Query 001018
Match_columns 1188
No_of_seqs 243 out of 430
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 13:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 1.6E-53 3.6E-58 519.8 30.0 747 44-1086 3-758 (759)
2 KOG0211 Protein phosphatase 2A 100.0 2.2E-37 4.7E-42 378.7 24.3 512 500-1078 80-648 (759)
3 KOG2171 Karyopherin (importin) 99.6 6.2E-11 1.3E-15 148.4 45.4 513 491-1122 68-623 (1075)
4 KOG2171 Karyopherin (importin) 99.4 3.7E-09 8.1E-14 132.8 43.1 463 503-1079 37-530 (1075)
5 PRK13800 putative oxidoreducta 99.3 2.4E-10 5.2E-15 147.7 27.4 117 503-643 622-738 (897)
6 KOG1240 Protein kinase contain 99.1 2.2E-08 4.8E-13 125.4 27.2 422 502-1096 266-778 (1431)
7 PRK09687 putative lyase; Provi 99.1 1.8E-08 3.9E-13 114.0 22.8 124 505-641 26-150 (280)
8 PRK13800 putative oxidoreducta 99.0 1.3E-08 2.9E-13 131.8 24.2 133 484-643 634-766 (897)
9 PRK09687 putative lyase; Provi 99.0 7.2E-08 1.6E-12 109.2 23.8 88 900-1005 191-279 (280)
10 PF01602 Adaptin_N: Adaptin N 99.0 7.8E-07 1.7E-11 108.2 33.1 444 492-1049 69-522 (526)
11 PF01602 Adaptin_N: Adaptin N 98.9 2.4E-06 5.1E-11 104.0 34.1 135 502-643 42-176 (526)
12 KOG1242 Protein containing ada 98.9 1.5E-05 3.2E-10 96.3 38.8 444 457-1031 53-506 (569)
13 KOG2023 Nuclear transport rece 98.8 4.2E-06 9.2E-11 100.4 31.7 423 497-1030 123-574 (885)
14 KOG0213 Splicing factor 3b, su 98.8 3E-05 6.5E-10 94.0 36.9 218 768-1013 725-959 (1172)
15 COG5181 HSH155 U2 snRNP splice 98.7 2.4E-05 5.2E-10 93.2 33.6 457 459-1013 200-764 (975)
16 KOG1241 Karyopherin (importin) 98.7 0.00031 6.7E-09 86.3 41.9 455 497-1050 254-759 (859)
17 KOG2023 Nuclear transport rece 98.7 1.5E-05 3.2E-10 95.9 29.7 125 518-643 371-500 (885)
18 KOG0915 Uncharacterized conser 98.7 1.3E-05 2.8E-10 103.3 30.8 462 494-1027 810-1326(1702)
19 PTZ00429 beta-adaptin; Provisi 98.7 0.00073 1.6E-08 85.9 46.0 468 503-1049 69-544 (746)
20 PTZ00429 beta-adaptin; Provisi 98.6 0.00025 5.4E-09 90.0 41.2 417 512-1096 42-470 (746)
21 PLN03200 cellulose synthase-in 98.5 0.0005 1.1E-08 93.8 42.2 527 500-1091 187-806 (2102)
22 KOG1824 TATA-binding protein-i 98.5 0.00081 1.8E-08 84.0 39.4 112 895-1007 514-637 (1233)
23 KOG1240 Protein kinase contain 98.5 9.9E-06 2.1E-10 102.4 23.2 313 542-989 423-745 (1431)
24 KOG1060 Vesicle coat complex A 98.4 0.00022 4.7E-09 87.7 30.9 81 581-667 144-224 (968)
25 KOG0213 Splicing factor 3b, su 98.4 0.00012 2.6E-09 88.9 28.3 137 509-654 448-587 (1172)
26 KOG1824 TATA-binding protein-i 98.3 0.0023 5E-08 80.2 35.4 470 499-1078 210-747 (1233)
27 KOG1242 Protein containing ada 98.3 0.00094 2E-08 81.1 31.5 466 543-1117 19-504 (569)
28 PLN03200 cellulose synthase-in 98.2 0.0048 1E-07 84.7 38.4 324 757-1124 447-796 (2102)
29 KOG1241 Karyopherin (importin) 98.1 0.0055 1.2E-07 75.7 34.3 350 496-1009 84-478 (859)
30 PF10508 Proteasom_PSMB: Prote 98.1 0.011 2.4E-07 72.7 37.2 269 507-795 43-327 (503)
31 COG5215 KAP95 Karyopherin (imp 98.0 0.072 1.6E-06 64.4 38.3 448 500-1031 261-792 (858)
32 KOG1243 Protein kinase [Genera 97.9 0.0003 6.5E-09 86.2 18.6 240 769-1085 264-508 (690)
33 PF13646 HEAT_2: HEAT repeats; 97.8 0.0001 2.2E-09 67.9 8.4 86 903-1004 1-88 (88)
34 PF12348 CLASP_N: CLASP N term 97.7 0.0017 3.7E-08 70.8 18.6 117 895-1014 88-212 (228)
35 KOG0915 Uncharacterized conser 97.7 0.019 4.1E-07 75.5 30.0 368 503-1004 957-1343(1702)
36 COG5181 HSH155 U2 snRNP splice 97.7 0.014 3E-07 70.7 26.6 134 512-654 256-392 (975)
37 PF12348 CLASP_N: CLASP N term 97.7 0.001 2.2E-08 72.6 16.4 164 478-643 22-201 (228)
38 KOG2137 Protein kinase [Signal 97.7 0.0084 1.8E-07 74.2 25.2 232 776-1084 290-526 (700)
39 PF13646 HEAT_2: HEAT repeats; 97.6 0.00044 9.6E-09 63.7 10.4 85 505-605 2-88 (88)
40 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00033 7.1E-09 67.4 8.4 65 575-639 22-88 (97)
41 KOG2259 Uncharacterized conser 97.5 0.02 4.4E-07 70.0 24.2 94 894-991 403-499 (823)
42 cd00020 ARM Armadillo/beta-cat 97.3 0.0013 2.8E-08 63.1 9.6 108 900-1007 6-119 (120)
43 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0023 5.1E-08 61.6 9.4 83 518-600 2-88 (97)
44 KOG0166 Karyopherin (importin) 97.1 0.017 3.6E-07 70.2 18.1 331 754-1124 107-488 (514)
45 KOG2137 Protein kinase [Signal 97.0 0.0048 1E-07 76.3 12.1 188 897-1097 308-501 (700)
46 PF02985 HEAT: HEAT repeat; I 96.9 0.00074 1.6E-08 51.3 3.1 30 941-970 1-30 (31)
47 PF02985 HEAT: HEAT repeat; I 96.9 0.001 2.2E-08 50.6 3.8 30 581-610 1-30 (31)
48 KOG2259 Uncharacterized conser 96.7 1.1 2.3E-05 55.7 28.5 92 549-643 206-305 (823)
49 COG1413 FOG: HEAT repeat [Ener 96.6 0.88 1.9E-05 52.7 26.6 36 769-810 190-225 (335)
50 KOG1243 Protein kinase [Genera 96.5 0.0038 8.3E-08 76.9 6.8 166 478-643 345-510 (690)
51 PF05918 API5: Apoptosis inhib 96.5 0.051 1.1E-06 66.9 16.3 127 497-631 54-190 (556)
52 cd00020 ARM Armadillo/beta-cat 96.5 0.017 3.6E-07 55.4 9.9 110 500-609 5-120 (120)
53 PF12717 Cnd1: non-SMC mitotic 96.5 0.034 7.4E-07 59.1 12.8 110 915-1027 2-112 (178)
54 KOG0413 Uncharacterized conser 96.4 1.7 3.7E-05 55.8 28.0 113 915-1031 945-1060(1529)
55 KOG1020 Sister chromatid cohes 96.3 7.2 0.00016 52.8 39.9 146 500-653 814-962 (1692)
56 TIGR02270 conserved hypothetic 96.2 0.039 8.5E-07 66.2 12.7 115 504-643 88-202 (410)
57 KOG0212 Uncharacterized conser 96.2 5 0.00011 49.4 37.2 370 501-991 41-428 (675)
58 KOG0166 Karyopherin (importin) 96.2 0.94 2E-05 55.5 24.0 109 505-613 69-185 (514)
59 COG5215 KAP95 Karyopherin (imp 96.2 5.1 0.00011 49.3 39.2 507 496-1031 88-694 (858)
60 PF12717 Cnd1: non-SMC mitotic 95.9 0.15 3.2E-06 54.2 14.1 95 894-990 18-112 (178)
61 PF05004 IFRD: Interferon-rela 95.8 0.42 9E-06 55.5 18.2 166 477-643 57-252 (309)
62 PF12719 Cnd3: Nuclear condens 95.4 0.88 1.9E-05 52.4 18.9 147 503-652 28-188 (298)
63 KOG1061 Vesicle coat complex A 95.4 12 0.00026 47.7 30.7 124 484-613 69-193 (734)
64 PF13513 HEAT_EZ: HEAT-like re 95.2 0.034 7.4E-07 47.3 5.0 51 555-605 1-53 (55)
65 KOG0212 Uncharacterized conser 95.1 12 0.00026 46.3 27.8 108 900-1007 290-405 (675)
66 PF08513 LisH: LisH; InterPro 94.8 0.0087 1.9E-07 44.4 0.3 25 153-177 2-26 (27)
67 KOG1967 DNA repair/transcripti 94.8 0.15 3.2E-06 64.9 10.7 144 842-1004 868-1020(1030)
68 PF10508 Proteasom_PSMB: Prote 94.8 15 0.00033 45.6 41.5 97 546-643 43-143 (503)
69 KOG1077 Vesicle coat complex A 94.7 15 0.00032 46.6 26.7 250 735-1012 171-437 (938)
70 PF13513 HEAT_EZ: HEAT-like re 94.6 0.047 1E-06 46.4 4.4 53 954-1006 1-55 (55)
71 COG5096 Vesicle coat complex, 94.6 0.46 1E-05 60.6 14.7 106 899-1009 90-196 (757)
72 KOG4653 Uncharacterized conser 94.6 0.37 8E-06 61.1 13.4 162 899-1078 766-936 (982)
73 PF12719 Cnd3: Nuclear condens 94.3 2.1 4.5E-05 49.3 18.3 169 902-1080 28-212 (298)
74 COG1413 FOG: HEAT repeat [Ener 94.3 1.1 2.3E-05 52.0 16.0 109 513-643 117-237 (335)
75 KOG2956 CLIP-associating prote 94.2 1.3 2.7E-05 53.3 16.1 187 460-651 284-480 (516)
76 TIGR02270 conserved hypothetic 93.9 0.23 5E-06 59.7 9.8 93 898-1007 114-206 (410)
77 KOG1059 Vesicle coat complex A 93.8 16 0.00035 46.3 24.8 130 895-1030 293-426 (877)
78 PF12460 MMS19_C: RNAPII trans 93.4 5.2 0.00011 48.3 20.0 189 458-648 165-394 (415)
79 KOG1949 Uncharacterized conser 93.2 0.32 7E-06 60.2 9.3 112 896-1007 215-330 (1005)
80 KOG2062 26S proteasome regulat 93.2 0.79 1.7E-05 57.4 12.4 121 505-639 522-644 (929)
81 KOG1078 Vesicle coat complex C 93.1 33 0.00073 44.1 26.1 95 538-639 61-155 (865)
82 KOG1820 Microtubule-associated 92.9 2.6 5.6E-05 54.7 17.2 78 899-976 369-450 (815)
83 KOG1949 Uncharacterized conser 92.9 0.58 1.3E-05 58.1 10.8 98 546-643 225-326 (1005)
84 KOG2025 Chromosome condensatio 92.5 2.4 5.2E-05 53.2 15.2 100 906-1007 544-647 (892)
85 PF04826 Arm_2: Armadillo-like 92.5 2.7 5.8E-05 47.6 14.8 127 901-1027 54-185 (254)
86 KOG1062 Vesicle coat complex A 92.5 26 0.00057 45.1 24.1 253 753-1050 176-451 (866)
87 PF12460 MMS19_C: RNAPII trans 92.3 32 0.00069 41.6 33.2 92 935-1026 318-415 (415)
88 KOG4653 Uncharacterized conser 92.2 3.1 6.8E-05 53.2 16.0 160 483-643 747-913 (982)
89 KOG1820 Microtubule-associated 92.2 2.3 5E-05 55.2 15.4 143 768-940 304-453 (815)
90 PF05918 API5: Apoptosis inhib 91.9 43 0.00094 42.1 27.9 113 546-666 28-140 (556)
91 PF05804 KAP: Kinesin-associat 91.6 52 0.0011 42.7 26.2 31 940-970 620-650 (708)
92 PF12530 DUF3730: Protein of u 91.3 5.3 0.00011 44.6 15.4 139 483-643 1-146 (234)
93 PF05004 IFRD: Interferon-rela 91.2 20 0.00044 41.7 20.5 189 900-1094 85-303 (309)
94 smart00667 LisH Lissencephaly 90.7 0.11 2.4E-06 39.2 1.0 30 150-179 2-31 (34)
95 KOG1061 Vesicle coat complex A 90.7 62 0.0013 41.7 26.4 152 484-643 99-263 (734)
96 KOG1248 Uncharacterized conser 90.7 76 0.0017 42.7 31.4 107 895-1005 821-930 (1176)
97 KOG1060 Vesicle coat complex A 90.5 1.5 3.2E-05 55.5 10.6 101 903-1009 110-210 (968)
98 PF13001 Ecm29: Proteasome sta 90.4 35 0.00076 42.4 22.8 232 757-1016 239-496 (501)
99 KOG0567 HEAT repeat-containing 90.1 3.2 6.9E-05 46.9 11.9 214 752-1006 63-278 (289)
100 KOG1943 Beta-tubulin folding c 89.9 84 0.0018 42.0 39.4 143 501-649 340-501 (1133)
101 KOG1248 Uncharacterized conser 89.9 88 0.0019 42.2 40.8 348 643-1027 501-879 (1176)
102 KOG2025 Chromosome condensatio 89.8 5.5 0.00012 50.2 14.6 110 894-1005 78-190 (892)
103 COG5096 Vesicle coat complex, 89.5 80 0.0017 41.2 36.5 95 544-643 95-190 (757)
104 KOG4224 Armadillo repeat prote 89.5 4.1 8.9E-05 47.7 12.5 128 904-1031 170-306 (550)
105 PF01347 Vitellogenin_N: Lipop 89.4 2.1 4.6E-05 53.9 11.5 129 502-643 431-584 (618)
106 COG5218 YCG1 Chromosome conden 89.2 18 0.00039 45.0 17.9 97 908-1006 537-637 (885)
107 KOG1822 Uncharacterized conser 88.7 8.1 0.00018 53.4 16.0 159 457-615 801-994 (2067)
108 KOG1517 Guanine nucleotide bin 88.2 4.2 9.2E-05 53.0 12.5 185 452-639 482-723 (1387)
109 KOG2956 CLIP-associating prote 87.7 8.9 0.00019 46.5 14.1 118 502-627 371-491 (516)
110 COG5240 SEC21 Vesicle coat com 87.4 90 0.0019 39.2 25.8 104 537-643 260-364 (898)
111 KOG1059 Vesicle coat complex A 87.2 75 0.0016 40.8 21.8 234 753-1032 141-406 (877)
112 COG5240 SEC21 Vesicle coat com 86.1 1E+02 0.0022 38.7 39.2 457 535-1078 59-539 (898)
113 PF05804 KAP: Kinesin-associat 85.7 1.3E+02 0.0027 39.3 28.8 115 901-1016 533-656 (708)
114 KOG4224 Armadillo repeat prote 85.6 6.7 0.00014 46.1 11.2 130 900-1030 207-347 (550)
115 smart00638 LPD_N Lipoprotein N 84.0 7.2 0.00016 48.9 11.8 132 502-643 393-540 (574)
116 KOG2032 Uncharacterized conser 83.5 5.5 0.00012 48.5 9.7 112 901-1012 299-420 (533)
117 KOG2213 Apoptosis inhibitor 5/ 83.4 32 0.0007 41.1 15.5 34 499-532 58-91 (460)
118 COG5116 RPN2 26S proteasome re 82.7 8.1 0.00017 47.6 10.7 121 506-640 520-642 (926)
119 COG5218 YCG1 Chromosome conden 82.7 18 0.0004 44.9 13.6 176 460-647 39-227 (885)
120 KOG2213 Apoptosis inhibitor 5/ 82.5 71 0.0015 38.4 17.8 230 769-1053 71-317 (460)
121 KOG2032 Uncharacterized conser 82.3 17 0.00037 44.4 13.2 139 504-643 260-411 (533)
122 PHA02629 A-type inclusion body 82.2 1.1 2.3E-05 38.0 2.4 22 82-103 33-54 (61)
123 cd08050 TAF6 TATA Binding Prot 81.8 16 0.00036 43.1 12.9 119 509-634 185-324 (343)
124 COG5064 SRP1 Karyopherin (impo 81.8 10 0.00022 44.3 10.6 189 895-1093 237-443 (526)
125 PF12530 DUF3730: Protein of u 81.5 65 0.0014 36.0 16.9 157 885-1055 21-190 (234)
126 PF07888 CALCOCO1: Calcium bin 81.4 14 0.00031 45.9 12.4 118 171-300 107-230 (546)
127 PF13001 Ecm29: Proteasome sta 81.1 8.7 0.00019 47.7 10.8 169 470-642 290-482 (501)
128 KOG0414 Chromosome condensatio 80.6 33 0.00071 45.9 15.7 109 895-1007 913-1026(1251)
129 KOG1020 Sister chromatid cohes 78.6 3E+02 0.0064 38.6 34.5 89 479-569 871-959 (1692)
130 PF14500 MMS19_N: Dos2-interac 78.4 1.3E+02 0.0028 34.4 22.1 56 892-947 199-254 (262)
131 PF12074 DUF3554: Domain of un 78.3 63 0.0014 37.9 16.3 90 516-609 1-90 (339)
132 PF08506 Cse1: Cse1; InterPro 77.9 1.7E+02 0.0036 35.3 20.0 119 912-1031 222-360 (370)
133 PF08506 Cse1: Cse1; InterPro 77.0 14 0.00031 44.1 10.5 65 898-964 306-370 (370)
134 KOG0392 SNF2 family DNA-depend 75.4 11 0.00024 50.2 9.5 123 487-613 799-929 (1549)
135 PF12830 Nipped-B_C: Sister ch 75.1 1.3E+02 0.0027 32.5 16.3 69 899-971 6-76 (187)
136 COG5098 Chromosome condensatio 74.9 23 0.00051 44.8 11.5 100 545-644 303-411 (1128)
137 KOG2081 Nuclear transport regu 74.7 68 0.0015 40.0 15.3 173 482-665 288-473 (559)
138 KOG2973 Uncharacterized conser 74.5 48 0.001 38.7 13.1 52 503-555 4-58 (353)
139 PF04826 Arm_2: Armadillo-like 74.0 1E+02 0.0022 35.1 15.8 157 912-1076 24-186 (254)
140 PF10363 DUF2435: Protein of u 74.0 19 0.0004 34.7 8.5 64 947-1010 10-74 (92)
141 smart00638 LPD_N Lipoprotein N 73.8 18 0.00038 45.5 10.8 129 501-643 445-573 (574)
142 cd08050 TAF6 TATA Binding Prot 73.6 32 0.00069 40.8 12.1 145 858-1009 174-341 (343)
143 PF01347 Vitellogenin_N: Lipop 73.6 15 0.00032 46.5 10.1 132 498-643 486-617 (618)
144 KOG1517 Guanine nucleotide bin 73.5 18 0.00039 47.6 10.4 115 896-1010 594-734 (1387)
145 KOG1062 Vesicle coat complex A 72.6 3.1E+02 0.0068 35.9 37.4 79 568-650 131-209 (866)
146 KOG1525 Sister chromatid cohes 71.3 4.2E+02 0.0092 36.9 28.9 186 897-1096 255-452 (1266)
147 COG2433 Uncharacterized conser 70.3 23 0.0005 44.3 10.0 40 144-189 337-377 (652)
148 KOG1077 Vesicle coat complex A 70.0 3.4E+02 0.0073 35.3 36.9 103 935-1046 455-564 (938)
149 PF10363 DUF2435: Protein of u 69.8 36 0.00079 32.7 9.4 71 903-973 5-76 (92)
150 cd03568 VHS_STAM VHS domain fa 69.7 47 0.001 34.6 10.9 79 895-973 31-114 (144)
151 KOG0414 Chromosome condensatio 69.2 82 0.0018 42.5 15.0 147 501-649 269-429 (1251)
152 KOG1962 B-cell receptor-associ 68.0 21 0.00044 39.6 8.2 84 217-300 124-210 (216)
153 PF14662 CCDC155: Coiled-coil 66.8 26 0.00056 38.1 8.5 53 219-271 94-146 (193)
154 PF11559 ADIP: Afadin- and alp 66.3 50 0.0011 34.2 10.4 19 322-340 129-147 (151)
155 PLN03076 ARF guanine nucleotid 65.7 3.4E+02 0.0074 39.2 20.8 126 518-643 1108-1248(1780)
156 PF10274 ParcG: Parkin co-regu 65.4 69 0.0015 34.8 11.4 93 899-1027 36-134 (183)
157 KOG1967 DNA repair/transcripti 65.3 50 0.0011 43.3 11.8 138 503-640 868-1016(1030)
158 KOG2149 Uncharacterized conser 65.1 69 0.0015 38.5 12.3 121 906-1026 63-191 (393)
159 PF07571 DUF1546: Protein of u 64.8 18 0.0004 34.6 6.3 69 950-1022 16-89 (92)
160 PF10481 CENP-F_N: Cenp-F N-te 64.6 47 0.001 37.9 10.1 42 260-301 86-127 (307)
161 PF08317 Spc7: Spc7 kinetochor 64.5 1.1E+02 0.0025 35.8 14.1 12 43-54 15-27 (325)
162 COG4942 Membrane-bound metallo 64.0 63 0.0014 39.2 11.8 41 260-300 201-241 (420)
163 KOG0392 SNF2 family DNA-depend 64.0 72 0.0016 43.3 13.0 110 901-1011 816-928 (1549)
164 PF10473 CENP-F_leu_zip: Leuci 63.9 1.2E+02 0.0026 31.7 12.3 18 223-240 20-37 (140)
165 PF12765 Cohesin_HEAT: HEAT re 63.8 10 0.00023 31.1 3.8 24 579-602 17-40 (42)
166 KOG2062 26S proteasome regulat 63.8 27 0.0006 44.5 9.0 123 503-634 556-680 (929)
167 cd06561 AlkD_like A new struct 63.7 45 0.00098 35.4 9.9 87 505-599 108-195 (197)
168 PRK11637 AmiB activator; Provi 62.6 41 0.0009 40.9 10.4 58 228-285 55-112 (428)
169 PF10473 CENP-F_leu_zip: Leuci 62.3 59 0.0013 33.9 9.8 18 220-237 45-62 (140)
170 KOG0946 ER-Golgi vesicle-tethe 61.9 1.6E+02 0.0034 38.5 15.0 73 938-1010 120-197 (970)
171 PRK11637 AmiB activator; Provi 61.8 29 0.00062 42.2 8.9 70 225-294 45-114 (428)
172 cd03561 VHS VHS domain family; 61.6 80 0.0017 32.1 10.7 78 896-973 32-116 (133)
173 smart00567 EZ_HEAT E-Z type HE 61.3 11 0.00024 28.0 3.4 30 594-631 1-30 (30)
174 PF12765 Cohesin_HEAT: HEAT re 61.0 11 0.00024 31.0 3.5 40 604-643 3-42 (42)
175 PF10521 DUF2454: Protein of u 59.8 1.2E+02 0.0026 34.9 12.9 136 896-1031 114-279 (282)
176 KOG2160 Armadillo/beta-catenin 59.8 3.5E+02 0.0076 32.3 16.6 113 915-1027 97-216 (342)
177 PF00790 VHS: VHS domain; Int 59.7 77 0.0017 32.5 10.3 105 862-971 8-120 (140)
178 COG1579 Zn-ribbon protein, pos 59.5 64 0.0014 36.4 10.3 65 225-289 15-79 (239)
179 COG5098 Chromosome condensatio 59.4 83 0.0018 40.2 11.8 128 457-608 278-414 (1128)
180 smart00787 Spc7 Spc7 kinetocho 59.0 1.5E+02 0.0033 34.8 13.7 11 42-52 10-20 (312)
181 PF10274 ParcG: Parkin co-regu 58.9 1.1E+02 0.0023 33.3 11.4 41 910-950 89-134 (183)
182 PF04111 APG6: Autophagy prote 57.8 58 0.0013 38.2 10.1 60 198-257 25-87 (314)
183 cd03569 VHS_Hrs_Vps27p VHS dom 57.3 1.2E+02 0.0025 31.5 11.1 79 896-974 36-119 (142)
184 PF07888 CALCOCO1: Calcium bin 56.4 78 0.0017 39.7 11.2 71 226-296 142-212 (546)
185 KOG0995 Centromere-associated 56.3 69 0.0015 40.1 10.5 33 269-301 294-326 (581)
186 KOG0567 HEAT repeat-containing 56.0 71 0.0015 36.6 9.8 89 502-606 187-277 (289)
187 PF13251 DUF4042: Domain of un 55.7 1E+02 0.0023 33.4 10.8 104 905-1008 44-174 (182)
188 KOG2933 Uncharacterized conser 55.5 57 0.0012 38.1 9.1 129 479-612 104-237 (334)
189 PF00514 Arm: Armadillo/beta-c 53.8 18 0.00039 28.9 3.6 33 936-968 8-40 (41)
190 PRK10884 SH3 domain-containing 53.6 68 0.0015 35.5 9.1 45 252-296 122-166 (206)
191 PF07571 DUF1546: Protein of u 53.6 20 0.00044 34.3 4.6 42 770-811 17-60 (92)
192 PF08389 Xpo1: Exportin 1-like 53.4 1.7E+02 0.0037 29.1 11.6 122 516-641 2-146 (148)
193 PF12830 Nipped-B_C: Sister ch 53.4 37 0.0008 36.6 7.0 69 936-1008 4-74 (187)
194 KOG0168 Putative ubiquitin fus 53.0 1.4E+02 0.0029 39.3 12.5 129 899-1027 209-345 (1051)
195 PF11864 DUF3384: Domain of un 52.0 2.5E+02 0.0055 34.6 14.8 85 903-989 26-117 (464)
196 PF10481 CENP-F_N: Cenp-F N-te 51.2 62 0.0013 37.0 8.3 17 326-342 176-192 (307)
197 KOG2011 Sister chromatid cohes 50.9 7.3E+02 0.016 33.9 19.0 110 885-995 266-384 (1048)
198 PF12054 DUF3535: Domain of un 50.4 5.8E+02 0.012 31.5 17.5 41 771-811 99-139 (441)
199 PF13251 DUF4042: Domain of un 50.2 1.2E+02 0.0026 33.0 10.1 54 917-970 2-70 (182)
200 PRK09343 prefoldin subunit bet 50.0 73 0.0016 32.2 8.0 43 192-234 4-52 (121)
201 KOG1851 Uncharacterized conser 49.6 2.1E+02 0.0046 39.9 14.0 118 531-652 1517-1641(1710)
202 COG1382 GimC Prefoldin, chaper 49.3 1.6E+02 0.0036 29.8 10.2 44 191-234 2-51 (119)
203 cd03567 VHS_GGA VHS domain fam 48.3 2.4E+02 0.0051 29.3 11.6 77 896-972 33-119 (139)
204 KOG1993 Nuclear transport rece 47.7 2.5E+02 0.0053 36.9 13.5 130 896-1027 521-666 (978)
205 smart00288 VHS Domain present 47.2 1.8E+02 0.0039 29.6 10.6 78 895-972 31-114 (133)
206 PF08713 DNA_alkylation: DNA a 47.2 52 0.0011 35.4 7.1 90 501-599 119-209 (213)
207 KOG0250 DNA repair protein RAD 45.3 1.2E+02 0.0026 40.7 10.8 69 222-297 656-724 (1074)
208 PF12074 DUF3554: Domain of un 45.3 76 0.0017 37.2 8.6 108 915-1027 1-113 (339)
209 smart00667 LisH Lissencephaly 44.7 21 0.00046 26.6 2.6 28 5-32 3-30 (34)
210 PF11865 DUF3385: Domain of un 44.7 1.3E+02 0.0028 31.8 9.2 122 900-1027 9-138 (160)
211 PF11698 V-ATPase_H_C: V-ATPas 44.6 1.7E+02 0.0036 29.8 9.5 70 900-969 42-115 (119)
212 KOG2759 Vacuolar H+-ATPase V1 44.3 3.3E+02 0.0072 33.3 13.3 32 620-652 115-146 (442)
213 KOG1822 Uncharacterized conser 44.2 4.3E+02 0.0094 37.9 15.7 133 895-1027 870-1007(2067)
214 PF14868 DUF4487: Domain of un 43.9 47 0.001 41.9 6.7 78 896-973 474-556 (559)
215 COG5116 RPN2 26S proteasome re 43.4 72 0.0016 39.9 7.8 112 511-631 561-674 (926)
216 PF09398 FOP_dimer: FOP N term 42.9 11 0.00023 35.6 0.8 32 147-178 14-45 (81)
217 PF09738 DUF2051: Double stran 42.8 63 0.0014 37.8 7.1 74 229-302 100-173 (302)
218 PF08167 RIX1: rRNA processing 42.8 2.4E+02 0.0052 29.8 11.0 116 897-1014 21-149 (165)
219 TIGR02169 SMC_prok_A chromosom 42.5 2.7E+02 0.0058 37.9 14.2 26 80-105 686-711 (1164)
220 PF12325 TMF_TATA_bd: TATA ele 42.4 2.3E+02 0.005 28.8 10.1 22 221-242 38-59 (120)
221 KOG1993 Nuclear transport rece 42.4 9.7E+02 0.021 31.8 23.5 299 749-1080 481-818 (978)
222 PF08614 ATG16: Autophagy prot 42.3 1.1E+02 0.0023 33.3 8.5 39 257-295 118-156 (194)
223 PF12325 TMF_TATA_bd: TATA ele 41.4 1.2E+02 0.0027 30.7 8.1 47 254-300 15-61 (120)
224 PF11698 V-ATPase_H_C: V-ATPas 41.4 89 0.0019 31.7 7.0 70 499-568 40-113 (119)
225 PF11932 DUF3450: Protein of u 41.4 1.6E+02 0.0036 33.1 10.1 63 215-277 44-106 (251)
226 PF00038 Filament: Intermediat 41.2 1.5E+02 0.0032 34.2 10.0 81 220-300 216-300 (312)
227 KOG1992 Nuclear export recepto 40.8 1E+03 0.022 31.7 17.9 72 896-969 455-527 (960)
228 PRK09039 hypothetical protein; 40.6 4.1E+02 0.009 31.6 13.6 49 248-296 116-164 (343)
229 TIGR02169 SMC_prok_A chromosom 40.6 3E+02 0.0064 37.5 14.2 24 1074-1097 1102-1126(1164)
230 KOG4302 Microtubule-associated 40.2 1.4E+02 0.003 38.5 10.0 67 270-336 104-177 (660)
231 KOG0933 Structural maintenance 40.1 1.1E+02 0.0024 40.7 9.1 115 218-340 739-857 (1174)
232 PF08317 Spc7: Spc7 kinetochor 39.9 4.3E+02 0.0093 31.1 13.6 42 67-108 50-94 (325)
233 cd03565 VHS_Tom1 VHS domain fa 39.4 3.2E+02 0.007 28.3 11.0 79 896-974 33-120 (141)
234 PF14868 DUF4487: Domain of un 39.4 1.3E+02 0.0027 38.2 9.5 60 553-612 492-555 (559)
235 KOG1962 B-cell receptor-associ 39.3 82 0.0018 35.0 6.9 62 232-293 149-210 (216)
236 PF00514 Arm: Armadillo/beta-c 38.8 50 0.0011 26.3 4.0 30 502-531 12-41 (41)
237 PF00790 VHS: VHS domain; Int 38.6 4.5E+02 0.0097 26.9 12.2 84 545-628 46-137 (140)
238 KOG4413 26S proteasome regulat 38.4 7.6E+02 0.016 29.5 26.6 131 503-633 83-227 (524)
239 KOG0995 Centromere-associated 38.0 2.1E+02 0.0045 36.1 10.7 87 221-340 236-322 (581)
240 PRK03918 chromosome segregatio 38.0 3.8E+02 0.0083 35.5 14.3 10 196-205 596-605 (880)
241 KOG1525 Sister chromatid cohes 38.0 1.4E+03 0.029 32.3 35.9 64 604-667 129-192 (1266)
242 KOG2973 Uncharacterized conser 37.9 73 0.0016 37.2 6.5 50 904-954 6-58 (353)
243 KOG2199 Signal transducing ada 37.7 1.7E+02 0.0036 35.3 9.4 94 875-973 24-122 (462)
244 PF12231 Rif1_N: Rap1-interact 37.5 6E+02 0.013 30.4 14.5 126 902-1027 176-329 (372)
245 COG3883 Uncharacterized protei 37.5 70 0.0015 36.6 6.3 55 246-300 36-90 (265)
246 KOG3687 Tuberin - Rap/ran-GTPa 37.2 1.2E+03 0.027 31.6 20.0 80 948-1027 438-521 (1697)
247 PF08713 DNA_alkylation: DNA a 36.9 5.4E+02 0.012 27.6 12.9 127 501-643 50-179 (213)
248 PF03224 V-ATPase_H_N: V-ATPas 36.9 4.1E+02 0.0089 30.8 12.8 182 902-1091 106-308 (312)
249 PF08581 Tup_N: Tup N-terminal 36.8 1.7E+02 0.0036 27.7 7.6 53 225-277 9-61 (79)
250 PF03224 V-ATPase_H_N: V-ATPas 36.5 3.8E+02 0.0082 31.1 12.4 108 890-1007 65-178 (312)
251 KOG4500 Rho/Rac GTPase guanine 36.4 9.3E+02 0.02 29.9 18.0 91 978-1071 314-412 (604)
252 KOG2149 Uncharacterized conser 35.7 5.2E+02 0.011 31.5 13.1 167 462-629 15-192 (393)
253 PF14662 CCDC155: Coiled-coil 35.3 3.5E+02 0.0075 29.8 10.7 17 93-109 19-35 (193)
254 PF14225 MOR2-PAG1_C: Cell mor 35.1 3.6E+02 0.0078 30.9 11.6 108 900-1013 110-222 (262)
255 smart00787 Spc7 Spc7 kinetocho 35.1 2.1E+02 0.0046 33.6 9.9 67 258-342 221-287 (312)
256 PF00038 Filament: Intermediat 33.8 4.5E+02 0.0097 30.3 12.4 111 184-300 35-152 (312)
257 KOG0250 DNA repair protein RAD 33.4 5.8E+02 0.013 34.7 14.1 14 41-54 164-181 (1074)
258 TIGR02338 gimC_beta prefoldin, 33.3 3.4E+02 0.0073 26.8 9.7 41 193-233 1-47 (110)
259 PF04111 APG6: Autophagy prote 33.2 2.3E+02 0.0049 33.4 9.8 19 324-342 118-136 (314)
260 KOG0971 Microtubule-associated 33.2 3.7E+02 0.0081 35.7 11.9 42 67-108 309-351 (1243)
261 PF05536 Neurochondrin: Neuroc 33.2 1.1E+03 0.024 29.9 17.3 261 498-795 1-268 (543)
262 KOG4807 F-actin binding protei 33.1 4.3E+02 0.0094 31.8 11.7 109 222-340 423-533 (593)
263 KOG2549 Transcription initiati 33.0 2.2E+02 0.0048 35.8 9.8 116 507-632 212-352 (576)
264 PF04849 HAP1_N: HAP1 N-termin 33.0 4.3E+02 0.0093 31.1 11.7 32 80-111 95-126 (306)
265 KOG0413 Uncharacterized conser 32.9 6.6E+02 0.014 34.0 14.0 175 901-1084 472-675 (1529)
266 KOG2549 Transcription initiati 32.9 1.9E+02 0.0041 36.3 9.2 65 747-811 279-352 (576)
267 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.1 1.1E+02 0.0023 31.3 6.1 32 230-261 6-37 (132)
268 PF03130 HEAT_PBS: PBS lyase H 31.8 40 0.00086 24.9 2.2 26 596-629 1-26 (27)
269 smart00185 ARM Armadillo/beta- 31.8 54 0.0012 25.3 3.1 31 938-968 10-40 (41)
270 PF09304 Cortex-I_coil: Cortex 31.3 1.5E+02 0.0032 29.6 6.5 32 266-297 41-72 (107)
271 PF10521 DUF2454: Protein of u 31.1 6.9E+02 0.015 28.7 13.2 33 503-535 120-152 (282)
272 PF14500 MMS19_N: Dos2-interac 31.0 8.5E+02 0.019 27.9 21.5 61 508-570 5-69 (262)
273 KOG0249 LAR-interacting protei 31.0 1.4E+02 0.0031 38.3 7.8 28 166-204 145-172 (916)
274 KOG2274 Predicted importin 9 [ 30.7 1.5E+03 0.032 30.6 17.2 234 760-1053 5-262 (1005)
275 KOG1078 Vesicle coat complex C 30.3 1.4E+03 0.031 30.3 26.1 101 539-643 243-343 (865)
276 COG5064 SRP1 Karyopherin (impo 30.2 6.3E+02 0.014 30.3 12.2 111 499-613 69-190 (526)
277 PF14197 Cep57_CLD_2: Centroso 29.9 2.1E+02 0.0045 26.3 6.9 20 269-288 47-66 (69)
278 TIGR03752 conj_TIGR03752 integ 29.5 1.7E+02 0.0036 36.2 8.0 19 216-234 76-94 (472)
279 COG4372 Uncharacterized protei 29.5 7.1E+02 0.015 30.2 12.6 90 195-295 81-170 (499)
280 PF11701 UNC45-central: Myosin 29.3 3.6E+02 0.0079 28.2 9.7 115 951-1075 16-138 (157)
281 KOG0273 Beta-transducin family 29.0 62 0.0013 39.5 4.3 45 154-202 8-54 (524)
282 KOG2005 26S proteasome regulat 28.6 3E+02 0.0066 35.4 10.0 111 895-1010 634-745 (878)
283 PRK10884 SH3 domain-containing 28.4 1.9E+02 0.0042 32.0 7.7 14 163-176 50-63 (206)
284 PF11865 DUF3385: Domain of un 28.3 2.4E+02 0.0052 29.8 8.2 29 582-610 12-41 (160)
285 KOG1293 Proteins containing ar 28.3 9.3E+02 0.02 31.2 14.1 101 914-1014 390-496 (678)
286 PF13815 Dzip-like_N: Iguana/D 28.3 1.8E+02 0.004 29.1 6.9 11 192-202 52-62 (118)
287 PF13870 DUF4201: Domain of un 27.9 5.7E+02 0.012 27.2 11.0 21 220-240 49-69 (177)
288 KOG0996 Structural maintenance 27.7 4.4E+02 0.0095 36.1 11.6 18 217-234 363-380 (1293)
289 PF10224 DUF2205: Predicted co 27.5 1.1E+02 0.0023 29.1 4.7 51 259-309 20-70 (80)
290 PF11701 UNC45-central: Myosin 27.2 1.8E+02 0.0038 30.6 6.9 108 895-1005 37-156 (157)
291 KOG2160 Armadillo/beta-catenin 27.2 8.1E+02 0.018 29.4 12.8 123 515-638 96-228 (342)
292 PF10498 IFT57: Intra-flagella 27.1 4.6E+02 0.01 31.5 11.1 84 246-338 264-347 (359)
293 PF08513 LisH: LisH; InterPro 26.9 56 0.0012 24.4 2.2 22 10-31 5-26 (27)
294 PF08064 UME: UME (NUC010) dom 26.8 3.4E+02 0.0074 26.7 8.4 32 581-614 57-88 (107)
295 PF09324 DUF1981: Domain of un 26.7 1.6E+02 0.0036 27.8 5.9 65 578-642 15-82 (86)
296 PF04858 TH1: TH1 protein; In 26.6 1.7E+02 0.0036 37.4 7.6 130 843-984 415-552 (584)
297 COG4912 Predicted DNA alkylati 26.5 2.4E+02 0.0051 31.7 7.8 81 525-609 102-183 (222)
298 KOG1837 Uncharacterized conser 26.3 3E+02 0.0066 38.5 10.1 75 500-574 1539-1615(1621)
299 PF12329 TMF_DNA_bd: TATA elem 25.7 2.4E+02 0.0051 26.2 6.6 39 262-300 5-43 (74)
300 PF11180 DUF2968: Protein of u 25.7 3.4E+02 0.0073 29.9 8.6 62 181-254 70-132 (192)
301 cd00197 VHS_ENTH_ANTH VHS, ENT 25.7 4.8E+02 0.01 25.5 9.3 27 950-976 47-73 (115)
302 TIGR02168 SMC_prok_B chromosom 25.3 6.4E+02 0.014 34.2 13.5 13 703-715 1040-1052(1179)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 25.3 4.8E+02 0.01 25.5 9.2 71 897-967 33-113 (115)
304 KOG2011 Sister chromatid cohes 25.2 5E+02 0.011 35.4 11.6 124 511-643 296-430 (1048)
305 PF07106 TBPIP: Tat binding pr 25.1 3.2E+02 0.0069 28.9 8.4 8 159-166 7-14 (169)
306 KOG1837 Uncharacterized conser 25.1 2.1E+02 0.0046 40.0 8.4 64 910-973 1550-1615(1621)
307 PF08826 DMPK_coil: DMPK coile 25.1 2.6E+02 0.0057 25.2 6.4 27 260-286 30-56 (61)
308 PF08167 RIX1: rRNA processing 25.0 8.3E+02 0.018 25.7 15.3 46 496-541 19-64 (165)
309 PF15254 CCDC14: Coiled-coil d 24.7 2.5E+02 0.0055 36.6 8.5 59 280-339 498-556 (861)
310 PF11932 DUF3450: Protein of u 24.7 9.4E+02 0.02 27.1 12.6 13 228-240 43-55 (251)
311 KOG2264 Exostosin EXT1L [Signa 24.5 2.4E+02 0.0051 35.4 7.9 114 154-292 29-151 (907)
312 PF06637 PV-1: PV-1 protein (P 24.5 3E+02 0.0065 33.1 8.5 40 252-291 353-392 (442)
313 COG1196 Smc Chromosome segrega 24.4 8.1E+02 0.018 34.0 14.2 31 79-109 671-701 (1163)
314 KOG4413 26S proteasome regulat 24.3 1E+03 0.023 28.4 12.6 72 898-969 79-157 (524)
315 KOG2933 Uncharacterized conser 24.1 8.9E+02 0.019 28.7 12.1 81 940-1021 129-213 (334)
316 KOG2077 JNK/SAPK-associated pr 24.0 2.4E+02 0.0051 35.5 7.8 73 218-290 299-378 (832)
317 COG5185 HEC1 Protein involved 23.9 4.1E+02 0.0089 32.8 9.6 14 325-338 343-356 (622)
318 PF12329 TMF_DNA_bd: TATA elem 23.5 4E+02 0.0086 24.7 7.6 26 259-284 37-62 (74)
319 cd06561 AlkD_like A new struct 23.4 3E+02 0.0065 29.2 8.0 74 943-1020 108-182 (197)
320 PF10168 Nup88: Nuclear pore c 23.1 5.3E+02 0.012 33.9 11.4 26 274-299 637-662 (717)
321 TIGR01843 type_I_hlyD type I s 22.7 2.8E+02 0.006 33.1 8.4 17 89-105 81-97 (423)
322 cd07064 AlkD_like_1 A new stru 22.5 1E+03 0.023 26.0 12.4 133 500-649 44-179 (208)
323 PF08581 Tup_N: Tup N-terminal 22.5 5E+02 0.011 24.6 8.1 17 322-338 60-76 (79)
324 PF07106 TBPIP: Tat binding pr 22.5 2.7E+02 0.0058 29.5 7.3 30 266-295 76-105 (169)
325 TIGR02168 SMC_prok_B chromosom 22.5 7.5E+02 0.016 33.6 13.3 18 1079-1096 1123-1140(1179)
326 PF03962 Mnd1: Mnd1 family; I 22.4 3.6E+02 0.0079 29.4 8.3 21 143-163 17-37 (188)
327 PF03915 AIP3: Actin interacti 22.4 2E+02 0.0043 35.3 7.0 12 195-206 161-172 (424)
328 PF04012 PspA_IM30: PspA/IM30 22.3 1E+03 0.023 26.0 12.3 43 195-237 26-68 (221)
329 PF05529 Bap31: B-cell recepto 22.3 2.6E+02 0.0057 30.1 7.3 28 275-302 160-187 (192)
330 KOG4360 Uncharacterized coiled 22.3 4.8E+02 0.01 32.7 9.8 59 259-339 202-260 (596)
331 PF11559 ADIP: Afadin- and alp 21.9 5.3E+02 0.011 26.7 9.2 64 194-257 40-103 (151)
332 KOG2129 Uncharacterized conser 21.9 9.4E+02 0.02 29.4 11.9 22 320-341 247-268 (552)
333 KOG4524 Uncharacterized conser 21.7 3.1E+02 0.0068 36.6 8.7 115 899-1013 801-937 (1014)
334 KOG4673 Transcription factor T 21.6 5.3E+02 0.011 33.4 10.2 85 241-340 423-509 (961)
335 KOG0963 Transcription factor/C 21.6 9.6E+02 0.021 30.8 12.5 97 244-340 192-306 (629)
336 PRK09039 hypothetical protein; 21.5 3.8E+02 0.0082 31.9 9.0 12 203-214 42-53 (343)
337 PRK15345 type III secretion sy 21.4 1E+03 0.022 28.3 11.8 48 580-629 271-323 (326)
338 KOG1848 Uncharacterized conser 21.1 2.5E+03 0.055 30.0 17.7 182 746-970 987-1187(1610)
339 PF12718 Tropomyosin_1: Tropom 20.9 7.4E+02 0.016 25.8 9.9 95 225-341 26-130 (143)
340 COG1698 Uncharacterized protei 20.7 2.8E+02 0.0061 26.9 6.0 60 895-954 11-73 (93)
341 PRK01156 chromosome segregatio 20.7 8E+02 0.017 32.8 12.8 19 321-339 471-489 (895)
342 TIGR03752 conj_TIGR03752 integ 20.5 2.7E+02 0.0059 34.5 7.5 35 218-252 71-105 (472)
343 PF12726 SEN1_N: SEN1 N termin 20.2 1.1E+03 0.024 30.8 13.7 204 900-1115 119-344 (727)
344 PF08614 ATG16: Autophagy prot 20.2 2.4E+02 0.0052 30.6 6.5 49 247-295 115-163 (194)
345 cd03569 VHS_Hrs_Vps27p VHS dom 20.1 9.8E+02 0.021 24.8 10.9 51 580-630 84-135 (142)
346 PRK02224 chromosome segregatio 20.0 7.6E+02 0.016 32.9 12.3 53 248-300 349-401 (880)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-53 Score=519.76 Aligned_cols=747 Identities=20% Similarity=0.188 Sum_probs=596.8
Q ss_pred HHhhhcCCCCCCCccccccCCCCCCCchhHHHhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHhhhccCcccccccCCCCC
Q 001018 44 LKEFFSDPSHFPPDLITRFNSLRVADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKKSDSSLENLNESNENN 123 (1188)
Q Consensus 44 Lr~fFsnp~~f~~~~~~r~~s~~~~D~~~~~~~~~~~~ekvavle~ELR~a~e~I~~Lr~~l~~~~~~~~~~~~~~~~~~ 123 (1188)
.+++|..+++|+++.++|++.+..+++.-+.. -+...|+-.|+.+.++..+......-.+....+. ..+..+...
T Consensus 3 ~k~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~ 77 (759)
T KOG0211|consen 3 AKELRHIFSNLGSEKISRANEIRLVPSLILFC----PDIPAAVDKVQFPLFQKVTEDQENQVQKKSVASS-FKSLEDDPN 77 (759)
T ss_pred hhhhccccccccchhhhhhhhhhcCCchHhhc----CChHHHHHHHhhhhhhHHHhhcccccccCCcchh-hcccccCcc
Confidence 58899999999999999999999999999888 7789999999999999999877665554433322 111110000
Q ss_pred CCCCCcccccccccccccCCCCCChhhhhHhHHHHHHHHHHcCCcccceeccccccCCCCCCCCCCCCCCChHHHHHHHH
Q 001018 124 HGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQ 203 (1188)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ikp~E~r~LN~lv~eYLl~~~Ykltsitf~dE~~dqd~e~W~dv~~~~P~~L~~~yr~ 203 (1188)
-....+ +.-..+..+..+-.+.....++.-|..+..|.... |+..|+|..|+.+++++.|.+...+.+..+..+|.+
T Consensus 78 ~~~~~~-ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~ 154 (759)
T KOG0211|consen 78 EDSLYP-IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGP 154 (759)
T ss_pred cccccc-HHHHhhccCchhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhccchhHHHHHHHHHhcccchhccch
Confidence 001111 33344455555667788889999999999999988 999999999999999999999988888777778888
Q ss_pred hhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHH
Q 001018 204 YLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRR 283 (1188)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1188)
++.|......+.++...||+...|..|.|....+.+. |+
T Consensus 155 ~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~-----------------------------------~~------ 193 (759)
T KOG0211|consen 155 EYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLP-----------------------------------KE------ 193 (759)
T ss_pred hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------hH------
Confidence 8888888888888877776544444333332111000 00
Q ss_pred HhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccccchhh
Q 001018 284 ELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAKSTNASDSLGSVYSESMQTEEKV 363 (1188)
Q Consensus 284 ~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1188)
. ..++-..+ ++. .+
T Consensus 194 -~--------------------------------------~~~~lv~l------~~~---l~------------------ 207 (759)
T KOG0211|consen 194 -K--------------------------------------LREHLVPL------LKR---LA------------------ 207 (759)
T ss_pred -H--------------------------------------HHHHHHHH------HHH---cc------------------
Confidence 0 00000000 000 00
Q ss_pred hccccccccccCCcccccCccccccccccCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCCCCCCc
Q 001018 364 VEVDEDKTVLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKENIASENSENVPNLNDESPLKDSGLPLQ 443 (1188)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1188)
.+ ++.+
T Consensus 208 -----------------~~--d~~~------------------------------------------------------- 213 (759)
T KOG0211|consen 208 -----------------TG--DWFQ------------------------------------------------------- 213 (759)
T ss_pred -----------------ch--hhhh-------------------------------------------------------
Confidence 00 0000
Q ss_pred cccchhhhhhcccchhHHHHHHhhhcccchhcchhhHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 001018 444 SDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIM 523 (1188)
Q Consensus 444 ~~~~~~~~~~~~~~~~~v~lls~~lP~Ivp~V~~~~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa 523 (1188)
+..++||+++.+|++.- +..+|.+++.++..+|+|++||||++++
T Consensus 214 ------------sr~sacglf~~~~~~~~-----------------------~~~vk~elr~~~~~lc~d~~~~Vr~~~a 258 (759)
T KOG0211|consen 214 ------------SRLSACGLFGKLYVSLP-----------------------DDAVKRELRPIVQSLCQDDTPMVRRAVA 258 (759)
T ss_pred ------------cchhhhhhhHHhccCCC-----------------------hHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 12448899998887754 3558999999999999999999999999
Q ss_pred HHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh-hhhhhhHHHHHHhhcCCcHHHHHHHHH
Q 001018 524 DACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE-IRDSLILSIVQQLVEDSATVVREAAAR 602 (1188)
Q Consensus 524 ~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e-~r~slLL~~LqqL~eD~e~~VR~aAAk 602 (1188)
+.|+.||+.++.+.+.++++|.+..+.+|++|.||+++.++|+.+.+++... ...+.+.+.+.++.+|.+|+||+++++
T Consensus 259 ~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~ 338 (759)
T KOG0211|consen 259 SNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVAD 338 (759)
T ss_pred hhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999877 777778999999999999999999999
Q ss_pred HHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCc--cccch
Q 001018 603 NLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPL--SGVEG 680 (1188)
Q Consensus 603 sL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~--~~v~~ 680 (1188)
.+..+.+.++++-...+..+.+..+++|.+++||.+.+... ..++...+...+. ....+.+++.++.+.++ .+|+.
T Consensus 339 ~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~-~~l~~~l~~~~~~-~i~~~~ilp~~~~lv~d~~~~vr~ 416 (759)
T KOG0211|consen 339 KFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKV-QKLACYLNASCYP-NIPDSSILPEVQVLVLDNALHVRS 416 (759)
T ss_pred hhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcch-HHHhhhcCccccc-ccchhhhhHHHHHHHhcccchHHH
Confidence 99999999999656678899999999999999999998876 6666655421110 11122333444555554 67777
Q ss_pred hhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchh-hhhhhhcCCCCccchhhHHh
Q 001018 681 SVESHL----RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSS-LLELYAGGHIEWPAFEWMHV 755 (1188)
Q Consensus 681 ~la~~l----~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~-ll~l~~~~~~~w~~~~wl~~ 755 (1188)
++++.. +.+|++. ++..++|.+...+. +++++|+++.. .+..+ ...++|+|++|+++
T Consensus 417 a~a~~~~~~~p~~~k~~---------ti~~llp~~~~~l~--------de~~~V~lnli~~ls~~-~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 417 ALASVITGLSPILPKER---------TISELLPLLIGNLK--------DEDPIVRLNLIDKLSLL-EEVNDVIGISTVSN 478 (759)
T ss_pred HHhccccccCccCCcCc---------CccccChhhhhhcc--------hhhHHHHHhhHHHHHHH-HhccCcccchhhhh
Confidence 776665 6778877 89999998887666 34578888622 22222 36788999999999
Q ss_pred hhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhh
Q 001018 756 DCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGE 835 (1188)
Q Consensus 756 ~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~ 835 (1188)
+.+|.+.+++ +|.+||||.++.+++|.+|.++|.+|++.++-+.++.|+.|.++. | |.++.+.+..+. -..|.
T Consensus 479 slLp~i~el~---~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~-I-r~~aa~~l~~l~--~~~G~ 551 (759)
T KOG0211|consen 479 SLLPAIVELA---EDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS-I-REAAARNLPALV--ETFGS 551 (759)
T ss_pred hhhhhhhhhc---cchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH-H-HHHHHHHhHHHH--HHhCc
Confidence 9999999998 999999999999999999999999999999999999999998753 3 777766666553 22489
Q ss_pred hhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCCh
Q 001018 836 RLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNI 915 (1188)
Q Consensus 836 ~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~p 915 (1188)
+|+...++|..++..+. .||++|+++.++.+ .+..+++.+.+.++++|+++++++|++|
T Consensus 552 ~w~~~~~i~k~L~~~~q--------~~y~~R~t~l~si~-------------~la~v~g~ei~~~~Llp~~~~l~~D~va 610 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQ--------DNYLVRMTTLFSIH-------------ELAEVLGQEITCEDLLPVFLDLVKDPVA 610 (759)
T ss_pred chhHHHhhHHHHHHhcC--------cccchhhHHHHHHH-------------HHHHHhccHHHHHHHhHHHHHhccCCch
Confidence 99999999988873333 26999999865532 2222345599999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhH
Q 001018 916 DMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEA 995 (1188)
Q Consensus 916 nVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~v 995 (1188)
|||||+|+.|..+.+.+........|+|++++|.+|++.||||+++.|++.+....-......+...++.+++.+..+..
T Consensus 611 nVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~~~~a~~~~~~~~~ 690 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSLDVRDKKQLIAFLEQDSHVL 690 (759)
T ss_pred hhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888889999999999999999
Q ss_pred HHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHH
Q 001018 996 TVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLL 1074 (1188)
Q Consensus 996 R~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~ 1074 (1188)
.+..++++.+-.|+.+.++|+ ...+ .++++++++||..+.....++.+|++.++.
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~d~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (759)
T KOG0211|consen 691 EVEIIKTKLVKGPNATLRFRDEFVIK------------------------SFEAITAKSCCKRKQKWSKNQNLPAICALR 746 (759)
T ss_pred HHHHHHHHhhcccccCcccccccchh------------------------hhhhhhHHHHHhhhHHHHHhhcchHHHHhh
Confidence 999999999999999999988 5544 578899999999999999999999999999
Q ss_pred hccCCCChHHHH
Q 001018 1075 KDADSLDPAHKE 1086 (1188)
Q Consensus 1075 ~D~d~l~~~~k~ 1086 (1188)
+|.+.|+|.|..
T Consensus 747 ~~~~~l~~~~~~ 758 (759)
T KOG0211|consen 747 KDDECLSPEHFV 758 (759)
T ss_pred cCcccCCccccC
Confidence 999999999964
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=378.72 Aligned_cols=512 Identities=17% Similarity=0.162 Sum_probs=403.5
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhh
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDS 579 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~s 579 (1188)
+...++.+.+..+.++...|.+++..|..+|-.+|.++++.+|+|+|.+.+ ++.++|+..+|+.+|.+.+++|+..+.+
T Consensus 80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~ 158 (759)
T KOG0211|consen 80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAH 158 (759)
T ss_pred ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHH
Confidence 677889999999999999999999999999999999999999999999988 8999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCC--ChhHHHHHHHhhHHHHHhcc-cchHH
Q 001018 580 LILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDP--SGVVVETTFKELLPAVINWG-SKLDH 656 (1188)
Q Consensus 580 lLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~--s~~Vr~aa~~~Llpala~~~-~~~~~ 656 (1188)
.+++++++++.+++|.||+++++++..++..++.+.-..++.+++..|..+. +.++.+|. .+.-.|...- ...+.
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacg--lf~~~~~~~~~~~vk~ 236 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACG--LFGKLYVSLPDDAVKR 236 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhh--hhHHhccCCChHHHHH
Confidence 9999999999999999999999999999999999877778888888888773 22333333 3333334332 12334
Q ss_pred HHHHHHHHHhhhhccCCCccccchhhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccccc
Q 001018 657 ILRVLLSYILSSAQRCPPLSGVEGSVESHL----RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVF 732 (1188)
Q Consensus 657 ll~~ll~~L~~~v~~lp~~~~v~~~la~~l----~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl 732 (1188)
.++.++.+++.+ +.||+ +.+.++.+ ..++.+. ....++|. +..+. .|++|+++..
T Consensus 237 elr~~~~~lc~d--~~~~V---r~~~a~~l~~~a~~~~~~~---------~~s~v~~~-~~~L~------~DdqdsVr~~ 295 (759)
T KOG0211|consen 237 ELRPIVQSLCQD--DTPMV---RRAVASNLGNIAKVLESEI---------VKSEVLPT-LIQLL------RDDQDSVREA 295 (759)
T ss_pred HHHHHHHhhccc--cchhh---HHHHHhhhHHHHHHHHHHH---------HHhhccHH-Hhhhh------hcchhhHHHH
Confidence 555666676665 45552 32223222 3455544 56667774 44444 4667766655
Q ss_pred c----hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhC
Q 001018 733 P----SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVG 808 (1188)
Q Consensus 733 ~----~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~ 808 (1188)
+ ..+.++|... +-..+.+.|.+++.. +|++||||+++++.+..|+..||.+-++..+.|.|+.+++
T Consensus 296 a~~~~~~l~~l~~~~-------~d~~~~~~~~l~~~~---~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~ 365 (759)
T KOG0211|consen 296 AVESLVSLLDLLDDD-------DDVVKSLTESLVQAV---EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLK 365 (759)
T ss_pred HHHHHHHHHHhcCCc-------hhhhhhhhHHHHHHh---cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhc
Confidence 3 4445554321 136678999999996 9999999999999999999999999999999999999999
Q ss_pred CccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccc-cccccchhhhHHH
Q 001018 809 DNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMK-ENHTVKCNAEIVN 887 (1188)
Q Consensus 809 D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~-~~W~v~~~p~ll~ 887 (1188)
|++.. .|.++...+.++.. . ....+..-.....+| .+++.++.+.+++ +.|.. +.. ..
T Consensus 366 ~~~~e--~r~a~a~~~~~l~~---~---l~~~~~~~i~~~~il----------p~~~~lv~d~~~~vr~a~a-~~~--~~ 424 (759)
T KOG0211|consen 366 DEEWE--VRYAIAKKVQKLAC---Y---LNASCYPNIPDSSIL----------PEVQVLVLDNALHVRSALA-SVI--TG 424 (759)
T ss_pred chhhh--hhHHhhcchHHHhh---h---cCcccccccchhhhh----------HHHHHHHhcccchHHHHHh-ccc--cc
Confidence 99643 13333322222211 0 000000001112222 3677777777766 22222 111 11
Q ss_pred HHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHH---HHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHH
Q 001018 888 AVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAA---NLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAF 964 (1188)
Q Consensus 888 ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naa---k~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl 964 (1188)
..+.++ .+.+.++++|.+..+.+|..|.||.|++ ..+..+.+++|..+++++.+|+|.+|+.|..|+||.++++++
T Consensus 425 ~~p~~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~i 503 (759)
T KOG0211|consen 425 LSPILP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYI 503 (759)
T ss_pred cCccCC-cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHH
Confidence 114444 4889999999999999999999999999 888888999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHhcCC---------------------------------------ChhHHHHHHHHHHH
Q 001018 965 GAVAQHFKNDMIVDKIRVQMDAFLEDG---------------------------------------SHEATVAVVRALAV 1005 (1188)
Q Consensus 965 ~~LA~~l~~e~~~ekl~~~~~slL~D~---------------------------------------~~~vR~~vv~al~~ 1005 (1188)
+.++.++|.++|.++..++|++|+.|. +|.+|+++++++..
