Query 001019
Match_columns 1188
No_of_seqs 326 out of 1177
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 13:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 4.8E-51 1E-55 494.1 25.5 294 12-379 79-397 (894)
2 PRK06464 phosphoenolpyruvate s 100.0 2.1E-37 4.6E-42 384.0 23.1 206 969-1178 3-246 (795)
3 PRK06241 phosphoenolpyruvate s 100.0 1.2E-36 2.6E-41 381.9 22.5 197 970-1173 2-230 (871)
4 TIGR01418 PEP_synth phosphoeno 100.0 1.5E-36 3.3E-41 376.5 21.7 202 972-1177 1-242 (782)
5 PF01326 PPDK_N: Pyruvate phos 100.0 1.8E-37 4E-42 351.2 1.9 188 982-1176 4-222 (327)
6 COG0574 PpsA Phosphoenolpyruva 100.0 5.9E-30 1.3E-34 316.8 17.6 200 971-1177 3-240 (740)
7 PRK05878 pyruvate phosphate di 100.0 3.8E-30 8.2E-35 306.1 14.5 204 968-1176 4-255 (530)
8 TIGR01828 pyru_phos_dikin pyru 99.9 4.1E-26 8.9E-31 284.5 16.4 197 971-1173 2-292 (856)
9 PLN02784 alpha-amylase 99.9 2.3E-25 5.1E-30 271.6 13.9 129 247-376 69-210 (894)
10 PRK09279 pyruvate phosphate di 99.9 1.2E-22 2.6E-27 253.0 16.5 196 970-1171 3-296 (879)
11 PRK05849 hypothetical protein; 99.7 6.7E-17 1.5E-21 200.2 11.4 144 982-1175 6-166 (783)
12 PLN02316 synthase/transferase 97.4 0.0085 1.8E-07 78.1 21.0 90 23-126 143-239 (1036)
13 PRK05849 hypothetical protein; 96.7 0.017 3.8E-07 73.7 14.0 175 757-938 572-781 (783)
14 PRK08296 hypothetical protein; 95.8 0.013 2.9E-07 72.8 6.5 96 837-939 504-601 (603)
15 PF00391 PEP-utilizers: PEP-ut 95.8 0.0076 1.7E-07 56.0 3.3 68 862-933 9-78 (80)
16 PRK06241 phosphoenolpyruvate s 95.5 0.022 4.8E-07 74.0 7.1 93 838-939 773-868 (871)
17 PLN02316 synthase/transferase 95.3 0.8 1.7E-05 60.5 20.0 88 31-126 326-420 (1036)
18 PF03423 CBM_25: Carbohydrate 94.9 0.14 2.9E-06 48.7 8.7 65 288-373 20-86 (87)
19 PRK06354 pyruvate kinase; Prov 93.7 0.07 1.5E-06 66.5 5.1 95 836-937 486-582 (590)
20 PRK05878 pyruvate phosphate di 93.5 0.13 2.8E-06 63.5 6.7 98 835-939 353-453 (530)
21 TIGR01418 PEP_synth phosphoeno 93.5 0.095 2E-06 67.5 5.8 99 836-941 358-461 (782)
22 PRK05865 hypothetical protein; 93.5 0.16 3.4E-06 65.9 7.7 97 837-941 740-838 (854)
23 PRK06464 phosphoenolpyruvate s 92.8 0.13 2.9E-06 66.3 5.7 99 836-941 360-463 (795)
24 PRK09279 pyruvate phosphate di 92.7 0.11 2.5E-06 67.2 4.7 103 837-942 399-512 (879)
25 PRK11377 dihydroxyacetone kina 92.4 0.2 4.2E-06 61.2 6.0 68 862-939 395-471 (473)
26 PF03423 CBM_25: Carbohydrate 91.8 0.46 9.9E-06 45.1 6.5 67 46-124 18-86 (87)
27 TIGR01828 pyru_phos_dikin pyru 91.4 0.22 4.7E-06 64.8 5.2 103 837-942 393-506 (856)
28 PRK11177 phosphoenolpyruvate-p 88.5 0.51 1.1E-05 59.0 4.9 78 862-943 153-233 (575)
29 COG3848 Phosphohistidine swive 87.7 1.5 3.2E-05 43.2 6.4 97 836-939 6-104 (111)
30 TIGR01417 PTS_I_fam phosphoeno 87.4 0.8 1.7E-05 57.2 5.7 77 862-942 152-231 (565)
31 PRK11061 fused phosphoenolpyru 86.2 0.96 2.1E-05 58.3 5.6 76 862-943 320-399 (748)
32 COG1080 PtsA Phosphoenolpyruva 86.0 1.1 2.4E-05 55.4 5.7 72 862-943 154-234 (574)
33 PRK03955 hypothetical protein; 80.7 6.5 0.00014 40.5 7.9 96 836-939 6-128 (131)
34 PF11154 DUF2934: Protein of u 80.3 1.8 4E-05 35.7 3.1 35 138-175 5-39 (40)
35 COG0574 PpsA Phosphoenolpyruva 65.9 2.7 5.9E-05 54.3 1.2 113 796-917 305-419 (740)
36 COG3605 PtsP Signal transducti 63.3 4.8 0.0001 50.0 2.5 53 858-911 323-378 (756)
37 PF04190 DUF410: Protein of un 34.7 1.3E+02 0.0028 34.3 7.9 87 466-556 53-158 (260)
38 KOG2122 Beta-catenin-binding p 30.9 6.5E+02 0.014 35.8 13.9 109 709-825 406-522 (2195)
39 COG5424 Pyrroloquinoline quino 30.9 58 0.0013 36.8 4.2 24 554-578 92-116 (242)
40 KOG3021 Predicted kinase [Gene 28.8 44 0.00096 37.7 2.8 43 461-505 95-137 (313)
41 PF12752 SUZ: SUZ domain; Int 21.7 86 0.0019 27.9 2.8 24 151-174 32-55 (59)
42 PF14475 Mso1_Sec1_bdg: Sec1-b 20.6 83 0.0018 26.5 2.3 20 533-552 14-33 (41)
43 KOG2435 Uncharacterized conser 20.3 3.9E+02 0.0085 30.9 8.1 89 264-374 202-295 (323)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.8e-51 Score=494.13 Aligned_cols=294 Identities=25% Similarity=0.474 Sum_probs=245.5
Q ss_pred ceeeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCccccc
Q 001019 12 VHNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQT 77 (1188)
Q Consensus 12 ~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~n~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~A~~T 77 (1188)
...|.|.... ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++||||
T Consensus 79 kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT 156 (894)
T PLN02784 79 KETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIET 156 (894)
