BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001018
(1188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 201 YYQYLSSTTEAAEEKIAMLRENE-SLLKVNERLNHEKESLLKTKEISDGQISALTK--SL 257
YYQ+ +K A L +++ L + L+ E + I+ G I+ K +
Sbjct: 118 YYQW---------DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 258 EALHRDL--KDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHS-VRNFATTNGD 314
+L +DL K + +ILD +R ++ND ++ + H++G H + N T+GD
Sbjct: 169 RSLFQDLELKKERRVILDC------ERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 222
Query: 315 VIQSQ 319
+++ Q
Sbjct: 223 LLKIQ 227
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 201 YYQYLSSTTEAAEEKIAMLRENE-SLLKVNERLNHEKESLLKTKEISDGQISALTK--SL 257
YYQ+ +K A L +++ L + L+ E + I+ G I+ K +
Sbjct: 121 YYQW---------DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 171
Query: 258 EALHRDL--KDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHS-VRNFATTNGD 314
+L +DL K + +ILD +R ++ND ++ + H++G H + N T+GD
Sbjct: 172 RSLFQDLELKKERRVILDC------ERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 225
Query: 315 VIQSQ 319
+++ Q
Sbjct: 226 LLKIQ 230
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 201 YYQYLSSTTEAAEEKIAMLRENE-SLLKVNERLNHEKESLLKTKEISDGQISALTK--SL 257
YYQ+ +K A L +++ L + L+ E + I+ G I+ K +
Sbjct: 116 YYQW---------DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 166
Query: 258 EALHRDL--KDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHS-VRNFATTNGD 314
+L +DL K + +ILD +R ++ND ++ + H++G H + N T+GD
Sbjct: 167 RSLFQDLELKKERRVILDC------ERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 220
Query: 315 VIQSQ 319
+++ Q
Sbjct: 221 LLKIQ 225
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 201 YYQYLSSTTEAAEEKIAMLRENE-SLLKVNERLNHEKESLLKTKEISDGQISALTK--SL 257
YYQ+ +K A L +++ L + L+ E + I+ G I+ K +
Sbjct: 126 YYQW---------DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 176
Query: 258 EALHRDL--KDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHS-VRNFATTNGD 314
+L +DL K + +ILD +R ++ND ++ + H++G H + N T+GD
Sbjct: 177 RSLFQDLELKKERRVILDC------ERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 230
Query: 315 VIQSQ 319
+++ Q
Sbjct: 231 LLKIQ 235
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 201 YYQYLSSTTEAAEEKIAMLRENE-SLLKVNERLNHEKESLLKTKEISDGQISALTK--SL 257
YYQ+ +K A L +++ L + L+ E + I+ G I+ K +
Sbjct: 118 YYQW---------DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETY 168
Query: 258 EALHRDL--KDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHS-VRNFATTNGD 314
+L +DL K + +ILD +R ++ND ++ + H++G H + N T+GD
Sbjct: 169 RSLFQDLELKKERRVILDC------ERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 222
Query: 315 VIQSQ 319
+++ Q
Sbjct: 223 LLKIQ 227
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 201 YYQYLSSTTEAAEEKIAMLRENE-SLLKVNERLNHEKESLLKTKEISDGQISALTKS--L 257
YYQ+ +K A L +++ L + L+ E + I+ G I+ K
Sbjct: 118 YYQW---------DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMY 168
Query: 258 EALHRDL--KDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHS-VRNFATTNGD 314
+L +DL K + +ILD +R ++ND ++ + H++G H + N T+GD
Sbjct: 169 RSLFQDLELKKERRVILDC------ERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 222
Query: 315 VIQSQ 319
+++ Q
Sbjct: 223 LLKIQ 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,776,029
Number of Sequences: 62578
Number of extensions: 978548
Number of successful extensions: 2383
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2322
Number of HSP's gapped (non-prelim): 76
length of query: 1188
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1078
effective length of database: 8,089,757
effective search space: 8720758046
effective search space used: 8720758046
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)