T Consensus 504 p~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~ 583 (759)
T KOG0211|consen 504 PQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHE 583 (759)
T ss_pred HHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHH
Confidence 999999999999999999999999995 48999999999999
Q ss_pred hcccCCHHHHH-HHHHHHHHhhc--CCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018 1006 AVPHTTERLRD-YLLSKIFQLSA--VPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus 1006 l~p~~~~~~r~-~IlP~L~~L~~--vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
++++++.++.. +++|.+..|+. +||+ |+++||.|-...+.|++. ...+.|+|.+..|.+|.|
T Consensus 584 la~v~g~ei~~~~Llp~~~~l~~D~vanV------R~nvak~L~~i~~~L~~~-----~~~~~v~pll~~L~~d~~ 648 (759)
T KOG0211|consen 584 LAEVLGQEITCEDLLPVFLDLVKDPVANV------RINVAKHLPKILKLLDES-----VRDEEVLPLLETLSSDQE 648 (759)
T ss_pred HHHHhccHHHHHHHhHHHHHhccCCchhh------hhhHHHHHHHHHhhcchH-----HHHHHHHHHHHHhccCcc
Confidence 99999999988 99999999999 9999 999999999999888754 788899999999999887
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.2e-11 Score=148.44 Aligned_cols=513 Identities=15% Similarity=0.147 Sum_probs=311.4
Q ss_pred hhcCCChhhHHHHHHHH-HHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001018 491 IERHPDTSTRDSLTHTL-FNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELA 569 (1188)
Q Consensus 491 a~~h~~~~~R~~Ll~ll-~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La 569 (1188)
.+...+.++|.+|...+ .-..+.+.+.+|+.+++-+..||+...++ .+-||+|++.+..++..+.-|-.+.=-+..+.
T Consensus 68 ~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 68 HWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhh
Confidence 44455678888887544 44557788999999999999999999999 99999999999999888999998888888888
Q ss_pred hhhChhhhh--hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc----hhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 570 EFVRPEIRD--SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT----DKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 570 ~~vg~e~r~--slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~----d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
..+|..... ..++++|.+-+.|.+..||-++++.++.++...+++ +++..++|-++..+.+..+.=-..+++..
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 888876443 348999999999998889999999999999999732 24556667555444433211111112222
Q ss_pred HHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001018 644 LPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSS 723 (1188)
Q Consensus 644 lpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s 723 (1188)
+-.+..++.....+++..+..++...-. +++ .-.-+++||.. +++-++- +.+. .|
T Consensus 227 l~~l~El~e~~pk~l~~~l~~ii~~~l~----------Ia~---n~~l~~~~R~~----ALe~ivs-~~e~----Ap--- 281 (1075)
T KOG2171|consen 227 LEALIELLESEPKLLRPHLSQIIQFSLE----------IAK---NKELENSIRHL----ALEFLVS-LSEY----AP--- 281 (1075)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHH----------Hhh---cccccHHHHHH----HHHHHHH-HHHh----hH---
Confidence 2444444333334444444444322000 111 12235566766 4444433 1111 11
Q ss_pred CCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCC-CCcHH------------HHHHHHHHHHHHHHhh
Q 001018 724 VSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLP-EKEDN------------LRNRITKFLLAVSKQF 790 (1188)
Q Consensus 724 ~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~-D~sWr------------VR~Aia~~l~~La~~f 790 (1188)
...+..+ . +.+.++|.+..++.-.. |..|. --.+..+.+..+|-.+
T Consensus 282 -----------~~~k~~~---------~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L 340 (1075)
T KOG2171|consen 282 -----------AMCKKLA---------L-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL 340 (1075)
T ss_pred -----------HHhhhch---------h-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC
Confidence 1111100 0 33344555544442222 22331 1122233344444444
Q ss_pred CHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhh
Q 001018 791 GDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVE 870 (1188)
Q Consensus 791 G~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~ 870 (1188)
|.... +|.++. ++..|+.
T Consensus 341 ~g~~v----~p~~~~---------------------------------------------------------~l~~~l~- 358 (1075)
T KOG2171|consen 341 GGKQV----LPPLFE---------------------------------------------------------ALEAMLQ- 358 (1075)
T ss_pred Chhhe----hHHHHH---------------------------------------------------------HHHHHhc-
Confidence 43221 222221 3333332
Q ss_pred cccccccccchhhhHHHHHHhhh--c---hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh---hhhhh
Q 001018 871 GTMKENHTVKCNAEIVNAVRFLC--T---FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT---SMQVL 942 (1188)
Q Consensus 871 ~s~~~~W~v~~~p~ll~ai~~Lg--~---~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l---s~~Vl 942 (1188)
..+|.--|+. +.||..++ . -......|+|+++.++.||.|.||-++.+.+.++..-+.++.- .+.|.
T Consensus 359 ---S~~w~~R~Aa--L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 359 ---STEWKERHAA--LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred ---CCCHHHHHHH--HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 2346665565 66665553 1 2345688999999999999999999999999999999888644 46788
Q ss_pred hHHHhhccCCC-cchHHHHHHHHHHHHHhhchHHHH---HHHHH-HHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-
Q 001018 943 PALVTLGSDQN-LNVKYASIDAFGAVAQHFKNDMIV---DKIRV-QMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD- 1016 (1188)
Q Consensus 943 PaLv~LasD~d-~dVR~aaieAl~~LA~~l~~e~~~---ekl~~-~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~- 1016 (1188)
|+|+.+..|+. .+|...+.-|+--..+-+..+.+. +.++. .+..++.-+.+.++-.++-|++.++-.....|+.
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY 513 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY 513 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH
Confidence 89998777775 488888888876666665554332 32332 3333555667899999999999999999999988
Q ss_pred H--HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHH----HhccCCCChHHHHHHHH
Q 001018 1017 Y--LLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNL----LKDADSLDPAHKEALEI 1090 (1188)
Q Consensus 1017 ~--IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L----~~D~d~l~~~~k~~l~~ 1090 (1188)
+ +.|.|.+....++- .+ ++++...-.+++..+... ++++-....--+.++.| -+|.+.-||...-.+..
T Consensus 514 ~d~~Mp~L~~~L~n~~~-~d---~r~LrgktmEcisli~~A-VGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADD-KD---LRELRGKTMECLSLIARA-VGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred HHHHHHHHHHHHhCCCc-hh---hHHHHhhHHHHHHHHHHH-hhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 4 99999998877774 11 333322225666655433 22222222222222222 23555555555544444
Q ss_pred HH--hhccCCchhhh-hhhhhhhcccccccccccc
Q 001018 1091 IM--KDRSGGTLETI-SKVMGAHLGITSSVTSFFG 1122 (1188)
Q Consensus 1091 i~--ke~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1122 (1188)
.- -+--|-.|.-+ .-+|+.-+--+...-.++|
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~ 623 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL 623 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC
Confidence 43 33346667665 5566776666655544444
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.7e-09 Score=132.84 Aligned_cols=463 Identities=19% Similarity=0.215 Sum_probs=288.1
Q ss_pred HHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhC---chhhHhhHHHHHHHHh-hcCchhHHHHHHHHHHHHHhhhChhhh
Q 001018 503 LTHTLFNLI-KRPDEKQRRIIMDACVTLAKNVG---EMRTEMELLPQCWEQI-NHMYEERRLLVAQSCGELAEFVRPEIR 577 (1188)
Q Consensus 503 Ll~ll~nLi-Kdddp~vRr~aa~~l~~iA~~lg---~ert~~ELLP~l~eli-~Dd~dEVRlLvAescg~La~~vg~e~r 577 (1188)
++..|..+. .-.+|++|..|+==+..+....= +..+++-|...+-+.+ ....+.||...++...+++....++.-
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W 116 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW 116 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccch
Confidence 333343333 45778888887755544443221 2455555666565533 446899999999999999998877733
Q ss_pred hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchh--hhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhccc---
Q 001018 578 DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDK--YFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGS--- 652 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~--~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~--- 652 (1188)
.-+|+.|.+-..+..+--|++|..-|..+...+++... ...+.++|.+-+.|++..||.+|+..+ .+|+....
T Consensus 117 -Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~-~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 117 -PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL-GAFAEYLENNK 194 (1075)
T ss_pred -HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHH-HHHHHHhccch
Confidence 44699999999999999999999999999999998765 347899999999999999999999888 77777663
Q ss_pred chHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccccc
Q 001018 653 KLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVF 732 (1188)
Q Consensus 653 ~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl 732 (1188)
...+..+.++|.++..++++.. .|+++ +....+-.+-+ +.++.| .++
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~--------------~~d~~---------~a~~~l~~l~E-l~e~~p---------k~l 241 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQ--------------DGDDD---------AAKSALEALIE-LLESEP---------KLL 241 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhh--------------ccchH---------HHHHHHHHHHH-HHhhch---------HHH
Confidence 2224445566665544333322 11211 11122211111 111111 111
Q ss_pred chhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHh---hCHHH--HHHHHHHHHHHHh
Q 001018 733 PSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQ---FGDSY--LTHIMLPVFMVAV 807 (1188)
Q Consensus 733 ~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~---fG~e~--t~~~LlP~fl~lL 807 (1188)
. -....++-...++++. ++-.-.+|..+.+.+-.+++. .-+-. ....|+|..+.++
T Consensus 242 ~------------------~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 242 R------------------PHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred H------------------HHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 1 0112233333344422 344455677777776666654 11111 3445677777777
Q ss_pred CCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhh------hHHHHHHHhhcccccccccch
Q 001018 808 GDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQL------ADYLRKLLVEGTMKENHTVKC 881 (1188)
Q Consensus 808 ~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l------~nyL~rLt~~~s~~~~W~v~~ 881 (1188)
.|-.+. .+|...-.+- +...- ...+-|+.+
T Consensus 303 te~~~D---------------------~ew~~~d~~d-----------ed~~~~~~~~A~~~lDrlA~------------ 338 (1075)
T KOG2171|consen 303 TEEEDD---------------------DEWSNEDDLD-----------EDDEETPYRAAEQALDRLAL------------ 338 (1075)
T ss_pred CCcccc---------------------hhhccccccc-----------cccccCcHHHHHHHHHHHHh------------
Confidence 654321 1222211100 00000 112222222
Q ss_pred hhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh--hhhhhhHHHhhccCCCcchHHH
Q 001018 882 NAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT--SMQVLPALVTLGSDQNLNVKYA 959 (1188)
Q Consensus 882 ~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l--s~~VlPaLv~LasD~d~dVR~a 959 (1188)
.||+ +.+...+++++-.|+.++..--|.++.-.+..+++.-+.... -.+|+|.+....+||+.+||||
T Consensus 339 ---------~L~g-~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~A 408 (1075)
T KOG2171|consen 339 ---------HLGG-KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYA 408 (1075)
T ss_pred ---------cCCh-hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 1333 566678999999999999999999999999999987665433 3678999999999999999999
Q ss_pred HHHHHHHHHHhhchH---HHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhc---CCCC
Q 001018 960 SIDAFGAVAQHFKND---MIVDKIRVQMDAFLEDG-SHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSA---VPSS 1031 (1188)
Q Consensus 960 aieAl~~LA~~l~~e---~~~ekl~~~~~slL~D~-~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~---vpN~ 1031 (1188)
+..|+|.+++.+.++ ...+++.|.+...++|+ ++.+....+.++--....++...+. |+=+.+.++-. .++.
T Consensus 409 A~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~ 488 (1075)
T KOG2171|consen 409 ALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSK 488 (1075)
T ss_pred HHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999876 46688888999999886 5577777777777777788887777 43333321222 2222
Q ss_pred ChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccCC
Q 001018 1032 SSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADS 1079 (1188)
Q Consensus 1032 ~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~ 1079 (1188)
+.+ |-.+..++..+..+--..++ .-.+.+.|.|++.+...++
T Consensus 489 -~~v--~e~vvtaIasvA~AA~~~F~---pY~d~~Mp~L~~~L~n~~~ 530 (1075)
T KOG2171|consen 489 -PYV--QEQAVTAIASVADAAQEKFI---PYFDRLMPLLKNFLQNADD 530 (1075)
T ss_pred -hhH--HHHHHHHHHHHHHHHhhhhH---hHHHHHHHHHHHHHhCCCc
Confidence 111 43454455444433222222 3345688999997765654
No 5
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.32 E-value=2.4e-10 Score=147.73 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
-+..|...++|++|+||+.|+..|..+. + .+.+|.+..+++|++++||..++++++.++..... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----P----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----c----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 3446667778999999999999988764 3 34567677778999999999999999988654432 2
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+.|.++..|++++||.+|+..|..+.. ++ ...|..++.|+.+.||.+|+..|
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL 738 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRAL 738 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHH
Confidence 345566778999999999999988652 11 23567789999999999986655
No 6
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.09 E-value=2.2e-08 Score=125.37 Aligned_cols=422 Identities=16% Similarity=0.148 Sum_probs=272.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhc-----------------------------
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINH----------------------------- 552 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~D----------------------------- 552 (1188)
.+++|+..++.+ +|+.|+.|-+-|......+-|+-..+.|-++|..+..-
T Consensus 266 ~~Rnlil~Mi~r-dPs~RlSAedyL~~yrG~~FP~yFy~FL~~Y~~~~~~~~~~~p~~~~~~~gs~i~d~~~~~~~p~n~ 344 (1431)
T KOG1240|consen 266 SLRNLILSMIQR-DPSKRLSAEDYLQKYRGLVFPEYFYSFLYDYLDRFVPLTTSTPISDNTCTGSTIEDNVKLLDGPTNK 344 (1431)
T ss_pred cHHHHHHHHHcc-CchhccCHHHHHHhhhccccHHHHHHHHHHHHHhcCCccccCccccccccCcccccccccccCcccc
Confidence 455566666644 69999999999999888888999999999888543221
Q ss_pred ------------------------CchhHHHHHHHHHHH----HHhh-----hCh-----------------hhhhhhhH
Q 001018 553 ------------------------MYEERRLLVAQSCGE----LAEF-----VRP-----------------EIRDSLIL 582 (1188)
Q Consensus 553 ------------------------d~dEVRlLvAescg~----La~~-----vg~-----------------e~r~slLL 582 (1188)
-.||.-.-.-.+++- +-.. +++ +...-+++
T Consensus 345 ~~~~~~~~~h~ln~~~~~~~~~~~S~De~~~~~~~al~~~r~~~~~l~~~~dl~~~~q~~~~~~~~~~~~~~~~ga~l~v 424 (1431)
T KOG1240|consen 345 IYRDFSQICHCLNFPLIKDGGTITSSDEIIDSISKALEFSRHLIENLDVIQDLKPEKQLWTARSSPNIKDPKEEGAVLFV 424 (1431)
T ss_pred hhhhhhccccccccccccccccccCCcHHHHHHHHHHhhhhhhcccchhhhccchHHhcccccCCcccCCccccceeeeH
Confidence 123343333333331 0000 100 11122355
Q ss_pred HHHHH-hhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHH
Q 001018 583 SIVQQ-LVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVL 661 (1188)
Q Consensus 583 ~~Lqq-L~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~l 661 (1188)
+++-. +=.-+...-+.+|.+=|..++..++++++..-++|+|+.|+.|+.+.||.+|...+ ++ +
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tl----t~-----------~ 489 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETL----TE-----------L 489 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHH----HH-----------H
Confidence 55544 33456667788999999999999999999999999999999999999999995554 11 1
Q ss_pred HHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhh
Q 001018 662 LSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYA 741 (1188)
Q Consensus 662 l~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~ 741 (1188)
++- +++.|.- + .
T Consensus 490 L~~----Vr~~~~~---------------------------------------------------------d---a---- 501 (1431)
T KOG1240|consen 490 LAL----VRDIPPS---------------------------------------------------------D---A---- 501 (1431)
T ss_pred Hhh----ccCCCcc---------------------------------------------------------c---c----
Confidence 111 1122110 0 0
Q ss_pred cCCCCccchhhHHhhhhHHHHHhhccCCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccc
Q 001018 742 GGHIEWPAFEWMHVDCFPGLIQLACLLPE-KEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTI 820 (1188)
Q Consensus 742 ~~~~~w~~~~wl~~~lLP~l~~LA~~~~D-~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~ 820 (1188)
..+.+.++|.|..|+ .| ...+||-+.|..|..||.+--. |....-.--+..++.|....
T Consensus 502 ---------niF~eYlfP~L~~l~---~d~~~~~vRiayAsnla~LA~tA~r-Fle~~q~~~~~g~~n~~nse------- 561 (1431)
T KOG1240|consen 502 ---------NIFPEYLFPHLNHLL---NDSSAQIVRIAYASNLAQLAKTAYR-FLELTQELRQAGMLNDPNSE------- 561 (1431)
T ss_pred ---------hhhHhhhhhhhHhhh---ccCccceehhhHHhhHHHHHHHHHH-HHHHHHHHHhcccccCcccc-------
Confidence 013345677777776 66 7889999999999999986421 11111000112233332210
Q ss_pred cccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHH
Q 001018 821 HSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHT 900 (1188)
Q Consensus 821 ~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~ 900 (1188)
+ .|.. .. ..++ .+++.
T Consensus 562 ----------t-------------------~~~~--~~--~~~~-------------------------------~~L~~ 577 (1431)
T KOG1240|consen 562 ----------T-------------------APEQ--NY--NTEL-------------------------------QALHH 577 (1431)
T ss_pred ----------c-------------------cccc--cc--chHH-------------------------------HHHHH
Confidence 0 0000 00 0011 22334
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHH
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKI 980 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl 980 (1188)
.+=..+..++.|+.|.||-+....+..|...||.+-...-|++.|.+..+|.||..|-+-.+.|.-++--+|...+.+-+
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyl 657 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYL 657 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHH
Confidence 45556677889999999999999999999999999999999999999999999999999999999999889988888889
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCc
Q 001018 981 RVQMDAFLEDGSHEATVAVVRALAVAVPHT--TERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELS 1058 (1188)
Q Consensus 981 ~~~~~slL~D~~~~vR~~vv~al~~l~p~~--~~~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~ 1058 (1188)
.|++++-|.|+-.-|-+.++.++..++..= .....-.|+-.+.-+.-+||. =-|+.+...+..+++.++..+..
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~----WIR~~~~~iI~~~~~~ls~advy 733 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNL----WIRRAVLGIIAAIARQLSAADVY 733 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchH----HHHHHHHHHHHHHHhhhhhhhhe
Confidence 999999999999999999999999887432 111111122222222237883 12888888888888877743321
Q ss_pred hhhhhhhHHHHHHHHHhccC--------CCChHHHHHHHHHHhhcc
Q 001018 1059 ATSVRDFLLPAIQNLLKDAD--------SLDPAHKEALEIIMKDRS 1096 (1188)
Q Consensus 1059 ~~~v~~~ilP~L~~L~~D~d--------~l~~~~k~~l~~i~ke~~ 1096 (1188)
. .+...|-|.|....-+.. ..+|=-|+....++|-+.
T Consensus 734 c-~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~r~~~ 778 (1431)
T KOG1240|consen 734 C-KLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLLRWSD 778 (1431)
T ss_pred E-EeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHHHHhh
Confidence 1 122234444443332232 345666777777765443
No 7
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=1.8e-08 Score=113.98 Aligned_cols=124 Identities=17% Similarity=0.082 Sum_probs=75.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHH
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSI 584 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~ 584 (1188)
..|+.++.|++..||..++..|+.+. . .+.++.+..+.+|+...||..++..+|.|..--.. ..-.++.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~----~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~ 94 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG----G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNI 94 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC----c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHH
Confidence 34556667888888888777776553 2 34455555566677777888888888776531100 1223566
Q ss_pred HHHh-hcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHH
Q 001018 585 VQQL-VEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFK 641 (1188)
Q Consensus 585 LqqL-~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~ 641 (1188)
|..+ .+|+++.||.+|+..|+.++..-... ...+.+.+..++.|++++||..++.
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~ 150 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAF 150 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHH
Confidence 6654 67788888888888777775432211 1134455555666666666665543
No 8
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.05 E-value=1.3e-08 Score=131.77 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=97.8
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHH
Q 001018 484 LPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQ 563 (1188)
Q Consensus 484 lPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAe 563 (1188)
-|.++++|..........+....|..+++|+++.||+.++.+|..++...... +.+...++|+.++||..+++
T Consensus 634 d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------~~L~~~L~~~d~~VR~~A~~ 706 (897)
T PRK13800 634 DPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------PALRDHLGSPDPVVRAAALD 706 (897)
T ss_pred CHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------HHHHHHhcCCCHHHHHHHHH
Confidence 45566666554433334556677778889999999999999998886544332 23444567788999999999
Q ss_pred HHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 564 SCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 564 scg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.|+.+.. + . ...|.++++|+++.||.+|++.|..+. .. +.+..++.|+++.||.+++..|
T Consensus 707 aL~~~~~--~-~------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~~-------~~l~~~l~D~~~~VR~~aa~aL 766 (897)
T PRK13800 707 VLRALRA--G-D------AALFAAALGDPDHRVRIEAVRALVSVD----DV-------ESVAGAATDENREVRIAVAKGL 766 (897)
T ss_pred HHHhhcc--C-C------HHHHHHHhcCCCHHHHHHHHHHHhccc----Cc-------HHHHHHhcCCCHHHHHHHHHHH
Confidence 9998752 1 1 124566889999999999999999852 21 3456789999999999887665
No 9
>PRK09687 putative lyase; Provisional
Probab=98.98 E-value=7.2e-08 Score=109.17 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=60.8
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHH
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDK 979 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ek 979 (1188)
..+.+.|..++.|+++.||..++..|..+. ...++|.|+...+|++ ||+.++.|++.+.. .+
T Consensus 191 ~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~ 252 (280)
T PRK09687 191 PDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD--------KT 252 (280)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------Hh
Confidence 346667777778888888888888887653 2367788888777776 56667777776543 24
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHH
Q 001018 980 IRVQMDAFLE-DGSHEATVAVVRALAV 1005 (1188)
Q Consensus 980 l~~~~~slL~-D~~~~vR~~vv~al~~ 1005 (1188)
..|.+..++. +++..++...+.++..
T Consensus 253 a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 253 LLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 5666666665 6677777777776654
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.95 E-value=7.8e-07 Score=108.16 Aligned_cols=444 Identities=15% Similarity=0.161 Sum_probs=261.1
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh
Q 001018 492 ERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF 571 (1188)
Q Consensus 492 ~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~ 571 (1188)
+.+.++..---..+.+.+-+++++|.+|-.|++.+..++ .......++|.+...+.|+.+.||-.++-++..+...
T Consensus 69 ~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 69 YLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp HTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 334444444445677888899999999999988887765 4444566888899999999999999999999998877
Q ss_pred hChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc--hhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHh
Q 001018 572 VRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT--DKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVIN 649 (1188)
Q Consensus 572 vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~--d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~ 649 (1188)
.+...... +++.+.++..|+.+.|+.+|+..+..+ ..-++. ....++...+..++.++++-+....++.+ ..+++
T Consensus 145 ~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l-~~~~~ 221 (526)
T PF01602_consen 145 DPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLL-RRYAP 221 (526)
T ss_dssp CHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHH-TTSTS
T ss_pred CHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHH-Hhccc
Confidence 44434444 799999999999999999999988888 111111 12233444444445677777666665544 33332
Q ss_pred cccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcc
Q 001018 650 WGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEE 729 (1188)
Q Consensus 650 ~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~e 729 (1188)
+......- ..++..+...++ ..+ ..
T Consensus 222 ~~~~~~~~-~~~i~~l~~~l~---------------------s~~---------------------------------~~ 246 (526)
T PF01602_consen 222 MEPEDADK-NRIIEPLLNLLQ---------------------SSS---------------------------------PS 246 (526)
T ss_dssp SSHHHHHH-HHHHHHHHHHHH---------------------HHH---------------------------------HH
T ss_pred CChhhhhH-HHHHHHHHHHhh---------------------ccc---------------------------------cH
Confidence 21111100 112222211000 000 11
Q ss_pred cccc-hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHh-
Q 001018 730 TVFP-SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAV- 807 (1188)
Q Consensus 730 vrl~-~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL- 807 (1188)
+++. ...+-.+.. -.-+...+++.+..+. .++.+.+|+.+.+.+..++.......+ ..-... ..+.
T Consensus 247 V~~e~~~~i~~l~~-------~~~~~~~~~~~L~~lL---~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~-~~l~~ 314 (526)
T PF01602_consen 247 VVYEAIRLIIKLSP-------SPELLQKAINPLIKLL---SSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLIL-FFLLY 314 (526)
T ss_dssp HHHHHHHHHHHHSS-------SHHHHHHHHHHHHHHH---TSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHH-HHHHC
T ss_pred HHHHHHHHHHHhhc-------chHHHHhhHHHHHHHh---hcccchhehhHHHHHHHhhcccchhhh-hhhhhh-heecC
Confidence 1111 000100000 0114566778888886 788999999999999999988744444 222233 3344
Q ss_pred CCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHH
Q 001018 808 GDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVN 887 (1188)
Q Consensus 808 ~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ 887 (1188)
.|+..+ |..+-..+.++ +..-....+++ ++..|+++... . +...+++.
T Consensus 315 ~~d~~I---r~~~l~lL~~l------~~~~n~~~Il~--------------eL~~~l~~~~d---~------~~~~~~i~ 362 (526)
T PF01602_consen 315 DDDPSI---RKKALDLLYKL------ANESNVKEILD--------------ELLKYLSELSD---P------DFRRELIK 362 (526)
T ss_dssp SSSHHH---HHHHHHHHHHH--------HHHHHHHHH--------------HHHHHHHHC-----H------HHHHHHHH
T ss_pred CCChhH---HHHHHHHHhhc------ccccchhhHHH--------------HHHHHHHhccc---h------hhhhhHHH
Confidence 333321 21111111000 00000000111 12223322200 0 01223455
Q ss_pred HHHhhh-chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccC-CCcchHHHHHHHHH
Q 001018 888 AVRFLC-TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSD-QNLNVKYASIDAFG 965 (1188)
Q Consensus 888 ai~~Lg-~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD-~d~dVR~aaieAl~ 965 (1188)
+|..++ .+....+.+++++++++......++..++..+..+..... .....++..|.++..+ .+..++.+++-.+|
T Consensus 363 ~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~~~~~~l~~L~~~l~~~~~~~~~~~~~wilG 440 (526)
T PF01602_consen 363 AIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--ELREKILKKLIELLEDISSPEALAAAIWILG 440 (526)
T ss_dssp HHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--TTHHHHHHHHHHHHTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--hhhHHHHHHHHHHHHHhhHHHHHHHHHhhhc
Confidence 655555 3555668899999999999989999999988888875532 2244566777766554 66778888888888
Q ss_pred HHHHhhch-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH-HHHHHHHHHHHhhc--CCCCChhhHHHHHH
Q 001018 966 AVAQHFKN-DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER-LRDYLLSKIFQLSA--VPSSSSDVMRRRER 1041 (1188)
Q Consensus 966 ~LA~~l~~-e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~-~r~~IlP~L~~L~~--vpN~~~~~~~R~~v 1041 (1188)
.-++.+.. + ....+...+..-..+....++..++.++.++....+.. ....++..+..+++ -.|. ++..|
T Consensus 441 Ey~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~--evr~R--- 514 (526)
T PF01602_consen 441 EYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDP--EVRDR--- 514 (526)
T ss_dssp HHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSH--HHHHH---
T ss_pred ccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCH--HHHHH---
Confidence 88877664 3 33344444444445566789999999999999887764 44488888888887 4454 44444
Q ss_pred HHHHHHHH
Q 001018 1042 ANAFCESI 1049 (1188)
Q Consensus 1042 Ak~l~~a~ 1049 (1188)
|.-+...+
T Consensus 515 a~~y~~ll 522 (526)
T PF01602_consen 515 AREYLRLL 522 (526)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.89 E-value=2.4e-06 Score=103.97 Aligned_cols=135 Identities=17% Similarity=0.098 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhh
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLI 581 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slL 581 (1188)
.+..-..+++..++...||.+-=.+..++..- ...--..+..+..-.+|+.+.+|-++...++.+. .++-...+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l 115 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPL 115 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHH
Confidence 45555566677788888877665555544311 1122334455555667788889988888877765 33344557
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 582 LSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 582 L~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.+.+.+++.|+.|.||.+|+-.+..+....++..... +.+.+..++.|..+.|+.+|+..+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHH
Confidence 9999999999999999999999999998876653333 789999999999999999987665
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.5e-05 Score=96.26 Aligned_cols=444 Identities=16% Similarity=0.130 Sum_probs=291.9
Q ss_pred chhHHHHHHhhhcccchhcchhhHHhHhhHHHHHhhcCC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 001018 457 GLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHP-DTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE 535 (1188)
Q Consensus 457 ~~~~v~lls~~lP~Ivp~V~~~~R~ellPli~~aa~~h~-~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ 535 (1188)
+.....++...|-+.. ..+.|+.-+-+.-..++.-. .+..-......|++...-|.+++|++...-+..+--....
T Consensus 53 v~~l~~~~~~~l~~~~---~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~ 129 (569)
T KOG1242|consen 53 VLNLKPCFEQRLNSLH---NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG 129 (569)
T ss_pred HHHHHHHHHHHhccch---hHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc
Confidence 5556677777776666 66677776666555544433 3334467889999999999999999988877776554432
Q ss_pred hhhHhhHHHHHHHH-hhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCC-cHHHHHHHHHHHHhhcccCCC
Q 001018 536 MRTEMELLPQCWEQ-INHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDS-ATVVREAAARNLALLLPLFPN 613 (1188)
Q Consensus 536 ert~~ELLP~l~el-i~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~-e~~VR~aAAksL~~l~~~l~~ 613 (1188)
......++-+.++ -..++.+++=..-+..|.+-.+.........++.-+.....|+ +...|+++.-.+...+..++.
T Consensus 130 -~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 130 -LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred -cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 2233333333332 2446666655444433333333333445566888888888887 567777676667777777764
Q ss_pred ch--hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhh
Q 001018 614 TD--KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGE 691 (1188)
Q Consensus 614 ~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~ 691 (1188)
.- -.-+++|..+.=..|....||.+|.... -++...++.- -+..+++.++. .+-+
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~-kai~~~~~~~--aVK~llpsll~--------------------~l~~ 265 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAA-KAIMRCLSAY--AVKLLLPSLLG--------------------SLLE 265 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHH-HHHHHhcCcc--hhhHhhhhhHH--------------------HHHH
Confidence 31 2336777777777899999999997665 4444443321 11222333221 1112
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCC
Q 001018 692 RERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEK 771 (1188)
Q Consensus 692 d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~ 771 (1188)
. .||.-. ..-+++-.+... ....++. +...++|.+.+.. .|.
T Consensus 266 ~-kWrtK~---aslellg~m~~~------------------ap~qLs~-------------~lp~iiP~lsevl---~DT 307 (569)
T KOG1242|consen 266 A-KWRTKM---ASLELLGAMADC------------------APKQLSL-------------CLPDLIPVLSEVL---WDT 307 (569)
T ss_pred H-hhhhHH---HHHHHHHHHHHh------------------chHHHHH-------------HHhHhhHHHHHHH---ccC
Confidence 2 688554 333333321111 1122332 4567899999986 999
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhc
Q 001018 772 EDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVL 851 (1188)
Q Consensus 772 sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL 851 (1188)
.--||.+..+.+.+++...--.- ...++|..+..+.|+... .|
T Consensus 308 ~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~-----------------------------~~------- 350 (569)
T KOG1242|consen 308 KPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCY-----------------------------TP------- 350 (569)
T ss_pred CHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccc-----------------------------hH-------
Confidence 99999999999999999875544 556678888888886411 11
Q ss_pred CCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 001018 852 GAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPY 931 (1188)
Q Consensus 852 ~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ 931 (1188)
.|++-+....-.+ . ..+.....++|+|-+.+.+.....+=.++....-++..
T Consensus 351 ----------e~~~~L~~ttFV~------~------------V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 351 ----------ECLDSLGATTFVA------E------------VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ----------HHHHhhcceeeee------e------------ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 1222222110000 0 12445578999999999999999998888888888877
Q ss_pred h-chhhhh---hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHh
Q 001018 932 I-NAKVTS---MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDG-SHEATVAVVRALAVA 1006 (1188)
Q Consensus 932 i-g~~~ls---~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~-~~~vR~~vv~al~~l 1006 (1188)
+ +..++. ..++|.|..-..|+...||..+..|++.+.+.+|...| +.+.|.++..+.+. .-.-|...++.++.+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~ev 481 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEV 481 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHH
Confidence 7 666654 67899999999999999999999999999999999888 55677766665443 445678888999999
Q ss_pred cccCCHHHHHHHHHHHHHhhcCCCC
Q 001018 1007 VPHTTERLRDYLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 1007 ~p~~~~~~r~~IlP~L~~L~~vpN~ 1031 (1188)
.+..+...+..++|-+..-+...++
T Consensus 482 l~~~~v~~~~~~~~~~~a~~~~~~~ 506 (569)
T KOG1242|consen 482 LAGLGVEKVEDILPEILANASSVLI 506 (569)
T ss_pred HhcccchHHHHHHHHHHHHHhhccc
Confidence 9988888888777776665543333
No 13
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.2e-06 Score=100.42 Aligned_cols=423 Identities=16% Similarity=0.143 Sum_probs=248.9
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH----HHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001018 497 TSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLA----KNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELA 569 (1188)
Q Consensus 497 ~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA----~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La 569 (1188)
-..|-+++.+|.+++..++-..---|+.++..|. +.+.. +|--+-++|-+.+...|.....|-.+.-+...+.
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 3455666777777776666555555666655553 33332 4666779999999999999999988776666655
Q ss_pred hhhChhhhhhh--hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHhhHH
Q 001018 570 EFVRPEIRDSL--ILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKELLP 645 (1188)
Q Consensus 570 ~~vg~e~r~sl--LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llp 645 (1188)
..-......++ .+..+-+|+.|+.+.||.-+.++|.-+.+.-++.. ....|+++++...+|....|.--|.+.. -
T Consensus 203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw-l 281 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW-L 281 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH-H
Confidence 44444444333 78888899999999999999999999998876643 3668999999999999999887665544 5
Q ss_pred HHHhcccchHHHHHHHHHHHhhhhccCCCc-cccch-hhhhhh--hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001018 646 AVINWGSKLDHILRVLLSYILSSAQRCPPL-SGVEG-SVESHL--RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPF 721 (1188)
Q Consensus 646 ala~~~~~~~~ll~~ll~~L~~~v~~lp~~-~~v~~-~la~~l--~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf 721 (1188)
+++.-. ...+.+.-.+++|++.+- -.|+ +...- .+.+.- ..+++++ +++=|.++..=.....
T Consensus 282 a~aeqp-i~~~~L~p~l~kliPvLl-~~M~Ysd~D~~LL~~~eeD~~vpDre-----------eDIkPRfhksk~~~~~- 347 (885)
T KOG2023|consen 282 ALAEQP-ICKEVLQPYLDKLIPVLL-SGMVYSDDDIILLKNNEEDESVPDRE-----------EDIKPRFHKSKEHGNG- 347 (885)
T ss_pred HHhcCc-CcHHHHHHHHHHHHHHHH-ccCccccccHHHhcCccccccCCchh-----------hhccchhhhchhccCc-
Confidence 666532 223333233333332210 0011 00000 000000 0000000 1111222221000000
Q ss_pred CCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 001018 722 SSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLP 801 (1188)
Q Consensus 722 ~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP 801 (1188)
.+++ .+...=.+.+ -+ -.+..|++|..-|..+.-||..||.+... +++|
T Consensus 348 --~~~~--------------~eDdddDe~D--Dd------------D~~~dWNLRkCSAAaLDVLanvf~~elL~-~l~P 396 (885)
T KOG2023|consen 348 --EDAD--------------DEDDDDDEDD--DD------------DAFSDWNLRKCSAAALDVLANVFGDELLP-ILLP 396 (885)
T ss_pred --cccc--------------cccccccccc--cc------------cccccccHhhccHHHHHHHHHhhHHHHHH-HHHH
Confidence 0000 0000000000 00 13457999999999999999999977543 3345
Q ss_pred HHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccch
Q 001018 802 VFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKC 881 (1188)
Q Consensus 802 ~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~ 881 (1188)
.....|.-. + |.+.-
T Consensus 397 lLk~~L~~~-------------------------~----------------------------------------W~vrE 411 (885)
T KOG2023|consen 397 LLKEHLSSE-------------------------E----------------------------------------WKVRE 411 (885)
T ss_pred HHHHHcCcc-------------------------h----------------------------------------hhhhh
Confidence 444433221 1 11100
Q ss_pred hhh-HHHHHHhhhc--hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhc---cCCCcc
Q 001018 882 NAE-IVNAVRFLCT--FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLG---SDQNLN 955 (1188)
Q Consensus 882 ~p~-ll~ai~~Lg~--~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~La---sD~d~d 955 (1188)
+.- .+-||..=|. +-.+...++|.+..++.|..|-||--..=+|.+-++.+-.+--.+..+|.|..|. =|.+-+
T Consensus 412 agvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~ 491 (885)
T KOG2023|consen 412 AGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKK 491 (885)
T ss_pred hhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHH
Confidence 000 0112222221 2334457999999999999999999999999999998877767788888887765 499999
Q ss_pred hHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHhc---CCChhHHHHHHHHHHHhc-ccC-CHHHHH-HHHHHHHHhhc
Q 001018 956 VKYASIDAFGAVAQHFKNDM--IVDKIRVQMDAFLE---DGSHEATVAVVRALAVAV-PHT-TERLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 956 VR~aaieAl~~LA~~l~~e~--~~ekl~~~~~slL~---D~~~~vR~~vv~al~~l~-p~~-~~~~r~-~IlP~L~~L~~ 1027 (1188)
|..|+..|+..+-+..|.+- +.+.|..+++--.+ -+|-.|-.-++.+|+--+ .++ .+.+++ -+=|.+.+...
T Consensus 492 VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 492 VQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh
Confidence 99999999999999888753 34555555544322 244455556666666533 333 446666 44445544444
Q ss_pred CCC
Q 001018 1028 VPS 1030 (1188)
Q Consensus 1028 vpN 1030 (1188)
.++
T Consensus 572 lsd 574 (885)
T KOG2023|consen 572 LSD 574 (885)
T ss_pred cCc
Confidence 333
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.78 E-value=3e-05 Score=93.95 Aligned_cols=218 Identities=15% Similarity=0.203 Sum_probs=142.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-----HHHhCCccccccCCccccccccCCCcchhHhhhhhhhch
Q 001018 768 LPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVF-----MVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGV 842 (1188)
Q Consensus 768 ~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~f-----l~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~l 842 (1188)
..|.+.--|.+.++.+.++-..+|..-+.+.+...+ ..+-.++..+++ .+.++ ..+...+.+.+.
T Consensus 725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~v-------ml~gf---g~V~~~lg~r~k 794 (1172)
T KOG0213|consen 725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSV-------MLLGF---GTVVNALGGRVK 794 (1172)
T ss_pred hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhh-------hhhhH---HHHHHHHhhccc
Confidence 478888899999999999999999877666544332 233333322211 11111 222333333222
Q ss_pred --hhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHH-Hhh--hchhhHHHhHHHHHHHhhcCCChhH
Q 001018 843 --LPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAV-RFL--CTFEEHHTMVFNILWEMVVSSNIDM 917 (1188)
Q Consensus 843 --LP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai-~~L--g~~e~~~~~iLpiL~~lv~D~~pnV 917 (1188)
+|.+... .|.+|-.-.+.- ..++.-++..+ ..+ |..++...+|--+|.+-+..+.|.|
T Consensus 795 pylpqi~st-------------iL~rLnnksa~v----Rqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEv 857 (1172)
T KOG0213|consen 795 PYLPQICST-------------ILWRLNNKSAKV----RQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEV 857 (1172)
T ss_pred cchHHHHHH-------------HHHHhcCCChhH----HHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHH
Confidence 4444332 223332211100 01222222222 222 4567888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhhh---hhhhhHHHhhccCCCcchHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHhcC
Q 001018 918 KINAANLLKVIVPYINAKVTS---MQVLPALVTLGSDQNLNVKYASIDAFGAVAQH----FKNDMIVDKIRVQMDAFLED 990 (1188)
Q Consensus 918 R~naak~L~~L~~~ig~~~ls---~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~----l~~e~~~ekl~~~~~slL~D 990 (1188)
==.+...++.|..++|-.-.. ..++|.|.-.....+--|...+|.-++.+|.. .+..+-. +|+--+..+|.-
T Consensus 858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-RIcfeLlelLka 936 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-RICFELLELLKA 936 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHH
Confidence 999999999999999876543 57899999999999999999999999999964 3444432 233333344544
Q ss_pred CChhHHHHHHHHHHHhcccCCHH
Q 001018 991 GSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 991 ~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
.+-.+|-+++.+|+-|+..++|.
T Consensus 937 hkK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 937 HKKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred HHHHHHHHHHhhhhHHHHhcCHH
Confidence 55699999999999999999986
No 15
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.73 E-value=2.4e-05 Score=93.24 Aligned_cols=457 Identities=16% Similarity=0.195 Sum_probs=258.6
Q ss_pred hHHHHHHhhhcccchhcchh-hHHhHhhHHHHHhhc---------------------CCChhhHHHHHHHHHHhhc----
Q 001018 459 GTIQILADALPKIVPYVLIN-HREELLPLIMCAIER---------------------HPDTSTRDSLTHTLFNLIK---- 512 (1188)
Q Consensus 459 ~~v~lls~~lP~Ivp~V~~~-~R~ellPli~~aa~~---------------------h~~~~~R~~Ll~ll~nLiK---- 512 (1188)
++-.+|-..||-....-+.. .|.-++.+|.+.-|. -++...|..=+.+..||.+
T Consensus 200 g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl 279 (975)
T COG5181 200 GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGL 279 (975)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhcc
Confidence 34456777777766665554 466667787766655 1244555555556666644
Q ss_pred ------------CCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhc-CchhHHHHHHHHHHHHHhhhChhhhhh
Q 001018 513 ------------RPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINH-MYEERRLLVAQSCGELAEFVRPEIRDS 579 (1188)
Q Consensus 513 ------------dddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~D-d~dEVRlLvAescg~La~~vg~e~r~s 579 (1188)
+.|+-||-...++.+.+|+++|- .+|+||+..+... ++|+-|--.+-....++.++|...-.+
T Consensus 280 ~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~h 355 (975)
T COG5181 280 GFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSH 355 (975)
T ss_pred ceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhh
Confidence 47899999999999999999995 6899998887655 499999888887788888887664444
Q ss_pred h--hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHh---h----HHHHH
Q 001018 580 L--ILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKE---L----LPAVI 648 (1188)
Q Consensus 580 l--LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~---L----lpala 648 (1188)
+ ++..+..+.+|++--||-.+|.+|.-+++..++-- .++.++..+..-++..-+.+-.+-.+. + .|-|+
T Consensus 356 l~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa 435 (975)
T COG5181 356 LGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYA 435 (975)
T ss_pred hhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhh
Confidence 3 88888999999999999999999999999887743 233333333222221111111111110 0 12222
Q ss_pred hcccchHHHHHHHHHHHhhhhccCCCccccc--hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 001018 649 NWGSKLDHILRVLLSYILSSAQRCPPLSGVE--GSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSL 726 (1188)
Q Consensus 649 ~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~--~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~q 726 (1188)
... .......++..+ +.|...... -.+...+...+.+.-|.. ..++.|.+|...-..- .+.|.
T Consensus 436 ~h~--tre~m~iv~ref-----~spdeemkk~~l~v~~~C~~v~~~tp~~l------r~~v~pefF~~fw~rr--~A~dr 500 (975)
T COG5181 436 CHD--TREHMEIVFREF-----KSPDEEMKKDLLVVERICDKVGTDTPWKL------RDQVSPEFFSPFWRRR--SAGDR 500 (975)
T ss_pred hhh--HHHHHHHHHHHh-----CCchhhcchhHHHHHHHHhccCCCCHHHH------HHhhcHHhhchHHHhh--hcccc
Confidence 211 011111222221 222211111 112222234455666774 4577887777432110 00000
Q ss_pred --CcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 001018 727 --SEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFM 804 (1188)
Q Consensus 727 --d~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl 804 (1188)
-.+|.++..++..- . |-...+..++ + -..|...-.|.+-+....++-..+|..-+.+.+...++
T Consensus 501 ~~~k~v~~ttvilAk~--~-----g~~~v~~kil----~---~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~ 566 (975)
T COG5181 501 RSYKQVVLTTVILAKM--G-----GDPRVSRKIL----E---YYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY 566 (975)
T ss_pred cccceeehhHHHHHHH--c-----CChHHHHHHH----h---hccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH
Confidence 01222222222210 0 1111222222 2 24788888999999999988888887777666544333
Q ss_pred HH-----hCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhccccccccc
Q 001018 805 VA-----VGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTV 879 (1188)
Q Consensus 805 ~l-----L~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v 879 (1188)
.- -.++..+.+ |||+++.
T Consensus 567 d~il~Afqeq~~t~~~----------------------------------il~~f~t----------------------- 589 (975)
T COG5181 567 DSILNAFQEQDTTVGL----------------------------------ILPCFST----------------------- 589 (975)
T ss_pred HHHHHHHHhccccccE----------------------------------EEecccc-----------------------
Confidence 22 222211100 2222100
Q ss_pred chhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc--------------------------
Q 001018 880 KCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN-------------------------- 933 (1188)
Q Consensus 880 ~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig-------------------------- 933 (1188)
++.++.+.| ..+...|+..++.+++++.|+||..++.+...|++++.
T Consensus 590 -----v~vsl~~r~--kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEv 662 (975)
T COG5181 590 -----VLVSLEFRG--KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEV 662 (975)
T ss_pred -----eeeehhhcc--CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHH
Confidence 011222222 22334455555566666666666666665555555442
Q ss_pred ----------------hhhh---hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHhcC
Q 001018 934 ----------------AKVT---SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH----FKNDMIVDKIRVQMDAFLED 990 (1188)
Q Consensus 934 ----------------~~~l---s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~----l~~e~~~ekl~~~~~slL~D 990 (1188)
-+.+ -..|+|.|.-.....+--|-...|.-++.++.. .|+.+-.- |+--+...|.-
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks 741 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKS 741 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHH
Confidence 2211 246788888888888888989999988888864 45554322 22222333444
Q ss_pred CChhHHHHHHHHHHHhcccCCHH
Q 001018 991 GSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 991 ~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
.+-.+|-++..+|+-|...++|.
T Consensus 742 ~nKeiRR~A~~tfG~Is~aiGPq 764 (975)
T COG5181 742 WNKEIRRNATETFGCISRAIGPQ 764 (975)
T ss_pred hhHHHHHhhhhhhhhHHhhcCHH
Confidence 45599999999999999999886
No 16
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00031 Score=86.26 Aligned_cols=455 Identities=15% Similarity=0.162 Sum_probs=278.3
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-------hCc----hhh----------HhhHHHHHHHHh-----
Q 001018 497 TSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKN-------VGE----MRT----------EMELLPQCWEQI----- 550 (1188)
Q Consensus 497 ~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~-------lg~----ert----------~~ELLP~l~eli----- 550 (1188)
..--..|.++...-.|.+++.|-..+++-|.+|..- .|+ .+. -..++|.+.++.
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 334445666666667788888888888888866531 111 111 125777776533
Q ss_pred --hcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc---hhhhhHHHHHH
Q 001018 551 --NHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT---DKYFKVEDLMF 625 (1188)
Q Consensus 551 --~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~---d~~~qi~~~f~ 625 (1188)
+||.|..-..+.-+++.+++.+|.++-. +++|.+++-.+.+.|+=|++++=.|+-+...-+.. -+..+..|...
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 2367889888888889999999988876 56999999999999999999999998887664432 14567889999
Q ss_pred HhccCCChhHHHHHHHhhHHHHHhcccch---HHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHH
Q 001018 626 QLVCDPSGVVVETTFKELLPAVINWGSKL---DHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLR 702 (1188)
Q Consensus 626 ~Ll~D~s~~Vr~aa~~~Llpala~~~~~~---~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~ 702 (1188)
.++.|++=.|+++++-.| -.++..+... ...+..+++-++.-+.++|.+ .....|+.-
T Consensus 413 ~lm~D~sl~VkdTaAwtl-grI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrv--------------a~N~CWAf~---- 473 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTL-GRIADFLPEAIINQELLQSKLSALLEGLNDEPRV--------------ASNVCWAFI---- 473 (859)
T ss_pred HHhcCchhhhcchHHHHH-HHHHhhchhhcccHhhhhHHHHHHHHHhhhCchH--------------HHHHHHHHH----
Confidence 999999999998887666 4444333211 122233344444444445432 233344422
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHH
Q 001018 703 MMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKF 782 (1188)
Q Consensus 703 ~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~ 782 (1188)
.|.-..+..+.. ....++.. + .-..++..+++.+.+.+-.+-+.|.++-+.
T Consensus 474 ---~Laea~~eA~~s-----~~qt~~~t-------~--------------~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 474 ---SLAEAAYEAAVS-----NGQTDPAT-------P--------------FYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred ---HHHHHHHHhccC-----CCCCCccc-------h--------------hHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 221111221110 00000000 1 123345555566554443566899999999
Q ss_pred HHHHHHhhCHHHHHHH--HHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhh
Q 001018 783 LLAVSKQFGDSYLTHI--MLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQL 860 (1188)
Q Consensus 783 l~~La~~fG~e~t~~~--LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l 860 (1188)
++.+-+.--++..... +.+..+.-|... + -..+++.. ++..
T Consensus 525 LmElIk~st~~vy~~v~~~~l~il~kl~q~----------------------i-------------~~~~l~~~-dr~q- 567 (859)
T KOG1241|consen 525 LMELIKNSTDDVYPMVQKLTLVILEKLDQT----------------------I-------------SSQILSLA-DRAQ- 567 (859)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHH----------------------H-------------HHHhccHh-hHHH-
Confidence 9999988766655442 222222222110 0 01122221 2211
Q ss_pred hHHHHHHHhhcccccccccchhhhHHHHHHhhh-chhhHHHhHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhchhhh-
Q 001018 861 ADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC-TFEEHHTMVFNILWEMVVS-SNIDMKINAANLLKVIVPYINAKVT- 937 (1188)
Q Consensus 861 ~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg-~~e~~~~~iLpiL~~lv~D-~~pnVR~naak~L~~L~~~ig~~~l- 937 (1188)
.+-|+.+.+. + |...++.++ ......+++|..|+.+... .+.-|-..+.-....++..+|....
T Consensus 568 ~~eLQs~Lc~---~----------Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~k 634 (859)
T KOG1241|consen 568 LNELQSLLCN---T----------LQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAK 634 (859)
T ss_pred HHHHHHHHHH---H----------HHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHH
Confidence 2334444431 0 122224444 3466778899999998876 3333444455555556666666533
Q ss_pred -hhhhhhHHHh-hccCCCcchHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhcccCC
Q 001018 938 -SMQVLPALVT-LGSDQNLNVKYASIDAFGAVAQHFKNDM--IVDKIRVQMDAFLEDG--SHEATVAVVRALAVAVPHTT 1011 (1188)
Q Consensus 938 -s~~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l~~e~--~~ekl~~~~~slL~D~--~~~vR~~vv~al~~l~p~~~ 1011 (1188)
...++|-|.. |.+-.++-|=.+++--.|-|+..++.++ +.+.+...+..-|..+ +.++.-.++.+|+-|+-..+
T Consensus 635 ym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg 714 (859)
T KOG1241|consen 635 YMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG 714 (859)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH
Confidence 4677887775 7788899999999999999999998875 4576777766667666 46889999999999999999
Q ss_pred HHHHH---HHHHHHHHhhc--CCC-CChhhHHHHHHHHHHHHHHH
Q 001018 1012 ERLRD---YLLSKIFQLSA--VPS-SSSDVMRRRERANAFCESIR 1050 (1188)
Q Consensus 1012 ~~~r~---~IlP~L~~L~~--vpN-~~~~~~~R~~vAk~l~~a~~ 1050 (1188)
.+|.. .|+|.+...++ .++ =.....|=-++=+..+++|.
T Consensus 715 ~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~ 759 (859)
T KOG1241|consen 715 ADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYT 759 (859)
T ss_pred HhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 98876 58888888775 222 12334443344444455554
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.5e-05 Score=95.88 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhh--hhHHHHHHhhcCCcHH
Q 001018 518 QRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDS--LILSIVQQLVEDSATV 595 (1188)
Q Consensus 518 vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~s--lLL~~LqqL~eD~e~~ 595 (1188)
.|.=.+.++..+|...|. +.-.-++|++.+...++.|-||-..+=++|++|+=.-.....+ .|.|.|.++..|+.+.
T Consensus 371 LRkCSAAaLDVLanvf~~-elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkpl 449 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGD-ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPL 449 (885)
T ss_pred HhhccHHHHHHHHHhhHH-HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccc
Confidence 689899999999988865 4456789999998899999999999999999996543333334 4999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCchhhhh---HHHHHHHhccCCChhHHHHHHHhh
Q 001018 596 VREAAARNLALLLPLFPNTDKYFK---VEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 596 VR~aAAksL~~l~~~l~~~d~~~q---i~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
||....=.|..++..+-.+.-+.. +..-++.-+-|..-.|-+||...+
T Consensus 450 VRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAf 500 (885)
T KOG2023|consen 450 VRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAF 500 (885)
T ss_pred eeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999988888888777644433233 444444455599999999997665
No 18
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.3e-05 Score=103.31 Aligned_cols=462 Identities=16% Similarity=0.174 Sum_probs=247.3
Q ss_pred CCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhh----HhhHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001018 494 HPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRT----EMELLPQCWEQINHMYEERRLLVAQSCGELA 569 (1188)
Q Consensus 494 h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert----~~ELLP~l~eli~Dd~dEVRlLvAescg~La 569 (1188)
|.++..-+.+...|+.+|-++.|..|.++.=-+-.+.+.+|..+- ..||.--|.++..|+.+-+-=.++..+|-.=
T Consensus 810 ~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVY 889 (1702)
T KOG0915|consen 810 KVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVY 889 (1702)
T ss_pred ccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEE
Confidence 445556677899999999999999999999888899999995433 3456655666777555544444555555433
Q ss_pred hhhChhhhhhhhHHHHHHhhcCC--------cHHHHH-------------HHHHHHHhhcccCCCchhhhhHHHHHHHhc
Q 001018 570 EFVRPEIRDSLILSIVQQLVEDS--------ATVVRE-------------AAARNLALLLPLFPNTDKYFKVEDLMFQLV 628 (1188)
Q Consensus 570 ~~vg~e~r~slLL~~LqqL~eD~--------e~~VR~-------------aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll 628 (1188)
+.=++....+++=+.+.+|.+-+ +++|=. .--+-|+.++..++++ .++-=|++|.
T Consensus 890 elgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP----dLVYKFM~LA 965 (1702)
T KOG0915|consen 890 ELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP----DLVYKFMQLA 965 (1702)
T ss_pred ecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh----HHHHHHHHHh
Confidence 44445677777777778888722 111110 0011122222222222 1222233333
Q ss_pred cCC-ChhHHHHHHHhhHHHHHhc-ccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 001018 629 CDP-SGVVVETTFKELLPAVINW-GSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAE 706 (1188)
Q Consensus 629 ~D~-s~~Vr~aa~~~Llpala~~-~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~ 706 (1188)
+.. ++.=|.-|+--| -++++- ....+..+++++|+|... +.-++.+|+.+..+ +|..
T Consensus 966 nh~A~wnSk~GaAfGf-~~i~~~a~~kl~p~l~kLIPrLyRY--~yDP~~~Vq~aM~s------------------IW~~ 1024 (1702)
T KOG0915|consen 966 NHNATWNSKKGAAFGF-GAIAKQAGEKLEPYLKKLIPRLYRY--QYDPDKKVQDAMTS------------------IWNA 1024 (1702)
T ss_pred hhhchhhcccchhhch-HHHHHHHHHhhhhHHHHhhHHHhhh--ccCCcHHHHHHHHH------------------HHHH
Confidence 322 222222222222 122211 111112222333332211 11111222222111 1111
Q ss_pred HHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHH
Q 001018 707 LLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAV 786 (1188)
Q Consensus 707 LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~L 786 (1188)
|+| |+ ....+.| .++++ .+|.+-+.++.||||.|-+-.+..|
T Consensus 1025 Li~-----------------D~-----k~~vd~y-------------~neIl---~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 1025 LIT-----------------DS-----KKVVDEY-------------LNEIL---DELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred hcc-----------------Ch-----HHHHHHH-------------HHHHH---HHHHHhccchhHHHHHHHHHHHHHH
Confidence 111 10 0111111 12222 2222334899999999999999998
Q ss_pred HHhhCHHHHHHHHHHHHHHHh--CCccccccCCccccccc---cCCCcc------hhHhhhhhhhchhhHHh-hhhcCCC
Q 001018 787 SKQFGDSYLTHIMLPVFMVAV--GDNANLTFFPSTIHSGI---RGLKPR------TAVGERLATMGVLPLLL-AGVLGAP 854 (1188)
Q Consensus 787 a~~fG~e~t~~~LlP~fl~lL--~D~~~~~i~R~a~~~~I---~~L~~r------taig~~l~~~~lLP~il-~gVL~~~ 854 (1188)
-..=..+-..+++..+...++ .|+.-+++ |.|++... .+|-+| .+-|.+ ....+||.++ .|++.
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsV-R~aa~~~~~~lsKl~vr~~d~~~~~~~~~-~l~~iLPfLl~~gims-- 1142 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESV-REAADKAARALSKLCVRICDVTNGAKGKE-ALDIILPFLLDEGIMS-- 1142 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCcccHHH-HHHHHHHHHhccCccc--
Confidence 876666666667655544443 56532333 76655432 222221 111222 2223466333 34443
Q ss_pred CcchhhhHHHHHHHhhcccc-cccccchhhhHHHHHHhhh-chhhHHHhHHHHHHHhhc----CCChhHHHHHHHH----
Q 001018 855 SKHDQLADYLRKLLVEGTMK-ENHTVKCNAEIVNAVRFLC-TFEEHHTMVFNILWEMVV----SSNIDMKINAANL---- 924 (1188)
Q Consensus 855 ~~~~~l~nyL~rLt~~~s~~-~~W~v~~~p~ll~ai~~Lg-~~e~~~~~iLpiL~~lv~----D~~pnVR~naak~---- 924 (1188)
+-.+..+|-...+.++..+ |+-...|+|.|+-++ . ....+-..+|..+.--+. .-.-+-|.+++++
T Consensus 1143 -~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~l---l~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmm 1218 (1702)
T KOG0915|consen 1143 -KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLL---LNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMM 1218 (1702)
T ss_pred -chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHH---HHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHH
Confidence 2233334433344444433 222223554443332 1 112222333333322221 1123568887764
Q ss_pred --HHHHHhhhchhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHhcCCChhHHHHH
Q 001018 925 --LKVIVPYINAKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQHFKNDM--IVDKIRVQMDAFLEDGSHEATVAV 999 (1188)
Q Consensus 925 --L~~L~~~ig~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~~l~~e~--~~ekl~~~~~slL~D~~~~vR~~v 999 (1188)
+....+++|...+ ..+.|.+.+|.. --...-|..+..-+..|+..+|.|+ +..|+...|-.-++|.+.++|..+
T Consensus 1219 eTi~~ci~~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1219 ETINKCINYIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred HHHHHHHHhhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHH
Confidence 5556777887777 578999998765 4467778899999999999999985 789999999999999999999999
Q ss_pred HHHHHHhcccCCHHHHH-HHHHHHHHhhc
Q 001018 1000 VRALAVAVPHTTERLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 1000 v~al~~l~p~~~~~~r~-~IlP~L~~L~~ 1027 (1188)
..|++.++....++--. .|-..+..+..
T Consensus 1298 AsAmG~L~k~Ss~dq~qKLie~~l~~~l~ 1326 (1702)
T KOG0915|consen 1298 ASAMGYLAKFSSPDQMQKLIETLLADLLG 1326 (1702)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhc
Confidence 99999999999885444 55555555443
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=98.65 E-value=0.00073 Score=85.91 Aligned_cols=468 Identities=17% Similarity=0.143 Sum_probs=240.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
+..-...++..++..+|+++--.+..+|+.- |+ .--..+..+..=.+|..+-+|-++.-.++.+- ...-...++
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pe-lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~ 142 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PE-KALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTL 142 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHH
Confidence 4434445667788888888877777775522 11 11234556666566778888888777666542 223334567
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHH
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLL 662 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll 662 (1188)
+++.+.+.|+++-||.+||-++.++-...++......+.+.+..|+.|..+.|...|+..| -.+..-..+.-.+....+
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL-~eI~~~~~~~l~l~~~~~ 221 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIV-CEVNDYGSEKIESSNEWV 221 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHH-HHHHHhCchhhHHHHHHH
Confidence 7788888899999999999888888766554322234566677788899999988887766 233221111001222233
Q ss_pred HHHhhhhccCCCcccc--chhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhhhh
Q 001018 663 SYILSSAQRCPPLSGV--EGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLLEL 739 (1188)
Q Consensus 663 ~~L~~~v~~lp~~~~v--~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll~l 739 (1188)
.+|+..+.++.....+ -..+.. .-+.+. .... .++..+.|. +. . ..+.|.++ +..+-.
T Consensus 222 ~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~-~e~~---~il~~l~~~----Lq-------~-~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 222 NRLVYHLPECNEWGQLYILELLAA---QRPSDK-ESAE---TLLTRVLPR----MS-------H-QNPAVVMGAIKVVAN 282 (746)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHh---cCCCCc-HHHH---HHHHHHHHH----hc-------C-CCHHHHHHHHHHHHH
Confidence 4444333333221100 000100 000111 0111 133333332 11 1 12344443 221111
Q ss_pred hhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCcc
Q 001018 740 YAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPST 819 (1188)
Q Consensus 740 ~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a 819 (1188)
+....+ -.-+.-+...+-+.++.|. .+.-.+|+.+-+++..++... +..+..+ ...|.-...|+.++ |.