T ss_pred eeeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEec
Confidence 3467765554 2334443 67788999999866 7788999999999885 89999999 45 8999999
Q ss_pred ccccc--cc-cEEEEEEec-CCcceeEEEEEEeccccccccccCCcccccCCCCCCCCCCCCCchhhhhhhHhhhhccCC
Q 001019 78 PFVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRG 153 (1188)
Q Consensus 78 pf~~~--g~-~~~v~ie~~-d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~~~~~~~~~~~p~~li~~~ay~~We~~g 153 (1188)
||+++ |+ .+.|+|||+ ++++.||+||||+|++|+|||++|+||+|+|++......+. +..-+.+-.|++
T Consensus 157 ~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~-----~~~~~~~~~~~~-- 229 (894)
T PLN02784 157 PLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNN-----VGAKKGFGIWPG-- 229 (894)
T ss_pred cccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccce-----eehhhhcCcCcC--
Confidence 99996 44 788889998 99999999999999999999999999999999977666652 444788999999
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHhhcCCChHHHHhhhcCCCCCCCCCChhhhccCCCC--CCCccCCHHHHHhhhcc--C
Q 001019 154 RPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPS--YPCRRHDVEKWLQKNYK--G 229 (1188)
Q Consensus 154 kp~~~~e~~~~e~~~A~~~l~~el~~g~sl~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~d~~~~~~k~~~--~ 229 (1188)
.|.++...+.++++. .+++|..+..+. .+.++. |++||+ |
T Consensus 230 ----------------------------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 273 (894)
T PLN02784 230 ----------------------------ALGQLSNILLKDEGS---PSKEQDKSSSELDSAAERKG-----LKGFYEEMP 273 (894)
T ss_pred ----------------------------ccccccchhccCCCC---CcccCCCccccccccccccc-----chhhhhccc
Confidence 888888888887752 233343222222 233333 788999 8
Q ss_pred ccccCCCCchhHHHHHHhhcCCCcceeeeeeecceEEEEEEEee--CcceEEEEEecCCCCeEEEeeeecCCCCcccCCC
Q 001019 230 HVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPP 307 (1188)
Q Consensus 230 ~~~~~~~p~~~~~~~~~~~~~~~~v~~~k~f~~~~el~V~v~~~--~gk~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP 307 (1188)
+.|+ +.++ +.+.|+|+++ ++|++|+|+||+|++|||||||||++++||++||
T Consensus 274 ~~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp 327 (894)
T PLN02784 274 IVKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPP 327 (894)
T ss_pred eeeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCC
Confidence 8777 4455 8899999984 7899999999999999999999999899999999
Q ss_pred CCCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 001019 308 PDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (1188)
Q Consensus 308 ~~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~d~~~gi~FVLk~-~~~W~kn~G~DF~Vpl~~~~~~ 379 (1188)
++++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 328 ~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 328 EPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 9999999999999999999999998888988777 7899999999999 7999999999999999987544
No 2
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=2.1e-37 Score=384.05 Aligned_cols=206 Identities=22% Similarity=0.336 Sum_probs=184.8
Q ss_pred cCcceeeCCCCC---CccccHHhHHHHHhhhcCC-CCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCChH
Q 001019 969 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 1044 (1188)
Q Consensus 969 ~~~~vl~l~e~~---~~~VGgKAanL~~L~~~~p-~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~~ 1044 (1188)
+++++++|+++. ...|||||+||++|++.++ .|+|||+|||||+++|++||+.+ ++.+.|..+...++..+..
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 456899999875 3689999999999998555 69999999999999999999998 6777777766666666766
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHH--------------HhcC-------CCCCCCC-------CHHHHHHHHHH
Q 001019 1045 KL----QEIQEAVLQMSAPLSLIYELKNKM--------------RSSG-------MPWPGDE-------GWNLAWRSIKK 1092 (1188)
Q Consensus 1045 ~L----~~IR~~I~~~~lP~el~~eL~~Av--------------RSSa-------~SfAG~~-------g~e~l~~AIk~ 1092 (1188)
++ ++||++|++.++|+++.++|..++ |||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 54 899999999999999999988764 5675 3899998 37999999999
Q ss_pred HHHhcCChHHHHHHHHcCCCCccccceeEEEEeeccc--eeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCeeE
Q 001019 1093 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 1170 (1188)
Q Consensus 1093 VWASlfs~RA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd~f 1170 (1188)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+|+++.++|++++||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999 99999
Q ss_pred EEecCCCC
Q 001019 1171 VTKKNNLK 1178 (1188)
Q Consensus 1171 ~v~k~~g~ 1178 (1188)
+++|.++.
