc------CCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~------~~~CPiCrk~l~~ 1166 (1190)
....||||++. +.. + ..+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 18 ~~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLEL-LKE--P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSC-CSS--C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChh-hCc--c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 46789999998 332 3 36899999999999999876 7889999998863
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.4e-07 Score=81.10 Aligned_cols=43 Identities=33% Similarity=0.792 Sum_probs=35.0
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh---cCCCCCCC
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPIC 1160 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~---~~~~CPiC 1160 (1190)
..+..||||++.+ . + .+.++|||.||..||..|+. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~-~--~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL-Q--K-PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC-S--S-CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchh-C--C-eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467899999983 3 2 34569999999999999997 46789998
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.43 E-value=9.9e-08 Score=97.57 Aligned_cols=48 Identities=35% Similarity=0.678 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-CCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-~~~CPiCrk~l~~ 1166 (1190)
...||||++. +. +++..++|||.||..||..|+.. +.+||+||+.+..
T Consensus 54 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDM-LK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChH-hh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4589999998 43 35666799999999999999987 7889999999853
No 42
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.42 E-value=5.2e-08 Score=87.06 Aligned_cols=48 Identities=31% Similarity=0.722 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-------CCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-------HYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-------~~~CPiCrk~l~~ 1166 (1190)
.+..||||++. |.. + +.+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~-~~~--p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLEL-LTE--P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEE-CSS--C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcc-cCC--e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 46789999998 432 2 34799999999999999876 6789999999864
No 43
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=85.17 Aligned_cols=48 Identities=35% Similarity=0.748 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc------CCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~------~~~CPiCrk~l~~ 1166 (1190)
....||||++.+ .. ...+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 18 ~~~~C~IC~~~~-~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELL-TQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCC-SS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCccc-CC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 467899999983 32 245799999999999999876 7899999998874
No 44
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=79.59 Aligned_cols=42 Identities=26% Similarity=0.877 Sum_probs=34.2
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHH---hcCCCCCCC
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT---CSHYICPIC 1160 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl---~~~~~CPiC 1160 (1190)
....|+||++.+ .. + +.++|||.||..|+..|+ ..+.+||+|
T Consensus 14 ~~~~C~IC~~~~-~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYL-KE--P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBC-SS--C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCccc-Cc--c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467899999984 32 2 448999999999999994 467899998
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=92.28 Aligned_cols=47 Identities=23% Similarity=0.561 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-CCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-~~~CPiCrk~l~~ 1166 (1190)
+..||||++.+ . + .+.+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 52 ~~~C~IC~~~~-~--~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV-F--R-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC-S--S-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHH-c--C-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46799999984 3 2 345799999999999999975 4599999999965
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.31 E-value=2.6e-07 Score=85.24 Aligned_cols=47 Identities=28% Similarity=0.621 Sum_probs=38.2
Q ss_pred CCCCCcccccccccCCCeeEecC-CCCccCHhhHHHHHhc--CCCCCCCccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCS--HYICPICSKSLG 1165 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CgH~fH~~Ci~~wl~~--~~~CPiCrk~l~ 1165 (1190)
.+..||||++.+ . ++ +.+| |||.|+..||..|+.. ..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~-~--~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIM-T--DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEEC-S--SC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhh-c--Cc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 467899999984 3 23 4578 9999999999999864 469999999973
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=3.9e-07 Score=82.18 Aligned_cols=48 Identities=29% Similarity=0.573 Sum_probs=39.2
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC--CCCCCCccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~--~~CPiCrk~l~ 1165 (1190)
...+|+||.+.+. .+. +-..|+|.||.+||..|++.+ .+||+||..+.
T Consensus 14 ~i~~C~IC~~~i~-~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLI-QGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCS-SSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcc-cCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4578999999854 332 334999999999999999877 89999998765
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.28 E-value=3.7e-07 Score=86.87 Aligned_cols=47 Identities=21% Similarity=0.637 Sum_probs=38.1
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC---CCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~---~~CPiCrk~l~~ 1166 (1190)
...||||++. +.. + ..+||||.||..|+..|+..+ .+||+||+.+..
T Consensus 21 ~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLEL-IKE--P-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCC-CSS--C-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChh-hcC--e-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4679999997 432 2 347999999999999999765 489999998863
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.28 E-value=1.6e-07 Score=90.32 Aligned_cols=47 Identities=32% Similarity=0.807 Sum_probs=39.0
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-CCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-~~~CPiCrk~l~~ 1166 (1190)
+..||||++.+. + .+.++|||.||..|+..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~---~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV---E-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS---S-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC---c-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 567999999843 2 345699999999999999866 6889999999864
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.25 E-value=2.2e-07 Score=80.99 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=41.3
Q ss_pred ccCCCCCCCcccccccccCCCeeE-ecCCCCc-cCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1111 REKGLETNCPICCDFLFTSSATVR-ALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1111 ~e~~~~~~CpICle~lf~s~~~v~-~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
.+...+..|+||++. + .+.+. .+||||. |...|+..|...+.+||+||+.+...
T Consensus 3 l~~~~~~~C~IC~~~-~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 3 LPLNAIEPCVICQGR-P--KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp --CGGGSCCTTTSSS-C--SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCCcCCCCcCCCC-C--CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 344567889999987 2 22232 2499999 78999999999889999999998653
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.22 E-value=5.3e-07 Score=87.37 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=46.2
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC-CCCCCCcccccchh-----HHHHhhhccccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGDMA-----LYEGFCSLFSGLFW 1182 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~-~~CPiCrk~l~~m~-----~~~~~lD~~~~~~w 1182 (1190)
....||||++.+ . ++ +.++|||.||..||..|+..+ .+||+||+.+.... ..-+.++.+....+
T Consensus 17 ~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~ 86 (118)
T 3hct_A 17 SKYECPICLMAL-R--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (118)
T ss_dssp GGGBCTTTCSBC-S--SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECS
T ss_pred CCCCCCcCChhh-c--Ce-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECC
Confidence 356899999884 2 23 457999999999999998765 49999999987532 12245555554444
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.20 E-value=6.5e-07 Score=90.75 Aligned_cols=47 Identities=26% Similarity=0.608 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC-CCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~-~~CPiCrk~l~~ 1166 (1190)
...||||++.+ . ++ ..+||||.||..||..|+... .+||+||..+..
T Consensus 78 ~~~C~IC~~~~-~--~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELV-Y--QP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBC-S--SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhh-c--CC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 46899999984 2 23 348999999999999999765 589999999874
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.20 E-value=6.3e-07 Score=86.29 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=39.4
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-CCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-~~~CPiCrk~l~~ 1166 (1190)
+..||||++.+ . +++ .++|||.||..|+..|+.. +.+||+||+.+..
T Consensus 23 ~~~C~IC~~~~-~--~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHIL-A--DPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBC-S--SEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHh-c--CcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 56899999984 2 333 4899999999999999986 7899999999864
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.16 E-value=4.2e-07 Score=79.00 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccCCCee-EecCCCCc-cCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1114 GLETNCPICCDFLFTSSATV-RALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v-~~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
.....|+||++.. .+.+ ..+||||. |...|+..|...+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 3467899999862 2222 23499998 99999999998889999999998754
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.09 E-value=1.4e-06 Score=100.49 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=41.2
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh-cCCCCCCCcccccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~-~~~~CPiCrk~l~~ 1166 (1190)
.....|+||++.+ ...+.+||||.||..|+..|+. .+.+||+||+.+..
T Consensus 330 ~~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3457899999883 2356789999999999999998 68899999998875
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=7.4e-07 Score=75.45 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=36.9
Q ss_pred CCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
......|+||++. |.. .+.+||||.|+..|+..| ..+||+||+.+.
T Consensus 3 e~~~~~C~IC~~~-~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAE-AKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSS-CBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cccCCCceEeCCc-cCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 3456789999998 432 356899999999999773 678999999875
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.04 E-value=1.9e-06 Score=79.14 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.+..||||++.| . ++ +.++|||.|...||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m-~--dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T--DP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBC-S--SE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchh-c--CC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 467899999874 2 23 457899999999999999989999999998863
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.02 E-value=9e-07 Score=79.11 Aligned_cols=45 Identities=31% Similarity=0.656 Sum_probs=37.2
Q ss_pred CCCCCcccccccccCCCeeEecCCCCc-cCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
.+..|+||++.+ .....+||||. |+..|+..| .+||+||+.+...
T Consensus 23 ~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSB----CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCC----CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 356899999873 23566899999 999999988 8899999998753
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.01 E-value=2.2e-06 Score=81.28 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.+..||||++.| . ++ +.+||||.|...||..|+..+.+||+||.++..