T Consensus 283 l~~~~~-~~~~~~~~~rl~~pLv~L~----ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~Ff~~~~Dp~yI---K~- 351 (746)
T PTZ00429 283 LASRCS-QELIERCTVRVNTALLTLS----RRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSFYVRYSDPPFV---KL- 351 (746)
T ss_pred hcCcCC-HHHHHHHHHHHHHHHHHhh----CCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhhhcccCCcHHH---HH-
Confidence 100000 0001111222335555663 233469999999999998876 5555555 57777788886532 11
Q ss_pred ccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh-chhhH
Q 001018 820 IHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC-TFEEH 898 (1188)
Q Consensus 820 ~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg-~~e~~ 898 (1188)
.+|. +-..+++..=+..++ .++..|..+.-. +...+.+.+|..++ +.+..
T Consensus 352 -----~KLe----IL~~Lane~Nv~~IL----------~EL~eYa~d~D~----------ef~r~aIrAIg~lA~k~~~~ 402 (746)
T PTZ00429 352 -----EKLR----LLLKLVTPSVAPEIL----------KELAEYASGVDM----------VFVVEVVRAIASLAIKVDSV 402 (746)
T ss_pred -----HHHH----HHHHHcCcccHHHHH----------HHHHHHhhcCCH----------HHHHHHHHHHHHHHHhChHH
Confidence 1110 000000000001110 112223322111 12333466665555 56888
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh-h--ccCCCcchHHHHHHHHHHHHHhhchHH
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT-L--GSDQNLNVKYASIDAFGAVAQHFKNDM 975 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~-L--asD~d~dVR~aaieAl~~LA~~l~~e~ 975 (1188)
.+.|+.+|++++.+...-+- .++..++.|....... .+++.|.+ + -.=.+...|.+++=.||..+.....
T Consensus 403 a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-- 475 (746)
T PTZ00429 403 APDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-- 475 (746)
T ss_pred HHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--
Confidence 99999999999987554333 3445555554433322 34555543 1 1124567888888888877664422
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHHHHHH
Q 001018 976 IVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA-VPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus 976 ~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~-vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
.-+-+...+..|.. ....+|.+++-+..++.=..+++....+...|..+++ ..|+ |+. ++|-.|...+
T Consensus 476 a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~--DVR---DRA~~Y~rLL 544 (746)
T PTZ00429 476 GKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDP--DVR---DRAFAYWRLL 544 (746)
T ss_pred HHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCh--hHH---HHHHHHHHHH
Confidence 12333344455655 4568999999999998877766554344444445544 4554 443 4454444433
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=98.63 E-value=0.00025 Score=90.01 Aligned_cols=417 Identities=12% Similarity=0.096 Sum_probs=239.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcC
Q 001018 512 KRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVED 591 (1188)
Q Consensus 512 Kdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD 591 (1188)
+..++..|+.+++++... -.+|. .-+.+.|.+-..+..+.-++|-++---+..+++. .++..-+..+.|++-+.|
T Consensus 42 ~s~~~~~kk~alKkvIa~-mt~G~--DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaINtl~KDl~d 116 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIAN-MTMGR--DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAVNTFLQDTTN 116 (746)
T ss_pred HCCCHHHHHHHHHHHHHH-HHCCC--CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHHHHHHHHcCC
Confidence 566788899999887764 34674 4466888887766666666666665444444432 223345678899999999
Q ss_pred CcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhcc
Q 001018 592 SATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQR 671 (1188)
Q Consensus 592 ~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~ 671 (1188)
..+.||..|.+.++.|.. ......+.+.+...+.|.++.||.+|+-.+.-.|. . .+.++
T Consensus 117 ~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~-~-----------~pelv----- 175 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH-D-----------DMQLF----- 175 (746)
T ss_pred CCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-h-----------Ccccc-----
Confidence 999999999999887543 44566788888999999999999999544411111 0 00000
Q ss_pred CCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchh
Q 001018 672 CPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFE 751 (1188)
Q Consensus 672 lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~ 751 (1188)
.+. .+++.+..++. |.++.|..+
T Consensus 176 -------------------~~~------------~~~~~L~~LL~--------D~dp~Vv~n------------------ 198 (746)
T PTZ00429 176 -------------------YQQ------------DFKKDLVELLN--------DNNPVVASN------------------ 198 (746)
T ss_pred -------------------ccc------------chHHHHHHHhc--------CCCccHHHH------------------
Confidence 000 11122222111 233333332
Q ss_pred hHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHhCCccccccCCccccccccCCCc
Q 001018 752 WMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFG--DSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKP 829 (1188)
Q Consensus 752 wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG--~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~ 829 (1188)
.+-.+.++....++ .| ...-.++.+|+..++ .+|.+-.++..+...-
T Consensus 199 -----Al~aL~eI~~~~~~-~l---~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---------------------- 247 (746)
T PTZ00429 199 -----AAAIVCEVNDYGSE-KI---ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---------------------- 247 (746)
T ss_pred -----HHHHHHHHHHhCch-hh---HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC----------------------
Confidence 11111111100011 11 112333444555443 3666666555543221
Q ss_pred chhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh---c--hhhHHHhHH-
Q 001018 830 RTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC---T--FEEHHTMVF- 903 (1188)
Q Consensus 830 rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg---~--~e~~~~~iL- 903 (1188)
+.+..+....+.++...+. +.| .+.++.+++.+. . ....+..++
T Consensus 248 ------------------------P~~~~e~~~il~~l~~~Lq-~~N-----~AVVl~Aik~il~l~~~~~~~~~~~~~~ 297 (746)
T PTZ00429 248 ------------------------PSDKESAETLLTRVLPRMS-HQN-----PAVVMGAIKVVANLASRCSQELIERCTV 297 (746)
T ss_pred ------------------------CCCcHHHHHHHHHHHHHhc-CCC-----HHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 1112222334555544322 111 122455555443 1 134444443
Q ss_pred ---HHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHH
Q 001018 904 ---NILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKI 980 (1188)
Q Consensus 904 ---piL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl 980 (1188)
+.+..+ ....|+||+.+.+++..|.... +..+..+ +-..--+.+||++ ||...++.+-.++..-+.+.+++
T Consensus 298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv~~IL~-- 371 (746)
T PTZ00429 298 RVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVAPEILK-- 371 (746)
T ss_pred HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCcccHHHHHH--
Confidence 455566 4678999999999998888754 5566555 4444456789997 89999999988887666655544
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHHHHHHHhhccccCch
Q 001018 981 RVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAV-PSSSSDVMRRRERANAFCESIRALDATELSA 1059 (1188)
Q Consensus 981 ~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~v-pN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~ 1059 (1188)
-+..++.|.+..++..+++++++++-.. +...+.++..|..+... .++ --+...++..+++.-.
T Consensus 372 --EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~------v~e~i~vik~IlrkyP------ 436 (746)
T PTZ00429 372 --ELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPEL------LPQVVTAAKDIVRKYP------ 436 (746)
T ss_pred --HHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchh------HHHHHHHHHHHHHHCc------
Confidence 4456777889999999999999998655 34455677777777653 122 1122223333332211
Q ss_pred hhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHhhcc
Q 001018 1060 TSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRS 1096 (1188)
Q Consensus 1060 ~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~ke~~ 1096 (1188)
+ .++++.|..-..-.+..+|.-|..+--|+.||.
T Consensus 437 ~---~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~ 470 (746)
T PTZ00429 437 E---LLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYC 470 (746)
T ss_pred c---HHHHHHHHHhhcccccccHHHHHHHHHHHHhhH
Confidence 1 123444332111124677888988888999996
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.54 E-value=0.0005 Score=93.83 Aligned_cols=527 Identities=14% Similarity=0.122 Sum_probs=284.8
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhc-CchhHHHHHHHHHHHHHhh---h
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINH-MYEERRLLVAQSCGELAEF---V 572 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~D-d~dEVRlLvAescg~La~~---v 572 (1188)
+......+..+++++++..+..++..+..++..-+. .-.+.-.+|.+-+++.+ ....+|.-+|-+++.|+.- .
T Consensus 187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 445778999999999999999888877777654332 22345688999998865 4458999999999998852 1
Q ss_pred ChhhhhhhhHHHHHHhhcCCcHH---------HHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhH-HHHHHHh
Q 001018 573 RPEIRDSLILSIVQQLVEDSATV---------VREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVV-VETTFKE 642 (1188)
Q Consensus 573 g~e~r~slLL~~LqqL~eD~e~~---------VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~V-r~aa~~~ 642 (1188)
.......--+|+|..+....+.. .++.|+-.|+.||... ..+++.+-.+++.....+ ...+...
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gA 340 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGA 340 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhh
Confidence 11122222467777766544433 4888999999999765 234555555544332222 1111112
Q ss_pred h----------------------HHHHHhcccch------HHHHHHH--------HHHHhhhhccCCCccccchhhhhhh
Q 001018 643 L----------------------LPAVINWGSKL------DHILRVL--------LSYILSSAQRCPPLSGVEGSVESHL 686 (1188)
Q Consensus 643 L----------------------lpala~~~~~~------~~ll~~l--------l~~L~~~v~~lp~~~~v~~~la~~l 686 (1188)
+ .+.+.+++... +.+...+ +.+++.+ .++...+-+.+
T Consensus 341 Layll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~-------~daik~LV~LL 413 (2102)
T PLN03200 341 LAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH-------AEAKKVLVGLI 413 (2102)
T ss_pred HHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh-------ccchhhhhhhh
Confidence 2 12222222110 0000000 0000000 00000000000
Q ss_pred ----hhhhhhhhhhHHHHHH-------H--HHHHHHHHHHHHhhhCCCCCCCCCcccc-cchhhhhhhhcCCCCccchhh
Q 001018 687 ----RVLGERERWNLEVLLR-------M--MAELLPFMQKNAIETCPFSSVSLSEETV-FPSSLLELYAGGHIEWPAFEW 752 (1188)
Q Consensus 687 ----~~Lg~d~sWrV~~~l~-------~--l~~LLP~i~~~l~~~~pf~s~~qd~evr-l~~~ll~l~~~~~~~w~~~~w 752 (1188)
...-.+.-|.++++.. . -...+|.+...+.. . +...+ .....+.....+..+ .....
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s------~--s~~iQ~~A~~~L~nLa~~nde-nr~aI 484 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL------S--SEQQQEYAVALLAILTDEVDE-SKWAI 484 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC------C--CHHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 0111223333333220 1 11246666665541 1 11111 111111111111100 00111
Q ss_pred HHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHHHHHHHHHHhCCccccccCCccccccccCCC
Q 001018 753 MHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYL----THIMLPVFMVAVGDNANLTFFPSTIHSGIRGLK 828 (1188)
Q Consensus 753 l~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t----~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~ 828 (1188)
+....+|.+++|. ...+.++|...+-.+..+|.. ..+.. ..-.+|.++.+|++.... +
T Consensus 485 ieaGaIP~LV~LL---~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~-~------------- 546 (2102)
T PLN03200 485 TAAGGIPPLVQLL---ETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPK-G------------- 546 (2102)
T ss_pred HHCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHH-H-------------
Confidence 2334889999996 666789999999999999972 22211 223578888888765210 0
Q ss_pred cchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHh---hhc-hhhH-----H
Q 001018 829 PRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRF---LCT-FEEH-----H 899 (1188)
Q Consensus 829 ~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~---Lg~-~e~~-----~ 899 (1188)
+..+...+ ..+ . -.. +.+.+ ..+..|. .+.+.++.. + .+.++.. ++. .+.. .
T Consensus 547 -q~~Aa~AL--~nL---i-----~~~-d~~~I-~~Lv~LL--lsdd~~~~~-~---aL~vLgnIlsl~~~~d~~~~g~~~ 607 (2102)
T PLN03200 547 -QEIAAKTL--TKL---V-----RTA-DAATI-SQLTALL--LGDLPESKV-H---VLDVLGHVLSVASLEDLVREGSAA 607 (2102)
T ss_pred -HHHHHHHH--HHH---H-----hcc-chhHH-HHHHHHh--cCCChhHHH-H---HHHHHHHHHhhcchhHHHHHhhhc
Confidence 00110000 000 0 000 11111 1111111 011111111 1 1222211 111 1111 2
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH--
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND-- 974 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e-- 974 (1188)
...+|.|.+++.++.+.++-.++..+..+... +....+....+|.|+.|.+..+.+||..+..||..++.....+
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH
Confidence 35899999999999999999999999888653 3345777889999999999999999999999999999633322
Q ss_pred -HHH-HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH--HHHH-HHHHHHHHhhc--CCCCChhhHHHHHHHHHHHH
Q 001018 975 -MIV-DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE--RLRD-YLLSKIFQLSA--VPSSSSDVMRRRERANAFCE 1047 (1188)
Q Consensus 975 -~~~-ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~--~~r~-~IlP~L~~L~~--vpN~~~~~~~R~~vAk~l~~ 1047 (1188)
.++ ..+.+-+..+|.+++..+...++.++..+...-+. +++. .++|.|..+.. .+.. |.+.|-+|..
T Consensus 688 ~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~------k~~Aa~AL~~ 761 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG------KRNAARALAQ 761 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH------HHHHHHHHHH
Confidence 233 33666688899999999999999999999876654 4566 67788888876 4444 8888888888
Q ss_pred HHHhhcccc-CchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHH
Q 001018 1048 SIRALDATE-LSATSVRDFLLPAIQNLLKDADSLDPAHKEALEII 1091 (1188)
Q Consensus 1048 a~~aL~~~~-l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i 1091 (1188)
..+.-+..+ +..-......++.|-.+++-+|.=..+--++++.+
T Consensus 762 L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l 806 (2102)
T PLN03200 762 LLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEAL 806 (2102)
T ss_pred HHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 776554332 21222233334444445554665555544444443
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.52 E-value=0.00081 Score=84.04 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=80.3
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh---------hhhhhhHHH-h-hccCCCcchHHHHHHH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT---------SMQVLPALV-T-LGSDQNLNVKYASIDA 963 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l---------s~~VlPaLv-~-LasD~d~dVR~aaieA 963 (1188)
++.+...+.|++...+.|++|-|---+.....++++++-+... -..+.-+.. . .++|.|-.||..+|.+
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIsc 593 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISC 593 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5666788999999999999999999999999999888744211 122222222 2 4689999999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHhc
Q 001018 964 FGAVAQHFKNDMIVDKIRVQMDAFLED-GSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 964 l~~LA~~l~~e~~~ekl~~~~~slL~D-~~~~vR~~vv~al~~l~ 1007 (1188)
++.+...+| |+....+.+.+.-+++- ++-.-|.+.++|++-|+
T Consensus 594 mgq~i~~fg-D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 594 MGQIIANFG-DFLGNELPRTLPILLERLGNEITRLTAVKALTLIA 637 (1233)
T ss_pred HHHHHHHHh-hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 999999999 44443333333333221 24467888999999886
No 23
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.50 E-value=9.9e-06 Score=102.44 Aligned_cols=313 Identities=17% Similarity=0.226 Sum_probs=200.2
Q ss_pred HHHHHHHHhhc-CchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC---ch--
Q 001018 542 LLPQCWEQINH-MYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN---TD-- 615 (1188)
Q Consensus 542 LLP~l~eli~D-d~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~---~d-- 615 (1188)
+++.+..-+.+ ++-.-++.+.+-+..|+.|+..+..-.-+||.+-.|..|..+.||..|...|..+.+.+-+ .+
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 44444333322 5666788888999999999999998889999999999999999999999999998877533 22
Q ss_pred hhh-hHHHHHHHhccC-CChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhh
Q 001018 616 KYF-KVEDLMFQLVCD-PSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERE 693 (1188)
Q Consensus 616 ~~~-qi~~~f~~Ll~D-~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~ 693 (1188)
++- =|+|.+..|+.| ....||.|-+..+ +.+|+-.. ..+ . +.+.+ ++. |+.....+
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnl-a~LA~tA~---rFl-e-~~q~~----~~~---g~~n~~ns--------- 560 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNL-AQLAKTAY---RFL-E-LTQEL----RQA---GMLNDPNS--------- 560 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhH-HHHHHHHH---HHH-H-HHHHH----Hhc---ccccCccc---------
Confidence 222 378888999999 6778887776666 66664211 110 0 11110 111 00000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcH
Q 001018 694 RWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKED 773 (1188)
Q Consensus 694 sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sW 773 (1188)
..-++-.++..+- -+++.+=-.+..| +.|..-
T Consensus 561 -------------------------------et~~~~~~~~~~~--------------~L~~~V~~~v~sL---lsd~~~ 592 (1431)
T KOG1240|consen 561 -------------------------------ETAPEQNYNTELQ--------------ALHHTVEQMVSSL---LSDSPP 592 (1431)
T ss_pred -------------------------------ccccccccchHHH--------------HHHHHHHHHHHHH---HcCCch
Confidence 0001111111111 1222222222333 278888
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCC
Q 001018 774 NLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGA 853 (1188)
Q Consensus 774 rVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~ 853 (1188)
-||.++.+.|-.||..||++-++..|++.....|+|.. - ++ |.+
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD-w---~L-----------R~a--------------------- 636 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD-W---RL-----------RGA--------------------- 636 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc-H---HH-----------HHH---------------------
Confidence 89999999999999999999999999999999999973 1 10 110
Q ss_pred CCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--
Q 001018 854 PSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPY-- 931 (1188)
Q Consensus 854 ~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~-- 931 (1188)
|+..++- .+..-+|+ ...+.++|.+.+.+.|.-+.|=.+|...|.-|.+.
T Consensus 637 ---------FfdsI~g-vsi~VG~r------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 637 ---------FFDSIVG-VSIFVGWR------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred ---------HHhhccc-eEEEEeee------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 2222211 12221233 23477999999999999999988888888887665
Q ss_pred hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhc
Q 001018 932 INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLE 989 (1188)
Q Consensus 932 ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~ 989 (1188)
+. +..-..++-.+.-|.=.|+-=||.++..-|-.++.+++.-++.=+|.|.+..|++
T Consensus 689 l~-K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 689 LR-KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred cc-hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 22 1111222333333444678889999999999999998887766667777666665
No 24
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00022 Score=87.65 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=56.2
Q ss_pred hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHH
Q 001018 581 ILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRV 660 (1188)
Q Consensus 581 LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ 660 (1188)
+|-.+++.+.|.++.||..||..+.++-..=++. +.+++++...|+.|.++-|.-+|+-.| -..+++.-.++-.
T Consensus 144 ~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF----~evCPerldLIHk 217 (968)
T KOG1060|consen 144 MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAF----EEVCPERLDLIHK 217 (968)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHH----HHhchhHHHHhhH
Confidence 3444577899999999999999998877654433 349999999999999999998885444 3333332233334
Q ss_pred HHHHHhh
Q 001018 661 LLSYILS 667 (1188)
Q Consensus 661 ll~~L~~ 667 (1188)
-+.+||.
T Consensus 218 nyrklC~ 224 (968)
T KOG1060|consen 218 NYRKLCR 224 (968)
T ss_pred HHHHHHh
Confidence 4555543
No 25
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.41 E-value=0.00012 Score=88.91 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=106.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHh
Q 001018 509 NLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQL 588 (1188)
Q Consensus 509 nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL 588 (1188)
-|+=|||...|..--+-+..+|+..|-....+-+=| =++++.+=||=.+|-+++.++..+|-+. ++|.|..+
T Consensus 448 pllided~yar~egreIisnLakaaGla~mistmrp----Didn~deYVRnttarafavvasalgip~----llpfLkav 519 (1172)
T KOG0213|consen 448 PLLIDEDYYARVEGREIISNLAKAAGLATMISTMRP----DIDNKDEYVRNTTARAFAVVASALGIPA----LLPFLKAV 519 (1172)
T ss_pred cceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcC----CcccccHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHH
Confidence 455678888887665566667777776554444444 4666788899999999999999998553 69999999
Q ss_pred hcCC-cHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccch
Q 001018 589 VEDS-ATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKL 654 (1188)
Q Consensus 589 ~eD~-e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~ 654 (1188)
|.-+ +|.-|..-++....||..++-.. ....++.++...+.|.+..||..++-.+ .++++.....
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlal-salaeaa~Py 587 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALAL-SALAEAATPY 587 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHH-HHHHHhcCCc
Confidence 9887 99999999999999988877543 2446788888999999999999887777 7777765443
No 26
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.28 E-value=0.0023 Score=80.20 Aligned_cols=470 Identities=17% Similarity=0.228 Sum_probs=240.2
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHh--hHHHHHHHHh---hcCchhHHHHHHHHHHHHHhhhC
Q 001018 499 TRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEM--ELLPQCWEQI---NHMYEERRLLVAQSCGELAEFVR 573 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~--ELLP~l~eli---~Dd~dEVRlLvAescg~La~~vg 573 (1188)
-..-+-+++..|-+++++..-|.-++.+++|++..|...... -++|.+.+.. +.+.||.|-...++|+.|..+.+
T Consensus 210 y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 210 YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 344455888899999999999999999999999999744332 3666665544 77889999999999999997765
Q ss_pred hhhhhhh--hHHHHHH-h------------------h---------------cCCcHHHHHHHHHHHHhhcccCCC--ch
Q 001018 574 PEIRDSL--ILSIVQQ-L------------------V---------------EDSATVVREAAARNLALLLPLFPN--TD 615 (1188)
Q Consensus 574 ~e~r~sl--LL~~Lqq-L------------------~---------------eD~e~~VR~aAAksL~~l~~~l~~--~d 615 (1188)
.++..+. ++..+.+ + . +|-+|-||+||||++..+...=.+ ++
T Consensus 290 ~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~ 369 (1233)
T KOG1824|consen 290 KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPD 369 (1233)
T ss_pred hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 5443221 2222211 0 0 134799999999999877643221 12
Q ss_pred hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhh-hhhh
Q 001018 616 KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLG-ERER 694 (1188)
Q Consensus 616 ~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg-~d~s 694 (1188)
.|..+-|.++.=.++-+..|+.-....+... +..++....+-..-.. ...-| .-..
T Consensus 370 ~~q~l~p~lI~RfkEREEnVk~dvf~~yi~l----------------------l~qt~~~~~~~~d~d~-~e~~g~~s~~ 426 (1233)
T KOG1824|consen 370 FYQTLGPALISRFKEREENVKADVFHAYIAL----------------------LKQTRPVIEVLADNDA-MEQGGTPSDL 426 (1233)
T ss_pred HHHHhCHHHHHHHHHHhhhHHHHHHHHHHHH----------------------HHcCCCCcccccCchh-hhccCCccch
Confidence 3444444444444444555544433332111 1122221100000000 00000 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhhhhhhcCCCCccchhhHHh---hhhHHHHHhhccCCC
Q 001018 695 WNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLLELYAGGHIEWPAFEWMHV---DCFPGLIQLACLLPE 770 (1188)
Q Consensus 695 WrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll~l~~~~~~~w~~~~wl~~---~lLP~l~~LA~~~~D 770 (1188)
.++..-.|.|.+.+...+---+...-..++.. ..++..++ +-+.+ .++|.|+-. ++|
T Consensus 427 -------~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp---------~~l~~~~~slvpgI~~~---l~D 487 (1233)
T KOG1824|consen 427 -------SMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP---------GALAQHIPSLVPGIIYS---LND 487 (1233)
T ss_pred -------HHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc---------chhhhcccccchhhhhh---cCC
Confidence 14444444444433322100000000111110 11111111 11233 367777665 488
Q ss_pred CcHH---HHHHHHHHHHHHHHhhCHHHHHH---HHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhh
Q 001018 771 KEDN---LRNRITKFLLAVSKQFGDSYLTH---IMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLP 844 (1188)
Q Consensus 771 ~sWr---VR~Aia~~l~~La~~fG~e~t~~---~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP 844 (1188)
++-. ...++.-....|+. =|++.|.. .|.|..+...+|+.+ +++..+++-
T Consensus 488 kSsss~~ki~~L~fl~~~L~s-~~p~~fhp~~~~Ls~~v~~aV~d~fy-----------------------KisaEAL~v 543 (1233)
T KOG1824|consen 488 KSSSSNLKIDALVFLYSALIS-HPPEVFHPHLSALSPPVVAAVGDPFY-----------------------KISAEALLV 543 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHhc-CChhhcccchhhhhhHHHHHhcCchH-----------------------hhhHHHHHH
Confidence 7642 11222222222222 25555544 345555555555431 001111100
Q ss_pred HHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHh--hcCCChhHHHHHH
Q 001018 845 LLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEM--VVSSNIDMKINAA 922 (1188)
Q Consensus 845 ~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~l--v~D~~pnVR~naa 922 (1188)
. .++..|++.+..-.+ + ........+....++. .+|..-.||..++
T Consensus 544 ---~---------~~lvkvirpl~~~~~-------------------~-d~~~~v~~m~~~tl~rL~a~d~DqeVkeraI 591 (1233)
T KOG1824|consen 544 ---C---------QQLVKVIRPLQPPSS-------------------F-DASPYVKTMYDCTLQRLKATDSDQEVKERAI 591 (1233)
T ss_pred ---H---------HHHHHHhcccCCCcc-------------------C-CCChhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 0 001112221111000 0 0111122233333332 4688899999999
Q ss_pred HHHHHHHhhhchhhhhhhhhhHHHh----hccCCCcchHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHhcCCChhH
Q 001018 923 NLLKVIVPYINAKVTSMQVLPALVT----LGSDQNLNVKYASIDAFGAVAQH---FKNDMIVDKIRVQMDAFLEDGSHEA 995 (1188)
Q Consensus 923 k~L~~L~~~ig~~~ls~~VlPaLv~----LasD~d~dVR~aaieAl~~LA~~---l~~e~~~ekl~~~~~slL~D~~~~v 995 (1188)
....+++..|| +.+...+-++|.- |+++. -|.++++|+..++.. +.-..+..++.+.+.+|+.-.+...
T Consensus 592 scmgq~i~~fg-D~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~l 667 (1233)
T KOG1824|consen 592 SCMGQIIANFG-DFLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRAL 667 (1233)
T ss_pred HHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 5555544444433 55554 589999999999974 4445677889999999998888899
Q ss_pred HHHHHHHHHHhcccCCH----HHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHHHHHHHhhccccCchhhhhhhHHHHH
Q 001018 996 TVAVVRALAVAVPHTTE----RLRDYLLSKIFQLSAVPSSSSDVMRRR-ERANAFCESIRALDATELSATSVRDFLLPAI 1070 (1188)
Q Consensus 996 R~~vv~al~~l~p~~~~----~~r~~IlP~L~~L~~vpN~~~~~~~R~-~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L 1070 (1188)
|.+++.++-.++.+... ...+.++-.+..|. +...-+. +.|=+++..+-....+ +.-.+.+.||+.+
T Consensus 668 r~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li------sesdlhvt~~a~~~L~tl~~~~ps--~l~~~~~~iL~~i 739 (1233)
T KOG1824|consen 668 RLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI------SESDLHVTQLAVAFLTTLAIIQPS--SLLKISNPILDEI 739 (1233)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHhcccH--HHHHHhhhhHHHH
Confidence 99999999998877633 33332332222222 2222232 2222222222211112 2235777888888
Q ss_pred HHHHhccC
Q 001018 1071 QNLLKDAD 1078 (1188)
Q Consensus 1071 ~~L~~D~d 1078 (1188)
..|++-+-
T Consensus 740 i~ll~Spl 747 (1233)
T KOG1824|consen 740 IRLLRSPL 747 (1233)
T ss_pred HHHhhCcc
Confidence 88887443
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=0.00094 Score=81.08 Aligned_cols=466 Identities=15% Similarity=0.115 Sum_probs=266.6
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHH-hhcCCcHHHHHHHHHHHHhhcccCCCchh-hhhH
Q 001018 543 LPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQ-LVEDSATVVREAAARNLALLLPLFPNTDK-YFKV 620 (1188)
Q Consensus 543 LP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~Lqq-L~eD~e~~VR~aAAksL~~l~~~l~~~d~-~~qi 620 (1188)
+|++-....|...-||=-++++...... ..+......+.|.+++ |-.+.-..+|..++-..+.++..+...|+ ...+
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~-~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAIN-QHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHH-hhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 4444444455666666666665444333 3345555667888877 77777888898888877877777766654 4467
Q ss_pred HHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhh--hhhhhHH
Q 001018 621 EDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGE--RERWNLE 698 (1188)
Q Consensus 621 ~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~--d~sWrV~ 698 (1188)
.+.++.-+.=|++.|+.+....+.|............+...+.+++.. -.+..+.++...++..+.-.+. ..-|
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~i~~~~~~--- 173 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLGIESLKEF--- 173 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcHHhhhhhh---
Confidence 788888888899999988877774443332222222222333333321 1222222222223322211110 0100
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhh-hhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHH
Q 001018 699 VLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSL-LELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRN 777 (1188)
Q Consensus 699 ~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~l-l~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~ 777 (1188)
.++-.+...+. +.+....|-...+ ...+.... + +..+--.-+++|.+..-. .|+.-.||.
T Consensus 174 -------~~l~~l~~ai~-------dk~~~~~re~~~~a~~~~~~~L-g-~~~EPyiv~~lp~il~~~---~d~~~~Vr~ 234 (569)
T KOG1242|consen 174 -------GFLDNLSKAII-------DKKSALNREAALLAFEAAQGNL-G-PPFEPYIVPILPSILTNF---GDKINKVRE 234 (569)
T ss_pred -------hHHHHHHHHhc-------ccchhhcHHHHHHHHHHHHHhc-C-CCCCchHHhhHHHHHHHh---hccchhhhH
Confidence 11111222222 1122222210000 00000000 0 111223345777777764 899999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcc
Q 001018 778 RITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKH 857 (1188)
Q Consensus 778 Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~ 857 (1188)
|.......+..+|-..-.+..|.+..-.+..+
T Consensus 235 Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~------------------------------------------------ 266 (569)
T KOG1242|consen 235 AAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA------------------------------------------------ 266 (569)
T ss_pred HHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH------------------------------------------------
Confidence 99999998888887666555554444333311
Q ss_pred hhhhHHHHHHHhhcccccccccchhh-hHHHHHHhhhc---hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc
Q 001018 858 DQLADYLRKLLVEGTMKENHTVKCNA-EIVNAVRFLCT---FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN 933 (1188)
Q Consensus 858 ~~l~nyL~rLt~~~s~~~~W~v~~~p-~ll~ai~~Lg~---~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig 933 (1188)
.|+...+. +++.++.. |. -+.....++|.+.+-+.|+-|.||-+....+.+++.+++
T Consensus 267 ------------------kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 267 ------------------KWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred ------------------hhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 13321111 01111000 01 133457789999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHH-hhch---HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 934 AKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ-HFKN---DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 934 ~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~-~l~~---e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
..-+ +.++|.|+.=..||...+. +++..|.. ++-. .--...+.|.+.+-+.+++..++-..+..+.-++--
T Consensus 328 N~dI-~~~ip~Lld~l~dp~~~~~----e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 328 NPDI-QKIIPTLLDALADPSCYTP----ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred cHHH-HHHHHHHHHHhcCcccchH----HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 8887 5789999999999986654 34433332 2111 123477888888889998877766666655555554
Q ss_pred C-CHHHHH----HHHHHHHHhhc--CCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccCCCCh
Q 001018 1010 T-TERLRD----YLLSKIFQLSA--VPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDP 1082 (1188)
Q Consensus 1010 ~-~~~~r~----~IlP~L~~L~~--vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~ 1082 (1188)
+ ++..+. .++|-|-.-.. +|.. |-..|++|+...+.+..... ..++|-|.....+.- .+-
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEv------R~vaarAL~~l~e~~g~~~f------~d~~p~l~e~~~~~k-~~~ 469 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEV------RAVAARALGALLERLGEVSF------DDLIPELSETLTSEK-SLV 469 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhH------HHHHHHHHHHHHHHHHhhcc------cccccHHHHhhccch-hhh
Confidence 5 555554 36666655544 4666 88899999888888764422 457888888776332 222
Q ss_pred HHHHHHHHHHhhccCCchhhhhhhhhhhccccccc
Q 001018 1083 AHKEALEIIMKDRSGGTLETISKVMGAHLGITSSV 1117 (1188)
Q Consensus 1083 ~~k~~l~~i~ke~~~~~~~~~~~~~~~~~~~~~~~ 1117 (1188)
..-.+...+-..-.|+..+-.-|.|++-+.-++++
T Consensus 470 ~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~ 504 (569)
T KOG1242|consen 470 DRSGAAQDLSEVLAGLGVEKVEDILPEILANASSV 504 (569)
T ss_pred hhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhc
Confidence 23333444433334566677778887666555543
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.17 E-value=0.0048 Score=84.71 Aligned_cols=324 Identities=12% Similarity=0.098 Sum_probs=197.0
Q ss_pred hhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHH-----HHHHHHHHHHHHhCCccccccCCccccccccCCCcch
Q 001018 757 CFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSY-----LTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRT 831 (1188)
Q Consensus 757 lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~-----t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rt 831 (1188)
.+|.++++- ...+-.++...+..+..++. |.+. ...-.+|.+..+|..... .+ +..+.-.|.||....
T Consensus 447 gIp~LV~LL---~s~s~~iQ~~A~~~L~nLa~--~ndenr~aIieaGaIP~LV~LL~s~~~-~i-qeeAawAL~NLa~~~ 519 (2102)
T PLN03200 447 GVQLLISLL---GLSSEQQQEYAVALLAILTD--EVDESKWAITAAGGIPPLVQLLETGSQ-KA-KEDSATVLWNLCCHS 519 (2102)
T ss_pred cHHHHHHHH---cCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHcCCCH-HH-HHHHHHHHHHHhCCc
Confidence 789999886 44566788888888888875 3322 234579999999965421 11 111111111111000
Q ss_pred hHhhhhhhhchhhHHh--hhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHh
Q 001018 832 AVGERLATMGVLPLLL--AGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEM 909 (1188)
Q Consensus 832 aig~~l~~~~lLP~il--~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~l 909 (1188)
. + ...++ .|++| .|-++... +.+..... .+.+|..|... .....++-++++
T Consensus 520 ~---q------ir~iV~~aGAIp----------pLV~LL~s----gd~~~q~~--Aa~AL~nLi~~--~d~~~I~~Lv~L 572 (2102)
T PLN03200 520 E---D------IRACVESAGAVP----------ALLWLLKN----GGPKGQEI--AAKTLTKLVRT--ADAATISQLTAL 572 (2102)
T ss_pred H---H------HHHHHHHCCCHH----------HHHHHHhC----CCHHHHHH--HHHHHHHHHhc--cchhHHHHHHHH
Confidence 0 0 00111 12222 22222211 11222111 13344333210 012244778899
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhchhh------hhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh---chHHHHHHH
Q 001018 910 VVSSNIDMKINAANLLKVIVPYINAKV------TSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF---KNDMIVDKI 980 (1188)
Q Consensus 910 v~D~~pnVR~naak~L~~L~~~ig~~~------ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l---~~e~~~ekl 980 (1188)
+..+.++++..++..+.-+....+.+- .....+|.|++|.+.++-++|..+..+|..++..- ....+....
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 999999999999998877766544431 23468999999999999999999999998887631 123455678
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH----HHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhcc-
Q 001018 981 RVQMDAFLEDGSHEATVAVVRALAVAVPHTTER----LRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDA- 1054 (1188)
Q Consensus 981 ~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~----~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~- 1054 (1188)
.|.+..+|..+...++..++.+++.+.-..... +++ -++|.|..|.+.++. + +...-+.++..+..
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~------~--v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI------E--VAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh------H--HHHHHHHHHHHHHcC
Confidence 888899999999999999999999988655443 344 467778888887766 2 34444455544442
Q ss_pred ccCchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHhhccCCchhhhhhhh----hhhccccccccccccCC
Q 001018 1055 TELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVM----GAHLGITSSVTSFFGGG 1124 (1188)
Q Consensus 1055 ~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~ke~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1124 (1188)
...-.+......+|.|-.+++. .-+..++.+...+..=..+++.++..+.+ |+.+.+.+.-++-=++.
T Consensus 725 ~e~~~ei~~~~~I~~Lv~lLr~--G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 725 PEVAAEALAEDIILPLTRVLRE--GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred chHHHHHHhcCcHHHHHHHHHh--CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 2344455666677888887763 33667777888877667788877744333 66665555444444444
No 29
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0055 Score=75.71 Aligned_cols=350 Identities=16% Similarity=0.213 Sum_probs=221.9
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchh-HHHHHHHHHHHHHhhhCh
Q 001018 496 DTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEE-RRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 496 ~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dE-VRlLvAescg~La~~vg~ 574 (1188)
+.+.|..+.+....-++.+.|..+-.|+..++.||..==|...+-+|++.+..-+.+.+.+ ++-.+.|.+|.+.+.+.+
T Consensus 84 ~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p 163 (859)
T KOG1241|consen 84 PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP 163 (859)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH
Confidence 5567777777777778888899999999999999988778999999999998877777777 888889999999988877
Q ss_pred h---hhhhhhHHHHHH--hhcCCcHHHHHHHHHHHHhhcc----cCCCchhhhhHHHHHHHhccC----CChhHHHHHHH
Q 001018 575 E---IRDSLILSIVQQ--LVEDSATVVREAAARNLALLLP----LFPNTDKYFKVEDLMFQLVCD----PSGVVVETTFK 641 (1188)
Q Consensus 575 e---~r~slLL~~Lqq--L~eD~e~~VR~aAAksL~~l~~----~l~~~d~~~qi~~~f~~Ll~D----~s~~Vr~aa~~ 641 (1188)
+ .....+|-.+-+ ..+..+..||-||.+.|..=.+ .|..+ .=..++++.+++ +..+|+.+|.+
T Consensus 164 evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E----~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 164 EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE----MERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH----hhhceeeeeeeecccCCcHHHHHHHHH
Confidence 5 233335555544 5667788999999888764332 44444 223445555554 46677777765
Q ss_pred hhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001018 642 ELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPF 721 (1188)
Q Consensus 642 ~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf 721 (1188)
.| -.+. ...+.++.+ | +-+.+++.-...+.
T Consensus 240 Cl-vkIm----------~LyY~~m~~-------------------------------y---M~~alfaitl~amk----- 269 (859)
T KOG1241|consen 240 CL-VKIM----------SLYYEFMEP-------------------------------Y---MEQALFAITLAAMK----- 269 (859)
T ss_pred HH-HHHH----------HHHHHHHHH-------------------------------H---HHHHHHHHHHHHHc-----
Confidence 55 1111 111222211 1 22223332222222
Q ss_pred CCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHH-------hhCH--
Q 001018 722 SSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSK-------QFGD-- 792 (1188)
Q Consensus 722 ~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~-------~fG~-- 792 (1188)
++ ..+| -...++++..+|+ -.|.
T Consensus 270 -s~--~deV---------------------------------------------alQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 270 -SD--NDEV---------------------------------------------ALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred -CC--cHHH---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 1111 1111222221111 0000
Q ss_pred ------------HHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhh
Q 001018 793 ------------SYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQL 860 (1188)
Q Consensus 793 ------------e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l 860 (1188)
.-.-..++|..+.+|.-.
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq-------------------------------------------------- 331 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQ-------------------------------------------------- 331 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhC--------------------------------------------------
Confidence 011223455555554211
Q ss_pred hHHHHHHHhhcccc-cccccchhhhHHHHHHhh--hchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh--
Q 001018 861 ADYLRKLLVEGTMK-ENHTVKCNAEIVNAVRFL--CTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK-- 935 (1188)
Q Consensus 861 ~nyL~rLt~~~s~~-~~W~v~~~p~ll~ai~~L--g~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~-- 935 (1188)
+...+ --|....++ .-++..+ |..+.+..++||++-+-...|.=.-|-+++-.|..+-+.-..+
T Consensus 332 ---------de~~d~DdWnp~kAA--g~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L 400 (859)
T KOG1241|consen 332 ---------DEDDDDDDWNPAKAA--GVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL 400 (859)
T ss_pred ---------CCCcccccCcHHHHH--HHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence 00000 137774444 3333332 1336677899999999999888888999999998887665554
Q ss_pred -hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 936 -VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF----KNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 936 -~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l----~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
-+....+|.++.|..|+..-||-++.-+|+.++..+ ++......+...+..||.|. +.+..+++.+|-.++.+
T Consensus 401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEA 478 (859)
T ss_pred hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999864 44555666778888899886 47888888888888733
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.11 E-value=0.011 Score=72.67 Aligned_cols=269 Identities=15% Similarity=0.173 Sum_probs=155.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh---hhhhhhhHH
Q 001018 507 LFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP---EIRDSLILS 583 (1188)
Q Consensus 507 l~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~---e~r~slLL~ 583 (1188)
+|+.+.+.+..+=-.+.+.+..+.....+...-..+.|++...+.|.++.||.+++..++.++..-++ -.....+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 77777766666666666666777776667777778888899999999999999999988887643211 122344788
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhH-----HHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHH
Q 001018 584 IVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKV-----EDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHIL 658 (1188)
Q Consensus 584 ~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi-----~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll 658 (1188)
.+..+..|++..|-.+|++.|..++..-.. +..+ ...+..++..+++.||-.....+ ..+++...+....+
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~---~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~-v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEG---LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELL-VEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchh---HHHHhCcchHHHHHHHHhccCHHHHHHHHHHH-HHHHhcCHHHHHHH
Confidence 899999999999999999999999975332 2233 67778888777888887776665 34444332222332
Q ss_pred HH--HHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCc---ccccc
Q 001018 659 RV--LLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSE---ETVFP 733 (1188)
Q Consensus 659 ~~--ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~---evrl~ 733 (1188)
.. +++.++..+.. .|.-++......+..+++ ..+...++.+ ..+++.+...+.+. ..|+ ...+.
T Consensus 199 ~~sgll~~ll~eL~~--dDiLvqlnalell~~La~-~~~g~~yL~~--~gi~~~L~~~l~~~------~~dp~~~~~~l~ 267 (503)
T PF10508_consen 199 VNSGLLDLLLKELDS--DDILVQLNALELLSELAE-TPHGLQYLEQ--QGIFDKLSNLLQDS------EEDPRLSSLLLP 267 (503)
T ss_pred HhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHc-ChhHHHHHHh--CCHHHHHHHHHhcc------ccCCcccchhhh
Confidence 22 56666544332 232222222222234444 2234444333 24555555544321 1222 11111
Q ss_pred hhhhhhhhcCCCCccchhhHH--hhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh-CHHHH
Q 001018 734 SSLLELYAGGHIEWPAFEWMH--VDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQF-GDSYL 795 (1188)
Q Consensus 734 ~~ll~l~~~~~~~w~~~~wl~--~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f-G~e~t 795 (1188)
+.++.|.. ...+-...++. ..++..+.++. ....-..+..+.+.+..+|..- |+...
T Consensus 268 -g~~~f~g~-la~~~~~~v~~~~p~~~~~l~~~~---~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 268 -GRMKFFGN-LARVSPQEVLELYPAFLERLFSML---ESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred -hHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 22222211 00110112221 22333344443 4555567888888888887554 55555
No 31
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.072 Score=64.39 Aligned_cols=448 Identities=15% Similarity=0.167 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-hC--------c---------h-hhHhhHHHHHHHHh-------hcC
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKN-VG--------E---------M-RTEMELLPQCWEQI-------NHM 553 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~-lg--------~---------e-rt~~ELLP~l~eli-------~Dd 553 (1188)
-..|-++...-.|.+.+.|...+++-|.+|..- .. | . .....++|-+..++ .+|
T Consensus 261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 345666667778899999999999999777541 11 1 0 01233556554432 247
Q ss_pred chhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc---hhhhhHHHHHHHhccC
Q 001018 554 YEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT---DKYFKVEDLMFQLVCD 630 (1188)
Q Consensus 554 ~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~---d~~~qi~~~f~~Ll~D 630 (1188)
.|.+-..++.++..|++..|..+-.. +|..++|-...++|.=|+++|-.|+.+...=... -...|.+|....+..|
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D 419 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD 419 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc
Confidence 79999998888899999998876555 6899999999999999999999888776532211 1356788999999999
Q ss_pred CChhHHHHHHHhhHHHHHh----cccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 001018 631 PSGVVVETTFKELLPAVIN----WGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAE 706 (1188)
Q Consensus 631 ~s~~Vr~aa~~~Llpala~----~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~ 706 (1188)
+.--|.++++-.+ ..++. ..+...|+....-..+. -+.+||. .....+||..- ...+
T Consensus 420 ~~l~vk~ttAwc~-g~iad~va~~i~p~~Hl~~~vsa~li-Gl~D~p~--------------~~~ncsw~~~n---lv~h 480 (858)
T COG5215 420 SCLWVKSTTAWCF-GAIADHVAMIISPCGHLVLEVSASLI-GLMDCPF--------------RSINCSWRKEN---LVDH 480 (858)
T ss_pred ceeehhhHHHHHH-HHHHHHHHHhcCccccccHHHHHHHh-hhhccch--------------HHhhhHHHHHh---HHHh
Confidence 9999998887665 33332 22222343222111111 1234443 23345666553 2222
Q ss_pred HHH--------------HHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCc
Q 001018 707 LLP--------------FMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKE 772 (1188)
Q Consensus 707 LLP--------------~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~s 772 (1188)
+-| .|...++.. .+...+.. .+....+.++-.|. .-..
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~---------t~~~~Ne~----------------n~R~s~fsaLgtli---~~~~ 532 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKG---------TELALNES----------------NLRVSLFSALGTLI---LICP 532 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHH---------HHhhccch----------------hHHHHHHHHHHHHH---hhcc
Confidence 222 111111100 00000000 01111111111111 1112
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCC---ccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhh
Q 001018 773 DNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGD---NANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAG 849 (1188)
Q Consensus 773 WrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D---~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~g 849 (1188)
..|-..++....-..+.+| -+++.++. .+| |. .-.++.+ .++. ++..
T Consensus 533 d~V~~~~a~~~~~~~~kl~----------~~isv~~q~l~~eD----~~--------------~~~elqS-N~~~-vl~a 582 (858)
T COG5215 533 DAVSDILAGFYDYTSKKLD----------ECISVLGQILATED----QL--------------LVEELQS-NYIG-VLEA 582 (858)
T ss_pred hhHHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhHH----HH--------------HHHHHHH-HHHH-HHHH
Confidence 2232333322222222221 12222210 000 00 0000000 0000 0111
Q ss_pred hcCC-C---Ccc-hhhhHHHHHHHhhcccccccccchhhhHHHHHHhh----h-chhhHHHhHHHHHHHhhcCCChhHHH
Q 001018 850 VLGA-P---SKH-DQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFL----C-TFEEHHTMVFNILWEMVVSSNIDMKI 919 (1188)
Q Consensus 850 VL~~-~---~~~-~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~L----g-~~e~~~~~iLpiL~~lv~D~~pnVR~ 919 (1188)
|+-. . .+- ..+.+-+.|+....-. .+.+- .+..+|..| + .++++.+.+.|.+..-+.-...-|=.
T Consensus 583 iir~~~~~ie~v~D~lm~Lf~r~les~~~----t~~~~-dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~ 657 (858)
T COG5215 583 IIRTRRRDIEDVEDQLMELFIRILESTKP----TTAFG-DVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN 657 (858)
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHhccCC----chhhh-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence 1111 0 011 1134444444432100 11011 134455433 3 48999999999999999877778888
Q ss_pred HHHHHHHHHHhhhchh--hhhhhhhhHHHhhcc--CCCcchHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHhc-CC-
Q 001018 920 NAANLLKVIVPYINAK--VTSMQVLPALVTLGS--DQNLNVKYASIDAFGAVAQHFKNDM--IVDKIRVQMDAFLE-DG- 991 (1188)
Q Consensus 920 naak~L~~L~~~ig~~--~ls~~VlPaLv~Las--D~d~dVR~aaieAl~~LA~~l~~e~--~~ekl~~~~~slL~-D~- 991 (1188)
.++.....|+..+|.+ .....+...|+...+ -.+.++|=++...|+-+|..+|..| ..+-|.++|++.-+ ||
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~ 737 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPH 737 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC
Confidence 8888888898888875 234444555555443 3478899999999999999999876 45888888888643 22
Q ss_pred ---------ChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh-------hcCCCC
Q 001018 992 ---------SHEATVAVVRALAVAVPHTTERLRDYLLSKIFQL-------SAVPSS 1031 (1188)
Q Consensus 992 ---------~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L-------~~vpN~ 1031 (1188)
.-+++..+.-++-.|+..+..++ +.|+|++..+ +.-||-
T Consensus 738 ~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~-~~v~Pyv~sif~~i~~iaeDp~~ 792 (858)
T COG5215 738 SDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRV-RSVLPYVISIFHKIGMIAEDPNG 792 (858)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHhhhHHHHHHHHHHHhhcCCcc
Confidence 12455555556666665554221 1455544333 346776
No 32
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.94 E-value=0.0003 Score=86.23 Aligned_cols=240 Identities=16% Similarity=0.220 Sum_probs=183.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhh
Q 001018 769 PEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLA 848 (1188)
Q Consensus 769 ~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~ 848 (1188)
.-++-.-|.-+...+.+..++|-.++...+++|..+..+.= |. +...+++
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~------------------------g~--a~~~~lt---- 313 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEF------------------------GD--AASDFLT---- 313 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhc------------------------cc--cchhhhh----
Confidence 55666778888888888889999999999999988777610 00 0001111
Q ss_pred hhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 001018 849 GVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVI 928 (1188)
Q Consensus 849 gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L 928 (1188)
++-.+. ..+.. +.+...++|.+.+|.+-+.--||+-....+.+.
T Consensus 314 --------------pl~k~~---------------------k~ld~-~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~ 357 (690)
T KOG1243|consen 314 --------------PLFKLG---------------------KDLDE-EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKY 357 (690)
T ss_pred --------------HHHHhh---------------------hhccc-cccccchhhhHHHHhcCcchHHHHHHHHhHHHH
Confidence 111111 11212 447788999999999999999999999999999
Q ss_pred HhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 001018 929 VPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 929 ~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
++++..+.+..+|+|.+..-..|.+.-+|.-++.++..||.-++.+.+...+...+...-.|.+..+|.+..-++++|+|
T Consensus 358 i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 358 IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 99999999999999999999999999999999999999999999987878888899999889999999999999999999
Q ss_pred cCCHHHHH-H-HHHHHHHhhc-CCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccC--CCChH
Q 001018 1009 HTTERLRD-Y-LLSKIFQLSA-VPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDAD--SLDPA 1083 (1188)
Q Consensus 1009 ~~~~~~r~-~-IlP~L~~L~~-vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d--~l~~~ 1083 (1188)
+..+..|. - +.++...+-. .++- |. |. ..++.+. +...+.+.|...|+|.|-.|..|.+ -.+++
T Consensus 438 ~l~~~~R~~vL~~aftralkdpf~pa------R~--a~--v~~l~at-~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a 506 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTRALKDPFVPA------RK--AG--VLALAAT-QEYFDQSEVANKILPSLVPLTVDPEKTVRDTA 506 (690)
T ss_pred ccchhhhccccchhhhhhhcCCCCCc------hh--hh--hHHHhhc-ccccchhhhhhhccccccccccCcccchhhHH
Confidence 99999988 3 4444443433 3332 42 22 2333322 3456667899999999999998886 34444
Q ss_pred HH
Q 001018 1084 HK 1085 (1188)
Q Consensus 1084 ~k 1085 (1188)
.+
T Consensus 507 ~~ 508 (690)
T KOG1243|consen 507 EK 508 (690)
T ss_pred HH
Confidence 43
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.76 E-value=0.0001 Score=67.93 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=69.3
Q ss_pred HHHHHHhh-cCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHH
Q 001018 903 FNILWEMV-VSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIR 981 (1188)
Q Consensus 903 LpiL~~lv-~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~ 981 (1188)
+|.|.+.+ .|++|.||..++..|..+. ...++|.|..+.+|+++.||.+++.+++.+. . ++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~----~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG----D----PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----H----HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C----HHHH
Confidence 46777777 9999999999999988432 3478999999999999999999999999764 2 4456
Q ss_pred HHHHHHhcC-CChhHHHHHHHHHH
Q 001018 982 VQMDAFLED-GSHEATVAVVRALA 1004 (1188)
Q Consensus 982 ~~~~slL~D-~~~~vR~~vv~al~ 1004 (1188)
+.+..++.| ++..+|.+++.+|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 666666655 56788999999885
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.72 E-value=0.0017 Score=70.81 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=91.2
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhh-hhHHHhhccCCCcchHHHHHHHHHHHHHhhc-
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQV-LPALVTLGSDQNLNVKYASIDAFGAVAQHFK- 972 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~V-lPaLv~LasD~d~dVR~aaieAl~~LA~~l~- 972 (1188)
++.+.+.++|.|++.+.|....||-.+...|..|....+ ....+ .+.+....+++++.||..+..++..+....+
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 566789999999999999999999999999999998876 22344 7888889999999999999999999988777
Q ss_pred ------hHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHH
Q 001018 973 ------NDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERL 1014 (1188)
Q Consensus 973 ------~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~ 1014 (1188)
...+.+++.+.+...+.|++..+|-+.-++|..+..+++.+.
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 123457899999999999999999999999999876665543
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.019 Score=75.53 Aligned_cols=368 Identities=19% Similarity=0.194 Sum_probs=217.6
Q ss_pred HHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhCch--hhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh--hChhhh
Q 001018 503 LTHTLFNLIKRP-DEKQRRIIMDACVTLAKNVGEM--RTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF--VRPEIR 577 (1188)
Q Consensus 503 Ll~ll~nLiKdd-dp~vRr~aa~~l~~iA~~lg~e--rt~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~--vg~e~r 577 (1188)
|.--|++|.++- +=.-|+-|+-|+++||+..|.. -.-.-|+|-+...-=|...-|+-.++.--+.|.+= ---+.+
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y 1036 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEY 1036 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHH
Confidence 444456665543 3456888999999999987653 23344788777755566677777777777776632 112345
Q ss_pred hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchh---hhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccch
Q 001018 578 DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDK---YFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKL 654 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~---~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~ 654 (1188)
...|+.=|-.-+.+++||||+|..-.|..+..-=+.++. .-++....+....|--..||.||-+.. .++
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~-~~l------- 1108 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAA-RAL------- 1108 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------
Confidence 555566555667899999999999999999988665543 345666666677777888999884332 222
Q ss_pred HHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccch
Q 001018 655 DHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPS 734 (1188)
Q Consensus 655 ~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~ 734 (1188)
.+++-++++. +.++-+ .. ++..++|+++..-+
T Consensus 1109 ----sKl~vr~~d~---------~~~~~~--------~~---------~l~~iLPfLl~~gi------------------ 1140 (1702)
T KOG0915|consen 1109 ----SKLCVRICDV---------TNGAKG--------KE---------ALDIILPFLLDEGI------------------ 1140 (1702)
T ss_pred ----HHHHhhhccc---------CCcccH--------HH---------HHHHHHHHHhccCc------------------
Confidence 2223232221 111111 11 67778885444100
Q ss_pred hhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHHHhCCccc
Q 001018 735 SLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTH--IMLPVFMVAVGDNAN 812 (1188)
Q Consensus 735 ~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~--~LlP~fl~lL~D~~~ 812 (1188)
+ -+--.||..-+..+.+|++.-|+...-. +|+|.|+......++
T Consensus 1141 --m--------------------------------s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1141 --M--------------------------------SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred --c--------------------------------cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 0 0111577777888888888888765433 677888777655432
Q ss_pred cccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHH---
Q 001018 813 LTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAV--- 889 (1188)
Q Consensus 813 ~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai--- 889 (1188)
. ++.=|.-|. .+.. .+-+..+-...+- ..| +..+|
T Consensus 1187 ~---------vLnYls~r~----------------------~~~e---~ealDt~R~s~ak-------ssp-mmeTi~~c 1224 (1702)
T KOG0915|consen 1187 Q---------VLNYLSLRL----------------------INIE---TEALDTLRASAAK-------SSP-MMETINKC 1224 (1702)
T ss_pred H---------HHHHHHHhh----------------------hhhH---HHHHHHHHHhhhc-------CCc-HHHHHHHH
Confidence 1 000000000 0000 0111111000000 111 11121
Q ss_pred -HhhhchhhHHHhHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhhchhh--hhhhhhhHHHhhccCCCcchHHHHHHHHH
Q 001018 890 -RFLCTFEEHHTMVFNILWEMVVSSN-IDMKINAANLLKVIVPYINAKV--TSMQVLPALVTLGSDQNLNVKYASIDAFG 965 (1188)
Q Consensus 890 -~~Lg~~e~~~~~iLpiL~~lv~D~~-pnVR~naak~L~~L~~~ig~~~--ls~~VlPaLv~LasD~d~dVR~aaieAl~ 965 (1188)
+.+ +....+.+.|.+.+++...+ -.-|..+|.-...|+..+|.+. .+..++-++....+|.+-.||-+...|++
T Consensus 1225 i~~i--D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1225 INYI--DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMG 1302 (1702)
T ss_pred HHhh--hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHH
Confidence 221 45566778888888886554 4557777777777777776653 46678888999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHH
Q 001018 966 AVAQHFKNDMIVDKIRVQMDAFLEDG--SHEATVAVVRALA 1004 (1188)
Q Consensus 966 ~LA~~l~~e~~~ekl~~~~~slL~D~--~~~vR~~vv~al~ 1004 (1188)
.|+....++.+..-+...+.-++++. .+.++..++..++
T Consensus 1303 ~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ia 1343 (1702)
T KOG0915|consen 1303 YLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIA 1343 (1702)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHH
Confidence 99988887666544444444445543 3355555544433
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.71 E-value=0.014 Score=70.67 Aligned_cols=134 Identities=17% Similarity=0.128 Sum_probs=104.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcC
Q 001018 512 KRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVED 591 (1188)
Q Consensus 512 Kdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD 591 (1188)
=|||++.|-+--+-+..++...|-....+-+=| =++++.+=||=.++-+.|.++..+|-+. ++|.|+.+|.-
T Consensus 256 ided~~~r~~g~eii~nL~~~~Gl~~~vs~mrp----Di~~~deYVRnvt~ra~~vva~algv~~----llpfl~a~c~S 327 (975)
T COG5181 256 IDEDLKRRCMGREIILNLVYRCGLGFSVSSMRP----DITSKDEYVRNVTGRAVGVVADALGVEE----LLPFLEALCGS 327 (975)
T ss_pred cCccHHHhcccHHHHHHHHHHhccceeeeeccC----CcccccHHHHHHHHHHHHHHHHhhCcHH----HHHHHHHHhcC
Confidence 468888886665556666666665555444444 4677888899999999999999998654 79999999887
Q ss_pred C-cHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccch
Q 001018 592 S-ATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKL 654 (1188)
Q Consensus 592 ~-e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~ 654 (1188)
+ +|.-|..-++....||..++-.. ....+..++..++.|.+.-||-.++..+ ..+++.....
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~al-S~lae~~~Py 392 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANAL-SYLAELVGPY 392 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHH-HHHHHhcCCc
Confidence 6 99999999999999999987653 2345788889999999999998887777 6677665443
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.70 E-value=0.001 Score=72.62 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=110.1
Q ss_pred hhHHhHhhHHHHHhhcCCC----hhhHH---HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh--hHhhHHHHHHH
Q 001018 478 NHREELLPLIMCAIERHPD----TSTRD---SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR--TEMELLPQCWE 548 (1188)
Q Consensus 478 ~~R~ellPli~~aa~~h~~----~~~R~---~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er--t~~ELLP~l~e 548 (1188)
+.|.+-+--+.+.+..+.. +..-. +++..+...++|.-..+-+.++.-+..++..+|... .-..++|.+.+
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4555555555555444411 11112 222566667777777788888888999999998752 34568898888
Q ss_pred HhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC--ch-----hhhhHH
Q 001018 549 QINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN--TD-----KYFKVE 621 (1188)
Q Consensus 549 li~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~--~d-----~~~qi~ 621 (1188)
.+.|.-.-+|-.+.+++..+..+++ ....++++.+...+.+++|.||..++..+..+....+. .. .+.++.
T Consensus 102 ~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~ 179 (228)
T PF12348_consen 102 KLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLV 179 (228)
T ss_dssp GGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHH
Confidence 8887777899999999999999887 12234588899999999999999999999999999881 11 246799
Q ss_pred HHHHHhccCCChhHHHHHHHhh
Q 001018 622 DLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 622 ~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+.+..++.|+.++||.+|...|
T Consensus 180 ~~l~~~l~D~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 180 KALVKLLSDADPEVREAARECL 201 (228)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999998887
No 38
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=97.68 E-value=0.0084 Score=74.25 Aligned_cols=232 Identities=16% Similarity=0.168 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCC
Q 001018 776 RNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPS 855 (1188)
Q Consensus 776 R~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~ 855 (1188)
...+.+.|.++-+.|-.-.-..+++|.+...+.+...+.+ ++|.++.
T Consensus 290 Ks~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~--------------------------~LP~v~~------- 336 (700)
T KOG2137|consen 290 KSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPI--------------------------VLPLVLL------- 336 (700)
T ss_pred HHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccccccc--------------------------ccchhhh-------
Confidence 4667777888888888888888899999999866543211 1221110
Q ss_pred cchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhch
Q 001018 856 KHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVV-SSNIDMKINAANLLKVIVPYINA 934 (1188)
Q Consensus 856 ~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~-D~~pnVR~naak~L~~L~~~ig~ 934 (1188)
++.+ ........+++|++..... -..-.+++.+.+++..|.+....