T Consensus 239 ~v~~~~~~ 246 (795)
T PRK06464 239 YVHKPTLK 246 (795)
T ss_pred EEeccccc
Confidence 99997643
No 3
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.2e-36 Score=381.88 Aligned_cols=197 Identities=22% Similarity=0.420 Sum_probs=173.8
Q ss_pred CcceeeCCCCC---CccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCChHHH
Q 001019 970 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL 1046 (1188)
Q Consensus 970 ~~~vl~l~e~~---~~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~~~L 1046 (1188)
.+++++|.++. ...|||||+||++|.+ .|+|||+|||||+++|++|++.+ ++.+.|......++..+...+
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 46788888764 3689999999999999 89999999999999999999987 333333322233444454433
Q ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHH-----------HhcC-------CCCCCCC-------CHHHHHHHHHHHHHhc
Q 001019 1047 ----QEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 1097 (1188)
Q Consensus 1047 ----~~IR~~I~~~~lP~el~~eL~~Av-----------RSSa-------~SfAG~~-------g~e~l~~AIk~VWASl 1097 (1188)
++||++|++.++|+++.++|..++ |||+ .|||||| +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999864 7886 3899998 4799999999999999
Q ss_pred CChHHHHHHHHcCCCCccccceeEEEEeeccceeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCeeEEEe
Q 001019 1098 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 1173 (1188)
Q Consensus 1098 fs~RA~~YRr~~Gi~~~~v~MAVLVQeMV~ad~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd~f~v~ 1173 (1188)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++++.++|++++||||+||+|.+ +||+|+++
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~ 230 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVR 230 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999998
No 4
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=1.5e-36 Score=376.53 Aligned_cols=202 Identities=26% Similarity=0.398 Sum_probs=179.1
Q ss_pred ceeeCCCCC---CccccHHhHHHHHhhhcCC-CCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCChHHH-
Q 001019 972 YAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1046 (1188)
Q Consensus 972 ~vl~l~e~~---~~~VGgKAanL~~L~~~~p-~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~~~L- 1046 (1188)
+++||+++. ...|||||+||++|++.++ .|+|||+|||||+++|++||+.+ ++.+.|..+...++..+.+.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467888765 3689999999999997322 69999999999999999999998 666777666555666666544
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHH----------------HhcC-------CCCCCCC-------CHHHHHHHHHHH
Q 001019 1047 ---QEIQEAVLQMSAPLSLIYELKNKM----------------RSSG-------MPWPGDE-------GWNLAWRSIKKV 1093 (1188)
Q Consensus 1047 ---~~IR~~I~~~~lP~el~~eL~~Av----------------RSSa-------~SfAG~~-------g~e~l~~AIk~V 1093 (1188)
++||++|++.++|+++.++|..++ |||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 799999999999999999987653 5775 3899998 379999999999
Q ss_pred HHhcCChHHHHHHHHcCCCCccccceeEEEEeeccc--eeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCeeEE
Q 001019 1094 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 1171 (1188)
Q Consensus 1094 WASlfs~RA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd~f~ 1171 (1188)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|++++||||+||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999 999999
Q ss_pred EecCCC
Q 001019 1172 TKKNNL 1177 (1188)
Q Consensus 1172 v~k~~g 1177 (1188)
++|.++
T Consensus 237 v~r~~~ 242 (782)
T TIGR01418 237 VFKPTL 242 (782)
T ss_pred Eecccc
Confidence 999764
No 5
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=1.8e-37 Score=351.18 Aligned_cols=188 Identities=31% Similarity=0.495 Sum_probs=146.3
Q ss_pred ccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCCh----HHHHHHHHHHHcCC
Q 001019 982 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL----SKLQEIQEAVLQMS 1057 (1188)
Q Consensus 982 ~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~----~~L~~IR~~I~~~~ 1057 (1188)
..|||||+||++|++ .|++||+|||||+++|++||+.+ ++.+.+..+...+...+. +..++||++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 458999999999998 89999999999999999999987 688888776553322222 23489999999999
Q ss_pred CCHHHHHHHHHHH------------HhcCC-------CCCCCC-------CHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Q 001019 1058 APLSLIYELKNKM------------RSSGM-------PWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 1111 (1188)
Q Consensus 1058 lP~el~~eL~~Av------------RSSa~-------SfAG~~-------g~e~l~~AIk~VWASlfs~RA~~YRr~~Gi 1111 (1188)
+|+++.++|..++ |||+. ||||+| +.++|++|||+||||+|++||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 9999999999874 66652 789998 369999999999999999999999999999
Q ss_pred CCccccceeEEEEeeccceeEEEEecCCCCCCCCe-EEEEEeccCCcccccCccCCCeeEEEecCC
Q 001019 1112 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNN 1176 (1188)
Q Consensus 1112 ~~~~v~MAVLVQeMV~ad~SGVlfT~nP~tgd~~e-i~Ieav~GLGE~LVsG~vGtpd~f~v~k~~ 1176 (1188)
+++++.|||+||+||++++|||+||+||.+|+++. ++|++++||||+||+|.+ +|++|++++.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~ 222 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSD 222 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EH
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCC
Confidence 99999999999999999999999999999999998 999999999999999999 99999998754
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.9e-30 Score=316.83 Aligned_cols=200 Identities=25% Similarity=0.410 Sum_probs=175.7
Q ss_pred cceeeCCCC---CCccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCChHHH-
Q 001019 971 KYAVSVEDF---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1046 (1188)
Q Consensus 971 ~~vl~l~e~---~~~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~~~L- 1046 (1188)
.++.++.+. +..++|||++||++|.+ .|+|||+|||||+.+|+.|++.+ ++.+.+......++..+..++
T Consensus 3 ~~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~ 76 (740)
T COG0574 3 NLILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELE 76 (740)
T ss_pred ccccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHH
Confidence 355666664 34799999999999999 89999999999999999999998 666666655444444443344
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHH---------------HhcC-------CCCCCCC-------CHHHHHHHHHHHH
Q 001019 1047 ---QEIQEAVLQMSAPLSLIYELKNKM---------------RSSG-------MPWPGDE-------GWNLAWRSIKKVW 1094 (1188)
Q Consensus 1047 ---~~IR~~I~~~~lP~el~~eL~~Av---------------RSSa-------~SfAG~~-------g~e~l~~AIk~VW 1094 (1188)
..+|..|...++|.++.+++..++ |||+ .|||||+ +.++++.+|++||
T Consensus 77 ~~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~ 156 (740)
T COG0574 77 FRSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCW 156 (740)
T ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHH
Confidence 789999999999999999999876 4454 2799976 4899999999999
Q ss_pred HhcCChHHHHHHHHcCCCCccccceeEEEEeeccc--eeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCeeEEE
Q 001019 1095 ASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVT 1172 (1188)
Q Consensus 1095 ASlfs~RA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd~f~v 1172 (1188)
||+||+||+.||.++|+++..+.|||+||+||.++ .|||+||+||.||....+.+++++||||.+|+|.+ +||.|.+
T Consensus 157 aSl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~ 235 (740)
T COG0574 157 ASLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYV 235 (740)
T ss_pred HhhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEE
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999 9999999
Q ss_pred ecCCC
Q 001019 1173 KKNNL 1177 (1188)
Q Consensus 1173 ~k~~g 1177 (1188)
.|.+.
