Query 001018
Match_columns 1188
No_of_seqs 243 out of 430
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 2.4E-33 8.2E-38 334.6 36.8 506 503-1078 11-532 (588)
2 1b3u_A Protein (protein phosph 100.0 3.1E-30 1.1E-34 307.8 45.7 411 492-1030 154-571 (588)
3 1u6g_C TIP120 protein, CAND1; 99.9 8.7E-19 3E-23 229.6 41.7 530 496-1078 42-663 (1230)
4 2bpt_A Importin beta-1 subunit 99.8 8.3E-16 2.8E-20 192.0 51.8 550 495-1088 88-702 (861)
5 4fdd_A Transportin-1; heat rep 99.8 5.8E-17 2E-21 204.7 41.3 548 479-1078 106-724 (852)
6 2bpt_A Importin beta-1 subunit 99.8 5.4E-16 1.9E-20 193.7 44.7 521 499-1075 131-733 (861)
7 1qgr_A Protein (importin beta 99.8 1.8E-15 6E-20 189.5 47.8 555 494-1077 82-746 (876)
8 4fdd_A Transportin-1; heat rep 99.8 5.1E-16 1.7E-20 196.1 42.9 512 495-1094 83-655 (852)
9 1u6g_C TIP120 protein, CAND1; 99.7 4.1E-15 1.4E-19 194.9 38.8 509 506-1074 10-576 (1230)
10 1qgr_A Protein (importin beta 99.7 2.4E-14 8E-19 179.3 41.6 520 498-1053 124-777 (876)
11 1ibr_B P95, importin beta-1 su 99.6 1.2E-13 4E-18 159.7 29.8 350 493-1023 81-457 (462)
12 2jdq_A Importin alpha-1 subuni 99.4 1.8E-10 6.1E-15 133.0 34.8 348 502-1008 64-443 (450)
13 1wa5_B Importin alpha subunit; 99.4 2.4E-11 8.3E-16 145.2 28.5 388 504-1012 89-514 (530)
14 1ibr_B P95, importin beta-1 su 99.4 1.9E-10 6.4E-15 132.8 32.1 378 503-1053 3-440 (462)
15 2jdq_A Importin alpha-1 subuni 99.4 1.1E-10 3.8E-15 134.7 29.8 347 504-1009 22-391 (450)
16 2vgl_B AP-2 complex subunit be 99.2 3.2E-09 1.1E-13 129.5 32.9 454 479-1096 30-493 (591)
17 4b8j_A Importin subunit alpha- 99.2 2.6E-09 8.9E-14 127.3 29.4 367 504-1031 76-481 (528)
18 1wa5_B Importin alpha subunit; 99.2 2.5E-09 8.5E-14 127.8 28.6 348 540-1050 86-457 (530)
19 1oyz_A Hypothetical protein YI 99.2 1.9E-09 6.4E-14 117.9 23.9 124 504-640 25-149 (280)
20 1jdh_A Beta-catenin; beta-cate 99.2 4.7E-09 1.6E-13 123.9 29.0 446 501-1031 16-515 (529)
21 2z6g_A B-catenin; FULL-length, 99.2 1.1E-08 3.6E-13 129.1 32.5 472 501-1016 149-671 (780)
22 2z6g_A B-catenin; FULL-length, 99.1 5.3E-08 1.8E-12 122.7 35.6 404 504-1077 117-542 (780)
23 2vgl_B AP-2 complex subunit be 99.1 2.1E-08 7.2E-13 122.3 30.1 405 502-1012 86-497 (591)
24 2z6h_A Catenin beta-1, beta-ca 99.1 7.5E-08 2.6E-12 118.2 33.8 470 502-1016 14-535 (644)
25 1jdh_A Beta-catenin; beta-cate 99.1 4.9E-08 1.7E-12 115.2 29.5 380 532-1077 8-409 (529)
26 4b8j_A Importin subunit alpha- 99.0 1.7E-07 6E-12 111.5 32.3 352 500-1009 115-497 (528)
27 1w63_A Adapter-related protein 99.0 2.3E-07 7.8E-12 114.0 33.8 112 896-1013 308-419 (618)
28 2z6h_A Catenin beta-1, beta-ca 99.0 2.6E-07 8.8E-12 113.5 32.6 398 503-972 99-530 (644)
29 1lrv_A LRV, leucine-rich repea 99.0 1.6E-10 5.6E-15 126.4 3.0 91 507-642 55-145 (244)
30 2qk2_A LP04448P; mini spindles 99.0 1E-08 3.4E-13 110.4 16.7 190 755-1015 14-212 (242)
31 2qk2_A LP04448P; mini spindles 98.9 9.8E-08 3.4E-12 102.6 21.4 135 505-643 18-157 (242)
32 3now_A UNC-45 protein, SD10334 98.9 1.2E-05 4.2E-10 101.3 42.8 460 510-1082 255-767 (810)
33 1oyz_A Hypothetical protein YI 98.8 5.8E-08 2E-12 106.0 17.8 239 757-1078 24-265 (280)
34 1wa5_C Importin alpha RE-expor 98.8 7.8E-05 2.7E-09 95.8 47.8 181 909-1095 463-672 (960)
35 2x1g_F Cadmus; transport prote 98.8 5.7E-05 1.9E-09 96.8 44.4 547 499-1124 83-765 (971)
36 1w63_A Adapter-related protein 98.7 2.8E-06 9.6E-11 104.3 28.6 442 494-1008 99-577 (618)
37 1wa5_C Importin alpha RE-expor 98.7 5.3E-05 1.8E-09 97.4 40.0 118 912-1030 372-509 (960)
38 3now_A UNC-45 protein, SD10334 98.6 7.3E-05 2.5E-09 94.3 39.1 385 505-1029 333-762 (810)
39 2vgl_A Adaptor protein complex 98.6 5.2E-05 1.8E-09 93.3 36.2 124 894-1022 322-450 (621)
40 2x19_B Importin-13; nuclear tr 98.6 0.00089 3E-08 85.5 48.8 111 898-1011 487-602 (963)
41 3ltm_A Alpha-REP4; protein eng 98.6 1.1E-06 3.8E-11 91.7 18.2 117 503-643 20-136 (211)
42 3ltm_A Alpha-REP4; protein eng 98.6 9.2E-07 3.2E-11 92.3 17.2 90 902-1007 82-171 (211)
43 3ltj_A Alpharep-4; protein eng 98.6 2.4E-06 8.3E-11 88.5 19.2 121 499-643 11-131 (201)
44 3l9t_A Putative uncharacterize 98.5 4.7E-07 1.6E-11 97.8 11.6 133 500-643 69-202 (240)
45 1lrv_A LRV, leucine-rich repea 98.5 4.5E-08 1.5E-12 107.1 3.3 107 484-642 63-169 (244)
46 3m1i_C Exportin-1; heat repeat 98.5 0.00049 1.7E-08 89.3 41.0 150 496-649 85-264 (1049)
47 3l9t_A Putative uncharacterize 98.4 3.3E-06 1.1E-10 91.3 14.9 94 539-643 69-163 (240)
48 3tpo_A Importin subunit alpha- 98.3 0.00016 5.4E-09 86.8 30.0 348 499-1007 116-496 (529)
49 3ltj_A Alpharep-4; protein eng 98.3 2.9E-06 1E-10 87.8 13.0 116 504-643 78-193 (201)
50 3ul1_B Importin subunit alpha- 98.3 0.00054 1.9E-08 81.9 33.5 349 499-1008 97-478 (510)
51 3ul1_B Importin subunit alpha- 98.3 8.8E-05 3E-09 88.7 25.4 131 901-1031 316-463 (510)
52 2qk1_A Protein STU2; STU2P, XM 98.3 2.6E-05 8.8E-10 85.2 19.0 151 501-652 59-223 (249)
53 4hat_C Exportin-1; heat repeat 98.3 0.024 8.4E-07 73.6 49.3 465 500-1014 93-624 (1023)
54 2x1g_F Cadmus; transport prote 98.2 0.0053 1.8E-07 78.7 42.5 112 556-669 436-555 (971)
55 2vgl_A Adaptor protein complex 98.2 0.0028 9.7E-08 77.9 38.1 121 514-643 50-172 (621)
56 3tpo_A Importin subunit alpha- 98.2 0.00011 3.7E-09 88.2 24.4 108 900-1007 334-448 (529)
57 4hxt_A De novo protein OR329; 98.2 7.6E-05 2.6E-09 78.7 20.2 209 758-1030 4-225 (252)
58 1te4_A Conserved protein MTH18 98.1 8.1E-07 2.8E-11 86.8 2.4 116 503-643 13-128 (131)
59 2qk1_A Protein STU2; STU2P, XM 98.0 0.00016 5.5E-09 78.9 19.4 137 507-643 21-170 (249)
60 4ady_A RPN2, 26S proteasome re 98.0 0.00086 2.9E-08 85.3 28.2 101 902-1006 613-717 (963)
61 4hxt_A De novo protein OR329; 98.0 0.00015 5.1E-09 76.4 17.1 171 900-1078 43-225 (252)
62 2x19_B Importin-13; nuclear tr 98.0 0.041 1.4E-06 70.2 42.8 133 896-1031 440-582 (963)
63 4db6_A Armadillo repeat protei 97.9 0.00019 6.4E-09 74.3 16.9 190 755-1008 11-209 (210)
64 4db8_A Armadillo-repeat protei 97.9 0.00029 1E-08 74.8 18.6 131 901-1031 96-236 (252)
65 4db6_A Armadillo repeat protei 97.9 0.00016 5.4E-09 74.9 15.5 172 900-1077 11-192 (210)
66 3m1i_C Exportin-1; heat repeat 97.9 0.017 5.9E-07 74.9 37.9 368 507-973 199-622 (1049)
67 4db8_A Armadillo-repeat protei 97.9 0.00017 5.8E-09 76.7 15.5 170 900-1077 53-234 (252)
68 1te4_A Conserved protein MTH18 97.8 2.2E-05 7.5E-10 76.6 6.6 88 903-1006 44-131 (131)
69 4hat_C Exportin-1; heat repeat 97.8 0.22 7.7E-06 64.7 44.3 214 895-1109 534-801 (1023)
70 3ibv_A Exportin-T; karyopherin 97.7 0.11 3.9E-06 67.1 39.4 436 499-1027 82-585 (980)
71 3opb_A SWI5-dependent HO expre 97.6 0.25 8.5E-06 61.9 40.0 108 901-1008 606-728 (778)
72 3gjx_A Exportin-1; transport, 97.5 0.44 1.5E-05 62.1 41.3 139 876-1014 490-650 (1073)
73 4ady_A RPN2, 26S proteasome re 97.4 0.014 4.8E-07 74.4 24.8 136 502-649 429-572 (963)
74 1xm9_A Plakophilin 1; armadill 97.3 0.11 3.7E-06 61.2 30.1 122 505-628 5-136 (457)
75 3nmz_A APC variant protein; pr 97.3 0.11 3.6E-06 61.8 29.8 70 901-970 379-451 (458)
76 3ibv_A Exportin-T; karyopherin 97.2 0.27 9.3E-06 63.6 35.1 279 518-807 414-747 (980)
77 3tjz_B Coatomer subunit gamma; 97.2 0.015 5.3E-07 66.8 20.8 105 897-1005 246-350 (355)
78 3l6x_A Catenin delta-1; cateni 97.2 0.23 7.8E-06 60.7 31.7 131 900-1030 307-458 (584)
79 3l6x_A Catenin delta-1; cateni 97.2 0.21 7.3E-06 60.9 31.3 378 499-969 45-476 (584)
80 1xqr_A HSPBP1 protein; armadil 97.0 0.0053 1.8E-07 68.8 14.3 130 902-1031 82-223 (296)
81 3u0r_A Apoptosis inhibitor 5; 97.0 0.044 1.5E-06 64.7 21.4 128 497-633 60-191 (507)
82 1xqr_A HSPBP1 protein; armadil 96.8 0.021 7.1E-07 63.9 17.0 156 916-1077 55-221 (296)
83 4ffb_C Protein STU2; tubulin f 96.8 0.023 7.9E-07 62.2 16.2 114 898-1014 99-218 (278)
84 2iw3_A Elongation factor 3A; a 96.7 0.034 1.1E-06 71.6 19.1 135 502-639 95-232 (986)
85 2iw3_A Elongation factor 3A; a 96.7 0.036 1.2E-06 71.3 19.3 130 895-1026 89-222 (986)
86 2of3_A ZYG-9; multifunctional 96.6 0.083 2.9E-06 58.4 19.3 116 896-1017 127-245 (266)
87 3opb_A SWI5-dependent HO expre 96.6 2.6 9E-05 52.9 37.2 107 901-1007 545-682 (778)
88 3nmz_A APC variant protein; pr 96.2 0.39 1.3E-05 56.9 23.2 169 900-1076 242-432 (458)
89 2of3_A ZYG-9; multifunctional 96.1 0.07 2.4E-06 59.0 14.9 168 900-1093 86-262 (266)
90 4ffb_C Protein STU2; tubulin f 96.1 0.069 2.4E-06 58.4 14.9 176 901-1097 55-246 (278)
91 3a6p_A Exportin-5; exportin-5, 96.0 6.8 0.00023 51.8 39.0 147 496-647 83-275 (1204)
92 3b2a_A TON_1937, putative unch 95.9 0.34 1.2E-05 52.5 18.3 197 900-1113 32-239 (265)
93 1xm9_A Plakophilin 1; armadill 95.6 0.12 4.2E-06 60.7 15.3 172 903-1076 4-196 (457)
94 3b2a_A TON_1937, putative unch 95.5 0.38 1.3E-05 52.2 16.9 144 503-651 34-181 (265)
95 3nmw_A APC variant protein; AR 95.1 0.53 1.8E-05 53.8 18.0 117 900-1016 213-342 (354)
96 3a6p_A Exportin-5; exportin-5, 95.1 8.1 0.00028 51.1 31.3 115 912-1026 543-681 (1204)
97 3nmw_A APC variant protein; AR 94.9 0.14 4.9E-06 58.6 12.5 170 900-1077 126-317 (354)
98 2db0_A 253AA long hypothetical 94.7 0.83 2.8E-05 47.9 16.0 205 756-1007 32-245 (253)
99 3tjz_B Coatomer subunit gamma; 94.0 0.86 2.9E-05 52.3 16.1 135 500-643 63-200 (355)
100 3oc3_A Helicase MOT1, MOT1; re 93.9 0.23 7.8E-06 59.6 11.2 87 914-1007 241-327 (800)
101 3oc3_A Helicase MOT1, MOT1; re 93.8 0.64 2.2E-05 55.9 14.7 154 503-665 175-343 (800)
102 3tt9_A Plakophilin-2; cell adh 93.8 0.56 1.9E-05 50.7 13.4 172 901-1076 8-205 (233)
103 2db0_A 253AA long hypothetical 92.5 6.2 0.00021 41.5 17.9 173 457-640 52-238 (253)
104 4gmo_A Putative uncharacterize 91.2 1.7 5.8E-05 53.9 14.7 88 899-989 33-129 (684)
105 4gmo_A Putative uncharacterize 91.1 1.2 4.3E-05 55.1 13.4 88 937-1025 32-127 (684)
106 3gs3_A Symplekin, LD45768P; he 91.0 0.9 3.1E-05 49.9 10.6 109 898-1010 13-121 (257)
107 3o2t_A Symplekin; heat repeat, 88.9 2.1 7.2E-05 49.6 11.9 109 898-1010 23-131 (386)
108 3u0r_A Apoptosis inhibitor 5; 88.0 50 0.0017 39.3 25.8 108 549-666 37-144 (507)
109 3gjx_A Exportin-1; transport, 86.8 90 0.0031 40.8 41.9 132 512-643 448-590 (1073)
110 2xtc_A F-box-like/WD repeat-co 85.7 0.22 7.6E-06 46.1 1.0 45 153-200 7-52 (90)
111 3o2t_A Symplekin; heat repeat, 84.8 64 0.0022 37.3 22.0 112 894-1007 56-182 (386)
112 1lsh_A Lipovitellin (LV-1N, LV 81.1 6.2 0.00021 51.5 12.2 129 502-643 391-538 (1056)
113 1vsy_5 Proteasome activator BL 77.0 7 0.00024 50.6 10.6 72 479-550 817-892 (997)
114 3tt9_A Plakophilin-2; cell adh 76.3 14 0.00046 39.8 11.1 106 504-609 10-124 (233)
115 3gs3_A Symplekin, LD45768P; he 72.4 1.1E+02 0.0036 33.5 17.0 105 498-606 12-116 (257)
116 1vsy_5 Proteasome activator BL 71.4 6.8 0.00023 50.8 8.4 120 900-1022 759-888 (997)
117 3ol1_A Vimentin; structural ge 70.9 38 0.0013 32.7 11.6 48 246-296 67-114 (119)
118 3hnw_A Uncharacterized protein 67.1 13 0.00045 36.9 7.7 49 252-300 86-134 (138)
119 1x5b_A Signal transducing adap 66.9 31 0.0011 35.0 10.6 106 861-971 17-127 (163)
120 1juq_A ADP-ribosylation factor 66.0 45 0.0016 34.1 11.7 109 860-973 14-132 (171)
121 4gkw_A Spindle assembly abnorm 65.4 67 0.0023 31.4 11.7 50 238-287 81-130 (167)
122 3g2s_A C-terminal fragment of 64.9 72 0.0025 31.9 12.7 109 860-973 12-130 (149)
123 1mhq_A ADP-ribosylation factor 60.7 93 0.0032 31.0 12.6 106 863-973 5-120 (148)
124 1lsh_A Lipovitellin (LV-1N, LV 60.2 71 0.0024 41.6 14.7 138 498-651 436-578 (1056)
125 1go4_E MAD1 (mitotic arrest de 60.2 18 0.00062 34.1 6.6 74 269-342 12-91 (100)
126 3ol1_A Vimentin; structural ge 59.8 23 0.00078 34.3 7.7 12 194-205 11-22 (119)
127 3oja_B Anopheles plasmodium-re 58.7 20 0.0007 43.0 8.9 36 266-301 548-583 (597)
128 2w83_C C-JUN-amino-terminal ki 58.4 21 0.00072 31.9 6.3 44 218-261 7-50 (77)
129 3nmd_A CGMP dependent protein 58.0 17 0.00057 32.4 5.6 45 259-303 23-67 (72)
130 4atg_A TAF6; transcription, TF 56.7 1.9E+02 0.0066 30.2 16.5 155 859-1027 8-178 (196)
131 3htk_A Structural maintenance 56.7 28 0.00095 29.2 6.8 47 255-301 12-58 (60)
132 3tnu_A Keratin, type I cytoske 54.4 31 0.0011 33.7 7.7 78 225-302 43-124 (131)
133 1c1g_A Tropomyosin; contractIl 54.1 76 0.0026 32.8 11.4 69 227-295 6-74 (284)
134 3grl_A General vesicular trans 51.1 1.2E+02 0.004 37.5 13.6 67 582-649 124-195 (651)
135 3tnu_B Keratin, type II cytosk 51.0 46 0.0016 32.4 8.3 78 225-302 41-122 (129)
136 3u59_A Tropomyosin beta chain; 50.0 1.2E+02 0.0042 28.2 10.7 84 212-295 7-91 (101)
137 1zxa_A CGMP-dependent protein 49.9 13 0.00043 32.7 3.5 35 78-112 21-55 (67)
138 3ghg_A Fibrinogen alpha chain; 49.9 44 0.0015 39.8 9.1 19 325-343 175-193 (562)
139 3u1c_A Tropomyosin alpha-1 cha 49.5 1.3E+02 0.0045 28.1 10.8 85 211-295 6-91 (101)
140 3ldz_A STAM-1, signal transduc 49.3 75 0.0026 31.3 9.7 105 863-972 9-117 (140)
141 3a7o_A Autophagy protein 16; c 48.9 32 0.0011 30.2 5.8 48 252-301 15-62 (75)
142 4atg_A TAF6; transcription, TF 48.5 1.4E+02 0.0049 31.3 12.0 95 540-634 39-146 (196)
143 1elk_A Target of MYB1; superhe 47.1 93 0.0032 31.2 10.1 107 861-972 18-133 (157)
144 2w83_C C-JUN-amino-terminal ki 45.5 29 0.00099 31.1 5.1 61 217-277 13-73 (77)
145 3zyq_A Hepatocyte growth facto 44.3 83 0.0028 33.5 9.8 84 860-948 9-96 (226)
146 3grl_A General vesicular trans 43.7 3.4E+02 0.012 33.5 15.9 93 541-633 122-222 (651)
147 2b6c_A Hypothetical protein EF 43.6 34 0.0012 36.1 6.6 129 505-650 58-189 (220)
148 3a7p_A Autophagy protein 16; c 43.6 91 0.0031 31.4 9.0 44 254-297 67-110 (152)
149 3vkg_A Dynein heavy chain, cyt 42.8 94 0.0032 45.2 12.3 75 251-340 2017-2091(3245)
150 2dfs_A Myosin-5A; myosin-V, in 42.3 53 0.0018 43.0 9.2 35 266-300 981-1015(1080)
151 1deq_A Fibrinogen (alpha chain 40.6 1.3E+02 0.0043 34.6 10.7 24 278-301 136-159 (390)
152 3hnw_A Uncharacterized protein 40.5 62 0.0021 32.1 7.4 40 258-297 78-117 (138)
153 1gk4_A Vimentin; intermediate 40.3 1.1E+02 0.0037 27.7 8.4 46 257-302 28-73 (84)
154 2jtt_C Calcyclin-binding prote 38.9 21 0.0007 27.5 2.8 26 502-527 7-32 (35)
155 3mq7_A Bone marrow stromal ant 37.3 69 0.0023 30.9 6.7 49 248-296 53-105 (121)
156 3nmd_A CGMP dependent protein 35.3 77 0.0026 28.2 6.2 38 261-298 32-69 (72)
157 3na7_A HP0958; flagellar bioge 34.6 3E+02 0.01 29.6 12.4 6 290-295 97-102 (256)
158 3i00_A HIP-I, huntingtin-inter 34.6 1.1E+02 0.0036 29.8 7.8 62 222-300 17-78 (120)
159 3oja_B Anopheles plasmodium-re 32.8 1.7E+02 0.006 34.8 11.3 14 325-338 564-577 (597)
160 1m1j_B Fibrinogen beta chain; 32.5 2.6E+02 0.0088 33.1 12.1 34 252-285 125-158 (464)
161 1zxa_A CGMP-dependent protein 32.2 45 0.0015 29.2 4.2 43 254-296 10-52 (67)
162 2d68_A FOP, FGFR1OP; alpha hel 31.8 11 0.00039 34.2 0.4 33 146-178 13-45 (82)
163 1dvp_A HRS, hepatocyte growth 30.6 2E+02 0.0069 30.2 10.0 52 898-949 39-94 (220)
164 2dfs_A Myosin-5A; myosin-V, in 30.4 1.3E+02 0.0043 39.5 9.9 6 290-295 1030-1035(1080)
165 1x8y_A Lamin A/C; structural p 30.0 85 0.0029 28.5 5.9 48 255-302 28-75 (86)
166 1i84_S Smooth muscle myosin he 28.8 34 0.0012 45.1 4.4 7 159-165 803-809 (1184)
167 2xv5_A Lamin-A/C; structural p 28.2 1E+02 0.0035 27.5 5.9 47 255-301 5-51 (74)
168 3swk_A Vimentin; cytoskeleton, 25.5 2.5E+02 0.0085 25.5 8.2 14 326-339 70-83 (86)
169 4h22_A Leucine-rich repeat fli 25.4 2E+02 0.0067 27.2 7.5 63 231-300 20-82 (103)
170 3swk_A Vimentin; cytoskeleton, 25.1 3.4E+02 0.012 24.6 9.0 11 288-298 68-78 (86)
171 1ic2_A Tropomyosin alpha chain 24.8 3E+02 0.01 24.4 8.6 56 231-286 10-65 (81)
172 1wt6_A Myotonin-protein kinase 24.8 1.4E+02 0.0047 27.1 6.1 30 259-288 42-71 (81)
173 2b6c_A Hypothetical protein EF 24.8 1.8E+02 0.0062 30.4 8.3 61 505-569 127-187 (220)
174 3cvf_A Homer-3, homer protein 24.4 2E+02 0.0067 26.0 7.0 25 271-295 50-74 (79)
175 3mov_A Lamin-B1; LMNB1, B-type 24.2 1E+02 0.0035 28.7 5.4 47 256-302 38-84 (95)
176 1i84_S Smooth muscle myosin he 23.8 88 0.003 41.3 6.8 8 42-49 556-563 (1184)
177 3mq9_A Bone marrow stromal ant 23.2 1.2E+02 0.004 35.4 7.1 11 249-259 426-436 (471)
178 1vdy_A Hypothetical protein (R 22.6 2.3E+02 0.0079 28.1 8.0 71 897-968 45-129 (140)
179 1ic2_A Tropomyosin alpha chain 21.8 3.3E+02 0.011 24.2 8.2 54 230-283 23-76 (81)
180 3gvo_A Pumilio 2, pumilio homo 21.7 3.2E+02 0.011 30.4 10.1 88 898-997 56-149 (351)
181 1x79_B RAB GTPase binding effe 21.6 2.4E+02 0.0082 27.1 7.5 38 239-276 36-73 (112)
182 3ghg_A Fibrinogen alpha chain; 21.1 6.8E+02 0.023 30.0 12.6 13 266-278 114-126 (562)
183 3oja_A Leucine-rich immune mol 20.9 4.2E+02 0.014 30.7 11.3 32 264-295 416-447 (487)
184 1ik9_A DNA repair protein XRCC 20.8 4.3E+02 0.015 27.9 10.1 52 196-247 122-173 (213)
185 3bwt_A Protein PUF4; pumilio, 20.7 3.2E+02 0.011 30.1 9.7 51 939-995 81-135 (333)
186 3ut4_A CTHE_2751, putative unc 20.6 6.2E+02 0.021 24.9 13.0 97 939-1047 30-126 (134)
187 1wlq_A Geminin; coiled-coil; 2 20.1 1.4E+02 0.0048 27.1 5.2 21 217-237 35-55 (83)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.4e-33 Score=334.62 Aligned_cols=506 Identities=18% Similarity=0.184 Sum_probs=378.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
-+..+++-++++++.+|..|++.|..++..+|++.+..+|+|++.+.+ |++++||..+++.+|.|.+++|+..+...++
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll 89 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLL 89 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGH
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 367788889999999999999999999999999999999999998876 6888999999999999999999888888899
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHH
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLL 662 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll 662 (1188)
+.|.++..|+++.||.+|++.|..++..++++.....+.+++..+.+++...+|.+++..+ ..+..... ......++
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l-~~~~~~~~--~~~~~~l~ 166 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLF-SVCYPRVS--SAVKAELR 166 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGH-HHHTTTSC--HHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHhcC--HHHHHHHH
Confidence 9999999999999999999999999999987766667889999999999999999887766 55544332 12233444
Q ss_pred HHHhhhhccCCCccccchhhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhh
Q 001018 663 SYILSSAQRCPPLSGVEGSVESHL----RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLL 737 (1188)
Q Consensus 663 ~~L~~~v~~lp~~~~v~~~la~~l----~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll 737 (1188)
+.+..-+++- +..|+......+ ..++.+. ....++|.+...+. +++..+|.. ...+
T Consensus 167 ~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~---------~~~~l~~~l~~~~~--------d~~~~vr~~a~~~l 227 (588)
T 1b3u_A 167 QYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDN---------VKSEIIPMFSNLAS--------DEQDSVRLLAVEAC 227 (588)
T ss_dssp HHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHH---------HHHTHHHHHHHHHT--------CSCHHHHTTHHHHH
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHh---------HHHHHHHHHHHHhc--------CCcHHHHHHHHHHH
Confidence 4433221111 123332222222 2333333 45678887666443 233455542 2222
Q ss_pred hhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCC
Q 001018 738 ELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFP 817 (1188)
Q Consensus 738 ~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R 817 (1188)
..+.. ..+.+-....++|.+..+. .|.+|+||.+++..+..++..+|.+.+...++|.|+.+++|+...
T Consensus 228 ~~l~~----~~~~~~~~~~~~~~l~~~~---~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~---- 296 (588)
T 1b3u_A 228 VNIAQ----LLPQEDLEALVMPTLRQAA---EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE---- 296 (588)
T ss_dssp HHHHH----HSCHHHHHHHTHHHHHHHH---TCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH----
T ss_pred HHHHH----hCCHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHH----
Confidence 21111 0112234567999999987 899999999999999999999999998889999999999997421
Q ss_pred ccccccccCCCcchhHhhhhhhhch-hh------HHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHH
Q 001018 818 STIHSGIRGLKPRTAVGERLATMGV-LP------LLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVR 890 (1188)
Q Consensus 818 ~a~~~~I~~L~~rtaig~~l~~~~l-LP------~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~ 890 (1188)
+|......+...+. ++ .++. .+..++.++.. +.+|.+ +.. .+.++.
T Consensus 297 -----------vr~~a~~~l~~~~~~~~~~~~~~~~~~----------~l~p~l~~~l~----d~~~~v-R~~-a~~~l~ 349 (588)
T 1b3u_A 297 -----------VRAAASHKVKEFCENLSADCRENVIMS----------QILPCIKELVS----DANQHV-KSA-LASVIM 349 (588)
T ss_dssp -----------HHHHHHHHHHHHHHTSCTTTHHHHHHH----------THHHHHHHHHT----CSCHHH-HHH-HHTTGG
T ss_pred -----------HHHHHHHHHHHHHHHhChhhhhhHHHH----------HHHHHHHHHhc----CCCHHH-HHH-HHHHHH
Confidence 12222222211111 10 1111 12234555443 345777 332 244443
Q ss_pred hhh---chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHH
Q 001018 891 FLC---TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAV 967 (1188)
Q Consensus 891 ~Lg---~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~L 967 (1188)
.++ ..+.....++|.+..+++|+.++||.+++..|..+...+|.+.....++|.|.++.+|++|+||.+++.+++.+
T Consensus 350 ~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 350 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp GGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 333 23445678999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHH
Q 001018 968 AQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFC 1046 (1188)
Q Consensus 968 A~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~ 1046 (1188)
+..+|.+++.+.+.|.+..++.|++..+|..++.+++.++..+++.+.. .++|.|..+..-+|+ ..|...+.++.
T Consensus 430 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~----~~R~~a~~~l~ 505 (588)
T 1b3u_A 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY----LHRMTTLFCIN 505 (588)
T ss_dssp HHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH----HHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH----HHHHHHHHHHH
Confidence 9999998777889999999999999999999999999999999988766 899999988776665 34766766666
Q ss_pred HHHHhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018 1047 ESIRALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus 1047 ~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
.....+. .+...+.++|.|..+++|.+
T Consensus 506 ~l~~~~~-----~~~~~~~~~~~l~~~l~d~~ 532 (588)
T 1b3u_A 506 VLSEVCG-----QDITTKHMLPTVLRMAGDPV 532 (588)
T ss_dssp HHHHHHH-----HHHHHHHTHHHHHHGGGCSC
T ss_pred HHHHhcC-----HHHHHHHHHHHHHhhCCCCC
Confidence 6555443 33466789999999988765
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.1e-30 Score=307.76 Aligned_cols=411 Identities=15% Similarity=0.138 Sum_probs=307.6
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh
Q 001018 492 ERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF 571 (1188)
Q Consensus 492 ~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~ 571 (1188)
+.+.....+..++.++..+++|+++.||..+++.++.++..+|++....+++|.+..+.+|+++.||..++++++.++..
T Consensus 154 ~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 154 YPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 34445667889999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc
Q 001018 572 VRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 572 vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~ 651 (1188)
++++.....++|.+.++++|++|.||+++++.|+.++..++++....++.+.|..+++|+++.||.+++..+ +.++...
T Consensus 234 ~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l-~~~~~~~ 312 (588)
T 1b3u_A 234 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV-KEFCENL 312 (588)
T ss_dssp SCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHH-HHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHH-HHHHHHh
Confidence 998877788999999999999999999999999999998876655568999999999999999999998776 5555433
Q ss_pred cchH---HHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCc
Q 001018 652 SKLD---HILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSE 728 (1188)
Q Consensus 652 ~~~~---~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ 728 (1188)
.... ..+..+++.+. .+-.+.+|+||. .....+..+..
T Consensus 313 ~~~~~~~~~~~~l~p~l~---------------------~~l~d~~~~vR~---~a~~~l~~l~~--------------- 353 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIK---------------------ELVSDANQHVKS---ALASVIMGLSP--------------- 353 (588)
T ss_dssp CTTTHHHHHHHTHHHHHH---------------------HHHTCSCHHHHH---HHHTTGGGGHH---------------
T ss_pred ChhhhhhHHHHHHHHHHH---------------------HHhcCCCHHHHH---HHHHHHHHHHH---------------
Confidence 2110 11111222211 011222344332 11111110000
Q ss_pred ccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhC
Q 001018 729 ETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVG 808 (1188)
Q Consensus 729 evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~ 808 (1188)
+.+-+-...+++|.+..+. .|.++.||.+++..+..++..+|.+.....++|.+..+++
T Consensus 354 ------------------~~~~~~~~~~l~p~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 354 ------------------ILGKDNTIEHLLPLFLAQL---KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412 (588)
T ss_dssp ------------------HHCHHHHHHHTHHHHHHHH---TCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred ------------------HhhHhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 0000111233445444443 4555555555555555555555554444444554444443
Q ss_pred CccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHH
Q 001018 809 DNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNA 888 (1188)
Q Consensus 809 D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~a 888 (1188)
| .+|++ +.. .+.+
T Consensus 413 d-----------------------------------------------------------------~~~~v-r~~-~~~~ 425 (588)
T 1b3u_A 413 D-----------------------------------------------------------------AKWRV-RLA-IIEY 425 (588)
T ss_dssp C-----------------------------------------------------------------SSHHH-HHH-HHHH
T ss_pred C-----------------------------------------------------------------CCchH-HHH-HHHH
Confidence 3 23444 211 1233
Q ss_pred HHhhh---chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHH
Q 001018 889 VRFLC---TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFG 965 (1188)
Q Consensus 889 i~~Lg---~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~ 965 (1188)
+..++ +.+.....++|.+..++.|+.+.||..++..+..+...+|.++....++|.|..+.+|++|.||..++.+++
T Consensus 426 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505 (588)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 32221 123344679999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCC
Q 001018 966 AVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPS 1030 (1188)
Q Consensus 966 ~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN 1030 (1188)
.++..+|.+.+.+++.|.+..++.|+++++|..++++|+.++..++..+.. .++|.|..+.+-++
T Consensus 506 ~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d 571 (588)
T 1b3u_A 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQD 571 (588)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCc
Confidence 999999999899999999999999999999999999999999999999887 89999999865443
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.85 E-value=8.7e-19 Score=229.59 Aligned_cols=530 Identities=11% Similarity=0.072 Sum_probs=336.6
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh
Q 001018 496 DTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE 575 (1188)
Q Consensus 496 ~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e 575 (1188)
++.....++..+++.+.|+++.+|.+|+..+..++..+++ .....++|.+++.+.|+.+.||..++.+++.++..++++
T Consensus 42 ~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~ 120 (1230)
T 1u6g_C 42 DDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPA 120 (1230)
T ss_dssp CTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--
T ss_pred ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCc
Confidence 4455678888888989999999999999999999998876 567789999999888899999999999999999998865
Q ss_pred h--------hhhhhHHHHHHhhcC-CcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHhhH
Q 001018 576 I--------RDSLILSIVQQLVED-SATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKELL 644 (1188)
Q Consensus 576 ~--------r~slLL~~LqqL~eD-~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Ll 644 (1188)
. +...++|.|.....| +.|.||..|...|..++..++... ...++.+.+++.+.|++..||..|+..+
T Consensus 121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al- 199 (1230)
T 1u6g_C 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL- 199 (1230)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH-
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-
Confidence 2 456689999998884 899999999999999997665422 3568999999999999999999998877
Q ss_pred HHHHhcccch--HHHHHHHHHHHhhhhccCCC-ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001018 645 PAVINWGSKL--DHILRVLLSYILSSAQRCPP-LSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPF 721 (1188)
Q Consensus 645 pala~~~~~~--~~ll~~ll~~L~~~v~~lp~-~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf 721 (1188)
..++...... .++++.++..|... .-+. +..+-..+.......|+.- . ..+..++|.++..+.
T Consensus 200 ~~l~~~~~~~~~~~~l~~l~~~L~~~--~~~~~r~~a~~~l~~l~~~~~~~~----~---~~l~~l~~~ll~~l~----- 265 (1230)
T 1u6g_C 200 GHLVMSCGNIVFVDLIEHLLSELSKN--DSMSTTRTYIQCIAAISRQAGHRI----G---EYLEKIIPLVVKFCN----- 265 (1230)
T ss_dssp HHHTTTC----CTTHHHHHHHHHHHT--CSSCSCTTHHHHHHHHHHHSSGGG----T---TSCTTHHHHHHHHHS-----
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHhHHHH----H---HHHHHHHHHHHHHhc-----
Confidence 6666544321 23444555554332 1011 1111111211111222211 1 134567776666543
Q ss_pred CCCCCCccccc-chhhhhhhhcCCCCccchhhHHhhhhHHHHHhhc----------------------------------
Q 001018 722 SSVSLSEETVF-PSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLAC---------------------------------- 766 (1188)
Q Consensus 722 ~s~~qd~evrl-~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~---------------------------------- 766 (1188)
+++.++|- ....+..+..... ..+.-....++|.+.+...
T Consensus 266 ---d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1230)
T 1u6g_C 266 ---VDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 340 (1230)
T ss_dssp ---SCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC--------------------------------
T ss_pred ---CCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccc
Confidence 12333432 1111111100000 0011123334444433221
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhh---------
Q 001018 767 LLPEKEDNLRNRITKFLLAVSKQFGD--SYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGE--------- 835 (1188)
Q Consensus 767 ~~~D~sWrVR~Aia~~l~~La~~fG~--e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~--------- 835 (1188)
.-.|.+|+||.+++..+..++..+|. ...-..++|.++..++|..+. +|.++...+..+. ...|.
T Consensus 341 ~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~--Vr~~a~~~l~~l~--~~~~~~~~~~~~~~ 416 (1230)
T 1u6g_C 341 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREEN--VKADVFHAYLSLL--KQTRPVQSWLCDPD 416 (1230)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSH--HHHHHHHHHHHHH--HHHCCC--------
T ss_pred cccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHHHH--HHhccccccccCcc
Confidence 01356899999999999999998885 333446678888888886421 1321111110000 00000
Q ss_pred --------hhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh---c--hhhHHHhH
Q 001018 836 --------RLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC---T--FEEHHTMV 902 (1188)
Q Consensus 836 --------~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg---~--~e~~~~~i 902 (1188)
...-...+|.++. .+.+... +.+|.+ +.. .+.++..++ . ...+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~l~~ll~--------------~l~~~l~----~~~~~v-r~~-~~~~L~~l~~~~~~~l~~~l~~l 476 (1230)
T 1u6g_C 417 AMEQGETPLTMLQSQVPNIVK--------------ALHKQMK----EKSVKT-RQC-CFNMLTELVNVLPGALTQHIPVL 476 (1230)
T ss_dssp ----CCCHHHHHHHHTTHHHH--------------HHHHHTT----CSCHHH-HHH-HHHHHHHHHHHSTTTTGGGHHHH
T ss_pred ccccccchHHHHHHHhhHHHH--------------HHHHHhc----cCCHHH-HHH-HHHHHHHHHHHchhhhHHHHHHH
Confidence 0000011221111 1122211 234555 221 233332221 1 23467899
Q ss_pred HHHHHHhhcCCCh--hHHHHHHHHHHHHHhhhchhh---hhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch----
Q 001018 903 FNILWEMVVSSNI--DMKINAANLLKVIVPYINAKV---TSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN---- 973 (1188)
Q Consensus 903 LpiL~~lv~D~~p--nVR~naak~L~~L~~~ig~~~---ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~---- 973 (1188)
+|.+.+++.|+.+ .||..++..+..+...+|.+. .-..++|.|....+|++++||..++.+++.++..+|.
T Consensus 477 l~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~ 556 (1230)
T 1u6g_C 477 VPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQP 556 (1230)
T ss_dssp HHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccc
Confidence 9999999999976 999999999999988888764 3468999999999999999999999999999998876
Q ss_pred -----HHHHHHHHHHHHHHh--cCCChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHhhcCCCCChhhHHHHHHHH
Q 001018 974 -----DMIVDKIRVQMDAFL--EDGSHEATVAVVRALAVAVPHTTERLRD---YLLSKIFQLSAVPSSSSDVMRRRERAN 1043 (1188)
Q Consensus 974 -----e~~~ekl~~~~~slL--~D~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L~~vpN~~~~~~~R~~vAk 1043 (1188)
..+.+++.+.+..++ .|.++.+|.+++++++.++...+..+.. .++|.|........ .|.+.++
T Consensus 557 ~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~------~r~~~~~ 630 (1230)
T 1u6g_C 557 SSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI------TRLTTVK 630 (1230)
T ss_dssp CCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS------HHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch------hHHHHHH
Confidence 356788999999999 8889999999999999999888765432 46666655443332 3777766
Q ss_pred HHHHHHHhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018 1044 AFCESIRALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus 1044 ~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
++-.+..+.. ....+.+...++|.|..++.|.+
T Consensus 631 al~~i~~~~~--~~~~~~~~~~i~~~L~~~l~~~~ 663 (1230)
T 1u6g_C 631 ALTLIAGSPL--KIDLRPVLGEGVPILASFLRKNQ 663 (1230)
T ss_dssp HHHHHTTCSS--CCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhCcc--ccchHHHHHHHHHHHHHHHHhCC
Confidence 6655443221 12234556677787777766543
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.81 E-value=8.3e-16 Score=192.05 Aligned_cols=550 Identities=11% Similarity=0.067 Sum_probs=337.6
Q ss_pred CChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhhC
Q 001018 495 PDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM-YEERRLLVAQSCGELAEFVR 573 (1188)
Q Consensus 495 ~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd-~dEVRlLvAescg~La~~vg 573 (1188)
.++..|..++..+++.+.++++.+|..++..+..||...+|...+.+++|++.+.+++. .+.+|..+...++.+...++
T Consensus 88 l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 56778999999999999999999999999999999999888667889999999988887 88999999999999998766
Q ss_pred hh-----hhhhhhHHHHHHhhcCC--cHHHHHHHHHHHHhhcccCCCch----hhhhHHHHHHHhccCCChhHHHHHHHh
Q 001018 574 PE-----IRDSLILSIVQQLVEDS--ATVVREAAARNLALLLPLFPNTD----KYFKVEDLMFQLVCDPSGVVVETTFKE 642 (1188)
Q Consensus 574 ~e-----~r~slLL~~LqqL~eD~--e~~VR~aAAksL~~l~~~l~~~d----~~~qi~~~f~~Ll~D~s~~Vr~aa~~~ 642 (1188)
++ .+...+++.+.+.+.|. ++.||.++++.|..++..++... ....+.+.+..++.|+.+.||..+...
T Consensus 168 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp TTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 54 34556888888888888 89999999999999877664321 123477778888999999999999887
Q ss_pred hHHHHHhcccchHHHHH-HHHHHHhhhhccCCCccccchhhhhhhhhhhhhh-----------hh---hHHHHHHHHHHH
Q 001018 643 LLPAVINWGSKLDHILR-VLLSYILSSAQRCPPLSGVEGSVESHLRVLGERE-----------RW---NLEVLLRMMAEL 707 (1188)
Q Consensus 643 Llpala~~~~~~~~ll~-~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~-----------sW---rV~~~l~~l~~L 707 (1188)
+..............+. .+++.+...+.+. +..++......+..+.+.. .| .-..+-..+..+
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 325 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV 325 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHH
Confidence 73332222211222223 3444333222211 1122211111011111100 00 000112355778
Q ss_pred HHHHHHHHhhhCCCCCCCCCcccccc-hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHH
Q 001018 708 LPFMQKNAIETCPFSSVSLSEETVFP-SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAV 786 (1188)
Q Consensus 708 LP~i~~~l~~~~pf~s~~qd~evrl~-~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~L 786 (1188)
+|.++..+.+...- .++++..+|.. ...+..+.. ..+ +-+...++|.+.+.. .+.+|++|.+++..+..+
T Consensus 326 l~~ll~~l~~~~~d-~~d~~~~~r~~a~~~L~~l~~----~~~-~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 326 VPNLLNLLTRQNED-PEDDDWNVSMSAGACLQLFAQ----NCG-NHILEPVLEFVEQNI---TADNWRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHTTCCCCC--CCCCCHHHHHHHHHHHHHHH----HHG-GGGHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccc-cccccCcHHHHHHHHHHHHHH----Hcc-HhHHHHHHHHHHHHc---CCCChhHHHHHHHHHHHH
Confidence 88777765421100 00111223322 222221111 001 123456777777774 789999999999999999
Q ss_pred HHhhCHHHHH---HHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHH
Q 001018 787 SKQFGDSYLT---HIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADY 863 (1188)
Q Consensus 787 a~~fG~e~t~---~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~ny 863 (1188)
++..+++... ..++|.++..++|.... +| ..+..-+...+. .+-..+.+ ...+...