T Consensus 28 ~~~~CpI~~~~m-~--dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLM-T--DP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBC-S--SE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcc-c--CC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 467899999874 2 33 457899999999999999989999999998863
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.00 E-value=1.5e-06 Score=84.04 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=37.6
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
.+..||||++.+ . +++...+|||.|+..||..|+. ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~-~--~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNIL-R--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCC-S--SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHh-h--CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 367899999984 3 3444349999999999999987 88999999885
No 61
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.98 E-value=2.1e-06 Score=86.26 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=37.7
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC-CCCCCCcccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSL 1164 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~-~~CPiCrk~l 1164 (1190)
.+..||||++.+. ++ +.++|||.|+..||..|+... .+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~---~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLR---RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhc---Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4678999999843 33 447999999999999999765 4899999965
No 62
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.95 E-value=3.7e-06 Score=79.50 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCCCeeEecCCC-CccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCg-H~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.+..||||++.| . ++ +.++|| |.|...||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m-~--dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLM-C--DP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBC-S--SE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccc-c--CC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 467899999874 2 34 458999 999999999999889999999998863
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.87 E-value=3.2e-06 Score=95.41 Aligned_cols=54 Identities=22% Similarity=0.512 Sum_probs=40.4
Q ss_pred cCCCCCCCcccccccccCCC-e---eEecCCCCccCHhhHHHHHhcC-----------CCCCCCccccc
Q 001016 1112 EKGLETNCPICCDFLFTSSA-T---VRALPCGHFMHSDCFQAYTCSH-----------YICPICSKSLG 1165 (1190)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~-~---v~~LpCgH~fH~~Ci~~wl~~~-----------~~CPiCrk~l~ 1165 (1190)
+......|+||++.+..+++ + ..-.+|||.||..|+.+|++.. .+||.||+++.
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34467789999998554232 1 1235899999999999999642 56999999775
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.85 E-value=7.6e-06 Score=70.77 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=38.5
Q ss_pred cCCCCCCCcccccccccCCCeeEecCCC--C---ccCHhhHHHHHhc--CCCCCCCccccc
Q 001016 1112 EKGLETNCPICCDFLFTSSATVRALPCG--H---FMHSDCFQAYTCS--HYICPICSKSLG 1165 (1190)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~LpCg--H---~fH~~Ci~~wl~~--~~~CPiCrk~l~ 1165 (1190)
|......|.||++. .++++ ++||. | +||..|+.+|+.. +.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~---~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEE---LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEE---CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecC---CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 44567889999987 23334 58975 4 9999999999854 688999998763
No 65
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.78 E-value=6.6e-06 Score=89.57 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc-CCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~-~~~CPiCrk~l~~ 1166 (1190)
....||||++.| . ++| ++||||.|...||..|+.. +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~-~--dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELM-R--EPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBC-S--SEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHh-c--CCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356799999874 2 344 5889999999999999975 4559999999863
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=5.9e-06 Score=73.86 Aligned_cols=43 Identities=33% Similarity=0.712 Sum_probs=34.9
Q ss_pred CCCCcccccccccCCCeeEecCCCCc-cCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+||++. +. ....+||||. |+..|+.. ...||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 5679999987 32 3456899999 99999964 3789999999875
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=9.1e-06 Score=71.75 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=37.9
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCc-cCHhhHHHHHhcCCCCCCCcccccchh
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~m~ 1168 (1190)
.....|+||++. + ..+..+||||. |...|+.. ..+||+||..+...-
T Consensus 13 ~~~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNG-T---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSS-C---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcC-C---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 346789999986 2 34678999999 99999984 478999999987643
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.73 E-value=9.6e-06 Score=83.12 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=39.3
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC-CCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~-~~CPiCrk~l~~ 1166 (1190)
....||||++.+. +++ .++|||.|+..|+..|+..+ .+||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~---~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALR---EAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhc---CcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4578999999843 344 48999999999999998654 599999999875
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=1.4e-05 Score=74.35 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=39.6
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc--------CCCCCC--Cccc--ccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS--------HYICPI--CSKS--LGD 1166 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~--------~~~CPi--Crk~--l~~ 1166 (1190)
+...+|+||+++ +.....+...+|||.|+..|+..|+.. ..+||. |+.. +..
T Consensus 3 ~~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 3 SGSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp CSBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 346789999998 554444444589999999999998742 357999 9998 653
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.58 E-value=1.2e-05 Score=72.88 Aligned_cols=46 Identities=24% Similarity=0.652 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCCeeEecCCCCc-cCHhhHHHHHhcCCCCCCCcccccchhH
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAL 1169 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~m~~ 1169 (1190)
+..|+||++.. .....+||||. |...|+..| ..||+||+.+.....
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence 46799999872 24677899999 999999876 399999999986443
No 71
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=4.2e-05 Score=71.40 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=36.5
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC------CCCCC--Cccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH------YICPI--CSKS 1163 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~------~~CPi--Crk~ 1163 (1190)
.+..||||++. |. ++|....|||.|...||..|+..+ .+||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999987 43 355543599999999999998653 69999 9966
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.34 E-value=8.2e-05 Score=77.67 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC-CCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~-~~CPiCrk~l~~ 1166 (1190)
+..||||++.| . ++| ++||||.|...||..|+..+ .+||+|+.++..
T Consensus 106 ~f~CPI~~elm-~--DPV-~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELM-R--EPC-ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBC-S--SEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccCccccC-C--CCe-ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45699999874 3 344 46999999999999998763 579999998864
No 73
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.30 E-value=9e-05 Score=81.28 Aligned_cols=48 Identities=31% Similarity=0.646 Sum_probs=40.6
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC--CCCCC--Cccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPI--CSKSLG 1165 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~--~~CPi--Crk~l~ 1165 (1190)
.+..||||++.| .++|....|||.|...||..|+..+ .+||+ |++.+.
T Consensus 180 ~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 467899999984 4678878999999999999998754 57999 999875
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.20 E-value=5.9e-05 Score=86.20 Aligned_cols=44 Identities=32% Similarity=0.805 Sum_probs=36.6
Q ss_pred CCCCcccccccccCCCeeEecCCCCc-cCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~-fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
+..|+||++.+ . ....+||||. |+..|+..| ..||+||..+...
T Consensus 295 ~~~C~IC~~~~-~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKE-V---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSB-C---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcC-C---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 57899999873 2 3566799999 999999988 7899999998753
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.08 E-value=0.00023 Score=61.67 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=39.8
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...||||++.|- +++...+|||.|-..||.+|+..+.+||++++.+..
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 467999999842 455555999999999999999888899999998864
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.53 E-value=0.0013 Score=62.14 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=40.4
Q ss_pred CCcccccccccCCCeeEecCCCCccCHhhHHHHHh-cCCCCCCCcccccchhHH
Q 001016 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGDMALY 1170 (1190)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~-~~~~CPiCrk~l~~m~~~ 1170 (1190)
-|++|--++ ....+.+||+|.|..+|+..|.+ ...+||+|+.++.+.+..
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 488887652 33567889999999999999975 568899999999887653
No 77
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=96.38 E-value=0.017 Score=57.11 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhhHHHHHHhhhh
Q 001016 44 ILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHE 123 (1190)
Q Consensus 44 i~~~~~~HkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv~~v~~~~~~EH~ 123 (1190)
+|+|.+=|--+..-..+--.-.-..+- .+..+++.|..-+..--.-++.|-+-||+.|.-.|..|-..|..- .-|.
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tnF--s~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nv--Hsdn 83 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTNF--SNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNV--HSDN 83 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSC--SCCT
T ss_pred cceeeccHHHHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecc--cCcc
Confidence 567777776555544444333333333 556677777777766667789999999999999999985222111 1233
Q ss_pred hHHHHHHHHHHHHHhhhcCc-h--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhcCCHHHHHHHHHHHhc
Q 001016 124 GESVLFDQLFELLNSSMRNE-E--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1190)
Q Consensus 124 ~~~~lf~~l~~~l~~~~~~~-~--~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~i~ 194 (1190)
...+.+.-+..++..- .+. + .+..+|-..+.++-.....||..||+.-=|+|.++||.+|+.+|-.+-|+
T Consensus 84 kLsemL~L~~kG~~~v-K~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi~ 156 (160)
T 3u9j_A 84 KLSEMLSLFEKGLKNV-KNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIA 156 (160)
T ss_dssp THHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3444455555555443 211 2 56678888888888899999999999999999999999999998776553
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.41 E-value=0.0084 Score=65.18 Aligned_cols=46 Identities=30% Similarity=0.609 Sum_probs=34.1
Q ss_pred CCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcC--CCCCCCccccc
Q 001016 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~--~~CPiCrk~l~ 1165 (1190)
..|.||.+-+.. + .+-..|+|.||..|+..|++.+ .+||.|+....
T Consensus 181 ~~C~iC~~iv~~-g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLLIQ-G--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBCSS-C--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHHhC-C--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 458888776442 2 2233499999999999998764 58999998754
No 79
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=94.25 E-value=0.86 Score=45.31 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh-hhHH--hHHHH
Q 001016 293 PIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL-SFAQ--EHAEE 369 (1190)
Q Consensus 293 PId~l~~~HkALRrEL~~L~~~a~~~~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~-~me~--EH~~i 369 (1190)
-+|.+..=|--++.-...--+-+.... -.+-.++..|..-+..--..++.|-.-|++.|--.|..|- +.-. -|...