T Consensus 236 ~k~~~ 240 (740)
T COG0574 236 SKDTL 240 (740)
T ss_pred eccch
Confidence 99753
No 7
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=99.96 E-value=3.8e-30 Score=306.12 Aligned_cols=204 Identities=17% Similarity=0.227 Sum_probs=165.7
Q ss_pred ccCcceeeCCCCCC---ccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhcc--chhHHHHHHHHHhhcC---
Q 001019 968 FRGKYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN--- 1039 (1188)
Q Consensus 968 ~~~~~vl~l~e~~~---~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~--~~~L~~~I~~L~~~l~--- 1039 (1188)
+..++|++|++... +++|||++||++|++ .|+|||+|||||+.+|++|++.+. .+.|+++|......++
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999998754 589999999999999 899999999999999999999873 2446655543322111
Q ss_pred ---CC---ChH----------HHHHHHHHHHcCCCCHHHHHHHHHHHHhc------CCCCCCCCC-------------HH
Q 001019 1040 ---GG---DLS----------KLQEIQEAVLQMSAPLSLIYELKNKMRSS------GMPWPGDEG-------------WN 1084 (1188)
Q Consensus 1040 ---~~---d~~----------~L~~IR~~I~~~~lP~el~~eL~~AvRSS------a~SfAG~~g-------------~e 1084 (1188)
.+ ++. ...-+++.|+++.+|+++.++|.+..-.| -.+|+|+|+ ++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 11 211 11349999999999999999998742111 136788872 48
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCCCccccceeEEEEeeccc-----eeEEEEecCCCCCCCCeEEEEEeccCCccc
Q 001019 1085 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 1159 (1188)
Q Consensus 1085 ~l~~AIk~VWASlfs~RA~~YRr~~Gi~~~~v~MAVLVQeMV~ad-----~SGVlfT~nP~tgd~~ei~Ieav~GLGE~L 1159 (1188)
+|.+|||.||||+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|++..+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999998755 8999999999664 589999999999998888888899999999
Q ss_pred ccCccCCCeeEEEecCC
Q 001019 1160 VGAYPGRAMSFVTKKNN 1176 (1188)
Q Consensus 1160 VsG~vGtpd~f~v~k~~ 1176 (1188)
|+|.+ +|+.|.+.+..
T Consensus 240 VsG~~-~p~~~~~~~~~ 255 (530)
T PRK05878 240 VSGLV-DVAPITALRDE 255 (530)
T ss_pred hcCCc-CCcchhhhccc
Confidence 99999 99999987753
No 8
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=99.93 E-value=4.1e-26 Score=284.55 Aligned_cols=197 Identities=18% Similarity=0.240 Sum_probs=157.7
Q ss_pred cceeeCCCCCC---ccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhcc--chhHHHHHHH----HHhhcC--
Q 001019 971 KYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISR----LYKFIN-- 1039 (1188)
Q Consensus 971 ~~vl~l~e~~~---~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~--~~~L~~~I~~----L~~~l~-- 1039 (1188)
+++++|++.+. .++|||++||++|++ .|+|||+|||||+.+|+.|++.+. ..+|++.|.. +....+
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 47889998754 589999999999999 799999999999999999999874 2346555543 332221
Q ss_pred ---CCChHH----------HHHHHHHHHcCCCCHHHHHHHHH-------HH-----------------Hhc---------
Q 001019 1040 ---GGDLSK----------LQEIQEAVLQMSAPLSLIYELKN-------KM-----------------RSS--------- 1073 (1188)
Q Consensus 1040 ---~~d~~~----------L~~IR~~I~~~~lP~el~~eL~~-------Av-----------------RSS--------- 1073 (1188)
..++.- ...++++|+++.+|++++++|.. ++ ||+
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 122211 13799999999999999999986 22 222
Q ss_pred ----C------CC----------CCCCC-----------CHHHHHHHHHHHHHhcCChHHHHHHHHcCCCCccccceeEE
Q 001019 1074 ----G------MP----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 1122 (1188)
Q Consensus 1074 ----a------~S----------fAG~~-----------g~e~l~~AIk~VWASlfs~RA~~YRr~~Gi~~~~v~MAVLV 1122 (1188)
+ .| |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 1 13 66665 278999999999999999999999999999987 8999999
Q ss_pred EEeeccc-----eeEEEEecCCCCCCCCeEEEEEe-ccCCcccccCccCCCeeEEEe
Q 001019 1123 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTK 1173 (1188)
Q Consensus 1123 QeMV~ad-----~SGVlfT~nP~tgd~~ei~Ieav-~GLGE~LVsG~vGtpd~f~v~ 1173 (1188)
|+||.++ .|||+||+||.+|.+. +++++. .|+||.||+|.+ +|+.|...
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~ 292 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAM 292 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHh
Confidence 9999654 7999999999999753 666664 589999999999 99998753
No 9
>PLN02784 alpha-amylase
Probab=99.92 E-value=2.3e-25 Score=271.63 Aligned_cols=129 Identities=25% Similarity=0.490 Sum_probs=117.3
Q ss_pred hhcCCCcceeeeeeecc-eE-----EEEEE-EeeCcceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCcccc
Q 001019 247 NSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSKM 317 (1188)
Q Consensus 247 ~~~~~~~v~~~k~f~~~-~e-----l~V~v-~~~~gk~~V~v~td~~~~lvLHWGv~~~~--~~eW~~PP~~~~P~~S~~ 317 (1188)
++.+.++|+++|+|+++ .| |.|++ ++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+.
T Consensus 69 ~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~ 148 (894)
T PLN02784 69 ETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIA 148 (894)
T ss_pred eccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEE
Confidence 45568999999999999 66 44444 77899999999999999999999999987 699999999999999999
Q ss_pred c-cceeeeeeecccCCCceeeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 001019 318 V-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (1188)
Q Consensus 318 ~-~~A~eT~f~~~~~~~~~~~~-lei~l~~d~~~gi~FVLk~--~~~W~kn~G~DF~Vpl~~~ 376 (1188)
+ ++||||||++.+.++..+++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 149 ~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 149 IKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred ecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 8 89999999999888888886 899885 899999999999 6999999999999999975
No 10
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.88 E-value=1.2e-22 Score=253.05 Aligned_cols=196 Identities=22% Similarity=0.335 Sum_probs=149.1
Q ss_pred CcceeeCCC----C---CCccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhcc--chhHHHH----HHHHHh
Q 001019 970 GKYAVSVED----F---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANK----ISRLYK 1036 (1188)
Q Consensus 970 ~~~vl~l~e----~---~~~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~--~~~L~~~----I~~L~~ 1036 (1188)
.++|++|++ . ..+++|||++||++|.+ .|+|||+||+||+++|++|++.+. .+++++. |..|..