T Consensus 337 ---------------i~~~------------------~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~ 383 (700)
T KOG2137|consen 337 ---------------IAEG------------------LSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP 383 (700)
T ss_pred ---------------hhhc------------------cchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh
Confidence 0000 0112223445555555554 44456777777777777777777
Q ss_pred hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHhcccCCHH
Q 001018 935 KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAF-LEDGSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 935 ~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~sl-L~D~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
+-+.++|+|.|..=-+|.+..+.-.++..++.+++.+..-++.+.|+|-+..+ +.-.+.-++++|+-+++.++..++..
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 77778888877777778888888888888888887777767777777777774 44556777888888888888777665
Q ss_pred HHH-HHHHHHHHhhc-CCCCChhhHHHHHHHHHHHHHHHhhccc-cCchhhhhhhHHHHHHHHHhccCCCChHH
Q 001018 1014 LRD-YLLSKIFQLSA-VPSSSSDVMRRRERANAFCESIRALDAT-ELSATSVRDFLLPAIQNLLKDADSLDPAH 1084 (1188)
Q Consensus 1014 ~r~-~IlP~L~~L~~-vpN~~~~~~~R~~vAk~l~~a~~aL~~~-~l~~~~v~~~ilP~L~~L~~D~d~l~~~~ 1084 (1188)
.+- .++|++..+.. -|-+ ...+..+|.++..- +.+.+++..+++|-+--|.. .++|.=+|
T Consensus 464 ~v~d~~lpi~~~~~~~dp~i----------v~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~-~~~L~~~Q 526 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAI----------VMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV-APSLNGEQ 526 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHH----------HHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh-cccccHHH
Confidence 544 55555544321 2222 22223333333211 11145666677777766655 33344333
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.62 E-value=0.00044 Score=63.72 Aligned_cols=85 Identities=28% Similarity=0.373 Sum_probs=62.8
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHH
Q 001018 505 HTLFNLI-KRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILS 583 (1188)
Q Consensus 505 ~ll~nLi-Kdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~ 583 (1188)
..|++.+ +++++.+|..++..++.+ |. .+.+|.+.++.+|+++.||..++.++|.++. .-.++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----GD----PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 3456656 899999999988877732 32 3678888888899999999999999998741 22466
Q ss_pred HHHHh-hcCCcHHHHHHHHHHHH
Q 001018 584 IVQQL-VEDSATVVREAAARNLA 605 (1188)
Q Consensus 584 ~LqqL-~eD~e~~VR~aAAksL~ 605 (1188)
.|.++ ..|+++.||.+|+.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 67774 45567888999998875
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.53 E-value=0.00033 Score=67.45 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=55.8
Q ss_pred hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHH
Q 001018 575 EIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETT 639 (1188)
Q Consensus 575 e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa 639 (1188)
..+-..|++++.....|.+|+||++|.++|..++....++. .++++++.+..++.|+.+.||.+|
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 34556688899999999999999999999999998887654 467889999999999999999988
No 41
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.02 Score=69.96 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=70.9
Q ss_pred chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc-
Q 001018 894 TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK- 972 (1188)
Q Consensus 894 ~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~- 972 (1188)
.........+..|.+|.+|+...||+-++..|..|+..+ .+....+|.+..-..|...+||.+.-+-+.. +....
T Consensus 403 ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvRe~l~elL~~-~~~~d~ 478 (823)
T KOG2259|consen 403 SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL---AIREEQLRQILESLEDRSVDVREALRELLKN-ARVSDL 478 (823)
T ss_pred CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCcH
Confidence 346667889999999999999999999999999999884 5667788999999999999999988776652 22112
Q ss_pred --hHHHHHHHHHHHHHHhcCC
Q 001018 973 --NDMIVDKIRVQMDAFLEDG 991 (1188)
Q Consensus 973 --~e~~~ekl~~~~~slL~D~ 991 (1188)
-++.+.+++.-+..+=.|.
T Consensus 479 ~~i~m~v~~lL~~L~kyPqDr 499 (823)
T KOG2259|consen 479 ECIDMCVAHLLKNLGKYPQDR 499 (823)
T ss_pred HHHHHHHHHHHHHhhhCCCCc
Confidence 2344455555555555554
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.30 E-value=0.0013 Score=63.13 Aligned_cols=108 Identities=19% Similarity=0.115 Sum_probs=90.9
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc--hH
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK--ND 974 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~--~e 974 (1188)
..++|.+.+++.|..+.+|.+++..|..++.. .-...+...++|.+..+.+|++.+||..++.++..++.... .+
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 45889999999999999999999999999854 34456667999999999999999999999999999987542 22
Q ss_pred HHH-HHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 975 MIV-DKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 975 ~~~-ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
.+. ..+.+.+..++.+.+..++-.++.+|..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 333 447889999999999999999999988764
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.15 E-value=0.0023 Score=61.64 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhCc--hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhh--hhhhhHHHHHHhhcCCc
Q 001018 518 QRRIIMDACVTLAKNVGE--MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEI--RDSLILSIVQQLVEDSA 593 (1188)
Q Consensus 518 vRr~aa~~l~~iA~~lg~--ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~--r~slLL~~LqqL~eD~e 593 (1188)
.|...+-++.++|..+|. ...-.+|+|.+....+|..++||+.+.|++..+++..+++. +-..+...|-+++.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 478888899999998886 44456688888899999999999999999999999887764 34557888899999999
Q ss_pred HHHHHHH
Q 001018 594 TVVREAA 600 (1188)
Q Consensus 594 ~~VR~aA 600 (1188)
+.||.+|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9999887
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.017 Score=70.18 Aligned_cols=331 Identities=15% Similarity=0.172 Sum_probs=202.0
Q ss_pred HhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcc
Q 001018 754 HVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQ---FGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPR 830 (1188)
Q Consensus 754 ~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~---fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~r 830 (1188)
..-++|.+++..+ .+.+-.++..+|-.+..+|.. --+-+...--+|+|..++..+.+. +|.-+.=.+.++.-+
T Consensus 107 ~~G~v~~lV~~l~--~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~--v~eQavWALgNIagd 182 (514)
T KOG0166|consen 107 QSGVVPRLVEFLS--RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSAD--VREQAVWALGNIAGD 182 (514)
T ss_pred HcCcHHHHHHHHc--cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHH--HHHHHHHHHhccccC
Confidence 3458999999863 466678899999999999864 222233344689999999776421 133222222233222
Q ss_pred hhHhhhhh-hhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhc------hhhHHHhHH
Q 001018 831 TAVGERLA-TMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCT------FEEHHTMVF 903 (1188)
Q Consensus 831 taig~~l~-~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~------~e~~~~~iL 903 (1188)
+..-.+.. ....++-++.-+.+ . .. ...++.+ .-++.-||. .-.....+|
T Consensus 183 s~~~Rd~vl~~g~l~pLl~~l~~-~-~~---~~~lRn~------------------tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 183 SPDCRDYVLSCGALDPLLRLLNK-S-DK---LSMLRNA------------------TWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred ChHHHHHHHhhcchHHHHHHhcc-c-cc---hHHHHHH------------------HHHHHHHHcCCCCCCcHHHHHHHH
Confidence 11111111 11112211110000 0 00 0111111 223355663 125678899
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhch---hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh---hchHHHH
Q 001018 904 NILWEMVVSSNIDMKINAANLLKVIVPYINA---KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH---FKNDMIV 977 (1188)
Q Consensus 904 piL~~lv~D~~pnVR~naak~L~~L~~~ig~---~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~---l~~e~~~ 977 (1188)
|+|..++++..++|.-.+.-.+.-|+..-.. -.+...++|.|+.|...+...|+..++.++|-+++- ..+..+.
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 9999999999999999988888877755332 367788999999999999999999999999987753 2233455
Q ss_pred HHHHHHHHHHhc-CCChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHh-
Q 001018 978 DKIRVQMDAFLE-DGSHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRA- 1051 (1188)
Q Consensus 978 ekl~~~~~slL~-D~~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~a- 1051 (1188)
-...|.+..++. -+...++-+++-+++-|+..... .+++ -++|.|..+...--+ .-|+|.|-++..+...
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef----~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEF----DIRKEAAWAISNLTSSG 395 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccch----HHHHHHHHHHHhhcccC
Confidence 778899999988 55667999999999999876654 3455 699999888763333 2355665444332110
Q ss_pred --------------------hccccCchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHhhccCCch---------hh
Q 001018 1052 --------------------LDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTL---------ET 1102 (1188)
Q Consensus 1052 --------------------L~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~ke~~~~~~---------~~ 1102 (1188)
|.| ...-+-..+|-+|.++++-.++....+.+.+..||-|.+|=.+ ++
T Consensus 396 ~~~qi~yLv~~giI~plcdlL~~---~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~ 472 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLLTC---PDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEE 472 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcccC---CChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHH
Confidence 111 1122345566777777664444433222677777777776333 33
Q ss_pred hhhhhhhhccccccccccccCC
Q 001018 1103 ISKVMGAHLGITSSVTSFFGGG 1124 (1188)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~ 1124 (1188)
|.|. .-+=+-+||++.
T Consensus 473 Iy~~------A~~II~~yf~~e 488 (514)
T KOG0166|consen 473 IYKK------AYKIIDTYFSEE 488 (514)
T ss_pred HHHH------HHHHHHHhcCCC
Confidence 4332 223455788876
No 45
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.98 E-value=0.0048 Score=76.33 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=139.1
Q ss_pred hHHHhHHHHHHHhhcCCC--hhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHHhhch
Q 001018 897 EHHTMVFNILWEMVVSSN--IDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 897 ~~~~~iLpiL~~lv~D~~--pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.+...+||.|.+.+.++. |.|-= +...|++..+..-....++|+|....+ --.-+++.++++-+..|.+-+..
T Consensus 308 v~~~kiLP~L~~el~n~~~vp~~LP----~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~ 383 (700)
T KOG2137|consen 308 VLFQKILPTLVAELVNTKMVPIVLP----LVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP 383 (700)
T ss_pred HHHHhhhhHHHHHhccccccccccc----hhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh
Confidence 344667777776664331 11111 112344445555667889999998777 55678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhc-CCCCChhhHHHHHHHHHHHHHHHh
Q 001018 974 DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSA-VPSSSSDVMRRRERANAFCESIRA 1051 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~-vpN~~~~~~~R~~vAk~l~~a~~a 1051 (1188)
++|.++|.|.+-.-++|....+.-.+++.+..+...+|-.++. .|+|.|..++. ..|. ..|-|+.-++..++..
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~----~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL----YVKVNVLPCLAGLIQR 459 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch----HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 99999999965 3332 3466888888888877
Q ss_pred hccccCchhhhhhhHHHHHHHHH-hccCCCChHHHHHHHHHHhhccC
Q 001018 1052 LDATELSATSVRDFLLPAIQNLL-KDADSLDPAHKEALEIIMKDRSG 1097 (1188)
Q Consensus 1052 L~~~~l~~~~v~~~ilP~L~~L~-~D~d~l~~~~k~~l~~i~ke~~~ 1097 (1188)
++.. .|.+.++|-++|-. .|++-..-.-+-.-..+++.++|
T Consensus 460 lD~~-----~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g 501 (700)
T KOG2137|consen 460 LDKA-----AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG 501 (700)
T ss_pred HHHH-----HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc
Confidence 7744 67778999999974 44444433444444445566665
No 46
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.94 E-value=0.00074 Score=51.31 Aligned_cols=30 Identities=37% Similarity=0.638 Sum_probs=23.6
Q ss_pred hhhHHHhhccCCCcchHHHHHHHHHHHHHh
Q 001018 941 VLPALVTLGSDQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 941 VlPaLv~LasD~d~dVR~aaieAl~~LA~~ 970 (1188)
|+|.+.++.+|++|+||.+++.+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578888888888888888888888888765
No 47
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.93 E-value=0.001 Score=50.55 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=24.8
Q ss_pred hHHHHHHhhcCCcHHHHHHHHHHHHhhccc
Q 001018 581 ILSIVQQLVEDSATVVREAAARNLALLLPL 610 (1188)
Q Consensus 581 LL~~LqqL~eD~e~~VR~aAAksL~~l~~~ 610 (1188)
|+|.+.++++|++|+||++|+..|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578888899999999999999999888764
No 48
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=1.1 Score=55.69 Aligned_cols=92 Identities=17% Similarity=0.014 Sum_probs=59.6
Q ss_pred HhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc--------hhhhhH
Q 001018 549 QINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT--------DKYFKV 620 (1188)
Q Consensus 549 li~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~--------d~~~qi 620 (1188)
+.+|...+||-.+++.+-.|.+ |-...+.+ -.-...++.|+..-||.+|++-+-..++..+.+ ..+...
T Consensus 206 ~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~-Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEGLLALSE--GFKLSKAC-YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HhcCCCcchHHHHHHHHHhhcc--cccccHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 3455556678888888877776 33332222 333455778888889999888877777776321 123333
Q ss_pred HHHHHHhccCCChhHHHHHHHhh
Q 001018 621 EDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 621 ~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+--.-..++|-+-.||--|++.|
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~l 305 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKAL 305 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHh
Confidence 44444567899999998887766
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.60 E-value=0.88 Score=52.65 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCc
Q 001018 769 PEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDN 810 (1188)
Q Consensus 769 ~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~ 810 (1188)
.|..+.||.+++..+..+...- ..+.+.|...+.|.
T Consensus 190 ~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~ 225 (335)
T COG1413 190 EDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDE 225 (335)
T ss_pred hCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCC
Confidence 6777788888888877765543 55667777777775
No 50
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.54 E-value=0.0038 Score=76.89 Aligned_cols=166 Identities=18% Similarity=0.150 Sum_probs=145.7
Q ss_pred hhHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhH
Q 001018 478 NHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEER 557 (1188)
Q Consensus 478 ~~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEV 557 (1188)
.-|--|+--+..-+..-+.....+.+...+..-++|-++..|-..++.+..+|..|++...-.||+-++.....|++...
T Consensus 345 ~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~i 424 (690)
T KOG1243|consen 345 QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGI 424 (690)
T ss_pred HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcc
Confidence 34555555444445555556788899999999999999999999999999999999999889999999988777999999
Q ss_pred HHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHH
Q 001018 558 RLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVE 637 (1188)
Q Consensus 558 RlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~ 637 (1188)
|--..-++|++++|+.+..|...+...+-.-.+|.=.-=|.|.+.-|...+++++..++-++|.|.+..+..|++..||.
T Consensus 425 rtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~ 504 (690)
T KOG1243|consen 425 RTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRD 504 (690)
T ss_pred cccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhh
Confidence 99999999999999988889998888888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 001018 638 TTFKEL 643 (1188)
Q Consensus 638 aa~~~L 643 (1188)
.|-+.+
T Consensus 505 ~a~~~i 510 (690)
T KOG1243|consen 505 TAEKAI 510 (690)
T ss_pred HHHHHH
Confidence 885443
No 51
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.53 E-value=0.051 Score=66.93 Aligned_cols=127 Identities=16% Similarity=0.080 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc--hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh
Q 001018 497 TSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE--MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 497 ~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~--ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~ 574 (1188)
++-.++-++-+++||.|+|..+|..|++++..|++.-+. .++.+ +|-| +..-++...+-+|=.++..|...=
T Consensus 54 P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD-vL~Q---lL~tdd~~E~~~v~~sL~~ll~~d-- 127 (556)
T PF05918_consen 54 PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD-VLVQ---LLQTDDPVELDAVKNSLMSLLKQD-- 127 (556)
T ss_dssp GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH-HHHH---HTT---HHHHHHHHHHHHHHHHH---
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH-HHHH---HHhcccHHHHHHHHHHHHHHHhcC--
Confidence 557888999999999999999999999999999986432 23322 2322 333344445556666766665432
Q ss_pred hhhhhhhHHHHHHhh--cCCcHHHHHHHHHHHHhhcccCCCch------hhhhHHHHHHHhccCC
Q 001018 575 EIRDSLILSIVQQLV--EDSATVVREAAARNLALLLPLFPNTD------KYFKVEDLMFQLVCDP 631 (1188)
Q Consensus 575 e~r~slLL~~LqqL~--eD~e~~VR~aAAksL~~l~~~l~~~d------~~~qi~~~f~~Ll~D~ 631 (1188)
-...|-.++.++. +..+..||+.+.+=|..-...++.+. .-..+...+..++.|-
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDV 190 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT-
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhc
Confidence 1223455666654 23345699998887755444444332 2334566666777773
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.52 E-value=0.017 Score=55.38 Aligned_cols=110 Identities=17% Similarity=0.071 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh---CchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh--
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNV---GEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP-- 574 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~l---g~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~-- 574 (1188)
+..+++.+..+++++++.+|..++..+..++... .........+|.+-++++|+.++++..++..++.|+..-+.
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 4446778888999999999999999999998752 23444558999999999988899999999999988864322
Q ss_pred -hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcc
Q 001018 575 -EIRDSLILSIVQQLVEDSATVVREAAARNLALLLP 609 (1188)
Q Consensus 575 -e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~ 609 (1188)
.....-+++.+..+..+....||+.+...|..+++
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 12223368899998889999999999988887763
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.48 E-value=0.034 Score=59.06 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChh
Q 001018 915 IDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHE 994 (1188)
Q Consensus 915 pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~ 994 (1188)
|.||.|++..+.-++-..+ .+-....|.+....+|+++.||..++-.+..|... +.--+..++...+...+.|++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 4555555555555544442 22234455555555555555555555555554432 11111233333444445555555
Q ss_pred HHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhc
Q 001018 995 ATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 995 vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~ 1027 (1188)
||-.+...|..+...-+++.+. .+...+..+..
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 5555555555555544444444 34444444443
No 54
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.41 E-value=1.7 Score=55.79 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhHHH-hhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCh
Q 001018 915 IDMKINAANLLKVIVPYINAKVTSMQVLPALV-TLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSH 993 (1188)
Q Consensus 915 pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv-~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~ 993 (1188)
+-||-..+-+|.+|. +-.+-+....+|.++ +|-...+.-||-.++-|++-++.+... -.++-.|.+..-|.|+..
T Consensus 945 ~~vra~~vvTlakmc--Lah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMC--LAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchH
Confidence 345666666666664 444567788999998 488888999999999999988876542 347888999999999999
Q ss_pred hHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhc-CCCC
Q 001018 994 EATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSA-VPSS 1031 (1188)
Q Consensus 994 ~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~-vpN~ 1031 (1188)
.||-.++--+++|..-=-.+|+- -++-++..+.. .|-+
T Consensus 1021 iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edI 1060 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDI 1060 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHH
Confidence 99999999999998655556666 45556666554 3444
No 55
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.35 E-value=7.2 Score=52.79 Aligned_cols=146 Identities=14% Similarity=0.171 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhh
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDS 579 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~s 579 (1188)
=|..+.+..-.+..+.+.+|--|++.+..|+..=+.-.++.++.-.+..-..|..-+||=.+.|-.|.+.-+-. .
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~-----e 888 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP-----E 888 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-----H
Confidence 35566677777789999999999999888887544444444444455555677899999999999998775432 3
Q ss_pred hhHHHHHHhhc---CCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccc
Q 001018 580 LILSIVQQLVE---DSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSK 653 (1188)
Q Consensus 580 lLL~~LqqL~e---D~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~ 653 (1188)
++...+.++++ |....||.-|.+-+..+|...|+=.+...+.--++.=++|.++.|...+.+.| +..|...
T Consensus 889 ~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf---~klWF~p 962 (1692)
T KOG1020|consen 889 LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETF---LKLWFTP 962 (1692)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHH---HHHhccC
Confidence 34555666655 99999999999999999999988655555555556667799998988887776 5667543
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.21 E-value=0.039 Score=66.16 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=89.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHH
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILS 583 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~ 583 (1188)
+..+...+.|+++.||..++++|+. ++.......|++ .++|++..||..+++.|+....- -.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~~~L~~----~L~~~~p~vR~aal~al~~r~~~---------~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAEPWLEP----LLAASEPPGRAIGLAALGAHRHD---------PGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHHHHHHH----HhcCCChHHHHHHHHHHHhhccC---------hHH
Confidence 6677777889999999999999875 466666666666 45788999999999999883211 134
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 584 IVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 584 ~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.+..+.+|+++.||..|++.|+.+... ...+.+...+.|.++.||.+|+.-+
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHH
Confidence 566777899999999999999987642 3455566789999999999997665
No 57
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=5 Score=49.41 Aligned_cols=370 Identities=14% Similarity=0.143 Sum_probs=205.8
Q ss_pred HHHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh---hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhh
Q 001018 501 DSLTH-TLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR---TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEI 576 (1188)
Q Consensus 501 ~~Ll~-ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er---t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~ 576 (1188)
++++. +.-+....++.-.|+...-|+.+.|-.+|.+. ++.-+.| ......|....||+.+.|++-.+++...++.
T Consensus 41 ~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P-v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v 119 (675)
T KOG0212|consen 41 RKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP-VLNCFSDQDSQVRYYACESLYNIAKVAKGEV 119 (675)
T ss_pred HHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH-HHHhccCccceeeeHhHHHHHHHHHHhccCc
Confidence 34444 66677788998899988889999999999876 6655666 4445677888999999999999999987763
Q ss_pred --hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchh----hhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhc
Q 001018 577 --RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDK----YFKVEDLMFQLVCDPSGVVVETTFKELLPAVINW 650 (1188)
Q Consensus 577 --r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~----~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~ 650 (1188)
+-..+...+..+..|.+..||.+ |+-+..+......+.. ...++|++..=+++..+.+|..-++.+ ..+-.
T Consensus 120 ~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl-~~Lds- 196 (675)
T KOG0212|consen 120 LVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWL-YVLDS- 196 (675)
T ss_pred ccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHhc-
Confidence 44557888899999999999976 4566666655443322 234555555556667888887766554 11111
Q ss_pred ccchH--HHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCc
Q 001018 651 GSKLD--HILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSE 728 (1188)
Q Consensus 651 ~~~~~--~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ 728 (1188)
.++.+ ..++.+++-|.. -+++ .+--||. +-...+..++.. +++.|-.-+
T Consensus 197 ~P~~~m~~yl~~~ldGLf~--------------------~LsD-~s~eVr~---~~~t~l~~fL~e-I~s~P~s~d---- 247 (675)
T KOG0212|consen 197 VPDLEMISYLPSLLDGLFN--------------------MLSD-SSDEVRT---LTDTLLSEFLAE-IRSSPSSMD---- 247 (675)
T ss_pred CCcHHHHhcchHHHHHHHH--------------------HhcC-CcHHHHH---HHHHHHHHHHHH-HhcCccccC----
Confidence 01111 111112221111 1111 1111221 222222222222 212221000
Q ss_pred ccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhC
Q 001018 729 ETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVG 808 (1188)
Q Consensus 729 evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~ 808 (1188)
. ...+|.++.=+ .-+.--++.-+..-+.++.+.+|.++.-.
T Consensus 248 ---~----------------------~~~i~vlv~~l---~ss~~~iq~~al~Wi~efV~i~g~~~l~~----------- 288 (675)
T KOG0212|consen 248 ---Y----------------------DDMINVLVPHL---QSSEPEIQLKALTWIQEFVKIPGRDLLLY----------- 288 (675)
T ss_pred ---c----------------------ccchhhccccc---cCCcHHHHHHHHHHHHHHhcCCCcchhhh-----------
Confidence 0 00111111100 11122222222333334444444332111
Q ss_pred CccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhh-hHHHHHHHhhcccccccccchhhhHHH
Q 001018 809 DNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQL-ADYLRKLLVEGTMKENHTVKCNAEIVN 887 (1188)
Q Consensus 809 D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l-~nyL~rLt~~~s~~~~W~v~~~p~ll~ 887 (1188)
++.++.++|||.++.++. .....+++.. ++.
T Consensus 289 ----------------------------------~s~il~~iLpc~s~~e~~~i~~~a~~~n~--------------~l~ 320 (675)
T KOG0212|consen 289 ----------------------------------LSGILTAILPCLSDTEEMSIKEYAQMVNG--------------LLL 320 (675)
T ss_pred ----------------------------------hhhhhhhcccCCCCCccccHHHHHHHHHH--------------HHH
Confidence 234566777776544432 1122222220 011
Q ss_pred HH---HhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh--hhhhhhHHHhhccCCCcchHHHHHH
Q 001018 888 AV---RFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT--SMQVLPALVTLGSDQNLNVKYASID 962 (1188)
Q Consensus 888 ai---~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l--s~~VlPaLv~LasD~d~dVR~aaie 962 (1188)
.+ ..+ +.+.-...++.++...+.|.+-.-|+++.+=+.-+-...+.+.+ ...|.|.|..=.+|+.-.|-.-+.+
T Consensus 321 ~l~s~~~~-~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 321 KLVSSERL-KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred HHHhhhhh-ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 11 112 12333357899999999999999999999988888877777654 5778888888888888888777777
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhcCC
Q 001018 963 AFGAVAQHFKNDMIVDKIRVQMDAFLEDG 991 (1188)
Q Consensus 963 Al~~LA~~l~~e~~~ekl~~~~~slL~D~ 991 (1188)
-+..++..-..--...-+...+..|.+|+
T Consensus 400 lla~i~~s~~~~~~~~fl~sLL~~f~e~~ 428 (675)
T KOG0212|consen 400 LLASICSSSNSPNLRKFLLSLLEMFKEDT 428 (675)
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHhhhh
Confidence 77666653222122333455556677776
No 58
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.94 Score=55.53 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=69.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHH-hCc---hhhHhhHHHHHHHHh-hcCchhHHHHHHHHHHHHHhhhCh---hh
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKN-VGE---MRTEMELLPQCWEQI-NHMYEERRLLVAQSCGELAEFVRP---EI 576 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~-lg~---ert~~ELLP~l~eli-~Dd~dEVRlLvAescg~La~~vg~---e~ 576 (1188)
......+..++++.+..+...+-.+... --| +....-++|-+-+.. .++.+.+++.+|=++..+|.--.. ..
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3333444444555555444443333221 111 233445777776655 467799999999999888853211 11
Q ss_pred hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC
Q 001018 577 RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN 613 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~ 613 (1188)
-.+--+|+|.+|....+..||+-|+=.|+.|+..-+.
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 1233589999999999999999999999999876543
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.17 E-value=5.1 Score=49.34 Aligned_cols=507 Identities=14% Similarity=0.104 Sum_probs=258.3
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCch-hHHHHHHHHHHHHHhhhCh
Q 001018 496 DTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYE-ERRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 496 ~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~d-EVRlLvAescg~La~~vg~ 574 (1188)
..+.|..+-.+...-++.+.|.-=.+|+..+++||..-=|.-.+-+|+-.+..-..|.|+ .+.-.....||...+...|
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P 167 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP 167 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH
Confidence 345778888888888999999999999999999999777777777777766665665554 4555666777877776666
Q ss_pred h----hhhhhhHHHHHH-hhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCC----ChhHHHHHHHhhHH
Q 001018 575 E----IRDSLILSIVQQ-LVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDP----SGVVVETTFKELLP 645 (1188)
Q Consensus 575 e----~r~slLL~~Lqq-L~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~----s~~Vr~aa~~~Llp 645 (1188)
+ .....+..+..- +-+..+..||-++.+.|..=+..+-..-.|..=..+|++.++|- ..+|-.++-..|..
T Consensus 168 e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~k 247 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNK 247 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHH
Confidence 3 222223444443 56677889999999888773333322223334456677766654 66677666555411
Q ss_pred HHHhcc-cchHHHHHHHHHHHhhhhccCCCc----cccc--hh-hhhhh---------hhhhhhhhhhHHHHHHHHHHHH
Q 001018 646 AVINWG-SKLDHILRVLLSYILSSAQRCPPL----SGVE--GS-VESHL---------RVLGERERWNLEVLLRMMAELL 708 (1188)
Q Consensus 646 ala~~~-~~~~~ll~~ll~~L~~~v~~lp~~----~~v~--~~-la~~l---------~~Lg~d~sWrV~~~l~~l~~LL 708 (1188)
+..+. +-..-...+.+..+....-.-+.+ ++|+ +. .+..+ +..+-+.. ..-...+.+++
T Consensus 248 -im~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~---~fa~aav~dvl 323 (858)
T COG5215 248 -IMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH---GFARAAVADVL 323 (858)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc---chHHHHHHHHH
Confidence 11110 000111111111111000011111 1111 00 00000 11111110 01123678899
Q ss_pred HHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhc-cCCCCcHHHHHHHHHHHHHHH
Q 001018 709 PFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLAC-LLPEKEDNLRNRITKFLLAVS 787 (1188)
Q Consensus 709 P~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~-~~~D~sWrVR~Aia~~l~~La 787 (1188)
|.++.++....|-.-+|.=....-+.+-+++|.. ...++++-.+..... .+...+|+=|.+.+-.|..+-
T Consensus 324 P~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---------~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm 394 (858)
T COG5215 324 PELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---------LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---------HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence 9888877643321111110111112455666642 123333322222221 258899999999988777665
Q ss_pred HhhCHHHH---HHHHHHHHHHHhCCccccccCCccccccccCCCcchhHh-hhhh-------hhch-hh----HHhhhhc
Q 001018 788 KQFGDSYL---THIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVG-ERLA-------TMGV-LP----LLLAGVL 851 (1188)
Q Consensus 788 ~~fG~e~t---~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig-~~l~-------~~~l-LP----~il~gVL 851 (1188)
..=.++-. ....+|....++.|.+-.. +.++++. .+++ .-|. +| ..+.|+.
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~v-------------k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWV-------------KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeeh-------------hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Confidence 43322222 3457888888888875210 0133331 1111 1111 11 3334443
Q ss_pred CCCCcchhhhHHHHHH---Hhhccccc----ccccchhhhHHHHH------------------Hhhhc-----hhhH---
Q 001018 852 GAPSKHDQLADYLRKL---LVEGTMKE----NHTVKCNAEIVNAV------------------RFLCT-----FEEH--- 898 (1188)
Q Consensus 852 ~~~~~~~~l~nyL~rL---t~~~s~~~----~W~v~~~p~ll~ai------------------~~Lg~-----~e~~--- 898 (1188)
-++ .+ ..|+-.+. .+.++.-- +.-...-++|++++ ..||. .+.+
T Consensus 462 D~p-~~--~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~ 538 (858)
T COG5215 462 DCP-FR--SINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI 538 (858)
T ss_pred ccc-hH--HhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence 332 10 01111111 10000000 00000000122222 01110 0110
Q ss_pred -----------HHhHHHHHHHhh--cCC--ChhHHHHHHHHHHHHHhhhch--hhhhhhhhhHHHhhccCCCcch-HHHH
Q 001018 899 -----------HTMVFNILWEMV--VSS--NIDMKINAANLLKVIVPYINA--KVTSMQVLPALVTLGSDQNLNV-KYAS 960 (1188)
Q Consensus 899 -----------~~~iLpiL~~lv--~D~--~pnVR~naak~L~~L~~~ig~--~~ls~~VlPaLv~LasD~d~dV-R~aa 960 (1188)
.+.++.++-+.+ .|. +-++-.|.+..|..|+...+. +-++.++.-.+..+.+-.+..+ ---+
T Consensus 539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV 618 (858)
T COG5215 539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDV 618 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHH
Confidence 122222222111 111 345666777777777777665 5566666666665555443322 2233
Q ss_pred HHHHHHHHHhhchHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHhhcCCCC
Q 001018 961 IDAFGAVAQHFKNDM--IVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD---YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 961 ieAl~~LA~~l~~e~--~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L~~vpN~ 1031 (1188)
.-||+.++..++..| ...+..|.+.+-|.-.++-+-..++.-.+.|+..++.+|+- .+...|.++.+.|+-
T Consensus 619 ~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~ 694 (858)
T COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEAT 694 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhh
Confidence 445677777776643 56888999888887778888888888899999999888866 366777777665544
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.91 E-value=0.15 Score=54.22 Aligned_cols=95 Identities=11% Similarity=0.120 Sum_probs=75.6
Q ss_pred chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 894 TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 894 ~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.+..+.+..+|.+..++.|+.|.||-+++..|..+... |.--...+++..+..+..|+|..||-++...|..+....++
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc
Confidence 46778888999999999999999999999999998654 33445567777888888999999999999999999988666
Q ss_pred HHHHHHHHHHHHHHhcC
Q 001018 974 DMIVDKIRVQMDAFLED 990 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~D 990 (1188)
..+.. ..+.+..-+.+
T Consensus 97 ~~i~~-~~~e~i~~l~~ 112 (178)
T PF12717_consen 97 NIIYN-NFPELISSLNN 112 (178)
T ss_pred hHHHH-HHHHHHHHHhC
Confidence 66655 44444444443
No 61
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.80 E-value=0.42 Score=55.50 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=122.2
Q ss_pred hhhHHhHhhHHHHHhhcCCCh----hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC----chhhHhhHHHHHHH
Q 001018 477 INHREELLPLIMCAIERHPDT----STRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVG----EMRTEMELLPQCWE 548 (1188)
Q Consensus 477 ~~~R~ellPli~~aa~~h~~~----~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg----~ert~~ELLP~l~e 548 (1188)
...|+..+.-|..+...|.-. ..+..|+..+..-+|+.....+..+++.++-++-.+| .+..-.++.|.|..
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 668999999888887776633 3477889999999999998888999999999999988 25666679999999
Q ss_pred HhhcCchh--HHHHHHHHHHHHHhhhChhh--hhhhhHHHHHH------hhcCC---------cHHHHHHHHHHHHhhcc
Q 001018 549 QINHMYEE--RRLLVAQSCGELAEFVRPEI--RDSLILSIVQQ------LVEDS---------ATVVREAAARNLALLLP 609 (1188)
Q Consensus 549 li~Dd~dE--VRlLvAescg~La~~vg~e~--r~slLL~~Lqq------L~eD~---------e~~VR~aAAksL~~l~~ 609 (1188)
.+.|.... +|..++.++|. .-|+++.. ....++..++. .-.|. .+.|..+|...-+.|.-
T Consensus 137 ~l~d~s~~~~~R~~~~~aLai-~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 137 ILTDSSASPKARAACLEALAI-CTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHhCCccchHHHHHHHHHHHH-HHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 88887654 45555665555 34554432 22212344441 11222 36799999999999999
Q ss_pred cCCCch---hhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 610 LFPNTD---KYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 610 ~l~~~d---~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.++... .....++.|..+|.-+.-.||.+|.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEai 252 (309)
T PF05004_consen 216 TLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAI 252 (309)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 998743 3345788999999999999999998876
No 62
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.41 E-value=0.88 Score=52.36 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh-----hh-
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP-----EI- 576 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~-----e~- 576 (1188)
+-.+..--++.+++.+|..+++.++-++- ++. +.-.+-++.++..++.+.++||..+..++..+.-.-|. ..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 33455567799999999999988777654 444 44556678788877777999999999999888744332 11
Q ss_pred -----hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhh--cccCCC-chhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHH
Q 001018 577 -----RDSLILSIVQQLVEDSATVVREAAARNLALL--LPLFPN-TDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVI 648 (1188)
Q Consensus 577 -----r~slLL~~LqqL~eD~e~~VR~aAAksL~~l--~~~l~~-~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala 648 (1188)
....++.+|.....+..+.||..|++.|+++ ...+.+ +.....++-.|+.=......++|.+- ..|.|.|+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L-~~Ffp~y~ 184 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCL-SVFFPVYA 184 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHH-HHHHHHHH
Confidence 2345788999988888999999999999994 566777 65566665555543444456777765 45669999
Q ss_pred hccc
Q 001018 649 NWGS 652 (1188)
Q Consensus 649 ~~~~ 652 (1188)
....
T Consensus 185 ~s~~ 188 (298)
T PF12719_consen 185 SSSP 188 (298)
T ss_pred cCCH
Confidence 8654
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=12 Score=47.70 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=91.6
Q ss_pred hhHHHHH-hhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHH
Q 001018 484 LPLIMCA-IERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVA 562 (1188)
Q Consensus 484 lPli~~a-a~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvA 562 (1188)
.-||++- |..+|+. --...+.|..-|+|++|+.|..|++-.+.+ +-.+...-+.-.|....+|++..||-.+|
T Consensus 69 vyLYl~nYa~~~P~~--a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa 142 (734)
T KOG1061|consen 69 VYLYLMNYAKGKPDL--AILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAA 142 (734)
T ss_pred HHHHHHHhhccCchH--HHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHH
Confidence 4444444 4446643 234578899999999999999998765432 33444445555578889999999999999
Q ss_pred HHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC
Q 001018 563 QSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN 613 (1188)
Q Consensus 563 escg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~ 613 (1188)
-++..+-..=+.-.+..-+++.|..|..|..|.|=..|+.+|..|.+.=++
T Consensus 143 ~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 143 VCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 888877644333345556899999999999999999999999999877654
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.19 E-value=0.034 Score=47.31 Aligned_cols=51 Identities=29% Similarity=0.203 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHhhhChh--hhhhhhHHHHHHhhcCCcHHHHHHHHHHHH
Q 001018 555 EERRLLVAQSCGELAEFVRPE--IRDSLILSIVQQLVEDSATVVREAAARNLA 605 (1188)
Q Consensus 555 dEVRlLvAescg~La~~vg~e--~r~slLL~~LqqL~eD~e~~VR~aAAksL~ 605 (1188)
|+||..++-++|.++...+.. .+...++|.|..+.+|.++.||.+|+..|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344555555554443222221 122334555555555555555555555444
No 65
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=12 Score=46.30 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=75.7
Q ss_pred HhHHHHHHHhhcCCCh-hHHHHHHHHHHHHHhhhchhhhh-----hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 900 TMVFNILWEMVVSSNI-DMKINAANLLKVIVPYINAKVTS-----MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~p-nVR~naak~L~~L~~~ig~~~ls-----~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
..|+..++.+..|..+ ++++.+...=..+...++.+... ..++-.+...-+|....-|.++..-+-.|-...+.
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 5577777777777777 68877666554555444443332 46777888888999999999999999988887776
Q ss_pred HHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 974 DMIV--DKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 974 e~~~--ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
+.++ +.+.+++..-|.|++-.+-.-++.-++.++
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 6543 778888888888886555444444444443
No 66
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=94.84 E-value=0.0087 Score=44.38 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHcCCcccceecccc
Q 001018 153 DLNCAVKEYLLLAGYRLTAMTFYEE 177 (1188)
Q Consensus 153 ~LN~lv~eYLl~~~Ykltsitf~dE 177 (1188)
.||.||-+||.++||.=||-+|..|
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 5899999999999999999999877
No 67
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.78 E-value=0.15 Score=64.92 Aligned_cols=144 Identities=15% Similarity=0.264 Sum_probs=105.8
Q ss_pred hhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHH
Q 001018 842 VLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINA 921 (1188)
Q Consensus 842 lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~na 921 (1188)
++|++..++-..+.. .-.+|+.-|.-.++ ++| .. .++. -...++|.+++.+.=+.+.||..+
T Consensus 868 ivP~l~~~~~t~~~~--~K~~yl~~LshVl~--------~vP--~~---vllp---~~~~LlPLLLq~Ls~~D~~v~vst 929 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGS--QKHNYLEALSHVLT--------NVP--KQ---VLLP---QFPMLLPLLLQALSMPDVIVRVST 929 (1030)
T ss_pred hHHHHHHHhccCCcc--chhHHHHHHHHHHh--------cCC--HH---hhcc---chhhHHHHHHHhcCCCccchhhhH
Confidence 378877777643321 22578777765322 444 11 1211 126799999999999999999999
Q ss_pred HHHHHHHHhhhch---hhhhhhhhhHHHhhccCCC---cchHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHhcCCC
Q 001018 922 ANLLKVIVPYINA---KVTSMQVLPALVTLGSDQN---LNVKYASIDAFGAVAQHFKND---MIVDKIRVQMDAFLEDGS 992 (1188)
Q Consensus 922 ak~L~~L~~~ig~---~~ls~~VlPaLv~LasD~d---~dVR~aaieAl~~LA~~l~~e---~~~ekl~~~~~slL~D~~ 992 (1188)
...+..+....+. +-+ ..++|.+..|.+|++ .-||..+++.+++|.+.+-.. -+.++|...+...|+|+-
T Consensus 930 l~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 930 LRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred hhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 8888877554332 333 578999999999999 679999999999999865444 356888888999999999
Q ss_pred hhHHHHHHHHHH
Q 001018 993 HEATVAVVRALA 1004 (1188)
Q Consensus 993 ~~vR~~vv~al~ 1004 (1188)
..+|..++.+=.
T Consensus 1009 RlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 1009 RLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHhh
Confidence 999999988643
No 68
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.76 E-value=15 Score=45.60 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=65.6
Q ss_pred HHHHhhc-CchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc---hhhhhHH
Q 001018 546 CWEQINH-MYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT---DKYFKVE 621 (1188)
Q Consensus 546 l~eli~D-d~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~---d~~~qi~ 621 (1188)
+....++ +.+.+ -++.+.+..+.....+..-..-+.+.|+....-.++.||.-+++.+..+...-+.. .....+.
T Consensus 43 lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQV-ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 4443333 33443 44556666666555554445566888999888899999999999887766433210 1234688
Q ss_pred HHHHHhccCCChhHHHHHHHhh
Q 001018 622 DLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 622 ~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+.+..++.|++..|...|++.+
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L 143 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKAL 143 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHH
Confidence 8889999999999998887666
No 69
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=15 Score=46.58 Aligned_cols=250 Identities=16% Similarity=0.221 Sum_probs=156.2
Q ss_pred hhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccc
Q 001018 735 SLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLT 814 (1188)
Q Consensus 735 ~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~ 814 (1188)
.++.+|-....-...-+|.. .|+.| ++|.+-+|-.|.+..+..|++.-..++-.. +|..++-|.-.+-+.
T Consensus 171 clL~L~r~spDl~~~~~W~~-----riv~L---L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~--~~~avs~L~riv~~~ 240 (938)
T KOG1077|consen 171 CLLRLFRKSPDLVNPGEWAQ-----RIVHL---LDDQHMGVVTAATSLIEALVKKNPESYKTC--LPLAVSRLSRIVVVV 240 (938)
T ss_pred HHHHHHhcCccccChhhHHH-----HHHHH---hCccccceeeehHHHHHHHHHcCCHHHhhh--HHHHHHHHHHHHhhc
Confidence 45556543222222335642 33444 499999999999999999999877776555 344555542221000
Q ss_pred cCCccccccccCCCcchh-----HhhhhhhhchhhHHhhhhcCCCCc---chhhhHHHHHHHhhcccc-cccccchh---
Q 001018 815 FFPSTIHSGIRGLKPRTA-----VGERLATMGVLPLLLAGVLGAPSK---HDQLADYLRKLLVEGTMK-ENHTVKCN--- 882 (1188)
Q Consensus 815 i~R~a~~~~I~~L~~rta-----ig~~l~~~~lLP~il~gVL~~~~~---~~~l~nyL~rLt~~~s~~-~~W~v~~~--- 882 (1188)
- . .+.. +-.-|+...++-++. ..|.+++ +..+.+.+.++..-...+ .+-.|.|.
T Consensus 241 ~--------t----~~qdYTyy~vP~PWL~vKl~rlLq--~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~ 306 (938)
T KOG1077|consen 241 G--------T----SLQDYTYYFVPAPWLQVKLLRLLQ--IYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAK 306 (938)
T ss_pred c--------c----chhhceeecCCChHHHHHHHHHHH--hCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhH
Confidence 0 0 0000 122344444433332 3465533 333667888887755533 11222111
Q ss_pred -hhHHHHHHh---hhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-hchhhhhhhhhhHHHhhccCCCcchH
Q 001018 883 -AEIVNAVRF---LCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPY-INAKVTSMQVLPALVTLGSDQNLNVK 957 (1188)
Q Consensus 883 -p~ll~ai~~---Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~-ig~~~ls~~VlPaLv~LasD~d~dVR 957 (1188)
+-|-.+|.. +-..+.....++.-|.+++.|.-+|+|.-+...+-.++.. +..+.+..+.=-.+..|-.++|..||
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHH
Confidence 112223322 2235677889999999999999999999999998888766 66678888855555567779999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH
Q 001018 958 YASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE 1012 (1188)
Q Consensus 958 ~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~ 1012 (1188)
--+.+-+=+.+-.-+.+.+++.+ .++|..-+|.+|-.++--.+.|+...-.
T Consensus 387 rravDLLY~mcD~~Nak~IV~el----LqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 387 RRAVDLLYAMCDVSNAKQIVAEL----LQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhchhhHHHHHHHH----HHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 99999887777666666665544 4455557889999999888888876644
No 70
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.64 E-value=0.047 Score=46.43 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 001018 954 LNVKYASIDAFGAVAQHFKN--DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVA 1006 (1188)
Q Consensus 954 ~dVR~aaieAl~~LA~~l~~--e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l 1006 (1188)
|.||..+..+|+.+++..+. ..+..++.+.+...|.|++..||-+++.+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 55666666666665544332 234566666666666666666677766666643
No 71
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.64 E-value=0.46 Score=60.56 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=90.3
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHH
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVD 978 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~e 978 (1188)
.-..++.+.+=+.|++|.+|..|++.+..| +...+...++|.|..+.+|++.-||-+|+-|+..+= +++.+.+.+
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~ 164 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHE 164 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhc
Confidence 345678888889999999999999998875 566777899999999999999999999999987665 356666666
Q ss_pred H-HHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 979 K-IRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 979 k-l~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
- ...+...++.|.++.+--+++.++..+-|-
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 5 677777889999999999999999999887
No 72
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.37 Score=61.06 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=115.9
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh----hccCCCcchHHHHHHHHHHHHHhhchH
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT----LGSDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~----LasD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
.+.++.+++++++|..+-|=+|+++.+-.++++- ...|+|-+.+ ...-+..+.|+-+=+||..+++..|+=
T Consensus 766 ~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-----~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel 840 (982)
T KOG4653|consen 766 GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-----PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL 840 (982)
T ss_pred HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-----chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccH
Confidence 3789999999999999999999999998888774 4677888876 222333567777779999999998874
Q ss_pred HH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 001018 975 MI--VDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE---RLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus 975 ~~--~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~---~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
.+ .+.+..+|++...||++..|+..+..++.+...... ++.-.+.-.+..+..+-.. +.-||..+..+.+.+
T Consensus 841 ~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s---~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 841 VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGS---VLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCc---hhhHHHHHHHHHHHH
Confidence 43 368999999999999999999999999988776653 2222344445555443221 122666655555554
Q ss_pred HhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018 1050 RALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus 1050 ~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
..+ ...++|.+|.++.|.+
T Consensus 918 ~~t----------g~dlLpilr~~l~Dl~ 936 (982)
T KOG4653|consen 918 NGT----------GEDLLPILRLLLIDLD 936 (982)
T ss_pred hcc----------chhhHHHHHHHHHHHH
Confidence 422 2467898888777654
No 73
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.33 E-value=2.1 Score=49.30 Aligned_cols=169 Identities=16% Similarity=0.204 Sum_probs=113.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH----
Q 001018 902 VFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV---- 977 (1188)
Q Consensus 902 iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~---- 977 (1188)
+=.++.-.+.++.+.||..+.+.|+.. -.++.+.+.+++.--+..+.+| +..||..+++++--+....|.+.+.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~-~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLC-CLLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 334555778899999999999999965 4677777777755555556455 9999999999998888877765432
Q ss_pred -------HHHHHHHHHHhcCCChhHHHHHHHHHHHhc--ccC-C-HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHH
Q 001018 978 -------DKIRVQMDAFLEDGSHEATVAVVRALAVAV--PHT-T-ERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFC 1046 (1188)
Q Consensus 978 -------ekl~~~~~slL~D~~~~vR~~vv~al~~l~--p~~-~-~~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~ 1046 (1188)
..+...+..++.+.+..++..++.+++++. ..+ + +.+.. .|.-+---|.- .+.. | +-..|-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~----~Lll~yF~p~t-~~~~-~--LrQ~L~ 177 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLS----RLLLLYFNPST-EDNQ-R--LRQCLS 177 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHcCccc-CCcH-H--HHHHHH
Confidence 356777888899889999999999999963 333 3 33333 33222222322 1111 2 333444
Q ss_pred HHHHhhccc-cCchhhhhhhHHHHHHHHHhccCCC
Q 001018 1047 ESIRALDAT-ELSATSVRDFLLPAIQNLLKDADSL 1080 (1188)
Q Consensus 1047 ~a~~aL~~~-~l~~~~v~~~ilP~L~~L~~D~d~l 1080 (1188)
..++...+. .--...+.+.++|+++.+.+..+.+
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~ 212 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAPDEL 212 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 444433322 1234788888999999988877765
No 74
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.31 E-value=1.1 Score=51.98 Aligned_cols=109 Identities=28% Similarity=0.291 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCc------------hhHHHHHHHHHHHHHhhhChhhhhhh
Q 001018 513 RPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMY------------EERRLLVAQSCGELAEFVRPEIRDSL 580 (1188)
Q Consensus 513 dddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~------------dEVRlLvAescg~La~~vg~e~r~sl 580 (1188)
|++..||..++.+|+.+ |.++. +-| +.+..+|+. +.+|..+++.++.+..- .
T Consensus 117 d~~~~vR~~aa~aL~~~----~~~~a---~~~-l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~--------~ 180 (335)
T COG1413 117 DENEGVRAAAARALGKL----GDERA---LDP-LLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP--------E 180 (335)
T ss_pred CCcHhHHHHHHHHHHhc----Cchhh---hHH-HHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh--------h
Confidence 89999999999888775 34443 333 333344444 35788888888876432 1
Q ss_pred hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 581 ILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 581 LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
..+.+..+.+|....||.+|+..|+.+.... ..+.+.|...+.|++..||..++..+
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 2567788999999999999999999988765 36789999999999999999886554
No 75
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.22 E-value=1.3 Score=53.34 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=133.4
Q ss_pred HHHHHHhhhcccchhcchhhHHhHhhHHHHHhhcC-CC--hhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhCc
Q 001018 460 TIQILADALPKIVPYVLINHREELLPLIMCAIERH-PD--TSTRDSLTHTLFNLIKR-PDEKQRRIIMDACVTLAKNVGE 535 (1188)
Q Consensus 460 ~v~lls~~lP~Ivp~V~~~~R~ellPli~~aa~~h-~~--~~~R~~Ll~ll~nLiKd-ddp~vRr~aa~~l~~iA~~lg~ 535 (1188)
....+.+-+-.+..+-...+|++.+-=+....+-. .. ..-.++|+-.+++-+.| .++.-|..|.+-+..+.+.-..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 56677777888888877788888855333222222 11 22356777777777777 9999999999988888765432
Q ss_pred ---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCC
Q 001018 536 ---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFP 612 (1188)
Q Consensus 536 ---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~ 612 (1188)
+.++--+.. +.+...|-+|+|--.++|.|..++.-..|..+-..+-|.++. .|+..- -++++-+.++++-++
T Consensus 364 ~l~DstE~ai~K-~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt--~D~~~~--~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 364 RLFDSTEIAICK-VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT--ADEPRA--VAVIKMLTKLFERLS 438 (516)
T ss_pred hhhchHHHHHHH-HHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc--CcchHH--HHHHHHHHHHHhhcC
Confidence 333333444 345577789999999999998877666667677777777755 444333 367888899999988
Q ss_pred Cch---hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc
Q 001018 613 NTD---KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 613 ~~d---~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~ 651 (1188)
.+. ....|.|.+++.....++.||.+++-.|+..+.+..
T Consensus 439 ~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 439 AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 875 455788999999999999999999887766666554
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.95 E-value=0.23 Score=59.72 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=61.1
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV 977 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ 977 (1188)
-.....+.|..+++|+.|.||.+++..+.... . .-.|.+..+.+|+++.||..++.+++.+...-
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~----~-----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~------ 178 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR----H-----DPGPALEAALTHEDALVRAAALRALGELPRRL------ 178 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc----c-----ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc------
Confidence 34666777788888888888877776555521 1 12345666666888888888888777765321
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
..+.+...+.|.+..||...+.++..++
T Consensus 179 --a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 179 --SESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred --chHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 2222344577888888888888887775
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=16 Score=46.31 Aligned_cols=130 Identities=8% Similarity=0.128 Sum_probs=71.8
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
+......|+.-|-.+..|..||.|.-..-.+.+|.+.-. +.-+.=+-.++....|.|..+|.-+++-+-.+. +.+
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp--~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV---skk 367 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP--KAVQAHKDLILRCLDDKDESIRLRALDLLYGMV---SKK 367 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH--HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh---hhh
Confidence 344556666777777778888888777777777766542 222333555667778888888876666553333 334
Q ss_pred HHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhcccCCHHHHH-H--HHHHHHHhhcCCC
Q 001018 975 MIVDKIRVQMDAFLEDGS-HEATVAVVRALAVAVPHTTERLRD-Y--LLSKIFQLSAVPS 1030 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~~-~~vR~~vv~al~~l~p~~~~~~r~-~--IlP~L~~L~~vpN 1030 (1188)
.+.+=+. .+|..+.+.. -+||...+.-+=.+...-.-.++. | -+..|+.|+.+|.
T Consensus 368 Nl~eIVk-~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~ 426 (877)
T KOG1059|consen 368 NLMEIVK-TLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG 426 (877)
T ss_pred hHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc
Confidence 3333222 2222222222 266666655444444333333333 2 5556666666555
No 78
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.41 E-value=5.2 Score=48.32 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=124.1
Q ss_pred hhHHHHHHhhhcccchhcchhhHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhh---------------------cCCCH
Q 001018 458 LGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLI---------------------KRPDE 516 (1188)
Q Consensus 458 ~~~v~lls~~lP~Ivp~V~~~~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLi---------------------Kdddp 516 (1188)
...+-+++.++..+=|.|....=.+++..+...+....++..|-...+++.-++ ...++
T Consensus 165 ~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~ 244 (415)
T PF12460_consen 165 SRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDS 244 (415)
T ss_pred ccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCc
Confidence 446677777777777776643222344333333333333333333333333333 45567
Q ss_pred HHHHHHHHHHHHHHHHh--CchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh----hChhhhh-----------h
Q 001018 517 KQRRIIMDACVTLAKNV--GEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF----VRPEIRD-----------S 579 (1188)
Q Consensus 517 ~vRr~aa~~l~~iA~~l--g~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~----vg~e~r~-----------s 579 (1188)
..|..+++.+..|++.+ -....-.+++..+-++++| +++...+|.+++-|..- +..+.++ +
T Consensus 245 ~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~ 322 (415)
T PF12460_consen 245 ELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT 322 (415)
T ss_pred chhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH
Confidence 77888999998888754 2334456778888888876 77899999999988733 2221111 3
Q ss_pred hhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchh---hhhHHHHHHHhccCCChhHHHHHHHhhHHHHH
Q 001018 580 LILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDK---YFKVEDLMFQLVCDPSGVVVETTFKELLPAVI 648 (1188)
Q Consensus 580 lLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~---~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala 648 (1188)
.++|.+.+..+.....+|......|..+.+.+|.... ..++.|+.++-+.=++.+|+.++...+...+.
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3678887766666666888989999999999997654 34688888988877788899999888844333
No 79
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.32 Score=60.24 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=88.4
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh----hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPY----INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~----ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
|.+.+.=.-.+.+++.|+.|.||..++..+.++... +....+..-+.-..-+|+.|.-.+||.++.+.++.++..=
T Consensus 215 D~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 215 DSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 334455566788899999999999999988887654 4445554444445558999999999999999999998653
Q ss_pred chHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 972 KNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 972 ~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
-.--+.+.+.|.+.-.+.|++-.||++++.-+.+|-
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 333566889999888999999999999999988875
No 80
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.79 Score=57.41 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhC--chhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVG--EMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg--~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
.+...++.|.||+.|+.-|=.+.- ..+| ......-||++ .++|-.|-||-.++-++|-+. +=.+ +.+.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~al--Ay~GTgnnkair~lLh~---aVsD~nDDVrRaAVialGFVl-~~dp----~~~~ 591 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLAL--AYVGTGNNKAIRRLLHV---AVSDVNDDVRRAAVIALGFVL-FRDP----EQLP 591 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHH--HHhccCchhhHHHhhcc---cccccchHHHHHHHHHheeeE-ecCh----hhch
Confidence 466778999999999975543321 1233 45566667774 467888889998888877432 1112 3356
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHH
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETT 639 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa 639 (1188)
+.++-|++--.+-|||.+|=.|+..|+.-+.. ....++-+|++|+.+-||..|
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgA 644 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGA 644 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHH
Confidence 77888999999999999999999999988877 678888889999999999988
No 81
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=33 Score=44.07 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=65.0
Q ss_pred hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhh
Q 001018 538 TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKY 617 (1188)
Q Consensus 538 t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~ 617 (1188)
..+|+.=-+..+.+++...-|.++=-..++++..- +....+.+.+..-..-+++++|-+|.++|+.|... .-.
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is---edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~----~m~ 133 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS---EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDG----TML 133 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc---hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCc----chh
Confidence 33444433556666677777776655555554332 22334555666667778999999999999887643 234
Q ss_pred hhHHHHHHHhccCCChhHHHHH
Q 001018 618 FKVEDLMFQLVCDPSGVVVETT 639 (1188)
Q Consensus 618 ~qi~~~f~~Ll~D~s~~Vr~aa 639 (1188)
..++.++.+.+-|..+.|+.+|
T Consensus 134 ~~iery~kqaivd~~~avSsaa 155 (865)
T KOG1078|consen 134 QAIERYMKQAIVDKNPAVSSAA 155 (865)
T ss_pred HHHHHHHHhHeeccccccchHH
Confidence 4788999999999999999877
No 82
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.93 E-value=2.6 Score=54.73 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=45.7
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
...+.+.+.+++++.+|-+|--....|.......|. .-....++|.++...+|.+-+||.|+.++++.+...+|.+
T Consensus 369 l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 369 LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 355666666666666666666655555555555542 3334556666666666666666666666666666666654
Q ss_pred HH
Q 001018 975 MI 976 (1188)
Q Consensus 975 ~~ 976 (1188)
.+
T Consensus 449 ~~ 450 (815)
T KOG1820|consen 449 VF 450 (815)
T ss_pred HH
Confidence 44
No 83
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.58 Score=58.13 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=77.2
Q ss_pred HHHHhhcCchhHHHHHHHHHH----HHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHH
Q 001018 546 CWEQINHMYEERRLLVAQSCG----ELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVE 621 (1188)
Q Consensus 546 l~eli~Dd~dEVRlLvAescg----~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~ 621 (1188)
+..+..|++..||--+.+..- .|-..+++.+-..++--++-.++.|....||.++.+.|..++..=-.-....+++
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~L 304 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLL 304 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHH
Confidence 355788999999988776543 3335577777777777777779999999999999999998876544445677888
Q ss_pred HHHHHhccCCChhHHHHHHHhh
Q 001018 622 DLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 622 ~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
|.+-.+++|.+..||-|+++.+
T Consensus 305 pal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 305 PALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred HhcchhhhccchhHHHHHHHHH
Confidence 8888999999999999998876
No 84
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.52 E-value=2.4 Score=53.20 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH----HHHH
Q 001018 906 LWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV----DKIR 981 (1188)
Q Consensus 906 L~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~----ekl~ 981 (1188)
+..++.+..|+||--....|.- ....+.+.+..+ .|.+..-.+-.+.-.++.++++|-..-.++|.+.|. +.+.
T Consensus 544 i~pavrs~~l~iRelglKOGgl-ccLln~dlA~en-~~ill~c~~kg~v~LK~~al~~l~D~fi~fg~e~fk~~~d~~lk 621 (892)
T KOG2025|consen 544 IFPAVRSLVLSIRELGLLCLGL-CCLLNGDLAKEN-DDILLPCSQKGKVALKHRALDDLRDRFIAFGLERFKCTQDDHLK 621 (892)
T ss_pred HHHHHHhcCccHHhhhhhhhhh-hhhcchhhhhhc-CcEEEEeeecCceEEEeehHHHHHHHHHHhccccceechHHHHH
Confidence 3345566678888877777763 333444443332 222333334456677777777775555555544321 3333
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 982 VQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 982 ~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
-.|..+-.+....-..-.+.+++++.
T Consensus 622 i~~~~L~~~~~~E~qtl~aea~cKll 647 (892)
T KOG2025|consen 622 IYCSILFFELFSEDQTLLAEAFCKLL 647 (892)
T ss_pred HHHHHHccccchHHHHHHHHHHHHHH
Confidence 44444444444444444455555543
No 85
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.48 E-value=2.7 Score=47.61 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=91.7
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh-hcc-CCCcchHHHHHHHHHHHHHhhchHHHHH
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT-LGS-DQNLNVKYASIDAFGAVAQHFKNDMIVD 978 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~-Las-D~d~dVR~aaieAl~~LA~~l~~e~~~e 978 (1188)
-.++++..++.++.|.||..+...|.-++........-+..+|.+.+ ..+ .-|..|..+...++..+.-.-....+.-
T Consensus 54 Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 54 GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 46899999999999999999999999887776555444455666655 333 3488999998888887764332223334
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhcccC--CHHHHH-HHHHHHHHhhc
Q 001018 979 KIRVQMDAFLEDGSHEATVAVVRALAVAVPHT--TERLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 979 kl~~~~~slL~D~~~~vR~~vv~al~~l~p~~--~~~~r~-~IlP~L~~L~~ 1027 (1188)
+..+.+..+|.-++..+++.+++.|.-+...- ..+.+. ..++.+..|-.
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~ 185 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFN 185 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHc
Confidence 46777788898899999999999999986433 345555 56666666554
No 86
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=26 Score=45.07 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=131.9
Q ss_pred HHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcc
Q 001018 753 MHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQF--GDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPR 830 (1188)
Q Consensus 753 l~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f--G~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~r 830 (1188)
+..+++|...++- .+++--|-.+....+-++|+.= +.+.++. +.|-|+..|++-..- +..-+-.+.+.