T Consensus 7 EvdvF~~PH~RMKqlvg~y~ekLS~tn-Fs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nvHsdnkL 85 (160)
T 3u9j_A 7 EVDVFTAPHWRMKQLVGLYCDKLSKTN-FSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKL 85 (160)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHHHCC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSCSCCTTH
T ss_pred ccceeeccHHHHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecccCcchH
Confidence 356666777666665555555555543 2233356555544444444567798999999999999885 1100 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhHh
Q 001016 370 EIQFDKLRCLIESIQSAGANSST-AEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSL 442 (1190)
Q Consensus 370 e~l~e~l~~ll~~l~~~~~~~~~-~~~~~eLa~~l~~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~~L~~~~l 442 (1190)
...+.-|...+... . +... ..+..+|...+++.......||..||++-=||+.++||.+|...|-.+-+
T Consensus 86 semL~L~~kG~~~v---K-~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi 155 (160)
T 3u9j_A 86 SEMLSLFEKGLKNV---K-NEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVI 155 (160)
T ss_dssp HHHHHHHHHHHHHC---C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---c-hHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 22233333333221 1 0001 35567888888888999999999999999999999999999998866544
No 80
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=92.90 E-value=0.019 Score=52.42 Aligned_cols=24 Identities=17% Similarity=-0.172 Sum_probs=0.0
Q ss_pred CCCCcccccchhHHHHhhhccccc
Q 001016 1157 CPICSKSLGDMALYEGFCSLFSGL 1180 (1190)
Q Consensus 1157 CPiCrk~l~~m~~~~~~lD~~~~~ 1180 (1190)
||+|.|++.||+.+|++||+.++.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~ 24 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQ 24 (79)
T ss_dssp ------------------------
T ss_pred CCcccccHHHHHHHHHHHHHHHHh
Confidence 899999999999999999998853
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.39 E-value=0.16 Score=47.49 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=37.9
Q ss_pred CCCCCcccccccccCCCeeEecCCC-CccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCg-H~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
+-.+|-.|... .+ ..+.|. |++...|+.-.++.+..||||++++..
T Consensus 27 G~~nCKsCWf~---~k---~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFE---NK---GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSC---CS---SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhccc---cC---CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 45789999844 32 245787 999999999999999999999999874
No 82
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.67 E-value=0.35 Score=44.22 Aligned_cols=41 Identities=20% Similarity=0.524 Sum_probs=24.3
Q ss_pred cccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCCccceEeccccc
Q 001016 1007 LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1190)
Q Consensus 1007 ~y~Cr~CHde~~dH~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc~~~fa~Y~C~~C~ 1064 (1190)
+|.|..|+... .....|..|+.+..+ |.. ||.. .|||+.|+
T Consensus 18 ~~~C~~C~~~~---------~~~afCPeCgq~Le~---lkA---CGA~--~yFC~~C~ 58 (81)
T 2jrp_A 18 TAHCETCAKDF---------SLQALCPDCRQPLQV---LKA---CGAV--DYFCQNGH 58 (81)
T ss_dssp EEECTTTCCEE---------EEEEECSSSCSCCCE---EEE---TTEE--EECCTTTT
T ss_pred ceECccccccC---------CCcccCcchhhHHHH---HHh---cCCc--CeeeccCC
Confidence 45566665531 224477777766533 444 3544 89988886
No 83
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.64 E-value=1.1 Score=42.11 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=30.3
Q ss_pred ccccccCC-------cccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCCccceEeccccc
Q 001016 999 LRAACCGK-------LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1190)
Q Consensus 999 l~~pcC~k-------~y~Cr~CHde~~dH~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc~~~fa~Y~C~~C~ 1064 (1190)
+.||.|+. +|.|..|+..- ...-.|..|+.+-.+-+.| | -+.|||..|+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~LevLkAC------G--AvdYFC~~ch 88 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPLQVLKAC------G--AVDYFCQHGH 88 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBCEEEEET------T--EEEEEETTTT
T ss_pred ccCccCCCcceecCCEEECccccchh---------hccccCcchhhHHHHHHHh------c--CcchhhccCC
Confidence 56777753 45566666531 3466777777664433332 3 4789999997
No 84
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.50 E-value=1.5 Score=42.06 Aligned_cols=73 Identities=21% Similarity=0.450 Sum_probs=40.9
Q ss_pred CCccccccCCcccccccc-c------------cccccccCCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh-
Q 001016 1087 LGVDFFHCMTCNCCLAKK-L------------VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC- 1152 (1190)
Q Consensus 1087 l~~~~fHC~~C~~C~s~~-l------------~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~- 1152 (1190)
-+++...|..|+.-+-.. + ..=.|.+ -..|.||.+.-...++-+.--.|...||..|+++-+.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~---C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~ 98 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIE---CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTT---TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhcccccccc---CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCC
Confidence 345777888876555222 1 1111221 2257888754111122222237889999999976443
Q ss_pred ---cCCCCCCCcc
Q 001016 1153 ---SHYICPICSK 1162 (1190)
Q Consensus 1153 ---~~~~CPiCrk 1162 (1190)
..-.||.|+.
T Consensus 99 ~P~~~W~C~~C~~ 111 (112)
T 3v43_A 99 MPKGMWICQICRP 111 (112)
T ss_dssp CCSSCCCCTTTSC
T ss_pred CCCCCeECCCCCC
Confidence 3467999985
No 85
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=69.92 E-value=0.72 Score=44.43 Aligned_cols=86 Identities=20% Similarity=0.474 Sum_probs=48.3
Q ss_pred CCCCccccCC------CCCccccccCCccccc-----cccc--------cccccccCCCCCCCcccccccccCCCeeEec
Q 001016 1076 PFCNLCRVGR------GLGVDFFHCMTCNCCL-----AKKL--------VDHKCREKGLETNCPICCDFLFTSSATVRAL 1136 (1190)
Q Consensus 1076 ~~CgiCrvg~------gl~~~~fHC~~C~~C~-----s~~l--------~~H~C~e~~~~~~CpICle~lf~s~~~v~~L 1136 (1190)
+.|+||.-|. |-+++...|+.|+.-+ .... ..=.|.+ -..|.||... ...+.-+.--
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~---C~~C~~C~~~-~~~~~ll~Cd 77 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIE---CKSCILCGTS-ENDDQLLFCD 77 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGG---GCCCTTTTCC-TTTTTEEECS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccc---cCccCccccc-CCCCceEEcC
Confidence 3566665543 3345788888887544 3321 1111221 1357888764 1222222223
Q ss_pred CCCCccCHhhHHHHHh----cCCCCCCCccccc
Q 001016 1137 PCGHFMHSDCFQAYTC----SHYICPICSKSLG 1165 (1190)
Q Consensus 1137 pCgH~fH~~Ci~~wl~----~~~~CPiCrk~l~ 1165 (1190)
.|...||..|+.+=+. ..-.||.|...+.
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhh
Confidence 8889999999985332 2466999976544
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.36 E-value=2 Score=40.80 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=28.1
Q ss_pred CCcccccccccCCCeeEecCCCCccCHhhHHHHHh----cCCCCCCCccc
Q 001016 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1190)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~----~~~~CPiCrk~ 1163 (1190)
.|.||... -....-+.--.|...||..|+++-+. ....||.|..-
T Consensus 56 ~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQS-GEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCC-SCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCcc-CCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46777754 11122222348899999999986443 34678888653
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=66.91 E-value=3 Score=38.52 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCeeEe-cCCCCccCHhhHHH-HH
Q 001016 1116 ETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQA-YT 1151 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-LpCgH~fH~~Ci~~-wl 1151 (1190)
+..|+||.+..+ ..++.. +.|+|.|...|+.. |.
T Consensus 3 e~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHHhc
Confidence 568999997522 233443 99999999999998 53
No 88
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=62.15 E-value=1.1 Score=42.84 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=27.8
Q ss_pred CCCCcccccccccCCCeeE-ecCCCCccCHhhHHHHHh--------cCCCCCCCcc
Q 001016 1116 ETNCPICCDFLFTSSATVR-ALPCGHFMHSDCFQAYTC--------SHYICPICSK 1162 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~-~LpCgH~fH~~Ci~~wl~--------~~~~CPiCrk 1162 (1190)
...|+.|.+. .+....++ ---|...||..|...... ..+.||.|+.
T Consensus 59 c~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 59 CGEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TCCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cCcccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3446666544 22223333 358999999999865421 2377999985
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.68 E-value=6.2 Score=39.70 Aligned_cols=90 Identities=14% Similarity=0.347 Sum_probs=52.3
Q ss_pred CCcccCCCCCccccCCC----CCccccccCCccccccccc-cccccccCCCCCCCcccccccccCCCeeEecCCCCccCH
Q 001016 1070 RVVYHCPFCNLCRVGRG----LGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHS 1144 (1190)
Q Consensus 1070 k~~yHC~~CgiCrvg~g----l~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~ 1144 (1190)
...++|--||.-..... ....+|+-.-|..|...-+ ..-.-.+.+.+..|.||.+. ++-+--=.|--.||.
T Consensus 12 ~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 12 HGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCK 87 (142)
T ss_dssp CCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCC----SSEEECSSSCCEEEH
T ss_pred cCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCC----CcEEeCCCCCCeeeH
Confidence 55667777776432100 0113344444555554222 22223456678999999864 332222378899999
Q ss_pred hhHHHHH-----------hcCCCCCCCccc
Q 001016 1145 DCFQAYT-----------CSHYICPICSKS 1163 (1190)
Q Consensus 1145 ~Ci~~wl-----------~~~~~CPiCrk~ 1163 (1190)
.|+..=+ ...-.||+|+-.