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~--vr-------------~~a~~~l~~l~~--~~~~~~~~----~~~~~~~ 455 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQ--VK-------------ETTAWCIGRIAD--SVAESIDP----QQHLPGV 455 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSCHH--HH-------------HHHHHHHHHHHH--HHGGGSCT----TTTHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCcHH--HH-------------HHHHHHHHHHHH--HhhhhcCC----HHHHHHH
Confidence 9887744333 35788888888886321 12 211111100000 00000000 0001111
Q ss_pred HHHHHhhcccccccccchhhhHHHHHHhhhch---------hhHHHhHHHHHHHhhc--CCChhHHHHHHHHHHHHHhhh
Q 001018 864 LRKLLVEGTMKENHTVKCNAEIVNAVRFLCTF---------EEHHTMVFNILWEMVV--SSNIDMKINAANLLKVIVPYI 932 (1188)
Q Consensus 864 L~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~---------e~~~~~iLpiL~~lv~--D~~pnVR~naak~L~~L~~~i 932 (1188)
+.-+...+.. ++.+.... +.++..++.. ..+...+++.+..++. |..++||..++..+..++...
T Consensus 456 l~~l~~~l~~--~~~v~~~a--~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 456 VQACLIGLQD--HPKVATNC--SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHTS--CHHHHHHH--HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcc--ChHHHHHH--HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 2222211111 13441222 4444444321 1456778888999987 455899999999999999998
Q ss_pred chhhh--hhhhhhHHHhhcc---------------CCCcchHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhcCCCh
Q 001018 933 NAKVT--SMQVLPALVTLGS---------------DQNLNVKYASIDAFGAVAQHFKND--MIVDKIRVQMDAFLEDGSH 993 (1188)
Q Consensus 933 g~~~l--s~~VlPaLv~Las---------------D~d~dVR~aaieAl~~LA~~l~~e--~~~ekl~~~~~slL~D~~~ 993 (1188)
+.+.. -..++|.+.+... +....+|..++.+++.++..+|.+ .+.+.+.+.+...+.+.+.
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 611 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCC
Confidence 87632 2456666665433 335678899999999999888874 3467888888888988877
Q ss_pred -hHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHH
Q 001018 994 -EATVAVVRALAVAVPHTTERLRD---YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPA 1069 (1188)
Q Consensus 994 -~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~ 1069 (1188)
.+|..++.+++.++..++..+.. .++|.|....+.++. .-|......+..+.+.+... + ......++|.
T Consensus 612 ~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~----~vr~~a~~~l~~l~~~~~~~-~--~~~~~~l~~~ 684 (861)
T 2bpt_A 612 AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDS----PVSITAVGFIADISNSLEED-F--RRYSDAMMNV 684 (861)
T ss_dssp GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTS----HHHHHHHHHHHHHHHHTGGG-G--HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHHHhchh-c--cchHHHHHHH
Confidence 89999999999998888776654 588888877764443 22656666666655554321 1 1223456777
Q ss_pred HHHHHhccCCCChHHHHHH
Q 001018 1070 IQNLLKDADSLDPAHKEAL 1088 (1188)
Q Consensus 1070 L~~L~~D~d~l~~~~k~~l 1088 (1188)
|...+.|.+ .++..|...
T Consensus 685 l~~~l~~~~-~~~~vr~~~ 702 (861)
T 2bpt_A 685 LAQMISNPN-ARRELKPAV 702 (861)
T ss_dssp HHHHHHCTT-CCTTHHHHH
T ss_pred HHHHhCCcc-ccHhhhHHH
Confidence 777676543 445555544
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=5.8e-17 Score=204.65 Aligned_cols=548 Identities=14% Similarity=0.112 Sum_probs=334.5
Q ss_pred hHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhh-------HhhHHHHHHHHhh
Q 001018 479 HREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRT-------EMELLPQCWEQIN 551 (1188)
Q Consensus 479 ~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert-------~~ELLP~l~eli~ 551 (1188)
.|..+...+...+... .+..+.+++..+..++.++++.+|..++..+..+.+..++... ...++|.+.+..+
T Consensus 106 vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 184 (852)
T 4fdd_A 106 IRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 184 (852)
T ss_dssp HHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc
Confidence 3444444433333322 3456778999999999999999999999999999998876533 4668898888888
Q ss_pred cCchhHHHHHHHHHHHHHhhhChhh--hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHh
Q 001018 552 HMYEERRLLVAQSCGELAEFVRPEI--RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQL 627 (1188)
Q Consensus 552 Dd~dEVRlLvAescg~La~~vg~e~--r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~L 627 (1188)
|...+||..++.+++.+....+... .-..+++.+.+++.|+++.||..|++.|..++...++.. ...++++.+..+
T Consensus 185 ~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~ 264 (852)
T 4fdd_A 185 HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264 (852)
T ss_dssp CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 8999999999998887765544322 123478888888999999999999999999998765421 235789999999
Q ss_pred ccCCChhHHHHHHHhhHHHHHhcccc---hHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhh----hhhhHHHH
Q 001018 628 VCDPSGVVVETTFKELLPAVINWGSK---LDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGER----ERWNLEVL 700 (1188)
Q Consensus 628 l~D~s~~Vr~aa~~~Llpala~~~~~---~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d----~sWrV~~~ 700 (1188)
+.|.++.||..|...+ ..++.-... ....+..+++.++..+.....+.. .+......-.++ ..|++|..
T Consensus 265 ~~~~~~~vr~~a~e~l-~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~---~~~~d~~ed~~~dd~~~~~~vr~~ 340 (852)
T 4fdd_A 265 TQDQDENVALEACEFW-LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII---LLKGDVEGGSGGDDTISDWNLRKC 340 (852)
T ss_dssp HTCSSHHHHHHHHHHH-HHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHH---HHHC------------CCCCHHHH
T ss_pred ccCCcHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHH---HhcCCcccccccccccccchHHHH
Confidence 9999999999998766 455432100 011122334443322100000000 000000000000 34555430
Q ss_pred ----HH---------HHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhc
Q 001018 701 ----LR---------MMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLAC 766 (1188)
Q Consensus 701 ----l~---------~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~ 766 (1188)
+. ++..++|.+...+. +.+..+|.. ...+..+..+... .+.-....++|.+..+.
T Consensus 341 a~~~L~~la~~~~~~~~~~l~~~l~~~l~--------~~~~~~R~aa~~alg~i~~~~~~--~~~~~l~~~l~~l~~~l- 409 (852)
T 4fdd_A 341 SAAALDVLANVYRDELLPHILPLLKELLF--------HHEWVVKESGILVLGAIAEGCMQ--GMIPYLPELIPHLIQCL- 409 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHT--------CSSHHHHHHHHHHHHHTTTTTHH--HHGGGHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHc-
Confidence 00 23345554444322 123444442 1111111111100 12224566888888885
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchh
Q 001018 767 LLPEKEDNLRNRITKFLLAVSKQFGDS---YLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVL 843 (1188)
Q Consensus 767 ~~~D~sWrVR~Aia~~l~~La~~fG~e---~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lL 843 (1188)
.|.+++||.+++..+..+|+.+|.. .....++|.++..++|.... +|.++...+.++. .. ....+.
T Consensus 410 --~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~--vr~~a~~aL~~l~------~~-~~~~l~ 478 (852)
T 4fdd_A 410 --SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR--VQEAACSAFATLE------EE-ACTELV 478 (852)
T ss_dssp --TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHH--HHHHHHHHHHHHH------HH-HGGGGG
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHH------HH-hhHhhH
Confidence 9999999999999999999987652 23456788889999886311 1322222211110 00 011112
Q ss_pred hHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh-------chhhHHHhHHHHHH---HhhcCC
Q 001018 844 PLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC-------TFEEHHTMVFNILW---EMVVSS 913 (1188)
Q Consensus 844 P~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg-------~~e~~~~~iLpiL~---~lv~D~ 913 (1188)
| |+..+++ .|..+..... ......++.+|..++ ..+.+.+.++|.+. ..+.|.
T Consensus 479 ~-~l~~ll~----------~L~~~l~~~~------~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 479 P-YLAYILD----------TLVFAFSKYQ------HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp G-GHHHHHH----------HHHHHHHHCC------HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred h-HHHHHHH----------HHHHHHHHhC------hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc
Confidence 2 1111211 1111211110 001111233443332 12447788889887 567899
Q ss_pred ChhHHHHHHHHHHHHHhhhchhhh--hhhhhhHHHhhc-----------------cCCCcchHHHHHHHHHHHHHhhchH
Q 001018 914 NIDMKINAANLLKVIVPYINAKVT--SMQVLPALVTLG-----------------SDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 914 ~pnVR~naak~L~~L~~~ig~~~l--s~~VlPaLv~La-----------------sD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
.+.+| .++..+..++..+|.... ...++|.++.+. +.++.++|..++.+++.++..+|.+
T Consensus 542 ~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~ 620 (852)
T 4fdd_A 542 DKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620 (852)
T ss_dssp CTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG
T ss_pred cHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh
Confidence 99997 899999999999987543 344555444432 2347889999999999999999865
Q ss_pred H--HH--HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Q 001018 975 M--IV--DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD---YLLSKIFQLSAVPSSSSDVMRRRERANAFCE 1047 (1188)
Q Consensus 975 ~--~~--ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~ 1047 (1188)
+ +. .++.+.+..++.|+++.+|..+...++.++..++..+.. .++|.+.+.....++ .-|.+.+.++.+
T Consensus 621 ~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~----~v~~~a~~alg~ 696 (852)
T 4fdd_A 621 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI----SVCNNATWAIGE 696 (852)
T ss_dssp GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSH----HHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccch----HHHHHHHHHHHH
Confidence 3 22 578999999999999999999999999998887765543 577877776643322 347788888877
Q ss_pred HHHhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018 1048 SIRALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus 1048 a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
....+... +. ..-..++|.|-.++++++
T Consensus 697 i~~~~~~~-~~--p~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 697 ISIQMGIE-MQ--PYIPMVLHQLVEIINRPN 724 (852)
T ss_dssp HHHHHGGG-GG--GGTHHHHHHHHHHHTCSS
T ss_pred HHHHhhHh-HH--HHHHHHHHHHHHHhCCCC
Confidence 77666421 21 223567888888887665
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.79 E-value=5.4e-16 Score=193.71 Aligned_cols=521 Identities=11% Similarity=0.127 Sum_probs=330.1
Q ss_pred hHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhCch-----hhHhhHHHHHHHHhhcC--chhHHHHHHHHHHHHHh
Q 001018 499 TRDSLTHTLFNLIKRP-DEKQRRIIMDACVTLAKNVGEM-----RTEMELLPQCWEQINHM--YEERRLLVAQSCGELAE 570 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdd-dp~vRr~aa~~l~~iA~~lg~e-----rt~~ELLP~l~eli~Dd--~dEVRlLvAescg~La~ 570 (1188)
.+.+++..++..++++ ++.+|..++..+..|.+.++++ .....|+|.+...+.|. ..+||..++++++.+..
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999 9999999999999999988764 45677899888888877 78999999999999887
Q ss_pred hhChhh----hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--hhh-hHHHHHHHhccCCChhHHHHHHHhh
Q 001018 571 FVRPEI----RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD--KYF-KVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 571 ~vg~e~----r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~-qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+++... ....+++.+.+++.++.|.||..+++.|..++...++.- ... .+.+++...+.|....||..+...+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 765432 234678999999999999999999999999998766432 234 7888888999999999999998766
Q ss_pred HHHHHhccc------------------chHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHH----H
Q 001018 644 LPAVINWGS------------------KLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVL----L 701 (1188)
Q Consensus 644 lpala~~~~------------------~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~----l 701 (1188)
..++.... -....+..+++.++..+.+...+ ..++.|.+|.. +
T Consensus 291 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d--------------~~d~~~~~r~~a~~~L 355 (861)
T 2bpt_A 291 -STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED--------------PEDDDWNVSMSAGACL 355 (861)
T ss_dssp -HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC---------------CCCCCHHHHHHHHHH
T ss_pred -HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccc--------------cccccCcHHHHHHHHH
Confidence 44433210 01122344455554332211100 00112333210 0
Q ss_pred ---------HHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCC
Q 001018 702 ---------RMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEK 771 (1188)
Q Consensus 702 ---------~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~ 771 (1188)
.++..++|.+.+.+. +.+..+|-. ...+..+..+. .-..+......++|.+.... .|.
T Consensus 356 ~~l~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~~il~~l~~~l---~d~ 423 (861)
T 2bpt_A 356 QLFAQNCGNHILEPVLEFVEQNIT--------ADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLM---NDQ 423 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTT--------CSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHHccHhHHHHHHHHHHHHcC--------CCChhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHc---CCC
Confidence 023344443333221 112223321 11111111110 00112334556888888875 899
Q ss_pred cHHHHHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhh---hhchhh
Q 001018 772 EDNLRNRITKFLLAVSKQFGDS----YLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLA---TMGVLP 844 (1188)
Q Consensus 772 sWrVR~Aia~~l~~La~~fG~e----~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~---~~~lLP 844 (1188)
++.||.+++..+..++..+|.+ .....++|.++..++|+..+ |.++...+..+ ..... ...+.|
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v---~~~a~~al~~l------~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKV---ATNCSWTIINL------VEQLAEATPSPIYN 494 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHH---HHHHHHHHHHH------HHHHSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHH---HHHHHHHHHHH------HHhcccccchhhHH
Confidence 9999999999999999998764 24567889999999886321 21111110000 00000 000001
Q ss_pred HHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh---c--hhhHHHhHHHHHHHhhc--------
Q 001018 845 LLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC---T--FEEHHTMVFNILWEMVV-------- 911 (1188)
Q Consensus 845 ~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg---~--~e~~~~~iLpiL~~lv~-------- 911 (1188)
|+..++ ..+.++... .+.+|.+ +.. .+.++..++ . ...+...++|.+.+.+.
T Consensus 495 -~~~~il----------~~L~~~l~~--~d~~~~v-r~~-a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 559 (861)
T 2bpt_A 495 -FYPALV----------DGLIGAANR--IDNEFNA-RAS-AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN 559 (861)
T ss_dssp -GHHHHH----------HHHHHHHTC--SCCGGGH-HHH-HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred -HHHHHH----------HHHHHHHhC--cCcchHH-HHH-HHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111 112222211 1122444 221 244443332 1 12345567777776665
Q ss_pred -------CCChhHHHHHHHHHHHHHhhhchhhh--hhhhhhHHHhhccCCCc-chHHHHHHHHHHHHHhhchHH--HHHH
Q 001018 912 -------SSNIDMKINAANLLKVIVPYINAKVT--SMQVLPALVTLGSDQNL-NVKYASIDAFGAVAQHFKNDM--IVDK 979 (1188)
Q Consensus 912 -------D~~pnVR~naak~L~~L~~~ig~~~l--s~~VlPaLv~LasD~d~-dVR~aaieAl~~LA~~l~~e~--~~ek 979 (1188)
++.+.+|..++..|..++..+|.... ...++|.+..+.++.+. .||..++.+++.++..+|.++ +..+
T Consensus 560 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~ 639 (861)
T 2bpt_A 560 QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639 (861)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34678999999999999999987533 56789999998888888 999999999999999988754 4688
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhcccc
Q 001018 980 IRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD---YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATE 1056 (1188)
Q Consensus 980 l~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~ 1056 (1188)
+.|.+..++.|+++.+|..++.+++.++..++..+.. .++|.+......++... .-|.....++......+...+
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~vr~~~~~~l~~l~~~~~~~~ 717 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARR--ELKPAVLSVFGDIASNIGADF 717 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCT--THHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccH--hhhHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999998888776554 57777776665554211 226667667766666543221
Q ss_pred CchhhhhhhHHHHHHHHHh
Q 001018 1057 LSATSVRDFLLPAIQNLLK 1075 (1188)
Q Consensus 1057 l~~~~v~~~ilP~L~~L~~ 1075 (1188)
. ..-+.++|.|.....
T Consensus 718 ~---~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 718 I---PYLNDIMALCVAAQN 733 (861)
T ss_dssp H---HHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHHHh
Confidence 1 122456677666554
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.78 E-value=1.8e-15 Score=189.50 Aligned_cols=555 Identities=11% Similarity=0.060 Sum_probs=330.0
Q ss_pred CCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC--chhHHHHHHHHHHHHHhh
Q 001018 494 HPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM--YEERRLLVAQSCGELAEF 571 (1188)
Q Consensus 494 h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd--~dEVRlLvAescg~La~~ 571 (1188)
+.++..|..++..++..+.++++.+ +.++..+..||...++...+.+++|.+.+.+++. .+.+|..+...++.+.+.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999 9999999999999888777899999999988888 889999999999999988
Q ss_pred hChh---hhhhhhHHHHHHhhcCC--cHHHHHHHHHHHHhhcccCCCchh----hhhHHHHHHHhccCCChhHHHHHHHh
Q 001018 572 VRPE---IRDSLILSIVQQLVEDS--ATVVREAAARNLALLLPLFPNTDK----YFKVEDLMFQLVCDPSGVVVETTFKE 642 (1188)
Q Consensus 572 vg~e---~r~slLL~~LqqL~eD~--e~~VR~aAAksL~~l~~~l~~~d~----~~qi~~~f~~Ll~D~s~~Vr~aa~~~ 642 (1188)
++++ .+...+++.+.+...|. ++.||.++++.|..++..++.... ...+.+.+..++.|....||..+.+.
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~ 240 (876)
T 1qgr_A 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (876)
T ss_dssp SCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred cCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 7643 34455788888888877 699999999999999887653211 12477888888999999999998887
Q ss_pred hHHHHHhcccchHHHHH-HHHHHHhhhhccCCCccccchhhhhhhhhhhh--------------------hhhhhHHHHH
Q 001018 643 LLPAVINWGSKLDHILR-VLLSYILSSAQRCPPLSGVEGSVESHLRVLGE--------------------RERWNLEVLL 701 (1188)
Q Consensus 643 Llpala~~~~~~~~ll~-~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~--------------------d~sWrV~~~l 701 (1188)
|...+..........+. .+++.++....+. +..++......+..+.+ ...|. +.-
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 316 (876)
T 1qgr_A 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF--YAK 316 (876)
T ss_dssp HHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCC--HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHH--HHH
Confidence 73333222221222222 4444443322111 11111110000000000 00011 111
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCC--CCCcccccc-hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHH
Q 001018 702 RMMAELLPFMQKNAIETCPFSSV--SLSEETVFP-SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNR 778 (1188)
Q Consensus 702 ~~l~~LLP~i~~~l~~~~pf~s~--~qd~evrl~-~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~A 778 (1188)
..+..++|.++..+.... .+ +.+..+|.. ...+..+... .+ +-+...++|.+.+. +.|.+|++|.+
T Consensus 317 ~~~~~ll~~ll~~l~~~~---~d~~~~~~~~r~~a~~~l~~l~~~----~~-~~~~~~~l~~l~~~---l~~~~~~~r~~ 385 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQD---ENDDDDDWNPCKAAGVCLMLLATC----CE-DDIVPHVLPFIKEH---IKNPDWRYRDA 385 (876)
T ss_dssp HHHHHHHHHHHHHTTCCC---SSCCTTCCCHHHHHHHHHHHHHHH----HG-GGGHHHHHHHHHHH---TTCSSHHHHHH
T ss_pred HHHHHHhHHHHHHhhccc---ccccccccHHHHHHHHHHHHHHHH----Cc-HhhHHHHHHHHHHH---ccCCChHHHHH
Confidence 245778887777654211 11 112233332 2222211110 01 12345677777776 48999999999
Q ss_pred HHHHHHHHHHhhCHHH---HHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhh----hchhhHHhhhhc
Q 001018 779 ITKFLLAVSKQFGDSY---LTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLAT----MGVLPLLLAGVL 851 (1188)
Q Consensus 779 ia~~l~~La~~fG~e~---t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~----~~lLP~il~gVL 851 (1188)
++..+..++..++++. ....++|.++..++|+... +|.++...+.++ +..... ...++.++..++
T Consensus 386 a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~--vr~~a~~~l~~~------~~~~~~~~~~~~~l~~~l~~l~ 457 (876)
T 1qgr_A 386 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV--VRDTAAWTVGRI------CELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp HHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH--HHHHHHHHHHHH------HHHCGGGTSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHH------HHhCchhcccHHHHHHHHHHHH
Confidence 9999999999888543 2346889999999986421 133222111111 111100 011222222222
Q ss_pred CCCCcch----hhhHHHHHHHhhcc-------c----ccccccchhhhHHHH----------------------HHhhh-
Q 001018 852 GAPSKHD----QLADYLRKLLVEGT-------M----KENHTVKCNAEIVNA----------------------VRFLC- 893 (1188)
Q Consensus 852 ~~~~~~~----~l~nyL~rLt~~~s-------~----~~~W~v~~~p~ll~a----------------------i~~Lg- 893 (1188)
....+.. .....+..+..... . ...-...+.+.++.. +..++
T Consensus 458 ~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~ 537 (876)
T 1qgr_A 458 EGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH
Confidence 1111111 01112222222111 0 000000122211111 11111
Q ss_pred ----chhhHHHhHHHHHHHhhcC-----------C----ChhHHHHHHHHHHHHHhhhc-hhh--hhhhhhhHHHhhccC
Q 001018 894 ----TFEEHHTMVFNILWEMVVS-----------S----NIDMKINAANLLKVIVPYIN-AKV--TSMQVLPALVTLGSD 951 (1188)
Q Consensus 894 ----~~e~~~~~iLpiL~~lv~D-----------~----~pnVR~naak~L~~L~~~ig-~~~--ls~~VlPaLv~LasD 951 (1188)
....+...++|.+.+.+.+ . .+++|..+...|..++..+| ... ....++|.|..+.++
T Consensus 538 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 617 (876)
T 1qgr_A 538 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQS 617 (876)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--
T ss_pred HCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHh
Confidence 0112234455555544331 1 26778888888888888887 432 346788999988887
Q ss_pred CC--cchHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhcccCCHHHHH---HHHHHHH
Q 001018 952 QN--LNVKYASIDAFGAVAQHFKNDM--IVDKIRVQMDAFLEDG-SHEATVAVVRALAVAVPHTTERLRD---YLLSKIF 1023 (1188)
Q Consensus 952 ~d--~dVR~aaieAl~~LA~~l~~e~--~~ekl~~~~~slL~D~-~~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L~ 1023 (1188)
+. +.||..++.+++.++..+|..+ +.+++.+.+..++.|. ++.+|..++.+++.++..++..+.. .++|.|.
T Consensus 618 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 697 (876)
T 1qgr_A 618 TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLL 697 (876)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 75 6899999999999999887653 4578999999999998 8999999999999998877765543 5777776
Q ss_pred HhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhcc
Q 001018 1024 QLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDA 1077 (1188)
Q Consensus 1024 ~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~ 1077 (1188)
.....++... ..|...+.++..+...+...+. ..-..++|.|....++.
T Consensus 698 ~~l~~~~~~~--~~~~~~~~~l~~i~~~~g~~~~---~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 698 ENLGNENVHR--SVKPQILSVFGDIALAIGGEFK---KYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHTCTTSCG--GGHHHHHHHHHHHHHHHGGGGG---GGHHHHHHHHHHHHTCC
T ss_pred HHhCCccccH--HhhHHHHHHHHHHHHHhchhHH---HHHHHHHHHHHHHHhcc
Confidence 6655432211 2366777777776665543321 13356778887766543
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=5.1e-16 Score=196.07 Aligned_cols=512 Identities=13% Similarity=0.099 Sum_probs=321.7
Q ss_pred CChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh
Q 001018 495 PDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 495 ~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~ 574 (1188)
.++..|..++..++..+.++++.+|..++..++.||+.-++ ..+.+++|.+.+.+++..+.+|..+...++.+.+..+.
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 46778999999999999999999999999999999998755 56889999999999988899999999999999877765
Q ss_pred hhh-------hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc--hhhhhHHHHHHHhccCCChhHHHHHHHhhHH
Q 001018 575 EIR-------DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT--DKYFKVEDLMFQLVCDPSGVVVETTFKELLP 645 (1188)
Q Consensus 575 e~r-------~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~--d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llp 645 (1188)
... ...++|.|.++..|.++.||.+|++.|..++...+.. .....+++.++.++.|+.+.||..+...| .
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L-~ 240 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL-V 240 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH-H
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-H
Confidence 432 3458899999999999999999999999888665432 12346888888999999999999988776 3
Q ss_pred HHHhcccc-hHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001018 646 AVINWGSK-LDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSV 724 (1188)
Q Consensus 646 ala~~~~~-~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~ 724 (1188)
.++..... ....+..+++.++...++ .+ ..||. .+++.+. .+.+
T Consensus 241 ~l~~~~~~~~~~~l~~l~~~l~~~~~~-------------------~~--~~vr~--~a~e~l~-----~l~~------- 285 (852)
T 4fdd_A 241 MLLEVRMDRLLPHMHNIVEYMLQRTQD-------------------QD--ENVAL--EACEFWL-----TLAE------- 285 (852)
T ss_dssp HHHHHCHHHHGGGHHHHHHHHHHHHTC-------------------SS--HHHHH--HHHHHHH-----HHTT-------
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHccC-------------------Cc--HHHHH--HHHHHHH-----HHhc-------
Confidence 33332111 001112223222211100 00 11221 0111111 0110
Q ss_pred CCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccC--------CC-----------CcHHHHHHHHHHHHH
Q 001018 725 SLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLL--------PE-----------KEDNLRNRITKFLLA 785 (1188)
Q Consensus 725 ~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~--------~D-----------~sWrVR~Aia~~l~~ 785 (1188)
... . |..+.-....++|.+.+..... .| ..|+||.+.+..+..
T Consensus 286 --~~~-------~---------~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 286 --QPI-------C---------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp --STT-------H---------HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred --chh-------H---------HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 000 0 0001112334556665542100 22 789999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHH
Q 001018 786 VSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLR 865 (1188)
Q Consensus 786 La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~ 865 (1188)
++..+|.+ ....++|.+...+.|.... +|.++...+..+.... +. .+-| ++.+++| ++.
T Consensus 348 la~~~~~~-~~~~l~~~l~~~l~~~~~~--~R~aa~~alg~i~~~~--~~-----~~~~-~l~~~l~----------~l~ 406 (852)
T 4fdd_A 348 LANVYRDE-LLPHILPLLKELLFHHEWV--VKESGILVLGAIAEGC--MQ-----GMIP-YLPELIP----------HLI 406 (852)
T ss_dssp HHHHHGGG-GHHHHHHHHHHHHTCSSHH--HHHHHHHHHHHTTTTT--HH-----HHGG-GHHHHHH----------HHH
T ss_pred HHHhccHH-HHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHhcc--hH-----HHHH-HHHHHHH----------HHH
Confidence 99999965 4457889999999876311 1332222111111000 00 0001 1111111 233
Q ss_pred HHHhhcccccccccchhhhHHHHHHhhhc------hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhh--h
Q 001018 866 KLLVEGTMKENHTVKCNAEIVNAVRFLCT------FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKV--T 937 (1188)
Q Consensus 866 rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~------~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~--l 937 (1188)
++..+ .+|.|-.+. +.++..++. ...+...++|.++.++.|+.+.||.+++..|..+++..+... .
T Consensus 407 ~~l~d----~~~~Vr~~a--~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 407 QCLSD----KKALVRSIT--CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHTTC----SSHHHHHHH--HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHcCC----CCHHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 33222 234442222 444433332 245678899999999999999999999999999998887653 3
Q ss_pred hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH----HHHHHHHHHHHH---HhcCCChhHHHHHHHHHHHhcccC
Q 001018 938 SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND----MIVDKIRVQMDA---FLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 938 s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e----~~~ekl~~~~~s---lL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
-..++|.|..+.++.+......+.++++.++...|.. .+.+.+.|.+.. .+.|....+| .++.+++.++..+
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHH
Confidence 3678888888888888888888999999999876643 477788887774 4667777776 7899999998888
Q ss_pred CHHHHH---HHHHHHHHhhc-----------CC-CCC-hhhHHHHHHHHHHHHHHHhhccccCchhhh-hhhHHHHHHHH
Q 001018 1011 TERLRD---YLLSKIFQLSA-----------VP-SSS-SDVMRRRERANAFCESIRALDATELSATSV-RDFLLPAIQNL 1073 (1188)
Q Consensus 1011 ~~~~r~---~IlP~L~~L~~-----------vp-N~~-~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v-~~~ilP~L~~L 1073 (1188)
+..+.. .++|.+..+.. .| ... .+...|......+...++.+... . .+.+ .+.++|.+..+
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~-~-~~~~~~~~~~~~l~~~ 637 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN-I-EQLVARSNILTLMYQC 637 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG-G-HHHHHTCCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh-H-HHHhcCCcHHHHHHHH
Confidence 777654 45665444432 12 110 12223444445555555555422 1 1222 35678888887
Q ss_pred HhccCCCChHHHHHHHHHHhh
Q 001018 1074 LKDADSLDPAHKEALEIIMKD 1094 (1188)
Q Consensus 1074 ~~D~d~l~~~~k~~l~~i~ke 1094 (1188)
++|.. +.-|...-.++.+
T Consensus 638 l~~~~---~~vr~~a~~~l~~ 655 (852)
T 4fdd_A 638 MQDKM---PEVRQSSFALLGD 655 (852)
T ss_dssp TTCSS---HHHHHHHHHHHHH
T ss_pred hCCCC---hhHHHHHHHHHHH
Confidence 76642 4444444444443
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.72 E-value=4.1e-15 Score=194.92 Aligned_cols=509 Identities=10% Similarity=0.083 Sum_probs=315.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHh---CchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 506 TLFNLIKRPDEKQRRIIMDACVTLAKNV---GEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 506 ll~nLiKdddp~vRr~aa~~l~~iA~~l---g~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
.++.-+.++|+.+|++|+..+....+.- -.+.....++|.+++.+.|+.++||..++.+++.++..++++ +...++
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~ 88 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIV 88 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 3444478999999999998887654321 123556789999999899999999999999999999988763 444567
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--------hhhhHHHHHHHhccC-CChhHHHHHHHhhHHHHHhcccc
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTD--------KYFKVEDLMFQLVCD-PSGVVVETTFKELLPAVINWGSK 653 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--------~~~qi~~~f~~Ll~D-~s~~Vr~aa~~~Llpala~~~~~ 653 (1188)
+.+.....|+...||.+++..|+.++..++... ...+++|.++..+.| +...||..|...+.-.+..+...
T Consensus 89 ~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~ 168 (1230)
T 1u6g_C 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL 168 (1230)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH
Confidence 888777788889999999999999999988752 467899999999985 78899998887773333222222
Q ss_pred hHHHHHHHHHHHhhhhccCCCccccchh----hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcc
Q 001018 654 LDHILRVLLSYILSSAQRCPPLSGVEGS----VESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEE 729 (1188)
Q Consensus 654 ~~~ll~~ll~~L~~~v~~lp~~~~v~~~----la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~e 729 (1188)
....+..+++.+++.+.+- ...|+.. +.......+ +. .+..++|.+...+.... +..
T Consensus 169 l~~~~~~ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~-~~---------~~~~~l~~l~~~L~~~~-------~~~ 229 (1230)
T 1u6g_C 169 LVNFHPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCG-NI---------VFVDLIEHLLSELSKND-------SMS 229 (1230)
T ss_dssp CTTTHHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC--------------CTTHHHHHHHHHHHTC-------SSC
T ss_pred HHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcC-HH---------HHHHHHHHHHHHhccCC-------chh
Confidence 2223355666665544321 1223322 111111111 11 23445666666554311 122
Q ss_pred ccc-chhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHH--HHHHHHHHHHHH
Q 001018 730 TVF-PSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSY--LTHIMLPVFMVA 806 (1188)
Q Consensus 730 vrl-~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~--t~~~LlP~fl~l 806 (1188)
++- ....+..+...... .+.-....++|.+.+.. .|..+.||.++...+..++..+|.++ .-..++|.++..
T Consensus 230 ~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l---~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHH---SSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHH
Confidence 222 11111111000000 11123456899999886 78889999999999999999999764 345678888887
Q ss_pred hCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchh-hhHHHHHHHhhcccccccccchhhhH
Q 001018 807 VGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQ-LADYLRKLLVEGTMKENHTVKCNAEI 885 (1188)
Q Consensus 807 L~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~-l~nyL~rLt~~~s~~~~W~v~~~p~l 885 (1188)
+.+++...+ .....|. +..-.+ .... +..+ ...|- . ..+..|.+....
T Consensus 305 l~~d~~~~~----------------~~d~~~~-----~~~~~~-~~~~-~~~~~~~~~~----~--~~d~~~~vR~~A-- 353 (1230)
T 1u6g_C 305 LTYDPNYNY----------------DDEDEDE-----NAMDAD-GGDD-DDQGSDDEYS----D--DDDMSWKVRRAA-- 353 (1230)
T ss_dssp CCCC-----------------------------------------------------------------CTTHHHHHH--
T ss_pred hCCCCCCCC----------------ccccccc-----cccccc-cccc-chhhcccccc----c--ccccCHHHHHHH--
Confidence 764321100 0000000 000000 0000 0000 00110 0 112457763333
Q ss_pred HHHHHhhh-----chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch---------------------hhhhh
Q 001018 886 VNAVRFLC-----TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA---------------------KVTSM 939 (1188)
Q Consensus 886 l~ai~~Lg-----~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~---------------------~~ls~ 939 (1188)
+.++..++ ....+...++|.+.....|+.++||..++..+..+...++. +....
T Consensus 354 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 433 (1230)
T 1u6g_C 354 AKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 433 (1230)
T ss_dssp HHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh
Confidence 44443332 13566778899999999999999999999999988876643 23456
Q ss_pred hhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhcCCCh--hHHHHHHHHHHHhcccCCHH--
Q 001018 940 QVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND--MIVDKIRVQMDAFLEDGSH--EATVAVVRALAVAVPHTTER-- 1013 (1188)
Q Consensus 940 ~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e--~~~ekl~~~~~slL~D~~~--~vR~~vv~al~~l~p~~~~~-- 1013 (1188)
.++|.+.++.+|++|.||.+++.+++.++..++.. ...+++.+.+...+.|++. .++..++..+..++...+++
T Consensus 434 ~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~ 513 (1230)
T 1u6g_C 434 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF 513 (1230)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHH
Confidence 77888888899999999999999999999875431 3568899999999999875 99999999999998877776
Q ss_pred --HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhcc---c-cCchhhhhhhHHHHHHHHH
Q 001018 1014 --LRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDA---T-ELSATSVRDFLLPAIQNLL 1074 (1188)
Q Consensus 1014 --~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~---~-~l~~~~v~~~ilP~L~~L~ 1074 (1188)
+.+.++|.|.....-++. .-|.+...++....+.+.. + .-.-....+.++|.|-..+
T Consensus 514 ~~~l~~llp~L~~~l~d~~~----~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 576 (1230)
T 1u6g_C 514 HPHVQALVPPVVACVGDPFY----KITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRL 576 (1230)
T ss_dssp HHHHTTTHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccch----HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHH
Confidence 333588888876655553 1133444445555544432 0 0011123456778766655
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.71 E-value=2.4e-14 Score=179.31 Aligned_cols=520 Identities=13% Similarity=0.135 Sum_probs=312.2
Q ss_pred hhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcC--chhHHHHHHHHHHHHHh
Q 001018 498 STRDSLTHTLFNLIKRP--DEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHM--YEERRLLVAQSCGELAE 570 (1188)
Q Consensus 498 ~~R~~Ll~ll~nLiKdd--dp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd--~dEVRlLvAescg~La~ 570 (1188)
..+.+++..++..+.++ ++.+|..++..+..++..+++ ......++|.+...+.|+ .++||..++.+++.++.
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34677999999999999 999999999999999988765 334456788888877776 58999999999999988
Q ss_pred hhChhhh----hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch--hhh-hHHHHHHHhccCCChhHHHHHHHhh
Q 001018 571 FVRPEIR----DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD--KYF-KVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 571 ~vg~e~r----~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~-qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+++.... ...+++.+.++..|..+.||.++.+.|..++...++.- .+. .+++.+...+.|.++.||..+...+
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 8764322 23578888888899999999999999999998766431 234 7888888888999999999887765
Q ss_pred HHHHHhccc---------------------c-hHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHH-
Q 001018 644 LPAVINWGS---------------------K-LDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVL- 700 (1188)
Q Consensus 644 lpala~~~~---------------------~-~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~- 700 (1188)
..+++... . ....+..+++.++..+.....+ .++..|++|..
T Consensus 284 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d--------------~~~~~~~~r~~a 348 (876)
T 1qgr_A 284 -SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN--------------DDDDDWNPCKAA 348 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS--------------CCTTCCCHHHHH
T ss_pred -HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc--------------ccccccHHHHHH
Confidence 44443210 0 0011123333332221111000 01234555530
Q ss_pred ---HH---------HHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhhhhhhcCCCCccc---hhhHHhhhhHHHHHh
Q 001018 701 ---LR---------MMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLLELYAGGHIEWPA---FEWMHVDCFPGLIQL 764 (1188)
Q Consensus 701 ---l~---------~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll~l~~~~~~~w~~---~~wl~~~lLP~l~~L 764 (1188)
+. .+..++|.+...+. +.+..+|.. ...+..+. ++.+ +......++|.+...
T Consensus 349 ~~~l~~l~~~~~~~~~~~~l~~l~~~l~--------~~~~~~r~~a~~~l~~i~----~~~~~~~~~~~~~~~l~~l~~~ 416 (876)
T 1qgr_A 349 GVCLMLLATCCEDDIVPHVLPFIKEHIK--------NPDWRYRDAAVMAFGCIL----EGPEPSQLKPLVIQAMPTLIEL 416 (876)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHTT--------CSSHHHHHHHHHHHHHTS----SSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcHhhHHHHHHHHHHHcc--------CCChHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHH
Confidence 00 22333443332211 123334432 11121111 1111 223456688888887
Q ss_pred hccCCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHh------
Q 001018 765 ACLLPEKEDNLRNRITKFLLAVSKQFGDS----YLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVG------ 834 (1188)
Q Consensus 765 A~~~~D~sWrVR~Aia~~l~~La~~fG~e----~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig------ 834 (1188)
. .|.+++||.+++..+..+++.++.. ..-..++|.++..+.|+..+ |.++...+..+.. ..+
T Consensus 417 l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v---~~~a~~al~~l~~--~~~~~~~~~ 488 (876)
T 1qgr_A 417 M---KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV---ASNVCWAFSSLAE--AAYEAADVA 488 (876)
T ss_dssp H---TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHH---HHHHHHHHHHHHH--HHHHTTSCT
T ss_pred h---CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHH--Hhhhccccc
Confidence 5 8999999999999999999998753 23456788888999885322 3222111111100 000
Q ss_pred --------hhh--hhhchhhHHhhhhcCCCC-cchhh-------------------hHHHHHHHhhcccc---------c
Q 001018 835 --------ERL--ATMGVLPLLLAGVLGAPS-KHDQL-------------------ADYLRKLLVEGTMK---------E 875 (1188)
Q Consensus 835 --------~~l--~~~~lLP~il~gVL~~~~-~~~~l-------------------~nyL~rLt~~~s~~---------~ 875 (1188)
..+ .-..++|.++. .+.... +...+ ..|+..++..+-.. .
T Consensus 489 ~~~~~~~~~~l~~~~~~il~~L~~-~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (876)
T 1qgr_A 489 DDQEEPATYCLSSSFELIVQKLLE-TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESH 567 (876)
T ss_dssp TSCCCCCCCSSTTTHHHHHHHHHH-HTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred cccccccchhhhHhHHHHHHHHHH-HHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 00112232221 111110 00001 11111111100000 0
Q ss_pred ccccch---hhh----HHHHHHhhhc------hhhHHHhHHHHHHHhhcCCC--hhHHHHHHHHHHHHHhhhchhhh--h
Q 001018 876 NHTVKC---NAE----IVNAVRFLCT------FEEHHTMVFNILWEMVVSSN--IDMKINAANLLKVIVPYINAKVT--S 938 (1188)
Q Consensus 876 ~W~v~~---~p~----ll~ai~~Lg~------~e~~~~~iLpiL~~lv~D~~--pnVR~naak~L~~L~~~ig~~~l--s 938 (1188)
.|..+. .++ ++.++..++. ...+...++|.+..++.++. +.||..++..+..++..+|.... -
T Consensus 568 ~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 647 (876)
T 1qgr_A 568 IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM 647 (876)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 000000 011 1222222221 12345789999999998875 58999999999999988776533 2
Q ss_pred hhhhhHHHhhccCC-CcchHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHhcccCCHH
Q 001018 939 MQVLPALVTLGSDQ-NLNVKYASIDAFGAVAQHFKND--MIVDKIRVQMDAFLED--GSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 939 ~~VlPaLv~LasD~-d~dVR~aaieAl~~LA~~l~~e--~~~ekl~~~~~slL~D--~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
..++|.|.....|. ++.||.+++.+++.++..+|.. .+.+.+.+.+...+.+ .+..+|..++.+++.++..+++.
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh
Confidence 67889999988887 8999999999999999988754 3457788888888876 45689999999999998777776
Q ss_pred HH---HHHHHHHHHhhcCCC-CC-h-----hhHHHHHHHHHHHHHHHhhc
Q 001018 1014 LR---DYLLSKIFQLSAVPS-SS-S-----DVMRRRERANAFCESIRALD 1053 (1188)
Q Consensus 1014 ~r---~~IlP~L~~L~~vpN-~~-~-----~~~~R~~vAk~l~~a~~aL~ 1053 (1188)
+. ..++|.|........ .. . ...-|..+.+++..++..+.
T Consensus 728 ~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 728 FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 54 368888877665331 10 0 01236566666666666554
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=1.2e-13 Score=159.71 Aligned_cols=350 Identities=13% Similarity=0.082 Sum_probs=231.7
Q ss_pred cCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC--chhHHHHHHHHHHHHHh
Q 001018 493 RHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM--YEERRLLVAQSCGELAE 570 (1188)
Q Consensus 493 ~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd--~dEVRlLvAescg~La~ 570 (1188)
.+.++..|..++..+.+.+.++++.+ +.++..++.||...+++..+.+++|.+.+.+++. .+.+|..+...++.+..
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999 9999999999999988777899999999988887 88999999999999987
Q ss_pred hhCh---hhhhhhhHHHHHHhhcCC--cHHHHHHHHHHHHhhcccCCCchh---h-hhHHHHHHHhccCCChhHHHHHHH
Q 001018 571 FVRP---EIRDSLILSIVQQLVEDS--ATVVREAAARNLALLLPLFPNTDK---Y-FKVEDLMFQLVCDPSGVVVETTFK 641 (1188)
Q Consensus 571 ~vg~---e~r~slLL~~LqqL~eD~--e~~VR~aAAksL~~l~~~l~~~d~---~-~qi~~~f~~Ll~D~s~~Vr~aa~~ 641 (1188)
...+ ..+...+++.+.+++.|. ++.||.+|++.+..++..+.+... . ..+.+.+..++.|+...||..++.
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~ 239 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 5533 233455889999988888 799999999999988765432110 0 112333333444444444443332
Q ss_pred hhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001018 642 ELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPF 721 (1188)
Q Consensus 642 ~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf 721 (1188)
.| ..+ ... .|
T Consensus 240 ~l-------------------------------------------------------------~~l----~~~----~~- 249 (462)
T 1ibr_B 240 NL-------------------------------------------------------------VKI----MSL----YY- 249 (462)
T ss_dssp HH-------------------------------------------------------------HHH----HHH----CG-
T ss_pred HH-------------------------------------------------------------HHH----HHH----HH-
Confidence 22 111 000 00
Q ss_pred CCCCCCcccccchhhhhhhhcCCCCccchhhHHh-hhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 001018 722 SSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHV-DCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIML 800 (1188)
Q Consensus 722 ~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~-~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~Ll 800 (1188)
..+. . ... .++|.+.... .|....||..+.+++..+|+.. + .+
T Consensus 250 --------~~~~----~--------------~~~~~l~~~~~~~~---~~~~~~v~~~a~~~l~~~~~~~---~---~~- 293 (462)
T 1ibr_B 250 --------QYME----T--------------YMGPALFAITIEAM---KSDIDEVALQGIEFWSNVCDEE---M---DL- 293 (462)
T ss_dssp --------GGCT----T--------------TTTTTHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHH---H---HH-
T ss_pred --------HHHH----H--------------HHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHHHHHH---H---HH-
Confidence 0000 0 011 3333333332 5667789999999888888653 1 00
Q ss_pred HHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccc
Q 001018 801 PVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVK 880 (1188)
Q Consensus 801 P~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~ 880 (1188)
.. .-.|.... +. ..+... . .++
T Consensus 294 ~~---~~~~~~~~---~~---~~~~~~--------------------------~-------~~~---------------- 315 (462)
T 1ibr_B 294 AI---EASEAAEQ---GR---PPEHTS--------------------------K-------FYA---------------- 315 (462)
T ss_dssp HH---HHCCTTCS---SS---CSSCCC--------------------------C-------CHH----------------
T ss_pred HH---hccccccc---CC---Cccchh--------------------------H-------HHH----------------
Confidence 01 11111100 00 000000 0 000
Q ss_pred hhhhHHHHHHhhhchhhHHHhHHHHHHHhh-------cCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCC
Q 001018 881 CNAEIVNAVRFLCTFEEHHTMVFNILWEMV-------VSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQN 953 (1188)
Q Consensus 881 ~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv-------~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d 953 (1188)
+.+...++|.+..++ .|..+.+|..++..|..++..+| +.+...++|.+..+.+|++
T Consensus 316 ---------------~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 316 ---------------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPD 379 (462)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSS
T ss_pred ---------------HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCC
Confidence 001122334443333 24567899999999999999999 5666789999999999999
Q ss_pred cchHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHH-----HHHHHHHHH
Q 001018 954 LNVKYASIDAFGAVAQHFKND---MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERL-----RDYLLSKIF 1023 (1188)
Q Consensus 954 ~dVR~aaieAl~~LA~~l~~e---~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~-----r~~IlP~L~ 1023 (1188)
|+||.+++.+++.++..+..+ .....+.|.+...+.|+++.+|.+++.++++++..+++.+ ...++|.|.