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 367888843 2 23699999999999999 899999999999999999998763 2344443 444444
Q ss_pred hcCC--CChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HH----hcC-----C-------
Q 001019 1037 FING--GDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MR----SSG-----M------- 1075 (1188)
Q Consensus 1037 ~l~~--~d~~-------------~L~~IR~~I~~~~lP~el~~eL~~A----------vR----SSa-----~------- 1075 (1188)
..+. ++.. ...-+.+.|+++.+..+.+..|... +| +.| .
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 3321 2211 1246778888888888888777753 11 111 0
Q ss_pred ---------------CC-------------------CCC-C---CHHHHHHHHHHHHHhcCChHHHHHHHHcCCCCcccc
Q 001019 1076 ---------------PW-------------------PGD-E---GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLC 1117 (1188)
Q Consensus 1076 ---------------Sf-------------------AG~-~---g~e~l~~AIk~VWASlfs~RA~~YRr~~Gi~~~~v~ 1117 (1188)
.| .|. + .+++|..||+.||+|+||+||+.||+.+|++++ ..
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~g 238 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFPQDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-WG 238 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-cC
Confidence 00 121 1 288999999999999999999999999999986 89
Q ss_pred ceeEEEEeeccc-----eeEEEEecCCCCCCCCeEEEEE-eccCCcccccCccCCCeeEE
Q 001019 1118 MAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEI-VKGLGETLVGAYPGRAMSFV 1171 (1188)
Q Consensus 1118 MAVLVQeMV~ad-----~SGVlfT~nP~tgd~~ei~Iea-v~GLGE~LVsG~vGtpd~f~ 1171 (1188)
|||+||+||.++ .|||+||+||.||++ .+++++ +.|+||.||+|.+ +|+.|.
T Consensus 239 ~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~-~~~Ge~l~~aqGedVVsG~~-tp~~~~ 296 (879)
T PRK09279 239 TAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEK-KLYGEFLINAQGEDVVAGIR-TPQPIP 296 (879)
T ss_pred ceEEEEeccccCCCCCcceEEEEeCCCCCCCC-ceeEEEecCCCChhhhcCcc-CcchhH
Confidence 999999999765 699999999999985 556665 5799999999999 999984
No 11
>PRK05849 hypothetical protein; Provisional
Probab=99.68 E-value=6.7e-17 Score=200.19 Aligned_cols=144 Identities=18% Similarity=0.099 Sum_probs=109.5
Q ss_pred ccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCCHH
Q 001019 982 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLS 1061 (1188)
Q Consensus 982 ~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~~~L~~IR~~I~~~~lP~e 1061 (1188)
-.+|+||++|+.|++++ .+++||+++++|...|.+-.+ .+ + +.|+..+ +
T Consensus 6 ~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~~~~-----~~---~---------------~~i~~~~-----~-- 54 (783)
T PRK05849 6 LFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLSNKD-----KV---L---------------EEIQNSF-----P-- 54 (783)
T ss_pred cccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhccCHH-----HH---H---------------HHHHHhc-----C--
Confidence 47899999999999854 689999999999885533111 11 1 2222211 0
Q ss_pred HHHHHHHHHHhcC-------CCCCCCCC---------HHHHHHHHHHHHHhcCChHHHHHHHHcCCCCccccceeEEEEe
Q 001019 1062 LIYELKNKMRSSG-------MPWPGDEG---------WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQET 1125 (1188)
Q Consensus 1062 l~~eL~~AvRSSa-------~SfAG~~g---------~e~l~~AIk~VWASlfs~RA~~YRr~~Gi~~~~v~MAVLVQeM 1125 (1188)
.-.-++|||+ .||||||. .+++..||++||||+++ + ..|||+||+|
T Consensus 55 ---~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~----~~~aVlVQ~M 116 (783)
T PRK05849 55 ---ADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------S----KDDEILVQPM 116 (783)
T ss_pred ---CCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------C----CCCeEEEEeC
Confidence 0124679996 38999981 56999999999999766 2 2489999999
Q ss_pred ec-cceeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCeeEEEecC
Q 001019 1126 IC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKN 1175 (1188)
Q Consensus 1126 V~-ad~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd~f~v~k~ 1175 (1188)
|. +..|||+||+||.+|.+..+....++|+||.||+|.+ +|+.+.+.+.
T Consensus 117 V~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~ 166 (783)
T PRK05849 117 LEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYR 166 (783)
T ss_pred ccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeecc
Confidence 98 6999999999999997655544445899999999999 9899988764
No 12
>PLN02316 synthase/transferase
Probab=97.39 E-value=0.0085 Score=78.15 Aligned_cols=90 Identities=13% Similarity=0.303 Sum_probs=57.2
Q ss_pred EEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---cccEEEEEEecCC
Q 001019 23 LQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIELRDP 95 (1188)
Q Consensus 23 ~~~~~~~~~~g~~~~v~~~~~n~----~~~l~lHWGv~~~~~~~W~~P~~~Pk~~A~~Tpf~~~---g~~~~v~ie~~d~ 95 (1188)
+-|.=.-...|+.++|-+-..+. ..++++|=|+ ..|...+ .-++++|+ ||.-..++.+++.
T Consensus 143 ~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~Vp~~ 210 (1036)
T PLN02316 143 LFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHIPKE 210 (1036)
T ss_pred EEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEecCcc
Confidence 33333334556666666554442 3456666433 4565532 22333343 7777777777666
Q ss_pred cceeEEEEEEeccccccccccCCcccccCCC
Q 001019 96 KIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (1188)
Q Consensus 96 ~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~ 126 (1188)
+.. |+|||.|+ .+.|=+|+|.||+++.+.