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 9999643 235679999943
No 90
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=59.48 E-value=4.5 Score=33.34 Aligned_cols=28 Identities=46% Similarity=0.927 Sum_probs=16.0
Q ss_pred cceEecccc-ccccCC----CCcccCCCCCccc
Q 001016 1055 MAKYYCGIC-KFFDDE----RVVYHCPFCNLCR 1082 (1190)
Q Consensus 1055 fa~Y~C~~C-~l~dd~----k~~yHC~~CgiCr 1082 (1190)
|+-|-|-.| +-|+++ -+-.+||+||+=-
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 356777777 345555 4567899998643
No 91
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=55.64 E-value=4.3 Score=41.13 Aligned_cols=39 Identities=26% Similarity=0.571 Sum_probs=25.2
Q ss_pred CCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
..|..|.+.+... +.+ +..-|..||..|+ +|-.|++.|.
T Consensus 66 ~~C~~C~~~I~~~-~~v-~~a~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPT-QVV-RRAQDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTT-SEE-EEETTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCC-cEE-EEcCCceEeeCCC--------cCCCCCCCCC
Confidence 4688888775432 222 1234788888885 6888888775
No 92
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.31 E-value=7.5 Score=38.49 Aligned_cols=69 Identities=16% Similarity=0.441 Sum_probs=43.3
Q ss_pred cccCCccccccccc-cccccccCCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHH-----------hcCCCCCC
Q 001016 1092 FHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----------CSHYICPI 1159 (1190)
Q Consensus 1092 fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl-----------~~~~~CPi 1159 (1190)
|....|..|...-+ ....-.+.+.+..|.||.+. ++-+--=.|-..||..|+..-+ ...-.|++
T Consensus 32 l~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~ 107 (129)
T 3ql9_A 32 LQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYI 107 (129)
T ss_dssp TCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTT
T ss_pred cCceeCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCC
Confidence 33455556654332 33344566778889999864 3322223688999999998641 23477999
Q ss_pred Ccccc
Q 001016 1160 CSKSL 1164 (1190)
Q Consensus 1160 Crk~l 1164 (1190)
|+-.-
T Consensus 108 C~~~p 112 (129)
T 3ql9_A 108 CHPEP 112 (129)
T ss_dssp TCCGG
T ss_pred cCCHH
Confidence 97543
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=54.30 E-value=4.8 Score=42.06 Aligned_cols=49 Identities=20% Similarity=0.569 Sum_probs=33.8
Q ss_pred CCCcccccccccCCCe---e-EecCCCCccCHhhHHH------HHh-----cCCCCCCCcccccc
Q 001016 1117 TNCPICCDFLFTSSAT---V-RALPCGHFMHSDCFQA------YTC-----SHYICPICSKSLGD 1166 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~---v-~~LpCgH~fH~~Ci~~------wl~-----~~~~CPiCrk~l~~ 1166 (1190)
..||||... +..++. . .--.|..-||..|+.- -+. ..|.||.|+..-+.
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 569999876 555441 2 2247889999999632 111 27999999987764
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=51.22 E-value=11 Score=34.72 Aligned_cols=34 Identities=18% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHH
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAY 1150 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~w 1150 (1190)
.+..|+||-. |+......-=-|+-.||..|+.+-
T Consensus 14 ~D~~C~VC~~--~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV--WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC--CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc--ccccceeccccccccccHhhcccc
Confidence 5788999974 444442222347899999999986
No 95
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.74 E-value=3.9 Score=35.08 Aligned_cols=49 Identities=22% Similarity=0.623 Sum_probs=33.0
Q ss_pred CCCCCCcccccccccCCC-eeEecCCCCccCHhhHHHHH-----hcCCCCCCCccc
Q 001016 1114 GLETNCPICCDFLFTSSA-TVRALPCGHFMHSDCFQAYT-----CSHYICPICSKS 1163 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~-~v~~LpCgH~fH~~Ci~~wl-----~~~~~CPiCrk~ 1163 (1190)
.....|+||... +.... -+.--.|..-||..|+.--. ...+.||.|+..
T Consensus 4 ~e~~~C~~C~~~-~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGES-YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCC-CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCc-cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999877 43222 23334788999999985421 256999999754
No 96
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.67 E-value=12 Score=32.50 Aligned_cols=43 Identities=21% Similarity=0.556 Sum_probs=31.3
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
....|+-|.+.++..+..+..+ |..||..|+ +|-.|+++|.+.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSN--GELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEET--TEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeC--ccEeccccC--------eECCCCCCCCCC
Confidence 4577999999876444433344 889999885 688999988754
No 97
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=45.14 E-value=13 Score=32.47 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=31.0
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhc----CCCCCCCccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS----HYICPICSKS 1163 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~----~~~CPiCrk~ 1163 (1190)
...|.||.+. ++-+.--.|...||..|++..+.. .-.||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999753 332222378899999999877643 4679999754
No 98
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=44.57 E-value=1.1e+02 Score=35.32 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhhHHHH-----------HHh-hhhhHHHHHHHHHHHHHhhh
Q 001016 73 GGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIART-----------YSL-EHEGESVLFDQLFELLNSSM 140 (1190)
Q Consensus 73 gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv~~v~~~-----------~~~-EH~~~~~lf~~l~~~l~~~~ 140 (1190)
-|...++++..+++.+...+| +=..--|+++..-|+..... +.. .-..-+.+++.|...|..+.
T Consensus 45 ~~~~~~~~~q~~le~~~~~lr----~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~ 120 (369)
T 3rfy_A 45 IDNKAIREVQKPLEDITDSLK----IAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDML 120 (369)
T ss_dssp CCCHHHHHHHHHHHTHHHHTT----SCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhc----cccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 466688888888877766554 11122388887666332222 222 22334568888888888885
Q ss_pred cCc-----h---hHHHHHHHHHH
Q 001016 141 RNE-----E---SYRRELASCTG 155 (1190)
Q Consensus 141 ~~~-----~---~~~~eLa~~l~ 155 (1190)
... + ..++++-..|+
T Consensus 121 ~~~~~~d~~~~~~~~~~~l~~v~ 143 (369)
T 3rfy_A 121 KIVEDRKRDAVAPKQKEILKYVG 143 (369)
T ss_dssp CCCSSCCCSSSGGGHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH
Confidence 432 2 44566666666
No 99
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=44.24 E-value=5.3 Score=40.22 Aligned_cols=42 Identities=19% Similarity=0.560 Sum_probs=26.2
Q ss_pred CCCccccCCCCCccccccCCccccccccc-cccccccCCCCCCCcccccc
Q 001016 1077 FCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDF 1125 (1190)
Q Consensus 1077 ~CgiCrvg~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~ 1125 (1190)
+|+||..-. ..++.|||+.||+|---.- +--- -..|-+|+.-
T Consensus 85 ~C~~C~l~d-~~k~~yHC~~CgiCR~G~~~~ffH------C~~C~~C~s~ 127 (143)
T 2dkt_A 85 YCSICHLFD-KDKRQYHCESCGICRIGPKEDFFH------CLKCNLCLTT 127 (143)
T ss_dssp ECSSSCCEE-CSSSEEEETTTTEEEESCGGGEEE------ETTTTEEEEG
T ss_pred Eeceeeccc-CCCceecCCCCCceeccCCcCcEE------CCcCCeeecc
Confidence 355666642 3568999999999975432 1111 2467778753
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=43.47 E-value=6.3 Score=34.83 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=32.3
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh----cCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~----~~~~CPiCrk~l~ 1165 (1190)
...|+||... .....-+.-=.|.-.||..|+..-.. ..+.||.|+..+.
T Consensus 18 ~~~C~~C~~~-~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKP-DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBC-CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCC-CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4569999876 22212222237889999999975432 4688999987553
No 101
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.75 E-value=13 Score=31.82 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCCCccccccccc--CCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+-|.+.+.. ....+. .-|..||.+|+ +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCCC
Confidence 4679999998764 223333 35899999885 78899998863
No 102
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.75 E-value=13 Score=31.86 Aligned_cols=40 Identities=30% Similarity=0.671 Sum_probs=28.5
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
...|+.|.+.+......+..+ |..||..|+ +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL--DRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS--SSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEEC--CCeEcccCC--------cccccCCcCC
Confidence 457899988866543333333 789999885 6888998884
No 103
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.39 E-value=12 Score=31.93 Aligned_cols=40 Identities=25% Similarity=0.695 Sum_probs=29.0
Q ss_pred CCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
..|+.|.+.+......+..+ |..||..|+ +|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYK--GSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEET--TEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEEC--cCeecccCC--------cccccCCccCC
Confidence 56999998866443434443 789998885 68899998865
No 104
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.59 E-value=11 Score=32.24 Aligned_cols=41 Identities=27% Similarity=0.710 Sum_probs=29.2
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+.|...+...+..+ ..-|..||.+|+ +|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE--EECccccCcccC--------eECCCCCcCCC
Confidence 357999998865433322 334889999885 68889988865
No 105
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=38.14 E-value=13 Score=30.42 Aligned_cols=26 Identities=35% Similarity=1.080 Sum_probs=18.2
Q ss_pred cceEecccccc-ccC---------C-CCcccCCCCCc
Q 001016 1055 MAKYYCGICKF-FDD---------E-RVVYHCPFCNL 1080 (1190)
Q Consensus 1055 fa~Y~C~~C~l-~dd---------~-k~~yHC~~Cgi 1080 (1190)
|.+|-|.+|.+ ||. + .+-|.||.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 67899999987 552 2 34577888874
No 106
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=37.68 E-value=24 Score=40.87 Aligned_cols=86 Identities=22% Similarity=0.460 Sum_probs=56.5
Q ss_pred ccCCCCCccccCCCCCccccccCCccccccccc-cccccccCCCCCCCcccccccccCCCeeEec--CCCCccCHhhHHH
Q 001016 1073 YHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQA 1149 (1190)
Q Consensus 1073 yHC~~CgiCrvg~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCgH~fH~~Ci~~ 1149 (1190)
++|-.||--.+- .-...|...-|..|...-+ ......+.+.+..|-||.+. ++-+.-- .|...|+..||+.