T Consensus 380 ~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 999999999999999755432 2346789999999999999999999999999987776533 334555444
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.42 E-value=1.8e-10 Score=133.01 Aligned_cols=348 Identities=10% Similarity=0.066 Sum_probs=230.3
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhC---h
Q 001018 502 SLTHTLFNLIKRP-DEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVR---P 574 (1188)
Q Consensus 502 ~Ll~ll~nLiKdd-dp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg---~ 574 (1188)
.++..|..+++++ ++.+|..++..+..++..-.. .-....++|.+.+++.+..+++|..++..++.++..-. .
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6788888899988 899999999999998862211 12245699999999999999999999999999986421 1
Q ss_pred hhhhhhhHHHHHHhhc-CCcHHHHHHHHHHHHhhcccC-CC--chhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhc
Q 001018 575 EIRDSLILSIVQQLVE-DSATVVREAAARNLALLLPLF-PN--TDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINW 650 (1188)
Q Consensus 575 e~r~slLL~~LqqL~e-D~e~~VR~aAAksL~~l~~~l-~~--~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~ 650 (1188)
.....-+++.|..+.. +..+.||..++..|..++..- +. ......+++.+..++++....|+..++..+ ..++.
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L-~~l~~- 221 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL-SYLSD- 221 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHH-HHHTS-
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHH-HHHHC-
Confidence 1122236888888777 589999999999999999654 22 223467888888888888877777664333 11110
Q ss_pred ccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccc
Q 001018 651 GSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEET 730 (1188)
Q Consensus 651 ~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ev 730 (1188)
... . .. ..+
T Consensus 222 --~~~-------------------------------------~---------~~--------~~~--------------- 230 (450)
T 2jdq_A 222 --GPN-------------------------------------D---------KI--------QAV--------------- 230 (450)
T ss_dssp --SSH-------------------------------------H---------HH--------HHH---------------
T ss_pred --CCc-------------------------------------H---------HH--------HHH---------------
Confidence 000 0 00 000
Q ss_pred ccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHHHHHHHHHHh
Q 001018 731 VFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDS---YLTHIMLPVFMVAV 807 (1188)
Q Consensus 731 rl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e---~t~~~LlP~fl~lL 807 (1188)
....++|.++++. .+.+|.||..++..+..++...+.. .....++|.++.+|
T Consensus 231 ----------------------~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 231 ----------------------IDAGVCRRLVELL---MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp ----------------------HHTTTHHHHHHHT---TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred ----------------------HHcCcHHHHHHHH---CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence 1122455566654 6778899999999998887643211 12224677777777
Q ss_pred CCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHH
Q 001018 808 GDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVN 887 (1188)
Q Consensus 808 ~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ 887 (1188)
.+.... + | ..+ ...|..++. +.+ .
T Consensus 286 ~~~~~~-v-r-------------~~a---------------------------~~~L~~l~~-----------~~~---~ 309 (450)
T 2jdq_A 286 SSPKES-I-K-------------KEA---------------------------CWTISNITA-----------GNR---A 309 (450)
T ss_dssp TCSSHH-H-H-------------HHH---------------------------HHHHHHHTT-----------SCH---H
T ss_pred cCCCHH-H-H-------------HHH---------------------------HHHHHHHHc-----------CCH---H
Confidence 663210 0 0 000 001111111 000 0
Q ss_pred HHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhccCCCcchHHHHHHH
Q 001018 888 AVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLGSDQNLNVKYASIDA 963 (1188)
Q Consensus 888 ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~LasD~d~dVR~aaieA 963 (1188)
.+. ......++|.|.+++.|+.+.||.+++..|..++...+. ..+...++|.|..+.++++++||..++.+
T Consensus 310 ~~~-----~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 384 (450)
T 2jdq_A 310 QIQ-----TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG 384 (450)
T ss_dssp HHH-----HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred HHH-----HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 000 111246889999999999999999999999999765332 24567899999999999999999999999
Q ss_pred HHHHHHhhchH---------HHHHHH-----HHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 001018 964 FGAVAQHFKND---------MIVDKI-----RVQMDAFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 964 l~~LA~~l~~e---------~~~ekl-----~~~~~slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
|..++...... .+.+.+ .+.+..++.++++.++..++..+..+.+
T Consensus 385 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99998754321 122223 3556677788888888888888877654
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.42 E-value=2.4e-11 Score=145.18 Aligned_cols=388 Identities=11% Similarity=0.050 Sum_probs=245.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC-c---hhhHhhHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhhC---hh
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVG-E---MRTEMELLPQCWEQINHM-YEERRLLVAQSCGELAEFVR---PE 575 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg-~---ert~~ELLP~l~eli~Dd-~dEVRlLvAescg~La~~vg---~e 575 (1188)
+..|+..++++++.+|+.++..+..++..-+ + ......++|.+.+++.+. .+++|..++..++.++..-. ..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5566677788899999998888887765322 1 234567899999988876 89999999999999886321 11
Q ss_pred hhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc---hhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc-
Q 001018 576 IRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT---DKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG- 651 (1188)
Q Consensus 576 ~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~---d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~- 651 (1188)
....-.+|.|.+++.+.++.||+.|+..|..++..-+.. .....+++.++.++.+....|+..++..| ..++...
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L-~~L~~~~~ 247 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL-SNLCRGKK 247 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHH-HHHHCCSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH-HHHhCCCC
Confidence 222346899999888999999999999999998643211 11235788999999998889998886665 4444321
Q ss_pred cchH-HHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccc
Q 001018 652 SKLD-HILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEET 730 (1188)
Q Consensus 652 ~~~~-~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ev 730 (1188)
.... .....+++. +...+. +.+..+
T Consensus 248 ~~~~~~~~~~~l~~----------------------------------------------L~~lL~--------~~d~~v 273 (530)
T 1wa5_B 248 PQPDWSVVSQALPT----------------------------------------------LAKLIY--------SMDTET 273 (530)
T ss_dssp SCCCHHHHGGGHHH----------------------------------------------HHHHTT--------CCCHHH
T ss_pred CCCcHHHHHhHHHH----------------------------------------------HHHHHc--------CCCHHH
Confidence 1110 111111222 222111 001111
Q ss_pred ccc-hhhhhhhhcCCCCccchhh-HHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHH
Q 001018 731 VFP-SSLLELYAGGHIEWPAFEW-MHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQF---GDSYLTHIMLPVFMV 805 (1188)
Q Consensus 731 rl~-~~ll~l~~~~~~~w~~~~w-l~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f---G~e~t~~~LlP~fl~ 805 (1188)
+.. ...+..+..... ..... +...++|.++++. .+.+|.||..++..+..++..- ...+....++|.++.
T Consensus 274 ~~~a~~~L~~L~~~~~--~~~~~~~~~~~v~~Lv~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 274 LVDACWAISYLSDGPQ--EAIQAVIDVRIPKRLVELL---SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp HHHHHHHHHHHHSSCH--HHHHHHHHTTCHHHHHHGG---GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCH--HHHHHHHhcCcHHHHHHHH---CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 110 000000000000 00111 2235789999986 7889999999999999998532 223334467888888
Q ss_pred HhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhH
Q 001018 806 AVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEI 885 (1188)
Q Consensus 806 lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~l 885 (1188)
+|.+.... + | ..+ ...|..++.. .+
T Consensus 349 lL~~~~~~-v-r-------------~~A---------------------------~~aL~~l~~~-----------~~-- 373 (530)
T 1wa5_B 349 LLSSPKEN-I-K-------------KEA---------------------------CWTISNITAG-----------NT-- 373 (530)
T ss_dssp HTTCSCHH-H-H-------------HHH---------------------------HHHHHHHTTS-----------CH--
T ss_pred HHcCCCHH-H-H-------------HHH---------------------------HHHHHHHHcC-----------CH--
Confidence 88764210 0 0 000 0011111110 00
Q ss_pred HHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch------hhhhhhhhhHHHhhccCCCcchHHH
Q 001018 886 VNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA------KVTSMQVLPALVTLGSDQNLNVKYA 959 (1188)
Q Consensus 886 l~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~------~~ls~~VlPaLv~LasD~d~dVR~a 959 (1188)
..+. ..+...++|.|..++.++.+.||..++..|..++...+. ..+...++|.|..+..+++..||..
T Consensus 374 -~~~~-----~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 374 -EQIQ-----AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp -HHHH-----HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred -HHHH-----HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 0000 011235788888888999999999999999999765433 3456779999999999999999999
Q ss_pred HHHHHHHHHHhhchH---------HHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH
Q 001018 960 SIDAFGAVAQHFKND---------MIVD-----KIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE 1012 (1188)
Q Consensus 960 aieAl~~LA~~l~~e---------~~~e-----kl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~ 1012 (1188)
++.+|..++...... .+.. .....+..++.++++.++..+...+..+.+.-+.
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 999999888754321 1111 1355677788899999999999999988876544
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.39 E-value=1.9e-10 Score=132.85 Aligned_cols=378 Identities=12% Similarity=0.063 Sum_probs=225.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhc--CchhHHHHHHHHHHHHHh----------
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINH--MYEERRLLVAQSCGELAE---------- 570 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~D--d~dEVRlLvAescg~La~---------- 570 (1188)
|..+|.+ +.+|+..+|+.|.+.+..+.+. .....++.+.+.+.+ ..+++|.+++-.+..+..
T Consensus 3 l~~~L~~-~~s~d~~~r~~Ae~~L~~~~~~-----~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 3 LITILEK-TVSPDRLELEAAQKFLERAAVE-----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHHH-TTCSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHhh-----ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 3445555 4589999999999999886652 112344445444433 368999999998888752
Q ss_pred -----hhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCC--ChhHHHHHHHhh
Q 001018 571 -----FVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDP--SGVVVETTFKEL 643 (1188)
Q Consensus 571 -----~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~--s~~Vr~aa~~~L 643 (1188)
.++.+.+. .|...+.+++.++.+.| .+++..++.|+....+.....++++.+...+.+. ++.+|..++..|
T Consensus 77 ~~~~~~l~~~~~~-~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 77 QQRWLAIDANARR-EVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HHHHHTSCHHHHH-HHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HhhhhcCCHHHHH-HHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 24444443 34555556667778888 9999999999877433234567999999999998 889998887766
Q ss_pred HHHHHh-cccc-hHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhh-hhhHHH-HHHHHHHHHHHHHHHHhhhC
Q 001018 644 LPAVIN-WGSK-LDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERE-RWNLEV-LLRMMAELLPFMQKNAIETC 719 (1188)
Q Consensus 644 lpala~-~~~~-~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~-sWrV~~-~l~~l~~LLP~i~~~l~~~~ 719 (1188)
-.+++ +... .......+++.+... +..+. ++.||. .++++..+++
T Consensus 155 -~~l~~~~~~~~~~~~~~~ll~~l~~~--------------------l~~~~~~~~vr~~a~~~l~~~~~---------- 203 (462)
T 1ibr_B 155 -GYICQDIDPEQLQDKSNEILTAIIQG--------------------MRKEEPSNNVKLAATNALLNSLE---------- 203 (462)
T ss_dssp -HHHHHHSCGGGTGGGHHHHHHHHHHH--------------------HSTTCCCHHHHHHHHHHHHHHTT----------
T ss_pred -HHHHHhCCchhhHhHHHHHHHHHHHH--------------------hCCCCCCHHHHHHHHHHHHHHHH----------
Confidence 22222 2111 111112222222111 11110 122222 0111111111
Q ss_pred CCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHH--HH
Q 001018 720 PFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYL--TH 797 (1188)
Q Consensus 720 pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t--~~ 797 (1188)
| +......|. ..+.++|.+.++. .+..+.||.++++.|..++..++..+. -.
T Consensus 204 -~------------------~~~~~~~~~----~~~~l~~~l~~~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 257 (462)
T 1ibr_B 204 -F------------------TKANFDKES----ERHFIMQVVCEAT---QCPDTRVRVAALQNLVKIMSLYYQYMETYMG 257 (462)
T ss_dssp -T------------------THHHHTSHH----HHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT
T ss_pred -H------------------HHHhhhhhH----HHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000010 1233566666664 778888998888888888877653211 01
Q ss_pred -HHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccc
Q 001018 798 -IMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKEN 876 (1188)
Q Consensus 798 -~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~ 876 (1188)
.++|.++..++|
T Consensus 258 ~~l~~~~~~~~~~------------------------------------------------------------------- 270 (462)
T 1ibr_B 258 PALFAITIEAMKS------------------------------------------------------------------- 270 (462)
T ss_dssp TTHHHHHHHHHHC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcC-------------------------------------------------------------------
Confidence 333444333333
Q ss_pred cccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--------------------chhh
Q 001018 877 HTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYI--------------------NAKV 936 (1188)
Q Consensus 877 W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~i--------------------g~~~ 936 (1188)
..+.||..++..+..+++.. ....
T Consensus 271 ------------------------------------~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 271 ------------------------------------DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp ------------------------------------SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred ------------------------------------CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 22233333222222222210 0001
Q ss_pred ---hhhhhhhHHHhhcc-------CCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 001018 937 ---TSMQVLPALVTLGS-------DQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVA 1006 (1188)
Q Consensus 937 ---ls~~VlPaLv~Las-------D~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l 1006 (1188)
....++|.+..+.. |.+|.+|.++..+++.++..+| +.+...+.+.+...+.|++..+|.+++.+++.+
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 12557777765442 4579999999999999999999 466688999999999999999999999999999
Q ss_pred cccCCHHH----HHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhc
Q 001018 1007 VPHTTERL----RDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALD 1053 (1188)
Q Consensus 1007 ~p~~~~~~----r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~ 1053 (1188)
+..++++. ...++|.|..+..-++. .-|...+.++......+.
T Consensus 394 ~~~~~~~~~~~~l~~~~~~l~~~l~d~~~----~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSV----VVRDTAAWTVGRICELLP 440 (462)
T ss_dssp SSSSCTTTTCTTTTTHHHHHHHGGGCSCH----HHHHHHHHHHHHHHHHGG
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHhcc
Confidence 98776432 23688988888764442 127778777777666554
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.39 E-value=1.1e-10 Score=134.74 Aligned_cols=347 Identities=11% Similarity=0.027 Sum_probs=222.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-Cc---hhhHh-hHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhhCh---
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNV-GE---MRTEM-ELLPQCWEQINHM-YEERRLLVAQSCGELAEFVRP--- 574 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~l-g~---ert~~-ELLP~l~eli~Dd-~dEVRlLvAescg~La~~vg~--- 574 (1188)
+..+...++++++.+|..++..+..++..- .+ ..... .++|.+.+.+.++ .+++|..++..++.++..-..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 667778889999999999999999886522 22 12233 6899998888777 789999999999988753211
Q ss_pred hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch---hhhhHHHHHHHhccC-CChhHHHHHHHhhHHHHHhc
Q 001018 575 EIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD---KYFKVEDLMFQLVCD-PSGVVVETTFKELLPAVINW 650 (1188)
Q Consensus 575 e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d---~~~qi~~~f~~Ll~D-~s~~Vr~aa~~~Llpala~~ 650 (1188)
.....-++|.|.+++.+..+.||+.|+..|..++...+..- ....+++.+..++.+ .+..|+..++..+ ..++..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L-~~l~~~ 180 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL-SNLCRG 180 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH-HHHHCC
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH-HHHhCC
Confidence 11223479999999999999999999999999987532110 112356666666664 5666666664333 111110
Q ss_pred ccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccc
Q 001018 651 GSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEET 730 (1188)
Q Consensus 651 ~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ev 730 (1188)
.. + ..
T Consensus 181 ~~--------------------~-------------------------------------------------------~~ 185 (450)
T 2jdq_A 181 KS--------------------P-------------------------------------------------------PP 185 (450)
T ss_dssp SS--------------------S-------------------------------------------------------CC
T ss_pred CC--------------------C-------------------------------------------------------CC
Confidence 00 0 00
Q ss_pred ccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHHHHHHHHHHh
Q 001018 731 VFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGD---SYLTHIMLPVFMVAV 807 (1188)
Q Consensus 731 rl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~---e~t~~~LlP~fl~lL 807 (1188)
.. . +...++|.+.++. .+..+.||..++..+..+|..... ......++|.++.++
T Consensus 186 ~~------------------~-~~~~~l~~L~~~l---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 243 (450)
T 2jdq_A 186 EF------------------A-KVSPCLNVLSWLL---FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243 (450)
T ss_dssp CG------------------G-GTGGGHHHHHHHT---TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT
T ss_pred CH------------------H-HHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH
Confidence 00 0 1123445555543 455566777777777666643211 112234667777777
Q ss_pred CCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHH
Q 001018 808 GDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVN 887 (1188)
Q Consensus 808 ~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ 887 (1188)
.+.... ++..+ ...|..+... .+....
T Consensus 244 ~~~~~~---------------v~~~a---------------------------~~~L~~l~~~-----------~~~~~~ 270 (450)
T 2jdq_A 244 MHNDYK---------------VVSPA---------------------------LRAVGNIVTG-----------DDIQTQ 270 (450)
T ss_dssp TCSCHH---------------HHHHH---------------------------HHHHHHHTTS-----------CHHHHH
T ss_pred CCCchh---------------HHHHH---------------------------HHHHHHHhhC-----------ChHHHH
Confidence 653210 00000 0011111110 000000
Q ss_pred HHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc---hhhhhhhhhhHHHhhccCCCcchHHHHHHHH
Q 001018 888 AVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN---AKVTSMQVLPALVTLGSDQNLNVKYASIDAF 964 (1188)
Q Consensus 888 ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig---~~~ls~~VlPaLv~LasD~d~dVR~aaieAl 964 (1188)
......++|.|..++.++.+.||..++..|..++..-. ...+...++|.|+.+.+|++.+||..+..++
T Consensus 271 --------~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L 342 (450)
T 2jdq_A 271 --------VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342 (450)
T ss_dssp --------HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred --------HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01113588999999999999999999999999985321 1344568999999999999999999999999
Q ss_pred HHHHHhhchH----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 965 GAVAQHFKND----MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 965 ~~LA~~l~~e----~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
+.++....++ .+...+.+.+..++.++++.++..++.++..++..
T Consensus 343 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9998754333 23346888999999999999999999999988753
No 16
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.25 E-value=3.2e-09 Score=129.49 Aligned_cols=454 Identities=11% Similarity=0.120 Sum_probs=263.8
Q ss_pred hHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHH
Q 001018 479 HREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERR 558 (1188)
Q Consensus 479 ~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVR 558 (1188)
+++.+..++..-+..+.-+ .+..-..+++.++++.+|+++.-++..+++.- + ...-.+++.+..-.+|..+.+|
T Consensus 30 k~~~~~kli~~~~~G~d~~----~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~-e~~~l~~n~l~kdL~~~n~~ir 103 (591)
T 2vgl_B 30 RKEAVKKVIAAMTVGKDVS----SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-P-DMAIMAVNSFVKDCEDPNPLIR 103 (591)
T ss_dssp HHHHHHHHHHHHHTTCCCG----GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-H-HHHHTTHHHHGGGSSSSSHHHH
T ss_pred HHHHHHHHHHHHHCCCChH----HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-c-hHHHHHHHHHHHHcCCCCHHHH
Confidence 3444555554433334322 23333445889999999999999988887731 2 2223345666666778889999
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHH
Q 001018 559 LLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVET 638 (1188)
Q Consensus 559 lLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~a 638 (1188)
-++...++.+. .+.-...++|.+.+++.|..+.||.+|+..+..++...++......+.+.+..++.|+.+.|+.+
T Consensus 104 ~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 179 (591)
T 2vgl_B 104 ALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 179 (591)
T ss_dssp HHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHH
T ss_pred HHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHH
Confidence 88877776653 33344556888999999999999999999999999866554333468899999999999999999
Q ss_pred HHHhhHHHHHhcccch--HHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 001018 639 TFKELLPAVINWGSKL--DHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAI 716 (1188)
Q Consensus 639 a~~~Llpala~~~~~~--~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~ 716 (1188)
|+..| -.++.-.... -.+....+..|+..+ .+...|--..++++ +.
T Consensus 180 A~~aL-~~i~~~~~~~~~~~l~~~~~~~Ll~~l--------------------~~~~~~~q~~il~~-----------l~ 227 (591)
T 2vgl_B 180 AVAAL-SEISESHPNSNLLDLNPQNINKLLTAL--------------------NECTEWGQIFILDC-----------LS 227 (591)
T ss_dssp HHHHH-HHHTTSCCSCCSCCCHHHHHHHHHHHH--------------------HHCCHHHHHHHHHH-----------HH
T ss_pred HHHHH-HHHHhhCCCccchhccHHHHHHHHHcC--------------------CCCCchHHHHHHHH-----------HH
Confidence 97776 3333211100 011112222222211 11122321111111 11
Q ss_pred hhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh--CHHH
Q 001018 717 ETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQF--GDSY 794 (1188)
Q Consensus 717 ~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f--G~e~ 794 (1188)
..+|- + .-....+++.+..+ +.+.++.||++++..+..++..+ +.+.
T Consensus 228 ~l~~~-----~-----------------------~~~~~~~l~~l~~~---l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 228 NYNPK-----D-----------------------DREAQSICERVTPR---LSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp TSCCC-----S-----------------------HHHHHHHHHHHTTC---SCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred HhCCC-----C-----------------------hHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 11110 0 00223456666555 48889999999999998877543 2222
Q ss_pred HH---HHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhc
Q 001018 795 LT---HIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEG 871 (1188)
Q Consensus 795 t~---~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~ 871 (1188)
.. ..+.|.++.++..+.. ++...
T Consensus 277 ~~~~~~~~~~~L~~L~~~d~~---------------------------------------------------vr~~a--- 302 (591)
T 2vgl_B 277 YNMLLKKLAPPLVTLLSGEPE---------------------------------------------------VQYVA--- 302 (591)
T ss_dssp HHHHHHHTHHHHHHHTTSCHH---------------------------------------------------HHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCcc---------------------------------------------------HHHHH---
Confidence 22 2333443333321110 00000
Q ss_pred ccccccccchhhhHHHHHHhhhc--hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhc
Q 001018 872 TMKENHTVKCNAEIVNAVRFLCT--FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLG 949 (1188)
Q Consensus 872 s~~~~W~v~~~p~ll~ai~~Lg~--~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~La 949 (1188)
+.++..++. .+....++- .+.....|+ +.||..++..|..++.. +. -..|++.|.+..
T Consensus 303 --------------L~~l~~i~~~~p~~~~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~---~n-v~~iv~~L~~~l 362 (591)
T 2vgl_B 303 --------------LRNINLIVQKRPEILKQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQ---AN-IAQVLAELKEYA 362 (591)
T ss_dssp --------------HHHHHHHHHHCCSTTTTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCS---ST-HHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHhChHHHHHHHH-hheeccCCh-HHHHHHHHHHHHHHCCh---hh-HHHHHHHHHHHH
Confidence 122211111 122222222 233334566 99999998887776533 22 246888999999
Q ss_pred cCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcCC
Q 001018 950 SDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVP 1029 (1188)
Q Consensus 950 sD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~vp 1029 (1188)
+|.|+++|..++.+|+.++..+.. ..+.+.+.+..++.|....++-.++.++..++...+ ..++++++.|......-
T Consensus 363 ~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p-~~~~~~v~~L~~~l~~~ 439 (591)
T 2vgl_B 363 TEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP-NKYESIIATLCENLDSL 439 (591)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC-SSCCTTHHHHHHTTTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHhc
Confidence 999999999999999999987643 346678888899999988888888888888875543 22345666665544311
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccCCCChHHH-HHHHHHHhhcc
Q 001018 1030 SSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHK-EALEIIMKDRS 1096 (1188)
Q Consensus 1030 N~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~k-~~l~~i~ke~~ 1096 (1188)
.. +. -|..+ +.++.-. +...++ .-..|+.+.+.....++.-| ..+.+++|=+.
T Consensus 440 ~~-~~--~~~~~----~wilGey--~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 440 DE-PD--ARAAM----IWIVGEY--AERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp CS-HH--HHHHH----HHHHHTT--CTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cC-HH--HHHHH----HHHHHcc--cccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 11 11 13233 3433322 211111 23445566654444454444 45677776655
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.22 E-value=2.6e-09 Score=127.29 Aligned_cols=367 Identities=12% Similarity=0.053 Sum_probs=230.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC-c---hhhHhhHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhhhChh---
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVG-E---MRTEMELLPQCWEQINHMY-EERRLLVAQSCGELAEFVRPE--- 575 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg-~---ert~~ELLP~l~eli~Dd~-dEVRlLvAescg~La~~vg~e--- 575 (1188)
+..+..+++++++.+|..|+..+..++..-. + ......++|.+.+++.+.. +++|..++.+++.++..- ++
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTK 154 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHH
Confidence 5566667788999999999999988876443 1 2345668999998887765 899999999999988621 11
Q ss_pred -hhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc-hh--hhhHHHHHHHhc-cCCChhHHHHHHHhhHHHHHhc
Q 001018 576 -IRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT-DK--YFKVEDLMFQLV-CDPSGVVVETTFKELLPAVINW 650 (1188)
Q Consensus 576 -~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~-d~--~~qi~~~f~~Ll-~D~s~~Vr~aa~~~Llpala~~ 650 (1188)
....-.+|.|..++.+..+.||+.|+..|..|+..-+.. +. ...+++.++.++ .+....|+..++..|
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L------- 227 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL------- 227 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH-------
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH-------
Confidence 122236899999999999999999999999998532110 00 001233333333 233333333322111
Q ss_pred ccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCccc
Q 001018 651 GSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEET 730 (1188)
Q Consensus 651 ~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ev 730 (1188)
.. +....| ..
T Consensus 228 -------------------------------------------------------------~~-L~~~~~--------~~ 237 (528)
T 4b8j_A 228 -------------------------------------------------------------SN-FCRGKP--------QP 237 (528)
T ss_dssp -------------------------------------------------------------HH-HHCSSS--------CC
T ss_pred -------------------------------------------------------------HH-HHcCCC--------CC
Confidence 00 110000 00
Q ss_pred ccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHHHHHHHHHHh
Q 001018 731 VFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGD---SYLTHIMLPVFMVAV 807 (1188)
Q Consensus 731 rl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~---e~t~~~LlP~fl~lL 807 (1188)
. ......++|.++.+. .+..+.||..++..+..|+..-.. ......++|.++.+|
T Consensus 238 ~-------------------~~~~~~~l~~L~~lL---~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 238 S-------------------FEQTRPALPALARLI---HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp C-------------------HHHHTTHHHHHHHHT---TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred c-------------------HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 0 002244567777764 677788888888888888743211 112224677778887
Q ss_pred CCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHH
Q 001018 808 GDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVN 887 (1188)
Q Consensus 808 ~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ 887 (1188)
.+.... + | . + ....|..++.. .+ .
T Consensus 296 ~~~~~~-v-~-------------~------------~---------------a~~~L~nl~~~-----------~~---~ 319 (528)
T 4b8j_A 296 LHPSPS-V-L-------------I------------P---------------ALRTVGNIVTG-----------DD---A 319 (528)
T ss_dssp TCSCHH-H-H-------------H------------H---------------HHHHHHHHTTS-----------CH---H
T ss_pred cCCChh-H-H-------------H------------H---------------HHHHHHHHHcC-----------CH---H
Confidence 664210 0 0 0 0 00011111110 00 0
Q ss_pred HHHhhhchhhHHHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhc---hhhhhhhhhhHHHhhccCCCcchHHHHHHH
Q 001018 888 AVRFLCTFEEHHTMVFNILWEMVVSS-NIDMKINAANLLKVIVPYIN---AKVTSMQVLPALVTLGSDQNLNVKYASIDA 963 (1188)
Q Consensus 888 ai~~Lg~~e~~~~~iLpiL~~lv~D~-~pnVR~naak~L~~L~~~ig---~~~ls~~VlPaLv~LasD~d~dVR~aaieA 963 (1188)
. ....+...++|.|..++.++ .+.||..++..|..|+..-. ...+...++|.|+.+.++.+..||..+..+
T Consensus 320 ~-----~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 320 Q-----TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp H-----HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred H-----HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 00111245789999999999 99999999999999975321 134556889999999999999999999999
Q ss_pred HHHHHHhhchHH---H-HHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH--------------HHHH-HHHHHHHH
Q 001018 964 FGAVAQHFKNDM---I-VDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE--------------RLRD-YLLSKIFQ 1024 (1188)
Q Consensus 964 l~~LA~~l~~e~---~-~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~--------------~~r~-~IlP~L~~ 1024 (1188)
|+.++..-+.+. + ...+.+.+..++.+++..++..++.+|..+....+. .+.+ ..+..|..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987633332 2 245778888999999999999999999998754322 1112 34566777
Q ss_pred hhcCCCC
Q 001018 1025 LSAVPSS 1031 (1188)
Q Consensus 1025 L~~vpN~ 1031 (1188)
|...+|.
T Consensus 475 L~~~~~~ 481 (528)
T 4b8j_A 475 LQSHDNN 481 (528)
T ss_dssp GGGCSSH
T ss_pred HHcCCCH
Confidence 7666664
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.21 E-value=2.5e-09 Score=127.78 Aligned_cols=348 Identities=14% Similarity=0.069 Sum_probs=222.9
Q ss_pred hhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh----hhhhhhhHHHHHHhhcCC-cHHHHHHHHHHHHhhcccCCCc
Q 001018 540 MELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP----EIRDSLILSIVQQLVEDS-ATVVREAAARNLALLLPLFPNT 614 (1188)
Q Consensus 540 ~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~----e~r~slLL~~LqqL~eD~-e~~VR~aAAksL~~l~~~l~~~ 614 (1188)
.+.+|.+.+.+.++.+++|..++..+..+...-+. .....-++|.|.+++.+. .+.||..|+..|..++..-++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34577777777777889999999988888643211 122344789999988887 8999999999999998743221
Q ss_pred h---hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhh
Q 001018 615 D---KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGE 691 (1188)
Q Consensus 615 d---~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~ 691 (1188)
. ....+++.++.++.++++.||..|+..| ..++.- ....
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL-~~l~~~---~~~~---------------------------------- 207 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL-GNVAGD---STDY---------------------------------- 207 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHH-HHHHTT---CHHH----------------------------------
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH-HHHhCC---Cccc----------------------------------
Confidence 1 1124577788888888888887775544 111110 0000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCC
Q 001018 692 RERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEK 771 (1188)
Q Consensus 692 d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~ 771 (1188)
...+ +...++|.++++. .+.
T Consensus 208 --------------------~~~~-------------------------------------~~~~~l~~L~~ll---~~~ 227 (530)
T 1wa5_B 208 --------------------RDYV-------------------------------------LQCNAMEPILGLF---NSN 227 (530)
T ss_dssp --------------------HHHH-------------------------------------HHTTCHHHHHHGG---GSC
T ss_pred --------------------hHHH-------------------------------------HHcCcHHHHHHHh---ccC
Confidence 0000 1112345555554 456
Q ss_pred cHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhh
Q 001018 772 EDNLRNRITKFLLAVSKQF---GDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLA 848 (1188)
Q Consensus 772 sWrVR~Aia~~l~~La~~f---G~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~ 848 (1188)
++.||..++..+..||..- ........++|.++.++.+.... + | ..
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v-~-------------~~---------------- 276 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-T-L-------------VD---------------- 276 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH-H-H-------------HH----------------
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH-H-H-------------HH----------------
Confidence 6788888888888888432 12333456788888888664210 0 0 00
Q ss_pred hhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 001018 849 GVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVI 928 (1188)
Q Consensus 849 gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L 928 (1188)
....|..++.. .++... ......++|.|..++.|+.+.||..++..|..+
T Consensus 277 -----------a~~~L~~L~~~-----------~~~~~~--------~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 277 -----------ACWAISYLSDG-----------PQEAIQ--------AVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp -----------HHHHHHHHHSS-----------CHHHHH--------HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhCC-----------CHHHHH--------HHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 00112222210 000000 111235789999999999999999999999999
Q ss_pred Hhhh---chhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001018 929 VPYI---NAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK---NDMIVDKIRVQMDAFLEDGSHEATVAVVRA 1002 (1188)
Q Consensus 929 ~~~i---g~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~---~e~~~ekl~~~~~slL~D~~~~vR~~vv~a 1002 (1188)
+..- ....+...++|.|+.+.+++++.||..++.+|+.++.... ...+...+.+.+..+|.++++.++..++.+
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7532 2234556899999999999999999999999999985321 122335678889999999999999999999
Q ss_pred HHHhcccCCH--H----HHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHH
Q 001018 1003 LAVAVPHTTE--R----LRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIR 1050 (1188)
Q Consensus 1003 l~~l~p~~~~--~----~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~ 1050 (1188)
++.++...++ . +.+ .++|.|..+...++. .-|...+.+|...+.
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN----RIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCH----HHHHHHHHHHHHHHH
Confidence 9999766544 3 333 478888888775543 125455555544433
No 19
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.19 E-value=1.9e-09 Score=117.85 Aligned_cols=124 Identities=17% Similarity=0.084 Sum_probs=76.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHH
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILS 583 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~ 583 (1188)
+..++.+++|+++.+|..++..++.++ . .+.+|.+.++++|+.+.||..++..+|.+... ......+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----C----chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHH
Confidence 345566677788888888777777664 1 34566666677777777887777777766421 111223455
Q ss_pred HHHH-hhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHH
Q 001018 584 IVQQ-LVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTF 640 (1188)
Q Consensus 584 ~Lqq-L~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~ 640 (1188)
.|.. +..|+.+.||.+++..|+.++...+. ....+.+.+..+++|+++.||..++
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 5653 56777777888777777777643221 1224555666666666666665553
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.19 E-value=4.7e-09 Score=123.92 Aligned_cols=446 Identities=11% Similarity=0.035 Sum_probs=256.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCch-hh--HhhHHHHHHHHhh-cCchhHHHHHHHHHHHHHhhhC--h
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEM-RT--EMELLPQCWEQIN-HMYEERRLLVAQSCGELAEFVR--P 574 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~e-rt--~~ELLP~l~eli~-Dd~dEVRlLvAescg~La~~vg--~ 574 (1188)
...+..|..+++++++.+|..++..+..++..-... .. ....+|.+.+.+. ++.+++|..++..+..|+..-. .
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 346778888999999999999999999988632211 11 1246777777664 4478899999999888764311 1
Q ss_pred hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch---hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc
Q 001018 575 EIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD---KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 575 e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d---~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~ 651 (1188)
.+...-.+|.|..+..+..+.||..++..|..++..-++.. ....+++.+..++.+++..|+..++..+ ..++.
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L-~~la~-- 172 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL-QILAY-- 172 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH-HHHHT--
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH-HHHHh--
Confidence 12233468899999999999999999999999987654421 1245789999999999999988876555 22221
Q ss_pred cchHHHHHH-----HHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 001018 652 SKLDHILRV-----LLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSL 726 (1188)
Q Consensus 652 ~~~~~ll~~-----ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~q 726 (1188)
........ .++.|+.-++.. -.+...|. ...+ +.. +.. +
T Consensus 173 -~~~~~~~~i~~~~~i~~L~~ll~~~----------------~~~~~~~~-------a~~~---L~~-l~~-~------- 216 (529)
T 1jdh_A 173 -GNQESKLIILASGGPQALVNIMRTY----------------TYEKLLWT-------TSRV---LKV-LSV-C------- 216 (529)
T ss_dssp -TCHHHHHHHHHTTHHHHHHHHHHHC----------------CCHHHHHH-------HHHH---HHH-HTT-S-------
T ss_pred -CCHHHHHHHHHCCCHHHHHHHHHhC----------------ChHHHHHH-------HHHH---HHH-Hhc-C-------
Confidence 11100000 011111000000 00000010 0000 000 000 0
Q ss_pred CcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 001018 727 SEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVA 806 (1188)
Q Consensus 727 d~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~l 806 (1188)
+.. .-..+....+|.+.++. .+.+..+|..++..+..||...........++|.++.+
T Consensus 217 -~~~------------------~~~~~~~g~~~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~l 274 (529)
T 1jdh_A 217 -SSN------------------KPAIVEAGGMQALGLHL---TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 274 (529)
T ss_dssp -TTH------------------HHHHHHTTHHHHHHTTT---TSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred -ccc------------------HHHHHHCCCHHHHHHHH---hCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHH
Confidence 000 00112234778888875 77788999999999999997654433345789999999
Q ss_pred hCCccccccCCccccccccCCCcchh-HhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhH
Q 001018 807 VGDNANLTFFPSTIHSGIRGLKPRTA-VGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEI 885 (1188)
Q Consensus 807 L~D~~~~~i~R~a~~~~I~~L~~rta-ig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~l 885 (1188)
+.+.... +|..+...+.+|..... ....+.....+| .|-++....+. +|.+ +.+ .
T Consensus 275 l~~~~~~--v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~------------------~L~~ll~~~~~--~~~v-~~~-a 330 (529)
T 1jdh_A 275 LGSDDIN--VVTCAAGILSNLTCNNYKNKMMVCQVGGIE------------------ALVRTVLRAGD--REDI-TEP-A 330 (529)
T ss_dssp TTCSCHH--HHHHHHHHHHHHTTTCHHHHHHHHHTTHHH------------------HHHHHHHHHTT--CHHH-HHH-H
T ss_pred HcCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHcCChH------------------HHHHHHHccCC--HHHH-HHH-H
Confidence 9765311 12222222222211000 000000001112 12222211110 1222 111 1
Q ss_pred HHHHHhhhch---------hhHHHhHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhhc--hhhhhhhhhhHHHhhccCCC
Q 001018 886 VNAVRFLCTF---------EEHHTMVFNILWEMVVSSN-IDMKINAANLLKVIVPYIN--AKVTSMQVLPALVTLGSDQN 953 (1188)
Q Consensus 886 l~ai~~Lg~~---------e~~~~~iLpiL~~lv~D~~-pnVR~naak~L~~L~~~ig--~~~ls~~VlPaLv~LasD~d 953 (1188)
+.++..|+.. .......+|.|.+++.++. +.||..++..|..++..-. ..++...++|.|+.+..+.+
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~ 410 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHh
Confidence 3333334321 1112346899999999987 5999999999998874311 23556788999999999998
Q ss_pred cchHHHHH----------------------HHHHHHHHhhch--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 954 LNVKYASI----------------------DAFGAVAQHFKN--DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 954 ~dVR~aai----------------------eAl~~LA~~l~~--e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
++||..+. .++..++..... ......+.+.+..++.|++.+++..++.++..++..
T Consensus 411 ~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 411 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 88887544 333333322111 122344668888999999999999999999998732
Q ss_pred --CCHHHHH-HHHHHHHHhhcCCCC
Q 001018 1010 --TTERLRD-YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 1010 --~~~~~r~-~IlP~L~~L~~vpN~ 1031 (1188)
....+.+ ..++.|..+...+|.
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~ 515 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNE 515 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCH
Confidence 1112233 467888888877664
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.16 E-value=1.1e-08 Score=129.09 Aligned_cols=472 Identities=12% Similarity=0.050 Sum_probs=259.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh-h--HhhHHHHHHHHhh-cCchhHHHHHHHHHHHHHhhhC--h
Q 001018 501 DSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR-T--EMELLPQCWEQIN-HMYEERRLLVAQSCGELAEFVR--P 574 (1188)
Q Consensus 501 ~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er-t--~~ELLP~l~eli~-Dd~dEVRlLvAescg~La~~vg--~ 574 (1188)
...+..|..+++++++.+|..++..+..|+..-+... . ...++|.+.+.+. ++..++|..++..+..|+..-. .
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 4567788888889999999999999999987432211 1 1256777776554 4478899999999988774311 1
Q ss_pred hhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch-h--hhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc
Q 001018 575 EIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD-K--YFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 575 e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d-~--~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~ 651 (1188)
.+...-.++.|..++++..+.||+.|+..|..|+..-++.- . ...+++.++.++.+....|+..++..+ -.++. .
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL-~~La~-~ 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL-QILAY-G 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH-HHHHT-T
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH-HHHhc-C
Confidence 12223468999999999999999999999999997654421 1 235789999999999999988876655 22221 1
Q ss_pred cchH--HHH-HHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCc
Q 001018 652 SKLD--HIL-RVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSE 728 (1188)
Q Consensus 652 ~~~~--~ll-~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~ 728 (1188)
.... .+. ...++.|+..++.... ..........+..+......+-.. .-...+|.+...+. + .+.
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i---~~~g~l~~Ll~lL~-------~-~~~ 374 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI---VEAGGMQALGLHLT-------D-PSQ 374 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSTTHHHHH---HHTTHHHHHGGGTT-------C-SCH
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHHHHHH---HHhchHHHHHHHHc-------C-Cch
Confidence 1000 000 0011222111111100 000000001111111111111111 11233444433222 1 122
Q ss_pred ccccc-hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHH
Q 001018 729 ETVFP-SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFG---DSYLTHIMLPVFM 804 (1188)
Q Consensus 729 evrl~-~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG---~e~t~~~LlP~fl 804 (1188)
.++.. ...+..+......+.+ ...++|.++++. .+.+|.||..++..|..|+..-. ..+.....+|.++
T Consensus 375 ~~~~~a~~~L~~L~~~~~~~~~----~~~~i~~Lv~lL---~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 447 (780)
T 2z6g_A 375 RLVQNCLWTLRNLSDAATKQEG----MEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447 (780)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSC----CHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhh----hhhHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 22211 1122211112222222 246889999885 88999999999999999976311 1122234678888
Q ss_pred HHhCCccccccCCccccccccCCCcchhH----hhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccc
Q 001018 805 VAVGDNANLTFFPSTIHSGIRGLKPRTAV----GERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVK 880 (1188)
Q Consensus 805 ~lL~D~~~~~i~R~a~~~~I~~L~~rtai----g~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~ 880 (1188)
.+|.+..+..-+|..+...+.+|..+..- ...+.....+|.++. +|... ..|.+-
T Consensus 448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~-lL~~~--------------------~~~~v~ 506 (780)
T 2z6g_A 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK-LLHPP--------------------SHWPLI 506 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH-TTSTT--------------------CCHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH-HhcCC--------------------ChHHHH
Confidence 88866321000132222233333211000 001111112333322 22211 111110
Q ss_pred hhhhHHHHHHhhhchhh-----HHHhHHHHHHHhhcCCC----------------------hhHHHHHHHHHHHHHhhhc
Q 001018 881 CNAEIVNAVRFLCTFEE-----HHTMVFNILWEMVVSSN----------------------IDMKINAANLLKVIVPYIN 933 (1188)
Q Consensus 881 ~~p~ll~ai~~Lg~~e~-----~~~~iLpiL~~lv~D~~----------------------pnVR~naak~L~~L~~~ig 933 (1188)
.. .+.+|..|+.... ....++|.|.+++.+.. ..||.+++..|..++..-.
T Consensus 507 ~~--A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~ 584 (780)
T 2z6g_A 507 KA--TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH 584 (780)
T ss_dssp HH--HHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH
T ss_pred HH--HHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh
Confidence 00 1222222321111 12346677777766543 3466777777777753211
Q ss_pred --hhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch-HHHH-HHHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 934 --AKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN-DMIV-DKIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 934 --~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~-e~~~-ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
.......++|.|+.|..+++.+||.++..+|..++..-.. +.+. ....+.+..++.|++..+|..++.+|..+...
T Consensus 585 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 1244678899999999999999999999999988743111 1222 22567788899999999999999999999876
Q ss_pred CCHHHHH
Q 001018 1010 TTERLRD 1016 (1188)
Q Consensus 1010 ~~~~~r~ 1016 (1188)
-+..++.
T Consensus 665 ~~~~~~~ 671 (780)
T 2z6g_A 665 KPQDYKK 671 (780)
T ss_dssp SCTTHHH
T ss_pred ChHhhhc
Confidence 6655543
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.11 E-value=5.3e-08 Score=122.74 Aligned_cols=404 Identities=12% Similarity=0.022 Sum_probs=238.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh--hh-hhh
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE--IR-DSL 580 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e--~r-~sl 580 (1188)
+..+.+.++++++.+|+.++.-+..+.. .......+|.+..++.++...||..++..++.|+..-... +. ..-
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 3445666677888888887776654422 2333567888888888888999999999999998642211 11 112
Q ss_pred hHHHHHH-hhcCCcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHH
Q 001018 581 ILSIVQQ-LVEDSATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHI 657 (1188)
Q Consensus 581 LL~~Lqq-L~eD~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~l 657 (1188)
+++.|.. |..++.+.||..|+..|..++..-.... ....+++.+..++++..+.|+..|+..| -.++.......
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL-~nLa~~~~~~~-- 269 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTL-HNLLLHQEGAK-- 269 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH-HHHHHHSTTHH--
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHhCCChhhH--
Confidence 4555555 5556699999999999998775421111 1123667777777777777776665444 11111000000
Q ss_pred HHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhh
Q 001018 658 LRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLL 737 (1188)
Q Consensus 658 l~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll 737 (1188)
. .+
T Consensus 270 -----------------------------------~---------~v--------------------------------- 272 (780)
T 2z6g_A 270 -----------------------------------M---------AV--------------------------------- 272 (780)
T ss_dssp -----------------------------------H---------HH---------------------------------
T ss_pred -----------------------------------H---------HH---------------------------------
Confidence 0 00
Q ss_pred hhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHhCCccccc
Q 001018 738 ELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQ---FGDSYLTHIMLPVFMVAVGDNANLT 814 (1188)
Q Consensus 738 ~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~---fG~e~t~~~LlP~fl~lL~D~~~~~ 814 (1188)
.....+|.++++. .+.+|+||..++..+..||.. .-..+.....+|.++.++++....
T Consensus 273 ---------------~~~g~v~~Lv~lL---~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~- 333 (780)
T 2z6g_A 273 ---------------RLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE- 333 (780)
T ss_dssp ---------------HHTTHHHHHHHGG---GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCH-
T ss_pred ---------------HHcCCHHHHHHHH---hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHH-
Confidence 0112345555554 456778888888888777631 111112223456666777654210
Q ss_pred cCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhc
Q 001018 815 FFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCT 894 (1188)
Q Consensus 815 i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~ 894 (1188)
...+.. ...|..+.. +. .. .