T Consensus 211 A~~-ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 211 AYK-MDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred ceE-EEEEEeCC-ccccccCCCCceEEEeCC
Confidence 554 99999998 678999999999999863
No 13
>PRK05849 hypothetical protein; Provisional
Probab=96.67 E-value=0.017 Score=73.67 Aligned_cols=175 Identities=13% Similarity=0.068 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHH----HhhCchHHHhhhhcCccchhhccccHHHHhhhhhHH----HHHHHHhhHHHH
Q 001019 757 LQAKAILDRLQLVLA--ERSQTYQ----KKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPVL 826 (1188)
Q Consensus 757 L~lkA~LdR~rr~~e--~~~d~~~----~~~qp~a~~LG~~lgie~~~v~~FtEe~IRas~~f~----lS~ll~~L~p~l 826 (1188)
..++..++++|.+++ +++-... ...-.....+|..||+++.-+--++-+.|++...-. ....+..+-...
T Consensus 572 ~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~r 651 (783)
T PRK05849 572 IDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKRN 651 (783)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHHH
Confidence 556888888888877 3332222 222233345788888877766666666666422110 012222221111
Q ss_pred HHH----hc--CC-----------------CcEEeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCC--CC
Q 001019 827 RKV----AN--LG-----------------CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VG 881 (1188)
Q Consensus 827 r~~----a~--l~-----------------~wqvispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP--~g 881 (1188)
++. .. .. .=..++||.+.|.++++..-.. ....-.|||+..+|=.=... .+
T Consensus 652 k~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~~----~~~~G~Ilv~~~tdPg~~~lf~~~ 727 (783)
T PRK05849 652 KQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDND----DDLEGKIVCIENADPGYDWLFTKG 727 (783)
T ss_pred HHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChhh----cCCCCCEEEeCCCCccchHHHhhh
Confidence 111 00 00 0023799999999999876421 11234699999763211111 26
Q ss_pred cEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEEcCCceE
Q 001019 882 VVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1188)
Q Consensus 882 VaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~vss~~v~ 938 (1188)
++||||..-+ ..||.+++||..|||-+.--.....+.+ .+|+.|.+....+.|.
T Consensus 728 i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 728 IAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRIE 781 (783)
T ss_pred eeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEEE
Confidence 9999998765 8999999999999999865432113322 2588888877665554
No 14
>PRK08296 hypothetical protein; Provisional
Probab=95.84 E-value=0.013 Score=72.76 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=70.1
Q ss_pred EeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeech
Q 001019 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1188)
Q Consensus 837 vispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~ 914 (1188)
.++||.+.|.+++|.+..+.. ....+.|||+...+-. .+|. .+.||||..-. .+||.++.||+.|||-+.+-..
T Consensus 504 ~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP~-~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~~ 579 (603)
T PRK08296 504 AASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSPS-WAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTGN 579 (603)
T ss_pred ecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCHH-HHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCcc
Confidence 369999999999998866543 2345689999865422 2442 69999998765 8999999999999998866542
Q ss_pred HHHHHHHhcCCCeEEEEEcCCceEE
Q 001019 915 NILRNLRLKEGKAVSIRLKSTNLII 939 (1188)
Q Consensus 915 ~~~~~l~~l~Gk~V~l~vss~~v~l 939 (1188)
... +-.+|..|.+..+.+.|.+
T Consensus 580 -at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 580 -ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred -Hhh--hcCCCCEEEEECCCCEEEE
Confidence 222 1247999999887766654
No 15
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.80 E-value=0.0076 Score=55.96 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCCeEEEEeCCCCcccC-C-CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEEc
Q 001019 862 RRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 933 (1188)
Q Consensus 862 ~~P~Ill~~~~~GeEEI-P-~gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~vs 933 (1188)
.+++||+++..+-.+-. . ..++||||..-. ++||.++.||.+|||.+..-.. ....+ .+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~~i--~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATEAI--KDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHHHS--CTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhhcc--CCCCEEEEECC
Confidence 45789999976555533 1 379999998765 8999999999999999987763 33322 35888877543
No 16
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.53 E-value=0.022 Score=74.01 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=69.7
Q ss_pred eeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeechH
Q 001019 838 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 915 (1188)
Q Consensus 838 ispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~ 915 (1188)
+++|.+.|.++++.+..+. ......|||+...++. ..|. .+.||||..-+ .+||.+|.||..|||-++.-..
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~- 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDPG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVEN- 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCHH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEcccc-
Confidence 6899999999998875553 2345679999987763 3443 69999887665 9999999999999998865432
Q ss_pred HHHHHHhc-CCCeEEEEEcCCceEE
Q 001019 916 ILRNLRLK-EGKAVSIRLKSTNLII 939 (1188)
Q Consensus 916 ~~~~l~~l-~Gk~V~l~vss~~v~l 939 (1188)
. .+.+ +|..|.+....+.|.+
T Consensus 847 ~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H---HhhcCCCCEEEEECCCCEEEE
Confidence 2 2333 7999999877665544
No 17
>PLN02316 synthase/transferase
Probab=95.31 E-value=0.8 Score=60.54 Aligned_cols=88 Identities=14% Similarity=0.342 Sum_probs=55.9
Q ss_pred CCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCcccccccccccccEEEEEEecCCcceeEEEEEEe
Q 001019 31 SIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKD 106 (1188)
Q Consensus 31 ~~g~~~~v~~~~~n----~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~A~~Tpf~~~g~~~~v~ie~~d~~i~ai~Fvl~d 106 (1188)
..|.+++|-.--.| .+.++.+|||.. .|.-..+.+ ..-+.++ .+.|+.-..+|.++.. .+-+.||+.|
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~~-A~~mDfVFsd 397 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPER-ALVLDWVFAD 397 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCCC-ceEEEEEEec
Confidence 34555554443333 377899999995 454433311 0112222 1137767776666644 5779999999
Q ss_pred c---cccccccccCCcccccCCC
Q 001019 107 G---IHDRWLRLNHGNFRIEIPE 126 (1188)
Q Consensus 107 e---~~~~W~k~~g~nf~v~l~~ 126 (1188)
+ ..+.|=+++|.|||++.+.