T Consensus 51 ~~C~~CG~~~~~--~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 51 DICICCGSLQVH--TQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp GSBTTTCCSCCC--SBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHH
T ss_pred ceeCCCCCcCcc--ccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHH
Confidence 456666643321 1234556667777775444 55666788889999999864 3333333 7999999999999
Q ss_pred HHh----------cCCCCCCCcccc
Q 001016 1150 YTC----------SHYICPICSKSL 1164 (1190)
Q Consensus 1150 wl~----------~~~~CPiCrk~l 1164 (1190)
.+. ..-.|=+|.-.-
T Consensus 125 n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 125 LVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp HTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred hcChhHHHHhhccCCceEEEcCCcc
Confidence 872 345688887553
No 107
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.44 E-value=17 Score=31.47 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=30.1
Q ss_pred CCCCccccccccc---CCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~---s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+-|...+.. ....+..+ |..||..|+ +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCcccC--------EehhcCCCCCC
Confidence 4579999988765 33444444 789999885 68999999864
No 108
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=37.39 E-value=11 Score=28.14 Aligned_cols=29 Identities=28% Similarity=0.734 Sum_probs=19.9
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhH
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCF 1147 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci 1147 (1190)
...|+.|...+|.. +.+. .=|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 45789998886654 3333 34788998885
No 109
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.05 E-value=15 Score=31.92 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=29.8
Q ss_pred CCCCccccccccc--CCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+.|...+.. ..+.+.. -|..||.+|+ +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCC
Confidence 3569999998764 3343433 4889999985 68899998863
No 110
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.13 E-value=21 Score=31.30 Aligned_cols=41 Identities=27% Similarity=0.694 Sum_probs=29.1
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+.|.+.+......+..+ |..||..|+ +|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK--GTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS--SCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEEC--ccccccccC--------chhhCCCccCC
Confidence 357999998865433333333 789998885 68889988865
No 111
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=35.57 E-value=3.1e+02 Score=26.38 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccc----hhhHHHhhhhHHHHHHhhh
Q 001016 47 FLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVI----FPALDIRVKNIARTYSLEH 122 (1190)
Q Consensus 47 ~~~~HkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI----~PaLd~Rv~~v~~~~~~EH 122 (1190)
+=-=||-|=.-+..|..+ +.. ++ ...+..-+.+|.+.-.+|=..|..+. +|.++.. .
T Consensus 19 ID~qHk~L~~lin~l~~a---~~~--~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H-----------~ 79 (136)
T 3agt_A 19 IDTQHKRLVDYINDLYRA---ARR--RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRH-----------K 79 (136)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHT--TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHH---HHc--Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH-----------H
Confidence 334577666666655443 333 33 45667778888999999999888753 5544332 3
Q ss_pred hhHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHh
Q 001016 123 EGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLI 177 (1190)
Q Consensus 123 ~~~~~lf~~l~~~l~~~~~~~~~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~ 177 (1190)
+.|+..++.+......+...+..+..+|..++ ..-|..|...+=...-+.+.
T Consensus 80 ~~H~~f~~~v~~l~~~~~~g~~~~~~~l~~~L---~~Wl~~HI~~~D~~~~~~l~ 131 (136)
T 3agt_A 80 EIHRRFVETVLKWEKQLAAGDPEVVMTTLRGL---VDWLVNHIMKEDKKYEAYLR 131 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH---HHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH---HHHHHHHhHHHhHHHHHHHH
Confidence 45666777777777777554434455555554 57888999888777666553
No 112
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.49 E-value=16 Score=30.91 Aligned_cols=43 Identities=21% Similarity=0.565 Sum_probs=30.7
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
....|+.|...+......+.. =|..||..|+ +|-.|++++.+.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 356799999886544322233 3788999987 688999998764
No 113
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.15 E-value=11 Score=27.93 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=14.0
Q ss_pred CCCCCCCcccccchhHH
Q 001016 1154 HYICPICSKSLGDMALY 1170 (1190)
Q Consensus 1154 ~~~CPiCrk~l~~m~~~ 1170 (1190)
+++||+|+..+.|++.+
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 56899999999987653
No 114
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.62 E-value=21 Score=30.39 Aligned_cols=41 Identities=27% Similarity=0.802 Sum_probs=29.7
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
....|+.|.+.+.. +.+..+ |..||.+|+ +|-.|+++|.+.
T Consensus 4 ~~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG--RVIKAM--NNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS--CCEEET--TEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc--eEEEEC--cccccccCC--------EeCCCCCcCCCC
Confidence 34679999988652 333333 789999886 688999988764
No 115
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.97 E-value=18 Score=30.64 Aligned_cols=14 Identities=43% Similarity=1.201 Sum_probs=9.3
Q ss_pred cceEecccccc-ccC
Q 001016 1055 MAKYYCGICKF-FDD 1068 (1190)
Q Consensus 1055 fa~Y~C~~C~l-~dd 1068 (1190)
|.+|.|.+|.+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 46788888865 443
No 116
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.21 E-value=19 Score=32.03 Aligned_cols=14 Identities=29% Similarity=0.964 Sum_probs=10.3
Q ss_pred ccceEecccccc-cc
Q 001016 1054 SMAKYYCGICKF-FD 1067 (1190)
Q Consensus 1054 ~fa~Y~C~~C~l-~d 1067 (1190)
.|.+|.|.+|.+ ||
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 577888888875 44
No 117
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=32.01 E-value=3.5e+02 Score=25.96 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhhhhccccch----hhhhhhhhhhHHhHHHH
Q 001016 294 IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVI----FPAVDVELSFAQEHAEE 369 (1190)
Q Consensus 294 Id~l~~~HkALRrEL~~L~~~a~~~~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevl----FPaL~~r~~me~EH~~i 369 (1190)
+..+=.-|+.|=.-+++|.+.... ++ ...+..-+.+|.+....|=..|+.++ ||.++.+. +++
T Consensus 16 ~~~ID~qHk~L~~lin~l~~a~~~----~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H~------~~H 82 (136)
T 3agt_A 16 LPSIDTQHKRLVDYINDLYRAARR----RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRHK------EIH 82 (136)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHT----TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc----Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH------HHH
Confidence 344445788887777777766543 22 45566677888899999999998754 67665443 344
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 001016 370 EIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARR 427 (1190)
Q Consensus 370 e~l~e~l~~ll~~l~~~~~~~~~~~~~~eLa~~l~~L~~~L~~Hf~~EE~qvfPLl~~ 427 (1190)
+..++.+..+...+.. +. ..+..+| +.-|..-|..|...+-...-+.+.+
T Consensus 83 ~~f~~~v~~l~~~~~~-g~----~~~~~~l---~~~L~~Wl~~HI~~~D~~~~~~l~~ 132 (136)
T 3agt_A 83 RRFVETVLKWEKQLAA-GD----PEVVMTT---LRGLVDWLVNHIMKEDKKYEAYLRE 132 (136)
T ss_dssp HHHHHHHHHHHHHHTT-CC----HHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CC----hHHHHHH---HHHHHHHHHHHhHHHhHHHHHHHHH
Confidence 4455555555554432 21 1233333 4446778999999998888777644
No 118
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.94 E-value=24 Score=32.18 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
.-.|..|...| .+. ... ..=|..|...|+.+ .....|..|.+.|.
T Consensus 33 CF~C~~C~~~L-~~~-~~~-~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPL-ANE-TFV-AKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCT-TSS-CCE-EETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CCcccccCCCC-CcC-eeE-CcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 45677777764 222 111 22366677777632 23567888888886
No 119
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.64 E-value=23 Score=32.43 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=10.4
Q ss_pred ccceEecccccc-ccC
Q 001016 1054 SMAKYYCGICKF-FDD 1068 (1190)
Q Consensus 1054 ~fa~Y~C~~C~l-~dd 1068 (1190)
.+.+|.|.+|.+ ||.