T Consensus 334 -------------------~~~~~a---------------------~~aL~~Ls~----~~----~~------------~ 353 (780)
T 2z6g_A 334 -------------------KLLWTT---------------------SRVLKVLSV----CS----SN------------K 353 (780)
T ss_dssp -------------------HHHHHH---------------------HHHHHHHHT----ST----TH------------H
T ss_pred -------------------HHHHHH---------------------HHHHHHhhc----Ch----HH------------H
Confidence 000000 001111111 10 00 0
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh--c
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF--K 972 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l--~ 972 (1188)
.......++|.|..++.+..+.+|.+++..|..++...........++|.|+.|..++++.||..+..+|..|+..- .
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 11222457899999999999999999999999998765444345679999999999999999999999999987632 1
Q ss_pred hH-HHHHHHHHHHHHHhcC-CCh-hHHHHHHHHHHHhcccCCH------HHHH-HHHHHHHHhhcCCCCChhhHHHHHHH
Q 001018 973 ND-MIVDKIRVQMDAFLED-GSH-EATVAVVRALAVAVPHTTE------RLRD-YLLSKIFQLSAVPSSSSDVMRRRERA 1042 (1188)
Q Consensus 973 ~e-~~~ekl~~~~~slL~D-~~~-~vR~~vv~al~~l~p~~~~------~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vA 1042 (1188)
.. .+.....+.+..++.+ +.. .++..++.+|+.|...... .++. ..+|.|..+...++. . .-|.+.+
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~-~--~v~~~A~ 510 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH-W--PLIKATV 510 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC-H--HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh-H--HHHHHHH
Confidence 11 2223456667777765 333 8999999999999754332 3455 678888888775542 1 1144444
Q ss_pred HHHHHHHHhhccccC-chhhhhhhHHHHHHHHHhcc
Q 001018 1043 NAFCESIRALDATEL-SATSVRDFLLPAIQNLLKDA 1077 (1188)
Q Consensus 1043 k~l~~a~~aL~~~~l-~~~~v~~~ilP~L~~L~~D~ 1077 (1188)
.++..|...+. -..++...++|.|..++.+.
T Consensus 511 ----~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~ 542 (780)
T 2z6g_A 511 ----GLIRNLALCPANHAPLREQGAIPRLVQLLVRA 542 (780)
T ss_dssp ----HHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhc
Confidence 44444432211 12344567789888888764
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.10 E-value=2.1e-08 Score=122.27 Aligned_cols=405 Identities=13% Similarity=0.102 Sum_probs=235.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhh
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLI 581 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slL 581 (1188)
-+++.|.+.++|++|.+|..|+..++.+ +.......++|.+...+.|..+.||-.++.+++.+....+......-+
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~ 161 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGF 161 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccH
Confidence 3467888889999999999998777665 344556678888999999999999999999999998844332333457
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc---hhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHH
Q 001018 582 LSIVQQLVEDSATVVREAAARNLALLLPLFPNT---DKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHIL 658 (1188)
Q Consensus 582 L~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~---d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll 658 (1188)
++.+..+..|+.+.||.+|+..|..++..-++. +........++..+.|..+-++...+. .+.++........
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~----~l~~l~~~~~~~~ 237 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILD----CLSNYNPKDDREA 237 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHH----HHHTSCCCSHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHH----HHHHhCCCChHHH
Confidence 899999999999999999999999999875533 111233344444444555444433322 2333333222222
Q ss_pred HHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhh
Q 001018 659 RVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLL 737 (1188)
Q Consensus 659 ~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll 737 (1188)
..+++.+.+.+++ .++.+++. +..+
T Consensus 238 ~~~l~~l~~~l~~------------------------------------------------------~~~~V~~ea~~~i 263 (591)
T 2vgl_B 238 QSICERVTPRLSH------------------------------------------------------ANSAVVLSAVKVL 263 (591)
T ss_dssp HHHHHHHTTCSCS------------------------------------------------------STTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC------------------------------------------------------CChHHHHHHHHHH
Confidence 3344443221110 01112211 0000
Q ss_pred hhhhcCC-CCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccC
Q 001018 738 ELYAGGH-IEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFF 816 (1188)
Q Consensus 738 ~l~~~~~-~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~ 816 (1188)
-.+.... ..=..+.-+...+.|.++.+. ++...||+.+...+..++.... +.+..++. .|...+.|+.. |
T Consensus 264 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~----~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~-~~~~~~~d~~~--I- 334 (591)
T 2vgl_B 264 MKFLELLPKDSDYYNMLLKKLAPPLVTLL----SGEPEVQYVALRNINLIVQKRP-EILKQEIK-VFFVKYNDPIY--V- 334 (591)
T ss_dssp HHSCCSCCBTTBSHHHHHHHTHHHHHHHT----TSCHHHHHHHHHHHHHHHHHCC-STTTTCTT-TTSCCTTSCHH--H-
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHhCh-HHHHHHHH-hheeccCChHH--H-
Confidence 0000000 000012223456677777774 2567899999999999987643 22222222 12222333321 1
Q ss_pred CccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh-ch
Q 001018 817 PSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC-TF 895 (1188)
Q Consensus 817 R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg-~~ 895 (1188)
|. ..- .++-. +. +.+.+...+..|..... +..|.+ ..+++.+|..+| ++
T Consensus 335 r~-------------~al------~~L~~-----l~---~~~nv~~iv~~L~~~l~-~~d~~~--r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 335 KL-------------EKL------DIMIR-----LA---SQANIAQVLAELKEYAT-EVDVDF--VRKAVRAIGRCAIKV 384 (591)
T ss_dssp HH-------------HHH------HHHHH-----TC---CSSTHHHHHHHHHHHTT-SSCHHH--HHHHHHHHHHHHTTC
T ss_pred HH-------------HHH------HHHHH-----HC---ChhhHHHHHHHHHHHHh-cCCHHH--HHHHHHHHHHHHHhC
Confidence 21 000 00000 00 11111112222222111 111222 112356666665 35
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhc-cCCCcchHHHHHHHHHHHHHhhchH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLG-SDQNLNVKYASIDAFGAVAQHFKND 974 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~La-sD~d~dVR~aaieAl~~LA~~l~~e 974 (1188)
....+.+++++.+++.|....||-.++..+..+...... ....+++.|.+.. .+.+..+|.+++-.+|..+......
T Consensus 385 ~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~ 462 (591)
T 2vgl_B 385 EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN--KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA 462 (591)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH
T ss_pred hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH
Confidence 556788999999999999999999999888888765432 2356677776644 4678899999999888877665331
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH
Q 001018 975 MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE 1012 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~ 1012 (1188)
..+...+..-+.|.+..+|..++.++.++....+.
T Consensus 463 ---~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 463 ---DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp ---HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred ---HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 12222222223356789999999999999876654
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.08 E-value=7.5e-08 Score=118.22 Aligned_cols=470 Identities=12% Similarity=0.046 Sum_probs=258.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh---hHhhHHHHHHHHhhc-CchhHHHHHHHHHHHHHhhhC--hh
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR---TEMELLPQCWEQINH-MYEERRLLVAQSCGELAEFVR--PE 575 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er---t~~ELLP~l~eli~D-d~dEVRlLvAescg~La~~vg--~e 575 (1188)
..+..|..+++++++.+|..++..+..++..-.... .....+|.+...+.+ +..++|..++..+..|+..-. ..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 357788888999999999999999999987543211 112467777776654 477899988888887764311 11
Q ss_pred hhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch-h--hhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhccc
Q 001018 576 IRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD-K--YFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGS 652 (1188)
Q Consensus 576 ~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d-~--~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~ 652 (1188)
+...-.++.|..++.+..+.||..|+..|..++..-+... . ...+++.++.++++.+..++.+++..| ..++.-..
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L-~~La~~~~ 172 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL-QILAYGNQ 172 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH-HHHHTTCH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH-HHHHhcCc
Confidence 2233468999999999999999999999999987654321 1 246889999999999988888776554 33332111
Q ss_pred chH-HHH-HHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHH-HHHHHHHHHHHhhhCCCCCCCCCcc
Q 001018 653 KLD-HIL-RVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMM-AELLPFMQKNAIETCPFSSVSLSEE 729 (1188)
Q Consensus 653 ~~~-~ll-~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l-~~LLP~i~~~l~~~~pf~s~~qd~e 729 (1188)
... .+. ...++.|+.-++... ...+.-.....+..+.....-|- . ++ ...+|.+...+. . .+..
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~-~---l~~~g~l~~L~~ll~-------~-~~~~ 239 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKP-A---IVEAGGMQALGLHLT-------D-PSQR 239 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHH-H---HHHTTHHHHHHTTTT-------C-SCHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHH-H---HHHCCCHHHHHHHHh-------c-CCHH
Confidence 000 000 011222222111111 00000001111111111110010 1 11 124444444222 1 1222
Q ss_pred ccc-chhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHH
Q 001018 730 TVF-PSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQF---GDSYLTHIMLPVFMV 805 (1188)
Q Consensus 730 vrl-~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f---G~e~t~~~LlP~fl~ 805 (1188)
++. ....+..++.....+.. ...++|.++++. .+..+.||..++..+..||..- -........+|.++.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~~~----~~~~i~~Lv~lL---~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~ 312 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQEG----MEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTCCS----CHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhh----hhhHHHHHHHHH---cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 222 11222222111111211 236789999885 7889999999999999998631 112223346888888
Q ss_pred HhCCccc-cccCCccccccccCCCcchh----HhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccc
Q 001018 806 AVGDNAN-LTFFPSTIHSGIRGLKPRTA----VGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVK 880 (1188)
Q Consensus 806 lL~D~~~-~~i~R~a~~~~I~~L~~rta----ig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~ 880 (1188)
+|.+..+ ..+ |..+...+.+|..+.. ....+.....+|.++. +|.. ..+|.+.
T Consensus 313 lL~~~~~~~~v-~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~-lL~~--------------------~~~~~v~ 370 (644)
T 2z6h_A 313 TVLRAGDREDI-TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK-LLHP--------------------PSHWPLI 370 (644)
T ss_dssp HHHHHTTCHHH-HHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHH-TTST--------------------TCCHHHH
T ss_pred HHHccCCcHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHH-HhCc--------------------cCchHHH
Confidence 8865321 001 2222222222211000 0000111112332221 2221 1112120
Q ss_pred hhhhHHHHHHhhhch-----hhHHHhHHHHHHHhhcCCC----------------------hhHHHHHHHHHHHHHhhhc
Q 001018 881 CNAEIVNAVRFLCTF-----EEHHTMVFNILWEMVVSSN----------------------IDMKINAANLLKVIVPYIN 933 (1188)
Q Consensus 881 ~~p~ll~ai~~Lg~~-----e~~~~~iLpiL~~lv~D~~----------------------pnVR~naak~L~~L~~~ig 933 (1188)
.. .+.++.-|+.. ......++|.|.+++.+.. ..|+.+++..|..++..-.
T Consensus 371 ~~--a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~ 448 (644)
T 2z6h_A 371 KA--TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448 (644)
T ss_dssp HH--HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HH--HHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH
Confidence 11 12222222211 1123456777777776643 4566677777776654321
Q ss_pred h--hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch-HHHH-HHHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 934 A--KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN-DMIV-DKIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 934 ~--~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~-e~~~-ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
. ......++|.|+.|..|++..||..+..++..++..-.. +.+. ....+.+..++.+++..+|..++.++..++..
T Consensus 449 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 1 234667899999999999999999999999888753111 1222 22456788889999999999999999999877
Q ss_pred CCHHHHH
Q 001018 1010 TTERLRD 1016 (1188)
Q Consensus 1010 ~~~~~r~ 1016 (1188)
-+..+..
T Consensus 529 ~~~~~~~ 535 (644)
T 2z6h_A 529 KPQDYKK 535 (644)
T ss_dssp SCHHHHH
T ss_pred CcHhhhc
Confidence 7655544
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.05 E-value=4.9e-08 Score=115.17 Aligned_cols=380 Identities=13% Similarity=0.019 Sum_probs=224.2
Q ss_pred HhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh--hh-hhhhhHHHHHH-hhcCCcHHHHHHHHHHHHhh
Q 001018 532 NVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP--EI-RDSLILSIVQQ-LVEDSATVVREAAARNLALL 607 (1188)
Q Consensus 532 ~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~--e~-r~slLL~~Lqq-L~eD~e~~VR~aAAksL~~l 607 (1188)
..|......-.+|.+-.++.++.+++|..++..++.++..-.. .. ...-.++.|.. |....++.||..++..|..+
T Consensus 8 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp ---------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444555566788888888889999999999999998853211 01 11124555555 44566899999999999987
Q ss_pred cccCCCch--hhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhh
Q 001018 608 LPLFPNTD--KYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESH 685 (1188)
Q Consensus 608 ~~~l~~~d--~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~ 685 (1188)
+..-+... .....++.+..+++++.+.|+..++..| -.++.-.
T Consensus 88 s~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L-~~l~~~~---------------------------------- 132 (529)
T 1jdh_A 88 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL-HNLLLHQ---------------------------------- 132 (529)
T ss_dssp TTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH-HHHHHHC----------------------------------
T ss_pred HcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHhcCC----------------------------------
Confidence 65311100 0113566666666666666655554333 1110000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhh
Q 001018 686 LRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLA 765 (1188)
Q Consensus 686 l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA 765 (1188)
+. .+ . .......+|.++++.
T Consensus 133 ------~~------------------------------------~~------~------------~i~~~g~i~~L~~ll 152 (529)
T 1jdh_A 133 ------EG------------------------------------AK------M------------AVRLAGGLQKMVALL 152 (529)
T ss_dssp ------TT------------------------------------HH------H------------HHHHHTHHHHHHHGG
T ss_pred ------cc------------------------------------hH------H------------HHHHcCCHHHHHHHH
Confidence 00 00 0 001123456666664
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhch
Q 001018 766 CLLPEKEDNLRNRITKFLLAVSKQ---FGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGV 842 (1188)
Q Consensus 766 ~~~~D~sWrVR~Aia~~l~~La~~---fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~l 842 (1188)
.+.+|++|..++..+..||.. ....+.....+|.++.++++.... ...|..
T Consensus 153 ---~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~--------------------~~~~~a--- 206 (529)
T 1jdh_A 153 ---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE--------------------KLLWTT--- 206 (529)
T ss_dssp ---GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH--------------------HHHHHH---
T ss_pred ---hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH--------------------HHHHHH---
Confidence 567789999988888888741 112223334567777777654211 000000
Q ss_pred hhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHH
Q 001018 843 LPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAA 922 (1188)
Q Consensus 843 LP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naa 922 (1188)
...|..+.. +. .. .........+|.|.+++.++.+.+|.+++
T Consensus 207 ------------------~~~L~~l~~----~~-----~~-----------~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 207 ------------------SRVLKVLSV----CS-----SN-----------KPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp ------------------HHHHHHHTT----ST-----TH-----------HHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred ------------------HHHHHHHhc----Cc-----cc-----------HHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 011111111 00 00 00111234788999999999999999999
Q ss_pred HHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh--chHH-HHHHHHHHHHHHhcC--CChhHHH
Q 001018 923 NLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF--KNDM-IVDKIRVQMDAFLED--GSHEATV 997 (1188)
Q Consensus 923 k~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l--~~e~-~~ekl~~~~~slL~D--~~~~vR~ 997 (1188)
..|..+............++|.|+.|..+++..||..+..++..++..- .... +.....+.+..++.+ .+..++.
T Consensus 249 ~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~ 328 (529)
T 1jdh_A 249 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328 (529)
T ss_dssp HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence 9999998765444445678999999999999999999999999997631 1222 223456677777765 3479999
Q ss_pred HHHHHHHHhcccCCH------HHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhcccc-CchhhhhhhHHHH
Q 001018 998 AVVRALAVAVPHTTE------RLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATE-LSATSVRDFLLPA 1069 (1188)
Q Consensus 998 ~vv~al~~l~p~~~~------~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~-l~~~~v~~~ilP~ 1069 (1188)
.++.+++.++...+. .+++ ..+|.|..+...++. . .-|.+. +.+++.+...+ .-..++...++|.
T Consensus 329 ~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~--~v~~~a----~~~l~nl~~~~~~~~~~~~~~~i~~ 401 (529)
T 1jdh_A 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-W--PLIKAT----VGLIRNLALCPANHAPLREQGAIPR 401 (529)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC-H--HHHHHH----HHHHHHHTTSGGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc-h--HHHHHH----HHHHHHHhcChhhhHHHHHcCCHHH
Confidence 999999999765332 3455 578888888775542 1 124444 34444444221 1234556678899
Q ss_pred HHHHHhcc
Q 001018 1070 IQNLLKDA 1077 (1188)
Q Consensus 1070 L~~L~~D~ 1077 (1188)
|..++++.
T Consensus 402 L~~ll~~~ 409 (529)
T 1jdh_A 402 LVQLLVRA 409 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.01 E-value=1.7e-07 Score=111.50 Aligned_cols=352 Identities=11% Similarity=0.104 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhh---
Q 001018 500 RDSLTHTLFNLIKRPD-EKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFV--- 572 (1188)
Q Consensus 500 R~~Ll~ll~nLiKddd-p~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~v--- 572 (1188)
...++..|..++++++ +.+|..++..+..++..-.. .-.....+|.+..++.+..++||..++..++.|+..-
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 3457888999999987 99999999999999872111 1223358899999999999999999999999998431
Q ss_pred ChhhhhhhhHHHHHHhh-cCCcHHHHHHHHHHHHhhcccCCCc--hhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHh
Q 001018 573 RPEIRDSLILSIVQQLV-EDSATVVREAAARNLALLLPLFPNT--DKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVIN 649 (1188)
Q Consensus 573 g~e~r~slLL~~LqqL~-eD~e~~VR~aAAksL~~l~~~l~~~--d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~ 649 (1188)
.......-.++.|.+++ .+..+.||..++..|..++..-+.. .....+++.+..++.+..+.|+..++..| ..++.
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL-~~l~~ 273 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWAL-SYLSD 273 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHc
Confidence 11122223577777766 7889999999999999999875433 23456788888888888888887775443 11110
Q ss_pred cccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcc
Q 001018 650 WGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEE 729 (1188)
Q Consensus 650 ~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~e 729 (1188)
... . ..+. +
T Consensus 274 ---~~~-------------------------------------~---------~~~~--------~-------------- 282 (528)
T 4b8j_A 274 ---GTN-------------------------------------D---------KIQA--------V-------------- 282 (528)
T ss_dssp ---SCH-------------------------------------H---------HHHH--------H--------------
T ss_pred ---CCH-------------------------------------H---------HHHH--------H--------------
Confidence 000 0 0000 0
Q ss_pred cccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHH
Q 001018 730 TVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFG---DSYLTHIMLPVFMVA 806 (1188)
Q Consensus 730 vrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG---~e~t~~~LlP~fl~l 806 (1188)
+...++|.++++. .+.++.||..++..+..+|..-. .......++|.++.+
T Consensus 283 -----------------------~~~g~v~~Lv~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (528)
T 4b8j_A 283 -----------------------IEAGVCPRLVELL---LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL 336 (528)
T ss_dssp -----------------------HHTTCHHHHHHHT---TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred -----------------------HHcCHHHHHHHHH---cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 0112455555553 66778888888888888875211 111223457888888
Q ss_pred hCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHH
Q 001018 807 VGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIV 886 (1188)
Q Consensus 807 L~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll 886 (1188)
|.+.....+ +.. ....|..++.. + +
T Consensus 337 L~~~~~~~v--------------~~~---------------------------A~~~L~nl~~~-~----------~--- 361 (528)
T 4b8j_A 337 LTQNLKKSI--------------KKE---------------------------ACWTISNITAG-N----------K--- 361 (528)
T ss_dssp HHSCCCHHH--------------HHH---------------------------HHHHHHHHHTS-C----------H---
T ss_pred HcCCCcHHH--------------HHH---------------------------HHHHHHHHHCC-C----------H---
Confidence 865411100 000 00112222210 0 0
Q ss_pred HHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh----hhhhhhhhHHHhhccCCCcchHHHHHH
Q 001018 887 NAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK----VTSMQVLPALVTLGSDQNLNVKYASID 962 (1188)
Q Consensus 887 ~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~----~ls~~VlPaLv~LasD~d~dVR~aaie 962 (1188)
..+. ......++|.|.+++.+..+.||..++..|..++..-+.+ .+...++|.|..|..+++..|+..++.
T Consensus 362 ~~~~-----~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 362 DQIQ-----AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp HHHH-----HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHH-----HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 0000 1112357899999999999999999999999998663332 445689999999999999999999999
Q ss_pred HHHHHHHhhchH---------HHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHhccc
Q 001018 963 AFGAVAQHFKND---------MIVD-----KIRVQMDAFLEDGSHEATVAVVRALAVAVPH 1009 (1188)
Q Consensus 963 Al~~LA~~l~~e---------~~~e-----kl~~~~~slL~D~~~~vR~~vv~al~~l~p~ 1009 (1188)
+|..+....... .+.. .....+..+..+++..++-.+...+..+...
T Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 999988643221 1111 1234556677777777777777777776543
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.01 E-value=2.3e-07 Score=113.97 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=89.0
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM 975 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~ 975 (1188)
......+.+.|..++.++.|+||+.++..|..++..- ++.+ +...+.+..+.+|+|..||..+++.+..++..-+.+.
T Consensus 308 ~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~ 385 (618)
T 1w63_A 308 SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-HNAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG 385 (618)
T ss_dssp HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-HHHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-HHHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH
Confidence 4445567888889999999999999999999998763 3344 3456677888899999999999999988887655444
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH
Q 001018 976 IVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 976 ~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
+...+..++.+.+..+|..++++++.++....+.
T Consensus 386 ----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~ 419 (618)
T 1w63_A 386 ----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS 419 (618)
T ss_dssp ----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc
Confidence 4455666777788999999999999998876554
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.97 E-value=2.6e-07 Score=113.48 Aligned_cols=398 Identities=13% Similarity=0.044 Sum_probs=212.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchh---hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhC---hhh
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR---TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVR---PEI 576 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~er---t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg---~e~ 576 (1188)
.+..|..+++++++.+|..++..+..++..-...+ .....+|.+.+++.+..++++..++.++..++.--. ...
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 56678888888888999999888888887653322 245678888888887777777777777777764110 011
Q ss_pred hhhhhHHHHHHhhcCC-cHHHHHHHHHHHHhhcc--cCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccc
Q 001018 577 RDSLILSIVQQLVEDS-ATVVREAAARNLALLLP--LFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSK 653 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~-e~~VR~aAAksL~~l~~--~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~ 653 (1188)
...-.++.|..++++. ...+|++++..|..++. ..-.......+++.+..++.+.+..|+..++..| -.++.-...
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L-~nL~~~~~~ 257 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL-RNLSDAATK 257 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHH-HHHGGGCTT
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH-HHHhhcchh
Confidence 1222356666655544 35677777777766542 1111122234778888888888888888877776 555553322
Q ss_pred hHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc
Q 001018 654 LDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP 733 (1188)
Q Consensus 654 ~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~ 733 (1188)
.... ..+++.|+.-+.. ..+.++. .....+ ..+.. . ....+
T Consensus 258 ~~~~-~~~i~~Lv~lL~~---------------------~d~~v~~---~a~~aL----~~L~~------~--~~~~~-- 298 (644)
T 2z6h_A 258 QEGM-EGLLGTLVQLLGS---------------------DDINVVT---CAAGIL----SNLTC------N--NYKNK-- 298 (644)
T ss_dssp CCSC-HHHHHHHHHHTTC---------------------SCHHHHH---HHHHHH----HHHHT------T--CHHHH--
T ss_pred hhhh-hhHHHHHHHHHcC---------------------CCHHHHH---HHHHHH----HHHHc------C--CHHHH--
Confidence 2111 2233333221110 0011111 111110 00110 0 00000
Q ss_pred hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHH------HHHHHHHHHHHHHh
Q 001018 734 SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDS------YLTHIMLPVFMVAV 807 (1188)
Q Consensus 734 ~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e------~t~~~LlP~fl~lL 807 (1188)
.. .+....+|.++++... ....+.||..++..+..|+..-+.+ +.....+|.++.+|
T Consensus 299 ----~~------------v~~~g~v~~Lv~lL~~-~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 299 ----MM------------VCQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp ----HH------------HHHTTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTT
T ss_pred ----HH------------HHHcCCHHHHHHHHHc-cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHh
Confidence 00 0112245666665421 1123788888888888887543321 23345788999999
Q ss_pred CCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccch------
Q 001018 808 GDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKC------ 881 (1188)
Q Consensus 808 ~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~------ 881 (1188)
++.....+ |.++...+.+|.........+.....+|.++. .+..-..+.-....|....
T Consensus 362 ~~~~~~~v-~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~--------------lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 362 HPPSHWPL-IKATVGLIRNLALCPANHAPLREQGAIPRLVQ--------------LLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp STTCCHHH-HHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH--------------HHHHHHHHHTTC----------CCS
T ss_pred CccCchHH-HHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH--------------HHhccchhhhhHhhhccccchhccc
Confidence 76531111 22222222333211111111112222332211 1111000000011222211
Q ss_pred --hhh----HHHHHHhhhchhhH-----HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--hchhhhhhhhhhHHHhh
Q 001018 882 --NAE----IVNAVRFLCTFEEH-----HTMVFNILWEMVVSSNIDMKINAANLLKVIVPY--INAKVTSMQVLPALVTL 948 (1188)
Q Consensus 882 --~p~----ll~ai~~Lg~~e~~-----~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~--ig~~~ls~~VlPaLv~L 948 (1188)
..+ .+.++..|+.+... ...++|.|.+++.+..++||.+++..|..+... ..........++.|..|
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHH
Confidence 001 12333334332221 245689999999999999999999999988753 22224455678999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhc
Q 001018 949 GSDQNLNVKYASIDAFGAVAQHFK 972 (1188)
Q Consensus 949 asD~d~dVR~aaieAl~~LA~~l~ 972 (1188)
..+++..||.++..++..++..-+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999987654
No 29
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.96 E-value=1.6e-10 Score=126.45 Aligned_cols=91 Identities=20% Similarity=0.118 Sum_probs=70.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHH
Q 001018 507 LFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQ 586 (1188)
Q Consensus 507 l~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~Lq 586 (1188)
+..+++||+++||+.++..+ ++ ..+..+++|++++||+.+|..+ +. +.|.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~ 104 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLS 104 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHH
Confidence 44677999999999999854 22 1245578999999999999752 22 2467
Q ss_pred HhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHh
Q 001018 587 QLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKE 642 (1188)
Q Consensus 587 qL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~ 642 (1188)
.+++|++|.||++++.+| +. +.+..|++|++..||.+++..
T Consensus 105 ~ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~ 145 (244)
T 1lrv_A 105 ALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQR 145 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHh
Confidence 789999999999999864 21 246688999999999988664
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.95 E-value=1e-08 Score=110.37 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=143.1
Q ss_pred hhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHHHHHHHHHHh-CCccccccCCccccccccCCCcc
Q 001018 755 VDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGD---SYLTHIMLPVFMVAV-GDNANLTFFPSTIHSGIRGLKPR 830 (1188)
Q Consensus 755 ~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~---e~t~~~LlP~fl~lL-~D~~~~~i~R~a~~~~I~~L~~r 830 (1188)
..+-|.+.+.. .+++|++|.+.+..+..+++.-+. .. ...+.+.+..++ +|.... ++
T Consensus 14 ~~l~~~l~~~l---~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~---------------V~ 74 (242)
T 2qk2_A 14 SKMPKDFYDKL---EEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVV---------------LV 74 (242)
T ss_dssp GGSCTTHHHHH---TCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHH---------------HH
T ss_pred ccCCHHHHhhh---ccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHH---------------HH
Confidence 34445566664 899999999999999999887321 11 245677788888 374310 00
Q ss_pred hhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh-chhhHHHhHHHHHHHh
Q 001018 831 TAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC-TFEEHHTMVFNILWEM 909 (1188)
Q Consensus 831 taig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg-~~e~~~~~iLpiL~~l 909 (1188)
..+ .+.+..|.. .++ .++.+...++|.+++.
T Consensus 75 ~~a---------------------------~~~l~~la~---------------------~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 75 AMA---------------------------GKCLALLAK---------------------GLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp HHH---------------------------HHHHHHHHH---------------------HHGGGGHHHHHHHHHHHHHG
T ss_pred HHH---------------------------HHHHHHHHH---------------------HHhhhHHHHHHHHHHHHHHH
Confidence 000 011111111 122 2467788999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH----HHHHHHHHHHH
Q 001018 910 VVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND----MIVDKIRVQMD 985 (1188)
Q Consensus 910 v~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e----~~~ekl~~~~~ 985 (1188)
+.|+.+.||-++...|..+....+. ..++|.|....+|++|.||..++..++.++...+++ .....+.|.+.
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~ 182 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV 182 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 9999999999999999999987763 468899999999999999999999999988776532 34578999999
Q ss_pred HHhcCCChhHHHHHHHHHHHhcccCCHHHH
Q 001018 986 AFLEDGSHEATVAVVRALAVAVPHTTERLR 1015 (1188)
Q Consensus 986 slL~D~~~~vR~~vv~al~~l~p~~~~~~r 1015 (1188)
.+++|+++.+|-++..+++.++..++.+.+
T Consensus 183 ~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 183 KTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 999999999999999999999988887643
No 31
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=9.8e-08 Score=102.63 Aligned_cols=135 Identities=8% Similarity=0.016 Sum_probs=101.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc--hhhHhhHHHHHHHHhh-cCchhHHHHHHHHHHHHHhhhChhh--hhh
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVGE--MRTEMELLPQCWEQIN-HMYEERRLLVAQSCGELAEFVRPEI--RDS 579 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~--ert~~ELLP~l~eli~-Dd~dEVRlLvAescg~La~~vg~e~--r~s 579 (1188)
.-|+..+.+.+..+|+.++..+..++...+. .....++++.+...+. |....||..++.++|.|+..+|+.. +..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3467778889999999999999988876322 1223578888888884 8888899999999999998887753 445
Q ss_pred hhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 580 LILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 580 lLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.++|.+...+.|+...||+++...|..++..++ +..+.+.+...+.+..+.||..++..+
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l 157 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFI 157 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 588888888889999999999999888887553 345666666666666666666664443
No 32
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.87 E-value=1.2e-05 Score=101.28 Aligned_cols=460 Identities=13% Similarity=0.131 Sum_probs=267.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCchhh------HhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh--hChhhhhhhh
Q 001018 510 LIKRPDEKQRRIIMDACVTLAKNVGEMRT------EMELLPQCWEQINHMYEERRLLVAQSCGELAEF--VRPEIRDSLI 581 (1188)
Q Consensus 510 LiKdddp~vRr~aa~~l~~iA~~lg~ert------~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~--vg~e~r~slL 581 (1188)
...+++..-...++.++..++. |+-.. .+..+|.+-.++.++.+.++..+++.++..+.- ...-....-+
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~--g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLN--GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHS--SSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhc--CCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 3455666666767777776664 33222 335678888888888999999999999986632 2222333344
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc--------hhhhhHHHHHHHhccCC--ChhHHHHHHHhhHHHHHhcc
Q 001018 582 LSIVQQLVEDSATVVREAAARNLALLLPLFPNT--------DKYFKVEDLMFQLVCDP--SGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 582 L~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~--------d~~~qi~~~f~~Ll~D~--s~~Vr~aa~~~Llpala~~~ 651 (1188)
|+|..|...+...||.-|+-.|++++...+.+ ....++.+.|..++.++ ..+|+..|+..| +|....
T Consensus 333 -~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaL--ayLS~~ 409 (810)
T 3now_A 333 -DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL--AYLTLD 409 (810)
T ss_dssp -HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHH--HHHTTS
T ss_pred -HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HHHhCC
Confidence 99999988888999999999999998543211 12356789999999988 788998887776 222211
Q ss_pred cchH-HHH--HHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 001018 652 SKLD-HIL--RVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEV-LLRMMAELLPFMQKNAIETCPFSSVSLS 727 (1188)
Q Consensus 652 ~~~~-~ll--~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~-~l~~l~~LLP~i~~~l~~~~pf~s~~qd 727 (1188)
.+.. .+. ..+++.|+.-++. .+. .+.+ .+.++.. +.... +.+
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s-------------------~d~--~i~~~al~~L~N--------Lt~~~----d~q- 455 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARG-------------------GNQ--SCLYGVVTTFVN--------LCNAY----EKQ- 455 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHT-------------------TCG--GGHHHHHHHHHH--------HTTCS----CCC-
T ss_pred cHHHHHHHHccchHHHHHHHhCC-------------------CCh--HHHHHHHHHHHH--------HcCCc----hhh-
Confidence 1111 111 1233443322110 000 0001 0111111 11100 001
Q ss_pred cccccc-hhhhhhhhcCCCCccc-------------hhhHHh-hhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCH
Q 001018 728 EETVFP-SSLLELYAGGHIEWPA-------------FEWMHV-DCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGD 792 (1188)
Q Consensus 728 ~evrl~-~~ll~l~~~~~~~w~~-------------~~wl~~-~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~ 792 (1188)
...+ ...+..|.+.. .++ .+.+.+ -.+|.++++. ...+-.||..++..+..||.. .
T Consensus 456 --~~~~~l~~la~~s~~~--v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL---~s~s~~vqe~Aa~aL~NLA~d--~ 526 (810)
T 3now_A 456 --EMLPEMIELAKFAKQH--IPEEHELDDVDFINKRITVLANEGITTALCALA---KTESHNSQELIARVLNAVCGL--K 526 (810)
T ss_dssp --CCCCSCGGGTTTTCCS--CCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH---TCCCHHHHHHHHHHHHHHHTS--H
T ss_pred --hhhHHHHHHHHHhhcc--CccccccccHHHHHHHHHHHHHCcCHHHHHHHH---cCCCHHHHHHHHHHHHHHcCC--H
Confidence 0010 01111111110 000 112222 3789999997 567789999999999999842 2
Q ss_pred HH----HHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHH
Q 001018 793 SY----LTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLL 868 (1188)
Q Consensus 793 e~----t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt 868 (1188)
+. ...-.+|.++.+|++.... +.+ ....-|.+++
T Consensus 527 ~~r~~Vv~~Gaip~Lv~LL~s~~~~--------------------~k~----------------------~Aa~AL~nL~ 564 (810)
T 3now_A 527 ELRGKVVQEGGVKALLRMALEGTEK--------------------GKR----------------------HATQALARIG 564 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHH--------------------HHH----------------------HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHccCCHH--------------------HHH----------------------HHHHHHHHHh
Confidence 22 1223567777777543210 000 0011223332
Q ss_pred hhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh---hchhhhhhhhhhH
Q 001018 869 VEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSS-NIDMKINAANLLKVIVPY---INAKVTSMQVLPA 944 (1188)
Q Consensus 869 ~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~-~pnVR~naak~L~~L~~~---ig~~~ls~~VlPa 944 (1188)
.... |+.+ ++. ... ..++|-|++++.++ ....++.++..|.-|+.. .-...+....+|.
T Consensus 565 ~~~~----------p~~~-----~~~-~~~-~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 565 ITIN----------PEVS-----FSG-QRS-LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp HHSC----------HHHH-----TTT-HHH-HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred cCCC----------hhhh-----hcc-hhh-hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 2100 1000 000 111 22678888888754 556678888888888754 2334666788999
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHHhh-chHHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH---HHHH--
Q 001018 945 LVTLGSDQNLNVKYASIDAFGAVAQHF-KNDMIV--DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE---RLRD-- 1016 (1188)
Q Consensus 945 Lv~LasD~d~dVR~aaieAl~~LA~~l-~~e~~~--ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~---~~r~-- 1016 (1188)
|+.|..+++..||.++..++.-|+..- ....+. ....+.+..++..++..++.+++.+|+-+....+. .+++
T Consensus 628 Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~ 707 (810)
T 3now_A 628 IEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA 707 (810)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTST
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 999999999999999999999888631 112333 24667788889888999999999999999864222 2333
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHHhccCCCCh
Q 001018 1017 YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDP 1082 (1188)
Q Consensus 1017 ~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~ 1082 (1188)
-.+|.|..|...++. .-|...+.++..+... .......++..-.+|.|..|+++.|.=++
T Consensus 708 g~I~~Lv~LL~s~d~----~vq~~A~~aL~NL~~~--s~e~~~~l~e~G~i~~L~~LL~~~d~~~~ 767 (810)
T 3now_A 708 SWLDILHTLIANPSP----AVQHRGIVIILNMINA--GEEIAKKLFETDIMELLSGLGQLPDDTRA 767 (810)
T ss_dssp THHHHHHHHHTCSSH----HHHHHHHHHHHHHHTT--CHHHHHHHHTSTHHHHHTTSCCCTTSTTH
T ss_pred CCHHHHHHHHCCCCH----HHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHHHhCcccCcH
Confidence 377888888876654 2243444444333221 11234557777889999999886553333
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.84 E-value=5.8e-08 Score=106.01 Aligned_cols=239 Identities=17% Similarity=0.149 Sum_probs=153.2
Q ss_pred hhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhh
Q 001018 757 CFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGER 836 (1188)
Q Consensus 757 lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~ 836 (1188)
-+|.++++. .|.++.||..++..+..+. ....+|.++.+|.|.... +|. .....
T Consensus 24 ~i~~L~~~L---~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~--vR~-------------~A~~a 77 (280)
T 1oyz_A 24 NDDELFRLL---DDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYI--RRD-------------IGAFI 77 (280)
T ss_dssp CHHHHHHHT---TCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHH--HHH-------------HHHHH
T ss_pred hHHHHHHHH---HcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHH--HHH-------------HHHHH
Confidence 466677764 8999999999999888764 234678888999886421 122 11111
Q ss_pred hhhhchhhHHhhhhcCCCCc-chhhhHHHHH-HHhhcccccccccchhhhHHHHHHhhhc-hhhHHHhHHHHHHHhhcCC
Q 001018 837 LATMGVLPLLLAGVLGAPSK-HDQLADYLRK-LLVEGTMKENHTVKCNAEIVNAVRFLCT-FEEHHTMVFNILWEMVVSS 913 (1188)
Q Consensus 837 l~~~~lLP~il~gVL~~~~~-~~~l~nyL~r-Lt~~~s~~~~W~v~~~p~ll~ai~~Lg~-~e~~~~~iLpiL~~lv~D~ 913 (1188)
+ +-++.... -..+...|.+ +.. +.+|.+ +.. .+.++..+|. .......++|.|..++.|+
T Consensus 78 L-----------~~l~~~~~~~~~l~~~L~~~~~~----d~~~~v-r~~-a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~ 140 (280)
T 1oyz_A 78 L-----------GQIKICKKCEDNVFNILNNMALN----DKSACV-RAT-AIESTAQRCKKNPIYSPKIVEQSQITAFDK 140 (280)
T ss_dssp H-----------HHSCCCTTTHHHHHHHHHHHHHH----CSCHHH-HHH-HHHHHHHHHHHCGGGHHHHHHHHHHHTTCS
T ss_pred H-----------HHhccccccchHHHHHHHHHHhc----CCCHHH-HHH-HHHHHHHHhccCCcccHHHHHHHHHHhhCC
Confidence 1 11111000 0001112221 111 122334 221 2445444442 2234567899999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCh
Q 001018 914 NIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSH 993 (1188)
Q Consensus 914 ~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~ 993 (1188)
.|.||..++..|..+.. ...+|.|..+.+|+++.||..++.+++.+.. .. ..+.+.+..++.|+++
T Consensus 141 ~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~----~~~~~~L~~~l~d~~~ 206 (280)
T 1oyz_A 141 STNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININKY--DN----SDIRDCFVEMLQDKNE 206 (280)
T ss_dssp CHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--CC----HHHHHHHHHHTTCSCH
T ss_pred CHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc--Cc----HHHHHHHHHHhcCCCH
Confidence 99999999999987653 3589999999999999999999999987631 12 3456777788999999
Q ss_pred hHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHH
Q 001018 994 EATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNL 1073 (1188)
Q Consensus 994 ~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L 1073 (1188)
.+|..++.+|+.+. ++. .+|.|..+..-+.+ |...+.+|.. +.. ..++|.|..+
T Consensus 207 ~vR~~A~~aL~~~~---~~~----~~~~L~~~l~d~~v------r~~a~~aL~~----i~~---------~~~~~~L~~~ 260 (280)
T 1oyz_A 207 EVRIEAIIGLSYRK---DKR----VLSVLCDELKKNTV------YDDIIEAAGE----LGD---------KTLLPVLDTM 260 (280)
T ss_dssp HHHHHHHHHHHHTT---CGG----GHHHHHHHHTSSSC------CHHHHHHHHH----HCC---------GGGHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CHh----hHHHHHHHhcCccH------HHHHHHHHHh----cCc---------hhhhHHHHHH
Confidence 99999999999997 333 45555555555666 7666444433 321 2578999998
Q ss_pred HhccC
Q 001018 1074 LKDAD 1078 (1188)
Q Consensus 1074 ~~D~d 1078 (1188)
++|.+
T Consensus 261 l~~~~ 265 (280)
T 1oyz_A 261 LYKFD 265 (280)
T ss_dssp HTTSS
T ss_pred HhcCC
Confidence 87643
No 34
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.80 E-value=7.8e-05 Score=95.81 Aligned_cols=181 Identities=12% Similarity=0.163 Sum_probs=108.6
Q ss_pred hhcCC---ChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc----------hHH
Q 001018 909 MVVSS---NIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK----------NDM 975 (1188)
Q Consensus 909 lv~D~---~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~----------~e~ 975 (1188)
.+.|+ .|-||..++..+.++.+.+..+ .-..++|.+.....|++..||.++..||..+++... .+.
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 34566 9999999999999999988654 457789999988889999999999999999887421 222
Q ss_pred ---HHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHHhcccCCHH---HHHHHHHHHHHhhc--CCCCChhhHHHHHHH
Q 001018 976 ---IVDKIRVQMDAFLEDGS-----HEATVAVVRALAVAVPHTTER---LRDYLLSKIFQLSA--VPSSSSDVMRRRERA 1042 (1188)
Q Consensus 976 ---~~ekl~~~~~slL~D~~-----~~vR~~vv~al~~l~p~~~~~---~r~~IlP~L~~L~~--vpN~~~~~~~R~~vA 1042 (1188)
+.+.+...+..++.... ......++.++..++..++.. +...+.|.|..+.. ..|. .+ ..+ .
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~-~~--~~~--~ 616 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP-SN--PRF--T 616 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC-CC--HHH--H
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC-CC--cHH--H
Confidence 33555555555555431 001124445555444333222 33345555544433 1221 11 122 1
Q ss_pred HHHHHHHHhhccc--cCchhhhhhhHHHHHHH-HHhccCCCChHHHHHHHHHHhhc
Q 001018 1043 NAFCESIRALDAT--ELSATSVRDFLLPAIQN-LLKDADSLDPAHKEALEIIMKDR 1095 (1188)
Q Consensus 1043 k~l~~a~~aL~~~--~l~~~~v~~~ilP~L~~-L~~D~d~l~~~~k~~l~~i~ke~ 1095 (1188)
..+++++.++... .-.-..+.+.+.|.+.. |.+|...+.|.--+.+..+++-.
T Consensus 617 ~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 2345555554422 11223456677888777 55555667777777777777544
No 35
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.76 E-value=5.7e-05 Score=96.82 Aligned_cols=547 Identities=11% Similarity=0.073 Sum_probs=266.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC------chhHHHHHHHHHHHHHhhh
Q 001018 499 TRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM------YEERRLLVAQSCGELAEFV 572 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd------~dEVRlLvAescg~La~~v 572 (1188)
.|+.|+..+.....+ .+.+|..+...++.|++...+ .+.+++|.+....+.. ....+..+.+-+..+.+-+
T Consensus 83 ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 83 LKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHH
Confidence 344444444444423 489999999999999999888 7889999998876542 3456666666666555311
Q ss_pred C---hh-----------hhhhhhHHHHHHhhcCC--------cHHHHHHHHHHHHhhcc--cCCCchhhhhHHHHHHHhc
Q 001018 573 R---PE-----------IRDSLILSIVQQLVEDS--------ATVVREAAARNLALLLP--LFPNTDKYFKVEDLMFQLV 628 (1188)
Q Consensus 573 g---~e-----------~r~slLL~~LqqL~eD~--------e~~VR~aAAksL~~l~~--~l~~~d~~~qi~~~f~~Ll 628 (1188)
. .. .....+++.+.++.++. .|.||.++.+++..+.. -++.. ....+.+.++. +
T Consensus 160 ~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L 237 (971)
T 2x1g_F 160 QVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-V 237 (971)
T ss_dssp HHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-H
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-h
Confidence 0 00 11234666676644321 24899999999988777 45554 55567776665 3
Q ss_pred ----------------cCCChhHHHHHHHhhHHHHHhccc-chHHHHHHHHHHHhhhhccC-----CCcc---ccchhhh
Q 001018 629 ----------------CDPSGVVVETTFKELLPAVINWGS-KLDHILRVLLSYILSSAQRC-----PPLS---GVEGSVE 683 (1188)
Q Consensus 629 ----------------~D~s~~Vr~aa~~~Llpala~~~~-~~~~ll~~ll~~L~~~v~~l-----p~~~---~v~~~la 683 (1188)
.++.++++.+|+..+...+.+-.. +....+..+++.++...... ..+. .+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 317 (971)
T 2x1g_F 238 VHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIY 317 (971)
T ss_dssp HHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHH
T ss_pred hhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHH
Confidence 235678999998887444432110 11123344444443211100 0010 1111122
Q ss_pred hhhhhhhhhhhhhHHHHH-----------HHHHHHHHHHHHHHhhhCCCCCCCCCccccc-c----hhhhhhhh------
Q 001018 684 SHLRVLGERERWNLEVLL-----------RMMAELLPFMQKNAIETCPFSSVSLSEETVF-P----SSLLELYA------ 741 (1188)
Q Consensus 684 ~~l~~Lg~d~sWrV~~~l-----------~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl-~----~~ll~l~~------ 741 (1188)
..+..+++.. ...+. ..+..+++.++.... .|-.... +.+++. . ..+.+.+.