T Consensus 176 l~e~f~~~~~~lL---~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~-l~~~lV~iLk~l~~~---~yspeydv~gi--- 245 (866)
T KOG1062|consen 176 LVEHFVIAFRKLL---CEKHHGVLIAGLHLITELCKISPDALSYFRD-LVPSLVKILKQLTNS---GYSPEYDVHGI--- 245 (866)
T ss_pred HHHHhhHHHHHHH---hhcCCceeeeHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHhcC---CCCCccCccCC---
Confidence 6788888888885 7888888888889999999872 4455555 889999999774210 00000001111
Q ss_pred hhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhh
Q 001018 831 TAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMV 910 (1188)
Q Consensus 831 taig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv 910 (1188)
..-|+-..+ +.+-+|||.-.. +......++..+.+-.. ..++.. .+|| +-+-+ -.+ |-
T Consensus 246 ---~dPFLQi~i--LrlLriLGq~d~--daSd~M~DiLaqvatnt--dsskN~--GnAI--------LYE~V-~TI--~~ 303 (866)
T KOG1062|consen 246 ---SDPFLQIRI--LRLLRILGQNDA--DASDLMNDILAQVATNT--DSSKNA--GNAI--------LYECV-RTI--MD 303 (866)
T ss_pred ---CchHHHHHH--HHHHHHhcCCCc--cHHHHHHHHHHHHHhcc--cccccc--hhHH--------HHHHH-HHH--Hh
Confidence 111111111 222345554211 11122222222111100 000000 1221 11111 111 12
Q ss_pred cCCChhHHHHHHHHHHHHHhh------------------hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc
Q 001018 911 VSSNIDMKINAANLLKVIVPY------------------INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK 972 (1188)
Q Consensus 911 ~D~~pnVR~naak~L~~L~~~------------------ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~ 972 (1188)
-++.+-.|.-+++.|.+.-.. .+. .+.++=.++|++-.+|+|..+|.-+.+-.-.|...-+
T Consensus 304 I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~-~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 304 IRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP-TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN 382 (866)
T ss_pred ccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc
Confidence 255667777777777765321 122 2334456777888888888888887777766666566
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH---HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 001018 973 NDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE---RLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus 973 ~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~---~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
...+++++... |+-...-++..++..+..++..+.| |+++.++-.+..-.++-|. ++.+.++..+
T Consensus 383 v~~mv~eLl~f----L~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~--------dv~~nll~LI 450 (866)
T KOG1062|consen 383 VRVMVKELLEF----LESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVND--------DVVNNLLRLI 450 (866)
T ss_pred HHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccch--------hhHHHHHHHH
Confidence 65555554444 4333456777777777777777765 4455454444444433333 4556555555
Q ss_pred H
Q 001018 1050 R 1050 (1188)
Q Consensus 1050 ~ 1050 (1188)
.
T Consensus 451 a 451 (866)
T KOG1062|consen 451 A 451 (866)
T ss_pred h
Confidence 4
No 87
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.34 E-value=32 Score=41.60 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=74.6
Q ss_pred hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH---HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCC
Q 001018 935 KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV---DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTT 1011 (1188)
Q Consensus 935 ~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~---ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~ 1011 (1188)
+.+=+.++|.|++-....+-.+|.....|+..+..++....+. .++.|.+.+-|.=++..++.+++.++..++...+
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 4555789999999888888779999999999999988776543 7799999998887888999999999999988874
Q ss_pred HHHHH---HHHHHHHHhh
Q 001018 1012 ERLRD---YLLSKIFQLS 1026 (1188)
Q Consensus 1012 ~~~r~---~IlP~L~~L~ 1026 (1188)
+-+-+ .++|.|.+++
T Consensus 398 ~~i~~hl~sLI~~LL~ls 415 (415)
T PF12460_consen 398 ELISEHLSSLIPRLLKLS 415 (415)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 44433 4778777654
No 88
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=3.1 Score=53.23 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=108.3
Q ss_pred HhhHHHHHhh--cCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHH
Q 001018 483 LLPLIMCAIE--RHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLL 560 (1188)
Q Consensus 483 llPli~~aa~--~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlL 560 (1188)
-+-|++.-+. .|..-..-..+++++.+.+||+|+-|=+.++++.+.+.... |+..-..|+-+..+--++-+.+-|+.
T Consensus 747 gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-~e~il~dL~e~Y~s~k~k~~~d~~lk 825 (982)
T KOG4653|consen 747 GLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-PEDILPDLSEEYLSEKKKLQTDYRLK 825 (982)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-chhhHHHHHHHHHhcccCCCccceeh
Confidence 3445555555 23333456779999999999999999999999999998873 43333333332222222233567888
Q ss_pred HHHHHHHHHhhhCh--hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCC--CchhhhhHHHHHHHhcc-CCChhH
Q 001018 561 VAQSCGELAEFVRP--EIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFP--NTDKYFKVEDLMFQLVC-DPSGVV 635 (1188)
Q Consensus 561 vAescg~La~~vg~--e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~--~~d~~~qi~~~f~~Ll~-D~s~~V 635 (1188)
|-|+++.++...|+ ..+...|+..+-.-..|..-+-|-....+|+.+|.... -.+.+.++......+.+ |.+.-|
T Consensus 826 VGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~v 905 (982)
T KOG4653|consen 826 VGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLV 905 (982)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhh
Confidence 89999998888775 23334555555555667777778888888888887653 23355555555554443 889999
Q ss_pred HHHHHHhh
Q 001018 636 VETTFKEL 643 (1188)
Q Consensus 636 r~aa~~~L 643 (1188)
|++|+..+
T Consensus 906 RRaAv~li 913 (982)
T KOG4653|consen 906 RRAAVHLL 913 (982)
T ss_pred HHHHHHHH
Confidence 99998776
No 89
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.23 E-value=2.3 Score=55.22 Aligned_cols=143 Identities=10% Similarity=0.111 Sum_probs=89.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhCHHHHH--HHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhH
Q 001018 768 LPEKEDNLRNRITKFLLAVSKQFGDSYLT--HIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPL 845 (1188)
Q Consensus 768 ~~D~sWrVR~Aia~~l~~La~~fG~e~t~--~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~ 845 (1188)
..|.+-.|-.-.+..|..+|..+|..+-. ..+.|.|+.-++|.-.. +|.++.. +-..+...+-+
T Consensus 304 ~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~--l~d~l~~----------~~d~~~ns~~l-- 369 (815)
T KOG1820|consen 304 LKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSE--LRDALLK----------ALDAILNSTPL-- 369 (815)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHH--HHHHHHH----------HHHHHHhcccH--
Confidence 38999999999999999999999887654 36788999989886421 1211100 01111110101
Q ss_pred HhhhhcCCCCcchhhhHHHHHHHhhccccccccc-ch-hhhHHHHHHhhh---chhhHHHhHHHHHHHhhcCCChhHHHH
Q 001018 846 LLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTV-KC-NAEIVNAVRFLC---TFEEHHTMVFNILWEMVVSSNIDMKIN 920 (1188)
Q Consensus 846 il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v-~~-~p~ll~ai~~Lg---~~e~~~~~iLpiL~~lv~D~~pnVR~n 920 (1188)
...-+.+..+--+++-.. .. ...+...++.++ .+..+...+.|.+..+++|..++||.+
T Consensus 370 ----------------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~A 433 (815)
T KOG1820|consen 370 ----------------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKA 433 (815)
T ss_pred ----------------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHH
Confidence 112222222222221111 01 111122224444 356788999999999999999999999
Q ss_pred HHHHHHHHHhhhchhhhhhh
Q 001018 921 AANLLKVIVPYINAKVTSMQ 940 (1188)
Q Consensus 921 aak~L~~L~~~ig~~~ls~~ 940 (1188)
+...+..+..++|.+.+...
T Consensus 434 a~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 434 ALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 99999999999998888654
No 90
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.86 E-value=43 Score=42.09 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHH
Q 001018 546 CWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMF 625 (1188)
Q Consensus 546 l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~ 625 (1188)
+.+.+. -....+.|+|+-...+.++++.- ...-+..+-.||+|++.-||..|++.|..+|..- .+....+..++.
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~ 102 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLV 102 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHH
Confidence 334444 45778888899888888877532 2223667788999999999999999999999863 345668889999
Q ss_pred HhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHh
Q 001018 626 QLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYIL 666 (1188)
Q Consensus 626 ~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~ 666 (1188)
+||+-.++..+.+....| -.+.+. +....+..++.+|.
T Consensus 103 QlL~tdd~~E~~~v~~sL-~~ll~~--d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSL-MSLLKQ--DPKGTLTGLFSQIE 140 (556)
T ss_dssp HHTT---HHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHH-HHHHhc--CcHHHHHHHHHHHH
Confidence 999966666666555444 222322 44555677777764
No 91
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.64 E-value=52 Score=42.68 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=19.8
Q ss_pred hhhhHHHhhccCCCcchHHHHHHHHHHHHHh
Q 001018 940 QVLPALVTLGSDQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 940 ~VlPaLv~LasD~d~dVR~aaieAl~~LA~~ 970 (1188)
.+..-|+.|..|+|..||-.|-.++..+++.
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3444566666777777777776666666654
No 92
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.32 E-value=5.3 Score=44.58 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=100.7
Q ss_pred HhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh--hHhhHHHHHHHHhhcCchhHHHH
Q 001018 483 LLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR--TEMELLPQCWEQINHMYEERRLL 560 (1188)
Q Consensus 483 llPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er--t~~ELLP~l~eli~Dd~dEVRlL 560 (1188)
|+|++.-+.....+++....+++.+-.++++++ ..+..+.+.+..++..-+.+- +-.-++..+|..-+ .+.
T Consensus 1 ll~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~----r~f-- 73 (234)
T PF12530_consen 1 LLPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND----RHF-- 73 (234)
T ss_pred ChHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc----hHH--
Confidence 466666666777788899999999999999999 899999999999988666555 55667777777433 111
Q ss_pred HHHHHHHHHhhhChhhhhhhhHHHHH----HhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhc-cCCChhH
Q 001018 561 VAQSCGELAEFVRPEIRDSLILSIVQ----QLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLV-CDPSGVV 635 (1188)
Q Consensus 561 vAescg~La~~vg~e~r~slLL~~Lq----qL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll-~D~s~~V 635 (1188)
+.|.+++. ...++ ..-++..|++..+.+.++..+|...|+ .-.++++.+...+ ++..+.+
T Consensus 74 -----~~L~~~L~--------~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~ 138 (234)
T PF12530_consen 74 -----PFLQPLLL--------LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVA 138 (234)
T ss_pred -----HHHHHHHH--------HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHH
Confidence 22222211 11111 134578999999999999999999887 4557888888888 6778888
Q ss_pred HHHHHHhh
Q 001018 636 VETTFKEL 643 (1188)
Q Consensus 636 r~aa~~~L 643 (1188)
++.+++.+
T Consensus 139 ~alale~l 146 (234)
T PF12530_consen 139 QALALEAL 146 (234)
T ss_pred HHHHHHHH
Confidence 88887776
No 93
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.19 E-value=20 Score=41.73 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=118.1
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc----hhhhhhhhhhHHHhhccCCC--cchHHHHHHHHHHHHHhhch
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN----AKVTSMQVLPALVTLGSDQN--LNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig----~~~ls~~VlPaLv~LasD~d--~dVR~aaieAl~~LA~~l~~ 973 (1188)
..++..+...++-..+.-+.-+++.+..++=.+| .+-+-..+.|.|.....|.. ..+|.+++.|++.++...+.
T Consensus 85 ~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 85 ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence 4466666666665555556667777777765655 45666789999999888875 46788999999998876554
Q ss_pred HH-HHHHHHHHHHH-Hh-----cCC---------ChhHHHHHHHHHHHhcccCCHHHHH----HHHHHHHHhhcCCCCCh
Q 001018 974 DM-IVDKIRVQMDA-FL-----EDG---------SHEATVAVVRALAVAVPHTTERLRD----YLLSKIFQLSAVPSSSS 1033 (1188)
Q Consensus 974 e~-~~ekl~~~~~s-lL-----~D~---------~~~vR~~vv~al~~l~p~~~~~~r~----~IlP~L~~L~~vpN~~~ 1033 (1188)
+. -...++..|.. |. .|+ +..+..+++.+|+-|...++..-+. ..+|.|..+-.-+++
T Consensus 165 d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~-- 242 (309)
T PF05004_consen 165 DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV-- 242 (309)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH--
Confidence 32 22333344442 32 132 2579999999999999999884333 377888887665443
Q ss_pred hhHHHHHHHHHHHHHHHhhcc---ccCchhhhhhhHHHHHHHHHhccC-CCChHHHHHHHHHHhh
Q 001018 1034 DVMRRRERANAFCESIRALDA---TELSATSVRDFLLPAIQNLLKDAD-SLDPAHKEALEIIMKD 1094 (1188)
Q Consensus 1034 ~~~~R~~vAk~l~~a~~aL~~---~~l~~~~v~~~ilP~L~~L~~D~d-~l~~~~k~~l~~i~ke 1094 (1188)
.-|.....++.-+|..... .+. .--.+.++-.++.|.+|.. .-..-.|-+..+..|+
T Consensus 243 --~VRiAAGEaiAll~E~~~~~~~~~~--~~~~~~l~~~l~~La~dS~K~~sKkdrk~qRs~Frd 303 (309)
T PF05004_consen 243 --DVRIAAGEAIALLYELARDHEEDFL--YEDMEELLEQLRELATDSSKSRSKKDRKQQRSSFRD 303 (309)
T ss_pred --HHHHHHHHHHHHHHHHhhccccccc--ccCHHHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 2387766666555554331 111 1133456777788887753 2333334444444443
No 94
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=90.70 E-value=0.11 Score=39.25 Aligned_cols=30 Identities=43% Similarity=0.561 Sum_probs=27.2
Q ss_pred hhhHhHHHHHHHHHHcCCcccceecccccc
Q 001018 150 ERKDLNCAVKEYLLLAGYRLTAMTFYEEVT 179 (1188)
Q Consensus 150 E~r~LN~lv~eYLl~~~Ykltsitf~dE~~ 179 (1188)
.++.||.+|-+||..+||.-|+-+|.+|..
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~ 31 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESG 31 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhC
Confidence 367899999999999999999999999873
No 95
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=62 Score=41.69 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=97.3
Q ss_pred hhHHHHHhhc----CCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHh-hHHHHHHHHhhcCchhHH
Q 001018 484 LPLIMCAIER----HPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEM-ELLPQCWEQINHMYEERR 558 (1188)
Q Consensus 484 lPli~~aa~~----h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~-ELLP~l~eli~Dd~dEVR 558 (1188)
-|||+..|-+ -..+..-..+..=+....+|++|-+|+.++-.+..+- ..+++-++. -+++.++.++.|....|
T Consensus 99 np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~-~~~~~~~~~~gl~~~L~~ll~D~~p~V- 176 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF-DIDPDLVEDSGLVDALKDLLSDSNPMV- 176 (734)
T ss_pred CHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh-cCChhhccccchhHHHHHHhcCCCchH-
Confidence 3555533333 2245566778888888999999999999887766653 455544444 48899999888777655
Q ss_pred HHHHHHHHHHHhhhCh-------hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch-hhhhHHHHHHHhccC
Q 001018 559 LLVAQSCGELAEFVRP-------EIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD-KYFKVEDLMFQLVCD 630 (1188)
Q Consensus 559 lLvAescg~La~~vg~-------e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d-~~~qi~~~f~~Ll~D 630 (1188)
+|.++.++...... .....++-..+..|-+-.+| +=+.-|..++.++++++ -..++.+...+.++-
T Consensus 177 --VAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW----~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh 250 (734)
T KOG1061|consen 177 --VANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW----GQIFILDCLAEYVPKDSREAEDICERLTPRLQH 250 (734)
T ss_pred --HHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh----hHHHHHHHHHhcCCCCchhHHHHHHHhhhhhcc
Confidence 44545444433211 22233334444555555555 55666777888888765 234577777777777
Q ss_pred CChhHHHHHHHhh
Q 001018 631 PSGVVVETTFKEL 643 (1188)
Q Consensus 631 ~s~~Vr~aa~~~L 643 (1188)
..+.|.-.+.+.+
T Consensus 251 ~n~avvlsavKv~ 263 (734)
T KOG1061|consen 251 ANSAVVLSAVKVI 263 (734)
T ss_pred CCcceEeehHHHH
Confidence 7777777776665
No 96
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=76 Score=42.73 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=84.2
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhh---hhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQ---VLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~---VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
++.+...++..+.-.+....+.||-.|+.-++.++..+....++.+ |+|.+..|.+|...-||..+-.-+..+...+
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 4666677888888889999999999999999999999999888766 5999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 001018 972 KNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAV 1005 (1188)
Q Consensus 972 ~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~ 1005 (1188)
|.+++-.-+-..-+.||. +||..-.+...+
T Consensus 901 g~~eLe~~~pee~~klL~----nIRK~r~R~~rK 930 (1176)
T KOG1248|consen 901 GAEELESFLPEEDMKLLT----NIRKRRRRKKRK 930 (1176)
T ss_pred CHHHHHhhCHHHHHHHHH----HHHHHHHHhhhh
Confidence 987664322233344554 555444444333
No 97
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=1.5 Score=55.53 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHH
Q 001018 903 FNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRV 982 (1188)
Q Consensus 903 LpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~ 982 (1188)
+..|-..++|++|.+|..|.+.|.-| -...+..-++=|+.+.+.|+-..||-.+..||+.|-. ++.+.- +++..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e 183 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEE 183 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHH
Confidence 45577889999999999999988765 2334555667788999999999999999999999875 444333 37888
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 983 QMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 983 ~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
.+..+|.|..+.|-=.++.||..+.|.
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 899999999888888888888777664
No 98
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.44 E-value=35 Score=42.44 Aligned_cols=232 Identities=14% Similarity=0.236 Sum_probs=127.2
Q ss_pred hhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--HhCCccccccCCccccccccCCCcchhHh
Q 001018 757 CFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMV--AVGDNANLTFFPSTIHSGIRGLKPRTAVG 834 (1188)
Q Consensus 757 lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~--lL~D~~~~~i~R~a~~~~I~~L~~rtaig 834 (1188)
++|.++.. .|.+.+|-...-+.+.+++.-+...-+...|..+|+. .-.|.. |..+... .+..+=
T Consensus 239 ~~~~liAs----ad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~-----~~pa~~~-----lq~kIL 304 (501)
T PF13001_consen 239 FPPLLIAS----ADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENG-----RPPASPR-----LQEKIL 304 (501)
T ss_pred HhheeeEE----eCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcC-----CCCCCHH-----HHHHHH
Confidence 44444443 6888999999999999998888888888888888773 222211 1000000 011110
Q ss_pred hhhhhh----chhh----HHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHH
Q 001018 835 ERLATM----GVLP----LLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNIL 906 (1188)
Q Consensus 835 ~~l~~~----~lLP----~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL 906 (1188)
.-+.+. ...| ++..|+-+.. .. .=++.+...+....+|...+++ ...+ ..+...|+.-+
T Consensus 305 ~~L~kS~~Aa~~~~~~~~i~~~~l~~~~-~~----~klk~~~l~F~~~~~~~~~~~~--~~~l------~~l~~~i~~~g 371 (501)
T PF13001_consen 305 SLLSKSVIAATSFPNILQIVFDGLYSDN-TN----SKLKSLALQFIRGSSWIFKHIS--PQIL------KLLRPVILSQG 371 (501)
T ss_pred HHHHHhHHHHhCCccHHHHHhccccCCc-cc----cccchhcchhhhcchHHhhhcC--HHHH------HHHHHHHHhcC
Confidence 000000 0011 1111222210 00 0122222222211134443443 2222 22334555555
Q ss_pred HHhhc--------CCChhHHHHHHHHHHHHHhhhchhhh-hhhhhhHHH-hhccCCCcchHHHHHHHHHHHHHhhch--H
Q 001018 907 WEMVV--------SSNIDMKINAANLLKVIVPYINAKVT-SMQVLPALV-TLGSDQNLNVKYASIDAFGAVAQHFKN--D 974 (1188)
Q Consensus 907 ~~lv~--------D~~pnVR~naak~L~~L~~~ig~~~l-s~~VlPaLv-~LasD~d~dVR~aaieAl~~LA~~l~~--e 974 (1188)
|.+.. ......|--+-..++.|+.....-.. .-.++--|- .| ++...+||.++.+|+..++.++.. +
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 55552 35778899999999999887544321 122223333 34 899999999999999999998754 1
Q ss_pred ----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH
Q 001018 975 ----MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD 1016 (1188)
Q Consensus 975 ----~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~ 1016 (1188)
.....+.........+..+..|+.+++=...+.|--+...|-
T Consensus 451 ~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~aR~ 496 (501)
T PF13001_consen 451 DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFSDVPARY 496 (501)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCccchHHHH
Confidence 122333444444556778899999999999998887765543
No 99
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.10 E-value=3.2 Score=46.92 Aligned_cols=214 Identities=18% Similarity=0.198 Sum_probs=122.6
Q ss_pred hHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcch
Q 001018 752 WMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRT 831 (1188)
Q Consensus 752 wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rt 831 (1188)
|.-.+-+|.+++.- ...+..--||..+++. ||.-. ...+++..-+..+|+.-. +|.+-.-.|+.+.-+.
T Consensus 63 ~~~~~Av~~l~~vl-~desq~pmvRhEAaea-------lga~~-~~~~~~~l~k~~~dp~~~--v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVL-LDESQEPMVRHEAAEA-------LGAIG-DPESLEILTKYIKDPCKE--VRETCELAIKRLEWKD 131 (289)
T ss_pred hccchhhHHHHHHh-cccccchHHHHHHHHH-------HHhhc-chhhHHHHHHHhcCCccc--cchHHHHHHHHHHHhh
Confidence 33344556665553 1244455688777655 45544 444556666666776311 1322111222221111
Q ss_pred hHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhc
Q 001018 832 AVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVV 911 (1188)
Q Consensus 832 aig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~ 911 (1188)
.++.. ....| |.. +=|.+.....-..-++..+.+.+.+ .+.. +.+ .++++-+|+.+ -+..|.+.+.
T Consensus 132 ~~~~~---~~~~p-~~S-vdPa~p~~~ssv~~lr~~lld~t~~-l~~R-y~a--mF~LRn~g~Ee-----aI~al~~~l~ 197 (289)
T KOG0567|consen 132 IIDKI---ANSSP-YIS-VDPAPPANLSSVHELRAELLDETKP-LFER-YRA--MFYLRNIGTEE-----AINALIDGLA 197 (289)
T ss_pred ccccc---cccCc-ccc-CCCCCccccccHHHHHHHHHhcchh-HHHH-Hhh--hhHhhccCcHH-----HHHHHHHhcc
Confidence 11110 01122 222 3444321110012344444444433 1222 333 66767677633 4456788889
Q ss_pred CCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccC--CCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhc
Q 001018 912 SSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSD--QNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLE 989 (1188)
Q Consensus 912 D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD--~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~ 989 (1188)
++++..|--|+-.|++|.. ..-+|.|.+-..| .+.=||.-|.+|+|.+|. ++....+..+++
T Consensus 198 ~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLG 261 (289)
T ss_pred cchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcC
Confidence 9999999999999988753 3446667664433 478899999999999884 556777888999
Q ss_pred CCChhHHHHHHHHHHHh
Q 001018 990 DGSHEATVAVVRALAVA 1006 (1188)
Q Consensus 990 D~~~~vR~~vv~al~~l 1006 (1188)
|+...||..|..+|..+
T Consensus 262 D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 262 DEERVVRESCEVALDML 278 (289)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 100
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=84 Score=42.00 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh---hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh---
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR---TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP--- 574 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er---t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~--- 574 (1188)
+..+..++.-++|-|-.+|..|+++++.++..++++- +...++-.+...-+|..|- .+|-.||+.-+.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH------gacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH------GACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH------HHHHHHHHHHhcCCc
Confidence 4677888888899999999999999999999988533 2333333222222344452 667777766332
Q ss_pred -hhhhhhhHHHHHHhhc-CC-------cHHHHHHHHHHHHhhcccCCCchh--h-hhHHH-HHHHhccCCChhHHHHHHH
Q 001018 575 -EIRDSLILSIVQQLVE-DS-------ATVVREAAARNLALLLPLFPNTDK--Y-FKVED-LMFQLVCDPSGVVVETTFK 641 (1188)
Q Consensus 575 -e~r~slLL~~LqqL~e-D~-------e~~VR~aAAksL~~l~~~l~~~d~--~-~qi~~-~f~~Ll~D~s~~Vr~aa~~ 641 (1188)
..+...++|.+.+-+. |+ ...||+||.=-.-.++..-...+. + .++.. ++...+-|++=-+|.+|..
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 3344457777776333 32 346899988766666666555432 1 12332 3335666888888888866
Q ss_pred hhHHHHHh
Q 001018 642 ELLPAVIN 649 (1188)
Q Consensus 642 ~Llpala~ 649 (1188)
.|.-.+++
T Consensus 494 AlqE~VGR 501 (1133)
T KOG1943|consen 494 ALQENVGR 501 (1133)
T ss_pred HHHHHhcc
Confidence 66444444
No 101
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=88 Score=42.20 Aligned_cols=348 Identities=17% Similarity=0.134 Sum_probs=183.9
Q ss_pred hHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhh------hhhhhHHHHHHHHHHHHHHHHHHHh
Q 001018 643 LLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGE------RERWNLEVLLRMMAELLPFMQKNAI 716 (1188)
Q Consensus 643 Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~------d~sWrV~~~l~~l~~LLP~i~~~l~ 716 (1188)
|+|+||..-.++..-++.+.+.|+..++.-+. -++.+...++.|-+ +..=++.++.+.-..++|.+|..-.
T Consensus 501 LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~e---lr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~yt 577 (1176)
T KOG1248|consen 501 LLPGFCNYPVDLAESFTDLAPILGAALLKRPE---LRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYT 577 (1176)
T ss_pred hChhhhCCCccHHHHHHHHHHHHHHHHhcchH---hHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 46888887766665455556655544332221 12223322222211 1122445566677778887777433
Q ss_pred hhCCCCCCCCCcccccc--hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 001018 717 ETCPFSSVSLSEETVFP--SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSY 794 (1188)
Q Consensus 717 ~~~pf~s~~qd~evrl~--~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~ 794 (1188)
...+- .. .....+.+ ..+...|-. ....-+...+.-.+.+++ .|....++.-..-.+-.+.-++++-.
T Consensus 578 q~~~~-~~-~~l~~~~~~L~~i~~~~~~-----~t~~dv~~~l~~s~~e~a---s~~~~s~~~~~~~slLdl~~~~a~~~ 647 (1176)
T KOG1248|consen 578 QTVAA-GR-KILASRSTVLEIIRVDYFT-----VTPTDVVGSLKDSAGELA---SDLDESVASFKTLSLLDLLIALAPVQ 647 (1176)
T ss_pred CCCcc-cc-ccHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHHHhHh---ccchhhhhhHHHHHHHHHHHhhhccc
Confidence 22211 10 11111111 111111100 012225556666677776 44445666666666666666667766
Q ss_pred HHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCC-cchhhhHHHHHHHhhccc
Q 001018 795 LTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPS-KHDQLADYLRKLLVEGTM 873 (1188)
Q Consensus 795 t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~-~~~~l~nyL~rLt~~~s~ 873 (1188)
+...+...| .+ |+..+ + ....+.+--.+.+|-.++.+ |... --++...+++....+..+
T Consensus 648 ~e~~vs~l~-~v--~~~~e---~------------~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 648 TESQVSKLF-TV--DPEFE---N------------SSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred cchhHHHHH-Hh--hHHhh---c------------cccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHh
Confidence 666666666 11 11111 0 01112222233333322221 1000 001112345554444333
Q ss_pred ccccccchhhhHHHHHHhh---hc---hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHh--h---hchh---hhhh
Q 001018 874 KENHTVKCNAEIVNAVRFL---CT---FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVP--Y---INAK---VTSM 939 (1188)
Q Consensus 874 ~~~W~v~~~p~ll~ai~~L---g~---~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~--~---ig~~---~ls~ 939 (1188)
.-.-.. +.+ -+.++..| +. .+-+...|-.+++.+ +|.+..-|-++-.+|..|+. . .|.+ .+-+
T Consensus 708 s~~~~~-~~~-rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln 784 (1176)
T KOG1248|consen 708 SSSSPA-QAS-RLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN 784 (1176)
T ss_pred ccchHH-HHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH
Confidence 200000 111 12232211 11 123335555566666 99999999999999988872 2 3322 2445
Q ss_pred hhhhHHHh-hccCCCcchHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHH
Q 001018 940 QVLPALVT-LGSDQNLNVKYASIDAFGAVAQHFK---NDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLR 1015 (1188)
Q Consensus 940 ~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l~---~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r 1015 (1188)
..++.|.. |..|. .+++-..|-|+..+...++ .+.+..++..++..|+.-+.+.++-.++..+..++-.++....
T Consensus 785 efl~~Isagl~gd~-~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 785 EFLSIISAGLVGDS-TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 56666665 44444 4555555889988887644 4688899999999999999999999999999999998887665
Q ss_pred H----HHHHHHHHhhc
Q 001018 1016 D----YLLSKIFQLSA 1027 (1188)
Q Consensus 1016 ~----~IlP~L~~L~~ 1027 (1188)
. .|+|.+..++.
T Consensus 864 ~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSH 879 (1176)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5 48998888876
No 102
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.77 E-value=5.5 Score=50.18 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=81.4
Q ss_pred chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh
Q 001018 894 TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 894 ~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~ 970 (1188)
..+.+...++-.++..+..+..+|||++...+..+... ++ +.+-+.+.-+|..=..|....||.-|+.|+..+-.-
T Consensus 78 ~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid-d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID-DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 34557778888899999999999999999999999873 33 444466777777777899999999999999888753
Q ss_pred hchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 001018 971 FKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAV 1005 (1188)
Q Consensus 971 l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~ 1005 (1188)
-+.+++ +-+......+-.||+..||-+++..+..
T Consensus 157 ~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 157 PKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 333332 1122223335679999999998877654
No 103
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.51 E-value=80 Score=41.17 Aligned_cols=95 Identities=21% Similarity=0.193 Sum_probs=60.0
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhh-HHH
Q 001018 544 PQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFK-VED 622 (1188)
Q Consensus 544 P~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~q-i~~ 622 (1188)
+++..=+.|..+++|-++...++.+- ...-...++++++++.+|+.+.||..||-++.++-..=.+ ..... ...
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-l~~~~g~~~ 169 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-LYHELGLID 169 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-hhhcccHHH
Confidence 33334444555555555555444432 1111223577888999999999999999888877644222 12222 577
Q ss_pred HHHHhccCCChhHHHHHHHhh
Q 001018 623 LMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 623 ~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
....|+.|+++.|.++|...|
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 170 ILKELVADSDPIVIANALASL 190 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHH
Confidence 778889999999998885544
No 104
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=4.1 Score=47.72 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=97.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhch--hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh-chHHHH---
Q 001018 904 NILWEMVVSSNIDMKINAANLLKVIVPYINA--KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF-KNDMIV--- 977 (1188)
Q Consensus 904 piL~~lv~D~~pnVR~naak~L~~L~~~ig~--~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l-~~e~~~--- 977 (1188)
..+..+.+...--||-|+...|..|...-.. .++..--+|.|+.|.+-.|.+|||++..||+.++-.- ..+.+.
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 3445577777778888998888888766433 3566667999999999999999999999999888532 222222
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH--HHHH-HHHHHHHHhhcCCCC
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE--RLRD-YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~--~~r~-~IlP~L~~L~~vpN~ 1031 (1188)
-|+.|.+..+..|++..+.-....++.-++.-..- ++.+ --+|.+++|..-|..
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~ 306 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG 306 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch
Confidence 35888899999999999999999999988765533 2333 468999999876654
No 105
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.38 E-value=2.1 Score=53.90 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhCch------------hhHhhHHHHH----HHHhhcCchhHHHHH
Q 001018 502 SLTHTLFNLIKR----PDEKQRRIIMDACVTLAKNVGEM------------RTEMELLPQC----WEQINHMYEERRLLV 561 (1188)
Q Consensus 502 ~Ll~ll~nLiKd----ddp~vRr~aa~~l~~iA~~lg~e------------rt~~ELLP~l----~eli~Dd~dEVRlLv 561 (1188)
+++..++.|++. ..+.+|..|+-+++.++...-.. ....++++.+ .+..+....+.+++.
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 667777777775 46778888888888877533222 3444555555 434455566788999
Q ss_pred HHHHHHHHhhhChhhhhhhhHHHHHHhhcCC---cHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCC--ChhHH
Q 001018 562 AQSCGELAEFVRPEIRDSLILSIVQQLVEDS---ATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDP--SGVVV 636 (1188)
Q Consensus 562 Aescg~La~~vg~e~r~slLL~~LqqL~eD~---e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~--s~~Vr 636 (1188)
..++|.++- ...++.|...+.++ +..||-+|+.+|..++...++ .+.+.++++..|. ..+||
T Consensus 511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-----~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-----KVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-----HHHHHHHHHHH-TTS-HHHH
T ss_pred HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHhcCCCCChhHH
Confidence 999999852 12366777777777 899999999999988655543 5777777777776 46699
Q ss_pred HHHHHhh
Q 001018 637 ETTFKEL 643 (1188)
Q Consensus 637 ~aa~~~L 643 (1188)
.+|+..+
T Consensus 578 iaA~~~l 584 (618)
T PF01347_consen 578 IAAYLIL 584 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9996554
No 106
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.16 E-value=18 Score=44.97 Aligned_cols=97 Identities=8% Similarity=0.110 Sum_probs=58.1
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH---HHHHHHHHH
Q 001018 908 EMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM---IVDKIRVQM 984 (1188)
Q Consensus 908 ~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~---~~ekl~~~~ 984 (1188)
-.+.+.-|+||....+.|+... .++.+++-.+ .|.+...-+-.+...++.|++.+--+..+-|.+- +.+-+...+
T Consensus 537 Pavrn~a~~IrE~gve~L~l~c-lldv~La~~n-~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~g~~k~ds~l~~Il 614 (885)
T COG5218 537 PAVRNSAPNIRETGVEILELGC-LLDVALARPN-HAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDEGEGKLDSLLGDIL 614 (885)
T ss_pred hhhccCCCchhhhhhhhhhhhh-hhhHhhcCCc-hHHHHHHHhccchhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 3456678999999999988543 4555544333 4666777778889999999988866665545432 222223333
Q ss_pred HHHhcC-CChhHHHHHHHHHHHh
Q 001018 985 DAFLED-GSHEATVAVVRALAVA 1006 (1188)
Q Consensus 985 ~slL~D-~~~~vR~~vv~al~~l 1006 (1188)
-..++. ..+....-.+.+++++
T Consensus 615 ~~~l~~~e~~E~q~i~aegl~Kl 637 (885)
T COG5218 615 RHILQGLETKERQDIIAEGLSKL 637 (885)
T ss_pred HHHHhccCchhHHHHhhhHHHHH
Confidence 333322 2334444555565554
No 107
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=8.1 Score=53.37 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=118.2
Q ss_pred chhHHHHHHhhhcccchhcchhhHHhHhhHHH---------------------------HHhhcC--C-ChhhHHHHHHH
Q 001018 457 GLGTIQILADALPKIVPYVLINHREELLPLIM---------------------------CAIERH--P-DTSTRDSLTHT 506 (1188)
Q Consensus 457 ~~~~v~lls~~lP~Ivp~V~~~~R~ellPli~---------------------------~aa~~h--~-~~~~R~~Ll~l 506 (1188)
-++++.++++.+|++-+.+....=+.|.-.+. ++--.| . ....|..-..+
T Consensus 801 Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l 880 (2067)
T KOG1822|consen 801 IDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTL 880 (2067)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence 36688999999999988876544444322221 000011 1 23567777889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHH-HhhcCchhHHHHHHHHHHHHHhhhChhhhhhh---hH
Q 001018 507 LFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWE-QINHMYEERRLLVAQSCGELAEFVRPEIRDSL---IL 582 (1188)
Q Consensus 507 l~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~e-li~Dd~dEVRlLvAescg~La~~vg~e~r~sl---LL 582 (1188)
+++.+-.++|+.|-++.++++.+|..+|.....+++...+.. +.+-+..=.|.-..=++|.+-+|+|+-...++ -+
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v 960 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSV 960 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHH
Confidence 999999999999999999999999999999999999998876 44444444566667789999999886433333 45
Q ss_pred HHHHHhhcCCcH-HHHHHHHHHHHhhcccCCCch
Q 001018 583 SIVQQLVEDSAT-VVREAAARNLALLLPLFPNTD 615 (1188)
Q Consensus 583 ~~LqqL~eD~e~-~VR~aAAksL~~l~~~l~~~d 615 (1188)
+++..|++|... .|+.-..++++.+..--++..
T Consensus 961 ~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~ 994 (2067)
T KOG1822|consen 961 SILLALATDSTSPVVQTWSLHALALILDSSGPMF 994 (2067)
T ss_pred HHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee
Confidence 688889999877 999999999999887766654
No 108
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.23 E-value=4.2 Score=53.00 Aligned_cols=185 Identities=23% Similarity=0.230 Sum_probs=120.6
Q ss_pred hhcccchhHHHHHHhhhc------------ccchhcchhh---HHhHhhHHH--HHhhcCCChhhHHHHHH----HHHHh
Q 001018 452 ASDKMGLGTIQILADALP------------KIVPYVLINH---REELLPLIM--CAIERHPDTSTRDSLTH----TLFNL 510 (1188)
Q Consensus 452 ~~~~~~~~~v~lls~~lP------------~Ivp~V~~~~---R~ellPli~--~aa~~h~~~~~R~~Ll~----ll~nL 510 (1188)
-|-.....+.-+|++.|- -|.|+|+--. =.||.|++. =|=....|++-+.+|.+ .+|--
T Consensus 482 LSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 482 LSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE
Confidence 344446667777777764 4788886543 346667554 23333445555555542 23333
Q ss_pred hcCC----CHHHHHHHHHHHHHHHHH--hCc-hhhHhhHHHHHHHHhhcC-chhHHHHHHHHHHHHH------hhhChhh
Q 001018 511 IKRP----DEKQRRIIMDACVTLAKN--VGE-MRTEMELLPQCWEQINHM-YEERRLLVAQSCGELA------EFVRPEI 576 (1188)
Q Consensus 511 iKdd----dp~vRr~aa~~l~~iA~~--lg~-ert~~ELLP~l~eli~Dd-~dEVRlLvAescg~La------~~vg~e~ 576 (1188)
.-+| .|.||-+++=-|..|... +|. .-....|+-.|.++.+|+ .+=.|.=++=++|.|- ...|...
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~ 641 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD 641 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc
Confidence 3344 469999999888888764 343 556677999999999986 4666666777778765 3355555
Q ss_pred hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccC----CCch--------------hhhhHH----HHHHHhccCCChh
Q 001018 577 RDSLILSIVQQLVEDSATVVREAAARNLALLLPLF----PNTD--------------KYFKVE----DLMFQLVCDPSGV 634 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l----~~~d--------------~~~qi~----~~f~~Ll~D~s~~ 634 (1188)
.++. -|-.+..|.-++||.||+-.|+.+.... +... ...... -..+.+++|.++-
T Consensus 642 ~Ahe---kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgspl 718 (1387)
T KOG1517|consen 642 NAHE---KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPL 718 (1387)
T ss_pred cHHH---HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchH
Confidence 5544 4455788999999999999999998874 2210 011122 2566789999999
Q ss_pred HHHHH
Q 001018 635 VVETT 639 (1188)
Q Consensus 635 Vr~aa 639 (1188)
||..-
T Consensus 719 vr~ev 723 (1387)
T KOG1517|consen 719 VRTEV 723 (1387)
T ss_pred HHHHH
Confidence 99764
No 109
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.73 E-value=8.9 Score=46.49 Aligned_cols=118 Identities=18% Similarity=0.157 Sum_probs=88.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhh---
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRD--- 578 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~--- 578 (1188)
.-+.-+.+-.+|.++.+=+.|.+.|..++...-|.....-|-|.+.. .++.+-+++......+.+-+..++-.
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 34677788899999999999999999888777787777777775433 34556677777777877777766433
Q ss_pred hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHh
Q 001018 579 SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQL 627 (1188)
Q Consensus 579 slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~L 627 (1188)
..|.|.+.+...-.+..||.+||=+|..+...+|.+ .+.|++.+|
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~----~mePhL~~L 491 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME----EMEPHLEQL 491 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH----hhhhHhhhc
Confidence 337899999999999999999999988887777744 345544433
No 110
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.35 E-value=90 Score=39.16 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=78.3
Q ss_pred hhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHH-hhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch
Q 001018 537 RTEMELLPQCWEQINHMYEERRLLVAQSCGELA-EFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD 615 (1188)
Q Consensus 537 rt~~ELLP~l~eli~Dd~dEVRlLvAescg~La-~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d 615 (1188)
.....+-|++..-..|+.+.|-+-+|-....|+ +++|++..... ++.|+.+.+-.--.-|-+|.+-|..++-.-|...
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~-vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQT-VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 345668898877788899999999999988887 67888876665 7888998877777779999999999987766532
Q ss_pred hhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 616 KYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 616 ~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.-+-+-.-.|+.|..-.+..-|+..|
T Consensus 339 --~vcN~evEsLIsd~Nr~IstyAITtL 364 (898)
T COG5240 339 --SVCNKEVESLISDENRTISTYAITTL 364 (898)
T ss_pred --eecChhHHHHhhcccccchHHHHHHH
Confidence 22233445677787777766665444
No 111
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=75 Score=40.77 Aligned_cols=234 Identities=15% Similarity=0.203 Sum_probs=139.0
Q ss_pred HHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCcc-ccccCCccccccccCCCcch
Q 001018 753 MHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNA-NLTFFPSTIHSGIRGLKPRT 831 (1188)
Q Consensus 753 l~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~-~~~i~R~a~~~~I~~L~~rt 831 (1188)
+.-++.+.+..|. .-..-.||.-++-.+.+++...-...- --.|.|..-|.|+. .+ -.|+.++|-.|
T Consensus 141 LARDLa~Dv~tLL---~sskpYvRKkAIl~lykvFLkYPeAlr--~~FprL~EkLeDpDp~V---~SAAV~VICEL---- 208 (877)
T KOG1059|consen 141 LARDLADDVFTLL---NSSKPYVRKKAILLLYKVFLKYPEALR--PCFPRLVEKLEDPDPSV---VSAAVSVICEL---- 208 (877)
T ss_pred hhHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHhhhHhHh--hhHHHHHHhccCCCchH---HHHHHHHHHHH----
Confidence 4455666666664 444556999999998888877654432 23577788888873 22 23444443333
Q ss_pred hHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhc----hhhHHHhHHHHHH
Q 001018 832 AVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCT----FEEHHTMVFNILW 907 (1188)
Q Consensus 832 aig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~----~e~~~~~iLpiL~ 907 (1188)
+.+-+..++ | +.--++.+.+.. .-||.. +.-|+.+|. ...+.+.++|-+.
T Consensus 209 --ArKnPknyL-~---------------LAP~ffkllttS--sNNWmL------IKiiKLF~aLtplEPRLgKKLieplt 262 (877)
T KOG1059|consen 209 --ARKNPQNYL-Q---------------LAPLFYKLLVTS--SNNWVL------IKLLKLFAALTPLEPRLGKKLIEPIT 262 (877)
T ss_pred --HhhCCcccc-c---------------ccHHHHHHHhcc--CCCeeh------HHHHHHHhhccccCchhhhhhhhHHH
Confidence 223333222 1 111234444332 247987 666666652 4667788888888
Q ss_pred HhhcCCChhHHHHHHHH-HHHHHhhh---------chhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH
Q 001018 908 EMVVSSNIDMKINAANL-LKVIVPYI---------NAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV 977 (1188)
Q Consensus 908 ~lv~D~~pnVR~naak~-L~~L~~~i---------g~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ 977 (1188)
++...+++ .+. ++-++.++ +.....+--+-.|..+..|.|.+.||-..-|++.++..- ++.+
T Consensus 263 ~li~sT~A------mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p~~V- 334 (877)
T KOG1059|consen 263 ELMESTVA------MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-PKAV- 334 (877)
T ss_pred HHHHhhHH------HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-HHHH-
Confidence 88764432 222 22222222 122233334566778889999999999999999888632 1222
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHH----------------HhcccCCH-HHHHHHHHHHHHhhcCCCCC
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALA----------------VAVPHTTE-RLRDYLLSKIFQLSAVPSSS 1032 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~----------------~l~p~~~~-~~r~~IlP~L~~L~~vpN~~ 1032 (1188)
..=...+...|.|.+.+||...+.-+- .-+...+. .+|+.++..+..+++-.||.
T Consensus 335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~ 406 (877)
T KOG1059|consen 335 QAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQ 406 (877)
T ss_pred HHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhh
Confidence 334555677899998888876554332 22222233 78888888888888877763
No 112
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.11 E-value=1e+02 Score=38.65 Aligned_cols=457 Identities=17% Similarity=0.174 Sum_probs=245.2
Q ss_pred chhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc
Q 001018 535 EMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT 614 (1188)
Q Consensus 535 ~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~ 614 (1188)
|+.+.++|.=-+..+.+|+.+..|..+=-+..+|...-....-. .-++...+..-....||-+|.++|-.+...-
T Consensus 59 ~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~--tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~--- 133 (898)
T COG5240 59 PEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG--TSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE--- 133 (898)
T ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH--HHHHHHhhccCCccccccHHHHHHHHhcCcc---
Confidence 56677777766778889999999987666555555442221111 1123444666667799999999998776432
Q ss_pred hhhhhHHHHHHHhccCCChhHHHHHHHh---hHH----HHHhcccchHHHHHHHHHHHhhhhccCCCc---cccc--hhh
Q 001018 615 DKYFKVEDLMFQLVCDPSGVVVETTFKE---LLP----AVINWGSKLDHILRVLLSYILSSAQRCPPL---SGVE--GSV 682 (1188)
Q Consensus 615 d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~---Llp----ala~~~~~~~~ll~~ll~~L~~~v~~lp~~---~~v~--~~l 682 (1188)
....++.++.+..-|+...+|.+|+-. |+| ...+|.++...-+. +++.-|.- .+.. +.-
T Consensus 134 -tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~--------~l~q~p~~~~n~gy~Pn~~~ 204 (898)
T COG5240 134 -TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVL--------DLKQFPNQHGNEGYEPNGNP 204 (898)
T ss_pred -hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHh--------hHhhCcCccCCcccCCCCCh
Confidence 233677888888889999999887321 222 23455543322111 12233331 1111 111
Q ss_pred hhhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccccc---chhhhhhhhcCCCCccchhhHHhhhh
Q 001018 683 ESHLRVLGERERW-NLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVF---PSSLLELYAGGHIEWPAFEWMHVDCF 758 (1188)
Q Consensus 683 a~~l~~Lg~d~sW-rV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl---~~~ll~l~~~~~~~w~~~~wl~~~lL 758 (1188)
-++-+.+|-=.+. |.+- +. ++. +.+++.... .-..|...+.+ ...+++ . . .-+...+.
T Consensus 205 isqYHalGlLyq~kr~dk---ma--~lk-lv~hf~~n~--smknq~a~V~lvr~~~~ll~---~-n------~q~~~q~r 266 (898)
T COG5240 205 ISQYHALGLLYQSKRTDK---MA--QLK-LVEHFRGNA--SMKNQLAGVLLVRATVELLK---E-N------SQALLQLR 266 (898)
T ss_pred HHHHHHHHHHHHHhcccH---HH--HHH-HHHHhhccc--ccccchhheehHHHHHHHHH---h-C------hHHHHHHH
Confidence 1111222210000 0000 10 111 122222110 00011111111 111111 0 0 00222334
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhh
Q 001018 759 PGLIQLACLLPEKEDNLRNRITKFLLAVSKQF-GDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERL 837 (1188)
Q Consensus 759 P~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f-G~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l 837 (1188)
|-+-.- +.|+-.-|-..+|+.+-.|+..- |.++....+ .....+|+-+- +..+.
T Consensus 267 pfL~~w---ls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~v-s~L~~fL~s~r---------------------v~~rF 321 (898)
T COG5240 267 PFLNSW---LSDKFEMVFLEAARAVCALSEENVGSQFVDQTV-SSLRTFLKSTR---------------------VVLRF 321 (898)
T ss_pred HHHHHH---hcCcchhhhHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhcch---------------------HHHHH
Confidence 444333 26666678888888888887555 888776653 33444453321 11122
Q ss_pred hhhchhhHHhhhhcCCCCcchhh-hHHHHHHHhhcccccccccchhhhHHHHHHhh--hchhhHHHhHHHHHHHhhcCCC
Q 001018 838 ATMGVLPLLLAGVLGAPSKHDQL-ADYLRKLLVEGTMKENHTVKCNAEIVNAVRFL--CTFEEHHTMVFNILWEMVVSSN 914 (1188)
Q Consensus 838 ~~~~lLP~il~gVL~~~~~~~~l-~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~L--g~~e~~~~~iLpiL~~lv~D~~ 914 (1188)
+.+.+|..+.- .-| +.-.. ..-+..|+.+.+-. ++ ..||.-| .+.+..++.++..+-.++.|-+
T Consensus 322 sA~Riln~lam-~~P---~kv~vcN~evEsLIsd~Nr~-------Is--tyAITtLLKTGt~e~idrLv~~I~sfvhD~S 388 (898)
T COG5240 322 SAMRILNQLAM-KYP---QKVSVCNKEVESLISDENRT-------IS--TYAITTLLKTGTEETIDRLVNLIPSFVHDMS 388 (898)
T ss_pred HHHHHHHHHHh-hCC---ceeeecChhHHHHhhccccc-------ch--HHHHHHHHHcCchhhHHHHHHHHHHHHHhhc
Confidence 22222222111 111 00000 01345555553322 22 3455333 1357888888888888888888
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhHHH-hhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-
Q 001018 915 IDMKINAANLLKVIVPYINAKVTSMQVLPALV-TLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGS- 992 (1188)
Q Consensus 915 pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv-~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~- 992 (1188)
-+-+.-++..+..+.-.|..+|.+ ++--|. -|.+..-+..+-++++||..+.+...+ -.++.+..+-.|.+|..
T Consensus 389 D~FKiI~ida~rsLsl~Fp~k~~s--~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey 464 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFPSKKLS--YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEY 464 (898)
T ss_pred cCceEEeHHHHHHHHhhCcHHHHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcch
Confidence 888888999999999889888774 444444 367788999999999999888865421 12344444556888876
Q ss_pred hhHHHHHHHHHHHhcccCCH--HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHH
Q 001018 993 HEATVAVVRALAVAVPHTTE--RLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAI 1070 (1188)
Q Consensus 993 ~~vR~~vv~al~~l~p~~~~--~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L 1070 (1188)
|.+.+.++.-|++-+|..+. .++.+|+..++- -+|+- |-.. ..|++.... ..+...+.+.+.-.|
T Consensus 465 ~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL---EN~iv-----RsaA----v~aLskf~l-n~~d~~~~~sv~~~l 531 (898)
T COG5240 465 HQITVRILGILGREGPRAKTPGKYVRHIYNRLIL---ENNIV-----RSAA----VQALSKFAL-NISDVVSPQSVENAL 531 (898)
T ss_pred hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---hhhHH-----HHHH----HHHHHHhcc-CccccccHHHHHHHH
Confidence 48889999999999998843 555577776543 34441 3222 233433331 223334555666777
Q ss_pred HHHHhccC
Q 001018 1071 QNLLKDAD 1078 (1188)
Q Consensus 1071 ~~L~~D~d 1078 (1188)
+..++|.|
T Consensus 532 kRclnD~D 539 (898)
T COG5240 532 KRCLNDQD 539 (898)
T ss_pred HHHhhccc
Confidence 77777776
No 113
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=85.72 E-value=1.3e+02 Score=39.31 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=78.1
Q ss_pred hHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhh--hchhhhhhhhhhHHHhhccCCC--cchHHHHHHHHHHHHHh-hch
Q 001018 901 MVFNILWEMVVSS--NIDMKINAANLLKVIVPY--INAKVTSMQVLPALVTLGSDQN--LNVKYASIDAFGAVAQH-FKN 973 (1188)
Q Consensus 901 ~iLpiL~~lv~D~--~pnVR~naak~L~~L~~~--ig~~~ls~~VlPaLv~LasD~d--~dVR~aaieAl~~LA~~-l~~ 973 (1188)
.++||+.+++... .+++-+.++-.++.++-- ...-++..-++|+|+.|.+... -..=.-++.+|..+..+ -+-
T Consensus 533 ~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr 612 (708)
T PF05804_consen 533 NLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR 612 (708)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH
Confidence 6888888888644 347888888877776532 2223456788999999887665 33444455666666654 233
Q ss_pred HHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH
Q 001018 974 DMIV--DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD 1016 (1188)
Q Consensus 974 e~~~--ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~ 1016 (1188)
+.+. .++...+..++.|+|..+|-.+=.+|-.++.. +.+|-.
T Consensus 613 ~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~-d~~w~~ 656 (708)
T PF05804_consen 613 EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY-DEEWAE 656 (708)
T ss_pred HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 3333 45777888899999999999998888887754 444433
No 114
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.56 E-value=6.7 Score=46.08 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=87.5
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--hchhhhh--hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc--h
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY--INAKVTS--MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK--N 973 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~--ig~~~ls--~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~--~ 973 (1188)
.--+|+|.++++...++||.-....+.-|+-- --..+++ ..++|+|+.|..|++..|+.-+--|+.-++.+-. -
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 33579999999999999999888877766421 1112333 4499999999999999999999999999997532 2
Q ss_pred HHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHhhcCCC
Q 001018 974 DMIVDKIRVQMDAFLEDGSHE---ATVAVVRALAVAVPHTTERLRD--YLLSKIFQLSAVPS 1030 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~D~~~~---vR~~vv~al~~l~p~~~~~~r~--~IlP~L~~L~~vpN 1030 (1188)
+.+..--.|.+..++.|+.-- ..+.|++.++ +.|.-..-.++ |+.|.+--|...-|
T Consensus 287 eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSPMGPLILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred HHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc-cccCcccceecccchhHHHHHHhcCCc
Confidence 233344678888899887543 3444444433 33333333445 67776655554333
No 115
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.96 E-value=7.2 Score=48.93 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=85.3
Q ss_pred HHHHHHHHhhcCC----CHHHHHHHHHHHHHHHHHh--Cch----hhHhhHHHHHHHHhh----cCchhHHHHHHHHHHH
Q 001018 502 SLTHTLFNLIKRP----DEKQRRIIMDACVTLAKNV--GEM----RTEMELLPQCWEQIN----HMYEERRLLVAQSCGE 567 (1188)
Q Consensus 502 ~Ll~ll~nLiKdd----dp~vRr~aa~~l~~iA~~l--g~e----rt~~ELLP~l~eli~----Dd~dEVRlLvAescg~ 567 (1188)
+++..|+.|++++ .+..|..++-+.+.++... ... ....+++|++.+.+. ++..+.+++...++|.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 6677778888764 6677777777777777632 222 234678888866443 2344457788888888
Q ss_pred HHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCC--ChhHHHHHHHhh
Q 001018 568 LAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDP--SGVVVETTFKEL 643 (1188)
Q Consensus 568 La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~--s~~Vr~aa~~~L 643 (1188)
++.- .-...+.|.+. -...-+..||-+|+.+|..++...+. .+.+.++++..|. ..+||.+|+-.+
T Consensus 473 ~g~~----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 473 AGHP----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred cCCh----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 6532 11122233332 12344789999999999988876655 3666666666665 678999995544
No 116
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.48 E-value=5.5 Score=48.45 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=87.3
Q ss_pred hHHHHHHH-hhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHH---HhhccCCCcchHHHHHHHHHHHHHhhc---h
Q 001018 901 MVFNILWE-MVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPAL---VTLGSDQNLNVKYASIDAFGAVAQHFK---N 973 (1188)
Q Consensus 901 ~iLpiL~~-lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaL---v~LasD~d~dVR~aaieAl~~LA~~l~---~ 973 (1188)
.++..+.. +..|.+-+|=+.+++.|..+.+.+...-+....+|.- .+|-.|.+..+|++++..++.|+.-.| .
T Consensus 299 ~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 299 TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 33433333 3444568899999999999999988888888888764 467889999999999999999998765 3
Q ss_pred HHHHHHHHHHHHHH---hcCCChhHHHHHHHHHHHhcccCCH
Q 001018 974 DMIVDKIRVQMDAF---LEDGSHEATVAVVRALAVAVPHTTE 1012 (1188)
Q Consensus 974 e~~~ekl~~~~~sl---L~D~~~~vR~~vv~al~~l~p~~~~ 1012 (1188)
++|.+++.--+..| ++|+++.+-.+|=..+....|++.-
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r 420 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR 420 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH
Confidence 57888777666665 7889988888887788777777743
No 117
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.37 E-value=32 Score=41.10 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 001018 499 TRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKN 532 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~ 532 (1188)
.-++-+.-.+++|.|+|..+||.|++++..+++-
T Consensus 58 la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 58 LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 5566778889999999999999999999999873
No 118
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.70 E-value=8.1 Score=47.61 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=86.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhC--chhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHH
Q 001018 506 TLFNLIKRPDEKQRRIIMDACVTLAKNVG--EMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILS 583 (1188)
Q Consensus 506 ll~nLiKdddp~vRr~aa~~l~~iA~~lg--~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~ 583 (1188)
+...|..|.++-.|-+-+=.++. ..+| ...+...|||+ .++|-.|-||-.++-++|-+. -.. ..++.+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~al--Ay~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc----~~D-~~~lv~ 589 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLAL--AYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVC----CDD-RDLLVG 589 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHH--HHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeE----ecC-cchhhH
Confidence 44556677888877764422221 2233 34555667774 467777888888777666432 112 245688
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHH
Q 001018 584 IVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTF 640 (1188)
Q Consensus 584 ~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~ 640 (1188)
.++-|.+.-.+-||+.+|-.|+..|+.-++. -...++-.|+.|+.+-||..|.
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~Am 642 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAM 642 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHH
Confidence 8899999999999999999999999988776 5677888999999999998873
No 119
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.65 E-value=18 Score=44.89 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=108.9
Q ss_pred HHHHHHhhhcccchhcchhhHHhHhh-----HHHH-HhhcCCChhhHHHHHH-HHHH---hhcCCCHHHHHHHHHHHHHH
Q 001018 460 TIQILADALPKIVPYVLINHREELLP-----LIMC-AIERHPDTSTRDSLTH-TLFN---LIKRPDEKQRRIIMDACVTL 529 (1188)
Q Consensus 460 ~v~lls~~lP~Ivp~V~~~~R~ellP-----li~~-aa~~h~~~~~R~~Ll~-ll~n---LiKdddp~vRr~aa~~l~~i 529 (1188)
+-.-|+..+-++|..+++=+|.+-+| ++.+ .+|..+++..-.++.+ +|.. -...++-.||....+-+..+
T Consensus 39 t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~ 118 (885)
T COG5218 39 TAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALL 118 (885)
T ss_pred HHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHH
Confidence 44557777778888888878766544 3333 3457775544333332 2222 23567888998888888888
Q ss_pred HHHhCc--hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHH-hhcCCcHHHHHHHHHHHHh
Q 001018 530 AKNVGE--MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQ-LVEDSATVVREAAARNLAL 606 (1188)
Q Consensus 530 A~~lg~--ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~Lqq-L~eD~e~~VR~aAAksL~~ 606 (1188)
...+|+ +..-.-|+--+.+-+=|.+.-||+-++-++..+.+.-+.++.. +..+|.. +--|++.+||++|.-++..
T Consensus 119 ~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~--~~n~l~~~vqnDPS~EVRr~allni~v 196 (885)
T COG5218 119 SDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR--IVNLLKDIVQNDPSDEVRRLALLNISV 196 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--HHHHHHHHHhcCcHHHHHHHHHHHeee
Confidence 888887 6666666666666666788889998888888888765554322 1223333 3458899999888755432
Q ss_pred hcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHH
Q 001018 607 LLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAV 647 (1188)
Q Consensus 607 l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpal 647 (1188)
++ .-.|+.+.=.+|-+..-|.+.+..++|.+
T Consensus 197 -----dn-----sT~p~IlERarDv~~anRr~vY~r~Lp~i 227 (885)
T COG5218 197 -----DN-----STYPCILERARDVSGANRRMVYERCLPRI 227 (885)
T ss_pred -----CC-----CcchhHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 11 12344444455555555555555554544
No 120
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=82.49 E-value=71 Score=38.35 Aligned_cols=230 Identities=18% Similarity=0.167 Sum_probs=117.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhh
Q 001018 769 PEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLA 848 (1188)
Q Consensus 769 ~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~ 848 (1188)
.|.--.||.-+++-+|.+|.. ++ ...+.|...++|.-. .+.+|=..+.+|.+..+...+|.+..
T Consensus 71 ed~d~~ir~qaik~lp~fc~~---d~-~~rv~d~l~qLLnk~------------sl~~Lf~~~~~~D~~irek~l~fi~t 134 (460)
T KOG2213|consen 71 EDDDVGIRRQAIKGLPLFCKG---DA-LSRVNDVLVQLLNKA------------SLTGLFGQIEVGDEQIREKVLKFIRT 134 (460)
T ss_pred cccchhhHHHHHhccchhccC---ch-hhhhHHHHHHHHHHH------------HHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 666667888888888888876 33 334466666666421 12222222333544555566888888
Q ss_pred hhcCCCCcchhhhHHHHHHHhhcccccccccchhh-hHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 001018 849 GVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNA-EIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKV 927 (1188)
Q Consensus 849 gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p-~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~ 927 (1188)
.+++.. ..||..=+.. |+- ++-.++.-+.+ |.. ..+|.+|- .|+.