T Consensus 24 em~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCCEEEETTTCCEEET
T ss_pred CcceEEeCCCCEEEcC
Confidence 467888888875 453
No 120
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=31.35 E-value=22 Score=31.63 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=11.9
Q ss_pred ceEeccccccc-c-CCCCcccCCCCCc
Q 001016 1056 AKYYCGICKFF-D-DERVVYHCPFCNL 1080 (1190)
Q Consensus 1056 a~Y~C~~C~l~-d-d~k~~yHC~~Cgi 1080 (1190)
-.|.|..|..- + ++.+..+|+.||-
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCc
Confidence 34555555442 1 1234445666663
No 121
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=30.76 E-value=17 Score=34.30 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHH
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT 1151 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl 1151 (1190)
..+..|.||.+. -+..+-+.=-.|+..||..|+...+
T Consensus 5 ~~~~~C~~C~~~-g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSP-GDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCC-CCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCC-CCCcCCeECCCCCCCcChHHhCCcc
Confidence 357789999875 1111113335899999999998764
No 122
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=29.74 E-value=9.6 Score=33.25 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=29.9
Q ss_pred CCCCCcccccccccCCCeeEec-CCCCccCHhhHHH----H--Hh----cCCCCCCCcc
Q 001016 1115 LETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQA----Y--TC----SHYICPICSK 1162 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L-pCgH~fH~~Ci~~----w--l~----~~~~CPiCrk 1162 (1190)
....|++|..+......-+.-- .|.--||..|+.- + +. ..+.||.|.+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 4568999999843333333334 7899999999731 1 11 2677988863
No 123
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.70 E-value=28 Score=28.29 Aligned_cols=45 Identities=18% Similarity=0.502 Sum_probs=28.5
Q ss_pred CCcccccccccCCCeeEecCCCCccCHhhHHHHHh----cCCCCCCCccc
Q 001016 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1190)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~----~~~~CPiCrk~ 1163 (1190)
.|.||... -..++-+.--.|.-.||..|++.=+. ....||.|+..
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888764 22222222237889999999975332 34669999753
No 124
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.43 E-value=29 Score=32.99 Aligned_cols=40 Identities=25% Similarity=0.538 Sum_probs=29.3
Q ss_pred CCCCcccccccccCCCeeEecCCCCccC--HhhHHHHHhcCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMH--SDCFQAYTCSHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH--~~Ci~~wl~~~~~CPiCrk~l~ 1165 (1190)
...|+.|...+......+.. -|..|| ..| ++|-.|+++|.
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~~~C--------F~C~~C~~~l~ 104 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 104 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEE--TTEEEESSTTT--------SBCTTTCCBCT
T ss_pred CccCcccCCcCCcCceEEEC--CCCEeeCCCCC--------cCcCCCCCccC
Confidence 45799999986543333433 489999 888 46889999887
No 125
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.34 E-value=20 Score=33.23 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=11.7
Q ss_pred CCccceEecccccc-ccC
Q 001016 1052 GLSMAKYYCGICKF-FDD 1068 (1190)
Q Consensus 1052 ~~~fa~Y~C~~C~l-~dd 1068 (1190)
+..|.+|.|.+|.+ ||.
T Consensus 30 ~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDE 47 (87)
T ss_dssp --CCCEEEETTTTEEEET
T ss_pred ccCCceEECCCCCeEecC
Confidence 45688999999975 554
No 126
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.37 E-value=30 Score=30.39 Aligned_cols=41 Identities=27% Similarity=0.572 Sum_probs=28.2
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+.|...+......+. .=|..||..|+ +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccCC
Confidence 3468999888653333222 23789999885 68889998874
No 127
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.33 E-value=26 Score=30.83 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
....|+-|.+.+. .+.+ ..-|..||.+|| +|-.|+++|...
T Consensus 14 ~~~~C~~C~~~I~--~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID--EQPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC--SCCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEec--ceEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 3467999998876 2333 344889999885 799999998753
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.29 E-value=27 Score=30.27 Aligned_cols=41 Identities=29% Similarity=0.655 Sum_probs=30.1
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
....|+.|.+.++. .+.+. .-|..||..|+ +|..|+++|..
T Consensus 8 ~~~~C~~C~~~I~~-~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYF-AEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCT-TTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeEC-CeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 34679999998653 33344 34889999885 69999999874
No 129
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.49 E-value=30 Score=31.13 Aligned_cols=42 Identities=17% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
......|+.|...+. .+.+. .-|..||.+|| +|-.|++.|.+
T Consensus 22 ~~~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIR--GPFLV--ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCC--SCEEE--ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEec--ceEEE--ECCccccccCC--------ccCCCCCCCCC
Confidence 344567999999863 33333 34899999885 78899998875
No 130
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.10 E-value=17 Score=30.59 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+.|.+.+. .+. +..-|..||.+|+ +|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~--~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE--GRV--VNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC--SCE--ECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec--ceE--EEECccccccCcC--------EECCCCCCCCC
Confidence 356999998875 232 3345889999885 68899998864
No 131
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.82 E-value=27 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=12.3
Q ss_pred eEecccccc-ccCCCCcc-cCCCCCcc
Q 001016 1057 KYYCGICKF-FDDERVVY-HCPFCNLC 1081 (1190)
Q Consensus 1057 ~Y~C~~C~l-~dd~k~~y-HC~~CgiC 1081 (1190)
.|.|..|.. |.-+...+ .||.||--
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 444444432 22234456 67777744
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.62 E-value=19 Score=31.18 Aligned_cols=38 Identities=32% Similarity=0.734 Sum_probs=23.8
Q ss_pred CCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.|+.|.+.+.. .+.+..+ |..||..|+ +|..|+++|.+
T Consensus 2 ~C~~C~~~I~~-~~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYF-AERVTSL--GKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCG-GGEEEET--TEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEEC-ceEEEEC--CccccCCCC--------CccccCccCCC
Confidence 37777776542 2334333 777887764 57778877765
No 133
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.31 E-value=32 Score=30.50 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=31.0
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccch
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~m 1167 (1190)
.....|+.|...++.. +.+. .-|..||..|| +|-.|++.|...
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 4567899999986543 3333 34889999985 688899988753
No 134
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=26.00 E-value=15 Score=32.24 Aligned_cols=49 Identities=18% Similarity=0.488 Sum_probs=32.1
Q ss_pred CCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHH---HhcCCCCCCCccc
Q 001016 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAY---TCSHYICPICSKS 1163 (1190)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~w---l~~~~~CPiCrk~ 1163 (1190)
......| ||... +....-+.--.|.--||..|+.-- +...+.||.|+.+
T Consensus 16 ~~~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 3455678 99876 332222333479999999998542 2356899999864
No 135
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.99 E-value=10 Score=35.96 Aligned_cols=49 Identities=18% Similarity=0.492 Sum_probs=32.4
Q ss_pred CCCCcccccccccCCCeeEe-c-CCCCccCHhhHHH----HH------hcCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRA-L-PCGHFMHSDCFQA----YT------CSHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-L-pCgH~fH~~Ci~~----wl------~~~~~CPiCrk~l~ 1165 (1190)
...|+||..+ +.+....+. = .|.--||..|+.- .- ...+.||.|++...
T Consensus 3 ~~~C~iC~~p-~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSE-VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSB-CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCc-cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4579999988 433333333 2 6888999999741 11 15789999986543
No 136
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.86 E-value=20 Score=41.46 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=21.6
Q ss_pred cccccccccccCCcccCcccccccCCCCCCccccceeeccccCcc
Q 001016 994 KRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1038 (1190)
Q Consensus 994 ~r~ckl~~pcC~k~y~Cr~CHde~~dH~~~r~~~~~~~C~~C~~~ 1038 (1190)
+|+....|-+||+. +....||+-. -.+|..|...
T Consensus 46 ~~~~e~~C~~CG~~-------~~~~~HPl~~----v~lC~~Ck~~ 79 (386)
T 2pv0_B 46 QRNIEDICICCGSL-------QVHTQHPLFE----GGICAPCKDK 79 (386)
T ss_dssp CCCGGGSBTTTCCS-------CCCSBCSSBS----SBCCHHHHHH
T ss_pred cCcccceeCCCCCc-------CccccCCCcC----cchhhHHHHH
Confidence 34455788888874 4466787765 5666666543
No 137
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.73 E-value=28 Score=29.44 Aligned_cols=14 Identities=43% Similarity=1.215 Sum_probs=10.4
Q ss_pred cceEecccccc-ccC
Q 001016 1055 MAKYYCGICKF-FDD 1068 (1190)
Q Consensus 1055 fa~Y~C~~C~l-~dd 1068 (1190)
|.+|-|.+|.+ ||.