T Consensus 318 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~~~~~~-~~~v~~~~l~fw~~l~~~~~~~~~~~ 391 (971)
T 2x1g_F 318 MLFVSSVERH---STLLLSGITSADPELSILVHRIVQEILHCTD--KPGIYPV-EESCSTMALAFWYMLQDEVFAMSNDE 391 (971)
T ss_dssp HHHHHHHHHT---HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH--CSSCTTT-TCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHH---HHHHHHHhccCcccccHHHHHHHHHHHHHHc--CCCCCCc-chhhhHHHHHHHHHHHHHHHhccccc
Confidence 2112233221 01111 123334443333211 1100011 111221 1 11111010
Q ss_pred cCCCCccchhhHHhhhhHHHHHhhccCCCC---cH---------HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCC
Q 001018 742 GGHIEWPAFEWMHVDCFPGLIQLACLLPEK---ED---------NLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGD 809 (1188)
Q Consensus 742 ~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~---sW---------rVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D 809 (1188)
+....|..+.-....+++.++.-...-+|. .| ..|.++++.+..+|..+|.+.+ ..+.+.+...+..
T Consensus 392 ~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l-~~~~~~l~~~l~~ 470 (971)
T 2x1g_F 392 QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYIL-EILAAMLDEAIAD 470 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHh
Confidence 000011111223333444444433211121 11 4677777777777777773222 2222332222210
Q ss_pred ccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHH
Q 001018 810 NANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAV 889 (1188)
Q Consensus 810 ~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai 889 (1188)
| . +...+|+.-.++ +.++
T Consensus 471 -----------------------------------------------------~----~---~~~~~w~~~eaa--l~~l 488 (971)
T 2x1g_F 471 -----------------------------------------------------L----Q---RHPTHWTKLEAC--IYSF 488 (971)
T ss_dssp -----------------------------------------------------H----H---HCTTCCHHHHHH--HHHH
T ss_pred -----------------------------------------------------c----c---CCCCcHHHHHHH--HHHH
Confidence 0 0 000234442332 4444
Q ss_pred Hhhhc-----hhhHHHhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhhchh-hhhhhhhhHHHhhccCCCcchHHHHHH
Q 001018 890 RFLCT-----FEEHHTMVFNILWEMV-VSSNIDMKINAANLLKVIVPYINAK-VTSMQVLPALVTLGSDQNLNVKYASID 962 (1188)
Q Consensus 890 ~~Lg~-----~e~~~~~iLpiL~~lv-~D~~pnVR~naak~L~~L~~~ig~~-~ls~~VlPaLv~LasD~d~dVR~aaie 962 (1188)
..++. .......+++++..+. .|+.|-||..++..+.++.+.++.. ..-..++|.|.... | .+|+.++..
T Consensus 489 ~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 489 QSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 33321 1233455677666665 3679999999999999999887643 23456777777654 4 789999999
Q ss_pred HHHHHHHhhchHH--HHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhcccCC----HHHHH-HHHHHHHHhhc---CCC
Q 001018 963 AFGAVAQHFKNDM--IVDKIRVQMDAFLEDG--SHEATVAVVRALAVAVPHTT----ERLRD-YLLSKIFQLSA---VPS 1030 (1188)
Q Consensus 963 Al~~LA~~l~~e~--~~ekl~~~~~slL~D~--~~~vR~~vv~al~~l~p~~~----~~~r~-~IlP~L~~L~~---vpN 1030 (1188)
|+..+++.++... +.+.+...+...+..+ ....+..+..+++.++..++ ..+.. .+-|.+..+.. .+.
T Consensus 566 al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 645 (971)
T 2x1g_F 566 GLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADS 645 (971)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998877542 3455666666666653 46899999999999987665 23333 33344433333 221
Q ss_pred CChhhHHHHHHH---HHHHHHHHhhcccc----------CchhhhhhhHHHHHHHHHhccCCCChHHHHHH---HHHHhh
Q 001018 1031 SSSDVMRRRERA---NAFCESIRALDATE----------LSATSVRDFLLPAIQNLLKDADSLDPAHKEAL---EIIMKD 1094 (1188)
Q Consensus 1031 ~~~~~~~R~~vA---k~l~~a~~aL~~~~----------l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l---~~i~ke 1094 (1188)
. +...+..++ ..+..+++++.... -.-..+.+.++|.+..++.+...-++-.+.+. ..|++-
T Consensus 646 ~--~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 646 K--TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred C--ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 1 111233332 34444555444210 01123456788988887764322112233322 222222
Q ss_pred cc---CCchhhhhhhh---------hhhccccccccccccCC
Q 001018 1095 RS---GGTLETISKVM---------GAHLGITSSVTSFFGGG 1124 (1188)
Q Consensus 1095 ~~---~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 1124 (1188)
+. +.-+..+...| +.-+++++.+..-||..
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-
T ss_pred hhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCC
Confidence 21 11123332222 45577777777677663
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.70 E-value=2.8e-06 Score=104.31 Aligned_cols=442 Identities=9% Similarity=0.043 Sum_probs=239.4
Q ss_pred CCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhC
Q 001018 494 HPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVR 573 (1188)
Q Consensus 494 h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg 573 (1188)
+.++...--.++.|.+-++|++|.+|-.|+..++.|+ .......++|.+...+.|..+.||-.++-+++.+....
T Consensus 99 ~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~- 173 (618)
T 1w63_A 99 DERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV- 173 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-
Confidence 4445445567788999999999999999999998886 33445678898999999999999999999999998753
Q ss_pred hhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCC-chhhhhHHHHHHHhccC---------------CChhHHH
Q 001018 574 PEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPN-TDKYFKVEDLMFQLVCD---------------PSGVVVE 637 (1188)
Q Consensus 574 ~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~-~d~~~qi~~~f~~Ll~D---------------~s~~Vr~ 637 (1188)
++.- ..+++.++.+..|+.+.|+.+|+..|..++..-++ ...+..+.|.+..++++ +++-...
T Consensus 174 p~~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 174 PELM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp GGGG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred hHHH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 3322 35688889999999999999999999999864221 12355566666665553 2333333
Q ss_pred HHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccc----cchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001018 638 TTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSG----VEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQK 713 (1188)
Q Consensus 638 aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~----v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~ 713 (1188)
..++.+ ..++.-.......+..++..++.. +....+ |.-.....+-.++.... .....++.+..
T Consensus 253 ~il~~L-~~l~~~~~~~~~~~~~~L~~l~~~---~~~~~~~~~aV~~ea~~~i~~l~~~~~--------l~~~a~~~L~~ 320 (618)
T 1w63_A 253 RILRLL-RILGRNDDDSSEAMNDILAQVATN---TETSKNVGNAILYETVLTIMDIKSESG--------LRVLAINILGR 320 (618)
T ss_dssp HHHHHH-HHHTTTCHHHHHTTHHHHHHHHHT---SCCSSTHHHHHHHHHHHHHHHSCCCHH--------HHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHHHHhc---cccccchHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHH
Confidence 333333 333332111111111233333221 111011 10000000001111110 01111121222
Q ss_pred HHhhhCCCCCCCCCccccc-chhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCH
Q 001018 714 NAIETCPFSSVSLSEETVF-PSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGD 792 (1188)
Q Consensus 714 ~l~~~~pf~s~~qd~evrl-~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~ 792 (1188)
.+. ..++.+++ ....+..+... .. .+....++.+..+ +.|....||....+.+..++..=..
T Consensus 321 ~L~--------~~d~~vr~~aL~~L~~i~~~-----~p-~~~~~~~~~i~~~---l~d~d~~Ir~~alelL~~l~~~~nv 383 (618)
T 1w63_A 321 FLL--------NNDKNIRYVALTSLLKTVQT-----DH-NAVQRHRSTIVDC---LKDLDVSIKRRAMELSFALVNGNNI 383 (618)
T ss_dssp HHT--------CSSTTTHHHHHHHHHHHHHH-----HH-HHHGGGHHHHHHG---GGSSCHHHHHHHHHHHHHHCCSSST
T ss_pred HHh--------CCCCchHHHHHHHHHHHHhh-----CH-HHHHHHHHHHHHH---ccCCChhHHHHHHHHHHHHcccccH
Confidence 111 12344444 21111111000 00 1223344555555 3778888999999988888764332
Q ss_pred HHHHHHHHHHHHHHhCCc-cccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhc
Q 001018 793 SYLTHIMLPVFMVAVGDN-ANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEG 871 (1188)
Q Consensus 793 e~t~~~LlP~fl~lL~D~-~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~ 871 (1188)
+ .+++.++..+.+. .++ |. .+...+...+. . .+ .....|+..+...+
T Consensus 384 ~----~iv~eL~~~l~~~d~e~---r~-------------~~v~~I~~la~------k-~~-----~~~~~~v~~ll~lL 431 (618)
T 1w63_A 384 R----GMMKELLYFLDSCEPEF---KA-------------DCASGIFLAAE------K-YA-----PSKRWHIDTIMRVL 431 (618)
T ss_dssp H----HHHHHHHHHHHHCCHHH---HH-------------HHHHHHHHHHH------S-SC-----CCHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHhCCHHH---HH-------------HHHHHHHHHHH------H-hC-----ccHHHHHHHHHHHH
Confidence 2 2344445555432 211 21 11111111110 0 00 00122444333322
Q ss_pred ccccccccchhhhHHHHHHhh-hchhhHHHhHHHHHHHhhcC---CChhHHHHHHHHHHHHHhhhchh---------hhh
Q 001018 872 TMKENHTVKCNAEIVNAVRFL-CTFEEHHTMVFNILWEMVVS---SNIDMKINAANLLKVIVPYINAK---------VTS 938 (1188)
Q Consensus 872 s~~~~W~v~~~p~ll~ai~~L-g~~e~~~~~iLpiL~~lv~D---~~pnVR~naak~L~~L~~~ig~~---------~ls 938 (1188)
...+.+.. .+++.++..+ ...+..+..+++.+++.+.+ ..+.+| .++-.++..+..+... ...
T Consensus 432 ~~~~~~v~---~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~ 507 (618)
T 1w63_A 432 TTAGSYVR---DDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTE 507 (618)
T ss_dssp HHTGGGSC---SSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCH
T ss_pred HhccchhH---HHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhHHHhcccccccccccCCCH
Confidence 22222222 1224444333 34456667777788887764 245555 4777777776655321 112
Q ss_pred hhhhhHHHhhcc--CCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 001018 939 MQVLPALVTLGS--DQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 939 ~~VlPaLv~Las--D~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
..+.+.|..+.+ +.+..||.+++-|+..+...... ..+.+...+..+..|.+..+|--+...+.-+..
T Consensus 508 ~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 508 DEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 345566666654 56889999999999888877643 245566667777888888888888887776653
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.67 E-value=5.3e-05 Score=97.37 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=84.1
Q ss_pred CCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhcc------CCCcchHHHHHHHHHHHHHhh-----chH------
Q 001018 912 SSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGS------DQNLNVKYASIDAFGAVAQHF-----KND------ 974 (1188)
Q Consensus 912 D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~Las------D~d~dVR~aaieAl~~LA~~l-----~~e------ 974 (1188)
+...++|-++...|..++..++ +.+...++|.+.+..+ +++|..|.+++.+++.++... +..
T Consensus 372 ~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 372 SDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred ccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 4456899999999999999998 5566677887776554 789999999999999998642 111
Q ss_pred HHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcCCC
Q 001018 975 MIVDKIRVQMDAFLEDG---SHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPS 1030 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~---~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~vpN 1030 (1188)
.+..-+...+...+.|+ ++.+|..++.+++++...+.++....++|.+.....-++
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~ 509 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE 509 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC
Confidence 12221222333445677 889999999999999999888776678887776655444
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.64 E-value=7.3e-05 Score=94.28 Aligned_cols=385 Identities=10% Similarity=0.060 Sum_probs=222.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhC-----ch---hhHhhHHHHHHHHhhcC--chhHHHHHHHHHHHHHhh--h
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVG-----EM---RTEMELLPQCWEQINHM--YEERRLLVAQSCGELAEF--V 572 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg-----~e---rt~~ELLP~l~eli~Dd--~dEVRlLvAescg~La~~--v 572 (1188)
..|..+++.+++.+|..++-+|..++..-+ +. -.-..|+|.|..++.+. .+++|-.+++.+..|... +
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 788889999999999999888888875332 11 12356899998877776 788999999999988743 3
Q ss_pred Chhhhh-hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccC------------CChhHHHHH
Q 001018 573 RPEIRD-SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCD------------PSGVVVETT 639 (1188)
Q Consensus 573 g~e~r~-slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D------------~s~~Vr~aa 639 (1188)
...... .-.+|.|-.|++.+...|.+.|+..|..|+..-+......++ ..|.+- ..+.|+.-+
T Consensus 413 k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l----~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM----IELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC----GGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH----HHHHHHhhccCccccccccHHHHHHHH
Confidence 333332 346888888888788899999999999998743322111010 111110 011222111
Q ss_pred HH----hhHHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001018 640 FK----ELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNA 715 (1188)
Q Consensus 640 ~~----~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l 715 (1188)
.. -.+|.+..++..... ..-++..|- + .. +
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~-------------------------------~vqe~Aa~a-------L-------~N-L 522 (810)
T 3now_A 489 TVLANEGITTALCALAKTESH-------------------------------NSQELIARV-------L-------NA-V 522 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCH-------------------------------HHHHHHHHH-------H-------HH-H
T ss_pred HHHHHCcCHHHHHHHHcCCCH-------------------------------HHHHHHHHH-------H-------HH-H
Confidence 00 011222222111000 000000000 0 00 0
Q ss_pred hhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 001018 716 IETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYL 795 (1188)
Q Consensus 716 ~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t 795 (1188)
. . +++.+ -..+..-.+|.++.+. ......+|..++..+..||..-.++..
T Consensus 523 A------~---d~~~r------------------~~Vv~~Gaip~Lv~LL---~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 523 C------G---LKELR------------------GKVVQEGGVKALLRMA---LEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp H------T---SHHHH------------------HHHHHTTHHHHHHHHH---HSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred c------C---CHHHH------------------HHHHHCCCHHHHHHHH---ccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 0 0 00000 0001122556666664 344556777778888877754333221
Q ss_pred -----HHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhh
Q 001018 796 -----THIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVE 870 (1188)
Q Consensus 796 -----~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~ 870 (1188)
....+|.++.+|..+... ++.+ +...-|..|+..
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~-----------------------------l~~~------------eAl~AL~NLa~~ 611 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTA-----------------------------LENF------------ESLMALTNLASM 611 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCH-----------------------------HHHH------------HHHHHHHHHTTS
T ss_pred hcchhhhcHHHHHHHHhCCCCcH-----------------------------HHHH------------HHHHHHHHHhcC
Confidence 123567777777422100 0000 000011112110
Q ss_pred cccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch--hhhh-hhhhhHHHh
Q 001018 871 GTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA--KVTS-MQVLPALVT 947 (1188)
Q Consensus 871 ~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~--~~ls-~~VlPaLv~ 947 (1188)
.++... .......+|.|.+++.++.+.||-+++..+..|+..-+. ..+. ...+|.|+.
T Consensus 612 -----------~d~~~~--------~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~ 672 (810)
T 3now_A 612 -----------NESVRQ--------RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL 672 (810)
T ss_dssp -----------CHHHHH--------HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHH
T ss_pred -----------CHHHHH--------HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHH
Confidence 000000 112235689999999999999999999999998753211 1222 468899999
Q ss_pred hccCCCcchHHHHHHHHHHHHHh--hchHHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCC---HHHHH-HHH
Q 001018 948 LGSDQNLNVKYASIDAFGAVAQH--FKNDMIV--DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTT---ERLRD-YLL 1019 (1188)
Q Consensus 948 LasD~d~dVR~aaieAl~~LA~~--l~~e~~~--ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~---~~~r~-~Il 1019 (1188)
|...++..||.++.-||..|+.. -....+. ....+.+..+|.+++..++..++.++..++-.-+ ..+.+ -++
T Consensus 673 LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i 752 (810)
T 3now_A 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIM 752 (810)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 99999999999999999999873 1223343 4677888899999999999999999999876422 12333 478
Q ss_pred HHHHHhhcCC
Q 001018 1020 SKIFQLSAVP 1029 (1188)
Q Consensus 1020 P~L~~L~~vp 1029 (1188)
|.|..|...+
T Consensus 753 ~~L~~LL~~~ 762 (810)
T 3now_A 753 ELLSGLGQLP 762 (810)
T ss_dssp HHHTTSCCCT
T ss_pred HHHHHHHhCc
Confidence 8888887644
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.61 E-value=5.2e-05 Score=93.29 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=89.7
Q ss_pred chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc-hhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHHhh
Q 001018 894 TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN-AKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 894 ~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig-~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~~l 971 (1188)
.+..+...+.+.|..++.++.||+|+.+...|..++..-+ .+.+ +...+.+..... |+|..||..+++.+-.++..-
T Consensus 322 ~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~ 400 (621)
T 2vgl_A 322 SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS 400 (621)
T ss_dssp CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh
Confidence 3455566778888888889999999999999999987654 2344 344566666445 999999999888877666432
Q ss_pred chHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCC---HHHHHHHHHHH
Q 001018 972 KNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTT---ERLRDYLLSKI 1022 (1188)
Q Consensus 972 ~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~---~~~r~~IlP~L 1022 (1188)
+ .+.|...+..++.+.+..+|..++++++.++.... .++++.++..+
T Consensus 401 N----v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll 450 (621)
T 2vgl_A 401 N----AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLI 450 (621)
T ss_dssp H----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 2 35566677777888889999999999999875443 34444444433
No 40
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.61 E-value=0.00089 Score=85.50 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=82.7
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh-hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH-
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK-VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM- 975 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~-~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~- 975 (1188)
....+++.+..+. ++.|.||..++..+.+..+.+... ..-..++|.|.....| .+||..+..||..++..++...
T Consensus 487 ~l~~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 487 VVPGLIGLIPRIS-ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp HHHHHHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666555444 357889999999999999887642 3456788888876665 7999999999999998776542
Q ss_pred -HHHHHHHHHHHHhcC--CChhHHHHHHHHHHHhcccCC
Q 001018 976 -IVDKIRVQMDAFLED--GSHEATVAVVRALAVAVPHTT 1011 (1188)
Q Consensus 976 -~~ekl~~~~~slL~D--~~~~vR~~vv~al~~l~p~~~ 1011 (1188)
+.+.+...+..++.. -....+..+..+++.++-.++
T Consensus 564 p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 564 PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 346666666666664 356889999999999987776
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.61 E-value=1.1e-06 Score=91.69 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=97.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
.+..+..+++++++.+|..++..++.+.. .+.+|.+.+.+.|..+.||..++..+|.+.. .-.+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 45667777889999999999999887642 3667888888899999999999999998752 2246
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+.|..+..|+.+.||.+|+..|+.+.. . +..+.+..++.|+++.||..++..|
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 788888899999999999999998863 2 5678888999999999999997665
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.60 E-value=9.2e-07 Score=92.34 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHH
Q 001018 902 VFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIR 981 (1188)
Q Consensus 902 iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~ 981 (1188)
.+|.|..++.|+.|.||..++..|..+.. ...+|.|..+.+|+++.||..++.+++.+.. ....
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 44555666666666666666666665532 2355666666666666666666666665532 1234
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 982 VQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 982 ~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
+.+..++.|+++.+|..++.+|+.+.
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44555666666666666666666664
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.56 E-value=2.4e-06 Score=88.46 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhh
Q 001018 499 TRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRD 578 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~ 578 (1188)
........++.+++++++.+|..++..++.+.. .+.+|.+.+.+.|..+.||..++..+|.+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 345677889999999999999999999987642 3567778888889999999999999988742
Q ss_pred hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 579 SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 579 slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.-.++.|..++.|+++.||.+|+..|+.+.. . +..+.+..++.|+++.||..++..+
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l~d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKALKDEDWFVRIAAAFAL 131 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1246788888999999999999999998753 2 4678888899999999999997665
No 44
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.49 E-value=4.7e-07 Score=97.80 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHH-HhhcCchhHHHHHHHHHHHHHhhhChhhhh
Q 001018 500 RDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWE-QINHMYEERRLLVAQSCGELAEFVRPEIRD 578 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~e-li~Dd~dEVRlLvAescg~La~~vg~e~r~ 578 (1188)
.+++..++..|.+++.++||..|+..++.. . ...++||++.. +.+|+.|.||..++..++.+....+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~----~---~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL----S---KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT----T---TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc----c---CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 666666666666666666666666533322 1 22556666665 6666666666666666666665444442
Q ss_pred hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 579 SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 579 slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+++.+...+.|++.-||++|++.+-..+...........+++++..|..|++..||.+.+-.|
T Consensus 140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp --THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred --HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 455666666666666666666665444432111122334666666666666666666554444
No 45
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.47 E-value=4.5e-08 Score=107.13 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=83.0
Q ss_pred hhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHH
Q 001018 484 LPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQ 563 (1188)
Q Consensus 484 lPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAe 563 (1188)
-|++++++..+... ..|..|++|+++.||..++.+ +++ +.+..+++|++++||..+|.
T Consensus 63 ~~~VR~~AA~~l~~-------~~l~~L~~D~~~~VR~~aA~~-------L~~--------~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 63 FWERRAIAVRYSPV-------EALTPLIRDSDEVVRRAVAYR-------LPR--------EQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp SHHHHHHHHTTSCG-------GGGGGGTTCSSHHHHHHHHTT-------SCS--------GGGGGTTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHHhCCH-------HHHHHHccCcCHHHHHHHHHH-------CCH--------HHHHHHHcCCCHHHHHHHHH
Confidence 47888777776643 358899999999999999975 332 23556789999999999999
Q ss_pred HHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHh
Q 001018 564 SCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKE 642 (1188)
Q Consensus 564 scg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~ 642 (1188)
.+ .. +.|..|++|+++.||.++|.++ +. +.+..|++|+++.||.+++..
T Consensus 121 ~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 121 RL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp HS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTTCSCHHHHHHHHHH
T ss_pred hC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHHcCCCHHHHHHHHHc
Confidence 53 21 2356789999999999999853 21 355689999999999999765
No 46
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.46 E-value=0.00049 Score=89.31 Aligned_cols=150 Identities=15% Similarity=0.051 Sum_probs=93.5
Q ss_pred ChhhHHHHHHHHHHhhc----CC-----CHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHH
Q 001018 496 DTSTRDSLTHTLFNLIK----RP-----DEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCG 566 (1188)
Q Consensus 496 ~~~~R~~Ll~ll~nLiK----dd-----dp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg 566 (1188)
++..|..++..+++.+. ++ ++.+|..++..++.||+.-.| ..+.+++|.+.+.++ ..+..+..+...+.
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~ 162 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLK 162 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 34455555544444443 33 488999999999999999877 457889999988776 33334444444555
Q ss_pred HHHhhhC--------h--------hhh--hhhhHHHHHHhhc-CCcHHHHHHHHHHHHhhcccCCCchhh-hhHHHHHH-
Q 001018 567 ELAEFVR--------P--------EIR--DSLILSIVQQLVE-DSATVVREAAARNLALLLPLFPNTDKY-FKVEDLMF- 625 (1188)
Q Consensus 567 ~La~~vg--------~--------e~r--~slLL~~LqqL~e-D~e~~VR~aAAksL~~l~~~l~~~d~~-~qi~~~f~- 625 (1188)
.+.+.+. . ..+ ...+++.+.++.+ ..+..||.++.+.+..+...++..... ..+.+.++
T Consensus 163 ~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~ 242 (1049)
T 3m1i_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLST 242 (1049)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHH
Confidence 5443322 1 011 1224555555443 346789999999998887777644221 34666666
Q ss_pred HhccCCChhHHHHHHHhhHHHHHh
Q 001018 626 QLVCDPSGVVVETTFKELLPAVIN 649 (1188)
Q Consensus 626 ~Ll~D~s~~Vr~aa~~~Llpala~ 649 (1188)
.++. .+.++.+|++.|.-.+.+
T Consensus 243 ~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 243 KFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHH--SHHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHhHHHHHHHHHHHHHhC
Confidence 3443 678888888887444443
No 47
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.38 E-value=3.3e-06 Score=91.27 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred HhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHH-hhcCCcHHHHHHHHHHHHhhcccCCCchhh
Q 001018 539 EMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQ-LVEDSATVVREAAARNLALLLPLFPNTDKY 617 (1188)
Q Consensus 539 ~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~Lqq-L~eD~e~~VR~aAAksL~~l~~~l~~~d~~ 617 (1188)
.+++++.+..+.+|++|+||++++..+|.+ . ....+|+.++. ++.|+.|+||+++++.+..+|...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 678889889999999999999999987776 3 22457999998 999999999999999999999755444
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 618 FKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 618 ~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
...+.|...++|++..||++|+..+
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 4678899999999999999999874
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.35 E-value=0.00016 Score=86.79 Aligned_cols=348 Identities=10% Similarity=0.051 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh---
Q 001018 499 TRDSLTHTLFNLIK-RPDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF--- 571 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiK-dddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~--- 571 (1188)
.+..++..|..+++ ++++.++..|+..+..||..-.. .-...-.+|.+-.++.+...+||..++.++|.|+..
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 44557788888885 56688999999999999863211 123344789999999999999999999999998742
Q ss_pred hChhhhhhhhHHHHHHhhcCCc-----HHHHHHHHHHHHhhcccCCCc---hhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 572 VRPEIRDSLILSIVQQLVEDSA-----TVVREAAARNLALLLPLFPNT---DKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 572 vg~e~r~slLL~~LqqL~eD~e-----~~VR~aAAksL~~l~~~l~~~---d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
........-.+++|..++.+.. ..+.+.++..|..++..-.+. .....++|.+..|++++.++|+..++..|
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1112222335677777665432 345566777788777654332 23356788888888888888877664333
Q ss_pred HHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001018 644 LPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSS 723 (1188)
Q Consensus 644 lpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s 723 (1188)
..++. ..... .+.+
T Consensus 276 -~~l~~---~~~~~------------------------------------------------------~~~v-------- 289 (529)
T 3tpo_A 276 -SYLTD---GPNER------------------------------------------------------IEMV-------- 289 (529)
T ss_dssp -HHHHS---SCHHH------------------------------------------------------HHHH--------
T ss_pred -HHhhh---hhhhh------------------------------------------------------HHHH--------
Confidence 11110 00000 0000
Q ss_pred CCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHH-----HHH
Q 001018 724 VSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYL-----THI 798 (1188)
Q Consensus 724 ~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t-----~~~ 798 (1188)
....++|.++++. ...++.|+..++..+..++. |.+.. ...
T Consensus 290 -----------------------------~~~g~i~~Lv~lL---~~~~~~v~~~a~~aL~nl~~--~~~~~~~~i~~~g 335 (529)
T 3tpo_A 290 -----------------------------VKKGVVPQLVKLL---GATELPIVTPALRAIGNIVT--GTDEQTQKVIDAG 335 (529)
T ss_dssp -----------------------------HTTTCHHHHHHHH---TCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTT
T ss_pred -----------------------------HhccchHHHHHHh---cCCChhHHHHHHHHHHHHHc--cchHHHHHHhhcc
Confidence 0112344455553 55666777777777776653 22221 122
Q ss_pred HHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccc
Q 001018 799 MLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHT 878 (1188)
Q Consensus 799 LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~ 878 (1188)
.+|.+..+|.+.... + + .+....|..++..
T Consensus 336 ~l~~L~~LL~~~~~~-i--------------~---------------------------~~a~~aL~nl~~~-------- 365 (529)
T 3tpo_A 336 ALAVFPSLLTNPKTN-I--------------Q---------------------------KEATWTMSNITAG-------- 365 (529)
T ss_dssp GGGGHHHHTTCSSHH-H--------------H---------------------------HHHHHHHHHHHTS--------
T ss_pred cHHHHHHHHcCCCHH-H--------------H---------------------------HHHHHHHHHHhcc--------
Confidence 345555555432100 0 0 0000112222210
Q ss_pred cchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh----hhhhhhhhHHHhhccCCCc
Q 001018 879 VKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK----VTSMQVLPALVTLGSDQNL 954 (1188)
Q Consensus 879 v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~----~ls~~VlPaLv~LasD~d~ 954 (1188)
.+ .... ......++|.+..++.+..+.||..++..|..++..-+.+ ++..-++|.|..|.+.+|.
T Consensus 366 ---~~---~~~~-----~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 366 ---RQ---DQIQ-----QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp ---CH---HHHH-----HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred ---cH---HHHH-----HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 00 0000 1112458899999999999999999999999887654433 5567899999999999999
Q ss_pred chHHHHHHHHHHHHHh---hchH-HHHH---H--HHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 955 NVKYASIDAFGAVAQH---FKND-MIVD---K--IRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 955 dVR~aaieAl~~LA~~---l~~e-~~~e---k--l~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
.|+..++.+|..+... .+.. .+.. . ....++.+...++..|+-.+.+-+.+.-
T Consensus 435 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999999887653 3322 1111 1 1233444556666667666655555543
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.34 E-value=2.9e-06 Score=87.81 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHH
Q 001018 504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILS 583 (1188)
Q Consensus 504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~ 583 (1188)
...+..+++|+++.+|..++.+++.+. . .+.+|.+.+.++|+.+.||..++..+|.+.. .-.++
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 141 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIG----D----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 141 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC----c----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 344555667777777777777776653 2 2355556666677777777777777777642 12466
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 584 IVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 584 ~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
.|..++.|+++.||.+|+..|+.+. + .+..+.+..++.|+++.||.+|+..|
T Consensus 142 ~L~~~l~d~~~~vr~~A~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 142 PLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6777777777777777777777763 2 25667777777777777777775544
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.31 E-value=0.00054 Score=81.85 Aligned_cols=349 Identities=10% Similarity=0.067 Sum_probs=208.5
Q ss_pred hHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh---
Q 001018 499 TRDSLTHTLFNLIKR-PDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEF--- 571 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKd-ddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~--- 571 (1188)
.+...+..|..++++ +++.++..|+.+|..||..-.. .-++.-.+|.+-.++.+..++||..++.+++.|+..
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 344578889998874 5689999999999999862211 123334789999999999999999999999999742
Q ss_pred hChhhhhhhhHHHHHHhhcCC-----cHHHHHHHHHHHHhhcccCCCc---hhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 572 VRPEIRDSLILSIVQQLVEDS-----ATVVREAAARNLALLLPLFPNT---DKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 572 vg~e~r~slLL~~LqqL~eD~-----e~~VR~aAAksL~~l~~~l~~~---d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
........-.+++|..+.... ...+.+.++..|..++..-... .....++|.+..|+++...+|+..++..|
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111222223466777766543 2345666777788877654332 23456788888888888888887764433
Q ss_pred HHHHHhcccchHHHHHHHHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001018 644 LPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSS 723 (1188)
Q Consensus 644 lpala~~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s 723 (1188)
..+....... + +.+
T Consensus 257 ----~~L~~~~~~~---------------------------------------~---------------~~i-------- 270 (510)
T 3ul1_B 257 ----SYLTDGPNER---------------------------------------I---------------EMV-------- 270 (510)
T ss_dssp ----HHHTSSCHHH---------------------------------------H---------------HHH--------
T ss_pred ----HHHhhchhhh---------------------------------------H---------------HHH--------
Confidence 1111000000 0 000
Q ss_pred CCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHH-----
Q 001018 724 VSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHI----- 798 (1188)
Q Consensus 724 ~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~----- 798 (1188)
....++|.++++. ...++.|+..++..+..++. |.+.....
T Consensus 271 -----------------------------~~~g~i~~Lv~lL---~~~~~~v~~~al~aL~nl~~--~~~~~~~~i~~~g 316 (510)
T 3ul1_B 271 -----------------------------VKKGVVPQLVKLL---GATELPIVTPALRAIGNIVT--GTDEQTQKVIDAG 316 (510)
T ss_dssp -----------------------------HTTTCHHHHHHHH---TCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTT
T ss_pred -----------------------------Hhcccchhhhhhh---cCCChhhhhHHHHHHHHhhc--CCHHHHHHHhhcc
Confidence 0012344455553 55667777777777777653 22222221
Q ss_pred HHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccc
Q 001018 799 MLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHT 878 (1188)
Q Consensus 799 LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~ 878 (1188)
.+|.+..+|.+... .+ +......|..++..
T Consensus 317 ~l~~L~~LL~~~~~-------------------~v-----------------------~~~A~~aL~nl~a~-------- 346 (510)
T 3ul1_B 317 ALAVFPSLLTNPKT-------------------NI-----------------------QKEATWTMSNITAG-------- 346 (510)
T ss_dssp GGGGCC-CTTCSSH-------------------HH-----------------------HHHHHHHHHHHTTS--------
T ss_pred chHHHHHHhcCCCH-------------------HH-----------------------HHHHHHHHHHHHcC--------
Confidence 12222222221100 00 00000011111110
Q ss_pred cchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh----hhhhhhhhHHHhhccCCCc
Q 001018 879 VKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK----VTSMQVLPALVTLGSDQNL 954 (1188)
Q Consensus 879 v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~----~ls~~VlPaLv~LasD~d~ 954 (1188)
.+ .. ........++|.+..++.+..+.||..++..|..++..-..+ ++..-++|.|..|.+.+|.
T Consensus 347 ---~~---~~-----~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 347 ---RQ---DQ-----IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp ---CH---HH-----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred ---cH---HH-----HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 00 00 001122458899999999999999999999999887654433 5567899999999999999
Q ss_pred chHHHHHHHHHHHHHh---hchHH-H---HHH--HHHHHHHHhcCCChhHHHHHHHHHHHhcc
Q 001018 955 NVKYASIDAFGAVAQH---FKNDM-I---VDK--IRVQMDAFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 955 dVR~aaieAl~~LA~~---l~~e~-~---~ek--l~~~~~slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
.|+..++++|..+... .+... + .++ ....++.+...++..|+-.+.+-+.+.-+
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999887753 33321 1 111 23445666777777777777777666554
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.27 E-value=8.8e-05 Score=88.71 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=97.4
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh---chhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH--
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYI---NAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM-- 975 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~i---g~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~-- 975 (1188)
.++|.|..++.++.+.||..++..|..|+..- -..++...++|.|+.+.++.+++||..+..||..++.....+.
T Consensus 316 g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~ 395 (510)
T 3ul1_B 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395 (510)
T ss_dssp TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 45677888999999999999999999986532 2235567899999999999999999999999999887655432
Q ss_pred --HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcc---cCCH--H----HHH-HHHHHHHHhhcCCCC
Q 001018 976 --IVDKIRVQMDAFLEDGSHEATVAVVRALAVAVP---HTTE--R----LRD-YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 976 --~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p---~~~~--~----~r~-~IlP~L~~L~~vpN~ 1031 (1188)
+...+.+.+..+|..++..++..++.+|..|.. ..+. . +.+ -.+..|..|...+|.
T Consensus 396 ~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~ 463 (510)
T 3ul1_B 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE 463 (510)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 224467778889999999999999998887643 2211 1 112 356677777666664
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.6e-05 Score=85.22 Aligned_cols=151 Identities=9% Similarity=0.074 Sum_probs=125.8
Q ss_pred HHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhC-chh---hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh
Q 001018 501 DSLTHTLFNLI-KRPDEKQRRIIMDACVTLAKNVG-EMR---TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE 575 (1188)
Q Consensus 501 ~~Ll~ll~nLi-Kdddp~vRr~aa~~l~~iA~~lg-~er---t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e 575 (1188)
.+++..+...+ +|.++.+|..++..++.||..++ +.. -...++|.+.+...|+..+||-.+..++-.|.+.+++.
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence 47788888888 89999999999999999999998 543 34568999999999999999999999999999988543
Q ss_pred h---hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc-h----hh-hhHHHHHHHhccCCChhHHHHHHHhhHHH
Q 001018 576 I---RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNT-D----KY-FKVEDLMFQLVCDPSGVVVETTFKELLPA 646 (1188)
Q Consensus 576 ~---r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~-d----~~-~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpa 646 (1188)
. +-..+++.|....+.+.|.||..+..-|+.++...+.. . .+ .++.|.+..++.|+...||.+|...+ ..
T Consensus 139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l-~~ 217 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF-AI 217 (249)
T ss_dssp CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH-HH
T ss_pred ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HH
Confidence 2 13457888888888899999999999999999887752 1 24 58999999999999999999999888 56
Q ss_pred HHhccc
Q 001018 647 VINWGS 652 (1188)
Q Consensus 647 la~~~~ 652 (1188)
++++..
T Consensus 218 i~~~vG 223 (249)
T 2qk1_A 218 LIKIFG 223 (249)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 565544
No 53
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.26 E-value=0.024 Score=73.58 Aligned_cols=465 Identities=12% Similarity=0.066 Sum_probs=249.6
Q ss_pred HHHHHHHHHHhhcCC-----CHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhCh
Q 001018 500 RDSLTHTLFNLIKRP-----DEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 500 R~~Ll~ll~nLiKdd-----dp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~ 574 (1188)
|+.|+.++.....+| ++.+|...+..++.|++..-|++ +..++|.+....+.. +.....+..-|..|.+-+..
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 57888889999999999987764 788999888877633 33444444555444433211
Q ss_pred --------h----------hhhhhhHHHHHHhh-cCCcHHHHHHHHHHHHhhcccCCCchhh-hhHHHHHH-HhccCCCh
Q 001018 575 --------E----------IRDSLILSIVQQLV-EDSATVVREAAARNLALLLPLFPNTDKY-FKVEDLMF-QLVCDPSG 633 (1188)
Q Consensus 575 --------e----------~r~slLL~~LqqL~-eD~e~~VR~aAAksL~~l~~~l~~~d~~-~qi~~~f~-~Ll~D~s~ 633 (1188)
. .+...++..+.++. ....+.+..++.+.+.....-++-.... ..+++.++ .++.+ +
T Consensus 171 ~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~ 248 (1023)
T 4hat_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--P 248 (1023)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--H
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--H
Confidence 1 11123556666633 4457778888999999988877754332 35778777 77764 5
Q ss_pred hHHHHHHHhhHHHHHhcc-cc---hHHHHHHHHHHHhhhh-ccC-CCccccchhhhhhhhhhh-hhhhhhHHHHHHHHHH
Q 001018 634 VVVETTFKELLPAVINWG-SK---LDHILRVLLSYILSSA-QRC-PPLSGVEGSVESHLRVLG-ERERWNLEVLLRMMAE 706 (1188)
Q Consensus 634 ~Vr~aa~~~Llpala~~~-~~---~~~ll~~ll~~L~~~v-~~l-p~~~~v~~~la~~l~~Lg-~d~sWrV~~~l~~l~~ 706 (1188)
..|.+|++.|.-.+.+-. .+ .+..+..++..++..+ +.. |........+.. .. +|. -.++.+..
T Consensus 249 ~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~----~~~~D~-----e~~~~l~~ 319 (1023)
T 4hat_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN----ANGNDQ-----SFLQDLAM 319 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHH----TCTTHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhc----cccchH-----HHHHHHHH
Confidence 789999988844443211 12 1223334444443322 222 211111111211 01 111 01112222
Q ss_pred HHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHH
Q 001018 707 LLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAV 786 (1188)
Q Consensus 707 LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~L 786 (1188)
++-.+...-. .++. .. +.+..+...++-.++.++ ....+.|=...-+++..|
T Consensus 320 l~~~~~e~~~------------------~li~----~~---~~~~~~l~~~l~~Ll~~~---~~~d~ei~~~tl~FW~~L 371 (1023)
T 4hat_C 320 FLTTYLARNR------------------ALLE----SD---ESLRELLLNAHQYLIQLS---KIEERELFKTTLDYWHNL 371 (1023)
T ss_dssp HHHHHHHHHG------------------GGGT----SC---GGGHHHHHHHHHHHHHHT---TSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------HHHh----CC---cchhHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHH
Confidence 2221111100 0000 00 111223333344455554 555777766667788888
Q ss_pred HHhhCHH--------HHHHHHHHHHHHHhCCccccccCCcccccc-ccCCCcchhHhhhh--hhhchhhHHhhhhcCCCC
Q 001018 787 SKQFGDS--------YLTHIMLPVFMVAVGDNANLTFFPSTIHSG-IRGLKPRTAVGERL--ATMGVLPLLLAGVLGAPS 855 (1188)
Q Consensus 787 a~~fG~e--------~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~-I~~L~~rtaig~~l--~~~~lLP~il~gVL~~~~ 855 (1188)
++.+-.+ -.-.+|.+.++.-+.=++++-|+-. -... ++.....+.-...+ .+.++ .++..+++
T Consensus 372 ~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~-d~~~~~~e~~~d~d~~~~f~~~Rd~L--~~l~~l~~--- 445 (1023)
T 4hat_C 372 VADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVEN-DEGEIVREFVKESDTIQLYKSEREVL--VYLTHLNV--- 445 (1023)
T ss_dssp HHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEEC-TTSCEEECSSCCGGGHHHHHHHHHHH--HHHHHHCH---
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCC-CCccHHHHhccchHHHHHHHHHHHHH--HHHhccCH---
Confidence 8754321 1122445555544432221100000 0000 00010111111111 12222 23333333
Q ss_pred cchhhhHHHHHHHhhccc-ccccccchhhhHHHHHHhh-hc-----hhhHHHhHHHHHHHhhc-----CCChhHHHHHHH
Q 001018 856 KHDQLADYLRKLLVEGTM-KENHTVKCNAEIVNAVRFL-CT-----FEEHHTMVFNILWEMVV-----SSNIDMKINAAN 923 (1188)
Q Consensus 856 ~~~~l~nyL~rLt~~~s~-~~~W~v~~~p~ll~ai~~L-g~-----~e~~~~~iLpiL~~lv~-----D~~pnVR~naak 923 (1188)
+ +-+..++..+...... ..+|.. .-+.+.|+..+ ++ ...+...++|.|..+.. |+.+-||-+++-
T Consensus 446 ~-~~~~~~~~~l~~~l~~~~~~W~~--~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 446 I-DTEEIMISKLARQIDGSEWSWHN--INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY 522 (1023)
T ss_dssp H-HHHHHHHHHHHHHHSSTTCCHHH--HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence 1 1111223333222221 135765 22247776443 22 23456788899999886 577888989999
Q ss_pred HHHHHHhhhchhh-hhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH----------HHHHHHHHHHHHhcCCC
Q 001018 924 LLKVIVPYINAKV-TSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM----------IVDKIRVQMDAFLEDGS 992 (1188)
Q Consensus 924 ~L~~L~~~ig~~~-ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~----------~~ekl~~~~~slL~D~~ 992 (1188)
.+++..+.+...+ .-..++..|.+-..|++.+|..+|..||..+++.++... +.+.+...+.....+-.
T Consensus 523 ~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~ 602 (1023)
T 4hat_C 523 VVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ 602 (1023)
T ss_dssp HHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC
Confidence 9999888764321 224455555555678899999999999999999988765 56778888888877777
Q ss_pred hhHHHHHHHHHHHhcccCCHHH
Q 001018 993 HEATVAVVRALAVAVPHTTERL 1014 (1188)
Q Consensus 993 ~~vR~~vv~al~~l~p~~~~~~ 1014 (1188)
..-+..+..+++.++..++..-
T Consensus 603 ~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 603 PQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHh
Confidence 7888899999999999987543
No 54
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.24 E-value=0.0053 Score=78.66 Aligned_cols=112 Identities=7% Similarity=0.101 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcC-----CcHHHHHHHHHHHHhhcccCCCch--hhhhHHHHHHHhc
Q 001018 556 ERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVED-----SATVVREAAARNLALLLPLFPNTD--KYFKVEDLMFQLV 628 (1188)
Q Consensus 556 EVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD-----~e~~VR~aAAksL~~l~~~l~~~d--~~~qi~~~f~~Ll 628 (1188)
+.|..+++.+..++..+| +..-..+++.+++.... ..|+.|+++.-.|+.+++.+.... ...++++++..+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence 578888888888888776 44445566776664433 799999999999999999887543 2345666555555
Q ss_pred -cCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhh
Q 001018 629 -CDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSA 669 (1188)
Q Consensus 629 -~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v 669 (1188)
.|+.+.||.++...+ ..|+.|.......+..+++.|+..+
T Consensus 515 ~~d~~~~vr~~a~~~l-~~~~~~l~~~~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 515 YEKLNVKLLGTALETM-GSYCNWLMENPAYIPPAINLLVRGL 555 (971)
T ss_dssp TTTSCHHHHHHHHHHH-HHTHHHHC----CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 377999999998776 8888887543334455566555443
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.23 E-value=0.0028 Score=77.91 Aligned_cols=121 Identities=8% Similarity=-0.089 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCc
Q 001018 514 PDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSA 593 (1188)
Q Consensus 514 ddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e 593 (1188)
.++..|+.++.++..+ -.+|.+- +.+.+.+-+++..+.-+.|-++-=.++.+++. ..+..-++...+++-+.|..