T Consensus 135 Kl~~l~------~e~L~kevE~----------~iv~eikkal~dVtg-eef-~lfm~~L~----------------~lk~ 180 (460)
T KOG2213|consen 135 KLITLK------GEVLTKEVER----------HIVDEIKKALEDVTG-EEF-TLFMDILA----------------SLKS 180 (460)
T ss_pred Hhhccc------HHHhhhHHHH----------HHHHHHHHHHHhccH-HHH-HHHHHHHH----------------hhhc
Confidence 788765 1133211110 110 11222222211 111 22333332 2322
Q ss_pred HHhhhchhhhhhhhhhHHHhh-------ccCCCcchHHHHH--HHHHHHHHhhchH----HHHHHHHHHHHHHhcCCC-h
Q 001018 928 IVPYINAKVTSMQVLPALVTL-------GSDQNLNVKYASI--DAFGAVAQHFKND----MIVDKIRVQMDAFLEDGS-H 993 (1188)
Q Consensus 928 L~~~ig~~~ls~~VlPaLv~L-------asD~d~dVR~aai--eAl~~LA~~l~~e----~~~ekl~~~~~slL~D~~-~ 993 (1188)
+..+-|..-+ +.+.--..++ .+|+++-=|+-.. .|.|-.|...... .+.+++.|. ..|.- -
T Consensus 181 ~~~k~~~a~l-qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~----~fdkl~e 255 (460)
T KOG2213|consen 181 LQTKAGEARL-QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH----HFDKLTE 255 (460)
T ss_pred ccCCCCHHHH-HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc----ccccchH
Confidence 2222222211 1111112222 3466655565322 2334444322222 334555555 23321 2
Q ss_pred hHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHHHHHHHhhc
Q 001018 994 EATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA--VPSSSSDVMRRRERANAFCESIRALD 1053 (1188)
Q Consensus 994 ~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~--vpN~~~~~~~R~~vAk~l~~a~~aL~ 1053 (1188)
.....++++|+.+.|.++.+....++|.+..+-. .|-.......-|..+.+++.+...|-
T Consensus 256 ~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 256 ERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999988777789998888876 33332222334577788888877765
No 121
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=17 Score=44.41 Aligned_cols=139 Identities=19% Similarity=0.137 Sum_probs=98.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhh----HHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhh
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEME----LLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDS 579 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~E----LLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~s 579 (1188)
...+-+=.+||+...|++++.+++..|.. -|..+++. |.-.+..+.++...+|-+-+..++..+.+.+....-.+
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~ 338 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES 338 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence 33444456889999999999999999986 36666655 33333556676778898888888877777665544444
Q ss_pred hhHHHH---HHhhcCCcHHHHHHHHHHHHhhcccCCCchh---hhhHHH---HHHHhccCCChhHHHHHHHhh
Q 001018 580 LILSIV---QQLVEDSATVVREAAARNLALLLPLFPNTDK---YFKVED---LMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 580 lLL~~L---qqL~eD~e~~VR~aAAksL~~l~~~l~~~d~---~~qi~~---~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.++++- .++-+|+-+.+|.++..-|+.++++.+..-+ ..++.. .|.--++|+++.|..|....+
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 555553 5688999999999999999999988876532 223332 233456799999988885554
No 122
>PHA02629 A-type inclusion body protein; Provisional
Probab=82.23 E-value=1.1 Score=38.02 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.9
Q ss_pred hhhhhhHHHHhhhhHHHHHHHH
Q 001018 82 EKLAITEYELRLAQEDVTKLKA 103 (1188)
Q Consensus 82 ekvavle~ELR~a~e~I~~Lr~ 103 (1188)
.++||||-|||+.-|||+.|..
T Consensus 33 k~iavleaelr~~metik~lek 54 (61)
T PHA02629 33 KIIAVLEAELRKSMETIKALEK 54 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999853
No 123
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=81.80 E-value=16 Score=43.12 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=74.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC-------chhHHHHHHHHHHHHH--hhhChhhhhh
Q 001018 509 NLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM-------YEERRLLVAQSCGELA--EFVRPEIRDS 579 (1188)
Q Consensus 509 nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd-------~dEVRlLvAescg~La--~~vg~e~r~s 579 (1188)
+.|.++++..|..|++.+ ..+---..|+|+|-..+.+. ..++...+..-..+|. +++.-+-+.+
T Consensus 185 ~a~~~~~~~~r~~aL~sL-------~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh 257 (343)
T cd08050 185 EALVGSNEEKRREALQSL-------RTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH 257 (343)
T ss_pred HHHhCCCHHHHHHHHHHh-------ccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH
Confidence 344557777787766443 33444577899886655521 1223333333333333 5555677778
Q ss_pred hhHHHHHH------hh----cCCcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChh
Q 001018 580 LILSIVQQ------LV----EDSATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGV 634 (1188)
Q Consensus 580 lLL~~Lqq------L~----eD~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~ 634 (1188)
.|+|++-. ++ .+..|..|+-||+-++.||..++... ....+...+...+.|+...
T Consensus 258 ~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~ 324 (343)
T cd08050 258 QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKP 324 (343)
T ss_pred HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCC
Confidence 88888865 23 36889999999999999999998763 2334555555555565443
No 124
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=81.76 E-value=10 Score=44.28 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=124.8
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch---hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA---KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~---~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
+.......+|+|-++.+...|+|=.-+.=.+.-|+..-.. -.+..-+-+.|++|.+.++..|.--++.++|-+.+
T Consensus 237 ~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT-- 314 (526)
T COG5064 237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT-- 314 (526)
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee--
Confidence 4567788999999999998898887777666666443211 24455677889999999999997777777766554
Q ss_pred chH-----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCCCChhhHHHHHHH
Q 001018 972 KND-----MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPSSSSDVMRRRERA 1042 (1188)
Q Consensus 972 ~~e-----~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vA 1042 (1188)
|.+ .+.--.++.+.++|+.+--++|-+++-+++-|...... .+++ .++|-|..+.++.-+ -.|.|.
T Consensus 315 G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~----k~kKEA- 389 (526)
T COG5064 315 GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY----KIKKEA- 389 (526)
T ss_pred cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH----HHHHHH-
Confidence 222 22233567777889888789999999999998665543 4677 788988888765544 123344
Q ss_pred HHHHHHHHhhc-cccCchh----hhhhhHHHHHHHHHhccCC-CChHHHHHHHHHHh
Q 001018 1043 NAFCESIRALD-ATELSAT----SVRDFLLPAIQNLLKDADS-LDPAHKEALEIIMK 1093 (1188)
Q Consensus 1043 k~l~~a~~aL~-~~~l~~~----~v~~~ilP~L~~L~~D~d~-l~~~~k~~l~~i~k 1093 (1188)
|.|+.... .+.--++ +|++-++-.|..|+.=.|- ...-.-..++.|+|
T Consensus 390 ---CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 390 ---CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred ---HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 77776644 2322222 3444455556666654453 33344556666663
No 125
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.46 E-value=65 Score=36.01 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=98.2
Q ss_pred HHHHHHhhhchh-hHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh---------hccCCCc
Q 001018 885 IVNAVRFLCTFE-EHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT---------LGSDQNL 954 (1188)
Q Consensus 885 ll~ai~~Lg~~e-~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~---------LasD~d~ 954 (1188)
++.+++.+|..+ .....++.++..|+..+....+.-+.+.+..+-..=+.- . ..+.+.+.. ...+..|
T Consensus 21 ~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f-~~L~~~L~~~~~r~~~~~~~~~~~~ 98 (234)
T PF12530_consen 21 LLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-F-PFLQPLLLLLILRIPSSFSSKDEFW 98 (234)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-H-HHHHHHHHHHHhhcccccCCCcchH
Confidence 577778888766 888889999999999888888777777777775442211 1 333444433 3467788
Q ss_pred chHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHhcccCCHHHHH--HHHHHHHHhhcCCCC
Q 001018 955 NVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFL-EDGSHEATVAVVRALAVAVPHTTERLRD--YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 955 dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL-~D~~~~vR~~vv~al~~l~p~~~~~~r~--~IlP~L~~L~~vpN~ 1031 (1188)
.+.+++.-++-.+++.... --..+.+.+..++ ++.+..++-..+.++..+. +.++++ ...-.|.+-.
T Consensus 99 ~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc---~~~vvd~~s~w~vl~~~l----- 168 (234)
T PF12530_consen 99 ECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC---EAEVVDFYSAWKVLQKKL----- 168 (234)
T ss_pred HHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHhc-----
Confidence 9989877777667665433 1123566677777 6777676666666666665 444444 1222222211
Q ss_pred ChhhHHHHHHHHHHHHHHHhhccc
Q 001018 1032 SSDVMRRRERANAFCESIRALDAT 1055 (1188)
Q Consensus 1032 ~~~~~~R~~vAk~l~~a~~aL~~~ 1055 (1188)
+..+|-.+++++++.+..+...
T Consensus 169 --~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 169 --SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred --CCccchHHHHHHHHHHHHhccc
Confidence 1234667888777777655533
No 126
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.36 E-value=14 Score=45.92 Aligned_cols=118 Identities=21% Similarity=0.226 Sum_probs=70.1
Q ss_pred ceeccccccCCC------CCCCCCCCCCCChHHHHHHHHhhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhh
Q 001018 171 AMTFYEEVTDQN------LDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKE 244 (1188)
Q Consensus 171 sitf~dE~~dqd------~e~W~dv~~~~P~~L~~~yr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (1188)
..+|....+..+ -|+|.|.=.-+|.+-.. ... .-.+.+|++.|++.+..|+.+...+.+..+
T Consensus 107 pFqf~~~~p~eeLvtle~e~~~~DmLvV~~ka~~l----------Q~q--lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~ 174 (546)
T PF07888_consen 107 PFQFRAPKPLEELVTLEDEDGNSDMLVVTTKAQLL----------QNQ--LEECQKEKEELLKENEQLEEEVEQLREEVE 174 (546)
T ss_pred CcccCCCCccccceeecccCCCcceEEEehhHHHH----------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666554333 25677774555644221 000 112345666677777777776666666656
Q ss_pred cchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 245 ISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
-...++....+.++.++...++.....+.++++.+.+..++.+.+..|..|...|.
T Consensus 175 ~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 175 RLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666777766666666666677766655444
No 127
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.14 E-value=8.7 Score=47.68 Aligned_cols=169 Identities=19% Similarity=0.184 Sum_probs=117.5
Q ss_pred ccchhcchhhHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCC--CHHHHHHHHHHH---HHHHHHhCch---hhHhh
Q 001018 470 KIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRP--DEKQRRIIMDAC---VTLAKNVGEM---RTEME 541 (1188)
Q Consensus 470 ~Ivp~V~~~~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdd--dp~vRr~aa~~l---~~iA~~lg~e---rt~~E 541 (1188)
.-.|.+.+..|.-+++++.+....-. .-...+++.++-+..+ +.-.|..+++-+ ..+..+.++. ..+.-
T Consensus 290 ~~~~pa~~~lq~kIL~~L~kS~~Aa~---~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~ 366 (501)
T PF13001_consen 290 NGRPPASPRLQEKILSLLSKSVIAAT---SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPV 366 (501)
T ss_pred cCCCCCCHHHHHHHHHHHHHhHHHHh---CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHH
Confidence 55667888899999999875422111 1135677778877777 678888888888 8888888863 44555
Q ss_pred HHHHHHHHhh--------cCchhHHHHHHHHHHHHHhhhChh--hhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccC
Q 001018 542 LLPQCWEQIN--------HMYEERRLLVAQSCGELAEFVRPE--IRDSLILSIVQQLVEDSATVVREAAARNLALLLPLF 611 (1188)
Q Consensus 542 LLP~l~eli~--------Dd~dEVRlLvAescg~La~~vg~e--~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l 611 (1188)
|+...|..++ .+..+.|-++=|++|.|++-...- ..-+++--.|..| +++.+.||-++-++|..++..+
T Consensus 367 i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 367 ILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHH
Confidence 7777788773 246778888999999999776542 3345556666667 9999999999999999999988
Q ss_pred CCchh------hhhHHHHHHHhccCCChhHHHHHHHh
Q 001018 612 PNTDK------YFKVEDLMFQLVCDPSGVVVETTFKE 642 (1188)
Q Consensus 612 ~~~d~------~~qi~~~f~~Ll~D~s~~Vr~aa~~~ 642 (1188)
.+... ...+.-+......+....+|-+|++.
T Consensus 446 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~ 482 (501)
T PF13001_consen 446 KDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKY 482 (501)
T ss_pred hccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 65322 11223333344455566677777543
No 128
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.65 E-value=33 Score=45.93 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=85.9
Q ss_pred hhhHHHhHHHHHHHhhc----CCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHH
Q 001018 895 FEEHHTMVFNILWEMVV----SSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~----D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~ 969 (1188)
...+...+.|++.++.. ...|.++-+|.-.|.++.. +..+.... =+|.|.+..+ -|+..||-.+.-|++-+|-
T Consensus 913 ek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~fces-~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 913 EKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred hHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHHHHH-HHHHHHHHHhcCCCceeeecchheccchhh
Confidence 46678899999999984 4469999999999999874 34455544 4678887555 9999999999999999997
Q ss_pred hhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 970 HFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 970 ~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
.+.. +.|.--+.+-.-|.|.+..+|-+++..++-|+
T Consensus 991 ~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 991 RFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred hccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 6654 33445555666788999999999999999876
No 129
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.61 E-value=3e+02 Score=38.59 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=54.6
Q ss_pred hHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHH
Q 001018 479 HREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERR 558 (1188)
Q Consensus 479 ~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVR 558 (1188)
.|+-.+-|+.|-+..+++ .-.+.-.++.+=+.|+..+||.-+++-+-.|...-+.=-...++.--+..-++|+++.|.
T Consensus 871 VREAaldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred HHHHHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHH
Confidence 344455555555444442 333455566677889999999988888888776554322233332222334677777788
Q ss_pred HHHHHHHHHHH
Q 001018 559 LLVAQSCGELA 569 (1188)
Q Consensus 559 lLvAescg~La 569 (1188)
=|+-|.+-.+.
T Consensus 949 kLv~etf~klW 959 (1692)
T KOG1020|consen 949 KLVRETFLKLW 959 (1692)
T ss_pred HHHHHHHHHHh
Confidence 88888776655
No 130
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.42 E-value=1.3e+02 Score=34.39 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=46.9
Q ss_pred hhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh
Q 001018 892 LCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT 947 (1188)
Q Consensus 892 Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~ 947 (1188)
|+........++|.+++-+.++.++|+.-+.++|....+..|.+.+..++.+.-..
T Consensus 199 l~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 199 LSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred hcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 44456677899999999999999999999999999999999998877766655433
No 131
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.32 E-value=63 Score=37.89 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHH
Q 001018 516 EKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATV 595 (1188)
Q Consensus 516 p~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~ 595 (1188)
|++|..+++.+..+-..--.....+.|+|++. .+-.+..+....++++.=..+++.+.- .-+...+..-+.|+.+-
T Consensus 1 ad~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~---KE~nE~aL~~~l~al~~~~~~~~~~~~-~~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPSSSLSSKIVQGLSPLLS---KESNEAALSALLSALFKHLFFLSSELP-KKVVDAFKKGLKDKKPP 76 (339)
T ss_pred CcHHHHHHHHHHhCCCcchHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHhCcCCC-HHHHHHHHHHhcCCCCc
Confidence 45677777666655431112334444555432 334577788888888877777744443 34588889988888888
Q ss_pred HHHHHHHHHHhhcc
Q 001018 596 VREAAARNLALLLP 609 (1188)
Q Consensus 596 VR~aAAksL~~l~~ 609 (1188)
||..-...++.++.
T Consensus 77 vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 77 VRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988776
No 132
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=77.87 E-value=1.7e+02 Score=35.28 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=81.8
Q ss_pred CCChhHHHHHHHHHHHHHhhhchhhh---hhhhhhHHHhhccC--CCcchHHHHHHHHHHHHHhh-----c---------
Q 001018 912 SSNIDMKINAANLLKVIVPYINAKVT---SMQVLPALVTLGSD--QNLNVKYASIDAFGAVAQHF-----K--------- 972 (1188)
Q Consensus 912 D~~pnVR~naak~L~~L~~~ig~~~l---s~~VlPaLv~LasD--~d~dVR~aaieAl~~LA~~l-----~--------- 972 (1188)
......|-+|+..+..+++..+.... .+.|--.|.+.++| .||+-|-+++..++.|+... |
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 34678999999999999998876533 22222233333334 58999999999999999643 1
Q ss_pred -hHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCC
Q 001018 973 -NDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 973 -~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~vpN~ 1031 (1188)
.++|...|.|-+. --....+.++-.+++.+...-..++++....++|.+..+-..+++
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCc
Confidence 2466788888776 222346789999999999999889888777899999988877776
No 133
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=77.04 E-value=14 Score=44.13 Aligned_cols=65 Identities=20% Similarity=0.108 Sum_probs=39.6
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHH
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAF 964 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl 964 (1188)
...+|+|-|. --.+..|-+|..+++-+...-..+..+.+. .++|.++....+++.-|+-+|.-|+
T Consensus 306 f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 4466666665 344566777777777777777776655443 4777777777777777776665543
No 134
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.38 E-value=11 Score=50.22 Aligned_cols=123 Identities=21% Similarity=0.184 Sum_probs=88.6
Q ss_pred HHHHhhcCCChhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHH
Q 001018 487 IMCAIERHPDTSTRD--SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLV 561 (1188)
Q Consensus 487 i~~aa~~h~~~~~R~--~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLv 561 (1188)
+.++++....+.-+. .++.-+|...+.+.+.+|.+++++++.+++.... ..+.+.++|.+ +|-..-+|-..
T Consensus 799 vf~s~~~~m~s~l~~~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll----~~~~~~~~r~~ 874 (1549)
T KOG0392|consen 799 VFNSLAPLMHSFLHPLGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLL----GDLDKFVRRQG 874 (1549)
T ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchhhHhhhhh
Confidence 345666544444454 6677788889999999999999999999886553 34566677743 33445555555
Q ss_pred HHHHHHHHhh---hChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC
Q 001018 562 AQSCGELAEF---VRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN 613 (1188)
Q Consensus 562 Aescg~La~~---vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~ 613 (1188)
|+....+... ++-.-+..+|.++|-..+.|.-..||.||.+.|+.+.+.++-
T Consensus 875 a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 875 ADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 5555444433 223456778999999999999999999999999999888753
No 135
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=75.06 E-value=1.3e+02 Score=32.52 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=57.2
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPY--INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~--ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
.+..++-++++..++.+.||..++..++.+... +.+ .+.+|.|+.|.+||+..+|-.|...+..+.+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 456777788899999999999999999988653 222 357999999999999999999999988887643
No 136
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.90 E-value=23 Score=44.76 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhhhCh-h-------hhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc-h
Q 001018 545 QCWEQINHMYEERRLLVAQSCGELAEFVRP-E-------IRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT-D 615 (1188)
Q Consensus 545 ~l~eli~Dd~dEVRlLvAescg~La~~vg~-e-------~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~-d 615 (1188)
++.++.+..+--.|-.+.|.|+.++...-. + ..-..|+..+..=..|-.|-+|++|.+-+.+|+..-... -
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~ 382 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG 382 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence 345677878888999999999999855322 1 123346777777778999999999999999998764433 2
Q ss_pred hhhhHHHHHHHhccCCChhHHHHHHHhhH
Q 001018 616 KYFKVEDLMFQLVCDPSGVVVETTFKELL 644 (1188)
Q Consensus 616 ~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Ll 644 (1188)
...++..+...-++|-+..||.-|++.+.
T Consensus 383 ~r~ev~~lv~r~lqDrss~VRrnaikl~S 411 (1128)
T COG5098 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCS 411 (1128)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45578889999999999999999998873
No 137
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.67 E-value=68 Score=40.03 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=105.0
Q ss_pred hHhhHHH--HHhhcCCChhhHHHHHHHHH----HhhcCCCHHHHH----HHHHHHHHHHHHhCchhhHhhHHHHHHHHhh
Q 001018 482 ELLPLIM--CAIERHPDTSTRDSLTHTLF----NLIKRPDEKQRR----IIMDACVTLAKNVGEMRTEMELLPQCWEQIN 551 (1188)
Q Consensus 482 ellPli~--~aa~~h~~~~~R~~Ll~ll~----nLiKdddp~vRr----~aa~~l~~iA~~lg~ert~~ELLP~l~eli~ 551 (1188)
+++|++- .....|++-.+-..-.++.. .+.+++++.-|- .+.+-+..+..++--...+..+.+ -+
T Consensus 288 ~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~E-----e~ 362 (559)
T KOG2081|consen 288 EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPE-----EE 362 (559)
T ss_pred cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCcc-----ch
Confidence 7777662 33344554433222223322 345666666554 233333334444432222222222 13
Q ss_pred cCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhc-CCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccC
Q 001018 552 HMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVE-DSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCD 630 (1188)
Q Consensus 552 Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~e-D~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D 630 (1188)
++.-+-|+.+++.+...+-.+|+.+.-+. ++..+-+ ..+|++=+|+...+..+++.++.+. +.+.|-.+++++.
T Consensus 363 ~~f~~fR~~v~dvl~Dv~~iigs~e~lk~---~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~n 437 (559)
T KOG2081|consen 363 SEFFEFRLKVGDVLKDVAFIIGSDECLKQ---MYIRLKENNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICN 437 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcHHHHHH---HHHHHccCCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhC
Confidence 45567899999999999999998876555 4555555 7899999999999999999987652 2455555555543
Q ss_pred --CChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHH
Q 001018 631 --PSGVVVETTFKELLPAVINWGSKLDHILRVLLSYI 665 (1188)
Q Consensus 631 --~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L 665 (1188)
.+..||.+++..+ ..|..|...-...+.-++..+
T Consensus 438 lp~Q~~~~~ts~ll~-g~~~ew~~~~p~~le~v~~~~ 473 (559)
T KOG2081|consen 438 LPEQAPLRYTSILLL-GEYSEWVEQHPELLEPVLRYI 473 (559)
T ss_pred CccchhHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHH
Confidence 3667888887666 899999864433333333333
No 138
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.49 E-value=48 Score=38.71 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCch
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYE 555 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~d 555 (1188)
.+.-++.+++++.|.||.+|++.+..+-.. |- -.-...+++-+.+++.+...
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc
Confidence 345577889999999999999888777543 21 12234577777777776554
No 139
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=74.00 E-value=1e+02 Score=35.08 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=94.9
Q ss_pred CCChhHHHHHHHHHHHHHhh-hchhhh-hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHh
Q 001018 912 SSNIDMKINAANLLKVIVPY-INAKVT-SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND-MIVDKIRVQMDAFL 988 (1188)
Q Consensus 912 D~~pnVR~naak~L~~L~~~-ig~~~l-s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e-~~~ekl~~~~~slL 988 (1188)
...|.++..+...+...+.. +..+.+ .--.+|.+..|..||+..||..++.|+.-++...... .+..-+...|....
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 34566777776666665443 333333 3368899999999999999988888887776543322 22222233333333
Q ss_pred cCC-ChhHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccc-cCchhhhhhh
Q 001018 989 EDG-SHEATVAVVRALAVAVPHTTE-RLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDAT-ELSATSVRDF 1065 (1188)
Q Consensus 989 ~D~-~~~vR~~vv~al~~l~p~~~~-~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~-~l~~~~v~~~ 1065 (1188)
.++ +-.+.++.++.|..+.=.-+- ..+...+|.+..|-..-|. .-|+.+-+ ++--|++. ....++++.+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~----~~k~~vLk----~L~nLS~np~~~~~Ll~~q 175 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSE----KTKVQVLK----VLVNLSENPDMTRELLSAQ 175 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCCh----HHHHHHHH----HHHHhccCHHHHHHHHhcc
Confidence 333 567888889999988422111 2222345666666554443 22545533 34446654 3467888888
Q ss_pred HHHHHHHHHhc
Q 001018 1066 LLPAIQNLLKD 1076 (1188)
Q Consensus 1066 ilP~L~~L~~D 1076 (1188)
.++.+-.|.+.
T Consensus 176 ~~~~~~~Lf~~ 186 (254)
T PF04826_consen 176 VLSSFLSLFNS 186 (254)
T ss_pred chhHHHHHHcc
Confidence 88888888873
No 140
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.00 E-value=19 Score=34.70 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=37.5
Q ss_pred hhccCCCcchHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccC
Q 001018 947 TLGSDQNLNVKYASIDAFGAVAQHFK-NDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 947 ~LasD~d~dVR~aaieAl~~LA~~l~-~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
+..+||..-||-..+--+..+...-. ...-.+++...+.+.+.|++.=|..+++++++.++...
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 33456666666666666655555444 22334566666666666666666666666666666444
No 141
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=73.78 E-value=18 Score=45.50 Aligned_cols=129 Identities=18% Similarity=0.140 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhh
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSL 580 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~sl 580 (1188)
..|...+-+..++.+...+.+++++++. +|...+...|.|++.. -..-...+|.+++.++..++....... ...
T Consensus 445 ~~l~~~l~~~~~~~~~~~~~~~LkaLGN----~g~~~~i~~l~~~l~~-~~~~~~~iR~~Av~Alr~~a~~~p~~v-~~~ 518 (574)
T smart00638 445 KYLHELLQQAVSKGDEEEIQLYLKALGN----AGHPSSIKVLEPYLEG-AEPLSTFIRLAAILALRNLAKRDPRKV-QEV 518 (574)
T ss_pred HHHHHHHHHHHhcCCchheeeHHHhhhc----cCChhHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHhCchHH-HHH
Confidence 3344444455556777788888888875 5667777778887651 122356899999999998887654444 344
Q ss_pred hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 581 ILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 581 LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+++++.+ ..+.++||-+|.-.|-.- -|+ +..+..+...+-.|++..|+....++|
T Consensus 519 l~~i~~n--~~e~~EvRiaA~~~lm~t---~P~---~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 519 LLPIYLN--RAEPPEVRMAAVLVLMET---KPS---VALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHcC--CCCChHHHHHHHHHHHhc---CCC---HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 5777744 346677999988654332 122 234555555667788888888765543
No 142
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=73.60 E-value=32 Score=40.77 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=87.8
Q ss_pred hhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCCh-hHH--HHHHHHHHHH------
Q 001018 858 DQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNI-DMK--INAANLLKVI------ 928 (1188)
Q Consensus 858 ~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~p-nVR--~naak~L~~L------ 928 (1188)
.++..|+.+++....-. -....-.++..|.. |.-...++|.|...+.+.+. ++. +.....+-++
T Consensus 174 ~Elq~yf~~It~a~~~~------~~~~r~~aL~sL~t-D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 174 KELQLYFEEITEALVGS------NEEKRREALQSLRT-DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHHHHhCC------CHHHHHHHHHHhcc-CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 34567888887743211 00001234444544 55556788888888765321 111 2222222222
Q ss_pred HhhhchhhhhhhhhhHHHhhc----------cCCCcchHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhcCCC--hh
Q 001018 929 VPYINAKVTSMQVLPALVTLG----------SDQNLNVKYASIDAFGAVAQHFKND--MIVDKIRVQMDAFLEDGS--HE 994 (1188)
Q Consensus 929 ~~~ig~~~ls~~VlPaLv~La----------sD~d~dVR~aaieAl~~LA~~l~~e--~~~ekl~~~~~slL~D~~--~~ 994 (1188)
++.+..+.---+++|++.+.. .|.+|..|.++...+..++..++.. .+..+|..++..-+-|+. ..
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~ 326 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLT 326 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcc
Confidence 222333444456778777643 4689999999999999999998765 577888877777666653 33
Q ss_pred HHHHHHHHHHHhccc
Q 001018 995 ATVAVVRALAVAVPH 1009 (1188)
Q Consensus 995 vR~~vv~al~~l~p~ 1009 (1188)
...=++.+|..+++.
T Consensus 327 ~~YGAi~GL~~lG~~ 341 (343)
T cd08050 327 THYGAIVGLSALGPE 341 (343)
T ss_pred hhhHHHHHHHHhCcc
Confidence 367777777777754
No 143
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=73.59 E-value=15 Score=46.49 Aligned_cols=132 Identities=24% Similarity=0.234 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhh
Q 001018 498 STRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIR 577 (1188)
Q Consensus 498 ~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r 577 (1188)
.....|...|.+...+.+...+.+++++|+.+ |-..+...|+|++.... +....+|++++.++..++... ++..
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~-~~~v 559 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----GHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHC-PEKV 559 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----T-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT--HHHH
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----CCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcC-cHHH
Confidence 34455666666666788889999999999876 44456666666543322 236889999999999886665 4444
Q ss_pred hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 578 DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
...+++++.+-.+| .+||-||..-|-. .-|.. ..+..+...+-.|++..|......+|
T Consensus 560 ~~~l~~I~~n~~e~--~EvRiaA~~~lm~---~~P~~---~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 560 REILLPIFMNTTED--PEVRIAAYLILMR---CNPSP---SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHH-TTS---HHHHHHHHHHHHH---T---H---HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--hhHHHHHHHHHHh---cCCCH---HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 45568888776654 4599998754332 22333 23444445566788888888776554
No 144
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.54 E-value=18 Score=47.65 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=81.9
Q ss_pred hhHHHhHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhchh-hh--hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 896 EEHHTMVFNILWEMVVS-SNIDMKINAANLLKVIVPYINAK-VT--SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D-~~pnVR~naak~L~~L~~~ig~~-~l--s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
.-+...++.+.++.++| +.|..|-=++-.|.+|=+-++.. |. ...---.|..+.+|+-..||.|++.||+.+....
T Consensus 594 acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 594 ACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 44557788899999998 48999999999999985554432 21 1112234667889999999999999999988742
Q ss_pred ----ch------H--------HHHHHHHH----HHHHHhcCCChhHHHHHHHHHHHhcccC
Q 001018 972 ----KN------D--------MIVDKIRV----QMDAFLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 972 ----~~------e--------~~~ekl~~----~~~slL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
.. + ...|++.. -+...+.|+.+.+|-+++-+++..+-..
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 10 0 11233333 4445689999999999999999876444
No 145
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.56 E-value=3.1e+02 Score=35.95 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=59.9
Q ss_pred HHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHH
Q 001018 568 LAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAV 647 (1188)
Q Consensus 568 La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpal 647 (1188)
|+...++ +-...+.|-++.|++-..+-||.+|+-+...+..-.|+ -...+.+-|..+++|...-|=.+++..+ -.+
T Consensus 131 lg~i~s~-EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hGVL~~~l~l~-~e~ 206 (866)
T KOG1062|consen 131 LGNICSP-EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHGVLIAGLHLI-TEL 206 (866)
T ss_pred hhccCCH-HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCceeeeHHHHH-HHH
Confidence 3343444 44555799999999999999999999999998877764 3557788899999999888877776555 444
Q ss_pred Hhc
Q 001018 648 INW 650 (1188)
Q Consensus 648 a~~ 650 (1188)
++-
T Consensus 207 c~~ 209 (866)
T KOG1062|consen 207 CKI 209 (866)
T ss_pred Hhc
Confidence 443
No 146
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.26 E-value=4.2e+02 Score=36.91 Aligned_cols=186 Identities=11% Similarity=0.101 Sum_probs=104.6
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh--hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH
Q 001018 897 EHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT--SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 897 ~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l--s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
++.-.++|-|..=+..+.-.+|.-|++.++.|-.--+.... -..++-+-..=..|....||+++++.+..+... .+
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~- 332 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NP- 332 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-Cc-
Confidence 34455778777777888889999999999988655444433 244555666667899999999999999766643 11
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhc------CCCCChhhHHHHHHHHHHHH
Q 001018 975 MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSA------VPSSSSDVMRRRERANAFCE 1047 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~------vpN~~~~~~~R~~vAk~l~~ 1047 (1188)
.....+.....--.-|.++.+|+.... ++-.++..-+. .+.|.+.+++. .+++ |...-+-|.+
T Consensus 333 ~~~~~~~~~~~l~~~~~D~~~rir~~v----~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~V------R~~Am~~Laq 402 (1266)
T KOG1525|consen 333 SIAKASTILLALRERDLDEDVRVRTQV----VIVACDVMKFKLVYIPLLLKLVAERLRDKKIKV------RKQAMNGLAQ 402 (1266)
T ss_pred hhhhHHHHHHHHHhhcCChhhhheeeE----EEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHH------HHHHHHHHHH
Confidence 221111111111123445555555432 23333444444 44454555544 5677 7766667777
Q ss_pred HHHh-hccccCchhhhhhhHH--HHHHHHHhccCCCChHHHHHHHHHHhhcc
Q 001018 1048 SIRA-LDATELSATSVRDFLL--PAIQNLLKDADSLDPAHKEALEIIMKDRS 1096 (1188)
Q Consensus 1048 a~~a-L~~~~l~~~~v~~~il--P~L~~L~~D~d~l~~~~k~~l~~i~ke~~ 1096 (1188)
.|.. ..++.-+...+...+- |. .|+.=....+-..|..+|.|+.++.
T Consensus 403 lYk~~~~~~~~~~k~~t~~~swIp~--kLL~~~y~~~~~~r~~vE~il~~~L 452 (1266)
T KOG1525|consen 403 LYKNVYCLRSAGGKEITPPFSWIPD--KLLHLYYENDLDDRLLVERILAEYL 452 (1266)
T ss_pred HHHHHHHhhccCcccccccccccch--hHHhhHhhccccHHHHHHHHHHHhh
Confidence 7773 2222111112222222 22 1222223333566788888887776
No 147
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.27 E-value=23 Score=44.31 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=29.4
Q ss_pred CCCChhhhhHhHHHHHHHHHHcCCccccee-ccccccCCCCCCCCCC
Q 001018 144 GPLKDIERKDLNCAVKEYLLLAGYRLTAMT-FYEEVTDQNLDIWQNT 189 (1188)
Q Consensus 144 ~~ikp~E~r~LN~lv~eYLl~~~Ykltsit-f~dE~~dqd~e~W~dv 189 (1188)
.+=.+|||-||--+.+-|+---+ ||..|+ +..+ ..-|.|+
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~-kl~~vEr~~~~-----~g~~~d~ 377 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKP-KLEKVERKLPE-----LGIWKDV 377 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHH-HHHHHHHhccc-----ccchhhH
Confidence 34568999999999999998777 887774 2222 2347777
No 148
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.00 E-value=3.4e+02 Score=35.26 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHH-hhchHHHH--HHHHHHHHHHhcC-C--ChhHHHHHHHHHHHhcc
Q 001018 935 KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ-HFKNDMIV--DKIRVQMDAFLED-G--SHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 935 ~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~-~l~~e~~~--ekl~~~~~slL~D-~--~~~vR~~vv~al~~l~p 1008 (1188)
+.++..|+=.++......+---+||+-..+..|.. ++...++. .-|+--+-.+..| + .+.+-|+.+. .=.+
T Consensus 455 d~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh---~K~~ 531 (938)
T KOG1077|consen 455 DYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLH---EKLH 531 (938)
T ss_pred ccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHH---HHhc
Confidence 45666677777777777777788999888877664 23322221 1122223334444 3 4555555543 3345
Q ss_pred cCCHHHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHHH
Q 001018 1009 HTTERLRDYLLSKIFQLSA-VPSSSSDVMRRRERANAFC 1046 (1188)
Q Consensus 1009 ~~~~~~r~~IlP~L~~L~~-vpN~~~~~~~R~~vAk~l~ 1046 (1188)
.+++-.|.-++....++.+ .|-+ +-++.+.+.
T Consensus 532 ~~s~~tr~lLLtTyiKl~nl~PEi------~~~v~~vFq 564 (938)
T KOG1077|consen 532 LCSPVTRALLLTTYIKLINLFPEI------KSNVQKVFQ 564 (938)
T ss_pred cCChhHHHHHHHHHHHHHhhChhh------hHHHHHHHH
Confidence 5566666677777778777 6766 555655543
No 149
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=69.76 E-value=36 Score=32.74 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhc-hhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 903 FNILWEMVVSSNIDMKINAANLLKVIVPYIN-AKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 903 LpiL~~lv~D~~pnVR~naak~L~~L~~~ig-~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
+.-.+..+.|+-|-||-.....|.+++..-. ...-...|+..+.++.+|+|.=|=..+|.++..||.....
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445666789999999999999999988766 4455578888888999999999999999999999976654
No 150
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.74 E-value=47 Score=34.57 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=65.0
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhccC-CCcchHHHHHHHHHHHHH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGSD-QNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~LasD-~d~dVR~aaieAl~~LA~ 969 (1188)
.+..-..++-.|..-+.+.+|+|=+-+..+|+.+++..|. ++.+...+-.|+.|.++ .+..||--+.+-|...+.
T Consensus 31 ~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 31 DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3455577888888889999999999999999999888765 68888999999999998 677777777777777776
Q ss_pred hhch
Q 001018 970 HFKN 973 (1188)
Q Consensus 970 ~l~~ 973 (1188)
.+..
T Consensus 111 ~f~~ 114 (144)
T cd03568 111 EFKN 114 (144)
T ss_pred HhCC
Confidence 6653
No 151
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.23 E-value=82 Score=42.46 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHHHhCchhhHhhHHHHHHHHhh---cCchhHHHHHHHHHHHHH-hhhChh
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIM-DACVTLAKNVGEMRTEMELLPQCWEQIN---HMYEERRLLVAQSCGELA-EFVRPE 575 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa-~~l~~iA~~lg~ert~~ELLP~l~eli~---Dd~dEVRlLvAescg~La-~~vg~e 575 (1188)
.+|....+.-+.++.|+.+.-+. +..+.+-.-+ .++...-+++++..+++ -..--.|-.+.+.||.+. ..+.++
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~el-S~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~ 347 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVEL-SERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDE 347 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcch
Confidence 34555555556666666533222 1222222111 24445556666655444 345568888999999887 334322
Q ss_pred --------hhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC-chhhhhHHHHHHHhccCCChhHHHHHHHhhHHH
Q 001018 576 --------IRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN-TDKYFKVEDLMFQLVCDPSGVVVETTFKELLPA 646 (1188)
Q Consensus 576 --------~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~-~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpa 646 (1188)
.+. .++..|++=+.|-++-||..|..-+..|+..=.- .....++......=+.|-+..||..|++.+.+.
T Consensus 348 e~~~~sk~~r~-~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 348 ELEEMSKSLRD-ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred hhhHHHHHHHH-HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 222 2577888888899999999999999999876433 335667888888888999999999999998666
Q ss_pred HHh
Q 001018 647 VIN 649 (1188)
Q Consensus 647 la~ 649 (1188)
+.+
T Consensus 427 L~~ 429 (1251)
T KOG0414|consen 427 LDR 429 (1251)
T ss_pred Hhc
Confidence 554
No 152
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.95 E-value=21 Score=39.60 Aligned_cols=84 Identities=29% Similarity=0.362 Sum_probs=47.6
Q ss_pred HHHhhhhhHHHHhhhhhhhhhhhhh---hhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHh
Q 001018 217 AMLRENESLLKVNERLNHEKESLLK---TKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEIT 293 (1188)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~ 293 (1188)
+-++.||...++++.+.....+..+ ..+........|...+++.+++++..++++..+++..+...+|.+-+.+|..
T Consensus 124 ~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 124 ATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred HHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4556666677777776655443322 1123333445555555556666666666666666666666666666666666
Q ss_pred hhhhhhc
Q 001018 294 ALKMHIE 300 (1188)
Q Consensus 294 ~l~~~ie 300 (1188)
.|..+|+
T Consensus 204 ~Lq~~i~ 210 (216)
T KOG1962|consen 204 KLQEQIE 210 (216)
T ss_pred HHHHHHh
Confidence 6655554
No 153
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=66.81 E-value=26 Score=38.08 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=30.6
Q ss_pred HhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHH
Q 001018 219 LRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLI 271 (1188)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 271 (1188)
=+||.+|..+++.|+.|+..++...|-...+...|...-.+++..+..++..+
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~ 146 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLI 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35666666667777777766666666555555555444444555554444333
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.26 E-value=50 Score=34.25 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 001018 322 ERYEEEIKSLLKEIERLRA 340 (1188)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~ 340 (1188)
..|..++++...|++.++.
T Consensus 129 tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578889999889988875
No 155
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=65.65 E-value=3.4e+02 Score=39.18 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHh-Cc-----hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHH-hhhChhh-----hhhhhHHHH
Q 001018 518 QRRIIMDACVTLAKNV-GE-----MRTEMELLPQCWEQINHMYEERRLLVAQSCGELA-EFVRPEI-----RDSLILSIV 585 (1188)
Q Consensus 518 vRr~aa~~l~~iA~~l-g~-----ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La-~~vg~e~-----r~slLL~~L 585 (1188)
-|.-.+++++.|+..= +. .+.++.|-+++.+..-|...+|++.+.+++..++ +++..++ -...+|.+|
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4888999999998632 21 2344446666666555656789999999998888 5655443 223467788
Q ss_pred HH-hhcCCcHHHHHHHHHHHHhhcccCCCchh--hhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 586 QQ-LVEDSATVVREAAARNLALLLPLFPNTDK--YFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 586 qq-L~eD~e~~VR~aAAksL~~l~~~l~~~d~--~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+. +..-....||+.+.+++..+........+ ...++.+|.....|....+...|.+.+
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl 1248 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEII 1248 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 77 66678889999999999988776654432 345777777777888888887776655
No 156
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=65.40 E-value=69 Score=34.81 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=58.8
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHH
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVD 978 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~e 978 (1188)
-.+.||++.+.+.....-.||-|.+....|...-+ ...|+|.|-+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~----~~kilPvlPq------------------------------- 80 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG----GEKILPVLPQ------------------------------- 80 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc----hhHHHHHHHH-------------------------------
Confidence 38999999999998888888888888888776621 2233443322
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHh---cccCCHHHHH---HHHHHHHHhhc
Q 001018 979 KIRVQMDAFLEDGSHEATVAVVRALAVA---VPHTTERLRD---YLLSKIFQLSA 1027 (1188)
Q Consensus 979 kl~~~~~slL~D~~~~vR~~vv~al~~l---~p~~~~~~r~---~IlP~L~~L~~ 1027 (1188)
+.+-+.+-|.-+++.+.-++++++..+ .+.+++.+.- .++|.+..+-+
T Consensus 81 -LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 81 -LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 233334445555556666666666666 6666665555 36777776555
No 157
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=65.28 E-value=50 Score=43.27 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=92.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHh---hHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh--hhh
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEM---ELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP--EIR 577 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~---ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~--e~r 577 (1188)
+...|...++-.+-.+|-+-..++.-+..+++.+..-. .|+|.+-+.++=..-+||+-+-..+..+....+. .++
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence 34455555666666677777777777766666543333 3788888877767778887766666555544332 466
Q ss_pred hhhhHHHHHHhhcCCc---HHHHHHHHHHHHhhcccCCCchhh---hhHHHHHHHhccCCChhHHHHHH
Q 001018 578 DSLILSIVQQLVEDSA---TVVREAAARNLALLLPLFPNTDKY---FKVEDLMFQLVCDPSGVVVETTF 640 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e---~~VR~aAAksL~~l~~~l~~~d~~---~qi~~~f~~Ll~D~s~~Vr~aa~ 640 (1188)
.+.+.|.+-.|..|.. -.||..|.+.|..+...+|....+ .+++..+.+-+.|+---||.-|+
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 6778899988888877 788999999999999888776432 24555555555666555555553
No 158
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.09 E-value=69 Score=38.51 Aligned_cols=121 Identities=14% Similarity=0.111 Sum_probs=87.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhch--hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH---HHHHH
Q 001018 906 LWEMVVSSNIDMKINAANLLKVIVPYINA--KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM---IVDKI 980 (1188)
Q Consensus 906 L~~lv~D~~pnVR~naak~L~~L~~~ig~--~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~---~~ekl 980 (1188)
++..++|.+.+||-.+...++.+...... ..-...+++.+..+..|.+..||-..+..+..++.....+. +..-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 45578999999999999999999877322 22345678888899999999999999999988777655443 22223
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHhh
Q 001018 981 RVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD---YLLSKIFQLS 1026 (1188)
Q Consensus 981 ~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L~ 1026 (1188)
.+.+.+-+.--.+.+|.-.++.+..++..++|.|.. .+++....+.
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 333344455556788999999999999999887766 2444444433
No 159
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=64.80 E-value=18 Score=34.63 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=54.8
Q ss_pred cCCCcchHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhcccCCHHHHH-HHHHHH
Q 001018 950 SDQNLNVKYASIDAFGAVAQHFKND--MIVDKIRVQMDAFLEDG--SHEATVAVVRALAVAVPHTTERLRD-YLLSKI 1022 (1188)
Q Consensus 950 sD~d~dVR~aaieAl~~LA~~l~~e--~~~ekl~~~~~slL~D~--~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L 1022 (1188)
.|.+|.+|.++..-+..++..++.. .+..+|..++...+-|+ ....+.=++.+|..++ ++.+. .|+|.|
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~l 89 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPNL 89 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccCc
Confidence 4779999999999999999998853 57788999998888876 4566777888888875 45566 787765
No 160
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=64.55 E-value=47 Score=37.90 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=22.5
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 260 LHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
+.-++.-+|.++.-+++-+..-++.+..+..|++-+|.++|.
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555554
No 161
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.53 E-value=1.1e+02 Score=35.85 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=8.5
Q ss_pred HHHhhhcCCC-CC
Q 001018 43 RLKEFFSDPS-HF 54 (1188)
Q Consensus 43 ~Lr~fFsnp~-~f 54 (1188)
-|++||..=| .|
T Consensus 15 sL~~FL~~~~I~F 27 (325)
T PF08317_consen 15 SLQDFLNMTGIRF 27 (325)
T ss_pred CHHHHHHHhCcee
Confidence 4788888765 46
No 162
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.05 E-value=63 Score=39.24 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=24.9
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 260 LHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
+.+.+.++++..+++..++...++.+..+++.-++|+..|.
T Consensus 201 l~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 201 LAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444555566666666666666666666666666655444
No 163
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=63.97 E-value=72 Score=43.26 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=80.6
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchH-HHHHHHHHHHHHhhchH--HHH
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVK-YASIDAFGAVAQHFKND--MIV 977 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR-~aaieAl~~LA~~l~~e--~~~ 977 (1188)
..+|.+..++.+..++||..+++.+..+.+.-..+... .++-.+.-|..|.+--|| ..+.+.+..|...+... -+.
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~-~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~ 894 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMA-TVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYN 894 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccc
Confidence 57889999999999999999999999998775555443 344555556666655554 45556667666665443 223
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCC
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTT 1011 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~ 1011 (1188)
--+.+-+...+.|.+-.+|.++-++|++++|.++
T Consensus 895 ~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 895 PLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred eeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 3355666667888888999999999999998873
No 164
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.90 E-value=1.2e+02 Score=31.68 Aligned_cols=18 Identities=33% Similarity=0.211 Sum_probs=7.1
Q ss_pred hhHHHHhhhhhhhhhhhh
Q 001018 223 ESLLKVNERLNHEKESLL 240 (1188)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~ 240 (1188)
.++...++.|+++.+.+.
T Consensus 20 dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQ 37 (140)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333333444444433333
No 165
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=63.84 E-value=10 Score=31.10 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=17.4
Q ss_pred hhhHHHHHHhhcCCcHHHHHHHHH
Q 001018 579 SLILSIVQQLVEDSATVVREAAAR 602 (1188)
Q Consensus 579 slLL~~LqqL~eD~e~~VR~aAAk 602 (1188)
+.++..+.+-+.|.++.||+||++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 356677777777888888887765
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.81 E-value=27 Score=44.54 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
++.+|---+.|.++.|||+|+-+++=+.- +..+.+...+.-+.++=..-||+-+|=++|-...=-|-.. -+
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~-----~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai 626 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLF-----RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AI 626 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEe-----cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HH
Confidence 33444445789999999999977665421 2222333333334455558899999988886544333222 25
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc--hhhhhHHHHHHHhccCCChh
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNT--DKYFKVEDLMFQLVCDPSGV 634 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~--d~~~qi~~~f~~Ll~D~s~~ 634 (1188)
.+|+.|.+|...-||..|.-.++.|.=...+. -+++.+...|..++.|--..
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 56788899999999999998888887665543 36788899999888887544
No 167
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.65 E-value=45 Score=35.42 Aligned_cols=87 Identities=15% Similarity=-0.012 Sum_probs=59.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHH
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSI 584 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~ 584 (1188)
.++...++++++-+||+++-.+...... +....+++..|...+.|++.-|+..++-.+..++.. ...-++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-----~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-----DPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHH
Confidence 5777778888888888887766665554 445677888888888888888888888887777765 22334555
Q ss_pred HHHhhc-CCcHHHHHH
Q 001018 585 VQQLVE-DSATVVREA 599 (1188)
Q Consensus 585 LqqL~e-D~e~~VR~a 599 (1188)
++.... ...+..|+|
T Consensus 180 l~~~~~~~~~~t~r~a 195 (197)
T cd06561 180 LEKNGLSMPRLTLRYA 195 (197)
T ss_pred HHHHHHhCChHHHHHH
Confidence 655333 245555554
No 168
>PRK11637 AmiB activator; Provisional
Probab=62.61 E-value=41 Score=40.86 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=22.2
Q ss_pred HhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHh
Q 001018 228 VNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRREL 285 (1188)
Q Consensus 228 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (1188)
+++.+..++..+.+...-...++..+.+.+..+...|.+.+.++..+++.+.....++
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333333333333333444444444443333333333333333333333333
No 169
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.32 E-value=59 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=7.2
Q ss_pred hhhhhHHHHhhhhhhhhh
Q 001018 220 RENESLLKVNERLNHEKE 237 (1188)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~ 237 (1188)
.+||+-.++++.|..+++
T Consensus 45 ~daEn~k~eie~L~~el~ 62 (140)
T PF10473_consen 45 LDAENSKAEIETLEEELE 62 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 170
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.87 E-value=1.6e+02 Score=38.46 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=52.3
Q ss_pred hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH---HH--HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccC
Q 001018 938 SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM---IV--DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 938 s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~---~~--ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
++..+-.|+..-+.-|+.||.++|+-|..|..+.+.+. +. -.-...+|.+|.|..--||-..+--+..++...
T Consensus 120 ~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 34556677788888999999999999999999887642 11 112334677888887777777777776666444
No 171
>PRK11637 AmiB activator; Provisional
Probab=61.77 E-value=29 Score=42.19 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=31.1
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhh
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITA 294 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~ 294 (1188)
+.++.+.+..++....+.......++..+.+.++.+.++|...+..+..+++.+.....++.....+|..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444433344444444444444444444444444444444444444444444433
No 172
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=61.57 E-value=80 Score=32.11 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=61.6
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhccC---CCcchHHHHHHHHHHHH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGSD---QNLNVKYASIDAFGAVA 968 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~LasD---~d~dVR~aaieAl~~LA 968 (1188)
+......+..|-.-+++.+|+|.+.++..|+.++...|. ++.+...+-.|+.+... .+..||.-+++.+...+
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999999999888766 45554555568887776 47778888888888888
Q ss_pred Hhhch
Q 001018 969 QHFKN 973 (1188)
Q Consensus 969 ~~l~~ 973 (1188)
..++.
T Consensus 112 ~~f~~ 116 (133)
T cd03561 112 ESFGG 116 (133)
T ss_pred HHhcC
Confidence 77765
No 173
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=61.35 E-value=11 Score=28.05 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCC
Q 001018 594 TVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDP 631 (1188)
Q Consensus 594 ~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~ 631 (1188)
|.||+.|+..|+.+. ++ +..+.+..++.|+
T Consensus 1 ~~vR~~aa~aLg~~~----~~----~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLG----DE----EAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcC----CH----hHHHHHHHHhcCC
Confidence 679999999998863 33 5566666666663
No 174
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=61.04 E-value=11 Score=30.98 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 604 LALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 604 L~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
|..+...-+.--.+..+...+..-+.|+++.||.+|++.+
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3444444333334558899999999999999999997653
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=59.78 E-value=1.2e+02 Score=34.86 Aligned_cols=136 Identities=13% Similarity=0.200 Sum_probs=90.7
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh------------hhhhhhhhHHHhhc----cCCCcchHHH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK------------VTSMQVLPALVTLG----SDQNLNVKYA 959 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~------------~ls~~VlPaLv~La----sD~d~dVR~a 959 (1188)
+.+...++|.++.++.|..+.+|.--+..|..+...+... ++...+.|++.-|= +|....+=..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 5566789999999999999999999999999998876543 34445555555332 2666777777
Q ss_pred HHHHHHHHHHhh-c------hHHHHHHHHH-HHHHHhcC---CChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHh
Q 001018 960 SIDAFGAVAQHF-K------NDMIVDKIRV-QMDAFLED---GSHEATVAVVRALAVAVPHTTERLRD---YLLSKIFQL 1025 (1188)
Q Consensus 960 aieAl~~LA~~l-~------~e~~~ekl~~-~~~slL~D---~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L 1025 (1188)
+..++-.|+... . ...+.+-+.. .+..+.-= +.+.++...++.+..++..++..... .|+|.|...
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 777777776532 1 1122222223 12222111 24788888888888888888876655 478887776
Q ss_pred hcCCCC
Q 001018 1026 SAVPSS 1031 (1188)
Q Consensus 1026 ~~vpN~ 1031 (1188)
...|-.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 665543
No 176
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.76 E-value=3.5e+02 Score=32.28 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHhhhch--hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh--hchHHHHHH--HHHHHHHHh
Q 001018 915 IDMKINAANLLKVIVPYINA--KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH--FKNDMIVDK--IRVQMDAFL 988 (1188)
Q Consensus 915 pnVR~naak~L~~L~~~ig~--~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~--l~~e~~~ek--l~~~~~slL 988 (1188)
+.=|.-+...|..+++.+|. +.++-.-++.+...-++++..||..+...|+++++. ..++.+.+. +...+..+-
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 45567777777778777765 566666677777799999999999999999999875 344444422 444444455
Q ss_pred cCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhc
Q 001018 989 EDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 989 ~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~ 1027 (1188)
.|+.-.+|..++.|++.++.+-.+-... .-++=...|..
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~ 216 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRD 216 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHH
Confidence 6777789999999999999999887666 45554444444
No 177
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=59.67 E-value=77 Score=32.50 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred HHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhh
Q 001018 862 DYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVT 937 (1188)
Q Consensus 862 nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~l 937 (1188)
..+.+.|........|.. ++.-...+...+.....++..|-.-+++.+|+|-+.++..|..++...|. +..
T Consensus 8 ~li~kATs~~~~~~Dw~~-----~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~ 82 (140)
T PF00790_consen 8 ELIEKATSESLPSPDWSL-----ILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA 82 (140)
T ss_dssp HHHHHHT-TTSSS--HHH-----HHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHHHHhCcCCCCCCHHH-----HHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 345555554444445654 11111222233555678888999999999999999999999999887765 456
Q ss_pred hhhhhhHHHhhccCCCcc----hHHHHHHHHHHHHHhh
Q 001018 938 SMQVLPALVTLGSDQNLN----VKYASIDAFGAVAQHF 971 (1188)
Q Consensus 938 s~~VlPaLv~LasD~d~d----VR~aaieAl~~LA~~l 971 (1188)
+...+-.|..|.+++... ||--+++.+...+..|
T Consensus 83 ~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 666777777766654433 6666666666666655
No 178
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.54 E-value=64 Score=36.43 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=45.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhH
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCT 289 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (1188)
+-.+.++|...+..-.+..+-+..++.++.+.+.+++..+++.++++..++..++..+..+++.+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666677778888888888888888888888888777766665554433
No 179
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.35 E-value=83 Score=40.21 Aligned_cols=128 Identities=17% Similarity=0.264 Sum_probs=87.0
Q ss_pred chhHHHHHHhhhcccchhcchhhHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCch
Q 001018 457 GLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEM 536 (1188)
Q Consensus 457 ~~~~v~lls~~lP~Ivp~V~~~~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~e 536 (1188)
|...|.+|-..|...+|++-+.+ ...|..|+..+.-..|-.+++.|+.+..+.-.+
T Consensus 278 Gpk~islFl~kls~l~p~i~lrq------------------------~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d 333 (1128)
T COG5098 278 GPKDISLFLNKLSELSPGIMLRQ------------------------YEHFDELLDSESFTLRCCFLEICANLVEHFKKD 333 (1128)
T ss_pred ChHHHHHHHHHHhhcCchHHHHH------------------------HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcc
Confidence 44556666666666666544333 234555666666677777777777776655432
Q ss_pred h--------hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh-hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhh
Q 001018 537 R--------TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP-EIRDSLILSIVQQLVEDSATVVREAAARNLALL 607 (1188)
Q Consensus 537 r--------t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~-e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l 607 (1188)
- +...|+-.+-|-..|-++=+|..+.+.|..+-..=.. ..+.+-+......-..|++..||+.|++-+.++
T Consensus 334 ~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 334 GQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 2 3345777777777889999999999999998744211 223444566677778899999999999988876
Q ss_pred c
Q 001018 608 L 608 (1188)
Q Consensus 608 ~ 608 (1188)
.
T Consensus 414 L 414 (1128)
T COG5098 414 L 414 (1128)
T ss_pred H
Confidence 4
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.04 E-value=1.5e+02 Score=34.80 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=7.8
Q ss_pred HHHHhhhcCCC
Q 001018 42 IRLKEFFSDPS 52 (1188)
Q Consensus 42 ~~Lr~fFsnp~ 52 (1188)
..|.+||+.=|
T Consensus 10 isL~dFL~~t~ 20 (312)
T smart00787 10 ISLQDFLNMTG 20 (312)
T ss_pred ccHHHHHHHcC
Confidence 35788887766
No 181
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=58.86 E-value=1.1e+02 Score=33.34 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=22.1
Q ss_pred hcCCChhHHHHHHHHHHHH---Hhhhchhhhh--hhhhhHHHhhcc
Q 001018 910 VVSSNIDMKINAANLLKVI---VPYINAKVTS--MQVLPALVTLGS 950 (1188)
Q Consensus 910 v~D~~pnVR~naak~L~~L---~~~ig~~~ls--~~VlPaLv~Las 950 (1188)
+....|.|..++.+.|..| .+.+|..++- .+++|.+..+-+
T Consensus 89 L~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 89 LNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666 5555544432 344444444333
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.78 E-value=58 Score=38.18 Aligned_cols=60 Identities=30% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHHHhhccchH--HH-HHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhH
Q 001018 198 RHYYYQYLSSTTE--AA-EEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSL 257 (1188)
Q Consensus 198 ~~~yr~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (1188)
+..|..|+..... .. ++-.....|...+.++.+++.+|...+.+.++..+.++..+....
T Consensus 25 ~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 25 RDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp -----------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777754431 11 111223334444555555555555555544444444444444333
No 183
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=57.33 E-value=1.2e+02 Score=31.54 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=62.9
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHHh
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~~ 970 (1188)
+......+-.+-.-+++.+|+|=+-+...|+.+++..|. ++.+...+..|+.|.+ ..+..||--+++.+..-+..
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 444577788888888999999999999999999887655 6888888899998887 46667887777777777776
Q ss_pred hchH
Q 001018 971 FKND 974 (1188)
Q Consensus 971 l~~e 974 (1188)
++.+
T Consensus 116 f~~~ 119 (142)
T cd03569 116 FRNK 119 (142)
T ss_pred hCCC
Confidence 6543
No 184
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=56.41 E-value=78 Score=39.70 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=44.6
Q ss_pred HHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhh
Q 001018 226 LKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALK 296 (1188)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~ 296 (1188)
....+...+|+..|++.....+.++..+.+.++.++.+|...++....+++..+........+..|+..|+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~ 212 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK 212 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777777777777777777777777766666666666554444444444555555553
No 185
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.33 E-value=69 Score=40.05 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 269 NLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
+.+..++.+++....|+..++.+++.||.+||.
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555666666777777777775
No 186
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=56.04 E-value=71 Score=36.60 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhc--CchhHHHHHHHHHHHHHhhhChhhhhh
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINH--MYEERRLLVAQSCGELAEFVRPEIRDS 579 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~D--d~dEVRlLvAescg~La~~vg~e~r~s 579 (1188)
+-++-|.+=.+++..+-|..++--++.+ .. ..=+|++.+-..| +..-||-.+|+++|.++. +
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl-------~s-~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----e---- 250 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQL-------QS-PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----E---- 250 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhc-------cc-hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----H----
Confidence 4456667777888888888776544433 22 2235666664433 467899999999999763 1
Q ss_pred hhHHHHHHhhcCCcHHHHHHHHHHHHh
Q 001018 580 LILSIVQQLVEDSATVVREAAARNLAL 606 (1188)
Q Consensus 580 lLL~~LqqL~eD~e~~VR~aAAksL~~ 606 (1188)
-.+..|+..+.|++++||+.+.-.|..