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 57889999976 554
No 138
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.21 E-value=36 Score=28.82 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=28.5
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|+-|.+.+.. +.+.. -|..||.+|+ +|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC--------EECCCCCCCCC
Confidence 4579999988753 33444 3789999886 68889998863
No 139
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.87 E-value=26 Score=33.56 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=4.1
Q ss_pred CCccCHhh
Q 001016 1139 GHFMHSDC 1146 (1190)
Q Consensus 1139 gH~fH~~C 1146 (1190)
|..||..|
T Consensus 29 ~~~~H~~C 36 (123)
T 2l3k_A 29 DKVYHLEC 36 (123)
T ss_dssp SCCCCTTT
T ss_pred Cccccccc
Confidence 45555554
No 140
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=24.61 E-value=38 Score=28.85 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=31.9
Q ss_pred CCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHH----hcCCCCCCCccc
Q 001016 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT----CSHYICPICSKS 1163 (1190)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl----~~~~~CPiCrk~ 1163 (1190)
...+..|.||.+. ++-+.--.|.-.||..|+..=+ ...-.||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 2322223788899999998743 235679999763
No 141
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=39 Score=29.90 Aligned_cols=41 Identities=27% Similarity=0.508 Sum_probs=30.2
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
....|+-|.+.++.. +.+..+ |..||.+|| +|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF--------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF--------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--CcccccccC--------CcCcCCCCcCC
Confidence 456799999986533 334444 889999885 68899998863
No 142
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.10 E-value=27 Score=32.71 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=7.0
Q ss_pred CCcccCCCCCccccC
Q 001016 1070 RVVYHCPFCNLCRVG 1084 (1190)
Q Consensus 1070 k~~yHC~~CgiCrvg 1084 (1190)
-+|+||..||.--.|
T Consensus 52 ~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 52 AGIWTCSCCKKTVAG 66 (92)
T ss_dssp TTEEECTTTCCEEEC
T ss_pred cceEEcCCCCCEEeC
Confidence 345555555543333
No 143
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.76 E-value=21 Score=32.76 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=19.5
Q ss_pred ceEeccccc---cccCCCCcccCCCCCccccCC
Q 001016 1056 AKYYCGICK---FFDDERVVYHCPFCNLCRVGR 1085 (1190)
Q Consensus 1056 a~Y~C~~C~---l~dd~k~~yHC~~CgiCrvg~ 1085 (1190)
++|.|+-|. +|+..-++.+|++||---.|+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 355555553 344447888899998776664
No 144
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=23.61 E-value=55 Score=37.67 Aligned_cols=47 Identities=19% Similarity=0.569 Sum_probs=32.3
Q ss_pred CCCCcccccccccCCCeeEecCCCCc--cCHhhHHHHHh--cCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHF--MHSDCFQAYTC--SHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~--fH~~Ci~~wl~--~~~~CPiCrk~l~ 1165 (1190)
...|||=...| ..+++...|.|. |-..=|-.+.. ....||+|.+.+.
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 46799877663 458888999986 44443433322 3577999999884
No 145
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.55 E-value=37 Score=29.72 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=26.8
Q ss_pred CCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
..|+.|.+.+. ...+ ..-|..||.+|+ +|-.|++.|.+
T Consensus 16 ~~C~~C~~~I~--~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT--GPFM--VAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC--SCCB--CCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC--ceEE--EECCceeccccC--------CccCCCCccCC
Confidence 46888888865 2222 234788998875 68889988864
No 146
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=23.02 E-value=90 Score=28.01 Aligned_cols=72 Identities=24% Similarity=0.601 Sum_probs=40.3
Q ss_pred CCCCCcccccccCCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCCc
Q 001016 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1190)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~ckl~~pcC~k~y~Cr~CHde~~dH~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc~~~ 1054 (1190)
+.+|+|.++ -|.|-+.+-.-+|+-| .|..|..... ...-++|..|....- ..|..|-=-...
T Consensus 3 ~~~~~~~~~-----~c~~c~~~~~W~C~~C----~C~vC~~~~d-------~~~ll~CD~C~~~yH--~~Cl~PpL~~~P 64 (77)
T 3shb_A 3 LGSPEFSGP-----SCKHCKDDVNRLCRVC----ACHLCGGRQD-------PDKQLMCDECDMAFH--IYCLDPPLSSVP 64 (77)
T ss_dssp ------CCC-----SCTTTTTCTTSCCTTT----SBTTTCCCSC-------GGGEEECTTTCCEEE--TTTSSSCCSSCC
T ss_pred CCCcccCCc-----cccccCCCCCCCCCCC----cCCccCCCCC-------CcceeEeCCCCCccC--cccCCCcccCCC
Confidence 345666543 6999998888888888 3888876532 245788998876521 133322101233
Q ss_pred cce-Eeccccc
Q 001016 1055 MAK-YYCGICK 1064 (1190)
Q Consensus 1055 fa~-Y~C~~C~ 1064 (1190)
-+. +||..|+
T Consensus 65 ~g~~W~C~~C~ 75 (77)
T 3shb_A 65 SEDEWYCPECR 75 (77)
T ss_dssp SSSCCCCTTTC
T ss_pred CCCceECcCcc
Confidence 445 7777764
No 147
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=23.02 E-value=46 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCC-CCCCC
Q 001016 234 LRQVIFAWMEGV-KVSDK 250 (1190)
Q Consensus 234 l~~~~~~W~~~~-~~~~~ 250 (1190)
||+++-+||+++ +++.+
T Consensus 2 lqellgqwlkdggpssgr 19 (26)
T 1rij_A 2 LQELLGQWLKDGGPSSGR 19 (26)
T ss_dssp HHHHHHHHHHTTGGGSSS
T ss_pred HHHHHHHHHHcCCCCCCC
Confidence 799999999944 34433
No 148
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.97 E-value=46 Score=27.86 Aligned_cols=11 Identities=36% Similarity=1.138 Sum_probs=8.0
Q ss_pred cceEecccccc
Q 001016 1055 MAKYYCGICKF 1065 (1190)
Q Consensus 1055 fa~Y~C~~C~l 1065 (1190)
|.+|.|.+|.+
T Consensus 1 m~~y~C~~CGy 11 (52)
T 1e8j_A 1 MDIYVCTVCGY 11 (52)
T ss_dssp CCCEECSSSCC
T ss_pred CCcEEeCCCCe
Confidence 46788888865
No 149
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=22.53 E-value=72 Score=26.20 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=28.7
Q ss_pred CCCcccccccccCCCeeEe-c-CCCCccCHhhHHH----HHhcCCCCCCCc
Q 001016 1117 TNCPICCDFLFTSSATVRA-L-PCGHFMHSDCFQA----YTCSHYICPICS 1161 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~-L-pCgH~fH~~Ci~~----wl~~~~~CPiCr 1161 (1190)
-.|.||..+ +..+...+. - .|.--||..|+.- -....+.||.|+
T Consensus 3 c~cc~C~~p-~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRP-CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCC-CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCc-cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 358899887 433332222 3 5888999999642 124689999996
No 150
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=22.48 E-value=60 Score=37.26 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=32.1
Q ss_pred CCCCcccccccccCCCeeEecCCCCc--cCHhhHHHHHh--cCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHF--MHSDCFQAYTC--SHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~--fH~~Ci~~wl~--~~~~CPiCrk~l~ 1165 (1190)
...|||=...| ..+++...|.|. |-..=+-++.. ....||+|.+.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45699877663 457888999976 44444433332 3477999999985
No 151
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=22.47 E-value=43 Score=33.72 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=34.4
Q ss_pred CCcccccccCCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCC-CCccc
Q 001016 978 PSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCS-GLSMA 1056 (1190)
Q Consensus 978 ~~~~~~~~~~~gC~HY~r~ckl~~pcC~k~y~Cr~CHde~~dH~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc-~~~fa 1056 (1190)
.+|..|.+ =+|.++++++.. -++|.= |+ + ++++.....|++++|+ |.-||
T Consensus 83 k~~t~Pkk----~~~~~~~~~~~~---~~~~~~----~~--~----------------~~~~~~~~~c~~~~cg~g~fma 133 (152)
T 3u5c_f 83 XXXXXXXX----XXXXXXXXXXXV---LSYYKV----DA--E----------------GKVTKLRRECSNPTCGAGVFLA 133 (152)
T ss_dssp CCCCCCSC----CCCCCCCCCCCC---CCCSEE----CS--S----------------SCEECCSCBCCSTTSCSSSBEE
T ss_pred cccccccc----ccccccccccce---eeEEEE----cc--C----------------CeEEECcCcCCCccCCCceEec
Confidence 46776654 268888888743 355532 00 1 2344445678887774 22344
Q ss_pred ----eEecccccc
Q 001016 1057 ----KYYCGICKF 1065 (1190)
Q Consensus 1057 ----~Y~C~~C~l 1065 (1190)
++||.+|.+
T Consensus 134 ~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 134 NHKDRLYCGKCHS 146 (152)
T ss_dssp ECSSCEEESSSSS
T ss_pred ccCCCcccCCCce
Confidence 778888865
No 152
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.42 E-value=11 Score=34.63 Aligned_cols=54 Identities=20% Similarity=0.559 Sum_probs=34.7
Q ss_pred CCCCCcccccccccCCCeeEe-cCCCCccCHhhHHHHH--------hcCCCCCCCcccccchh
Q 001016 1115 LETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQAYT--------CSHYICPICSKSLGDMA 1168 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~-LpCgH~fH~~Ci~~wl--------~~~~~CPiCrk~l~~m~ 1168 (1190)
.+..|.||...-......+.. =.|...||..|+..=+ ...-.||.|......+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 367899998751111122222 2789999999997643 23567999987665544
No 153
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=22.29 E-value=57 Score=30.02 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=16.8
Q ss_pred eccccccccCCCCcccCCCCCccccCCCCCccccc
Q 001016 1059 YCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFH 1093 (1190)
Q Consensus 1059 ~C~~C~l~dd~k~~yHC~~CgiCrvg~gl~~~~fH 1093 (1190)
||-+|- || |-+|-+.+|||+.|..