T Consensus 50 ~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L~iN~l~kDl~~~n 124 (621)
T 2vgl_A 50 LDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRLINNAIKNDLASRN 124 (621)
T ss_dssp CCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHhcCCCC
Confidence 4788999999998776 5678754 45677777766655555555444444444421 12334566788898888999
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhc--cCCChhHHHHHHHhh
Q 001018 594 TVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLV--CDPSGVVVETTFKEL 643 (1188)
Q Consensus 594 ~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll--~D~s~~Vr~aa~~~L 643 (1188)
+.||..|.+.++.+.. ++....+.+.+..++ .|..+.||..|+-.+
T Consensus 125 ~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al 172 (621)
T 2vgl_A 125 PTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCL 172 (621)
T ss_dssp HHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999863 456667889999999 999999999885443
No 56
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.21 E-value=0.00011 Score=88.19 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=85.3
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH-
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM- 975 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~- 975 (1188)
..++|.|..++.++.+.||..++..|..|+.. ....++...++|.|+.+..+.+.+||..+..||..++.....+.
T Consensus 334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~ 413 (529)
T 3tpo_A 334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQI 413 (529)
T ss_dssp TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 34678889999999999999999999998653 22235667799999999999999999999999999887655432
Q ss_pred --H-HHHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 976 --I-VDKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 976 --~-~ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
+ ...+.+.+..+|..++..++..++.+|..|.
T Consensus 414 ~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 414 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2 2335667778888888888888888777654
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.20 E-value=7.6e-05 Score=78.65 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=144.4
Q ss_pred hHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHh
Q 001018 758 FPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFG---DSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVG 834 (1188)
Q Consensus 758 LP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG---~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig 834 (1188)
+|.++++. .+.++.+|..++..+..++..-. ..+.....+|.++.+|++.... + | .
T Consensus 4 i~~L~~~L---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-v-~-------------~--- 62 (252)
T 4hxt_A 4 VEKLVKLL---TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSE-V-Q-------------K--- 62 (252)
T ss_dssp HHHHHHHT---TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH-H-H-------------H---
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHH-H-H-------------H---
Confidence 56777764 66779999999999999986543 2233335788888888764210 0 0 0
Q ss_pred hhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCC
Q 001018 835 ERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSN 914 (1188)
Q Consensus 835 ~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~ 914 (1188)
.....|..++..... . .........+|.+..++.++.
T Consensus 63 ------------------------~a~~~L~~l~~~~~~--------------~-----~~~~~~~~~i~~l~~ll~~~~ 99 (252)
T 4hxt_A 63 ------------------------EAARALANIASGPDE--------------A-----IKAIVDAGGVEVLVKLLTSTD 99 (252)
T ss_dssp ------------------------HHHHHHHHHTTSCHH--------------H-----HHHHHHTTHHHHHHHHTTCSS
T ss_pred ------------------------HHHHHHHHHHcCChH--------------H-----HHHHHHCCCHHHHHHHHcCCC
Confidence 001112222211000 0 001122357899999999999
Q ss_pred hhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHh
Q 001018 915 IDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK---NDMIVDKIRVQMDAFL 988 (1188)
Q Consensus 915 pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~---~e~~~ekl~~~~~slL 988 (1188)
+.||.+++..|..++.. .-...+...++|.|+.+..++++.||..+..++..++.... ...+...+.+.+..++
T Consensus 100 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 179 (252)
T 4hxt_A 100 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999843 22235566789999999999999999999999999986421 2234456888999999
Q ss_pred cCCChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCC
Q 001018 989 EDGSHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPS 1030 (1188)
Q Consensus 989 ~D~~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN 1030 (1188)
.+++..+|..++.++..++...+. .+.+ -++|.|..+...++
T Consensus 180 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 180 TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 999999999999999999864322 2333 47888888887554
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=8.1e-07 Score=86.81 Aligned_cols=116 Identities=19% Similarity=0.142 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL 582 (1188)
-...+..+++|+++.+|..++..++.+ |... +|.+.+.++|+.+.||..++..+|.+.. .-.+
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~ 75 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRM----GDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAV 75 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSC----SSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHh----CchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 356778889999999999999887754 3322 4777788889999999999999988752 1237
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+.|..+.+|+.|.||.+|+..|+.+.. .+..+.+..+++|+.+.||..++..|
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 778888899999999999999999862 25788889999999999999987654
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00016 Score=78.88 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=97.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-HHHHhCc----hhhHhhHHHHHHHHh-hcCchhHHHHHHHHHHHHHhhhC-hh---h
Q 001018 507 LFNLIKRPDEKQRRIIMDACVT-LAKNVGE----MRTEMELLPQCWEQI-NHMYEERRLLVAQSCGELAEFVR-PE---I 576 (1188)
Q Consensus 507 l~nLiKdddp~vRr~aa~~l~~-iA~~lg~----ert~~ELLP~l~eli-~Dd~dEVRlLvAescg~La~~vg-~e---~ 576 (1188)
|...+.+.+...|+.++..+.. ++.-... ...-.+++..+...+ +|..-.||..++.++|.|+..++ +. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5566788888888888888877 7642111 111146777777767 67778888888888888888887 54 3
Q ss_pred hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhh---hhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 577 RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKY---FKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~---~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+...++|.+-....|+...||+++...+..+++.+++...+ ..+.+.++..++...+.||..++..+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 44557888888788888889888888888888877543322 25667777777777777777775544
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.04 E-value=0.00086 Score=85.32 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=77.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH--HHHHH
Q 001018 902 VFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND--MIVDK 979 (1188)
Q Consensus 902 iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e--~~~ek 979 (1188)
+..++-.+..+..|.||.+++-.|..+...-+ ...++..|..|.+|+|..||.+++.|++.+..+-... --+.+
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 34444445668889999999999998763333 3567778999999999999999999999998754432 12456
Q ss_pred HHHHHHHHhcC--CChhHHHHHHHHHHHh
Q 001018 980 IRVQMDAFLED--GSHEATVAVVRALAVA 1006 (1188)
Q Consensus 980 l~~~~~slL~D--~~~~vR~~vv~al~~l 1006 (1188)
++.++.++..| .+...+|-++-|.+.+
T Consensus 689 ~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 689 INKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 77888888877 3578888888888765
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.98 E-value=0.00015 Score=76.42 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=126.5
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh---hch
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH---FKN 973 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~---l~~ 973 (1188)
..++|.|..++.++.+.||..++..|..++.. .-...+...++|.|+.+.++++..||..+..++..++.. ...
T Consensus 43 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35789999999999999999999999999753 333456667899999999999999999999999999852 222
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 001018 974 DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
..+...+.+.+..++.+++..++..++.+++.++...+. .+++ -++|.|..+...++. .-|...+.+ +
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~----L 194 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS----EVQKEAARA----L 194 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHH----H
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCH----HHHHHHHHH----H
Confidence 233345788899999999999999999999999876433 2344 588999988875543 224444333 4
Q ss_pred Hhhccc--cCchhhhhhhHHHHHHHHHhccC
Q 001018 1050 RALDAT--ELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus 1050 ~aL~~~--~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
..+... ..-..++...++|.|..++++.+
T Consensus 195 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 195 ANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 334321 11223455667899999887654
No 62
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.98 E-value=0.041 Score=70.19 Aligned_cols=133 Identities=10% Similarity=0.090 Sum_probs=96.9
Q ss_pred hhHHHhHHHHHHHhh----cCCChhHHHHHHHHHHHHHhhhchh--hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHH
Q 001018 896 EEHHTMVFNILWEMV----VSSNIDMKINAANLLKVIVPYINAK--VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv----~D~~pnVR~naak~L~~L~~~ig~~--~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~ 969 (1188)
+.+...+++.+...+ .++....|.++...+..+++.+..+ -.-..++|.+..|.+ ++..||..++.+++..+.
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSE 518 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHH
Confidence 456677777777777 6778889999999999999887542 122356666666665 478899999999999998
Q ss_pred hhch-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHH---HHHHHHHHHHhhcCCCC
Q 001018 970 HFKN-DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERL---RDYLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 970 ~l~~-e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~---r~~IlP~L~~L~~vpN~ 1031 (1188)
.++. ..+...+.+.+...+.| +.++..++.+|.+++..+...+ .+.|+..|..+...+.+
T Consensus 519 ~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~ 582 (963)
T 2x19_B 519 WLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIH 582 (963)
T ss_dssp HHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCS
T ss_pred HHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 7653 35667777777777876 7899999999999987665433 33466666666554444
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.95 E-value=0.00019 Score=74.30 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=130.1
Q ss_pred hhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcch
Q 001018 755 VDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQF---GDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRT 831 (1188)
Q Consensus 755 ~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~f---G~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rt 831 (1188)
....|.+..|. .+.++.||..++..+..++..- -..+.....+|.++.+|++.... + | .
T Consensus 11 ~~~~~~l~~LL---~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~-v-~-------------~ 72 (210)
T 4db6_A 11 GSELPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-I-L-------------Q 72 (210)
T ss_dssp --CHHHHHHHT---TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH-H-H-------------H
T ss_pred cchhHHHHHHh---cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHH-H-H-------------H
Confidence 44677778875 8889999999999999998421 11223335678888888764210 0 0 0
Q ss_pred hHhhhhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhc
Q 001018 832 AVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVV 911 (1188)
Q Consensus 832 aig~~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~ 911 (1188)
. ....|..++..... . .. .......+|.|..++.
T Consensus 73 ~---------------------------a~~~L~~l~~~~~~-------~----~~--------~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 73 E---------------------------ALWALSNIASGGNE-------Q----IQ--------AVIDAGALPALVQLLS 106 (210)
T ss_dssp H---------------------------HHHHHHHHTTSCHH-------H----HH--------HHHHTTCHHHHHHHTT
T ss_pred H---------------------------HHHHHHHHhcCCcH-------H----HH--------HHHHCCCHHHHHHHHc
Confidence 0 00111222110000 0 00 1112346899999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhc---hhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc--hH-HHHHHHHHHHH
Q 001018 912 SSNIDMKINAANLLKVIVPYIN---AKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK--ND-MIVDKIRVQMD 985 (1188)
Q Consensus 912 D~~pnVR~naak~L~~L~~~ig---~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~--~e-~~~ekl~~~~~ 985 (1188)
++.+.||.+++..|..|+..-. ...+...++|.|+.+.++++..||..+..+|..++.... .. .+.....+.+.
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 186 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 9999999999999999985322 134567799999999999999999999999999986421 12 23345788889
Q ss_pred HHhcCCChhHHHHHHHHHHHhcc
Q 001018 986 AFLEDGSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 986 slL~D~~~~vR~~vv~al~~l~p 1008 (1188)
.++.+++..++..++.+|..++.
T Consensus 187 ~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 187 QLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998863
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.94 E-value=0.00029 Score=74.84 Aligned_cols=131 Identities=21% Similarity=0.146 Sum_probs=105.3
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch---hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc---hH
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINA---KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK---ND 974 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~---~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~---~e 974 (1188)
..+|.|..++.++.+.||.+++..|..|+..-.. ..+...++|.|+.+.+++++.||..+..++..++.... ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4789999999999999999999999999765433 35667799999999999999999999999999986321 11
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCCC
Q 001018 975 MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN~ 1031 (1188)
.+...+.+.+..++.+++..++..++.+|+.++..-+. .+++ -++|.|..+...++.
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH
Confidence 23355788899999999999999999999999854332 2344 588888888875554
No 65
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.91 E-value=0.00016 Score=74.87 Aligned_cols=172 Identities=17% Similarity=0.092 Sum_probs=123.0
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh---chhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh---ch
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYI---NAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF---KN 973 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~i---g~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l---~~ 973 (1188)
....|.|..++.++.+.||..++..|..++..- -...+...++|.|+.+.++++..||..+..+++.++..- ..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 456788999999999999999999999998432 224566689999999999999999999999999988421 12
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH---HHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 001018 974 DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER---LRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~---~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
..+.....+.+..++.+++..++..++.+++.+....+.. +.+ -++|.|..+...++. .-|...+.+|....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE----QILQEALWALSNIA 166 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH----HHHHHHHHHHHHHH
Confidence 2333447788999999999999999999999998654332 334 588999998876553 22444544444332
Q ss_pred HhhccccCchhhhhhhHHHHHHHHHhcc
Q 001018 1050 RALDATELSATSVRDFLLPAIQNLLKDA 1077 (1188)
Q Consensus 1050 ~aL~~~~l~~~~v~~~ilP~L~~L~~D~ 1077 (1188)
.. .......++....+|.|..++.+.
T Consensus 167 ~~--~~~~~~~~~~~g~i~~L~~ll~~~ 192 (210)
T 4db6_A 167 SG--GNEQKQAVKEAGALEKLEQLQSHE 192 (210)
T ss_dssp TS--CHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred cC--CcHHHHHHHHCCCHHHHHHHHhCC
Confidence 21 011123345556789998888753
No 66
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.91 E-value=0.017 Score=74.88 Aligned_cols=368 Identities=11% Similarity=0.036 Sum_probs=195.7
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHHhCchh-hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhh-hChh--hhhhhh
Q 001018 507 LFNLIK-RPDEKQRRIIMDACVTLAKNVGEMR-TEMELLPQCWEQINHMYEERRLLVAQSCGELAEF-VRPE--IRDSLI 581 (1188)
Q Consensus 507 l~nLiK-dddp~vRr~aa~~l~~iA~~lg~er-t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~-vg~e--~r~slL 581 (1188)
+...+. .+++.+|..+++.+..+...+.... ..+.+++.+.+..- ..+++|..+.+++..+... +++. .....+
T Consensus 199 ~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~ 277 (1049)
T 3m1i_C 199 CFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQT 277 (1049)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 344343 3457788888887777666555332 34567777664222 2577888888888777744 2222 011111
Q ss_pred -------HHHHHH--------------hhcCCcHHHHHHHHHHHHhhccc----CCC----chhhhhHHHHHHHhccCCC
Q 001018 582 -------LSIVQQ--------------LVEDSATVVREAAARNLALLLPL----FPN----TDKYFKVEDLMFQLVCDPS 632 (1188)
Q Consensus 582 -------L~~Lqq--------------L~eD~e~~VR~aAAksL~~l~~~----l~~----~d~~~qi~~~f~~Ll~D~s 632 (1188)
+..++. .+.|.++.++..+++.|..++.. +.. ......+.++++.....++
T Consensus 278 ~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d 357 (1049)
T 3m1i_C 278 VLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEE 357 (1049)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCc
Confidence 221111 13466777777777777655432 111 1123346777777777788
Q ss_pred hhHHHHHHHhhHHHHHh-------cccchHHHHHHHHHHHhhhhccCCCccccch-hhhhhh-hhhhhhhhhhHHHHHHH
Q 001018 633 GVVVETTFKELLPAVIN-------WGSKLDHILRVLLSYILSSAQRCPPLSGVEG-SVESHL-RVLGERERWNLEVLLRM 703 (1188)
Q Consensus 633 ~~Vr~aa~~~Llpala~-------~~~~~~~ll~~ll~~L~~~v~~lp~~~~v~~-~la~~l-~~Lg~d~sWrV~~~l~~ 703 (1188)
.+|+..+.... ..++. ........+..+++.++..+ ..|.+..+.. .-.... ....+++.|..+. .
T Consensus 358 ~~v~~~~lefw-~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m-~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~---~ 432 (1049)
T 3m1i_C 358 RELFKTTLDYW-HNLVADLFYEPLKKHIYEEICSQLRLVIIENM-VRPEEVLVVENDEGEIVREFVKESDTIQLYK---S 432 (1049)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTC-CCCTTCCEEECTTSCEEECSSCCHHHHHHHH---H
T ss_pred HHHHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHHHhc-CCCcceeeeeCCCCcchHhhhccchHHHHHH---H
Confidence 88888887544 55544 11112234455555554433 2232211100 000000 0111233343332 2
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHH
Q 001018 704 MAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFL 783 (1188)
Q Consensus 704 l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l 783 (1188)
..+.+-.+... . .+-+...+++.+.+... -...+|+.|.+..-.+
T Consensus 433 ~~~~L~~l~~~-~---------------------------------~~~~l~~v~~~l~~~l~-~~~~~W~~~eaal~al 477 (1049)
T 3m1i_C 433 EREVLVYLTHL-N---------------------------------VIDTEEIMISKLARQID-GSEWSWHNINTLSWAI 477 (1049)
T ss_dssp HHHHHHHHHHH-C---------------------------------HHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-C---------------------------------HHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Confidence 22222111110 0 01123344555544421 1357899999999999
Q ss_pred HHHHHhhCHHHH---HHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcchhh
Q 001018 784 LAVSKQFGDSYL---THIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQL 860 (1188)
Q Consensus 784 ~~La~~fG~e~t---~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~~~l 860 (1188)
..+++.++..-. ...+++.+..+..-. + . ..
T Consensus 478 gsia~~~~~~~e~~~l~~v~~~l~~l~~~~------~--------------------------------------~--~~ 511 (1049)
T 3m1i_C 478 GSISGTMSEDTEKRFVVTVIKDLLDLTVKK------R--------------------------------------G--KD 511 (1049)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHTTSS------C--------------------------------------S--HH
T ss_pred HHHhcccCchhhHHHHHHHHHHHHHHHhhh------c--------------------------------------c--cc
Confidence 999988876532 223334333321000 0 0 00
Q ss_pred hHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh---
Q 001018 861 ADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT--- 937 (1188)
Q Consensus 861 ~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l--- 937 (1188)
...+.+.+.. |.+.+.+ ..+..+......+++.+.+.+.|+.|.||..++..|..++...+...+
T Consensus 512 ~~~~v~~~~~------~~lgry~------~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~ 579 (1049)
T 3m1i_C 512 NKAVVASDIM------YVVGQYP------RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ 579 (1049)
T ss_dssp HHHHHHHHHH------HHHHHCH------HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred chHHHHHHHH------HHHHHHH------HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0111111110 1111111 122233456678899999999999999999999999999998776543
Q ss_pred -------hhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 938 -------SMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 938 -------s~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
-..|+..+..+..+.+.+-+..+.+|++.++...+.
T Consensus 580 ~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 580 PRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp TTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 345555566677777777788999999999988773
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.88 E-value=0.00017 Score=76.68 Aligned_cols=170 Identities=18% Similarity=0.129 Sum_probs=125.5
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch--H
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN--D 974 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~--e 974 (1188)
..++|.|..++.++.+.||..++..|..++.. .-...+....+|.|+.+.++++..||..++.++..++..-.. .
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 45889999999999999999999999999853 223455567999999999999999999999999999865332 2
Q ss_pred -HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH---HHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 001018 975 -MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER---LRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus 975 -~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~---~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
.+...+.+.+..++.+++..++..++.+|+.+....+.. +.+ .++|.|..+...++. .-|...+ .++
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~----~~L 204 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE----QILQEAL----WAL 204 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSH----HHHHHHH----HHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCH----HHHHHHH----HHH
Confidence 333458899999999999999999999999998654332 334 578889888876543 1244443 334
Q ss_pred Hhhccc--cCchhhhhhhHHHHHHHHHhcc
Q 001018 1050 RALDAT--ELSATSVRDFLLPAIQNLLKDA 1077 (1188)
Q Consensus 1050 ~aL~~~--~l~~~~v~~~ilP~L~~L~~D~ 1077 (1188)
..|... ..-..++...++|.|..++.+.
T Consensus 205 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 205 SNIASGGNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhCCC
Confidence 434311 1122345556788888888764
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.82 E-value=2.2e-05 Score=76.58 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=74.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHH
Q 001018 903 FNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRV 982 (1188)
Q Consensus 903 LpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~ 982 (1188)
+|.|..++.|+.|.||..++..|..+.. ...+|.|..+.+|+++.||..++.+++.+. . ....+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~----~~a~~ 107 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----G----ERVRA 107 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----S----HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c----HHHHH
Confidence 4888999999999999999999887642 356889999999999999999999998764 2 33566
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHh
Q 001018 983 QMDAFLEDGSHEATVAVVRALAVA 1006 (1188)
Q Consensus 983 ~~~slL~D~~~~vR~~vv~al~~l 1006 (1188)
.+..++.|+++.+|..++.+|++|
T Consensus 108 ~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 108 AMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Confidence 777788999999999999998764
No 69
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.76 E-value=0.22 Score=64.67 Aligned_cols=214 Identities=10% Similarity=0.111 Sum_probs=122.7
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhh----------hhhhhhHHHhhccCCCcchHHHHHHHH
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVT----------SMQVLPALVTLGSDQNLNVKYASIDAF 964 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~l----------s~~VlPaLv~LasD~d~dVR~aaieAl 964 (1188)
+......+++.+...+.|++|.|.-+++..|..|+...+.... -..++..+.+...+-+..-+..+.+|+
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455677889999999999999999999999999998876654 244555566666677888899999999
Q ss_pred HHHHHhhchHH----HHHHHHHHH-HHH---h----cCCC-------hhHHHHHHHHHHHhcccCCHHHHH---HHHHHH
Q 001018 965 GAVAQHFKNDM----IVDKIRVQM-DAF---L----EDGS-------HEATVAVVRALAVAVPHTTERLRD---YLLSKI 1022 (1188)
Q Consensus 965 ~~LA~~l~~e~----~~ekl~~~~-~sl---L----~D~~-------~~vR~~vv~al~~l~p~~~~~~r~---~IlP~L 1022 (1188)
+.+++..+.+. ..+++++.+ ..| . .|++ -..-+.++++++.++..++..|.. .|+|.+
T Consensus 614 ~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~ 693 (1023)
T 4hat_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNM 693 (1023)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 99999887543 333332222 222 2 2332 123456677777777666666555 356655
Q ss_pred HHhhc---------C----CCC--ChhhHHHHHHHHHHHHHHHhh-ccccCchhhhhhhH-HHHHHHHHhcc-----CCC
Q 001018 1023 FQLSA---------V----PSS--SSDVMRRRERANAFCESIRAL-DATELSATSVRDFL-LPAIQNLLKDA-----DSL 1080 (1188)
Q Consensus 1023 ~~L~~---------v----pN~--~~~~~~R~~vAk~l~~a~~aL-~~~~l~~~~v~~~i-lP~L~~L~~D~-----d~l 1080 (1188)
..+-. + +.. ++.+..-+.+=+..+..+... ..+. ..+.|...+ -|.+...+.|= ++-
T Consensus 694 l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~-~~~~~~~~~~~~l~~~vl~dY~~~~~~~r 772 (1023)
T 4hat_C 694 LQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR-NLDDVVKVLVEPLLNAVLEDYMNNVPDAR 772 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS-CHHHHHHHTHHHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHhHHHHHHHHHHHHHhCChhhc
Confidence 44321 0 000 011111111222223333321 1222 223344444 44445555543 445
Q ss_pred ChHHHHHHHHHHhhccCCchhhhhhhhhh
Q 001018 1081 DPAHKEALEIIMKDRSGGTLETISKVMGA 1109 (1188)
Q Consensus 1081 ~~~~k~~l~~i~ke~~~~~~~~~~~~~~~ 1109 (1188)
+|+-=....+|++++.+.-.+.+...+.+
T Consensus 773 ~~~vL~l~s~iv~~~~~~~~~~~~~il~~ 801 (1023)
T 4hat_C 773 DAEVLNCMTTVVEKVGHMIPQGVILILQS 801 (1023)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 56666667778887764333555555544
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.66 E-value=0.11 Score=67.13 Aligned_cols=436 Identities=9% Similarity=0.037 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhh
Q 001018 499 TRDSLTHTLFNLIK-----RPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM-YEERRLLVAQSCGELAEFV 572 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiK-----dddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd-~dEVRlLvAescg~La~~v 572 (1188)
.+..|+..+++++. ++.+.+|..++..++.|++...|+ .+...++.+..+.+.. ....-+.+-.-|..+.+-+
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv 160 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEI 160 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHH
Confidence 44444444444444 356778888888888888887664 3555666665544321 2122222222333222221
Q ss_pred Ch------------------hhh-------hhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhh-hhHHHHHHH
Q 001018 573 RP------------------EIR-------DSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKY-FKVEDLMFQ 626 (1188)
Q Consensus 573 g~------------------e~r-------~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~-~qi~~~f~~ 626 (1188)
.. ..+ ...++.+|.+......+.++.++.+.|.....-++-..+. ..+++.++.
T Consensus 161 ~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~ 240 (980)
T 3ibv_A 161 ADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYS 240 (980)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHH
T ss_pred HhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHH
Confidence 10 001 1223444444433467788999999999988877655433 468888889
Q ss_pred hccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHH--hhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHH
Q 001018 627 LVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYI--LSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMM 704 (1188)
Q Consensus 627 Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L--~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l 704 (1188)
++.+ +.+|.+|++.|.-.+.+-. ..++.. .++..| .+.+..+.. + .+|.- .++-+-+.+
T Consensus 241 ~L~~--~~~r~~A~ecL~ei~~k~~-~~~~k~-~li~~l~L~~~~~~l~~---------~-----~~D~d-~~~~la~L~ 301 (980)
T 3ibv_A 241 FLQI--EELRCAACETMTEIVNKKM-KPLEKL-NLLNILNLNLFFSKSQE---------Q-----STDPN-FDEHVAKLI 301 (980)
T ss_dssp HTTS--HHHHHHHHHHHHHHHHSCC-CHHHHH-HHHHHHHHHHHHCC-------------------CCHH-HHHHHHHHH
T ss_pred HcCC--hHHHHHHHHHHHHHHHcCC-ChhhHH-HHHHHHhHHHHHHHHhc---------c-----cccHH-HHHHHHHHH
Confidence 9987 7899999998855555532 232211 122211 111111100 0 01110 000011122
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCcccccchhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHH
Q 001018 705 AELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLL 784 (1188)
Q Consensus 705 ~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~ 784 (1188)
..+.-.+... +..| ...+++.+ .. .......++|.+..+. .+..+.|-.....++.
T Consensus 302 ~~~ge~l~~~--~~~~---~~~~~~~~--~~--------------~~~~l~~ll~~lL~~~---~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 302 NAQGVELVAI--KSDP---SELSPELK--EN--------------CSFQLYNLFPYLIRYL---SDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHHHHHHHH--HTSC---C--CHHHH--HH--------------HHHHHHHTHHHHHHHH---TCSSHHHHHTTHHHHH
T ss_pred HHHHHHHHHH--ccCc---cccchhhh--hh--------------HHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHH
Confidence 1111111111 1010 00000000 00 1123456788888876 5667777666666665
Q ss_pred HHHHhhCH--------HHHH---HHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCC
Q 001018 785 AVSKQFGD--------SYLT---HIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGA 853 (1188)
Q Consensus 785 ~La~~fG~--------e~t~---~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~ 853 (1188)
.+...+-+ +.+. ..|++.++.-++=+++. .|-. . +-
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~----------------------~~~~--------~---~d 404 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ----------------------EWDD--------D---PD 404 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC----------------------CCCC--------C---SS
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc----------------------cccc--------c---cc
Confidence 55543321 1111 11222222221111100 0000 0 00
Q ss_pred CCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHH----hHHHHHHHhhc---CCChhHHHHHHHHHH
Q 001018 854 PSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHT----MVFNILWEMVV---SSNIDMKINAANLLK 926 (1188)
Q Consensus 854 ~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~----~iLpiL~~lv~---D~~pnVR~naak~L~ 926 (1188)
.+++++...|=+++.+ ++.++..++. +...+ .+.+++.+.+. +..-..+.+++-.|.
T Consensus 405 ~ed~~~F~e~Rk~l~~---------------l~d~~~~l~~-~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~ 468 (980)
T 3ibv_A 405 SEEEAEFQEMRKKLKI---------------FQDTINSIDS-SLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETY 468 (980)
T ss_dssp SSTHHHHHHHHHHHHH---------------HHHHHHHHCH-HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH---------------HHHHHHhcCh-HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 0011222233334332 3555555553 44444 67777766552 344677899999999
Q ss_pred HHHhhhchhh--------hhhhhhhHHHhhcc-----CCCcchHHHHHHHHHHHHHhhch-HHHHHHHHHHHHH--HhcC
Q 001018 927 VIVPYINAKV--------TSMQVLPALVTLGS-----DQNLNVKYASIDAFGAVAQHFKN-DMIVDKIRVQMDA--FLED 990 (1188)
Q Consensus 927 ~L~~~ig~~~--------ls~~VlPaLv~Las-----D~d~dVR~aaieAl~~LA~~l~~-e~~~ekl~~~~~s--lL~D 990 (1188)
.+++.+.... ....+.|.|..|.+ |++..||+.+.+.++..+.-+.. ..+...+.+.+.+ .+.|
T Consensus 469 ~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~ 548 (980)
T 3ibv_A 469 IFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHN 548 (980)
T ss_dssp HTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTC
T ss_pred HHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccC
Confidence 9998865422 22356677777744 99999999999999999987643 2344445555555 5557
Q ss_pred CChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhc
Q 001018 991 GSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA 1027 (1188)
Q Consensus 991 ~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~ 1027 (1188)
++..+|..++.+|.+++..+.+....++-+.|..+..
T Consensus 549 ~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 549 TNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred CChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 8889999999999999887766543355555555543
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.25 Score=61.93 Aligned_cols=108 Identities=10% Similarity=0.143 Sum_probs=78.4
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch---hhhh------hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINA---KVTS------MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~---~~ls------~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
..+|.|.+++.++.+.||-+++..+..|+..-.. +... ..=++.|+.|....|.++|.++.-||..++...
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999863321 2211 112778999999999999999999998886432
Q ss_pred c--hHHHH--HHHHHHHHHHhcC--CChhHHHHHHHHHHHhcc
Q 001018 972 K--NDMIV--DKIRVQMDAFLED--GSHEATVAVVRALAVAVP 1008 (1188)
Q Consensus 972 ~--~e~~~--ekl~~~~~slL~D--~~~~vR~~vv~al~~l~p 1008 (1188)
. ...+. ++....+..++.| .+..+|-..+..+.-++.
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2 12222 2345555666777 677888777777777765
No 72
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.49 E-value=0.44 Score=62.14 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=98.8
Q ss_pred ccccchhhhHHHHHHhh-hc-h---h-hHHHhHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHhhhchhh-hhhhhhh
Q 001018 876 NHTVKCNAEIVNAVRFL-CT-F---E-EHHTMVFNILWEMVVSS-----NIDMKINAANLLKVIVPYINAKV-TSMQVLP 943 (1188)
Q Consensus 876 ~W~v~~~p~ll~ai~~L-g~-~---e-~~~~~iLpiL~~lv~D~-----~pnVR~naak~L~~L~~~ig~~~-ls~~VlP 943 (1188)
.|.+....+++.|+..+ |. . | .+...+++.|+.+..++ -+-||.++.-.+++..+.+...+ .-..++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 45554555568887666 32 1 2 45677788888777544 56677777667777666654332 2345555
Q ss_pred HHHhhccCCCcchHHHHHHHHHHHHHhhchHH----------HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHH
Q 001018 944 ALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM----------IVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTER 1013 (1188)
Q Consensus 944 aLv~LasD~d~dVR~aaieAl~~LA~~l~~e~----------~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~ 1013 (1188)
.|.+-..|++-.|..+|..||..+++.|+..+ +.+.+...+.+...+=.+.-...+..+++.++...++.
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 66666789999999999999999999988764 66778888888777767777788888888888888754
Q ss_pred H
Q 001018 1014 L 1014 (1188)
Q Consensus 1014 ~ 1014 (1188)
.
T Consensus 650 ~ 650 (1073)
T 3gjx_A 650 T 650 (1073)
T ss_dssp H
T ss_pred c
Confidence 3
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.39 E-value=0.014 Score=74.39 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCC--------HHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhC
Q 001018 502 SLTHTLFNLIKRPD--------EKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVR 573 (1188)
Q Consensus 502 ~Ll~ll~nLiKddd--------p~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg 573 (1188)
+.+.+|.+.+.+++ +.+|+.|+-+|+-+.---+.+...+.|+|. +.|++..+|..+|-++|.+ |+|
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~----L~dd~~~~~~~AalALGli--~vG 502 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEV----LYNDSATSGEAAALGMGLC--MLG 502 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH----HHTCCHHHHHHHHHHHHHH--HTT
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH----HhcCCHHHHHHHHHHHhhh--hcc
Confidence 46777888777776 889999888888865433445555556664 4456667787777777764 344
Q ss_pred hhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHh
Q 001018 574 PEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVIN 649 (1188)
Q Consensus 574 ~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~ 649 (1188)
.. ....+-.+++.+.+|....||+.+|-.|+.+ .++.++. +..++-.|..|..+.||..++-.+.=+|+.
T Consensus 503 Tg-n~~ai~~LL~~~~e~~~e~vrR~aalgLGll--~~g~~e~---~~~li~~L~~~~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 503 TG-KPEAIHDMFTYSQETQHGNITRGLAVGLALI--NYGRQEL---ADDLITKMLASDESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp CC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCGGG---GHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred cC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhh--hCCChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 32 2233345556667788889999999999988 4555533 334444555688999999885554333443
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.31 E-value=0.11 Score=61.19 Aligned_cols=122 Identities=8% Similarity=-0.067 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhh---
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRD--- 578 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~--- 578 (1188)
..+..+++.+++.+|..++..+..++..-.+ .-.....+|.+-+++.++..+++..++.++..|+.. .++.+.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 4566777788888888888888888743222 223455789898988888899999888888888752 123222
Q ss_pred -hhhHHHHHHhhc-CCcHHHHHHHHHHHHhhcccCCCc-h-hhhhHHHHHHHhc
Q 001018 579 -SLILSIVQQLVE-DSATVVREAAARNLALLLPLFPNT-D-KYFKVEDLMFQLV 628 (1188)
Q Consensus 579 -slLL~~LqqL~e-D~e~~VR~aAAksL~~l~~~l~~~-d-~~~qi~~~f~~Ll 628 (1188)
.-.+|+|-++.. ...+.||+.|+..|..++.. ++. . +....+|.+..++
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRV 136 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHH
Confidence 224888888877 77899999999999999976 332 1 2226778888888
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.30 E-value=0.11 Score=61.79 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=59.2
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH 970 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~ 970 (1188)
-.+|.|..++.+....|+.+++..|..++.. .-..++..-.+|.|+.|...++..+|..+..||..|+..
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999998732 122356677899999999999999999999999988864
No 76
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.25 E-value=0.27 Score=63.61 Aligned_cols=279 Identities=8% Similarity=-0.009 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHhCchhhHh----hHHHHHHHHh---hcCchhHHHHHHHHHHHHHhhhChh--------hhhhhhH
Q 001018 518 QRRIIMDACVTLAKNVGEMRTEM----ELLPQCWEQI---NHMYEERRLLVAQSCGELAEFVRPE--------IRDSLIL 582 (1188)
Q Consensus 518 vRr~aa~~l~~iA~~lg~ert~~----ELLP~l~eli---~Dd~dEVRlLvAescg~La~~vg~e--------~r~slLL 582 (1188)
-|+... .+......+|++.+-. -|.|.+.+.+ .+..|+.+=++.=+++.+++.+... .....+.
T Consensus 414 ~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 565555 7777778899988887 7777776644 3456988888888889999876532 1223467
Q ss_pred HHHHHhhc-----CCcHHHHHHHHHHHHhhcccCCCch-hhhhHHHHHHH--hccCCChhHHHHHHHhhHHHHHhccc-c
Q 001018 583 SIVQQLVE-----DSATVVREAAARNLALLLPLFPNTD-KYFKVEDLMFQ--LVCDPSGVVVETTFKELLPAVINWGS-K 653 (1188)
Q Consensus 583 ~~LqqL~e-----D~e~~VR~aAAksL~~l~~~l~~~d-~~~qi~~~f~~--Ll~D~s~~Vr~aa~~~Llpala~~~~-~ 653 (1188)
+++.++.+ +.-+.||..+..-++..+..+.... ....+++.|+. .+.+++.+|+.+|+..| -.|++-+. .
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af-~~f~~~~~~~ 571 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLF-YRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHH-HHHHHHTTTT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHH-HHHHHHhhHH
Confidence 88888865 9999999999999999999886543 33457777777 88899999999987776 44544332 1
Q ss_pred hHHHHHHHHHHHhhhhcc--CCCc-c-c---------cchhhhhhh-------hh---hh--hhhhhhHHHHHHHHHHHH
Q 001018 654 LDHILRVLLSYILSSAQR--CPPL-S-G---------VEGSVESHL-------RV---LG--ERERWNLEVLLRMMAELL 708 (1188)
Q Consensus 654 ~~~ll~~ll~~L~~~v~~--lp~~-~-~---------v~~~la~~l-------~~---Lg--~d~sWrV~~~l~~l~~LL 708 (1188)
+...+..++..+.+.+.- .|.. . + ..+.+.+.+ .. .+ .+. + ...+..++
T Consensus 572 L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~--~----~~~l~~ll 645 (980)
T 3ibv_A 572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEE--Q----ALYCDSLI 645 (980)
T ss_dssp CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHH--H----HHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHH--H----HHHHHHHH
Confidence 222223344444322210 0110 0 0 000011111 11 11 111 1 22566666
Q ss_pred HHHHHHHhhhCCCCCCCCCcccccc------hhhhhhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHH
Q 001018 709 PFMQKNAIETCPFSSVSLSEETVFP------SSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKF 782 (1188)
Q Consensus 709 P~i~~~l~~~~pf~s~~qd~evrl~------~~ll~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~ 782 (1188)
+.+++.+-....-....++....+. ..+.+.|....+.-...--....+++.+....... .++..||.++...
T Consensus 646 ~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~-~~~~~irea~~~~ 724 (980)
T 3ibv_A 646 NALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM-GFNEDIRGAVRFT 724 (980)
T ss_dssp HHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS-CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 6666654332211111101111111 22333332211110011112334555554444322 3667999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHh
Q 001018 783 LLAVSKQFGDSYLTHIMLPVFMVAV 807 (1188)
Q Consensus 783 l~~La~~fG~e~t~~~LlP~fl~lL 807 (1188)
|..+..++|.+.. -++|.++..+
T Consensus 725 ~~r~i~~lg~~~~--p~lp~~i~~l 747 (980)
T 3ibv_A 725 SGRIINVVGPDML--PKVPQLISIL 747 (980)
T ss_dssp HHHHTTTTHHHHT--TTHHHHHHHH
T ss_pred HHHHHHHccHhHH--HHHHHHHHHH
Confidence 9999999999833 3345544444
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.22 E-value=0.015 Score=66.75 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=38.6
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHH
Q 001018 897 EHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMI 976 (1188)
Q Consensus 897 ~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~ 976 (1188)
.....+++++..++++.++.|-+.+++.+-.+.. .+.... ....+.|..+.+.++..+||+++..|..++... ...
T Consensus 246 ~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~--P~~ 321 (355)
T 3tjz_B 246 SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH--PSA 321 (355)
T ss_dssp -----------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC--cHH
Confidence 3456777888888899999999999999888765 333333 345667777777888899999999999888742 245
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 001018 977 VDKIRVQMDAFLEDGSHEATVAVVRALAV 1005 (1188)
Q Consensus 977 ~ekl~~~~~slL~D~~~~vR~~vv~al~~ 1005 (1188)
+......+++++.|++.+++.-++-++-+
T Consensus 322 v~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 322 VTACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 56678888999999999888777666644
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.19 E-value=0.23 Score=60.71 Aligned_cols=131 Identities=16% Similarity=0.231 Sum_probs=97.8
Q ss_pred HhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhh-------hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhh
Q 001018 900 TMVFNILWEMVV-SSNIDMKINAANLLKVIVPY-------INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 900 ~~iLpiL~~lv~-D~~pnVR~naak~L~~L~~~-------ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
...++.++.++. ...+.|+.+++..|.-++.. +-..+.....+|.|+.|...++..|+..+..||..|+..-
T Consensus 307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 446677788875 46799999999999988632 1112233567999999999999999999999999999764
Q ss_pred ch-HHHHHHHHHHHHHHhcCC--------ChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCC
Q 001018 972 KN-DMIVDKIRVQMDAFLEDG--------SHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPS 1030 (1188)
Q Consensus 972 ~~-e~~~ekl~~~~~slL~D~--------~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN 1030 (1188)
.. +.+.....|.+..+|..+ ...+.+.++.++..|+..-+. .+++ -.+|.|..|....+
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~ 458 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN 458 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC
Confidence 43 455677889999998876 346788899999887643222 3344 57889988887543
No 79
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.18 E-value=0.21 Score=60.92 Aligned_cols=378 Identities=12% Similarity=0.032 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---hhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh
Q 001018 499 TRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGE---MRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE 575 (1188)
Q Consensus 499 ~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~---ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e 575 (1188)
.|+.-+..|..+++.+++.++..|+..+..++..-.+ .-...--+|.|-+++.+...+++..++.+++.|+..-+.+
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4444566777788889999999998888887752211 1223346898999899999999999999999988532222
Q ss_pred ----hhhhhhHHHHHHhhcC-CcHHHHHHHHHHHHhhcccCCCc--hhhhhHHHHHHHhcc-----------------C-
Q 001018 576 ----IRDSLILSIVQQLVED-SATVVREAAARNLALLLPLFPNT--DKYFKVEDLMFQLVC-----------------D- 630 (1188)
Q Consensus 576 ----~r~slLL~~LqqL~eD-~e~~VR~aAAksL~~l~~~l~~~--d~~~qi~~~f~~Ll~-----------------D- 630 (1188)
+...--+|+|..|+.. ....|++.|+..|..++.. ++. .+....++.+..|+. +
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 2233357788776664 6789999999999888762 211 122344566666651 1
Q ss_pred CChhHHHHHHHhhHHHHHhcccchHHHHHH---HHHHHhhhhccCCCccccchhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 001018 631 PSGVVVETTFKELLPAVINWGSKLDHILRV---LLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAEL 707 (1188)
Q Consensus 631 ~s~~Vr~aa~~~Llpala~~~~~~~~ll~~---ll~~L~~~v~~lp~~~~v~~~la~~l~~Lg~d~sWrV~~~l~~l~~L 707 (1188)
....|+..|+..| -.++.-.......+.. +++.|+.-++.. ++. .-..+. -++.-+.++..|
T Consensus 204 ~d~~V~~nAa~~L-~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~---------~~~---~~~~~~--~~enav~aL~NL 268 (584)
T 3l6x_A 204 EWESVLTNTAGCL-RNVSSERSEARRKLRECDGLVDALIFIVQAE---------IGQ---KDSDSK--LVENCVCLLRNL 268 (584)
T ss_dssp CCHHHHHHHHHHH-HHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH---------HHT---TCCSCH--HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH-HHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh---------hcc---cCccHH--HHHHHHHHHHHh
Confidence 1346777666555 3333211010111110 111111111000 000 000000 000000011111
Q ss_pred HHHHHHHHhhhCCCCCCCCCccccc--chhhhhhhhcCCCCccchhhHHhh-hhHHHHHhhccCCCCcHHHHHHHHHHHH
Q 001018 708 LPFMQKNAIETCPFSSVSLSEETVF--PSSLLELYAGGHIEWPAFEWMHVD-CFPGLIQLACLLPEKEDNLRNRITKFLL 784 (1188)
Q Consensus 708 LP~i~~~l~~~~pf~s~~qd~evrl--~~~ll~l~~~~~~~w~~~~wl~~~-lLP~l~~LA~~~~D~sWrVR~Aia~~l~ 784 (1188)
- + .+....|-... ..+... +... ....-.|++|+.+. .+|.++.+... -.+..++.+++..|.
T Consensus 269 s---~-~~~~e~~~~~~--~~~~~~~~~~~~------~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 269 S---Y-QVHREIPQAER--YQEAAPNVANNT------GTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQ 334 (584)
T ss_dssp H---T-THHHHSTTCCC----------------------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred h---c-cccccccchhh--hhhhcccccccc------cccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHH
Confidence 1 0 01111110000 000000 0000 01112367777554 67777777621 246889999999999
Q ss_pred HHHHhhCHH--H-----HHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcc
Q 001018 785 AVSKQFGDS--Y-----LTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKH 857 (1188)
Q Consensus 785 ~La~~fG~e--~-----t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~ 857 (1188)
.||..=+.. . -....+|.++.+|...... ++
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~---------------v~--------------------------- 372 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHER---------------VV--------------------------- 372 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHH---------------HH---------------------------
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHH---------------HH---------------------------
Confidence 998632221 1 1234577777777543210 00
Q ss_pred hhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCC--------ChhHHHHHHHHHHHHH
Q 001018 858 DQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSS--------NIDMKINAANLLKVIV 929 (1188)
Q Consensus 858 ~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~--------~pnVR~naak~L~~L~ 929 (1188)
......|..|+.... ..+.+....+|-|..++.+. ...++..++..|..|+
T Consensus 373 ~~A~~aL~nLs~~~~---------------------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 373 KAASGALRNLAVDAR---------------------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp HHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChh---------------------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence 001112333332111 01223356888888888876 3578888888887765
Q ss_pred hh---hchhhhhhhhhhHHHhhccCC--CcchHHHHHHHHHHHHH
Q 001018 930 PY---INAKVTSMQVLPALVTLGSDQ--NLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 930 ~~---ig~~~ls~~VlPaLv~LasD~--d~dVR~aaieAl~~LA~ 969 (1188)
.. --..++....+|.|+.|..+. ...++-++..++..++.
T Consensus 432 a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 432 AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 32 222456778899999999876 56666666666665554
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.04 E-value=0.0053 Score=68.78 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=103.3
Q ss_pred HHHHHHH-hhcCCChhHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHHhh--chH
Q 001018 902 VFNILWE-MVVSSNIDMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQHF--KND 974 (1188)
Q Consensus 902 iLpiL~~-lv~D~~pnVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~~l--~~e 974 (1188)
.+|.|+. ++.++.+.||..++..|..++.. .-...+..-.+|.|+.|.+ |++..||..++.||+.++... +.+
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 5688888 99999999999999999999753 3334666788999999877 678999999999999988543 233
Q ss_pred HHH-HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccC---CHHHHH-HHHHHHHHhhcCCCC
Q 001018 975 MIV-DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHT---TERLRD-YLLSKIFQLSAVPSS 1031 (1188)
Q Consensus 975 ~~~-ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~---~~~~r~-~IlP~L~~L~~vpN~ 1031 (1188)
.|. ....+.+..+|.+++..++..++.+++.++-.- -..+++ -++|.|+.|...++.