T Consensus 251 ~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 251 DCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 237789999999999999998876654
No 187
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=55.71 E-value=1e+02 Score=33.37 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh---------------h-------hhhhhHH-HhhccCCCcchHHHHH
Q 001018 905 ILWEMVVSSNIDMKINAANLLKVIVPYINAKVT---------------S-------MQVLPAL-VTLGSDQNLNVKYASI 961 (1188)
Q Consensus 905 iL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l---------------s-------~~VlPaL-v~LasD~d~dVR~aai 961 (1188)
++.-+..|+.|-||.+++..+..|-+....-.. + .++=-.| .-|....+.-+--.++
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344456799999999999999988655321100 0 0011111 1234455555555666
Q ss_pred HHHHHHHHhhc----hHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 001018 962 DAFGAVAQHFK----NDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 962 eAl~~LA~~l~----~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
+++..+.+..- +..+..++..++..++...++++++..+-+++.++-
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 66666665422 124555566666666666666777766666666543
No 188
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.48 E-value=57 Score=38.06 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=82.2
Q ss_pred hHHhHhhHHHHHhhcCCChhhHHH---HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhH--hhHHHHHHHHhhcC
Q 001018 479 HREELLPLIMCAIERHPDTSTRDS---LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTE--MELLPQCWEQINHM 553 (1188)
Q Consensus 479 ~R~ellPli~~aa~~h~~~~~R~~---Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~--~ELLP~l~eli~Dd 553 (1188)
..-+.+++|+|-+.-|+ +..-+. ++=...+.+|++--.|=++|+-.|..|...++.--.. +.++-++-.-..
T Consensus 104 ~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~-- 180 (334)
T KOG2933|consen 104 DKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS-- 180 (334)
T ss_pred HHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 44456889999888888 323233 3334556789999999999999999999988753332 223333322222
Q ss_pred chhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCC
Q 001018 554 YEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFP 612 (1188)
Q Consensus 554 ~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~ 612 (1188)
..-|+...++--+|...|.... ...+|+.|+....-..++||..++.++.....-++
T Consensus 181 -~dnrFvreda~kAL~aMV~~vt-p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 181 -QDNRFVREDAEKALVAMVNHVT-PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred -ccchHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 2234444444444443332221 23457777777888999999999988877666665
No 189
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=53.77 E-value=18 Score=28.86 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.2
Q ss_pred hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHH
Q 001018 936 VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVA 968 (1188)
Q Consensus 936 ~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA 968 (1188)
.+..-++|.|+.|.++++.+||..+.-|+.-|+
T Consensus 8 i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 8 IVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344556777777777777777777777776654
No 190
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.63 E-value=68 Score=35.45 Aligned_cols=45 Identities=4% Similarity=0.095 Sum_probs=23.9
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhh
Q 001018 252 ALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALK 296 (1188)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~ 296 (1188)
.+...++.....+.+++++.++++++++..+.++.++++++..++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555666666666655555555555555553
No 191
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=53.56 E-value=20 Score=34.32 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=36.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHH--HHHHHHHHHHHHhCCcc
Q 001018 770 EKEDNLRNRITKFLLAVSKQFGDSY--LTHIMLPVFMVAVGDNA 811 (1188)
Q Consensus 770 D~sWrVR~Aia~~l~~La~~fG~e~--t~~~LlP~fl~lL~D~~ 811 (1188)
|.+|.+|.-.|+.+..+|..||..+ .+..+.-.|.+.+.|+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~ 60 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK 60 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC
Confidence 6799999999999999999999765 56678888888888863
No 192
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=53.37 E-value=1.7e+02 Score=29.10 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhC--------hh----------hh
Q 001018 516 EKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVR--------PE----------IR 577 (1188)
Q Consensus 516 p~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg--------~e----------~r 577 (1188)
+.+|...+..++.||..--|+. +..+++.+.+..+. .+..+..+..-+..+.+-+. .. ..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 3566667777777777666554 44566666655553 23333233333333322111 00 11
Q ss_pred hhhhHHHHHHhhcCCc----HHHHHHHHHHHHhhcccCCCchhhh-hHHHHHHHhccCCChhHHHHHHH
Q 001018 578 DSLILSIVQQLVEDSA----TVVREAAARNLALLLPLFPNTDKYF-KVEDLMFQLVCDPSGVVVETTFK 641 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e----~~VR~aAAksL~~l~~~l~~~d~~~-qi~~~f~~Ll~D~s~~Vr~aa~~ 641 (1188)
.+.++..+.+..+... ..+..++.+.+.....-++.....+ .+.+.++.++.+++- +.+|++
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~ 146 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHH
Confidence 2335566655433222 7778888888888888776665544 478888888855543 555544
No 193
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.36 E-value=37 Score=36.59 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=59.0
Q ss_pred hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 001018 936 VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH--FKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 936 ~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~--l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
++.|.-+|.+.+++-+++..||+++++-+..+..+ ..+ .+..|.+.++..|++..+|-.+...+..+..
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999988876 455 4478999999999999999888888877753
No 194
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=1.4e+02 Score=39.31 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=92.4
Q ss_pred HHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhchh---hhhhhhhhHHHh-hccCCCcchHHHHHHHHHHHHHhhch
Q 001018 899 HTMVFNILWEMVVSS-NIDMKINAANLLKVIVPYINAK---VTSMQVLPALVT-LGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~-~pnVR~naak~L~~L~~~ig~~---~ls~~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.+.+.|.|..++.|+ +++|=..|++.|.-|.+++... ++..+.+|+|.+ |..=.-.||=.-+.+|+..|...=+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 378999999999887 6999999999999999988664 556779999885 66666777777777777776655444
Q ss_pred HHHHHHHHHHHHHHhc---CCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhc
Q 001018 974 DMIVDKIRVQMDAFLE---DGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA 1027 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~---D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~ 1027 (1188)
..+..--.+.|.+|++ -..-.+.++++-.+++-++.=+..++-..+|.|..+-.
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs 345 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLS 345 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHh
Confidence 4443333444555443 23335666666777777777777777788888877754
No 195
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=51.98 E-value=2.5e+02 Score=34.63 Aligned_cols=85 Identities=12% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHHHHHhhc----CC-ChhHHHHHHHHHHHHHhhhch--hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH
Q 001018 903 FNILWEMVV----SS-NIDMKINAANLLKVIVPYINA--KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM 975 (1188)
Q Consensus 903 LpiL~~lv~----D~-~pnVR~naak~L~~L~~~ig~--~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~ 975 (1188)
++-+|..++ +. .+++|-.+.+.|..+++.=+. ........-.|..-..|+|++-|+.+..++..=..-+ +.
T Consensus 26 i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~ 103 (464)
T PF11864_consen 26 IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DF 103 (464)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hh
Confidence 334555544 33 467999999999999988655 4556666777777788889998887777765322112 35
Q ss_pred HHHHHHHHHHHHhc
Q 001018 976 IVDKIRVQMDAFLE 989 (1188)
Q Consensus 976 ~~ekl~~~~~slL~ 989 (1188)
|...+.+.+..|+.
T Consensus 104 ~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 104 FEYEIGPFLLSWLE 117 (464)
T ss_pred cccchHHHHHHHHH
Confidence 67789999999986
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.20 E-value=62 Score=36.97 Aligned_cols=17 Identities=47% Similarity=0.532 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhc
Q 001018 326 EEIKSLLKEIERLRAKS 342 (1188)
Q Consensus 326 ~~~~~l~~~~~~~~~~~ 342 (1188)
++-+.|..|+-.+..+.
T Consensus 176 eerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 176 EERKRLEAEVKALQAKK 192 (307)
T ss_pred HHHhhHHHHHHHHhccc
Confidence 34455556655555443
No 197
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.91 E-value=7.3e+02 Score=33.90 Aligned_cols=110 Identities=12% Similarity=0.094 Sum_probs=78.2
Q ss_pred HHHHHHhhhchhhHHHhHHHHHHHhh-----cCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHH
Q 001018 885 IVNAVRFLCTFEEHHTMVFNILWEMV-----VSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYA 959 (1188)
Q Consensus 885 ll~ai~~Lg~~e~~~~~iLpiL~~lv-----~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~a 959 (1188)
|+....++-.+...++.++.-+.+.| .|-.|+||.-.+.-|...+.....-.++...+--+-=..+|.+-.||..
T Consensus 266 Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~ 345 (1048)
T KOG2011|consen 266 LLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLR 345 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHH
Confidence 33333333223334555666666555 5889999999999999988888888888888888888889999999999
Q ss_pred HHHHHHHHHHh---h-chHHHHHHHHHHHHHHhcCCChhH
Q 001018 960 SIDAFGAVAQH---F-KNDMIVDKIRVQMDAFLEDGSHEA 995 (1188)
Q Consensus 960 aieAl~~LA~~---l-~~e~~~ekl~~~~~slL~D~~~~v 995 (1188)
++.++..|-++ . +-+-|.++-..-+.+.. |..+++
T Consensus 346 ~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~ 384 (1048)
T KOG2011|consen 346 CLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNV 384 (1048)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcch
Confidence 99999999987 1 23445566555555555 544333
No 198
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=50.37 E-value=5.8e+02 Score=31.51 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCcc
Q 001018 771 KEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNA 811 (1188)
Q Consensus 771 ~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~ 811 (1188)
.-+|-|.+.|+.|..++..+..+-.....-|.++..|....
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s 139 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS 139 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh
Confidence 44699999999999999999777777766677888886653
No 199
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.17 E-value=1.2e+02 Score=32.96 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhchhhh--------------hhhhhhHHH-hhccCCCcchHHHHHHHHHHHHHh
Q 001018 917 MKINAANLLKVIVPYINAKVT--------------SMQVLPALV-TLGSDQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 917 VR~naak~L~~L~~~ig~~~l--------------s~~VlPaLv-~LasD~d~dVR~aaieAl~~LA~~ 970 (1188)
||.+++..|..+++..+.+.+ ...--|.|. -+..||+..||.++..++..+...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 799999999999988655321 122333334 467899999999999999887764
No 200
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.97 E-value=73 Score=32.19 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCChHHHHHHHHhhccc------hHHHHHHHHHHhhhhhHHHHhhhhhh
Q 001018 192 RVPDALRHYYYQYLSST------TEAAEEKIAMLRENESLLKVNERLNH 234 (1188)
Q Consensus 192 ~~P~~L~~~yr~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (1188)
++||.+-...+.|-... ........+.++||+..+++.+.|..
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~ 52 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD 52 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68888888777774422 22222334677788877777777653
No 201
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.57 E-value=2.1e+02 Score=39.95 Aligned_cols=118 Identities=21% Similarity=0.094 Sum_probs=71.9
Q ss_pred HHhCchhhHhhHHHHHHHH-hhcCchhHHHHHHHHHHHHH---hhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHh
Q 001018 531 KNVGEMRTEMELLPQCWEQ-INHMYEERRLLVAQSCGELA---EFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLAL 606 (1188)
Q Consensus 531 ~~lg~ert~~ELLP~l~el-i~Dd~dEVRlLvAescg~La---~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~ 606 (1188)
...|+.-+ .|++-.+..+ .++..|+||..+..=+..+. .++.-+.+.+.|.-.+..+..|..-.||+.||+.|+.
T Consensus 1517 ~~~~~~l~-~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1517 SWIGHHLQ-PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred hccchhhH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 34444433 3455555533 34467999999776555443 4455678888889999999999999999999999998
Q ss_pred hcccC--C-CchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhccc
Q 001018 607 LLPLF--P-NTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGS 652 (1188)
Q Consensus 607 l~~~l--~-~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~ 652 (1188)
+...- . ..+|....- ..+..-..+.+...++-.-+.+++-|.+
T Consensus 1596 l~~~s~~~~~~~k~d~~~---~~~~s~s~~~i~~HgavlgLgA~VlafP 1641 (1710)
T KOG1851|consen 1596 LLQGSKFQFVSDKRDTTS---NILQSKSKDEIKAHGAVLGLGAIVLAFP 1641 (1710)
T ss_pred HHhccccccchHhhhhhh---hhhhhcchHHHHhhhhHHHHHHHHHhcc
Confidence 76431 1 111111111 2233334455555554444566666543
No 202
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=1.6e+02 Score=29.85 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHhhc------cchHHHHHHHHHHhhhhhHHHHhhhhhh
Q 001018 191 ARVPDALRHYYYQYLS------STTEAAEEKIAMLRENESLLKVNERLNH 234 (1188)
Q Consensus 191 ~~~P~~L~~~yr~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (1188)
.++||-+-+.+.+|-. ........--+.++|++..+.+.+.|..
T Consensus 2 ~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e 51 (119)
T COG1382 2 EQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE 51 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3678888888887743 1111111122577787777777766654
No 203
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.34 E-value=2.4e+02 Score=29.33 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhccC------CCcchHHHHHHHHH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGSD------QNLNVKYASIDAFG 965 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~LasD------~d~dVR~aaieAl~ 965 (1188)
+......+-.+..-+.+.+|+|=+-+...|+.+++..|. ++.+...+.-|+.|.++ ++..||--+++-+.
T Consensus 33 ~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 33 PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 334466777888888999999999999999999887665 56777788888887753 56677777777776
Q ss_pred HHHHhhc
Q 001018 966 AVAQHFK 972 (1188)
Q Consensus 966 ~LA~~l~ 972 (1188)
.-+..++
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 6666654
No 204
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.72 E-value=2.5e+02 Score=36.87 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=85.2
Q ss_pred hhHHHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh--------hccCCCcchHHHHHHHHHH
Q 001018 896 EEHHTMVFNILWEMVVSS-NIDMKINAANLLKVIVPYINAKVTSMQVLPALVT--------LGSDQNLNVKYASIDAFGA 966 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~-~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~--------LasD~d~dVR~aaieAl~~ 966 (1188)
+.+...+--.++.++.|. ..-||++++.+|+.+++=. +--.++.+|-+.. |-.=...|-|..+...++.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLST 598 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 666677778889999998 8899999999999987642 1222233332222 2234567888888888888
Q ss_pred HHHhhchHH-HHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHhhc
Q 001018 967 VAQHFKNDM-IVDKIRVQMDAFLEDG---SHEATVAVVRALAVAVPHTTER---LRDYLLSKIFQLSA 1027 (1188)
Q Consensus 967 LA~~l~~e~-~~ekl~~~~~slL~D~---~~~vR~~vv~al~~l~p~~~~~---~r~~IlP~L~~L~~ 1027 (1188)
+..+.+.-. -...-..++...||+. ...+|-+++.++.-++..++.. +-.+++|.+...+.
T Consensus 599 lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 599 LIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTD 666 (978)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcC
Confidence 887766421 1111223344456664 5799999999999988877653 22267776655444
No 205
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=47.20 E-value=1.8e+02 Score=29.63 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=59.2
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhccCCCcc--hHHHHHHHHHHHH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGSDQNLN--VKYASIDAFGAVA 968 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~LasD~d~d--VR~aaieAl~~LA 968 (1188)
.+......+..|-.-+++++|+|=+-++..|+.++...|. +..+...+..|..+.+++... ||--++..+..-+
T Consensus 31 ~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 31 TPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3455577888888899999999999999999999887555 567777888888888776432 6666666666666
Q ss_pred Hhhc
Q 001018 969 QHFK 972 (1188)
Q Consensus 969 ~~l~ 972 (1188)
..++
T Consensus 111 ~~f~ 114 (133)
T smart00288 111 DAFK 114 (133)
T ss_pred HHHc
Confidence 6554
No 206
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.17 E-value=52 Score=35.43 Aligned_cols=90 Identities=16% Similarity=0.021 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhh
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSL 580 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~sl 580 (1188)
..+..++...++++++-+||+++-.+...+.. .....++..|...+.|++..||..++=.+..++.. +...
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-----~~~~ 189 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-----DPDE 189 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT------HHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-----CHHH
Confidence 34667778888899999999887665544443 44467778788888888888888887777776543 2234
Q ss_pred hHHHHHH-hhcCCcHHHHHH
Q 001018 581 ILSIVQQ-LVEDSATVVREA 599 (1188)
Q Consensus 581 LL~~Lqq-L~eD~e~~VR~a 599 (1188)
+++.|++ .....-|.+|+|
T Consensus 190 v~~~l~~~~~~~~~~~~r~A 209 (213)
T PF08713_consen 190 VLEFLQKNSDRLSRWTLRYA 209 (213)
T ss_dssp HHHHHHHS-----HHHHHHH
T ss_pred HHHHHHHCcccCchhHHHHH
Confidence 4555655 233555666665
No 207
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.29 E-value=1.2e+02 Score=40.67 Aligned_cols=69 Identities=26% Similarity=0.313 Sum_probs=48.8
Q ss_pred hhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhh
Q 001018 222 NESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKM 297 (1188)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~ 297 (1188)
+.++-..++.|+.|.+.+.+ ++..+........+.|++.++..+.+...+.+..+.+.+.+.|++.|++
T Consensus 656 ~~s~d~~ie~le~e~~~l~~-------~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 656 EFSFDDEIEDLEREASRLQK-------EILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred chhHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444456666665554443 4555666666667777778888888888888888889999999999876
No 208
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=45.27 E-value=76 Score=37.18 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh-hccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCh
Q 001018 915 IDMKINAANLLKVIVPYINAKVTSMQVLPALVT-LGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSH 993 (1188)
Q Consensus 915 pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~ 993 (1188)
|+-|...++.|..+.. .+ +++.|+..+.. +.++.+-.+..+.+.+|..=...++ ..+.+++...+..-+.|+..
T Consensus 1 ad~r~~~~~~L~~l~~-~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~~~~~~~~kGl~~kk~ 75 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPKKVVDAFKKGLKDKKP 75 (339)
T ss_pred CcHHHHHHHHHHhCCC-cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHhcCCCC
Confidence 4668888888887765 22 66666666665 5567888888888888877666663 35567788888888999988
Q ss_pred hHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHhhc
Q 001018 994 EATVAVVRALAVAVP----HTTERLRDYLLSKIFQLSA 1027 (1188)
Q Consensus 994 ~vR~~vv~al~~l~p----~~~~~~r~~IlP~L~~L~~ 1027 (1188)
.+|...+..++.+.- .....+...++|.|.+..+
T Consensus 76 ~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 76 PVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred cHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 899999998888764 3334555567777776654
No 209
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=44.71 E-value=21 Score=26.61 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=24.1
Q ss_pred cchhhHHHHHHHhhhcchhcHHHHHHHH
Q 001018 5 RSSLCNCVVNFLLEEKYLLTAFELLQEL 32 (1188)
Q Consensus 5 ~~~~~~~va~~LL~~~~~LTAlEl~~EL 32 (1188)
+..+...|++||++.+|.-||..|-+|.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~ 30 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKES 30 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 4567889999999999999998887764
No 210
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=44.65 E-value=1.3e+02 Score=31.80 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=62.1
Q ss_pred HhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhh-ccCCCcchHHHHHHHHHHHHHh-hchHHH
Q 001018 900 TMVFNILWEMVVSS-NIDMKINAANLLKVIVPYINAKVTSMQVLPALVTL-GSDQNLNVKYASIDAFGAVAQH-FKNDMI 976 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~-~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~L-asD~d~dVR~aaieAl~~LA~~-l~~e~~ 976 (1188)
..+|++|..+++.+ .+.+|..+++.++.|+.. |+-... .+......- ..+.+-...-... ...... ...+++
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k-~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHK-SIQKSLDSKSSENSNDESTDISL---PMMGISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHh-cccccCCccccccccccchhhHH---hhccCCCchHHHH
Confidence 45777777777644 699999999999987633 332221 111111100 0111111111111 111111 344555
Q ss_pred HHHHHHHHHHHhcCCCh-----hHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhc
Q 001018 977 VDKIRVQMDAFLEDGSH-----EATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA 1027 (1188)
Q Consensus 977 ~ekl~~~~~slL~D~~~-----~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~ 1027 (1188)
..-+...++..|.|+.. .+--++...|..+...+ ..+...|+|.+.....
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIR 138 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHH
Confidence 56566777777888732 23333344444455555 5666677776666555
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=44.56 E-value=1.7e+02 Score=29.80 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=43.4
Q ss_pred HhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhh--chhhh-hhhhhhHHHhhccCCCcchHHHHHHHHHHHHH
Q 001018 900 TMVFNILWEMV-VSSNIDMKINAANLLKVIVPYI--NAKVT-SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 900 ~~iLpiL~~lv-~D~~pnVR~naak~L~~L~~~i--g~~~l-s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~ 969 (1188)
-.++-.|.+++ ....|.+=.-++.=+..++... |...+ .-.++..+.+|.+++|.+|||.|+.|+..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555555555 3334444444555555555553 22333 34577888899999999999999999887764
No 212
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=44.29 E-value=3.3e+02 Score=33.26 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHhccCCChhHHHHHHHhhHHHHHhccc
Q 001018 620 VEDLMFQLVCDPSGVVVETTFKELLPAVINWGS 652 (1188)
Q Consensus 620 i~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~ 652 (1188)
..+.|+.++.|...-...-+...+ ..++.|..
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Il-s~la~~g~ 146 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRIL-SKLACFGN 146 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHH-HHHHHhcc
Confidence 467788888888777777444333 66666654
No 213
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.17 E-value=4.3e+02 Score=37.94 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=101.5
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhh-hhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKV-TSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~-ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.+.+...-+-.+...+..++|-.|+.++..+.+++...|... +....--.+.+|++=.|.--|..-+-|++.|-...|.
T Consensus 870 ~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs 949 (2067)
T KOG1822|consen 870 PEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGS 949 (2067)
T ss_pred HHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 355566666677777888999999999999999999988764 4455556677899999999999999999999887543
Q ss_pred ---HHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhc
Q 001018 974 ---DMIVDKIRVQMDAFLEDGSH-EATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA 1027 (1188)
Q Consensus 974 ---e~~~ekl~~~~~slL~D~~~-~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~ 1027 (1188)
......-.-++..+..|+.. .|+--.++++..++..-.|-++-++-|.+.-+..
T Consensus 950 ~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~ 1007 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLK 1007 (2067)
T ss_pred CCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHH
Confidence 33333334467778889865 9999999999998877777666666665554443
No 214
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=43.88 E-value=47 Score=41.92 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=62.9
Q ss_pred hhHHHhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh----hccCCCcchHHHHHHHHHHHHHh
Q 001018 896 EEHHTMVFNILWEMV-VSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT----LGSDQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv-~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~----LasD~d~dVR~aaieAl~~LA~~ 970 (1188)
......++-.+-.++ .++...||.+++.-|..+++.+.....+..+.|+|-. |..|++|-|+--+++|++..|+.
T Consensus 474 ~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 474 PQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred hHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 444455666666666 3444459999999999999999999999999999975 67899999999999999999976
Q ss_pred hch
Q 001018 971 FKN 973 (1188)
Q Consensus 971 l~~ 973 (1188)
..-
T Consensus 554 T~~ 556 (559)
T PF14868_consen 554 TSH 556 (559)
T ss_pred CCc
Confidence 543
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.42 E-value=72 Score=39.87 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=77.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhc
Q 001018 511 IKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVE 590 (1188)
Q Consensus 511 iKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~e 590 (1188)
+.|-++.|||+|+-+++-+. =+.++.|+..+.-+.+.-..-||.-+|=++|-...--|. ...+.+|..|..
T Consensus 561 vsD~nDDVrRAAViAlGfvc-----~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~ 631 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVC-----CDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMY 631 (926)
T ss_pred cccCchHHHHHHHHheeeeE-----ecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhh
Confidence 78999999999986655432 222334444333344444577999998888765443332 223667888999
Q ss_pred CCcHHHHHHHHHHHHhhcccCCCc--hhhhhHHHHHHHhccCC
Q 001018 591 DSATVVREAAARNLALLLPLFPNT--DKYFKVEDLMFQLVCDP 631 (1188)
Q Consensus 591 D~e~~VR~aAAksL~~l~~~l~~~--d~~~qi~~~f~~Ll~D~ 631 (1188)
|...-||.+|.-.++.|.-...++ ..+..|..-|..++.|.
T Consensus 632 D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 632 DTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred CcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 999999999988888877666553 25667888888887776
No 216
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=42.90 E-value=11 Score=35.61 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=28.1
Q ss_pred ChhhhhHhHHHHHHHHHHcCCcccceeccccc
Q 001018 147 KDIERKDLNCAVKEYLLLAGYRLTAMTFYEEV 178 (1188)
Q Consensus 147 kp~E~r~LN~lv~eYLl~~~Ykltsitf~dE~ 178 (1188)
+-.|=|.+|-||.|||--+||+-|.-.|.-|.
T Consensus 14 ~t~eg~Li~eLIrEyLef~~l~~TlsVf~~Es 45 (81)
T PF09398_consen 14 STKEGRLINELIREYLEFNNLDYTLSVFQPES 45 (81)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHcCCccHHHHHhhcc
Confidence 34567899999999999999999999999998
No 217
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.83 E-value=63 Score=37.77 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=55.7
Q ss_pred hhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccc
Q 001018 229 NERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGS 302 (1188)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~ 302 (1188)
|--|..||-.+.=.-|+....+..+...+-.++++++++-.....+|..+..++.++.++++++.....-|+.+
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34566666666666667777777777888788888888777778888888888888888888888776666654
No 218
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.78 E-value=2.4e+02 Score=29.82 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=74.5
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhh---hhhhHHHh-hccCCCcchHHHHHHHHHHHHHhhc
Q 001018 897 EHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSM---QVLPALVT-LGSDQNLNVKYASIDAFGAVAQHFK 972 (1188)
Q Consensus 897 ~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~---~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l~ 972 (1188)
....++..-+..++.+..+.-|...+..++.+++.-|.+.+.+ .-+..|.. |.++...-++..++.++..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3446677778889999999999999999999998876654422 22223333 4445667789999999998887643
Q ss_pred h------HHHH---HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHH
Q 001018 973 N------DMIV---DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERL 1014 (1188)
Q Consensus 973 ~------e~~~---ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~ 1014 (1188)
. +... -++...+..+++| ......++.++..+++..+.-+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 2 1211 3344444445554 3455566666666665554443
No 219
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=42.45 E-value=2.7e+02 Score=37.90 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=12.0
Q ss_pred hhhhhhhhHHHHhhhhHHHHHHHHHH
Q 001018 80 LVEKLAITEYELRLAQEDVTKLKAEL 105 (1188)
Q Consensus 80 ~~ekvavle~ELR~a~e~I~~Lr~~l 105 (1188)
....+.-++-++..++..+..++.++
T Consensus 686 l~~~l~~l~~~~~~~~~~l~~l~~~~ 711 (1164)
T TIGR02169 686 LKRELSSLQSELRRIENRLDELSQEL 711 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444544555554444444
No 220
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=42.42 E-value=2.3e+02 Score=28.82 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=10.1
Q ss_pred hhhhHHHHhhhhhhhhhhhhhh
Q 001018 221 ENESLLKVNERLNHEKESLLKT 242 (1188)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~ 242 (1188)
++..+.+.++.+..|+-.+.+.
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444444433
No 221
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.38 E-value=9.7e+02 Score=31.84 Aligned_cols=299 Identities=14% Similarity=0.153 Sum_probs=155.1
Q ss_pred chhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCC
Q 001018 749 AFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLK 828 (1188)
Q Consensus 749 ~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~ 828 (1188)
--+|+.+.++|-+..- .+..-=+|..+|=.+......=-++-.+..+--.|+++|.|..|-. +|+++...++-.
T Consensus 481 F~~Wl~~~llpEl~~~----~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~v-V~Ltt~~tlkl~- 554 (978)
T KOG1993|consen 481 FDKWLQEALLPELAND----HGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLV-VRLTTARTLKLV- 554 (978)
T ss_pred HHHHHHHhhCHHhhhc----ccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccce-eehHHHHHHHHh-
Confidence 4579999999988743 2333337888888888887755556666667778899999986532 355333222111
Q ss_pred cchhHhhhh--hhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhh--------hchhhH
Q 001018 829 PRTAVGERL--ATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFL--------CTFEEH 898 (1188)
Q Consensus 829 ~rtaig~~l--~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~L--------g~~e~~ 898 (1188)
-.+| ...+.+|.+-. +=.-+..|....+.|- .++. +++.+..| ......
T Consensus 555 -----vDD~nF~~dsFlp~len-----------lf~~lfkll~~~~e~D----tk~~-VL~~ls~lI~r~~e~I~P~~~~ 613 (978)
T KOG1993|consen 555 -----VDDWNFSEDSFLPYLEN-----------LFVLLFKLLKAVEECD----TKTS-VLNLLSTLIERVSEHIAPYAST 613 (978)
T ss_pred -----hhhccCChhhhhhhHHH-----------HHHHHHHHHHHHhhhh----hHHH-HHHHHHHHHHHHHHhhhHHHHH
Confidence 2233 33344552200 0001122222222220 0111 12222111 112333
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh--hhhhhhhhHHHhhccCCC-cchHHHHHHHHHHHHHhhc---
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK--VTSMQVLPALVTLGSDQN-LNVKYASIDAFGAVAQHFK--- 972 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~--~ls~~VlPaLv~LasD~d-~dVR~aaieAl~~LA~~l~--- 972 (1188)
.-.++|.+|+... .-|-.|.++...|..++..+|.+ ....-++| +++|+.|+. ...-|..-+++..=...++
T Consensus 614 ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~p-VIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~ 691 (978)
T KOG1993|consen 614 IVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYP-VIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ 691 (978)
T ss_pred HHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHH-HHHHhcCCCCCceeehhhhHHHHHHHHHhccc
Confidence 4568999999998 78899999999999999999885 44445555 467888874 5555666666543333222
Q ss_pred ---hHHH--HHHHH----------HHHHH------HhcCCCh--hHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcCC
Q 001018 973 ---NDMI--VDKIR----------VQMDA------FLEDGSH--EATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVP 1029 (1188)
Q Consensus 973 ---~e~~--~ekl~----------~~~~s------lL~D~~~--~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~vp 1029 (1188)
++++ ...+. |++.+ ++..+.+ ++.+.+++.+..+...+..+-...+++.+.-+..++
T Consensus 692 ~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~ 771 (978)
T KOG1993|consen 692 KLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTN 771 (978)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Confidence 2211 11111 11111 1222222 556666666666665554444444666666665543
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccCCC
Q 001018 1030 SSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSL 1080 (1188)
Q Consensus 1030 N~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l 1080 (1188)
-+......+ -+--.++.++ +. ..-.+.+...++.=.=|.++.|++.+
T Consensus 772 ~il~~~~~~-~~L~~lf~~I-~~--~~~yP~~~~~yl~vvaRi~l~n~~~~ 818 (978)
T KOG1993|consen 772 PILGSLLFS-PLLSRLFLSI-AE--NDKYPYVMGEYLLVVARISLRNPSLF 818 (978)
T ss_pred HHHHhhhcc-hhhHHHHHHH-Hh--CCCCchhHHHHHHHHHHHHhcChHHH
Confidence 221110000 0111222222 11 12244566666666667777776643
No 222
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.32 E-value=1.1e+02 Score=33.27 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=17.6
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 257 LEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
+..+..++..++..+..++..+....+.+..++-|+.+|
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444455555554
No 223
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.40 E-value=1.2e+02 Score=30.71 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.5
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 254 TKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
+.-++.++..|+.+|..++.+++.+.....+-+..++||..+....+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788889999999999999988888888888899988855444
No 224
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.35 E-value=89 Score=31.69 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCchhhHhh---HHHHHHHHhhcCchhHHHHHHHHHHHH
Q 001018 499 TRDSLTHTLFNLI-KRPDEKQRRIIMDACVTLAKNVGEMRTEME---LLPQCWEQINHMYEERRLLVAQSCGEL 568 (1188)
Q Consensus 499 ~R~~Ll~ll~nLi-Kdddp~vRr~aa~~l~~iA~~lg~ert~~E---LLP~l~eli~Dd~dEVRlLvAescg~L 568 (1188)
..-+++..|++++ +..|+.+-..|..-++.++++.+..|..-+ .-..+.++.+|..++||+-+..++..+
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3446777777777 555666666666666666666543222111 122334455666666666555444443
No 225
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.35 E-value=1.6e+02 Score=33.12 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=32.9
Q ss_pred HHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhh
Q 001018 215 KIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKT 277 (1188)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1188)
+.....|-..+..+.+.|+.|.+.+....+-.+.++....+.++.++.++.+.+..-+.+...
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666665555555555555555555555555555444444444443
No 226
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.16 E-value=1.5e+02 Score=34.21 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=41.9
Q ss_pred hhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhH----HHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 220 RENESLLKVNERLNHEKESLLKTKEISDGQISALTKSL----EALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
.|+-.+.+....|..+.+.+...++....++..+...+ ...+..|..++.++..++..+.++..+++++-...-+|
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555555555555555555555555554443332 22445555556666666666666666665554444444
Q ss_pred hhhhc
Q 001018 296 KMHIE 300 (1188)
Q Consensus 296 ~~~ie 300 (1188)
-++|.
T Consensus 296 d~EIa 300 (312)
T PF00038_consen 296 DAEIA 300 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 227
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.78 E-value=1e+03 Score=31.70 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=47.3
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~ 969 (1188)
+-....++|-|..--+.++|-+|-.++|=.-..=..+|...+. ..+|.++...+ +...-..||| .|+..+-.
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA-~aiEkil~ 527 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAA-IAIEKLLT 527 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHH-HHHHhccc
Confidence 4555788898888777888888888877555555556666654 56777777554 4555555555 45554443
No 228
>PRK09039 hypothetical protein; Validated
Probab=40.60 E-value=4.1e+02 Score=31.62 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=25.9
Q ss_pred hhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhh
Q 001018 248 GQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALK 296 (1188)
Q Consensus 248 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~ 296 (1188)
.+.+.+...+...+....+...+++.+.+.++..+..+..+.+++.+.+
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444445555555555555555555555555555443
No 229
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=40.56 E-value=3e+02 Score=37.51 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=18.8
Q ss_pred HhccC-CCChHHHHHHHHHHhhccC
Q 001018 1074 LKDAD-SLDPAHKEALEIIMKDRSG 1097 (1188)
Q Consensus 1074 ~~D~d-~l~~~~k~~l~~i~ke~~~ 1097 (1188)
+.+++ .+|+.++..+..++++...
T Consensus 1102 lDE~~~~ld~~~~~~~~~~l~~~~~ 1126 (1164)
T TIGR02169 1102 FDEVDMFLDGVNVERVAKLIREKAG 1126 (1164)
T ss_pred ecccccccCHHHHHHHHHHHHHhcC
Confidence 33344 8999999999999998763
No 230
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.16 E-value=1.4e+02 Score=38.48 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=37.3
Q ss_pred HHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc-------ccccccccccCCCcccCchhhhhHHHHHHHHHHHH
Q 001018 270 LILDLKKTTEHQRRELNDCTAEITALKMHIEG-------SHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIE 336 (1188)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~-------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (1188)
+...+...+++.++.++..++|+..+..+|+. ..-.......+..++....++.+.+++..|+.|..
T Consensus 104 ~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~ 177 (660)
T KOG4302|consen 104 QLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKS 177 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444443 21112333455555666677888888888877654
No 231
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.07 E-value=1.1e+02 Score=40.66 Aligned_cols=115 Identities=26% Similarity=0.354 Sum_probs=61.5
Q ss_pred HHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHH----hhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHh
Q 001018 218 MLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEAL----HRDLKDKENLILDLKKTTEHQRRELNDCTAEIT 293 (1188)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~ 293 (1188)
.+.+++.++.+.+++..++.......--....+..+.+.+... .+.+++.++.+...++.++...+++...+.+..
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666554433322222233344555555322 346667777777777777777777766666666
Q ss_pred hhhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHHHhh
Q 001018 294 ALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRA 340 (1188)
Q Consensus 294 ~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (1188)
-|.+++|... ..+.+. -+++.....+|+.+..+++.+.+
T Consensus 819 ~l~lE~e~l~--~e~~~~------k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 819 RLQLEHEELE--KEISSL------KQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred HHHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555321 001000 11344455666666666666654
No 232
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.86 E-value=4.3e+02 Score=31.11 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=23.4
Q ss_pred CCCchhHHHhhhhhh---hhhhhhHHHHhhhhHHHHHHHHHHhhh
Q 001018 67 VADPQSLLEEKEALV---EKLAITEYELRLAQEDVTKLKAELKKK 108 (1188)
Q Consensus 67 ~~D~~~~~~~~~~~~---ekvavle~ELR~a~e~I~~Lr~~l~~~ 108 (1188)
..++..+.++-.+.- --+-+.+|--|.-+..|..-|.-....
T Consensus 50 ~~~~~sl~~~~~A~~~~~P~Lely~~~c~EL~~~I~egr~~~~~~ 94 (325)
T PF08317_consen 50 DEEPPSLEDYVVAGYCTVPMLELYQFSCRELKKYISEGRQIFEEI 94 (325)
T ss_pred CCCCCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544333 334455566666677777777665544
No 233
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=39.44 E-value=3.2e+02 Score=28.29 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=56.7
Q ss_pred hhHHHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhH-HHhhccC---CCcchHHHHHHHHHH
Q 001018 896 EEHHTMVFNILWEMVV-SSNIDMKINAANLLKVIVPYINA----KVTSMQVLPA-LVTLGSD---QNLNVKYASIDAFGA 966 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~-D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPa-Lv~LasD---~d~dVR~aaieAl~~ 966 (1188)
+......+-.+-.-+. +++|+|=+-+...|+.+++..|. ++.+...+-. |+.+.++ ++..||--+.+.|..
T Consensus 33 ~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 33 EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHH
Confidence 3344666666766666 57898888889999999887665 5667777776 7777653 445778777777777
Q ss_pred HHHhhchH
Q 001018 967 VAQHFKND 974 (1188)
Q Consensus 967 LA~~l~~e 974 (1188)
.+..|+.+
T Consensus 113 W~~~f~~~ 120 (141)
T cd03565 113 WADAFRGS 120 (141)
T ss_pred HHHHhCCC
Confidence 77776543
No 234
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=39.41 E-value=1.3e+02 Score=38.23 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHHHHHhhhChhhhhhh----hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCC
Q 001018 553 MYEERRLLVAQSCGELAEFVRPEIRDSL----ILSIVQQLVEDSATVVREAAARNLALLLPLFP 612 (1188)
Q Consensus 553 d~dEVRlLvAescg~La~~vg~e~r~sl----LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~ 612 (1188)
..|.+|+.+++=++.++++.-++....- +-.++--|.+|+.|.|+-.|.++|..+++.-+
T Consensus 492 pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 492 PPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred CCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 3344666666666666555333322222 22233446666666666666666666665443
No 235
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.30 E-value=82 Score=35.04 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=30.5
Q ss_pred hhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHh
Q 001018 232 LNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEIT 293 (1188)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~ 293 (1188)
|++|++......+....++.+..++++..+++-....+|...+.++.++...+.+.+++++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444444444444444555555555555554444555555555555544444444555544
No 236
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=38.82 E-value=50 Score=26.29 Aligned_cols=30 Identities=27% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAK 531 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~ 531 (1188)
..+..|.+|++++++.+|..++-++..++.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 357789999999999999999999988763
No 237
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.61 E-value=4.5e+02 Score=26.89 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=52.6
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhh----hhHHHHHHhhcCCcH--H--HHHHHHHHHHhhcccCCCchh
Q 001018 545 QCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDS----LILSIVQQLVEDSAT--V--VREAAARNLALLLPLFPNTDK 616 (1188)
Q Consensus 545 ~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~s----lLL~~LqqL~eD~e~--~--VR~aAAksL~~l~~~l~~~d~ 616 (1188)
.+..-+.+....|-+++..-+..+.+-.|...+.. -++.-|..++.++.. . ||+.+.+-+...+..|.....
T Consensus 46 ~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~ 125 (140)
T PF00790_consen 46 ALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPE 125 (140)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCC
Confidence 34444444555555555555554444444433332 266677776654322 2 999999999999999977777
Q ss_pred hhhHHHHHHHhc
Q 001018 617 YFKVEDLMFQLV 628 (1188)
Q Consensus 617 ~~qi~~~f~~Ll 628 (1188)
|..+...|..|-
T Consensus 126 ~~~i~~~y~~Lk 137 (140)
T PF00790_consen 126 LSLIQDTYKRLK 137 (140)
T ss_dssp GHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 777777776653
No 238
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=38.39 E-value=7.6e+02 Score=29.48 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=77.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-------hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh-
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE-------MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP- 574 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~-------ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~- 574 (1188)
++.-+..=++.|+..|+..+.+.++-|...... ..+-.+|+|++...|-...|||--.+.++...++-+-.+
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 334444445667777777666555555443332 123567889998888889999999999999888754111
Q ss_pred -hhhhhhhHHH--HHHhhcCCcHHHHHHHHHHHHhhcccCCC---chhhhhHHHHHHHhccCCCh
Q 001018 575 -EIRDSLILSI--VQQLVEDSATVVREAAARNLALLLPLFPN---TDKYFKVEDLMFQLVCDPSG 633 (1188)
Q Consensus 575 -e~r~slLL~~--LqqL~eD~e~~VR~aAAksL~~l~~~l~~---~d~~~qi~~~f~~Ll~D~s~ 633 (1188)
.+-.+.++.. +.+|+.-.+..||+-+-+-+.+|...-+. +.+.+-++..+..=++-.++
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteD 227 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTED 227 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcc
Confidence 1222222322 35577777888888877665555544332 22333455555444444333
No 239
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.05 E-value=2.1e+02 Score=36.09 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=52.4
Q ss_pred hhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 221 ENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
+.+.+.+.+.+|++.+. ..+...+.+..|.+.-..++.|+.-++.-+..+++.-++-.+.++.+..|+.
T Consensus 236 ~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie------- 304 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE------- 304 (581)
T ss_pred HHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------
Confidence 45566666667766554 3344455666666666667777766666666666655555555544444443
Q ss_pred cccccccccccCCCcccCchhhhhHHHHHHHHHHHHHHhh
Q 001018 301 GSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRA 340 (1188)
Q Consensus 301 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (1188)
..+++++.++.+++.+++
T Consensus 305 ----------------------~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 305 ----------------------EKEEEIEKLQKENDELKK 322 (581)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHH
Confidence 335667777777777765
No 240
>PRK03918 chromosome segregation protein; Provisional
Probab=38.03 E-value=3.8e+02 Score=35.52 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=4.7
Q ss_pred HHHHHHHHhh
Q 001018 196 ALRHYYYQYL 205 (1188)
Q Consensus 196 ~L~~~yr~~~ 205 (1188)
.|..+|..|.
T Consensus 596 ~l~~~~~~~~ 605 (880)
T PRK03918 596 ELEPFYNEYL 605 (880)
T ss_pred HhhhhHHHHH
Confidence 3444455554
No 241
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.02 E-value=1.4e+03 Score=32.30 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhh
Q 001018 604 LALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILS 667 (1188)
Q Consensus 604 L~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~ 667 (1188)
++.++..-+.++.+.+++.+|+.+++++-+.-..--...+.+.+...-.-..+++..+|.+|+.
T Consensus 129 ~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~ 192 (1266)
T KOG1525|consen 129 FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVK 192 (1266)
T ss_pred HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcc
Confidence 4455555556678999999999999887444333333333233332222223666677777643
No 242
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.88 E-value=73 Score=37.24 Aligned_cols=50 Identities=20% Similarity=0.081 Sum_probs=38.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh---hhhhhhHHHhhccCCCc
Q 001018 904 NILWEMVVSSNIDMKINAANLLKVIVPYINAKVT---SMQVLPALVTLGSDQNL 954 (1188)
Q Consensus 904 piL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l---s~~VlPaLv~LasD~d~ 954 (1188)
--+.+++.+++|.||-.++..+--++.. |-+.. +...++.|.+|+.|++.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc
Confidence 3467788999999999999888777665 33322 35678889999999887
No 243
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=37.72 E-value=1.7e+02 Score=35.32 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=62.6
Q ss_pred cccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh----hhhhhhhhHHHhhcc
Q 001018 875 ENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK----VTSMQVLPALVTLGS 950 (1188)
Q Consensus 875 ~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~----~ls~~VlPaLv~Las 950 (1188)
.+|.. |+...-.++......+.||-.+..-+.+..|+|=+-++.+|..++...|.. +.+....--|..|.+
T Consensus 24 enW~~-----IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 24 ENWSL-----ILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred ccHHH-----HHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh
Confidence 47887 555555666555777899999999999999999999999999999887764 334333334444444
Q ss_pred -CCCcchHHHHHHHHHHHHHhhch
Q 001018 951 -DQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 951 -D~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
-.+..|+...-..+...+..|+.
T Consensus 99 ~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 99 SKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444443
No 244
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=37.48 E-value=6e+02 Score=30.45 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh---------hhhhhh---------HHHhhccC-CCcchHHHHHH
Q 001018 902 VFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT---------SMQVLP---------ALVTLGSD-QNLNVKYASID 962 (1188)
Q Consensus 902 iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l---------s~~VlP---------aLv~LasD-~d~dVR~aaie 962 (1188)
=+|.+...+.+....||..++..+..+...+|.+.. ...+.+ .|.+|..+ .+...=+-+-.
T Consensus 176 W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~ 255 (372)
T PF12231_consen 176 WFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWS 255 (372)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHH
Confidence 344444445556669999999988888877776422 222222 25666666 33333222333
Q ss_pred HHHHHHH-h-hchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH------HHHH-HHHHHHHHhhc
Q 001018 963 AFGAVAQ-H-FKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE------RLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 963 Al~~LA~-~-l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~------~~r~-~IlP~L~~L~~ 1027 (1188)
++-.+.. . +..-...++.....+.....+++.+|..+..+|.+++-.+.+ ..+. -..|....+..
T Consensus 256 ~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred HHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCc
Confidence 3322221 1 222345566777777777788999999999999999865533 3333 45566555443
No 245
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.46 E-value=70 Score=36.61 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=36.6
Q ss_pred chhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 246 SDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
.+.++..+.+....++++|..+++++.++-.+++..+++.+...++++.++.+|+
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777777777777766666666666666666654444
No 246
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=37.23 E-value=1.2e+03 Score=31.62 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=52.4
Q ss_pred hccCCCcchHHHHHHHHHHHHHhhc---hHHHHHHH-HHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 001018 948 LGSDQNLNVKYASIDAFGAVAQHFK---NDMIVDKI-RVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIF 1023 (1188)
Q Consensus 948 LasD~d~dVR~aaieAl~~LA~~l~---~e~~~ekl-~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~ 1023 (1188)
.-+|.+..||+-+++++..+.-+.. .+++...+ +.++...--|+++.+|+.+.+++.-++.+++..---.++..+.
T Consensus 438 ~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~E 517 (1697)
T KOG3687|consen 438 FRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIE 517 (1697)
T ss_pred HHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHH
Confidence 4568899999999999877765432 33443332 2222223446788999999999999999998753334444444
Q ss_pred Hhhc
Q 001018 1024 QLSA 1027 (1188)
Q Consensus 1024 ~L~~ 1027 (1188)
.+++
T Consensus 518 A~~~ 521 (1697)
T KOG3687|consen 518 AVMA 521 (1697)
T ss_pred HHHh
Confidence 4443
No 247
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=36.92 E-value=5.4e+02 Score=27.59 Aligned_cols=127 Identities=14% Similarity=0.065 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhc-CchhHHHHHHHHH-HHHH-hhhChhhh
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINH-MYEERRLLVAQSC-GELA-EFVRPEIR 577 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~D-d~dEVRlLvAesc-g~La-~~vg~e~r 577 (1188)
+++..++..|..++.-+.|..++.-+....+..+ .+.++.+...+.+ +.| .+++.+ +.+. +++-. +
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W----~~~D~~~~~~~~~~~~~--~ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNW----ATCDSLCSKLLGPLLKK--H 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCH----HHHHHHTHHHHHHHHHH--H
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcc----hhhhHHHHHHHHHHHHh--h
Confidence 7788888999999998888876655444332222 2245555554443 334 233333 3322 22111 1
Q ss_pred hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 578 DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
..+.+.+.+.++++..-+|+++.-.+...... .....+......++.|++..|+.+..-.|
T Consensus 119 -~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L 179 (213)
T PF08713_consen 119 -PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWAL 179 (213)
T ss_dssp -GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45678888877777777777776555444433 34457888888899999999998775444
No 248
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.88 E-value=4.1e+02 Score=30.80 Aligned_cols=182 Identities=15% Similarity=0.186 Sum_probs=105.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhh--hhhhhHHHhhcc----CCCcchHHHHHHHHHHHHHh--hch
Q 001018 902 VFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTS--MQVLPALVTLGS----DQNLNVKYASIDAFGAVAQH--FKN 973 (1188)
Q Consensus 902 iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls--~~VlPaLv~Las----D~d~dVR~aaieAl~~LA~~--l~~ 973 (1188)
....|..+...+.+-|..-++..|..+...-+..... ..++|.+....+ .++..+.+.++.++..+... +..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 4444555777778888888888888886654332221 345555554333 35667778888888888753 333
Q ss_pred HHHHHHHHHHHHHHh-----cCC--ChhHHHHHHHHHHHhc--ccCCHHHHH-HHHHHHHHhhcCCCCChhhHHHHHHHH
Q 001018 974 DMIVDKIRVQMDAFL-----EDG--SHEATVAVVRALAVAV--PHTTERLRD-YLLSKIFQLSAVPSSSSDVMRRRERAN 1043 (1188)
Q Consensus 974 e~~~ekl~~~~~slL-----~D~--~~~vR~~vv~al~~l~--p~~~~~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk 1043 (1188)
-++..+..+.+...+ .++ +..+--.++.++.-+. +..-..+.. +++|.|..+..... |-.+..
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-------KEKvvR 258 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-------KEKVVR 258 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---------SHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-------cchHHH
Confidence 344455666666677 232 3455556666666553 222223444 58888888775332 223566
Q ss_pred HHHHHHHhhcc-cc--CchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHH
Q 001018 1044 AFCESIRALDA-TE--LSATSVRDFLLPAIQNLLKDADSLDPAHKEALEII 1091 (1188)
Q Consensus 1044 ~l~~a~~aL~~-~~--l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i 1091 (1188)
..+.+++.+.. .. .-+.++...++|.++.|.. ..--|++-.+.++-+
T Consensus 259 v~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~-rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 259 VSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE-RKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS-S--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc-CCCCCHHHHHHHHHH
Confidence 66677777653 33 4567788889999999887 566777777777665
No 249
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.82 E-value=1.7e+02 Score=27.67 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhh
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKT 277 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1188)
+..+.+.+..+.-.....+|-.+.++..-...+..++..+.++|..-..+|+.
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~ 61 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555555667777777777777888888888888888888876
No 250
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.54 E-value=3.8e+02 Score=31.08 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=62.1
Q ss_pred HhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHH
Q 001018 890 RFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 890 ~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~ 969 (1188)
..+...+.+.+.+|..+-+|+.|.. -|.. .+....+.-+.. .+..+..+.+-+|+-++..+...+..++.
T Consensus 65 ~~~~~~~d~v~yvL~li~dll~~~~--~~~~---~~~~~~~~~~~~-----~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 65 NKLSSNDDTVQYVLTLIDDLLSDDP--SRVE---LFLELAKQDDSD-----PYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp HHH---HHHHHHHHHHHHHHHH-SS--SSHH---HHHHHHH-TTH-------HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCH--HHHH---HHHHhcccccch-----hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3343458888999999999887655 2222 222322222111 33444457777799999999999999998
Q ss_pred hhchHHH--HHHHHHHHHHHhcCC----ChhHHHHHHHHHHHhc
Q 001018 970 HFKNDMI--VDKIRVQMDAFLEDG----SHEATVAVVRALAVAV 1007 (1188)
Q Consensus 970 ~l~~e~~--~ekl~~~~~slL~D~----~~~vR~~vv~al~~l~ 1007 (1188)
..+.... .+++.+.+.+|+.+. +.++...++++++.+.
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 7554322 256777777777762 3456677778888775
No 251
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=36.35 E-value=9.3e+02 Score=29.89 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH--HHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhcc
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE--RLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDA 1054 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~--~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~ 1054 (1188)
-|+..-+.+|+.-.+++.-.+-+-+++-.+..=+- .+.+ .++..|..+...+|...+ -.++..+.+.|+|.|.-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg---nV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG---NVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc---cchhHHHHHHHHHhccc
Confidence 44777788999888888888888888888765433 4555 566666665543332111 12357788899988763
Q ss_pred cc-----CchhhhhhhHHHHHH
Q 001018 1055 TE-----LSATSVRDFLLPAIQ 1071 (1188)
Q Consensus 1055 ~~-----l~~~~v~~~ilP~L~ 1071 (1188)
.. +-+.-+.+.|||.++
T Consensus 391 Pv~nka~~~~aGvteaIL~~lk 412 (604)
T KOG4500|consen 391 PVSNKAHFAPAGVTEAILLQLK 412 (604)
T ss_pred cCCchhhccccchHHHHHHHHH
Confidence 21 123335556777665
No 252
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.68 E-value=5.2e+02 Score=31.46 Aligned_cols=167 Identities=19% Similarity=0.154 Sum_probs=108.6
Q ss_pred HHHHhhhcccchhcchhh--HHhHhhHHHHHhhcCCChhhHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhh
Q 001018 462 QILADALPKIVPYVLINH--REELLPLIMCAIERHPDTSTRDSL-THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRT 538 (1188)
Q Consensus 462 ~lls~~lP~Ivp~V~~~~--R~ellPli~~aa~~h~~~~~R~~L-l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert 538 (1188)
-.++.-+|....+...+. |.-.+|--..++...-.++.+..+ +.=+..-.|+....||..+..++..+-... |...
T Consensus 15 ~kvg~k~~k~~nat~t~~kskaiil~eQ~~~~e~~~~~t~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l 93 (393)
T KOG2149|consen 15 LKVGKKLPKASNATNTEFKTKAIILPEQSVLAEDSGLATSKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAEL 93 (393)
T ss_pred hhhcccCCccccccchhhhhhhhccHHHHHHHhccCCccccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHH
Confidence 345666666666655553 333344433344443322222222 233334468899999999999999887763 3322
Q ss_pred ---HhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhh---hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCC
Q 001018 539 ---EMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEI---RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFP 612 (1188)
Q Consensus 539 ---~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~---r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~ 612 (1188)
-.+|++...+.+-|++-.||-...+-+-.+.....++. ..+++.+.+...+.--.+.||..+.+-|..++..++
T Consensus 94 ~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 94 QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 35678878889999999999988877766555544433 345566666778889999999999999999999998
Q ss_pred Cchh--hhhHHHHHHHhcc
Q 001018 613 NTDK--YFKVEDLMFQLVC 629 (1188)
Q Consensus 613 ~~d~--~~qi~~~f~~Ll~ 629 (1188)
+.-. -..+.+.|...+.
T Consensus 174 p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 174 DTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7532 2235566655444
No 253
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.30 E-value=3.5e+02 Score=29.76 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHhhhc
Q 001018 93 LAQEDVTKLKAELKKKS 109 (1188)
Q Consensus 93 ~a~e~I~~Lr~~l~~~~ 109 (1188)
+-++.-++|+..+...-
T Consensus 19 ~L~~en~kL~~~ve~~e 35 (193)
T PF14662_consen 19 KLADENAKLQRSVETAE 35 (193)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555554443
No 254
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.13 E-value=3.6e+02 Score=30.94 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=78.5
Q ss_pred HhHHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH
Q 001018 900 TMVFNILWEMVVSSN-----IDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~-----pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
-..||+++.-..++. +.++ .+|..+..+++.-|-.- +--.+...++..-.+..-+....+..+...+.++
T Consensus 110 la~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~ 184 (262)
T PF14225_consen 110 LALLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPN----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD 184 (262)
T ss_pred HHHHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCcc----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch
Confidence 347899998888887 4444 66777777775544333 3334556777777777788888888888887765
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH
Q 001018 975 MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
.-.+ +...++.+|+.+...+|..+++-+..+.|.++-+
T Consensus 185 ~~~~-~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 185 HEFQ-ILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred hHHH-HHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 4433 6667888898888899999999999998887553
No 255
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.06 E-value=2.1e+02 Score=33.63 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHH
Q 001018 258 EALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIER 337 (1188)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (1188)
+..++.+.+++.+.+.++..++.....+.+++.+|..+....+.++ +.. ..++..|..+...
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r-----------~~t-------~~Ei~~Lk~~~~~ 282 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR-----------GFT-------FKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CCC-------HHHHHHHHHHHHH
Confidence 3344455555555555555555555555556666665544333321 111 4566777777776
Q ss_pred Hhhhc
Q 001018 338 LRAKS 342 (1188)
Q Consensus 338 ~~~~~ 342 (1188)
++...
T Consensus 283 Le~l~ 287 (312)
T smart00787 283 LQSLT 287 (312)
T ss_pred HHHHh
Confidence 66543
No 256
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=33.82 E-value=4.5e+02 Score=30.29 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=50.9
Q ss_pred CCCCCCCCCCChHHHHHHHHhhccchHHHHHHHHHHhhhh-------hHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhh
Q 001018 184 DIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENE-------SLLKVNERLNHEKESLLKTKEISDGQISALTKS 256 (1188)
Q Consensus 184 e~W~dv~~~~P~~L~~~yr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 256 (1188)
..|.......+..+...|..-. ..++..-.....++. ++..+.+.+....+...+.+...+.++..+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~ye~el---~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 35 EELREKKGEEVSRIKEMYEEEL---RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HH---------HHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCcccccchhhHH---HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444443333445566665433 223333333333444 444444444444444444444555555566666
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 257 LEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
++......-+++++++.+++.+...++... +|+..|...|.
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~he---eEi~~L~~~~~ 152 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHE---EEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSTT--
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhccc
Confidence 655444444666777777777665544432 56666655443
No 257
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=33.44 E-value=5.8e+02 Score=34.71 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=8.8
Q ss_pred HHHHHhhhc----CCCCC
Q 001018 41 AIRLKEFFS----DPSHF 54 (1188)
Q Consensus 41 ~~~Lr~fFs----np~~f 54 (1188)
+.++=+||+ ||-+|
T Consensus 164 l~~vv~~f~I~veNP~~~ 181 (1074)
T KOG0250|consen 164 LDTVVDHFNIQVENPMFV 181 (1074)
T ss_pred HHHHHHHhCcCCCCcchh
Confidence 556667764 67665
No 258
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.33 E-value=3.4e+02 Score=26.80 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=21.5
Q ss_pred CChHHHHHHHHhhccc------hHHHHHHHHHHhhhhhHHHHhhhhh
Q 001018 193 VPDALRHYYYQYLSST------TEAAEEKIAMLRENESLLKVNERLN 233 (1188)
Q Consensus 193 ~P~~L~~~yr~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (1188)
+||.+-.....|-... ...........+||+..+++.+.|.
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~ 47 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP 47 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4666555555553321 1111222356677777777766664
No 259
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.24 E-value=2.3e+02 Score=33.35 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHhhhc
Q 001018 324 YEEEIKSLLKEIERLRAKS 342 (1188)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~ 342 (1188)
...++.....+++.++..+
T Consensus 118 l~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3445555566666666544
No 260
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.18 E-value=3.7e+02 Score=35.69 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCCchhHHH-hhhhhhhhhhhhHHHHhhhhHHHHHHHHHHhhh
Q 001018 67 VADPQSLLE-EKEALVEKLAITEYELRLAQEDVTKLKAELKKK 108 (1188)
Q Consensus 67 ~~D~~~~~~-~~~~~~ekvavle~ELR~a~e~I~~Lr~~l~~~ 108 (1188)
+.|...++- +|+-++||.--|--|+--++|-+-.|-..|.-.
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777665 788899999999999999999988887777543
No 261
>PF05536 Neurochondrin: Neurochondrin
Probab=33.16 E-value=1.1e+03 Score=29.88 Aligned_cols=261 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh-h
Q 001018 498 STRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE-I 576 (1188)
Q Consensus 498 ~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e-~ 576 (1188)
+.+...+.--..++|..++.+|.+ |+.-+.+.+........-.-.+++.+.=+.--|.+.... ++--++. .
T Consensus 1 ~~~~~~l~~c~~lL~~~~D~~rfa---gL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~-----~~~~~~~~~ 72 (543)
T PF05536_consen 1 EGQSASLEKCLSLLKSADDTERFA---GLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGS-----VPSDCPPEE 72 (543)
T ss_pred CCchHHHHHHHHHhccCCcHHHHH---HHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCC-----CCCCCCHHH
Q ss_pred hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchh---hhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccc
Q 001018 577 RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDK---YFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSK 653 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~---~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~ 653 (1188)
+.++=+.+|-.++.|++-.--...+..++.+.+.+..... ..++.+++..+..-+.+...-...+.+ |.++.....
T Consensus 73 ~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v-~~L~ei~~~ 151 (543)
T PF05536_consen 73 YLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAV-PALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCH-HHHHHHHHh
Q ss_pred hHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc
Q 001018 654 LDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP 733 (1188)
Q Consensus 654 ~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~ 733 (1188)
..+.....+.-+..-+... ..+.|. ...+.+..+++.+...+. ...+.+....+.
T Consensus 152 ~~~~~E~Al~lL~~Lls~~------------------~~~~~~--~~~~~l~~il~~La~~fs-----~~~~~~kfell~ 206 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRL------------------GQKSWA--EDSQLLHSILPSLARDFS-----SFHGEDKFELLE 206 (543)
T ss_pred CcchHHHHHHHHHHHHHhc------------------chhhhh--hhHHHHHHHHHHHHHHHH-----hhccchHHHHHH
Q ss_pred --hhhhhhhhcC-CCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 001018 734 --SSLLELYAGG-HIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYL 795 (1188)
Q Consensus 734 --~~ll~l~~~~-~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t 795 (1188)
..++...... ...+.+..|. .++...|..+. -.--.-.-|.........+.+.+|.+|.
T Consensus 207 ~L~~~L~~~~~~~~~~~~~~~W~-~~l~~gl~~iL--~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 207 FLSAFLPRSPILPLESPPSPKWL-SDLRKGLRDIL--QSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHhcCcCCccccccCChhhhH-HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhChHhh
No 262
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=33.14 E-value=4.3e+02 Score=31.79 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=55.3
Q ss_pred hhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 222 NESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
-+++.++.+.|.++-. +| --.++.|...+++-...|+.++...|++---.+.+. |-+.+||+-|..-|.|
T Consensus 423 lqsvqRELeVLSEQYS--QK-----CLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn---nRLaaEItrLRtlltg 492 (593)
T KOG4807|consen 423 LQSVQRELEVLSEQYS--QK-----CLENAHLAQALEAERQALRQCQRENQELNAHNQELN---NRLAAEITRLRTLLTG 492 (593)
T ss_pred HHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh---hHHHHHHHHHHHHhcc
Confidence 4455666666655421 01 123566677776655556555555544443322232 2356899999877776
Q ss_pred ccccccccccCCCcc-cCc-hhhhhHHHHHHHHHHHHHHhh
Q 001018 302 SHSVRNFATTNGDVI-QSQ-PVERYEEEIKSLLKEIERLRA 340 (1188)
Q Consensus 302 ~~s~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~ 340 (1188)
-+.|++---.+..+. -.+ ++...+.+|.-|..|+..++.