T Consensus 398 g~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 398 GPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred CCcccccccccCCCcceeeecCC
Confidence 7 3568999999999999874
No 18
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.94 E-value=0.14 Score=48.70 Aligned_cols=65 Identities=26% Similarity=0.551 Sum_probs=37.4
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001019 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1188)
Q Consensus 288 ~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~-~~~~~~~lei~l~~d~~~gi~FVLk~~-~~W~kn~ 365 (1188)
.+.||+|.. .|..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n-----~W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFN-----RWTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCC-----CCCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 478999975 4987764 22222110 00113445677766655 799999996 8999999
Q ss_pred CcceEEec
Q 001019 366 GENFFVGL 373 (1188)
Q Consensus 366 G~DF~Vpl 373 (1188)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 19
>PRK06354 pyruvate kinase; Provisional
Probab=93.74 E-value=0.07 Score=66.47 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=69.8
Q ss_pred EEeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001019 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1188)
Q Consensus 836 qvispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d 913 (1188)
+..+||.+.|.++++....+. .....+.|||++..+- +.+|. .+.||||..-. ..||.++.||.+|||-+.+-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 346889999999998875552 2445678999987554 44553 69999998665 899999999999999997655
Q ss_pred hHHHHHHHhcCCCeEEEEEcCCce
Q 001019 914 QNILRNLRLKEGKAVSIRLKSTNL 937 (1188)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l~vss~~v 937 (1188)
. ... .-.+|..|.+....+.|
T Consensus 562 ~-~~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 562 N-ATS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred c-hhh--ccCCCCEEEEECCCCEE
Confidence 3 222 12368988887765444
No 20
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=93.52 E-value=0.13 Score=63.51 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=65.7
Q ss_pred cEEeeceeEEEEEEE-ecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEe
Q 001019 835 WQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (1188)
Q Consensus 835 wqvispG~A~G~L~~-V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc 911 (1188)
=..++||.+.|+++. .++..+.. ....+.|||+...+-+ +++. .+.||||..-. ..||.++.||++|||-+..
T Consensus 353 G~~as~G~a~G~V~~~~~~~~~~~--~~~~g~ILV~~~t~P~-~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~VvG 428 (530)
T PRK05878 353 GLPACPGVVSGTAYTDVDEALDAA--DRGEPVILVRDHTRPD-DVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAVVG 428 (530)
T ss_pred CeeccCceEEEEEEECHHHHHHHh--hccCCEEEEECCCCHH-HHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEEEc
Confidence 345799999999864 22222211 2234578888854322 2442 59999998766 8999999999999999976
Q ss_pred echHHHHHHHhcCCCeEEEEEcCCceEE
Q 001019 912 FDQNILRNLRLKEGKAVSIRLKSTNLII 939 (1188)
Q Consensus 912 ~d~~~~~~l~~l~Gk~V~l~vss~~v~l 939 (1188)
-.. ....+ ..|..|.+......|.-
T Consensus 429 ~~~-~~~~~--~~G~~VtvDg~~G~V~~ 453 (530)
T PRK05878 429 CGA-GVAAA--LAGKEITVDGYEGEVRQ 453 (530)
T ss_pred ccc-hhhcc--CCCCEEEEECCCCEEEe
Confidence 542 22323 36999998877655544
No 21
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.50 E-value=0.095 Score=67.52 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=71.1
Q ss_pred EEeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001019 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1188)
Q Consensus 836 qvispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d 913 (1188)
..++||.+.|.++++....+.. ....+.|||+...+-+ ++|. .+.||||..-. ..||.++.||+.|||-+..-.
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p~-~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~~ 433 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDPD-WEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGTG 433 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCHH-HHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEccc
Confidence 4579999999999998876643 3445679999864332 2442 79999998765 899999999999999876543
Q ss_pred hHHHHHHHhcCCCeEEEEEcC---CceEEee
Q 001019 914 QNILRNLRLKEGKAVSIRLKS---TNLIISD 941 (1188)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l~vss---~~v~l~~ 941 (1188)
+....+ .+|..|.+.... +.|....
T Consensus 434 -~~~~~l--~~G~~v~vDg~~~~~G~v~~~~ 461 (782)
T TIGR01418 434 -DATKTL--KDGMEVTVDCAEGDTGYVYAGK 461 (782)
T ss_pred -chhhcc--cCCCEEEEEcCCCCCcEEEeCC
Confidence 232222 369999998876 4454443
No 22
>PRK05865 hypothetical protein; Provisional
Probab=93.46 E-value=0.16 Score=65.88 Aligned_cols=97 Identities=18% Similarity=0.068 Sum_probs=69.2
Q ss_pred EeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeech
Q 001019 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1188)
Q Consensus 837 vispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP--~gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~ 914 (1188)
.++||.+.|.+++|.. .+ ......+.|||+...+-.. +| ..+.||||..-. .+||.++.||..|||-+.+-..
T Consensus 740 ~~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp~~-~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~ 814 (854)
T PRK05865 740 GVCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDVGY-TAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG 814 (854)
T ss_pred eccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCHHH-HHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc
Confidence 3699999999999972 22 1233556899998643221 33 269999998665 8999999999999999987652
Q ss_pred HHHHHHHhcCCCeEEEEEcCCceEEee
Q 001019 915 NILRNLRLKEGKAVSIRLKSTNLIISD 941 (1188)
Q Consensus 915 ~~~~~l~~l~Gk~V~l~vss~~v~l~~ 941 (1188)
.... -.+|+.|.+..+.+.|.+-+
T Consensus 815 -at~~--l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 815 -ATRF--LPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred -Hhhc--CCCCCEEEEECCCcEEEEec
Confidence 2221 13899999998877766543
No 23
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=92.85 E-value=0.13 Score=66.32 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=67.7
Q ss_pred EEeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001019 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1188)
Q Consensus 836 qvispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP--~gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d 913 (1188)
..++||.++|.++++.+..+.. ....+.|||+...+= ++++ ..+.||||..-. ..||.++.||++|||-+.--.