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~ 223 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS 223 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 343 457888899999999999999999999987542 224555 588999999887654
No 81
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.96 E-value=0.044 Score=64.71 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhh
Q 001018 497 TSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEI 576 (1188)
Q Consensus 497 ~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~ 576 (1188)
++-.++-++-+++||.|+|+.+|..|++++..|++.--..++. .+| -++.+-++..-+-.|=.++..|...=
T Consensus 60 P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kia-DvL---~QlLqtdd~~E~~~V~~sL~sllk~D---- 131 (507)
T 3u0r_A 60 PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVA-DIL---TQLLQTDDSAEFNLVNNALLSIFKMD---- 131 (507)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHH-HHH---HHHTTCCCHHHHHHHHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHH-HHH---HHHHhccchHHHHHHHHHHHHHHhcC----
Confidence 4578889999999999999999999999999998861112222 233 33334455555556667776665432
Q ss_pred hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhh----HHHHHHHhccCCCh
Q 001018 577 RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFK----VEDLMFQLVCDPSG 633 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~q----i~~~f~~Ll~D~s~ 633 (1188)
-...|-+++.++..- +..||+.+.+=|..-...++.+....+ +......+++|-++
T Consensus 132 pk~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 132 AKGTLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred hHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 122346677776664 468999998887766655655433223 44555556655543
No 82
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.85 E-value=0.021 Score=63.94 Aligned_cols=156 Identities=11% Similarity=0.115 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHhhhch--hhhhhhhhhHHHh-hccCCCcchHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHhc
Q 001018 916 DMKINAANLLKVIVPYINA--KVTSMQVLPALVT-LGSDQNLNVKYASIDAFGAVAQH---FKNDMIVDKIRVQMDAFLE 989 (1188)
Q Consensus 916 nVR~naak~L~~L~~~ig~--~~ls~~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~---l~~e~~~ekl~~~~~slL~ 989 (1188)
.-|..++..|..+++.++. .....-.+|.|+. |.+.++..||..+..+++.+++. +....+.....+.+..+|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 5788899999988886653 2445667899999 99999999999999999999963 2222333457777778887
Q ss_pred -CCChhHHHHHHHHHHHhcccCCH---HHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhh
Q 001018 990 -DGSHEATVAVVRALAVAVPHTTE---RLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRD 1064 (1188)
Q Consensus 990 -D~~~~vR~~vv~al~~l~p~~~~---~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~ 1064 (1188)
|++..+|.+++.|++.++...++ .|++ -.+|.|..+...++. .-|.+.+.+|..+... . ...-..++..
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~----~v~~~A~~aLs~L~~~-~-~~~~~~vv~~ 208 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ----KLKVKSAFLLQNLLVG-H-PEHKGTLCSM 208 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHH-C-GGGHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH----HHHHHHHHHHHHHHhC-C-hHHHHHHHHc
Confidence 56889999999999999866544 4666 688988888775543 2255565555443322 1 1122345666
Q ss_pred hHHHHHHHHHhcc
Q 001018 1065 FLLPAIQNLLKDA 1077 (1188)
Q Consensus 1065 ~ilP~L~~L~~D~ 1077 (1188)
-++|.|-.|+...
T Consensus 209 g~i~~Lv~LL~~~ 221 (296)
T 1xqr_A 209 GMVQQLVALVRTE 221 (296)
T ss_dssp THHHHHHHHHTSC
T ss_pred CCHHHHHHHHcCC
Confidence 7788888888755
No 83
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.023 Score=62.20 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=87.1
Q ss_pred HHHhHHHHHHH-hhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH--
Q 001018 898 HHTMVFNILWE-MVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND-- 974 (1188)
Q Consensus 898 ~~~~iLpiL~~-lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e-- 974 (1188)
....++|.+.+ ++.|..+.+|-.+...+..++...+. ...++..|....+..++.||..++..+..+...+|..
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 44667887775 58899999999999888887765432 1234555666678899999999999999999887753
Q ss_pred ---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHH
Q 001018 975 ---MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERL 1014 (1188)
Q Consensus 975 ---~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~ 1014 (1188)
.+...+.+.+..+++|++..||-+.+..+..+.-.+++..
T Consensus 176 ~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 3556677788889999999999999999999988887653
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.69 E-value=0.034 Score=71.56 Aligned_cols=135 Identities=15% Similarity=0.231 Sum_probs=111.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhhChh--hhh
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHM-YEERRLLVAQSCGELAEFVRPE--IRD 578 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd-~dEVRlLvAescg~La~~vg~e--~r~ 578 (1188)
.++...++.+-|-...||.+|..+..+|++.+.|+.+ ..++|.+.+.+.+. -|-.+..+...++.|+.-.+.. .+-
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~ 173 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM 173 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 3677888888999999999999999999999999988 88999998877655 4999999999999999765322 233
Q ss_pred hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHH
Q 001018 579 SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETT 639 (1188)
Q Consensus 579 slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa 639 (1188)
..++|.+...+-|--+.|..++.+.+..+|..+++.|+- ..+|.++.-+.+| .+|-.|.
T Consensus 174 ~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-~~~~~~~~~~~~p-~~~~~~~ 232 (986)
T 2iw3_A 174 PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-RFIPSLIQCIADP-TEVPETV 232 (986)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-GGHHHHHHHHHCT-THHHHHH
T ss_pred cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-hhHHHHHHHhcCh-hhhHHHH
Confidence 448999999999999999999999999999999998763 3557777777788 4466654
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.68 E-value=0.036 Score=71.31 Aligned_cols=130 Identities=16% Similarity=0.173 Sum_probs=105.2
Q ss_pred hhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHh-hccCCCcchHHHHHHHHHHHHHhhch
Q 001018 895 FEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVT-LGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 895 ~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.|.+.-.++|.++++..|..+.||-++......+...+....+ ..++|+|.+ |.+-..|..|.++...++.++... +
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~ 166 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K 166 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H
Confidence 3555555799999999999999999999999999999999888 889999987 544558999999999999999866 3
Q ss_pred HH---HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Q 001018 974 DM---IVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLS 1026 (1188)
Q Consensus 974 e~---~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~ 1026 (1188)
+. -.-.+.|.+...++|.-..+.-+..+++..+...++..-++-.+|.|++..
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~ 222 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI 222 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH
T ss_pred HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh
Confidence 32 346699999999999999999988888888877776554443345444433
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.62 E-value=0.083 Score=58.35 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=96.2
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHH
Q 001018 896 EEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDM 975 (1188)
Q Consensus 896 e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~ 975 (1188)
+.-...++|.|.+-+.|+...||-.+-..+..+..+.++..+ .|.+.+=...++|++|..++..+..+.+..|..
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v----~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKM----TPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH----HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 333467999999999999999999999999999877665544 455555447789999999999999999998865
Q ss_pred HHHHHH---HHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHH
Q 001018 976 IVDKIR---VQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDY 1017 (1188)
Q Consensus 976 ~~ekl~---~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~ 1017 (1188)
-.+.. +.+..+++|++.+||-++++++..+.-+++..++.+
T Consensus 202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 24466 889999999999999999999999988888876543
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.60 E-value=2.6 Score=52.89 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=78.1
Q ss_pred hHHHHHHHhhcC-C------------Chh-HHHHHHHHHHHHHhhhc-------hhhhh-hhhhhHHHhhccCCCcchHH
Q 001018 901 MVFNILWEMVVS-S------------NID-MKINAANLLKVIVPYIN-------AKVTS-MQVLPALVTLGSDQNLNVKY 958 (1188)
Q Consensus 901 ~iLpiL~~lv~D-~------------~pn-VR~naak~L~~L~~~ig-------~~~ls-~~VlPaLv~LasD~d~dVR~ 958 (1188)
..+|-|.+++.. + .+. -+++++..|.-|+..=+ ...+. ...+|.|..|..+.+..||-
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 456666777661 2 122 28999999999887642 22455 36999999999999999999
Q ss_pred HHHHHHHHHHHhhc---hHHHH---HH---HHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 959 ASIDAFGAVAQHFK---NDMIV---DK---IRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 959 aaieAl~~LA~~l~---~e~~~---ek---l~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
++.+++..|+..-. .+++. .+ =...+..++...+..+|.+++-+|+.+.
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999986432 23431 11 2456677888889999999999999884
No 88
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.21 E-value=0.39 Score=56.92 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=114.9
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc----hhhhhhhhhhHHHhh-ccCCCcchHHHHHHHHHHHHHhh-c-
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN----AKVTSMQVLPALVTL-GSDQNLNVKYASIDAFGAVAQHF-K- 972 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig----~~~ls~~VlPaLv~L-asD~d~dVR~aaieAl~~LA~~l-~- 972 (1188)
.-++|.|..++.++.++||.+++..|.-|+..-+ ...+..-.+|.|+.| .+..+..++..+..++..|+... .
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 3469999999999999999999999999875311 234556789999995 67778999999999999998743 2
Q ss_pred hHHHH--HHHHHHHHHHhcCCCh----hHHHHHHHHHHHhccc--CCH----HHHH-HHHHHHHHhhcCCCCChhhHHHH
Q 001018 973 NDMIV--DKIRVQMDAFLEDGSH----EATVAVVRALAVAVPH--TTE----RLRD-YLLSKIFQLSAVPSSSSDVMRRR 1039 (1188)
Q Consensus 973 ~e~~~--ekl~~~~~slL~D~~~----~vR~~vv~al~~l~p~--~~~----~~r~-~IlP~L~~L~~vpN~~~~~~~R~ 1039 (1188)
...+. ....+.+..+|..+.. .++.+++.+|..|.-+ .++ .+++ -.+|.|..+...++. .-+.
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~----~v~~ 397 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL----TIVS 397 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCH----HHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCCh----HHHH
Confidence 22332 4577888888876643 3788787777776641 223 3444 478888888765543 1244
Q ss_pred HHHHHHHHHHHhhcc-c-cCchhhhhhhHHHHHHHHHhc
Q 001018 1040 ERANAFCESIRALDA-T-ELSATSVRDFLLPAIQNLLKD 1076 (1188)
Q Consensus 1040 ~vAk~l~~a~~aL~~-~-~l~~~~v~~~ilP~L~~L~~D 1076 (1188)
+.+. ++..|.. . ..-..++..-.+|.|..|+..
T Consensus 398 ~A~~----aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 398 NACG----TLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHH----HHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHH----HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 4433 3443431 1 122345566678888888764
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.10 E-value=0.07 Score=58.97 Aligned_cols=168 Identities=12% Similarity=0.071 Sum_probs=126.8
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh------hhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK------VTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~------~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
+.+++|+.--..|.++.|=..+...|..+...++.. .-...++|+|++=..|+.-.||-.+.+.+..+...+.+
T Consensus 86 Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~ 165 (266)
T 2of3_A 86 DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP 165 (266)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH
Confidence 557888887778999999999988888887776442 22468999999999999999999999999888877776
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHH---HHHHHhhcCCCCChhhHHHHHHHHHHHHHHH
Q 001018 974 DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLL---SKIFQLSAVPSSSSDVMRRRERANAFCESIR 1050 (1188)
Q Consensus 974 e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~Il---P~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~ 1050 (1188)
. ++.+.+..-+..+|...|..++..+..+++..+.... ..+ |.+.++.+-+|- .=|-...+++.++|+
T Consensus 166 ~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~-~~l~~~~~ia~ll~D~d~----~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 166 L----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPL-KSLSVEKTVAPFVGDKDV----NVRNAAINVLVACFK 236 (266)
T ss_dssp H----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGG-GGGCHHHHHGGGGGCSSH----HHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcc-ccccchHHHHHHHcCCCH----HHHHHHHHHHHHHHH
Confidence 4 3444555566889999999999999999998887632 344 888888875552 127666778899998
Q ss_pred hhccccCchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHh
Q 001018 1051 ALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMK 1093 (1188)
Q Consensus 1051 aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~k 1093 (1188)
..- . . +..++ ..|+|..+.+|+.=+|
T Consensus 237 ~~G-d---------~----v~k~l---g~L~~~~~~~l~er~~ 262 (266)
T 2of3_A 237 FEG-D---------Q----MWKAA---GRMADKDKSLVEERIK 262 (266)
T ss_dssp HHT-T---------H----HHHHH---CCCCHHHHHHHHHHHH
T ss_pred Hhh-H---------H----HHHHH---hcCCHHHHHHHHHHHh
Confidence 542 1 1 22322 3489999988876554
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.069 Score=58.39 Aligned_cols=176 Identities=13% Similarity=0.050 Sum_probs=119.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh--------hhhhhhhhHHHh-hccCCCcchHHHHHHHHHHHHHhh
Q 001018 901 MVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK--------VTSMQVLPALVT-LGSDQNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~--------~ls~~VlPaLv~-LasD~d~dVR~aaieAl~~LA~~l 971 (1188)
.+.+.+..+++|.+..|-..++..+..++...+.. .....++|.|++ ...|+...+|-.++.++-.++...
T Consensus 55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999999998876643 234678888886 578999999999999998888765
Q ss_pred ch-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHH------HHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 001018 972 KN-DMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERL------RDYLLSKIFQLSAVPSSSSDVMRRRERANA 1044 (1188)
Q Consensus 972 ~~-e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~------r~~IlP~L~~L~~vpN~~~~~~~R~~vAk~ 1044 (1188)
+. ..+ ...+...+..+++.+|..++..+..++...+... +..+++.+.++..-+|. . =|-...+.
T Consensus 135 ~~~~~~----~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~--~--VR~aA~~l 206 (278)
T 4ffb_C 135 TSITQS----VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDR--N--VRSQTMNL 206 (278)
T ss_dssp SSSHHH----HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSH--H--HHHHHHHH
T ss_pred CcHHHH----HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcH--H--HHHHHHHH
Confidence 53 333 3345567889999999999999999876654432 22455566666653332 1 18777778
Q ss_pred HHHHHHhhccccCchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHhhccC
Q 001018 1045 FCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSG 1097 (1188)
Q Consensus 1045 l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~ke~~~ 1097 (1188)
+.++|+-+-.. + +.+. ....+.+.|.+...|+.......|
T Consensus 207 ~~~ly~~~G~~----------~-~~~~--~~~l~~lkp~~~k~le~~f~k~~~ 246 (278)
T 4ffb_C 207 IVEIYKVTGNN----------S-DLLE--EILFKKLKPIQVKDLHKLFAKVGD 246 (278)
T ss_dssp HHHHHTC------------------------CTTSSCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhCcc----------h-hhhh--hhhhhcCCHHHHHHHHHHHHhcCC
Confidence 88888744311 1 1111 112356778888888776655544
No 91
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.03 E-value=6.8 Score=51.79 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=92.1
Q ss_pred ChhhHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 001018 496 DTSTRDSLTHTLFNLIK-------RPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGEL 568 (1188)
Q Consensus 496 ~~~~R~~Ll~ll~nLiK-------dddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~L 568 (1188)
++..|..++..+++.+. ++.+.+|..++..++.||+.-.| ..+.+++|.+.+.++. .+..+..+...+..+
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 45566666666655543 25699999999999999999877 4478899998887764 334444455555555
Q ss_pred Hhh------hChhhhhh-----------hhHHHHHHhhcC-------------------CcHHHHHHHHHHHHhhcccCC
Q 001018 569 AEF------VRPEIRDS-----------LILSIVQQLVED-------------------SATVVREAAARNLALLLPLFP 612 (1188)
Q Consensus 569 a~~------vg~e~r~s-----------lLL~~LqqL~eD-------------------~e~~VR~aAAksL~~l~~~l~ 612 (1188)
.+- ... .+.. .|++.+.++.++ ....++.++.+.+.....-++
T Consensus 161 ~Eev~~~~~~~~-~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~ 239 (1204)
T 3a6p_A 161 AEDVVTFQTLPP-QRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239 (1204)
T ss_dssp HHHHHTSCCSCH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHHccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Confidence 421 111 1211 344555544432 234577778887776666555
Q ss_pred Cchhhh---hHHHHHHHhccCCChhHHHHHHHhhHHHH
Q 001018 613 NTDKYF---KVEDLMFQLVCDPSGVVVETTFKELLPAV 647 (1188)
Q Consensus 613 ~~d~~~---qi~~~f~~Ll~D~s~~Vr~aa~~~Llpal 647 (1188)
-..... .+.+++..++.| +.+|.+|++.|.-.+
T Consensus 240 ~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~ 275 (1204)
T 3a6p_A 240 MSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAV 275 (1204)
T ss_dssp HHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHH
Confidence 333222 488888888886 578888888873333
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.87 E-value=0.34 Score=52.53 Aligned_cols=197 Identities=12% Similarity=0.124 Sum_probs=131.9
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch---hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh--hchH
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA---KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH--FKND 974 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~---~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~--l~~e 974 (1188)
+..+.++..++.|..+-||.|+...++.+.+-.+. ...-+.++|.++++..++|-+|-.-++++++.|... ++++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 44788899999999999999999999999887433 244578999999999999999999999999999986 5666
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCCChhhHHHHH-HHHHHHHHHHhhc
Q 001018 975 MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRE-RANAFCESIRALD 1053 (1188)
Q Consensus 975 ~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~IlP~L~~L~~vpN~~~~~~~R~~-vAk~l~~a~~aL~ 1053 (1188)
.| .++..++......++..++..++-.++.+ +.+++.- .|...|..|..-+|. |.- +|=.++-.+.+-+
T Consensus 112 ~y-~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~--~V~~~l~sLl~Skd~------~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TF-LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSK--LVRTYINELVVSPDL------YTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HH-HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCH--HHHHHHHHHHTCSSH------HHHHHHHHHHHHHGGGC
T ss_pred HH-HHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchH--HHHHHHHHHHhCCCh------hHHHHHHHHHHHhhccc
Confidence 66 67999999999999999999999999999 4443211 233334444455564 322 2222222222222
Q ss_pred cccCchhhhhhhHHHHHHHHHhccCCCChHHHHHHHHHHhhc-----cCCchhhhhhhhhhhccc
Q 001018 1054 ATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDR-----SGGTLETISKVMGAHLGI 1113 (1188)
Q Consensus 1054 ~~~l~~~~v~~~ilP~L~~L~~D~d~l~~~~k~~l~~i~ke~-----~~~~~~~~~~~~~~~~~~ 1113 (1188)
.++ -+.+.|.-.+..|++-. ||--++-.-..+-+- -|.++.++.|+.-+-=|+
T Consensus 182 ---~D~-~i~~~I~~eI~elL~~e---D~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l 239 (265)
T 3b2a_A 182 ---ADS-GHLTLILDEIPSLLQND---NEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGL 239 (265)
T ss_dssp ---SSC-CCGGGTTTTHHHHHTCS---CHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHG
T ss_pred ---CCH-HHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHH
Confidence 112 23344556677777633 555444322222222 245566666665443333
No 93
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.61 E-value=0.12 Score=60.70 Aligned_cols=172 Identities=14% Similarity=0.061 Sum_probs=116.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhh---chhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh---hchHHH
Q 001018 903 FNILWEMVVSSNIDMKINAANLLKVIVPYI---NAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH---FKNDMI 976 (1188)
Q Consensus 903 LpiL~~lv~D~~pnVR~naak~L~~L~~~i---g~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~---l~~e~~ 976 (1188)
+|.+..++.++.+.+|+.++..|..+...- ....+..-.+|.|+.|.+.++..++..+..+|..|+.. .....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 678888999999999999999999997432 22567788899999999999999999999999999863 111122
Q ss_pred HHHHHHHHHHHhc-CCChhHHHHHHHHHHHhcccCCHH--HHHHHHHHHHHhhcC--------CCCChhhH--HHHHHHH
Q 001018 977 VDKIRVQMDAFLE-DGSHEATVAVVRALAVAVPHTTER--LRDYLLSKIFQLSAV--------PSSSSDVM--RRRERAN 1043 (1188)
Q Consensus 977 ~ekl~~~~~slL~-D~~~~vR~~vv~al~~l~p~~~~~--~r~~IlP~L~~L~~v--------pN~~~~~~--~R~~vAk 1043 (1188)
.....|.+..+|. .++..++..++.+|..|.-.-+.+ +++-.+|.|..+... ++. ... ...++.+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~--~~~e~~~~~v~~ 161 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSN--MSREVVDPEVFF 161 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-----------CCCHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccc--hhcccccHHHHH
Confidence 3446788888998 778999999999999998652222 222577888887732 211 000 0112333
Q ss_pred HHHHHHHhhccccCchhhhhh--hHHHHHHHHHhc
Q 001018 1044 AFCESIRALDATELSATSVRD--FLLPAIQNLLKD 1076 (1188)
Q Consensus 1044 ~l~~a~~aL~~~~l~~~~v~~--~ilP~L~~L~~D 1076 (1188)
.-+.+++.|...+-..+.+.+ .++|.|-.|+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 334455555433223334443 578888887764
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.50 E-value=0.38 Score=52.16 Aligned_cols=144 Identities=16% Similarity=0.089 Sum_probs=117.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC---chhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh-hhh
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVG---EMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE-IRD 578 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg---~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e-~r~ 578 (1188)
-+.+++.|+.++|+.+|..+...+..+-+.+. ..+.-++++|-+-++..++.+.|-+-+..+++.+..-++-. ..-
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 67889999999999999999999999988863 35666789999999999999999999999999998775532 223
Q ss_pred hhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc
Q 001018 579 SLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 579 slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~ 651 (1188)
.-+.-.+..+.+.+.+.+|.-+|+.++.+ ... ..+..+......|+.-...+|..+|...| -.++...
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L-~eia~~S 181 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLF-LNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHH-HHHGGGC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHH-HHhhccc
Confidence 34678888999999999999999999998 222 23457899999999888999999998776 4444433
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.13 E-value=0.53 Score=53.84 Aligned_cols=117 Identities=9% Similarity=0.111 Sum_probs=90.4
Q ss_pred HhHHHHHHHhhcCCCh----hHHHHHHHHHHHHHhhh--ch----hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHH
Q 001018 900 TMVFNILWEMVVSSNI----DMKINAANLLKVIVPYI--NA----KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQ 969 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~p----nVR~naak~L~~L~~~i--g~----~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~ 969 (1188)
.-.+|.|.+++.+..+ .|+.+++..|..|+.++ +. ..+..-.+|.|+.|..+.+..|+..+.-+|..|+.
T Consensus 213 ~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 4578999999987765 49999999888887531 11 24455689999999999999999999999998874
Q ss_pred h--hchHHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH
Q 001018 970 H--FKNDMI-VDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD 1016 (1188)
Q Consensus 970 ~--l~~e~~-~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~ 1016 (1188)
. -....+ .....|.+..++.+++..++..++.+|..|.-.-+..+++
T Consensus 293 ~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 293 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 2 112223 3446788888999999999999999999999887777666
No 96
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.06 E-value=8.1 Score=51.06 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHHHHhhhchh-hhhhhhhhHHHhhccC------------CCcchHHHHHHHHHHHHHhhchHH--H
Q 001018 912 SSNIDMKINAANLLKVIVPYINAK-VTSMQVLPALVTLGSD------------QNLNVKYASIDAFGAVAQHFKNDM--I 976 (1188)
Q Consensus 912 D~~pnVR~naak~L~~L~~~ig~~-~ls~~VlPaLv~LasD------------~d~dVR~aaieAl~~LA~~l~~e~--~ 976 (1188)
...|.+|..++..+..+...+... ..-..++..|.....| .+-+||.+|..++..++..++... +
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~ 622 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPN 622 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 358899999999999999887632 1112333333333334 234899999999999999887654 3
Q ss_pred HHHHHHHHHHHhcCCC---hhHHHHHHHHHHHhcccCCH-----HHHH-HHHHHHHHhh
Q 001018 977 VDKIRVQMDAFLEDGS---HEATVAVVRALAVAVPHTTE-----RLRD-YLLSKIFQLS 1026 (1188)
Q Consensus 977 ~ekl~~~~~slL~D~~---~~vR~~vv~al~~l~p~~~~-----~~r~-~IlP~L~~L~ 1026 (1188)
.+.+...+...+.... ..=++....++..++..+++ .+.+ .+-|.+.++.
T Consensus 623 ~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 623 FDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777665333 34455555566555433222 3344 5666665544
No 97
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.90 E-value=0.14 Score=58.55 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=114.7
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhc----hhhhhhhhhhHHHhh-ccCCCcchHHHHHHHHHHHHHhh-c-
Q 001018 900 TMVFNILWEMVVSSNIDMKINAANLLKVIVPYIN----AKVTSMQVLPALVTL-GSDQNLNVKYASIDAFGAVAQHF-K- 972 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig----~~~ls~~VlPaLv~L-asD~d~dVR~aaieAl~~LA~~l-~- 972 (1188)
.-++|.|..++.++.++||.+++..|..|+..-+ ...+..-.+|.|+.| .+..+..++..+..++..|+... +
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 3469999999999999999999999999975311 234556789999995 67788999999999999998733 2
Q ss_pred hHHHH--HHHHHHHHHHhcCCCh----hHHHHHHHHHHHhccc--CCHH----HHH-HHHHHHHHhhcCCCCChhhHHHH
Q 001018 973 NDMIV--DKIRVQMDAFLEDGSH----EATVAVVRALAVAVPH--TTER----LRD-YLLSKIFQLSAVPSSSSDVMRRR 1039 (1188)
Q Consensus 973 ~e~~~--ekl~~~~~slL~D~~~----~vR~~vv~al~~l~p~--~~~~----~r~-~IlP~L~~L~~vpN~~~~~~~R~ 1039 (1188)
...+. ....+.+..+|.++.. .++..++.+|..+.-. .+++ +++ -.+|.|..+...++. .-+.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~ 281 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL----TIVS 281 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH----HHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh----HHHH
Confidence 22332 4577888888876643 4777777777776541 2233 344 478888888765543 1233
Q ss_pred HHHHHHHHHHHhhcc-cc-CchhhhhhhHHHHHHHHHhcc
Q 001018 1040 ERANAFCESIRALDA-TE-LSATSVRDFLLPAIQNLLKDA 1077 (1188)
Q Consensus 1040 ~vAk~l~~a~~aL~~-~~-l~~~~v~~~ilP~L~~L~~D~ 1077 (1188)
+. +.++..|.. .. .-..++..-.+|.|..|+...
T Consensus 282 ~A----~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~ 317 (354)
T 3nmw_A 282 NA----CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 317 (354)
T ss_dssp HH----HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HH----HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 44 344444442 11 223355566789998888643
No 98
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.71 E-value=0.83 Score=47.91 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=124.5
Q ss_pred hhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhh
Q 001018 756 DCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGE 835 (1188)
Q Consensus 756 ~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~ 835 (1188)
.++-.++.+ +.|.-|-|+.-....+..+++..-.- .+-++...+.+++-.+. | ++ -++++.
T Consensus 32 ~~l~~lI~~---LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEa--I-pl-----------tqeIa~ 92 (253)
T 2db0_A 32 SVLKKLIEL---LDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEA--I-PL-----------TQEIAK 92 (253)
T ss_dssp HHHHHHHHH---TTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCS--H-HH-----------HHHHHH
T ss_pred HHHHHHHHH---hccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhccc--C-ch-----------HHHHHH
Confidence 355555555 59999999999999999999876433 33344455666544432 1 10 122322
Q ss_pred hhhhhch-hhHHhhhhcCCCCcchhhhHHHHHHHhhccccccccc----chhhhHHHHHHhhh-chhhHHHhHHHHHHHh
Q 001018 836 RLATMGV-LPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTV----KCNAEIVNAVRFLC-TFEEHHTMVFNILWEM 909 (1188)
Q Consensus 836 ~l~~~~l-LP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v----~~~p~ll~ai~~Lg-~~e~~~~~iLpiL~~l 909 (1188)
.+-..+. =|-++.+++|.. ..| ++. -++. +..++..+. .+..+...+.-=+..|
T Consensus 93 a~G~la~i~Pe~v~~vVp~l-----fan--------------yrigd~kikIn-~~yaLeeIaranP~l~~~v~rdi~sm 152 (253)
T 2db0_A 93 AFGQMAKEKPELVKSMIPVL-----FAN--------------YRIGDEKTKIN-VSYALEEIAKANPMLMASIVRDFMSM 152 (253)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-----HHH--------------SCCCSHHHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhHHHHhCHHHHHhhHHHH-----HHH--------------HhcCCccceec-HHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2222222 233333344321 001 111 0111 223332222 3455666677778888
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHH---H
Q 001018 910 VVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMD---A 986 (1188)
Q Consensus 910 v~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~---s 986 (1188)
+.++.-.=|+.+.+-+..++.. +.+.+ .--+|.|..|..|.|--||.-+.+++..+|+.-. |+++.+. .
T Consensus 153 ltskd~~Dkl~aLnFi~alGen-~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np------klRkii~~kl~ 224 (253)
T 2db0_A 153 LSSKNREDKLTALNFIEAMGEN-SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLND------KLRKVVIKRLE 224 (253)
T ss_dssp TSCSSHHHHHHHHHHHHTCCTT-THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHHhcc-Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH------HHHHHHHHHHH
Confidence 8888888888888766665432 22333 4568999999999999999999999999996322 2333333 2
Q ss_pred HhcCCChhHHHHHHHHHHHhc
Q 001018 987 FLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 987 lL~D~~~~vR~~vv~al~~l~ 1007 (1188)
=++|++-.+.+.|..+++++.
T Consensus 225 e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 225 ELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HCCCSCHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHH
Confidence 367888899999999998875
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.99 E-value=0.86 Score=52.31 Aligned_cols=135 Identities=12% Similarity=0.020 Sum_probs=103.3
Q ss_pred HHHHHHHHH---HhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhh
Q 001018 500 RDSLTHTLF---NLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEI 576 (1188)
Q Consensus 500 R~~Ll~ll~---nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~ 576 (1188)
..+...+|| .++..+|...|++.--.+..+++. ++..- .....+..=.+|..+-+|-++.-.++.+. .++
T Consensus 63 ~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~---~~~- 135 (355)
T 3tjz_B 63 TTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT---DST- 135 (355)
T ss_dssp HHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC---CTT-
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC---CHH-
Confidence 445556676 589999999999999999998887 33332 55666666677788888888877777764 222
Q ss_pred hhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 577 RDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 577 r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
-...+.+.+++...|+.+-||.+|+=+...+...-++ ....+.+-...+++|..+.|...|+..+
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3445688899999999999999999998888866543 3446777888899999999998776554
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.92 E-value=0.23 Score=59.65 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCh
Q 001018 914 NIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSH 993 (1188)
Q Consensus 914 ~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~ 993 (1188)
++-||.++|..|..+ ..++.+ -.++=.++.+...+.|.||....-++..+...+.. .+.+.+.+...|.|++=
T Consensus 241 VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSH
T ss_pred eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCccc
Confidence 568999999999999 788777 45666666666899999999998888887322332 58899999999999998
Q ss_pred hHHHHHHHHHHHhc
Q 001018 994 EATVAVVRALAVAV 1007 (1188)
Q Consensus 994 ~vR~~vv~al~~l~ 1007 (1188)
-||-.++.+|.-++
T Consensus 314 DVRAVAAetLiPIA 327 (800)
T 3oc3_A 314 DIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhhhc
Confidence 99988888877666
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.83 E-value=0.64 Score=55.94 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCch------hhHhhHHHHHHHHhhc---Cc------hhHHHHHHHHHHH
Q 001018 503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEM------RTEMELLPQCWEQINH---MY------EERRLLVAQSCGE 567 (1188)
Q Consensus 503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~e------rt~~ELLP~l~eli~D---d~------dEVRlLvAescg~ 567 (1188)
+...|..-+=||.=.+|.-|+-++..|.+..|.. .-.+-.+-.|--++-| || -=||=.+|+.+|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5667777777899999999999999999988731 1112233333333333 12 3489999999999
Q ss_pred HHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHH
Q 001018 568 LAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAV 647 (1188)
Q Consensus 568 La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpal 647 (1188)
+ .+++++ -..|..++ .......|+||...-=-|.-+...+.. ...+.+.++..+.|..+.||++|+..|.|..
T Consensus 255 L-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 255 I-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp H-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred H-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 9 888777 23333333 345888999999876555555444443 6788999999999999999999999997776
Q ss_pred HhcccchHHHHHHHHHHH
Q 001018 648 INWGSKLDHILRVLLSYI 665 (1188)
Q Consensus 648 a~~~~~~~~ll~~ll~~L 665 (1188)
.......++..+-..|
T Consensus 328 --~p~~l~~LL~iLWd~L 343 (800)
T 3oc3_A 328 --ITDSLDLVLEKCWKNI 343 (800)
T ss_dssp --CSSTHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHh
Confidence 2223344444444333
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.77 E-value=0.56 Score=50.69 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=110.3
Q ss_pred hHHHHHHHhhcCCCh--hHHHHHHHHHHHHHhh---hchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh-h-ch
Q 001018 901 MVFNILWEMVVSSNI--DMKINAANLLKVIVPY---INAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH-F-KN 973 (1188)
Q Consensus 901 ~iLpiL~~lv~D~~p--nVR~naak~L~~L~~~---ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~-l-~~ 973 (1188)
.-+|.+.+++.++.+ .++.+++..+..++.. .....+..-.+|.|+.|...++.+||..+..||.-|+.. - ..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 346778888888887 9999999998888743 223455667889999999999999999999999999862 2 22
Q ss_pred HHHH-HHHHHHHHHHhcC-CChhHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHhhcCCC------------CChhhHH
Q 001018 974 DMIV-DKIRVQMDAFLED-GSHEATVAVVRALAVAVPHTT--ERLRDYLLSKIFQLSAVPS------------SSSDVMR 1037 (1188)
Q Consensus 974 e~~~-ekl~~~~~slL~D-~~~~vR~~vv~al~~l~p~~~--~~~r~~IlP~L~~L~~vpN------------~~~~~~~ 1037 (1188)
..+. .-..|.+..+|.. ++..++-+++.+|..+.-.-. ..++..-+|.|..+..+|. -..+..-
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 2333 3367777788874 678899998888887753322 2333345666665433221 1112222
Q ss_pred HHHHHHHHHHHHHhhcccc-Cchhhhhh--hHHHHHHHHHhc
Q 001018 1038 RRERANAFCESIRALDATE-LSATSVRD--FLLPAIQNLLKD 1076 (1188)
Q Consensus 1038 R~~vAk~l~~a~~aL~~~~-l~~~~v~~--~ilP~L~~L~~D 1076 (1188)
+.+.+ .+++.|.+.. -....+++ -++|.|..+++.
T Consensus 168 ~~na~----~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 168 FYNVT----GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHHH----HHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
Confidence 44443 3445555432 23444543 366777776653
No 103
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.52 E-value=6.2 Score=41.50 Aligned_cols=173 Identities=22% Similarity=0.210 Sum_probs=114.0
Q ss_pred chhHHHHHHhhhcccchhcchh-----hHHhHhhH---HHHHhhc--CCChhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001018 457 GLGTIQILADALPKIVPYVLIN-----HREELLPL---IMCAIER--HPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDAC 526 (1188)
Q Consensus 457 ~~~~v~lls~~lP~Ivp~V~~~-----~R~ellPl---i~~aa~~--h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa~~l 526 (1188)
..+++--++..+|-.+...... ++.|-+|+ |.++.-. ...+..-+....++|.-+.=-+|.-|.++..++
T Consensus 52 Al~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaL 131 (253)
T 2db0_A 52 AISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYAL 131 (253)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHH
Confidence 3556666677777665542211 23333555 2233222 124556677888888888888999999999999
Q ss_pred HHHHHHhCchhhHhhHHHHH----HHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHH
Q 001018 527 VTLAKNVGEMRTEMELLPQC----WEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAAR 602 (1188)
Q Consensus 527 ~~iA~~lg~ert~~ELLP~l----~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAk 602 (1188)
..||.+-+ +++|.+ .-..+++.++=|+.+-.-.++++.- +-.+..-.||=|..|.-|+..+||..|++
T Consensus 132 eeIaranP------~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv~PfLprL~aLL~D~deiVRaSaVE 203 (253)
T 2db0_A 132 EEIAKANP------MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNPFLPRIINLLHDGDEIVRASAVE 203 (253)
T ss_dssp HHHHHHCH------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHHGGGHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHhCh------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--CccccCcchHHHHHHHcCcchhhhHHHHH
Confidence 99998653 233333 2245567777777666555555421 23455667999999999999999999999
Q ss_pred HHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHH
Q 001018 603 NLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTF 640 (1188)
Q Consensus 603 sL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~ 640 (1188)
.|..++..= .+...++.--+.=+.|++.-|-....
T Consensus 204 tL~~lA~~n---pklRkii~~kl~e~~D~S~lv~~~V~ 238 (253)
T 2db0_A 204 ALVHLATLN---DKLRKVVIKRLEELNDTSSLVNKTVK 238 (253)
T ss_dssp HHHHHHTSC---HHHHHHHHHHHHHCCCSCHHHHHHHH
T ss_pred HHHHHHHcC---HHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999998653 34556666666677888887765543
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=91.20 E-value=1.7 Score=53.85 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=67.2
Q ss_pred HHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh----hhhhhhhhH-HHhhccCCCcchHHHHHHHHHHHHHhhch
Q 001018 899 HTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK----VTSMQVLPA-LVTLGSDQNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 899 ~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~----~ls~~VlPa-Lv~LasD~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
.+.++|++- .+.++.|++|..++..|..|+. +.. .+...+++. |..|..|++..||.++..||.-|+..-|.
T Consensus 33 ~~~i~Pll~-~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPVLK-DLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHHHH-HHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHH-HcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 468899875 5789999999999999999985 443 455666654 56789999999999999999999988887
Q ss_pred HHHHH----HHHHHHHHHhc
Q 001018 974 DMIVD----KIRVQMDAFLE 989 (1188)
Q Consensus 974 e~~~e----kl~~~~~slL~ 989 (1188)
+.... .+.+.+..++.
T Consensus 110 d~~~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHH
Confidence 55543 15555555554
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=91.14 E-value=1.2 Score=55.05 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=59.9
Q ss_pred hhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchH--HHHHH-HHHHHHHHhcCCChhHHHHHHHHHHHhcccCCH-
Q 001018 937 TSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND--MIVDK-IRVQMDAFLEDGSHEATVAVVRALAVAVPHTTE- 1012 (1188)
Q Consensus 937 ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e--~~~ek-l~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~- 1012 (1188)
....|+|.|..| +.++.++|..+..||..|++.-... ...++ |.+.+..+|.|++..||.+.+.+|..|+-.-++
T Consensus 32 ~~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 345788877766 4588889999999998888643332 33344 455667788888888999988888887654443
Q ss_pred ---HHHH-HHHHHHHHh
Q 001018 1013 ---RLRD-YLLSKIFQL 1025 (1188)
Q Consensus 1013 ---~~r~-~IlP~L~~L 1025 (1188)
.+.. -|+|.|..+
T Consensus 111 ~~~~l~~~~il~~L~~~ 127 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHA 127 (684)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHH
Confidence 2344 566655544
No 106
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.02 E-value=0.9 Score=49.90 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=86.9
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV 977 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ 977 (1188)
..+.+..++-+...... +.|+...+..+.+.=.-++. +-.+++|.+..++.|++..||-++++.|...... ..++.
T Consensus 13 ~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~ 88 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELL 88 (257)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34666667666666555 68999888888876555555 5588999999999999999999999998766522 23567
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccC
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
-++.+.+..++.|.++.+.-.++.+++.+.|.+
T Consensus 89 ~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~ 121 (257)
T 3gs3_A 89 PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNG 121 (257)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999887765
No 107
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.89 E-value=2.1 Score=49.62 Aligned_cols=109 Identities=12% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHH
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIV 977 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ 977 (1188)
+.+.++.+|-+...... +.|+...+..+.+.=.-+.. +-..++|-|..++.|++..||-++++.|...+. ...++.
T Consensus 23 ~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~ 98 (386)
T 3o2t_A 23 TSERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELL 98 (386)
T ss_dssp HHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34556666666655443 57888888888765444554 447899999999999999999999998876653 233456
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhcccC
Q 001018 978 DKIRVQMDAFLEDGSHEATVAVVRALAVAVPHT 1010 (1188)
Q Consensus 978 ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~ 1010 (1188)
-++.+.+..++.|.++.+.-.++.+++.+.|.+
T Consensus 99 ~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~ 131 (386)
T 3o2t_A 99 LKLIANLNMLLRDENVNVVKKAILTMTQLYKVA 131 (386)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 778888888999999988888888888887654
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.03 E-value=50 Score=39.29 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=74.8
Q ss_pred HhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhc
Q 001018 549 QINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLV 628 (1188)
Q Consensus 549 li~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll 628 (1188)
.+. -....+.|+|+-...+-++++.-. ..=+..+-.||+|++.-||..|++.|..||.. +....+..++.+|+
T Consensus 37 ~~k-g~~k~K~LaaQ~I~kffk~FP~l~--~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 37 GVK-GGTKEKRLAAQFIPKFFKHFPELA--DSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLL 109 (507)
T ss_dssp GGG-SCHHHHHHHHHHHHHHGGGCGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHT
T ss_pred hcC-CCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHH
Confidence 344 346777888998888888875322 22256677899999999999999999999987 34668889999999
Q ss_pred cCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHh
Q 001018 629 CDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYIL 666 (1188)
Q Consensus 629 ~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~ 666 (1188)
+-.++....+....| -.+.+. +....+..++.+|.
T Consensus 110 qtdd~~E~~~V~~sL-~sllk~--Dpk~tl~~lf~~i~ 144 (507)
T 3u0r_A 110 QTDDSAEFNLVNNAL-LSIFKM--DAKGTLGGLFSQIL 144 (507)
T ss_dssp TCCCHHHHHHHHHHH-HHHHHH--CHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHH-HHHHhc--ChHHHHHHHHHHHc
Confidence 966555555554444 233332 34455566677763
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.75 E-value=90 Score=40.83 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=86.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCc--hhHHHHHHHHHHHHHhhhChhhhh---hhhHHHHH
Q 001018 512 KRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMY--EERRLLVAQSCGELAEFVRPEIRD---SLILSIVQ 586 (1188)
Q Consensus 512 Kdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~--dEVRlLvAescg~La~~vg~e~r~---slLL~~Lq 586 (1188)
||-+.......++.|-.+..+++++.+..-+++.+.++++... |..+=...=+.|+++..+.++... ..+++.|-
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll 527 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLL 527 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHh
Confidence 4444446666777776666789999999999998888776544 777777777889998776654332 33666666
Q ss_pred HhhcCC-----cHHHHHHHHHHHHhhcccCCC-chhhhhHHHHHHHhccCCChhHHHHHHHhh
Q 001018 587 QLVEDS-----ATVVREAAARNLALLLPLFPN-TDKYFKVEDLMFQLVCDPSGVVVETTFKEL 643 (1188)
Q Consensus 587 qL~eD~-----e~~VR~aAAksL~~l~~~l~~-~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~L 643 (1188)
+|++.+ -++||..+.=-++.....+.. ......++..++..+.|+.+.|..+|+..|
T Consensus 528 ~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af 590 (1073)
T 3gjx_A 528 GLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTF 590 (1073)
T ss_dssp HHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777654 456666432223332222221 222334566666778899999999998877
No 110
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=85.67 E-value=0.22 Score=46.13 Aligned_cols=45 Identities=29% Similarity=0.334 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHcCCcccceeccccccCCCCCCCCCCCCCCChH-HHHH
Q 001018 153 DLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDA-LRHY 200 (1188)
Q Consensus 153 ~LN~lv~eYLl~~~Ykltsitf~dE~~dqd~e~W~dv~~~~P~~-L~~~ 200 (1188)
-+||||==||...||.-||-||..|- ....|+--+..|||. |..+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es---~i~~~~~~~~~VppgaLVsl 52 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIES---HISQSNINGTLVPPAALISI 52 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT---TGGGSCCCGGGSCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh---cCCccccccccCCcchHHHH
Confidence 38999999999999999999999996 344554445668755 4443
No 111
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.80 E-value=64 Score=37.34 Aligned_cols=112 Identities=9% Similarity=0.108 Sum_probs=85.0
Q ss_pred chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh---
Q 001018 894 TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH--- 970 (1188)
Q Consensus 894 ~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~--- 970 (1188)
++..+...++|-++.+..|+...||--++.-++..... ..+.+ ..+++.|..|.+|.+..|--.+|.+...+-..
T Consensus 56 ~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~-~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 56 KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELL-LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999999888753 44554 88999999999999999988888877654421
Q ss_pred -----hch----H---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001018 971 -----FKN----D---MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAV 1007 (1188)
Q Consensus 971 -----l~~----e---~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~ 1007 (1188)
-+. + ....+++..+.++.+..+..+|+.++|-+.+++
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 111 1 123445666666666678899999999888865
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.11 E-value=6.2 Score=51.45 Aligned_cols=129 Identities=13% Similarity=0.083 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhC--chhhHhh----HHHHHHHHhhcCchhHHHHHHHHHHHHHhh
Q 001018 502 SLTHTLFNLIKR----PDEKQRRIIMDACVTLAKNVG--EMRTEME----LLPQCWEQINHMYEERRLLVAQSCGELAEF 571 (1188)
Q Consensus 502 ~Ll~ll~nLiKd----ddp~vRr~aa~~l~~iA~~lg--~ert~~E----LLP~l~eli~Dd~dEVRlLvAescg~La~~ 571 (1188)
+++..|+.|++. .++.+|..++=++++++...- ...+..+ +..++.+.++....+.+++...++|.++.-
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 566778888876 467889999988888876432 1122223 333444555555677788889999998742
Q ss_pred hChhhhhhhhHHHHHHhhc-------CCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhcc--CCChhHHHHHHHh
Q 001018 572 VRPEIRDSLILSIVQQLVE-------DSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVC--DPSGVVVETTFKE 642 (1188)
Q Consensus 572 vg~e~r~slLL~~LqqL~e-------D~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~--D~s~~Vr~aa~~~ 642 (1188)
. .++.|..++. +...+||-+|+.+|..+....+ ..+.++++++.. ....+||.+|+..