T Consensus 493 dGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkD 533 (593)
T KOG4807|consen 493 DGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKD 533 (593)
T ss_pred CCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 554433222221111 100 222335566666677766654
No 263
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.04 E-value=2.2e+02 Score=35.78 Aligned_cols=116 Identities=20% Similarity=0.134 Sum_probs=76.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh-------------hC
Q 001018 507 LFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF-------------VR 573 (1188)
Q Consensus 507 l~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~-------------vg 573 (1188)
....|-..++..|..|+.-| +.+---..|+|+|-..+. +.|+.-++..|-.+.-| +-
T Consensus 212 It~a~~g~~~~~r~eAL~sL-------~TDsGL~~LlPyFv~fIa---e~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSL-------ETDSGLQQLLPYFVTFIA---EGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhh-------ccCccHHHHHHHHHHHHh---hheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 34455668888888877543 334445789999988877 45555544444333222 22
Q ss_pred hhhhhhhhHHHHHH------hh----cCCcHHHHHHHHHHHHhhcccCCCchh--hhhHHHHHHHhccCCC
Q 001018 574 PEIRDSLILSIVQQ------LV----EDSATVVREAAARNLALLLPLFPNTDK--YFKVEDLMFQLVCDPS 632 (1188)
Q Consensus 574 ~e~r~slLL~~Lqq------L~----eD~e~~VR~aAAksL~~l~~~l~~~d~--~~qi~~~f~~Ll~D~s 632 (1188)
-+-+-+.|+|.+.. |+ -|..|.+|+-||+-+..||..+++... +.-|...+...+.|+.
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 34556677777743 33 378999999999999999999986532 3346667777777773
No 264
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.01 E-value=4.3e+02 Score=31.11 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=28.7
Q ss_pred hhhhhhhhHHHHhhhhHHHHHHHHHHhhhccC
Q 001018 80 LVEKLAITEYELRLAQEDVTKLKAELKKKSDS 111 (1188)
Q Consensus 80 ~~ekvavle~ELR~a~e~I~~Lr~~l~~~~~~ 111 (1188)
..++..-+|=+|+.+.|.|..||-+|..+.+.
T Consensus 95 L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeL 126 (306)
T PF04849_consen 95 LSERNEALEEQLGAALEQVEQLRHELSMKDEL 126 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999988654
No 265
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=32.92 E-value=6.6e+02 Score=33.97 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=113.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch-------
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN------- 973 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~------- 973 (1188)
.+-.++..--.|.-|.||..++..+.++....+.. ...+|+-++++--.|+-+.+|.+...++-.=-..+..
T Consensus 472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~-~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~ 550 (1529)
T KOG0413|consen 472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR-EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL 550 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh
Confidence 34555666667899999999999999988776543 3467888888888888888886665554210000000
Q ss_pred ---------H----------HHHHH--HHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCCC
Q 001018 974 ---------D----------MIVDK--IRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 974 ---------e----------~~~ek--l~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN~ 1031 (1188)
+ ...++ +.+.+..+-.|.-.+++-..++-+...--+++..-.- .++-.|..+++-+.+
T Consensus 551 l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~v 630 (1529)
T KOG0413|consen 551 LLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMV 630 (1529)
T ss_pred cCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcch
Confidence 0 11122 1222223343666788899999999988888876555 567888888886655
Q ss_pred ChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccCCCChHH
Q 001018 1032 SSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAH 1084 (1188)
Q Consensus 1032 ~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~ 1084 (1188)
.-|...+.+|-+...+=..++ .+++.-|-+|.+..+|.++.-.+|
T Consensus 631 ----svrk~~~~Sltel~~~~pr~~----~~~~~wl~~li~~~~d~es~v~e~ 675 (1529)
T KOG0413|consen 631 ----SVRKTGADSLTELMLRDPRLF----SLSSKWLHTLISMLNDTESDVTEH 675 (1529)
T ss_pred ----HHHHHHHHHHHHHHhhCchhh----hhhHHHHHHHHHHHhccHHHHHHH
Confidence 227788888888665433333 455566777777777777655444
No 266
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.87 E-value=1.9e+02 Score=36.29 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=48.5
Q ss_pred ccchhhHHhhhhHHHHHhhc------c-CCCCcHHHHHHHHHHHHHHHHhhCHHHHH--HHHHHHHHHHhCCcc
Q 001018 747 WPAFEWMHVDCFPGLIQLAC------L-LPEKEDNLRNRITKFLLAVSKQFGDSYLT--HIMLPVFMVAVGDNA 811 (1188)
Q Consensus 747 w~~~~wl~~~lLP~l~~LA~------~-~~D~sWrVR~Aia~~l~~La~~fG~e~t~--~~LlP~fl~lL~D~~ 811 (1188)
-+.++--..+++|.++.+.- . ..|.+|.+|--.|+.+..+|..||..+-. ..+.-.|...+.|+.
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566778888865431 1 35899999999999999999999977654 466777777777863
No 267
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.09 E-value=1.1e+02 Score=31.31 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=15.2
Q ss_pred hhhhhhhhhhhhhhhcchhhhhhhhhhHHHHh
Q 001018 230 ERLNHEKESLLKTKEISDGQISALTKSLEALH 261 (1188)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 261 (1188)
..|..++..+....+.+..++..+..+++...
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~ 37 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQA 37 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555554443
No 268
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=31.84 E-value=40 Score=24.90 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcccCCCchhhhhHHHHHHHhcc
Q 001018 596 VREAAARNLALLLPLFPNTDKYFKVEDLMFQLVC 629 (1188)
Q Consensus 596 VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~ 629 (1188)
||++|+..|+.+.. + +.++.+..+++
T Consensus 1 VR~~Aa~aLg~igd----~----~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----P----RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----H----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----H----HHHHHHHHHhc
Confidence 78999998888764 2 45555555444
No 269
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=31.77 E-value=54 Score=25.32 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=22.9
Q ss_pred hhhhhhHHHhhccCCCcchHHHHHHHHHHHH
Q 001018 938 SMQVLPALVTLGSDQNLNVKYASIDAFGAVA 968 (1188)
Q Consensus 938 s~~VlPaLv~LasD~d~dVR~aaieAl~~LA 968 (1188)
....+|.|+.|.+.++.+++..+..+|..|+
T Consensus 10 ~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 10 DAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3447777888777778888888888777654
No 270
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.30 E-value=1.5e+02 Score=29.61 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhh
Q 001018 266 DKENLILDLKKTTEHQRRELNDCTAEITALKM 297 (1188)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~ 297 (1188)
++++..+.+.+......+.+++++++|..+..
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655566666666666666543
No 271
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=31.11 E-value=6.9e+02 Score=28.68 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE 535 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ 535 (1188)
++.-..+++-|.++..|...+.-+..+.+.++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 444445555555555555554444444444443
No 272
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.02 E-value=8.5e+02 Score=27.87 Aligned_cols=61 Identities=8% Similarity=-0.056 Sum_probs=42.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhCchh----hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Q 001018 508 FNLIKRPDEKQRRIIMDACVTLAKNVGEMR----TEMELLPQCWEQINHMYEERRLLVAQSCGELAE 570 (1188)
Q Consensus 508 ~nLiKdddp~vRr~aa~~l~~iA~~lg~er----t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~ 570 (1188)
-.-+.++++.+|..++.-+..+...++++. ...-|+.|+-.-++ |...+.-. ...|..|..
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~ 69 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVK 69 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHh
Confidence 345678999999999999999999998642 23446666655453 55555554 677777773
No 273
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.99 E-value=1.4e+02 Score=38.26 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=21.9
Q ss_pred CCcccceeccccccCCCCCCCCCCCCCCChHHHHHHHHh
Q 001018 166 GYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQY 204 (1188)
Q Consensus 166 ~Ykltsitf~dE~~dqd~e~W~dv~~~~P~~L~~~yr~~ 204 (1188)
+-|+.+.||.+|- ..++|..++++|++.
T Consensus 145 ~qr~~al~~aee~-----------~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 145 AQRNAALTKAEEH-----------SGNIEERTRKLEEQL 172 (916)
T ss_pred HHHHHHHHHHHHh-----------hccHHHHHHHHHHHH
Confidence 4567788888876 457889999999963
No 274
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=30.67 E-value=1.5e+03 Score=30.59 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhh
Q 001018 760 GLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLAT 839 (1188)
Q Consensus 760 ~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~ 839 (1188)
.|+++..-+.+....||.++...+..++..-| +...|..+-++-.
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~---f~~aL~~va~~~~-------------------------------- 49 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELTEG---FGVALAEVAANKD-------------------------------- 49 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccchH---HHHHHHHHHhCcc--------------------------------
Q ss_pred hchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHH--HhhhchhhHHHhHHHHHHHhhcCCChhH
Q 001018 840 MGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAV--RFLCTFEEHHTMVFNILWEMVVSSNIDM 917 (1188)
Q Consensus 840 ~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai--~~Lg~~e~~~~~iLpiL~~lv~D~~pnV 917 (1188)
+-|| -|+-..-+|+|.+. .+|+. ..-. .-.+..+....+|...+..+..|++--+
T Consensus 50 ---------~sl~---lRQ~A~v~L~~yie-----~hW~~------~~E~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki 106 (1005)
T KOG2274|consen 50 ---------ASLP---LRQIALVLLKRYIE-----KHWSP------NFEAFRYPLIVSEEVKALIREQLLNLLDDSNSKI 106 (1005)
T ss_pred ---------cCch---HHHHHHHHHHHHHH-----HhCCC------hHhhccCCCcccHHHHHHHHHHHHhhhhcccccc
Q ss_pred HHHHHHHHHHHHhh-hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHH------HhcC
Q 001018 918 KINAANLLKVIVPY-INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDA------FLED 990 (1188)
Q Consensus 918 R~naak~L~~L~~~-ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~s------lL~D 990 (1188)
|-.++-....|+.+ ...+|- +++|.+..+.++.|-+--..+.++++.+.--+-.++.-.-..+.+-+ +..-
T Consensus 107 ~~~vay~is~Ia~~D~Pd~Wp--Elv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~ 184 (1005)
T KOG2274|consen 107 RSAVAYAISSIAAVDYPDEWP--ELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIV 184 (1005)
T ss_pred chHHHHHHHHHHhccCchhhH--HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccc
Q ss_pred CChhHHHHHH-----HHHHHhcccCCHHHHHHHHHHHHHhhc----------CCCCChhhHHHHHHHHHHHHHHHhhc
Q 001018 991 GSHEATVAVV-----RALAVAVPHTTERLRDYLLSKIFQLSA----------VPSSSSDVMRRRERANAFCESIRALD 1053 (1188)
Q Consensus 991 ~~~~vR~~vv-----~al~~l~p~~~~~~r~~IlP~L~~L~~----------vpN~~~~~~~R~~vAk~l~~a~~aL~ 1053 (1188)
..-..|.-++ .++..++.+.....+....-++..+.. .-|-.++..-|.++.|.+-..+..+.
T Consensus 185 ~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp 262 (1005)
T KOG2274|consen 185 YSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFP 262 (1005)
T ss_pred cchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhH
No 275
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=1.4e+03 Score=30.25 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=72.0
Q ss_pred HhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhh
Q 001018 539 EMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYF 618 (1188)
Q Consensus 539 ~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~ 618 (1188)
..-+.|++.....||.+-|-+-+|-+...|..-.+.+... -.+.||.++.-.....|.+|++-|.+++-.-|....
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-- 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-- 318 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 4567888888889999999999998877766443332221 367788899999999999999999999977765421
Q ss_pred hHHHHHHHhccCCChhHHHHHHHhh
Q 001018 619 KVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 619 qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
-.-.-+-+|+.|.+-.+..-|+..+
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtL 343 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTL 343 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHH
Confidence 1222334577777766666665444
No 276
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=30.22 E-value=6.3e+02 Score=30.30 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-------hhhHhhHHHHHHHHh-hcCchhHHHHHHHHHHHHHh
Q 001018 499 TRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE-------MRTEMELLPQCWEQI-NHMYEERRLLVAQSCGELAE 570 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~-------ert~~ELLP~l~eli-~Dd~dEVRlLvAescg~La~ 570 (1188)
..++|-++...|..||-..+-. +...|-+.+.. .....-.+|-|-++. ++..+-..+-+|=++..++.
T Consensus 69 ~~~elp~lt~~l~SdDie~q~q----av~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaS 144 (526)
T COG5064 69 FYSELPQLTQQLFSDDIEQQLQ----AVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS 144 (526)
T ss_pred hhhhhHHHHHHHhhhHHHHHHH----HHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhcc
Confidence 4567777777777776655433 33444444442 233445777777766 33333333334444444442
Q ss_pred hhChhh---hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC
Q 001018 571 FVRPEI---RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN 613 (1188)
Q Consensus 571 ~vg~e~---r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~ 613 (1188)
=..... -..--+|.|.||..+.+..||+.++=.|+.++.--+.
T Consensus 145 Gtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred CcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 111110 0112489999999999999999999999998875543
No 277
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=29.86 E-value=2.1e+02 Score=26.30 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHHHHhhHHHHHHHhhhh
Q 001018 269 NLILDLKKTTEHQRRELNDC 288 (1188)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~ 288 (1188)
..+.+++.+++.+++++..+
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555433
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.47 E-value=1.7e+02 Score=36.23 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=12.8
Q ss_pred HHHHhhhhhHHHHhhhhhh
Q 001018 216 IAMLRENESLLKVNERLNH 234 (1188)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~ 234 (1188)
-.+..+|+.|+++|++|.+
T Consensus 76 ~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 76 AKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777654
No 279
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=29.46 E-value=7.1e+02 Score=30.17 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHH
Q 001018 195 DALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDL 274 (1188)
Q Consensus 195 ~~L~~~yr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 274 (1188)
|.|+...-+. -.+.++|-+.-.| ++..+.|....-..++.+..+..++.+.+.+.+.++....+|.+.+
T Consensus 81 ~qlr~~rtel----~~a~~~k~~~e~e-------r~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~l 149 (499)
T COG4372 81 PQLRALRTEL----GTAQGEKRAAETE-------REAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDL 149 (499)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 3455566654444 3344444444444455566666677777777777777777777777
Q ss_pred HhhHHHHHHHhhhhHHHHhhh
Q 001018 275 KKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 275 ~~~~~~~~~~l~~~~~e~~~l 295 (1188)
.+.+-.+-.+...+.++..||
T Consensus 150 qtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 150 QTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 766544433333344555554
No 280
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=29.29 E-value=3.6e+02 Score=28.24 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=74.9
Q ss_pred CCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH---HHH--HHHHHHHHh
Q 001018 951 DQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER---LRD--YLLSKIFQL 1025 (1188)
Q Consensus 951 D~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~---~r~--~IlP~L~~L 1025 (1188)
....+||..+.-++..+. ....+.+.+++...+..++.++.+.-.+.++.+++.+-|..+.- +.. -+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 456678888877777775 44456788999999999998887778888888899888877432 221 356666666
Q ss_pred hc--CCCCChhhHHHHHHHHHHHHHHHhhcccc-CchhhhhhhHHHHHHHHHh
Q 001018 1026 SA--VPSSSSDVMRRRERANAFCESIRALDATE-LSATSVRDFLLPAIQNLLK 1075 (1188)
Q Consensus 1026 ~~--vpN~~~~~~~R~~vAk~l~~a~~aL~~~~-l~~~~v~~~ilP~L~~L~~ 1075 (1188)
+. ..+ ..+..++++++.+= |.+ --...|.++-.+.|+.+.+
T Consensus 95 ~~~~~~~--------~~~~~~~lell~aA-c~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 95 ASRKSKD--------RKVQKAALELLSAA-CIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp HH-CTS---------HHHHHHHHHHHHHH-TTSHHHHHCCHHHCHHHHHHHTT
T ss_pred HhcccCC--------HHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHc
Confidence 65 222 23455666666531 111 1233455566788888774
No 281
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=28.98 E-value=62 Score=39.46 Aligned_cols=45 Identities=31% Similarity=0.300 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHcCCcccceeccccccCCCCCC-CCCCCCCCC-hHHHHHHH
Q 001018 154 LNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDI-WQNTPARVP-DALRHYYY 202 (1188)
Q Consensus 154 LN~lv~eYLl~~~Ykltsitf~dE~~dqd~e~-W~dv~~~~P-~~L~~~yr 202 (1188)
+||||=-||-.-||--||.||-.|-.=++++. | ..+| -+|..+--
T Consensus 8 vN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~----~~vp~gaLi~ivQ 54 (524)
T KOG0273|consen 8 VNFLVWRYLQESGFSHSAFTFGIETGISQSNING----SLVPPGALISIVQ 54 (524)
T ss_pred HHHHHHHHHHHcCcceeeEEeeecccccccCCCc----cccChHHHHHHHH
Confidence 89999999999999999999999998777753 4 3345 45655543
No 282
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.55 E-value=3e+02 Score=35.40 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=84.3
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
.|.-.+..+-.|-.++.--.|.+|-++--.|.-+.. ..-+-.|+-.|..++.|.|.+|-|.+|.|+|.+..--.+.
T Consensus 634 eeig~eM~lR~f~h~l~yge~~iRravPLal~llsv----SNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 634 EEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSV----SNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNA 709 (878)
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc----CCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchH
Confidence 455668889999999998999999988877776642 2223467888999999999999999999999887544433
Q ss_pred HHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHhcccC
Q 001018 975 MIVDKIRVQMDA-FLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 975 ~~~ekl~~~~~s-lL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
-+ -++..|+-+ +.+|++...-+.+++.|.-++..+
T Consensus 710 Rl-a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGt 745 (878)
T KOG2005|consen 710 RL-AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGT 745 (878)
T ss_pred HH-HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCc
Confidence 33 456666666 588998877777888887776543
No 283
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.40 E-value=1.9e+02 Score=31.97 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=8.1
Q ss_pred HHcCCcccceeccc
Q 001018 163 LLAGYRLTAMTFYE 176 (1188)
Q Consensus 163 l~~~Ykltsitf~d 176 (1188)
+.+|.++|-+...+
T Consensus 50 l~~G~~v~vl~~~~ 63 (206)
T PRK10884 50 LNAGEEVTLLQVNA 63 (206)
T ss_pred EcCCCEEEEEEEcC
Confidence 34677776665443
No 284
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=28.33 E-value=2.4e+02 Score=29.77 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=14.7
Q ss_pred HHHHHH-hhcCCcHHHHHHHHHHHHhhccc
Q 001018 582 LSIVQQ-LVEDSATVVREAAARNLALLLPL 610 (1188)
Q Consensus 582 L~~Lqq-L~eD~e~~VR~aAAksL~~l~~~ 610 (1188)
|+.|-+ |-.+.+|.+|..|.|-|+.|++.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGAL 41 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGAL 41 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhcccc
Confidence 444433 34445566666666655555443
No 285
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=28.33 E-value=9.3e+02 Score=31.20 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHH---HhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHH
Q 001018 914 NIDMKINAANLLKVI---VPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK---NDMIVDKIRVQMDAF 987 (1188)
Q Consensus 914 ~pnVR~naak~L~~L---~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~---~e~~~ekl~~~~~sl 987 (1188)
..++|-++.-.|..+ +..+....-...|.-.|+.|-.||+..|.-++..||--+.-.++ ..|+......++.+.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 344555554444333 44444455566677777777799999999999999966665443 456667788899999
Q ss_pred hcCCChhHHHHHHHHHHHhcccCCHHH
Q 001018 988 LEDGSHEATVAVVRALAVAVPHTTERL 1014 (1188)
Q Consensus 988 L~D~~~~vR~~vv~al~~l~p~~~~~~ 1014 (1188)
+.|+.|+.|-..+..+.-++=+.+..+
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 999999999888888888776665554
No 286
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=28.26 E-value=1.8e+02 Score=29.09 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=9.2
Q ss_pred CCChHHHHHHH
Q 001018 192 RVPDALRHYYY 202 (1188)
Q Consensus 192 ~~P~~L~~~yr 202 (1188)
-+||.++++||
T Consensus 52 ~~dp~~~klfr 62 (118)
T PF13815_consen 52 FVDPNFLKLFR 62 (118)
T ss_pred CCCHHHHHHHH
Confidence 45799999999
No 287
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=27.91 E-value=5.7e+02 Score=27.22 Aligned_cols=21 Identities=33% Similarity=0.184 Sum_probs=15.7
Q ss_pred hhhhhHHHHhhhhhhhhhhhh
Q 001018 220 RENESLLKVNERLNHEKESLL 240 (1188)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~ 240 (1188)
-||..+.+.+++-+.|...+.
T Consensus 49 ien~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 49 IENQQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887766555
No 288
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.67 E-value=4.4e+02 Score=36.09 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=8.9
Q ss_pred HHHhhhhhHHHHhhhhhh
Q 001018 217 AMLRENESLLKVNERLNH 234 (1188)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~ 234 (1188)
..+..||...+..++..+
T Consensus 363 ~~~~k~e~~~~~~~e~~~ 380 (1293)
T KOG0996|consen 363 EEVEKNEAVKKEIKERAK 380 (1293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555554444433
No 289
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.47 E-value=1.1e+02 Score=29.08 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcccccccccc
Q 001018 259 ALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFA 309 (1188)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~ 309 (1188)
.+.+++++++...+.|-+.++..+.|...+..|..=|.+.|++..+...+.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~ 70 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555566666666677777777778888888888888765544444
No 290
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=27.20 E-value=1.8e+02 Score=30.55 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=66.9
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhh-hhhhhhHHHhhcc--CCCcchHHHHHHHHHHHH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVT-SMQVLPALVTLGS--DQNLNVKYASIDAFGAVA 968 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~l-s~~VlPaLv~Las--D~d~dVR~aaieAl~~LA 968 (1188)
.+...+.|-..+-..+.+..++-..++...+..+=++ +|.+.. ...+++.+..+++ -.+..+-.++.+.|.
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~--- 113 (157)
T PF11701_consen 37 REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS--- 113 (157)
T ss_dssp HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH---
Confidence 3666778888888888777777788888888777544 444443 5667777787777 666666666666654
Q ss_pred HhhchHHHH----HHHHHHHHHHhc-CCChh-HHHHHHHHHHH
Q 001018 969 QHFKNDMIV----DKIRVQMDAFLE-DGSHE-ATVAVVRALAV 1005 (1188)
Q Consensus 969 ~~l~~e~~~----ekl~~~~~slL~-D~~~~-vR~~vv~al~~ 1005 (1188)
..+..+.-. ++-.+.+...++ +++.. +|+-.+-.|++
T Consensus 114 aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 114 AACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 444555444 444444444442 23334 66666666655
No 291
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.17 E-value=8.1e+02 Score=29.36 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCc--hhhHhh-HHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh----hhhhhhHHHHHH
Q 001018 515 DEKQRRIIMDACVTLAKNVGE--MRTEME-LLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE----IRDSLILSIVQQ 587 (1188)
Q Consensus 515 dp~vRr~aa~~l~~iA~~lg~--ert~~E-LLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e----~r~slLL~~Lqq 587 (1188)
++..|..+.+.+-.++..+.- +-..-. +.|.+. ++++...++|-++|...|..++--+.. +...-+-+++..
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 455556666666665554432 111112 444344 888999999999999999888443221 112234555667
Q ss_pred hhcCCcHHHHHHHHHHHHhhcccCCCch-hhh--hHHHHHHHhccCCChhHHHH
Q 001018 588 LVEDSATVVREAAARNLALLLPLFPNTD-KYF--KVEDLMFQLVCDPSGVVVET 638 (1188)
Q Consensus 588 L~eD~e~~VR~aAAksL~~l~~~l~~~d-~~~--qi~~~f~~Ll~D~s~~Vr~a 638 (1188)
|..|..-.||.+|--.+..+....++.. .+. .-..++.+.++++...|+.-
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lk 228 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLK 228 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHH
Confidence 8899999999999988888887776531 111 12456666777765555543
No 292
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.14 E-value=4.6e+02 Score=31.54 Aligned_cols=84 Identities=19% Similarity=0.383 Sum_probs=48.7
Q ss_pred chhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhH
Q 001018 246 SDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYE 325 (1188)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~ 325 (1188)
...|+..+.....+.+..+.+.+...++.-+.+....++|+.+.+++...|.+|+.-+++ + +++. .+-+.+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~--m--tD~s-----Plv~IK 334 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS--M--TDGS-----PLVKIK 334 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C--CCCC-----HHHHHH
Confidence 344455555555555666666666666666667777777877778888877777753311 1 1211 222345
Q ss_pred HHHHHHHHHHHHH
Q 001018 326 EEIKSLLKEIERL 338 (1188)
Q Consensus 326 ~~~~~l~~~~~~~ 338 (1188)
..+.+|..|+-..
T Consensus 335 qAl~kLk~EI~qM 347 (359)
T PF10498_consen 335 QALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666665533
No 293
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=26.92 E-value=56 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.7
Q ss_pred HHHHHHHhhhcchhcHHHHHHH
Q 001018 10 NCVVNFLLEEKYLLTAFELLQE 31 (1188)
Q Consensus 10 ~~va~~LL~~~~~LTAlEl~~E 31 (1188)
--|.+||.+.+|.-||..|..|
T Consensus 5 ~lI~~YL~~~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 5 QLIYDYLVENGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHhc
Confidence 4688999999999999999876
No 294
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.77 E-value=3.4e+02 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=15.6
Q ss_pred hHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc
Q 001018 581 ILSIVQQLVEDSATVVREAAARNLALLLPLFPNT 614 (1188)
Q Consensus 581 LL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~ 614 (1188)
+...|+...+.+ .+|+.+.+.-..+...++++
T Consensus 57 I~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 57 IMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 333444433333 55555555555555555554
No 295
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.65 E-value=1.6e+02 Score=27.80 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=44.3
Q ss_pred hhhhHHHHHHh-hcCCcHHHHHHHHHHHHhhcccCCCchh--hhhHHHHHHHhccCCChhHHHHHHHh
Q 001018 578 DSLILSIVQQL-VEDSATVVREAAARNLALLLPLFPNTDK--YFKVEDLMFQLVCDPSGVVVETTFKE 642 (1188)
Q Consensus 578 ~slLL~~LqqL-~eD~e~~VR~aAAksL~~l~~~l~~~d~--~~qi~~~f~~Ll~D~s~~Vr~aa~~~ 642 (1188)
...+|.||+.+ ..-....||+.+.+++..+....++..+ ...++.++.....|.+..+...|.+.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 44567777775 5566888888888888888876654432 34567777777777777666666443
No 296
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.61 E-value=1.7e+02 Score=37.38 Aligned_cols=130 Identities=13% Similarity=0.227 Sum_probs=68.4
Q ss_pred hhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh-chhhHHHhHHHHHHHhhcCCChhHHHH-
Q 001018 843 LPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC-TFEEHHTMVFNILWEMVVSSNIDMKIN- 920 (1188)
Q Consensus 843 LP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg-~~e~~~~~iLpiL~~lv~D~~pnVR~n- 920 (1188)
.|.+..|||- |++....+.+.- ++..++.|-.+.-+..++ .+..++..+|.+|..+.....++.=..
T Consensus 415 ~PvVa~GVL~----------wi~~~l~~~~~~-~~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~ 483 (584)
T PF04858_consen 415 YPVVAMGVLR----------WIESFLTDPSYF-SSITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGDELDILV 483 (584)
T ss_pred CChhhHHHHH----------HHHHHhcCcchh-hhccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCCcccHHH
Confidence 6667677765 444443322110 111134552333334454 467788888888888887555433221
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhHHHhhcc-----CC-CcchHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 001018 921 AANLLKVIVPYINAKVTSMQVLPALVTLGS-----DQ-NLNVKYASIDAFGAVAQHFKNDMIVDKIRVQM 984 (1188)
Q Consensus 921 aak~L~~L~~~ig~~~ls~~VlPaLv~Las-----D~-d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~ 984 (1188)
....-+.+...+=.=.-...|+|.|..+.+ +- .-.+|||+.+-+..++.-.+.+|+ ..+.+.+
T Consensus 484 ~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii~PPYS~~Fv-~~~l~ll 552 (584)
T PF04858_consen 484 QLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEIIGPPYSPEFV-QLFLPLL 552 (584)
T ss_pred HHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Confidence 111111111111111224577888776554 22 235788888888888888887554 4344443
No 297
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=26.47 E-value=2.4e+02 Score=31.66 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHHhCchhhHhhHHHHHHHH-hhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHH
Q 001018 525 ACVTLAKNVGEMRTEMELLPQCWEQ-INHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARN 603 (1188)
Q Consensus 525 ~l~~iA~~lg~ert~~ELLP~l~el-i~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAks 603 (1188)
-|.++|.++..-.-...|+|.+... -++.-|++|.+.+-.++- ...+.....++++.++++.|++..||.++.-.
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~----~k~~~~~~~if~i~E~~l~d~e~fV~KAigWa 177 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVY----KKKTLDLLEIFEIIELLLGDKEFFVQKAIGWA 177 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHH----hcCccchhHHHHHHHHHccChHHHHHHHHHHH
Confidence 3556666655555666777765332 233457777766554433 33333444578999999999999999999888
Q ss_pred HHhhcc
Q 001018 604 LALLLP 609 (1188)
Q Consensus 604 L~~l~~ 609 (1188)
|..++.
T Consensus 178 Lrq~~k 183 (222)
T COG4912 178 LRQIGK 183 (222)
T ss_pred HHHHHh
Confidence 887776
No 298
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=3e+02 Score=38.54 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh--hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR--TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er--t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~ 574 (1188)
...|.+-.+.=..++.+-.|..|+.....+...+|+.. .-.+++|++.|+.+|+.|+|--++..-.-.+-..+|.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 66666666666778889999999999999999999854 4567999999999999999998877744444444553
No 299
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.72 E-value=2.4e+02 Score=26.19 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 262 RDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
+-|++++.+|.++..+-+.+.+.-...+..|..|+.++.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~ 43 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIK 43 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555666666665555444444445555555544433
No 300
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=25.71 E-value=3.4e+02 Score=29.85 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCCCCCCCC-CCCChHHHHHHHHhhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhh
Q 001018 181 QNLDIWQNTP-ARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALT 254 (1188)
Q Consensus 181 qd~e~W~dv~-~~~P~~L~~~yr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 254 (1188)
||=+-|-=+- .+.. .=-.+|++|..-+..-++.-|. +-.|+.+|..+.+.-...+.....|.
T Consensus 70 q~k~fWRViKt~d~~-~AE~~Y~~F~~Qt~~LA~~eir-----------R~~LeAQka~~eR~ia~~~~ra~~Lq 132 (192)
T PF11180_consen 70 QQKAFWRVIKTQDEA-RAEAIYRDFAQQTARLADVEIR-----------RAQLEAQKAQLERLIAESEARANRLQ 132 (192)
T ss_pred ecCceeEeeecCChh-hHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445675442 2211 2257899998766555544443 45666666544433333333333333
No 301
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.70 E-value=4.8e+02 Score=25.47 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=22.1
Q ss_pred cCCCcchHHHHHHHHHHHHHhhchHHH
Q 001018 950 SDQNLNVKYASIDAFGAVAQHFKNDMI 976 (1188)
Q Consensus 950 sD~d~dVR~aaieAl~~LA~~l~~e~~ 976 (1188)
.+++|+|.+.++..+..|...+|..+.
T Consensus 47 ~~~~~~~~lkaL~lLe~lvkN~g~~f~ 73 (115)
T cd00197 47 NNKNPHVVLKALTLLEYCVKNCGERFH 73 (115)
T ss_pred cCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence 456899999999999999988887654
No 302
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.34 E-value=6.4e+02 Score=34.24 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 001018 703 MMAELLPFMQKNA 715 (1188)
Q Consensus 703 ~l~~LLP~i~~~l 715 (1188)
.+..++|.+|..+
T Consensus 1040 ~f~~~F~~lf~~~ 1052 (1179)
T TIGR02168 1040 QVNENFQRVFPKL 1052 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.32 E-value=4.8e+02 Score=25.51 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=48.1
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh----hhhhhhHHH------hhccCCCcchHHHHHHHHHH
Q 001018 897 EHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT----SMQVLPALV------TLGSDQNLNVKYASIDAFGA 966 (1188)
Q Consensus 897 ~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l----s~~VlPaLv------~LasD~d~dVR~aaieAl~~ 966 (1188)
.....++..++.-+.++.|.|-+-+...|+.+++..|.... +...+--+. ..+.|.+..||..+.+.+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 44577999999999999999999999999999998886532 222222221 12345566666666655544
Q ss_pred H
Q 001018 967 V 967 (1188)
Q Consensus 967 L 967 (1188)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 3
No 304
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.21 E-value=5e+02 Score=35.39 Aligned_cols=124 Identities=20% Similarity=0.158 Sum_probs=90.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHH-HHHhhcCchhHHHHHHHHHHHHHhh---hChhhhhhhhHH---
Q 001018 511 IKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQC-WEQINHMYEERRLLVAQSCGELAEF---VRPEIRDSLILS--- 583 (1188)
Q Consensus 511 iKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l-~eli~Dd~dEVRlLvAescg~La~~---vg~e~r~slLL~--- 583 (1188)
++|=.|.-|-..++.++.--+..+.-....-.|-++ |-+ .|++.+||+.+..+|..|-.. .+. -.++.+
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtL-sDk~~~VRl~~lkaL~~L~e~~~~~~~---L~lFtsRFK 371 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTL-SDKNGTVRLRCLKALIKLYEKDEDKDK---LELFTSRFK 371 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhccee-ecCccHHHHHHHHHHHHHHhccccchH---HHHHHHHHH
Confidence 578999999999999999999888878888888888 765 669999999999999887754 221 111121
Q ss_pred --HHHHhhcCCcHHHHHHHHHHHHhh--cccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 584 --IVQQLVEDSATVVREAAARNLALL--LPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 584 --~LqqL~eD~e~~VR~aAAksL~~l--~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
|++-...|-+.-||.....-+-.. ...+++. .+ ..+..|+.|....|+.+|...+
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~----di-~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDK----DI-LIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhcccccChh----HH-HHHHHHHhccCcchHHHHHHHH
Confidence 233336888999997765544443 5566665 33 4456789999999998886654
No 305
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.12 E-value=3.2e+02 Score=28.91 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.2
Q ss_pred HHHHHHcC
Q 001018 159 KEYLLLAG 166 (1188)
Q Consensus 159 ~eYLl~~~ 166 (1188)
-+||..+|
T Consensus 7 l~y~~~qN 14 (169)
T PF07106_consen 7 LEYMKEQN 14 (169)
T ss_pred HHHHHHcC
Confidence 34444433
No 306
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=2.1e+02 Score=39.97 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=56.8
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhchhhh--hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 910 VVSSNIDMKINAANLLKVIVPYINAKVT--SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 910 v~D~~pnVR~naak~L~~L~~~ig~~~l--s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.-|..+++|+-++..++.+...+|..|+ -.+++|.|.+|.+|-+-.|...+.+-+..+-+.+|.
T Consensus 1550 trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1550 TRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 3477899999999999999999999876 478999999999999999999999988777777776
No 307
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.08 E-value=2.6e+02 Score=25.19 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=13.5
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHhh
Q 001018 260 LHRDLKDKENLILDLKKTTEHQRRELN 286 (1188)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (1188)
+.+.|++-+.+++++.+.++..++++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444443
No 308
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.02 E-value=8.3e+02 Score=25.75 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhh
Q 001018 496 DTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEME 541 (1188)
Q Consensus 496 ~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~E 541 (1188)
....-.++..-..+|+++.++..|...+.=+..+.+.-|.+.....
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~ 64 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH 64 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4557788888899999999999999888877777776666555433
No 309
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.69 E-value=2.5e+02 Score=36.57 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHHHh
Q 001018 280 HQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLR 339 (1188)
Q Consensus 280 ~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (1188)
..+.|+++.-.+..+++-++|...-+|.++...... ....++++.+-++.|++.|..+-
T Consensus 498 rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ-rDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 498 RIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQ-RDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666777766666655444444222000 11133445555666666666553
No 310
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.69 E-value=9.4e+02 Score=27.08 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=5.3
Q ss_pred Hhhhhhhhhhhhh
Q 001018 228 VNERLNHEKESLL 240 (1188)
Q Consensus 228 ~~~~l~~~~~~~~ 240 (1188)
..+.+..|+..+.
T Consensus 43 ~id~~~~e~~~L~ 55 (251)
T PF11932_consen 43 RIDQWDDEKQELL 55 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 311
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.53 E-value=2.4e+02 Score=35.43 Aligned_cols=114 Identities=24% Similarity=0.268 Sum_probs=60.0
Q ss_pred hHHHH-HHHHHHcCCcccc---eeccccccCCCCCCCCCC-----CCCCChHHHHHHHHhhccchHHHHHHHHHHhhhhh
Q 001018 154 LNCAV-KEYLLLAGYRLTA---MTFYEEVTDQNLDIWQNT-----PARVPDALRHYYYQYLSSTTEAAEEKIAMLRENES 224 (1188)
Q Consensus 154 LN~lv-~eYLl~~~Yklts---itf~dE~~dqd~e~W~dv-----~~~~P~~L~~~yr~~~~~~~~~~~~~~~~~~~~~~ 224 (1188)
+-|++ -=|.+.-+..+.| +|--++...||.+.-++. |.++-.+++.+-|= .++++. .++|-|
T Consensus 29 ~~w~~~~l~iil~~vs~~a~~~lt~~qdA~~~~~~~~~p~~~s~~~~s~~r~~~e~~RI-~~sVs~-------EL~ele- 99 (907)
T KOG2264|consen 29 FIWFVFILYIILYNVSFSAPSWLTTLQDALKQNIENLDPYDASCSGYSIGRILREQKRI-LASVSL-------ELTELE- 99 (907)
T ss_pred HHHHHHHHHHHHhhcccccceeeecccccchhcccccCcccccccchhHHHHHHHHHHH-HHHHHH-------HHHHHH-
Confidence 34444 5566666655554 444567777777666665 34444555555552 122221 223322
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEI 292 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~ 292 (1188)
-.+.+|+.| ++.+....|++++.|+.++.....+|.++++-++.+.++++..
T Consensus 100 --~krqel~se--------------I~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 100 --VKRQELNSE--------------IEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred --HHHHHHHhH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 222333333 3333445556666666666666777777776666665555544
No 312
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.52 E-value=3e+02 Score=33.09 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=21.1
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHH
Q 001018 252 ALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAE 291 (1188)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e 291 (1188)
+|.|.-+.+.++|++++.+.++++-.+......|+.|..-
T Consensus 353 aLrkerd~L~keLeekkreleql~~q~~v~~saLdtCika 392 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKA 392 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3444444455555555555555555555555555555433
No 313
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.38 E-value=8.1e+02 Score=34.02 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=22.7
Q ss_pred hhhhhhhhhHHHHhhhhHHHHHHHHHHhhhc
Q 001018 79 ALVEKLAITEYELRLAQEDVTKLKAELKKKS 109 (1188)
Q Consensus 79 ~~~ekvavle~ELR~a~e~I~~Lr~~l~~~~ 109 (1188)
...++++-++.+++.+...++.++..+++..
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLE 701 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888777777777776553
No 314
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=1e+03 Score=28.38 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=61.5
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh-------hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHH
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK-------VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~-------~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~ 969 (1188)
+...++|.|...+.++...|+.-+.+....|.+-.|.. ++...|+|.|+.-.-..|-.|--++++.|..++-
T Consensus 79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999998888777643 4467888999998888999999999999998884
No 315
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=8.9e+02 Score=28.73 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=49.4
Q ss_pred hhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH---hcCCChhHHHHHHHHHHHhcccCCHHHHH
Q 001018 940 QVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAF---LEDGSHEATVAVVRALAVAVPHTTERLRD 1016 (1188)
Q Consensus 940 ~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~sl---L~D~~~~vR~~vv~al~~l~p~~~~~~r~ 1016 (1188)
.++.+++.=...+.--|=-+++-+++.+.+.++..... .+-..+..+ ..+.+.=||-.+-++|..++-++.|.-+-
T Consensus 129 ~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L 207 (334)
T KOG2933|consen 129 EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLL 207 (334)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHH
Confidence 44555555556666666677777777777776654332 233333333 23445667777778888877777776555
Q ss_pred -HHHHH
Q 001018 1017 -YLLSK 1021 (1188)
Q Consensus 1017 -~IlP~ 1021 (1188)
.++|.
T Consensus 208 ~~L~~~ 213 (334)
T KOG2933|consen 208 RKLIPI 213 (334)
T ss_pred HHHHHH
Confidence 56665
No 316
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.03 E-value=2.4e+02 Score=35.48 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHhhhhhHHHHhhhhhhh-------hhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHH
Q 001018 218 MLRENESLLKVNERLNHE-------KESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTA 290 (1188)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (1188)
|.||=|+|.++|..|-.- |..|...-|-...+.+.|...+++.+.--..+|+++.+++++|...+.+.-+.|.
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444 4444444455666677777777776554445566666666665555555544433
No 317
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.90 E-value=4.1e+02 Score=32.81 Aligned_cols=14 Identities=57% Similarity=0.800 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001018 325 EEEIKSLLKEIERL 338 (1188)
Q Consensus 325 ~~~~~~l~~~~~~~ 338 (1188)
+++|+.|+...+.+
T Consensus 343 Eeei~~L~~~~d~L 356 (622)
T COG5185 343 EEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHhhHHHH
Confidence 34444444444443
No 318
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.47 E-value=4e+02 Score=24.74 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=11.6
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHH
Q 001018 259 ALHRDLKDKENLILDLKKTTEHQRRE 284 (1188)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1188)
.+...+++.+.++..++..++....+
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544443333333
No 319
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.43 E-value=3e+02 Score=29.17 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=48.8
Q ss_pred hHHHhhccCCC-cchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHH
Q 001018 943 PALVTLGSDQN-LNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLS 1020 (1188)
Q Consensus 943 PaLv~LasD~d-~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP 1020 (1188)
+.+...+.+++ |..|++++-.++.... +...+.+...|...+.|..+-|+.++..+|..++-..+..+++++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 55666555555 4444444433333322 33457788889999999999999999999999987754444444433
No 320
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.10 E-value=5.3e+02 Score=33.89 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=11.6
Q ss_pred HHhhHHHHHHHhhhhHHHHhhhhhhh
Q 001018 274 LKKTTEHQRRELNDCTAEITALKMHI 299 (1188)
Q Consensus 274 ~~~~~~~~~~~l~~~~~e~~~l~~~i 299 (1188)
++++++..+.++.++++-+..+|+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 321
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.75 E-value=2.8e+02 Score=33.05 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=7.9
Q ss_pred HHHhhhhHHHHHHHHHH
Q 001018 89 YELRLAQEDVTKLKAEL 105 (1188)
Q Consensus 89 ~ELR~a~e~I~~Lr~~l 105 (1188)
-++..++..+.+|++++
T Consensus 81 ~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 81 ADAAELESQVLRLEAEV 97 (423)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 322
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=22.55 E-value=1e+03 Score=26.03 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHH-HHHHH-hhhChhhh
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQS-CGELA-EFVRPEIR 577 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAes-cg~La-~~vg~e~r 577 (1188)
.+.+..+.-.|...+--+.|..++.-+...-+.+.++. ++.+...+.+..+ .-+++. |..+. +++ .+
T Consensus 44 ~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~---Wd~vD~~~~~i~g~~~---~~ 112 (208)
T cd07064 44 KEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSW---WDTVDSLAKVVGGILL---AD 112 (208)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCch---HHHHHHHHHHHhHHHH---hC
Confidence 56777777788888888999999887777655554443 3333333333221 123332 22221 222 12
Q ss_pred hhhhHHHHHHhhc-CCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHh
Q 001018 578 DSLILSIVQQLVE-DSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVIN 649 (1188)
Q Consensus 578 ~slLL~~LqqL~e-D~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~ 649 (1188)
...+.+.+...+. +.-|..|.+++..+. +....+ ...+..+...++.|++.-|+.+. +-.+--+++
T Consensus 113 ~~~~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~~~----~~~l~~~~~~~~~d~e~fI~KAi-GW~LRe~~k 179 (208)
T cd07064 113 YPEFEPVMDEWSTDENFWLRRTAILHQLK-YKEKTD----TDLLFEIILANLGSKEFFIRKAI-GWALREYSK 179 (208)
T ss_pred ChhHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHccC----HHHHHHHHHHhCCChHHHHHHHH-HHHHHHHhc
Confidence 2223566777555 557777777775444 333222 34677788889999999988764 344355554
No 323
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.52 E-value=5e+02 Score=24.59 Aligned_cols=17 Identities=47% Similarity=0.765 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001018 322 ERYEEEIKSLLKEIERL 338 (1188)
Q Consensus 322 ~~~~~~~~~l~~~~~~~ 338 (1188)
..|+++|..|..+++.-
T Consensus 60 ~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 60 QQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46899999998887754
No 324
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.48 E-value=2.7e+02 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 266 DKENLILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
+.+..+.++++.+..++.+...+++|...|
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555
No 325
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.47 E-value=7.5e+02 Score=33.60 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=11.6
Q ss_pred CCChHHHHHHHHHHhhcc
Q 001018 1079 SLDPAHKEALEIIMKDRS 1096 (1188)
Q Consensus 1079 ~l~~~~k~~l~~i~ke~~ 1096 (1188)
.+|+..+..+..+|++..
T Consensus 1123 ~ld~~~~~~~~~~~~~~~ 1140 (1179)
T TIGR02168 1123 PLDDANVERFANLLKEFS 1140 (1179)
T ss_pred cccHHHHHHHHHHHHHhc
Confidence 566666666666666654
No 326
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.40 E-value=3.6e+02 Score=29.36 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=12.8
Q ss_pred CCCCChhhhhHhHHHHHHHHH
Q 001018 143 LGPLKDIERKDLNCAVKEYLL 163 (1188)
Q Consensus 143 ~~~ikp~E~r~LN~lv~eYLl 163 (1188)
+|.+-|.++-.--=.|||||-
T Consensus 17 LEK~~pK~~gI~~~~VKdvlq 37 (188)
T PF03962_consen 17 LEKLAPKEKGIVSMSVKDVLQ 37 (188)
T ss_pred HHHHcccccCCchhhHHHHHH
Confidence 445555555555567888874
No 327
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.38 E-value=2e+02 Score=35.29 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhc
Q 001018 195 DALRHYYYQYLS 206 (1188)
Q Consensus 195 ~~L~~~yr~~~~ 206 (1188)
-.|||+|..|.+
T Consensus 161 avLRQl~~~~~~ 172 (424)
T PF03915_consen 161 AVLRQLYSEFQS 172 (424)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 347888888865
No 328
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.31 E-value=1e+03 Score=25.96 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=22.3
Q ss_pred hHHHHHHHHhhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhh
Q 001018 195 DALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKE 237 (1188)
Q Consensus 195 ~~L~~~yr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (1188)
.-|-+++|+.......+....-........+.++.+.+..+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788877665555544433333333344444444444433
No 329
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.30 E-value=2.6e+02 Score=30.10 Aligned_cols=28 Identities=36% Similarity=0.448 Sum_probs=16.5
Q ss_pred HhhHHHHHHHhhhhHHHHhhhhhhhccc
Q 001018 275 KKTTEHQRRELNDCTAEITALKMHIEGS 302 (1188)
Q Consensus 275 ~~~~~~~~~~l~~~~~e~~~l~~~ie~~ 302 (1188)
+++++..++++.....++..+|.++||.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666667777776654
No 330
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.26 E-value=4.8e+02 Score=32.66 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=44.4
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHHH
Q 001018 259 ALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERL 338 (1188)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (1188)
-+-+++++...++..+.+.|+...++++-..+|+++|..+|= -+.++|+.+.+|.+.+
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~----------------------d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLV----------------------DLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhHHHHHHHHHHHHHH
Confidence 356788888899999999999999999999999998854332 3456677776666644
Q ss_pred h
Q 001018 339 R 339 (1188)
Q Consensus 339 ~ 339 (1188)
+
T Consensus 260 ~ 260 (596)
T KOG4360|consen 260 D 260 (596)
T ss_pred H
Confidence 3
No 331
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.93 E-value=5.3e+02 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=29.0
Q ss_pred ChHHHHHHHHhhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhH
Q 001018 194 PDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSL 257 (1188)
Q Consensus 194 P~~L~~~yr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (1188)
=-+|++.++.-..+.-.....--....+++.+...+++|..+.+.+......+.....++.+.+
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666665443332222222244455555555555555554444433333333333333333
No 332
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.92 E-value=9.4e+02 Score=29.42 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhh
Q 001018 320 PVERYEEEIKSLLKEIERLRAK 341 (1188)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~ 341 (1188)
.-+..+..|..|++|++++++.
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~ 268 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTY 268 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888888753
No 333
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=3.1e+02 Score=36.63 Aligned_cols=115 Identities=8% Similarity=0.121 Sum_probs=83.5
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh-----hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK-----VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~-----~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
...||.-...++.|+.--+|+.+...|.-..+.+... -+-.+.+|.+++-..+.|+.+=.-|++.+..+..+.|.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 3556666677889999999999999888766665331 12357899999989999999988888888888888774
Q ss_pred ---HHHHHHHHHHHHHHhcCC--------------ChhHHHHHHHHHHHhcccCCHH
Q 001018 974 ---DMIVDKIRVQMDAFLEDG--------------SHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 974 ---e~~~ekl~~~~~slL~D~--------------~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
.-|.+.+.|.+..++.|. .|.+...++.++..+++.++-.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~ 937 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELA 937 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecc
Confidence 234466777777776664 2566666667766666666443
No 334
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.65 E-value=5.3e+02 Score=33.36 Aligned_cols=85 Identities=25% Similarity=0.319 Sum_probs=39.9
Q ss_pred hhhhcchhhhhhhhhhHHH-Hhh-hhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccccccccccccCCCcccC
Q 001018 241 KTKEISDGQISALTKSLEA-LHR-DLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQS 318 (1188)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~ 318 (1188)
|.+|.+..++..+.+++.+ +.+ .|++++.++..+..+=|.+.|+.-.--+.|+.|.-+|....
T Consensus 423 kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~e--------------- 487 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAE--------------- 487 (961)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh---------------
Confidence 3344444444444444422 222 45556666665555544444433333344444433333210
Q ss_pred chhhhhHHHHHHHHHHHHHHhh
Q 001018 319 QPVERYEEEIKSLLKEIERLRA 340 (1188)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~ 340 (1188)
-..++.-+.|+.|+.|...+|.
T Consensus 488 tl~~K~ge~i~~L~sE~~~lk~ 509 (961)
T KOG4673|consen 488 TLEEKKGELITKLQSEENKLKS 509 (961)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 1223445577777777766654
No 335
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.61 E-value=9.6e+02 Score=30.84 Aligned_cols=97 Identities=23% Similarity=0.347 Sum_probs=51.0
Q ss_pred hcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhh------------------HHHHHHHhhhhHHHHhhhhhhhcccccc
Q 001018 244 EISDGQISALTKSLEALHRDLKDKENLILDLKKT------------------TEHQRRELNDCTAEITALKMHIEGSHSV 305 (1188)
Q Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~e~~~l~~~ie~~~s~ 305 (1188)
.....|+..+++.+..|++.+++..++..+.+.. ++.-...+-++..|+..|..+...-.++
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3345566777777777766666555555444433 2222222333445555555444432222
Q ss_pred ccccccCCCcccCchhhhhHHHHHHHHHHHHHHhh
Q 001018 306 RNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRA 340 (1188)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (1188)
......+.-.-....++....+|..|.++++++++
T Consensus 272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22222222222334556667788888888887775
No 336
>PRK09039 hypothetical protein; Validated
Probab=21.52 E-value=3.8e+02 Score=31.93 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.3
Q ss_pred HhhccchHHHHH
Q 001018 203 QYLSSTTEAAEE 214 (1188)
Q Consensus 203 ~~~~~~~~~~~~ 214 (1188)
.|++......++
T Consensus 42 ~fLs~~i~~~~~ 53 (343)
T PRK09039 42 FFLSREISGKDS 53 (343)
T ss_pred HHHHHHHhhHHH
Confidence 445544444443
No 337
>PRK15345 type III secretion system protein SsaL; Provisional
Probab=21.38 E-value=1e+03 Score=28.31 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=29.3
Q ss_pred hhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc-----hhhhhHHHHHHHhcc
Q 001018 580 LILSIVQQLVEDSATVVREAAARNLALLLPLFPNT-----DKYFKVEDLMFQLVC 629 (1188)
Q Consensus 580 lLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~-----d~~~qi~~~f~~Ll~ 629 (1188)
-|.+.+..+..-..-+.| ..+.+..+...+|+. +-..+|.+.+..+-.
T Consensus 271 WL~~rl~~l~~~~~~~~r--~lrrl~el~~lmPd~CF~D~eQreqIle~lle~~~ 323 (326)
T PRK15345 271 WLLDRLTAIVSSSKMFNR--LLQQLDAQFMLIPDNCFNDEDQREQILETLREVKI 323 (326)
T ss_pred HHHHHHHhhccchHHHHH--HHHHHHHHHHhCcHHhcCCHHHHHHHHHHHHHHhc
Confidence 344455555553444455 788888888887753 345567777776633
No 338
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=2.5e+03 Score=30.01 Aligned_cols=182 Identities=11% Similarity=0.101 Sum_probs=106.7
Q ss_pred CccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHH----HHhhCHHHHHHHHHHHHHHHhCCccccccCCcccc
Q 001018 746 EWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAV----SKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIH 821 (1188)
Q Consensus 746 ~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~L----a~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~ 821 (1188)
.|+-.+-+.-.++-.+.++. .|.--.||..+++.|-.+ +.+||+......+.-+.+-+|.- . |. +
T Consensus 987 ~~~l~e~lwi~ll~~L~~~~---~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~-~-----~~--q 1055 (1610)
T KOG1848|consen 987 KEILPEVLWIMLLVHLADLC---EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDS-Q-----PI--Q 1055 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHh---ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcc-c-----cc--c
Confidence 35544434445666667764 888888999988876665 56788866666666666666631 1 10 0
Q ss_pred ccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHh
Q 001018 822 SGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTM 901 (1188)
Q Consensus 822 ~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~ 901 (1188)
+ .+.- ...++-.+|..++.+-+ .|+ ...++. +.+ ++.+ +.++-...+.
T Consensus 1056 ~-~~ew-ngkeiqkqwtet~~lti--sgI-----------------aklf~e-------~fk-~lln---ln~f~~vwe~ 1103 (1610)
T KOG1848|consen 1056 N-VSEW-NGKEIQKQWTETSCLTI--SGI-----------------AKLFSE-------NFK-LLLN---LNGFLDVWEE 1103 (1610)
T ss_pred c-hhhh-cchhHhhhhhhhhhhhH--HHH-----------------HHHHHH-------HHH-HHHh---cccHHHHHHH
Confidence 1 0000 12233456655544221 111 111111 222 1111 2234456688
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhh---chhhh------------hhhhhhHHHhhccCCCcchHHHHHHHHHH
Q 001018 902 VFNILWEMVVSSNIDMKINAANLLKVIVPYI---NAKVT------------SMQVLPALVTLGSDQNLNVKYASIDAFGA 966 (1188)
Q Consensus 902 iLpiL~~lv~D~~pnVR~naak~L~~L~~~i---g~~~l------------s~~VlPaLv~LasD~d~dVR~aaieAl~~ 966 (1188)
+|..+..+.-|.+|++.+++++.|+.+.-.+ |.-.+ =..+-|.+-+-..+.-|+|.+-++..++.
T Consensus 1104 ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~ 1183 (1610)
T KOG1848|consen 1104 LLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIE 1183 (1610)
T ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999885432 22111 12233444445578899999999999987
Q ss_pred HHHh
Q 001018 967 VAQH 970 (1188)
Q Consensus 967 LA~~ 970 (1188)
.++.
T Consensus 1184 ~vqs 1187 (1610)
T KOG1848|consen 1184 SVQS 1187 (1610)
T ss_pred HHHH
Confidence 6664
No 339
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.87 E-value=7.4e+02 Score=25.81 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhH----------HHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhh
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTKSL----------EALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITA 294 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~ 294 (1188)
+-..+..++.|+.+|.+.....+.++..+...+ +........+...++.+++.++...+.|.........
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHHHhhh
Q 001018 295 LKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAK 341 (1188)
Q Consensus 295 l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (1188)
..-..+++ ......|..+...|..+
T Consensus 106 ~d~~ae~~----------------------eRkv~~le~~~~~~E~k 130 (143)
T PF12718_consen 106 ADVKAEHF----------------------ERKVKALEQERDQWEEK 130 (143)
T ss_pred HHHHhHHH----------------------HHHHHHHHhhHHHHHHH
No 340
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.72 E-value=2.8e+02 Score=26.89 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHHHhhcCCC--hhHHHHHHHHHHHHHh-hhchhhhhhhhhhHHHhhccCCCc
Q 001018 895 FEEHHTMVFNILWEMVVSSN--IDMKINAANLLKVIVP-YINAKVTSMQVLPALVTLGSDQNL 954 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~--pnVR~naak~L~~L~~-~ig~~~ls~~VlPaLv~LasD~d~ 954 (1188)
.+.....++.+|-+.+.|.. -|||-++......|.. .-...+-....+-.|.+.++|||.
T Consensus 11 ~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNm 73 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNM 73 (93)
T ss_pred hHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCC
No 341
>PRK01156 chromosome segregation protein; Provisional
Probab=20.68 E-value=8e+02 Score=32.83 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 001018 321 VERYEEEIKSLLKEIERLR 339 (1188)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~ 339 (1188)
+..|..+|+.+..++..++
T Consensus 471 i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIE 489 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555666665555554
No 342
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.49 E-value=2.7e+02 Score=34.48 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=24.6
Q ss_pred HHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhh
Q 001018 218 MLRENESLLKVNERLNHEKESLLKTKEISDGQISA 252 (1188)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 252 (1188)
+..+-..+.++|++|.+|++.|.+-....+.++..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44567778888888888888887655555555544
No 343
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=20.22 E-value=1.1e+03 Score=30.81 Aligned_cols=204 Identities=10% Similarity=0.112 Sum_probs=119.9
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhh----hhhhhhhHHHhh-ccCCCcchHHHHHHHHHHHHHhh
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKV----TSMQVLPALVTL-GSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~----ls~~VlPaLv~L-asD~d~dVR~aaieAl~~LA~~l 971 (1188)
+.++|-+..++.|++|.+|.=|.+.++.+... +..+. +...+..++..+ ....+.+.=..--..+..+...+
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 77899999999999999999999999998664 44332 344566666666 22223322222445677777778
Q ss_pred chHHHHHHHHH--------HHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH---HHHHH--HHHhhcCCCCChhhHHH
Q 001018 972 KNDMIVDKIRV--------QMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD---YLLSK--IFQLSAVPSSSSDVMRR 1038 (1188)
Q Consensus 972 ~~e~~~ekl~~--------~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~--L~~L~~vpN~~~~~~~R 1038 (1188)
..+.|...+.. .+...|.+..-..--.++++|..+....+.+|-+ .+-|+ +..+-..|.+
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f------- 271 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAF------- 271 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHH-------
Confidence 77766544433 3444455542344455667777776666665544 23332 1222222333
Q ss_pred HHHHHHHHHHHHhhccccCc-hhhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHhhccCCchhhhhhhhhhhccccc
Q 001018 1039 RERANAFCESIRALDATELS-ATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITS 1115 (1188)
Q Consensus 1039 ~~vAk~l~~a~~aL~~~~l~-~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~ke~~~~~~~~~~~~~~~~~~~~~ 1115 (1188)
.+.|..+...=...... -..+-+=+.|.++-|.... -.+.++..+..+.+..-..++...++....+.|+..
T Consensus 272 ---~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~--~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~~~~~~ 344 (727)
T PF12726_consen 272 ---KKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQ--RSQACRKLLHFLLERLQHDRFPDEARAACLRAGLDA 344 (727)
T ss_pred ---HHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 22222222211000000 1234466788888877533 577888888888877776666666888877777654
No 344
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.17 E-value=2.4e+02 Score=30.62 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=29.2
Q ss_pred hhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 247 DGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 247 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
...+..++.....+...+++++..+.+....++.++-|+..++-+...+
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566656666666666666666666666666666666666554
No 345
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.13 E-value=9.8e+02 Score=24.78 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=39.6
Q ss_pred hhHHHHHHhhc-CCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccC
Q 001018 580 LILSIVQQLVE-DSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCD 630 (1188)
Q Consensus 580 lLL~~LqqL~e-D~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D 630 (1188)
-++.-|..++. ...+.||..+..-+...+..|.+...|..+.+.|..|...
T Consensus 84 ~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~ 135 (142)
T cd03569 84 EFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQILKAE 135 (142)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHc
Confidence 35666666665 5778999999999999999998877777888888776543
No 346
>PRK02224 chromosome segregation protein; Provisional
Probab=20.03 E-value=7.6e+02 Score=32.89 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=24.6
Q ss_pred hhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 248 GQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 248 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
.++..+.+.+..++.++.+..+.....+..++..+.++.++++++..+...++
T Consensus 349 ~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444455555555555555555544443
Done!