T Consensus 26 yCKkCc--------~H---Cq~CF~~KGLGIsYgR 49 (86)
T 1tac_A 26 HAKKSA--------YH---SQVAFITKGLGISYGR 49 (86)
T ss_dssp STTTTT--------TT---CCCSCSSTTSSSSSCC
T ss_pred eecchh--------hh---hhHHHccCCCceEecc
Confidence 666663 55 4567889999987643
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=22.21 E-value=39 Score=34.56 Aligned_cols=87 Identities=20% Similarity=0.413 Sum_probs=55.0
Q ss_pred cccCCCCCccccCCCCCccccccCCccccccccc-cccccccCCCCCCCcccccccccCCCeeEec--CCCCccCHhhHH
Q 001016 1072 VYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQ 1148 (1190)
Q Consensus 1072 ~yHC~~CgiCrvg~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCgH~fH~~Ci~ 1148 (1190)
.++|-.||--.+- .-...|...-|..|...-+ ......+.+.+.-|.||.+. ++-+.-- .|...|...||+
T Consensus 36 e~~Ct~CG~~~~~--~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~ 109 (159)
T 3a1b_A 36 EDICISCGSLNVT--LEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVD 109 (159)
T ss_dssp GGSBTTTCCSCCC--EECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHH
T ss_pred cCcccCCCCcCcc--ccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHH
Confidence 5666777653332 1124555566666665444 45666788889999999864 2222222 588999999999
Q ss_pred HHHhc----------CCCCCCCcccc
Q 001016 1149 AYTCS----------HYICPICSKSL 1164 (1190)
Q Consensus 1149 ~wl~~----------~~~CPiCrk~l 1164 (1190)
..+.. .-.|=+|.-..
T Consensus 110 ~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 110 LLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp HHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred HhcCHhHHHHHhccCCCEEEecCCcc
Confidence 88642 34577777443
No 155
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.10 E-value=23 Score=37.14 Aligned_cols=46 Identities=20% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh----cCCCCCCCccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~----~~~~CPiCrk~ 1163 (1190)
..+..|.+|.+. ++-+.-=.|.-.||..|+.+-+. ..-.||.|+..
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 346779999754 22111226789999999976553 34679999864
No 156
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.08 E-value=49 Score=28.95 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=0.0
Q ss_pred ccccCCCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1109 KCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1109 ~C~e~~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
.|-.+.-...|+.|.+.+. .+.+..+ |..||..|+ +|-.|+++|.+
T Consensus 8 ~dy~~~~~~~C~~C~~~I~--~~~v~a~--~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 8 LDYQRLYGTRCFSCDQFIE--GEVVSAL--GKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp SCGGGSCCCBCTTTCCBCC--SCCEEET--TEEECTTTS--------SCSSSCCCCCS
T ss_pred HHHHhHhCCcCccccCEec--cceEEEC--CceeCccCC--------ccccCCCCCCC
No 157
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=21.99 E-value=28 Score=32.55 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=5.1
Q ss_pred CcccCCCCCcc
Q 001016 1071 VVYHCPFCNLC 1081 (1190)
Q Consensus 1071 ~~yHC~~CgiC 1081 (1190)
+|+||..||.-
T Consensus 53 GIW~C~~Cg~~ 63 (92)
T 3iz5_m 53 GIWGCKDCGKV 63 (92)
T ss_dssp TEEECSSSCCE
T ss_pred ceEEcCCCCCE
Confidence 44444444443
No 158
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.66 E-value=45 Score=29.13 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=30.0
Q ss_pred CCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
....|+.|.+.++. +.+ ..-|..||..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VFV--KLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--SCE--ECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--cEE--EECcceeCcCcC--------eeCCCCCCCCC
Confidence 35679999998764 233 344899999986 69999999853
No 159
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.31 E-value=28 Score=29.71 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=30.6
Q ss_pred CCCCCCcccccccccCCCeeEecCCCCccCHhhHHHHHh----cCCCCCCCcccc
Q 001016 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1190)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~----~~~~CPiCrk~l 1164 (1190)
..+..|.||.+. ++-+.--.|.-.||..|+..=+. ..-.||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346678888753 22122226888999999985432 346799998654
No 160
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.20 E-value=1.3e+02 Score=32.47 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=25.5
Q ss_pred CCCCCCccccceeeccccCccccCCCCCCCCCCCCCccceEeccccccccCCCCcccCCCCC
Q 001016 1018 SDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCN 1079 (1190)
Q Consensus 1018 ~dH~~~r~~~~~~~C~~C~~~q~~~~~C~~~~Cc~~~fa~Y~C~~C~l~dd~k~~yHC~~Cg 1079 (1190)
.++++.| .....|..|... ....|.. | +|.+|+--++....-.|+.|.
T Consensus 149 ~~~~~~r--~~~~~C~~c~~~--~~w~C~~--c--------~C~vC~~~~~~~~lL~CD~C~ 196 (226)
T 3ask_A 149 VDNPMRR--KSGPSCKHCKDD--VNRLCRV--C--------ACHLCGGRQDPDKQLMCDECD 196 (226)
T ss_dssp CSCCCCC--CCSCCCTTTTTC--TTSCCTT--T--------SCSSSCCCCC--CCEECSSSC
T ss_pred ccccccc--cCCcccccccCC--cCEecCC--C--------CCcCCCCCCCCCCeEEcCCCC
Confidence 3556666 334557776422 2235554 2 467777766655555666664
No 161
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.14 E-value=49 Score=28.72 Aligned_cols=38 Identities=24% Similarity=0.608 Sum_probs=27.7
Q ss_pred CCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
..|+.|...+.. +.+..+ |..||..|+ +|-.|+++|.+
T Consensus 16 ~~C~~C~~~I~~--~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE--NYLSAM--DTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS--SCEEET--TEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc--eeEEEC--CCeEecCcC--------ChhhCCCCCCC
Confidence 568888888653 334333 788998875 68899998875
No 162
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.12 E-value=30 Score=31.94 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=8.0
Q ss_pred CCCCCCcccccc
Q 001016 1114 GLETNCPICCDF 1125 (1190)
Q Consensus 1114 ~~~~~CpICle~ 1125 (1190)
...-.|-+|.+.
T Consensus 45 ~g~l~C~~Cg~~ 56 (85)
T 1wii_A 45 TGVISCTVCLEE 56 (85)
T ss_dssp EEEEEESSSCCE
T ss_pred EEEEEcccCCCe
Confidence 345667777776
No 163
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.00 E-value=55 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.606 Sum_probs=30.8
Q ss_pred CCCCccccccccc-CCCeeEecCCCCccCHhhHHHH---H--hcCCCCCCCccccc
Q 001016 1116 ETNCPICCDFLFT-SSATVRALPCGHFMHSDCFQAY---T--CSHYICPICSKSLG 1165 (1190)
Q Consensus 1116 ~~~CpICle~lf~-s~~~v~~LpCgH~fH~~Ci~~w---l--~~~~~CPiCrk~l~ 1165 (1190)
...| ||... ++ ...-+.--.|.--||..|+.-- . ...+.||.|+....
T Consensus 12 ~~~C-~C~~~-~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQP-YNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCS-CCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCc-cCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3445 88776 33 2222333478999999998522 1 25789999997654
No 164
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.00 E-value=33 Score=34.97 Aligned_cols=41 Identities=24% Similarity=0.558 Sum_probs=29.2
Q ss_pred CCCCcccccccccCCCeeEecCCCCccCHhhHHHHHhcCCCCCCCcccccc
Q 001016 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1190)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCgH~fH~~Ci~~wl~~~~~CPiCrk~l~~ 1166 (1190)
...|..|...+......+. .-|..||..|+ +|-.|++.|..
T Consensus 119 ~~kC~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~~ 159 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLAT 159 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCE--ETTEECCTTTC--------CCTTTCCCCCT
T ss_pred ccccccCCCccCCCceEEe--cCCCCEEeCCC--------cCCCCCCCCCC
Confidence 3579999988654322222 34789999986 89999999864
No 165
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.67 E-value=23 Score=33.43 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=14.4
Q ss_pred ccccCCccccccccccccccccCCCCCCCccccccc
Q 001016 1091 FFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFL 1126 (1190)
Q Consensus 1091 ~fHC~~C~~C~s~~l~~H~C~e~~~~~~CpICle~l 1126 (1190)
+|||..|+.-+.+ ...||-|.++|
T Consensus 48 ~~hC~~C~~~f~~------------~a~CPdC~q~L 71 (101)
T 2jne_A 48 HARCRSCGEFIEM------------KALCPDCHQPL 71 (101)
T ss_dssp EEEETTTCCEEEE------------EEECTTTCSBC
T ss_pred EEECccccchhhc------------cccCcchhhHH
Confidence 5566666654443 35688887663
Done!