T Consensus 471 ---~-----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~ 537 (1056)
T 1lsh_A 471 ---N-----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIV 537 (1056)
T ss_dssp ---G-----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred ---h-----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 1 2445555432 3457999999999988874322 257888888884 4588999999665
Q ss_pred h
Q 001018 643 L 643 (1188)
Q Consensus 643 L 643 (1188)
+
T Consensus 538 L 538 (1056)
T 1lsh_A 538 F 538 (1056)
T ss_dssp H
T ss_pred H
Confidence 5
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=77.00 E-value=7 Score=50.65 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=57.3
Q ss_pred hHHhHhhHHHHHhhcCC---ChhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHh
Q 001018 479 HREELLPLIMCAIERHP---DTSTRDSLTHTLFNLIKRPD-EKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQI 550 (1188)
Q Consensus 479 ~R~ellPli~~aa~~h~---~~~~R~~Ll~ll~nLiKddd-p~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli 550 (1188)
.|.-.++++....++|. ....+..++.++..++.|++ .+||.+|+..|..+-.+.++.....+++..+.+..
T Consensus 817 ~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 78888888877777655 55688899999999999999 99999999999999877645333447777676544
No 114
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=76.34 E-value=14 Score=39.84 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHHHHHHHhCchh---hHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhh---Chh
Q 001018 504 THTLFNLIKRPDE--KQRRIIMDACVTLAKNVGEMR---TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFV---RPE 575 (1188)
Q Consensus 504 l~ll~nLiKdddp--~vRr~aa~~l~~iA~~lg~er---t~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~v---g~e 575 (1188)
+..+.++++.+++ +++..++..+..++..-.+.+ .+.-.+|.+-+++..+.++++..++.++..|+.-- ...
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3456677787877 888888888877775432222 23346898989888899999999999998887421 111
Q ss_pred hhhhhhHHHHHHhhc-CCcHHHHHHHHHHHHhhcc
Q 001018 576 IRDSLILSIVQQLVE-DSATVVREAAARNLALLLP 609 (1188)
Q Consensus 576 ~r~slLL~~LqqL~e-D~e~~VR~aAAksL~~l~~ 609 (1188)
+...=-+|+|-+|+. ...+.||+.|+..|-.++.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 222235788888776 5789999999977777763
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=72.45 E-value=1.1e+02 Score=33.47 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhh
Q 001018 498 STRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIR 577 (1188)
Q Consensus 498 ~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r 577 (1188)
+.|+.+..++-.--...+ .+|.........++-.-.|. .-.+++|.+-+++.|..-+||-.+|+=+++...- ....
T Consensus 12 ~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l 87 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVEL 87 (257)
T ss_dssp HHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGG
T ss_pred cHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHH
Confidence 355666555554444333 57777777777776665454 5566777777777888899999999877665521 3455
Q ss_pred hhhhHHHHHHhhcCCcHHHHHHHHHHHHh
Q 001018 578 DSLILSIVQQLVEDSATVVREAAARNLAL 606 (1188)
Q Consensus 578 ~slLL~~LqqL~eD~e~~VR~aAAksL~~ 606 (1188)
...+++.|..|++|+.+.|-..|+...+.
T Consensus 88 ~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 88 LPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66678899999999999888888766554
No 116
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=71.40 E-value=6.8 Score=50.81 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=81.0
Q ss_pred HhHHHHHHHhhcCCCh-hHHHH-HHHHHHHHHhh-hchhhhhhhhhhHHHhhcc-CCCcchHHHHHHHHHHHHHh----h
Q 001018 900 TMVFNILWEMVVSSNI-DMKIN-AANLLKVIVPY-INAKVTSMQVLPALVTLGS-DQNLNVKYASIDAFGAVAQH----F 971 (1188)
Q Consensus 900 ~~iLpiL~~lv~D~~p-nVR~n-aak~L~~L~~~-ig~~~ls~~VlPaLv~Las-D~d~dVR~aaieAl~~LA~~----l 971 (1188)
..++|.+..|..+..- +..-. +...|..|+.. +..+.+ ..++-+|.+.+. ++.| +|.+++..+..+... +
T Consensus 759 ~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~-~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 759 DYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHV-AAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHH-HHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 3477777777665532 22222 33456665444 333333 456667777666 7899 999999999888763 4
Q ss_pred chHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhcccC-CHHHHHHHHHHH
Q 001018 972 KNDMIVDKIRVQMDAFLEDGS-HEATVAVVRALAVAVPHT-TERLRDYLLSKI 1022 (1188)
Q Consensus 972 ~~e~~~ekl~~~~~slL~D~~-~~vR~~vv~al~~l~p~~-~~~~r~~IlP~L 1022 (1188)
+.+.. .+|...+.++|.|++ ..||..+..+|+.++... ....++.++..+
T Consensus 837 ~~~~~-~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f 888 (997)
T 1vsy_5 837 TEEEK-NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERF 888 (997)
T ss_dssp CTTHH-HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 54443 678899999999999 999999999999999665 434444443333
No 117
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.94 E-value=38 Score=32.72 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=22.3
Q ss_pred chhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhh
Q 001018 246 SDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALK 296 (1188)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~ 296 (1188)
++..+..|.|.++...-.--++|.+++.+++++.-.++.-. +|+..|.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he---eEl~eLq 114 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE---EEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33444445555444322223455566666655555544332 4444443
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.06 E-value=13 Score=36.95 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=26.1
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 252 ALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
.+.+.+..++.++...+......+++++..+++++++..++..|..+++
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555566666666666665544433
No 119
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.91 E-value=31 Score=35.03 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=66.5
Q ss_pred hHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hh
Q 001018 861 ADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KV 936 (1188)
Q Consensus 861 ~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ 936 (1188)
...+.+.|.......+|.. +-+|...| ...+......+-.|..-+++.+|+|.+.+...|+.+++..|. ++
T Consensus 17 ~~~IekATs~~~~~~Dw~~--~leicD~I---~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 17 EQDVEKATNEYNTTEDWSL--IMDICDKV---GSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp HHHHHHHTCTTCSSCCHHH--HHHHHHHH---HHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCHHH--HHHHHHHH---hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566676665444456775 11122222 122344567777888888999999999999999999888665 56
Q ss_pred hhhhhhhHHHhhccC-CCcchHHHHHHHHHHHHHhh
Q 001018 937 TSMQVLPALVTLGSD-QNLNVKYASIDAFGAVAQHF 971 (1188)
Q Consensus 937 ls~~VlPaLv~LasD-~d~dVR~aaieAl~~LA~~l 971 (1188)
.+...+-.|+.|.+. .+..||--+++.|..-+..+
T Consensus 92 as~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 92 CSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp TSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 666777777766654 34445555544444444433
No 120
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.96 E-value=45 Score=34.10 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=77.5
Q ss_pred hhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----h
Q 001018 860 LADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----K 935 (1188)
Q Consensus 860 l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~ 935 (1188)
+...+.+.|.......+|.. +-+|... +...+......+-.|..-+++.+|+|.+-+...|+.+++..|. +
T Consensus 14 ~~~~IekATs~~l~~~Dw~~--ileicD~---I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEY--IIGFCDQ---INKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHH--HHHHHHH---HHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHH--HHHHHHH---HHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 44566677665444456765 1112222 2222344567788888889999999999999999999877554 6
Q ss_pred hhhhhhhhHHHhhccC------CCcchHHHHHHHHHHHHHhhch
Q 001018 936 VTSMQVLPALVTLGSD------QNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 936 ~ls~~VlPaLv~LasD------~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
+.+...+-.|+.+.+. .+..||--+++.|..-+..++.
T Consensus 89 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7788888888888763 3678888888888888877764
No 121
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=65.38 E-value=67 Score=31.41 Aligned_cols=50 Identities=32% Similarity=0.431 Sum_probs=40.6
Q ss_pred hhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhh
Q 001018 238 SLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELND 287 (1188)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (1188)
.++|-.++--.|+.-..+.+.++..+|++++.++..+-+.+--+++||.|
T Consensus 81 ~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEd 130 (167)
T 4gkw_A 81 QLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELEN 130 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777888889999999999999999998889998864
No 122
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=64.92 E-value=72 Score=31.92 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=76.8
Q ss_pred hhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----h
Q 001018 860 LADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----K 935 (1188)
Q Consensus 860 l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~ 935 (1188)
+...+.+.|...-...+|.. +-++... +......-...+..|-.-+++.+|+|=+-+...|+.+++..|. +
T Consensus 12 ~~~~IekATs~~l~~~dw~~--ileicD~---I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWAS--INGFCEQ---LNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHH--HHHHHHH---GGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHH--HHHHHHH---HHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44566666655444456765 2112222 2223345567788888888999999999999999999887664 5
Q ss_pred hhhhhhhhHHHhhccC------CCcchHHHHHHHHHHHHHhhch
Q 001018 936 VTSMQVLPALVTLGSD------QNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 936 ~ls~~VlPaLv~LasD------~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
+.+...+-.|+.+.++ ++..||--+++.|..-+..|..
T Consensus 87 ias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 7788888888888876 4677888887777777776654
No 123
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.69 E-value=93 Score=31.00 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=73.8
Q ss_pred HHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhh
Q 001018 863 YLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTS 938 (1188)
Q Consensus 863 yL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls 938 (1188)
.+.+.|...-...+|.. +-++...| ..........+-.+-.-+++.+|+|-+-+...|+.+++..|. ++.+
T Consensus 5 ~iekATs~~l~~~dw~~--~leicD~I---~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSA--IQNFCEQV---NTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHCTTCSSCCHHH--HHHHHHHH---HHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHcCCCCCCcCHHH--HHHHHHHH---HcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 44455544333345654 11122222 122344566777888888999999999999999999887664 6778
Q ss_pred hhhhhHHHhhccC------CCcchHHHHHHHHHHHHHhhch
Q 001018 939 MQVLPALVTLGSD------QNLNVKYASIDAFGAVAQHFKN 973 (1188)
Q Consensus 939 ~~VlPaLv~LasD------~d~dVR~aaieAl~~LA~~l~~ 973 (1188)
...+-.|+.+.++ .+..||--+++.|..-+..++.
T Consensus 80 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 80 FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8888899988875 3678888888888877777654
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=60.16 E-value=71 Score=41.64 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHH---hhcCchhHHHHHHHHHHHHHhhhCh
Q 001018 498 STRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQ---INHMYEERRLLVAQSCGELAEFVRP 574 (1188)
Q Consensus 498 ~~R~~Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~el---i~Dd~dEVRlLvAescg~La~~vg~ 574 (1188)
..-..+...|.+.+.+.+...+..++++|+.++- ...-..|.|++... ..+..-+||..++.++..++...
T Consensus 436 ~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-- 509 (1056)
T 1lsh_A 436 ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-- 509 (1056)
T ss_dssp GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--
Confidence 3356677788888888889999999999988754 22333444432210 11224468888888888887542
Q ss_pred hhhhhhhHHHHHHhh--cCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcc
Q 001018 575 EIRDSLILSIVQQLV--EDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWG 651 (1188)
Q Consensus 575 e~r~slLL~~LqqL~--eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~ 651 (1188)
...+.++|.++. ..+.++||-+|...|-. .-|+. ..+..+...+-.|++..|+....+++ -.+++-.
T Consensus 510 ---p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~---t~P~~---~~l~~ia~~l~~E~~~QV~sfv~S~l-~sla~s~ 578 (1056)
T 1lsh_A 510 ---PRKVQEIVLPIFLNVAIKSELRIRSCIVFFE---SKPSV---ALVSMVAVRLRREPNLQVASFVYSQM-RSLSRSS 578 (1056)
T ss_dssp ---HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH---TCCCH---HHHHHHHHHHTTCSCHHHHHHHHHHH-HHHTTCC
T ss_pred ---hHHHHHHHHHHhcCCCCChHHHHHHHHHHHH---HCcCH---HHHHHHHHHHhhCchHHHHHHHHHHH-HHHHhcC
Confidence 223344444444 56889999999876533 22333 24555566677889999999998888 6777654
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.15 E-value=18 Score=34.12 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=50.4
Q ss_pred HHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccccccccccccCCCcc------cCchhhhhHHHHHHHHHHHHHHhhhc
Q 001018 269 NLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVI------QSQPVERYEEEIKSLLKEIERLRAKS 342 (1188)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (1188)
.++..+++.++.+++|-+.++.++..|.++||+..+...+....+.-+ .+......++.+..|+.|++.++...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777888888888899999999999998555444433222211 11122245788899999999988654
No 126
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.84 E-value=23 Score=34.28 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=5.4
Q ss_pred ChHHHHHHHHhh
Q 001018 194 PDALRHYYYQYL 205 (1188)
Q Consensus 194 P~~L~~~yr~~~ 205 (1188)
|..+..+|..|.
T Consensus 11 ~~~~~~~ye~~I 22 (119)
T 3ol1_A 11 MSRLGDLYEEEM 22 (119)
T ss_dssp --CCTHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 444555666544
No 127
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.73 E-value=20 Score=43.00 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 266 DKENLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
+.|++.+..++.++..+++.++.+++++.+..++.+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333444444444444444455555555444443
No 128
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.40 E-value=21 Score=31.90 Aligned_cols=44 Identities=30% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHh
Q 001018 218 MLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALH 261 (1188)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 261 (1188)
|.+|-|.|.++|.+|-.-|..|...|+-.-..+..|+-.-+.++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~ 50 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQ 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566667777776666665555555544444444444433333
No 129
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.02 E-value=17 Score=32.36 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcccc
Q 001018 259 ALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSH 303 (1188)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~ 303 (1188)
.++..++.+..+++..+.-++.+.++|....++|..|+.++..++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444455555555555566666666555554
No 130
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=56.73 E-value=1.9e+02 Score=30.23 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=94.5
Q ss_pred hhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCC----ChhHH--HHHHHHHHHH--Hh
Q 001018 859 QLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSS----NIDMK--INAANLLKVI--VP 930 (1188)
Q Consensus 859 ~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~----~pnVR--~naak~L~~L--~~ 930 (1188)
|+.-|+.+++...-- .++ -.|+..|.. |.-...++|.|...+.+. ..|.. ....+....+ ++
T Consensus 8 Elq~yf~~It~a~~~--~~r-------~~aL~sL~~-D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 8 ELQLYFDKILSMIKS--DMK-------DIAIECLEK-ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp HHHHHHHHHHHHHTS--TTH-------HHHHHHHHH-CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHh--HHH-------HHHHHHHhc-CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 456688888764321 111 123333433 333344666665554432 12211 1122222222 33
Q ss_pred hhchhhhhhhhhhHHHhhc--cCCCc-chHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHhcCC--ChhHHHHHHHHH
Q 001018 931 YINAKVTSMQVLPALVTLG--SDQNL-NVKYASIDAFGAVAQHFKN--DMIVDKIRVQMDAFLEDG--SHEATVAVVRAL 1003 (1188)
Q Consensus 931 ~ig~~~ls~~VlPaLv~La--sD~d~-dVR~aaieAl~~LA~~l~~--e~~~ekl~~~~~slL~D~--~~~vR~~vv~al 1003 (1188)
.+..+---.+++|.+.+.. ..-.. .+|-++..-++.++..+|. ..+..+|..++...+-|+ ....+.=++.++
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL 157 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCL 157 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 3455555567788777632 22211 7999999999999999876 467788999988887776 567777788888
Q ss_pred HHhcccCCHHHHH-HHHHHHHHhhc
Q 001018 1004 AVAVPHTTERLRD-YLLSKIFQLSA 1027 (1188)
Q Consensus 1004 ~~l~p~~~~~~r~-~IlP~L~~L~~ 1027 (1188)
..+++ +.+. .|+|.+....+
T Consensus 158 ~~lG~----~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 158 SILSK----NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHCH----HHHHTHHHHHHHHHHH
T ss_pred HHhHH----HHHHHhhhcCHHHHHH
Confidence 88774 5566 89999988775
No 131
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.65 E-value=28 Score=29.22 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=31.5
Q ss_pred hhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 255 KSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
..++.+..............+.++......++.++.+|..++++|+-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33434333444455666666777777788888888888888887764
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.43 E-value=31 Score=33.74 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=50.1
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhh----hHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTK----SLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
+.+.+.+|..|.+++.+.+...+.++..+.. .+..++..|.++|...+.+++.++.+.++..++-.-..+|-++|.
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIa 122 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIA 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666655555555444332 234456667778888888888888888888777777676666555
Q ss_pred cc
Q 001018 301 GS 302 (1188)
Q Consensus 301 ~~ 302 (1188)
-|
T Consensus 123 tY 124 (131)
T 3tnu_A 123 TY 124 (131)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 133
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=54.09 E-value=76 Score=32.79 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 227 KVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
+....+..+.+.+....+-....+..+...+..+...+...+..+..++..++..+..++.++.++..+
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELA 74 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333334444444444444444444444444444444444444444444444333
No 134
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=51.09 E-value=1.2e+02 Score=37.45 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCc---hhhh--hHHHHHHHhccCCChhHHHHHHHhhHHHHHh
Q 001018 582 LSIVQQLVEDSATVVREAAARNLALLLPLFPNT---DKYF--KVEDLMFQLVCDPSGVVVETTFKELLPAVIN 649 (1188)
Q Consensus 582 L~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~---d~~~--qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~ 649 (1188)
++.|-.+.+...--||..+++.|..++..-+.. .+.. .-++.++.++.|....||..++..| +.+.+
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL-~~Lt~ 195 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL-QALTR 195 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH-HHHhc
Confidence 666777778899999999999999999776542 1221 3678889999999999999887666 66665
No 135
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.02 E-value=46 Score=32.39 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=49.1
Q ss_pred HHHHhhhhhhhhhhhhhhhhcchhhhhhhhh----hHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 225 LLKVNERLNHEKESLLKTKEISDGQISALTK----SLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
+.+.+.+|..|.+++.+.+...+.++..... .+..++..|..+|...+.+++.++.+.++..++-.-..+|-++|.
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIa 120 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIA 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666555555555443332 233456667777888888888888888888777666666665554
Q ss_pred cc
Q 001018 301 GS 302 (1188)
Q Consensus 301 ~~ 302 (1188)
-|
T Consensus 121 tY 122 (129)
T 3tnu_B 121 TY 122 (129)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 136
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.04 E-value=1.2e+02 Score=28.17 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=46.8
Q ss_pred HHHHHH-HHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHH
Q 001018 212 AEEKIA-MLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTA 290 (1188)
Q Consensus 212 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (1188)
...|+. +-.+.+...-..+.++.++.......+-.+..+.+|.+.+..+..++...+.+.......++.-.+...+.-+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334442 3334444444445555444444444444555666666666666666666666666666666666666655555
Q ss_pred HHhhh
Q 001018 291 EITAL 295 (1188)
Q Consensus 291 e~~~l 295 (1188)
++.+|
T Consensus 87 evasL 91 (101)
T 3u59_A 87 EVASL 91 (101)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 137
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=49.94 E-value=13 Score=32.70 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=29.7
Q ss_pred hhhhhhhhhhHHHHhhhhHHHHHHHHHHhhhccCc
Q 001018 78 EALVEKLAITEYELRLAQEDVTKLKAELKKKSDSS 112 (1188)
Q Consensus 78 ~~~~ekvavle~ELR~a~e~I~~Lr~~l~~~~~~~ 112 (1188)
...|+++.-||.+|+.+.+.|..||.+|-+....-
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35779999999999999999999999999986553
No 138
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.86 E-value=44 Score=39.79 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 001018 325 EEEIKSLLKEIERLRAKST 343 (1188)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~ 343 (1188)
.+.+..++++++.+.+++-
T Consensus 175 ~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 175 LKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhhccc
Confidence 4556667778887776654
No 139
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.50 E-value=1.3e+02 Score=28.08 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=42.0
Q ss_pred HHHHHHH-HHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhH
Q 001018 211 AAEEKIA-MLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCT 289 (1188)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (1188)
+...|+. +-.+.+...-..+.++.++.......+-.+..+.+|++.+..+..++...+.+....++.++.-.+...+.-
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344542 223333333344444444333333444455556666666655555555555555555555555555554444
Q ss_pred HHHhhh
Q 001018 290 AEITAL 295 (1188)
Q Consensus 290 ~e~~~l 295 (1188)
+++.+|
T Consensus 86 ~ev~~L 91 (101)
T 3u1c_A 86 SEVASL 91 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455554
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=49.25 E-value=75 Score=31.29 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=66.9
Q ss_pred HHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhh
Q 001018 863 YLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTS 938 (1188)
Q Consensus 863 yL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls 938 (1188)
.+.+.|........|.. +.++...| ...+......+..+-.-+++.+|+|-+.+...|+.+++..|. ++.+
T Consensus 9 ~iekAT~~~l~~~dw~~--ileicD~I---~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas 83 (140)
T 3ldz_A 9 DVEKATSEMNTAEDWGL--ILDICDKV---GQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS 83 (140)
T ss_dssp HHHHHTCTTSSSCCHHH--HHHHHHHH---TTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS
T ss_pred HHHHHcCCCCCCcCHHH--HHHHHHHH---HCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 44455544333345664 22222322 223445577888888889999999999999999999887665 4556
Q ss_pred hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhc
Q 001018 939 MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFK 972 (1188)
Q Consensus 939 ~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~ 972 (1188)
...+-.|+.+.+..+..||--+.+.+..-+..++
T Consensus 84 ~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 84 RDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 6677777666655556666666665555555443
No 141
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=48.90 E-value=32 Score=30.22 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=36.9
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 252 ALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
+++..+..++++|+.+|.++..++..+....|....++-|+-|+ .||+
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl--NIEN 62 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG--TIEN 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh--HHHH
Confidence 44556667888889999999999998887777777777788776 4554
No 142
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=48.46 E-value=1.4e+02 Score=31.25 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhhc----C--chhHHHHHHHHHHHHH--hhhChhhhhhhhHHHHHH--hhcC-CcHHHHHHHHHHHHhhc
Q 001018 540 MELLPQCWEQINH----M--YEERRLLVAQSCGELA--EFVRPEIRDSLILSIVQQ--LVED-SATVVREAAARNLALLL 608 (1188)
Q Consensus 540 ~ELLP~l~eli~D----d--~dEVRlLvAescg~La--~~vg~e~r~slLL~~Lqq--L~eD-~e~~VR~aAAksL~~l~ 608 (1188)
..|+|++-..+.+ . ..++...+..-+.+|. +.+.-+-+.+.++|++-. +++. ....+|+-||+-++.||
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 5678877554432 1 2233333344444444 556667888888998876 2222 12289999999999999
Q ss_pred ccCCCc--hhhhhHHHHHHHhccCCChh
Q 001018 609 PLFPNT--DKYFKVEDLMFQLVCDPSGV 634 (1188)
Q Consensus 609 ~~l~~~--d~~~qi~~~f~~Ll~D~s~~ 634 (1188)
..+++. .....+...+...+.|+...
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~ 146 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRS 146 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCC
Confidence 999873 34566888888888888543
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=47.12 E-value=93 Score=31.24 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=68.8
Q ss_pred hHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhhch----h
Q 001018 861 ADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVV-SSNIDMKINAANLLKVIVPYINA----K 935 (1188)
Q Consensus 861 ~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~-D~~pnVR~naak~L~~L~~~ig~----~ 935 (1188)
...+.+.|.......+|.. +-++...| ...+......+-.+-.-++ +.+|.|.+-+...|+.+++..|. +
T Consensus 18 ~~~IekATs~~l~~~Dw~~--~leicD~I---~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 18 GQRIEKATDGSLQSEDWAL--NMEICDII---NETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp HHHHHHHTCTTCSSCCHHH--HHHHHHHH---HHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCCCcCHHH--HHHHHHHH---hCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3456666655444456775 11122222 1223445667777888787 58999999999999999887665 4
Q ss_pred hhhhhhhhH-HHhhcc---CCCcchHHHHHHHHHHHHHhhc
Q 001018 936 VTSMQVLPA-LVTLGS---DQNLNVKYASIDAFGAVAQHFK 972 (1188)
Q Consensus 936 ~ls~~VlPa-Lv~Las---D~d~dVR~aaieAl~~LA~~l~ 972 (1188)
+.+...+-. |+.+.. +++..||--+++.|..-+..++
T Consensus 93 va~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 93 VASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 666667776 666653 4455677777777766666554
No 144
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.46 E-value=29 Score=31.05 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=43.1
Q ss_pred HHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhh
Q 001018 217 AMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKT 277 (1188)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1188)
.+..||.-|+.-..+||--|+.|.+--|-...+..+|...+++++......+..+.+++++
T Consensus 13 nLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 13 NLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888888888888888888888888888776555555555555544
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.35 E-value=83 Score=33.47 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----h
Q 001018 860 LADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----K 935 (1188)
Q Consensus 860 l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~ 935 (1188)
+...+.+.|.......+|.. +-+|.+.| ...+......+..|..-+++.+|+|-+-++.+|+.+++.-|. +
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~--ileicD~I---~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWES--ILQICDLI---RQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHH--HHHHHHHH---HTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHH--HHHHHHHH---hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 34456666655444456765 22222322 222334567788888888999999999999999999888665 4
Q ss_pred hhhhhhhhHHHhh
Q 001018 936 VTSMQVLPALVTL 948 (1188)
Q Consensus 936 ~ls~~VlPaLv~L 948 (1188)
+.+...+-.|+.|
T Consensus 84 ias~~fl~~l~~l 96 (226)
T 3zyq_A 84 VANKQTMEELKDL 96 (226)
T ss_dssp HSSHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 5555555555544
No 146
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=43.74 E-value=3.4e+02 Score=33.50 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhh-----hhHHHHHHhhcCCcHHHHHHHHHHHHhhcccCCCch
Q 001018 541 ELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDS-----LILSIVQQLVEDSATVVREAAARNLALLLPLFPNTD 615 (1188)
Q Consensus 541 ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~s-----lLL~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d 615 (1188)
+-++.+-++++.+.-.||+.+++.+..|...=+...... .=+|.|-.+..|....||..++--|..++..=.+--
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 456777777777778899999999988875432211111 235677788899999999999888888876433211
Q ss_pred ---hhhhHHHHHHHhccCCCh
Q 001018 616 ---KYFKVEDLMFQLVCDPSG 633 (1188)
Q Consensus 616 ---~~~qi~~~f~~Ll~D~s~ 633 (1188)
.+.-.++.++.++.....
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHhccHHHHHHHHHhcCC
Confidence 233456666777765543
No 147
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=43.60 E-value=34 Score=36.11 Aligned_cols=129 Identities=7% Similarity=-0.038 Sum_probs=69.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhc-CchhHHHHHHHHH-HHHHhhhChhhhhhhhH
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINH-MYEERRLLVAQSC-GELAEFVRPEIRDSLIL 582 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~D-d~dEVRlLvAesc-g~La~~vg~e~r~slLL 582 (1188)
.++..|...+--+.|..++.-+....+.+.+ +-++.++..+.+ +.| .+++.+ ..+.+++. .+...+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nW----d~~D~~a~~~~~~~~--~~~~~~~ 126 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWW----DSVDAWRKFFGSWVA--LHLTELP 126 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSH----HHHHHHHHHHHHHHH--HSGGGHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcH----HHHHHHHHHHHHHHH--HChHHHH
Confidence 5666677777777787777666544333322 344545554432 233 334432 22334432 1233345
Q ss_pred HHHHHhhcC-CcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhc
Q 001018 583 SIVQQLVED-SATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINW 650 (1188)
Q Consensus 583 ~~LqqL~eD-~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~ 650 (1188)
+.+...+.+ ..|+.|.+++-.| ..... .....++++...++.|++-.|+.+..=.| --+.+-
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l----~~~~~-~~~~~~~~i~~~~~~d~~~yV~kavgW~L-r~~~k~ 189 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQL----MLKEK-TNQDLLKKAIIYDRTTEEFFIQKAIGWSL-RQYSKT 189 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTT----TCGGG-CCHHHHHHHHHHTTTCCCHHHHHHHHHHH-HHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH----HHHHC-CCHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHhh
Confidence 666675554 4555555544332 22222 22356678888899999998887665555 555554
No 148
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.56 E-value=91 Score=31.44 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=31.4
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhh
Q 001018 254 TKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKM 297 (1188)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~ 297 (1188)
.+.++.+++++..++..+.+++..++...+.+..++.|+.+|..
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLql 110 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTI 110 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667777777777777777777778888887744
No 149
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.76 E-value=94 Score=45.23 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=43.1
Q ss_pred hhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhHHHHHH
Q 001018 251 SALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKS 330 (1188)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1188)
..+.+.++..++.+.+++.++.+++++++..+.++++..+|...|+.+++... ..++....-|+.
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~---------------~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK---------------NKVDRSIALLDN 2081 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHh
Confidence 33444445555566666666666666666666666666666666665555321 133445555666
Q ss_pred HHHHHHHHhh
Q 001018 331 LLKEIERLRA 340 (1188)
Q Consensus 331 l~~~~~~~~~ 340 (1188)
|..|..+|+.
T Consensus 2082 L~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2082 LNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred hhhccccHHH
Confidence 6666665543
No 150
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.26 E-value=53 Score=43.00 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 266 DKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
..++.+..++++++.+++++.....|...++..++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555566666666555555555544433
No 151
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.60 E-value=1.3e+02 Score=34.61 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 278 TEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 278 ~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
|..++.-|.+.+.+|..|...|+-
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777777767754
No 152
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.49 E-value=62 Score=32.10 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=19.7
Q ss_pred HHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhh
Q 001018 258 EALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKM 297 (1188)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~ 297 (1188)
+.+..+++++++.+..+|..+...+..+.....++..++.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544444444444444444443
No 153
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.32 E-value=1.1e+02 Score=27.68 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccc
Q 001018 257 LEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGS 302 (1188)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~ 302 (1188)
+...+..|-.+|...+.+++.++.+.++..++-.-+.+|-++|.-|
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455667777888888888888888888887777777765555433
No 154
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=38.92 E-value=21 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001018 502 SLTHTLFNLIKRPDEKQRRIIMDACV 527 (1188)
Q Consensus 502 ~Ll~ll~nLiKdddp~vRr~aa~~l~ 527 (1188)
.|.++|.++..+-||.+||++++.+.
T Consensus 7 ~l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 7 GLMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp SHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 155
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.28 E-value=69 Score=30.86 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=23.8
Q ss_pred hhhhhhhhhHHHHhhh----hhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhh
Q 001018 248 GQISALTKSLEALHRD----LKDKENLILDLKKTTEHQRRELNDCTAEITALK 296 (1188)
Q Consensus 248 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~ 296 (1188)
..+.+|..+|+..+.. +++++..+..+.|.|+...-++..+|.++..+.
T Consensus 53 qTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 53 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3455555555443333 445555555555555444444444444444443
No 156
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.31 E-value=77 Score=28.16 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhh
Q 001018 261 HRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMH 298 (1188)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ 298 (1188)
-.+|..++..+.++++.|+....++..++.++..+++.
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556666777777777777777777777777666553
No 157
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.64 E-value=3e+02 Score=29.60 Aligned_cols=6 Identities=17% Similarity=-0.103 Sum_probs=2.2
Q ss_pred HHHhhh
Q 001018 290 AEITAL 295 (1188)
Q Consensus 290 ~e~~~l 295 (1188)
.||..+
T Consensus 97 kEie~~ 102 (256)
T 3na7_A 97 IEEDIA 102 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 158
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.58 E-value=1.1e+02 Score=29.80 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=38.0
Q ss_pred hhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 222 NESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
.+.|.+++++|-.+++.+. ...+.-+.++..++..|+..++++++.....+.|..-|++..+
T Consensus 17 Ie~Lkreie~lk~ele~l~-----------------~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK-----------------TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655555332 2335556677788888888888888776655555555554444
No 159
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.78 E-value=1.7e+02 Score=34.79 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001018 325 EEEIKSLLKEIERL 338 (1188)
Q Consensus 325 ~~~~~~l~~~~~~~ 338 (1188)
+++...+..++..+
T Consensus 564 ~~e~~~~~~~~~~l 577 (597)
T 3oja_B 564 RQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444433
No 160
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.49 E-value=2.6e+02 Score=33.10 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=17.4
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHh
Q 001018 252 ALTKSLEALHRDLKDKENLILDLKKTTEHQRREL 285 (1188)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (1188)
.+..+++..++++++.++.+++....+|.+.+.+
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444
No 161
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.24 E-value=45 Score=29.23 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred hhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhh
Q 001018 254 TKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALK 296 (1188)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~ 296 (1188)
...++.+++.++.++..+.+++..++....++..+|.++..+.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888889999999999888888777777777776653
No 162
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=31.85 E-value=11 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=30.3
Q ss_pred CChhhhhHhHHHHHHHHHHcCCcccceeccccc
Q 001018 146 LKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEV 178 (1188)
Q Consensus 146 ikp~E~r~LN~lv~eYLl~~~Ykltsitf~dE~ 178 (1188)
+..+|=|-+|-||.|||--.||+-|.--|.-|.
T Consensus 13 ~~s~~GrLi~~LVrEyLef~~l~~TlsVf~pEs 45 (82)
T 2d68_A 13 LNTKDGRLVASLVAEFLQFFNLDFTLAVFQPET 45 (82)
T ss_dssp HTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCcccHHHHHHHHHHHHHcCCcchHHhhhhcc
Confidence 445788999999999999999999999999998
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.55 E-value=2e+02 Score=30.16 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch----hhhhhhhhhHHHhhc
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA----KVTSMQVLPALVTLG 949 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~----~~ls~~VlPaLv~La 949 (1188)
.....+-.|..-+++.+|+|-+-+...|+.+++.-|. ++.+...+-.|+.+.
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~ 94 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL 94 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHh
Confidence 4456666777788899999999999999999877654 445555555554443
No 164
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.43 E-value=1.3e+02 Score=39.51 Aligned_cols=6 Identities=33% Similarity=0.235 Sum_probs=2.3
Q ss_pred HHHhhh
Q 001018 290 AEITAL 295 (1188)
Q Consensus 290 ~e~~~l 295 (1188)
.|+..|
T Consensus 1030 ~e~~~L 1035 (1080)
T 2dfs_A 1030 EQNTLL 1035 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 165
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.98 E-value=85 Score=28.54 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=35.0
Q ss_pred hhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccc
Q 001018 255 KSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGS 302 (1188)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~ 302 (1188)
..++.++..|..+|.+.+.+++.++.+.++..++-.-+.+|-++|.-|
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344556777777888888888888888888887777777776555433
No 166
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.83 E-value=34 Score=45.11 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.7
Q ss_pred HHHHHHc
Q 001018 159 KEYLLLA 165 (1188)
Q Consensus 159 ~eYLl~~ 165 (1188)
.-||...
T Consensus 803 Rg~l~R~ 809 (1184)
T 1i84_S 803 RGYLARK 809 (1184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 167
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.25 E-value=1e+02 Score=27.46 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.9
Q ss_pred hhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhcc
Q 001018 255 KSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEG 301 (1188)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~ 301 (1188)
...+..+..|-.+|.+.+.+++.++.+.++..++-.-+..|.++|.-
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777888888888888888887776666666555543
No 168
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.54 E-value=2.5e+02 Score=25.51 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 001018 326 EEIKSLLKEIERLR 339 (1188)
Q Consensus 326 ~~~~~l~~~~~~~~ 339 (1188)
.++.+|..|+.-+|
T Consensus 70 ~kvesL~eEl~fLk 83 (86)
T 3swk_A 70 RKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34444445554444
No 169
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.42 E-value=2e+02 Score=27.23 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=31.4
Q ss_pred hhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhc
Q 001018 231 RLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300 (1188)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie 300 (1188)
-|..||-++.=.-|+....+..+...+..++++.+++-+....+| +....+..++..++..|+
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K-------r~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREK-------HAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555566666666665555444444 444444444444444333
No 170
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.13 E-value=3.4e+02 Score=24.58 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=4.4
Q ss_pred hHHHHhhhhhh
Q 001018 288 CTAEITALKMH 298 (1188)
Q Consensus 288 ~~~e~~~l~~~ 298 (1188)
+.+++.+|+.+
T Consensus 68 LE~kvesL~eE 78 (86)
T 3swk_A 68 LERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 171
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.81 E-value=3e+02 Score=24.42 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=22.9
Q ss_pred hhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHHHhh
Q 001018 231 RLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELN 286 (1188)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (1188)
.|..+++...-.-+.+..++....+.......++..+.+.++.++..++.....+.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443333333333333333333333334444444445555554444444443
No 172
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.80 E-value=1.4e+02 Score=27.09 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=20.8
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHhhhh
Q 001018 259 ALHRDLKDKENLILDLKKTTEHQRRELNDC 288 (1188)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (1188)
+.++.|++.+.+.+++...++..++++.++
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788877777777766666543
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=24.78 E-value=1.8e+02 Score=30.45 Aligned_cols=61 Identities=10% Similarity=-0.065 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 001018 505 HTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELA 569 (1188)
Q Consensus 505 ~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La 569 (1188)
..+...+++++.-+||.++.++.... .....+.+++.|..+++|+++=||-.++=.+-.++
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~~----~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLMLK----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 34445555566666665555442111 11122344444444555555555555554444443
No 174
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.43 E-value=2e+02 Score=26.03 Aligned_cols=25 Identities=12% Similarity=0.091 Sum_probs=12.7
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 271 ILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
+..+-+.+....-+|+++|..+.+|
T Consensus 50 lk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 50 VGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3333344444455566666665554
No 175
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.24 E-value=1e+02 Score=28.68 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=33.2
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhhhhhhccc
Q 001018 256 SLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGS 302 (1188)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~ie~~ 302 (1188)
.++..+..|..+|...+.+++.++.+.++..++-.-...|.+.|.-|
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888888888888888877666666665555443
No 176
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.78 E-value=88 Score=41.29 Aligned_cols=8 Identities=13% Similarity=-0.101 Sum_probs=3.5
Q ss_pred HHHHhhhc
Q 001018 42 IRLKEFFS 49 (1188)
Q Consensus 42 ~~Lr~fFs 49 (1188)
.+|...|.
T Consensus 556 ~kl~~~~~ 563 (1184)
T 1i84_S 556 EKLIQEQG 563 (1184)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhC
Confidence 34444443
No 177
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.21 E-value=1.2e+02 Score=35.38 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=5.6
Q ss_pred hhhhhhhhHHH
Q 001018 249 QISALTKSLEA 259 (1188)
Q Consensus 249 ~~~~l~~~~~~ 259 (1188)
.+.+|..+|++
T Consensus 426 ~~~~~~~~~~~ 436 (471)
T 3mq9_A 426 TVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34555555544
No 178
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.60 E-value=2.3e+02 Score=28.11 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=51.4
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchh---hhhhhhhhHHHhhc-----------cCCCcchHHHHHH
Q 001018 897 EHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAK---VTSMQVLPALVTLG-----------SDQNLNVKYASID 962 (1188)
Q Consensus 897 ~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~---~ls~~VlPaLv~La-----------sD~d~dVR~aaie 962 (1188)
.....|++.||.-+.+..|+|.+-+.+.|+-++..-... ++..++ ..|.+|. .|+...||-.+.+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~-~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS-VAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT-HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH-HHHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 445789999999999999999999999999988654443 333332 3344444 3445789999988
Q ss_pred HHHHHH
Q 001018 963 AFGAVA 968 (1188)
Q Consensus 963 Al~~LA 968 (1188)
.+..|-
T Consensus 124 l~~ll~ 129 (140)
T 1vdy_A 124 TISAIF 129 (140)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887653
No 179
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.83 E-value=3.3e+02 Score=24.20 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=26.7
Q ss_pred hhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHH
Q 001018 230 ERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRR 283 (1188)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (1188)
+.++.+.....+..+-++..+.+|.+.+..+..++...+.........|+.-++
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444455556666666666655555555555444444444333
No 180
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.68 E-value=3.2e+02 Score=30.40 Aligned_cols=88 Identities=5% Similarity=0.073 Sum_probs=46.7
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhch---hhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch-
Q 001018 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINA---KVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN- 973 (1188)
Q Consensus 898 ~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~---~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~- 973 (1188)
+.+.+.|-+.+|+.|++.|- + ++++.++... ..+-..+.+.+.+|+.|+.- ...+..+.+....
T Consensus 56 i~~ei~~~~~~L~~d~~gn~---v---vQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G------~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 56 VFNEILQAAYQLMTDVFGNY---V---IQKFFEFGSLDQKLALATRIRGHVLPLALQMYG------CRVIQKALESISSD 123 (351)
T ss_dssp HHHHHGGGHHHHHTSTTHHH---H---HHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTH------HHHHHHHHHHSCHH
T ss_pred HHHHHHHhHHHHHhChhhhH---H---HHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHh------HHHHHHHHHhCCHH
Confidence 34555566667777766553 1 2222222222 23445677778888888652 2222222222222
Q ss_pred --HHHHHHHHHHHHHHhcCCChhHHH
Q 001018 974 --DMIVDKIRVQMDAFLEDGSHEATV 997 (1188)
Q Consensus 974 --e~~~ekl~~~~~slL~D~~~~vR~ 997 (1188)
..+.+.+.+.+..+..|+.-++-+
T Consensus 124 ~~~~i~~el~~~~~~L~~d~~Gn~Vi 149 (351)
T 3gvo_A 124 QQSEMVKELDGHVLKCVKDQNGNHVV 149 (351)
T ss_dssp HHHHHHGGGTTCHHHHHHSTTHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhHHH
Confidence 234566777777788888666533
No 181
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.58 E-value=2.4e+02 Score=27.07 Aligned_cols=38 Identities=26% Similarity=0.202 Sum_probs=16.5
Q ss_pred hhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHh
Q 001018 239 LLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKK 276 (1188)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 276 (1188)
+...++--..|+..|+....+-...|++....+...+.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555554444444344433333333333
No 182
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.12 E-value=6.8e+02 Score=29.97 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=5.4
Q ss_pred hHHHHHHHHHhhH
Q 001018 266 DKENLILDLKKTT 278 (1188)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (1188)
+++++++.||..+
T Consensus 114 ELRRrIqyLKekV 126 (562)
T 3ghg_A 114 DLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 183
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.89 E-value=4.2e+02 Score=30.72 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhhHHHHhhh
Q 001018 264 LKDKENLILDLKKTTEHQRRELNDCTAEITAL 295 (1188)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l 295 (1188)
++..|+...+++...+..+++....++++..+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 33333333333333333333333333344333
No 184
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.82 E-value=4.3e+02 Score=27.92 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcch
Q 001018 196 ALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISD 247 (1188)
Q Consensus 196 ~L~~~yr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 247 (1188)
++..||-..+.......++...+-.+|+.+.++.++|.++.+.+.+.|+-.+
T Consensus 122 ~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 122 VIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777666554444444455566777777777777777776666665433
No 185
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=20.72 E-value=3.2e+02 Score=30.06 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=25.0
Q ss_pred hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhch----HHHHHHHHHHHHHHhcCCChhH
Q 001018 939 MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKN----DMIVDKIRVQMDAFLEDGSHEA 995 (1188)
Q Consensus 939 ~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~----e~~~ekl~~~~~slL~D~~~~v 995 (1188)
..+.|.+..|+.|+.-- ..+..+.+.++. ..+.+.+.+.+..+..|+.-++
T Consensus 81 ~~~~~~~~~l~~~~~G~------rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~ 135 (333)
T 3bwt_A 81 KISSPHFVEISLNPHGT------RALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNH 135 (333)
T ss_dssp HHHGGGHHHHHHSTTHH------HHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHH
T ss_pred HHHHhHHHHHHhccccc------HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 44556666666665422 222222222221 1344556666666777765443
No 186
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=20.64 E-value=6.2e+02 Score=24.94 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=61.0
Q ss_pred hhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHHHH
Q 001018 939 MQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYL 1018 (1188)
Q Consensus 939 ~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~~I 1018 (1188)
..++|-|.+..+|.||-|-..+++.+... + +.+...|... +...+..=.. .-+..+++.++......+
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~-~~l~p~I~~v----l~s~D~~W~y---wil~~lv~~~~~~~~~~l 97 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH----Q-SIAMPHILTI----LQGNDIMWKY---WVIKLMIPYLIYPNKQLV 97 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHT----H-HHHHHHHHHH----HHSSCHHHHH---HHHHHHGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHc----c-HhhHHHHHHH----HHcCChHHHH---HHHHHHHHcCCHHHHHHH
Confidence 35788999999999999988887766542 2 2443444443 3333322222 335567888888877799
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHHHH
Q 001018 1019 LSKIFQLSAVPSSSSDVMRRRERANAFCE 1047 (1188)
Q Consensus 1019 lP~L~~L~~vpN~~~~~~~R~~vAk~l~~ 1047 (1188)
.|-|..++..|-.......=-++|+-+++
T Consensus 98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~ 126 (134)
T 3ut4_A 98 KSELERLSSLEIINEDIREIVNLSKDYLH 126 (134)
T ss_dssp HHHHHHHHTCCCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 99999999977543222222245554444
No 187
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.05 E-value=1.4e+02 Score=27.14 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=14.3
Q ss_pred HHHhhhhhHHHHhhhhhhhhh
Q 001018 217 AMLRENESLLKVNERLNHEKE 237 (1188)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~ 237 (1188)
.-+.||+.|++.++.++.|+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~ 55 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIA 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778877777777766544
Done!