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg~~ 435 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGTG 435 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEccC
Confidence 3468999999999998866654 234567999885422 2333 269999998765 889999999999999764322
Q ss_pred hHHHHHHHhcCCCeEEE---EEcCCceEEee
Q 001019 914 QNILRNLRLKEGKAVSI---RLKSTNLIISD 941 (1188)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l---~vss~~v~l~~ 941 (1188)
+....+ .+|..|.+ ....+.|...+
T Consensus 436 -~~~~~l--~~G~~v~v~~~Dg~~G~v~~~~ 463 (795)
T PRK06464 436 -NATEVL--KDGQEVTVSCAEGDTGYVYEGL 463 (795)
T ss_pred -ccccee--cCCCEEEEEeccCCCcEEEeCC
Confidence 122222 36999988 55554454443
No 24
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=92.66 E-value=0.11 Score=67.25 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=67.1
Q ss_pred EeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeech
Q 001019 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1188)
Q Consensus 837 vispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~ 914 (1188)
..|||.|+|++++..+-..-. ....++.|||.... .-++++. .+.||||..-. ..||.+|.||++|||-++.-..
T Consensus 399 ~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~et-~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~~ 475 (879)
T PRK09279 399 PASPGAATGKIVFTADEAEAL-AARGEKVILVRPET-SPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAGA 475 (879)
T ss_pred ccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECCC-CHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccCc
Confidence 469999999997753322111 12244678887743 3333442 58899998766 8999999999999999865432
Q ss_pred HHHH---------HHHhcCCCeEEEEEcCCceEEeec
Q 001019 915 NILR---------NLRLKEGKAVSIRLKSTNLIISDI 942 (1188)
Q Consensus 915 ~~~~---------~l~~l~Gk~V~l~vss~~v~l~~~ 942 (1188)
..++ .-.-.+|..|.+..+.+.|...+.
T Consensus 476 ~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~~ 512 (879)
T PRK09279 476 LRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGEV 512 (879)
T ss_pred ceEecccCEEEECCEEecCCCEEEEECCCCEEEECCc
Confidence 1111 011236888888887766666543
No 25
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.35 E-value=0.2 Score=61.17 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCCeEEEEeCCCCcccCCC---------CcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEE
Q 001019 862 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (1188)
Q Consensus 862 ~~P~Ill~~~~~GeEEIP~---------gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~v 932 (1188)
.+|.|||++ |+.| +|.||+|..-. ..||.+++||.+|||-+.--.. .+.. -.+|..|-+..
T Consensus 395 ~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~~-~~~~--~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQGE-KLYA--IQPEETLTLDV 464 (473)
T ss_pred CCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcchh-hHhh--ccCCCEEEEEC
Confidence 458899987 4553 59999998765 8899999999999997654332 2222 23688888877
Q ss_pred cCCceEE
Q 001019 933 KSTNLII 939 (1188)
Q Consensus 933 ss~~v~l 939 (1188)
..+.+.+
T Consensus 465 ~~G~v~v 471 (473)
T PRK11377 465 KTQRLNR 471 (473)
T ss_pred CCCEEEe
Confidence 6655544
No 26
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=91.81 E-value=0.46 Score=45.15 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=40.2
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCcccccccccccccEEEEEEecCCcceeEEEEEEeccccccccccCCccccc
Q 001019 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (1188)
Q Consensus 46 ~~~l~lHWGv~~~~~~~W~~P~~-~P-k~~A~~Tpf~~~g~~~~v~ie~~d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~ 123 (1188)
+..+.||+|. +.|..++. .| +..+ + ..++....+|+++..+ ..|+|||+|. .+.|=.++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~a-~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPEDA-YVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TTT-SEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCCc-eEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57977765 22 1111 1 1156677778776544 4799999998 899999999999987
Q ss_pred C
Q 001019 124 I 124 (1188)
Q Consensus 124 l 124 (1188)
+
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 27
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=91.39 E-value=0.22 Score=64.75 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=67.6
Q ss_pred EeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeech
Q 001019 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1188)
Q Consensus 837 vispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~ 914 (1188)
..+||.+.|++++...-.... ....++.|||....+- ++++. .+.||||..-. ..||.++.||++|||-++.-..
T Consensus 393 ~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~P-~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~~ 469 (856)
T TIGR01828 393 PASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETSP-EDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCEE 469 (856)
T ss_pred ccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCCH-HHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEcccc
Confidence 469999999998763322111 1234567888875422 23442 58999998776 8999999999999999865432
Q ss_pred HHHHH---------HHhcCCCeEEEEEcCCceEEeec
Q 001019 915 NILRN---------LRLKEGKAVSIRLKSTNLIISDI 942 (1188)
Q Consensus 915 ~~~~~---------l~~l~Gk~V~l~vss~~v~l~~~ 942 (1188)
..++. -.-.+|..|.+..+.+.|...+.
T Consensus 470 ~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~~ 506 (856)
T TIGR01828 470 LKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGEI 506 (856)
T ss_pred cccccccceeeeCCeEecCCCEEEEECCCCEEEECCC
Confidence 22111 12236888888877766665543
No 28
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=88.45 E-value=0.51 Score=58.95 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=54.6
Q ss_pred CCCeEEEEeCCCCcc--cCC-CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEEcCCceE
Q 001019 862 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1188)
Q Consensus 862 ~~P~Ill~~~~~GeE--EIP-~gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~vss~~v~ 938 (1188)
..|.|||++..+-.+ .++ ..+.||||..-. ..||.+++||++|||-+..-.. ....+ .+|+.|.+....+.|.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~~-~~~~~--~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTGN-ITKQV--KNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcChh-HHhhc--cCCCEEEEECCCCEEE
Confidence 457788887543222 111 269999998765 8899999999999997755542 32222 3699999988887777
Q ss_pred EeecC
Q 001019 939 ISDIS 943 (1188)
Q Consensus 939 l~~~~ 943 (1188)
+.+.+
T Consensus 229 ~~P~~ 233 (575)
T PRK11177 229 VNPTN 233 (575)
T ss_pred ECCCH
Confidence 76643
No 29
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=87.72 E-value=1.5 Score=43.25 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=69.0
Q ss_pred EEeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCcccCCC--CcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001019 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1188)
Q Consensus 836 qvispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~GeEEIP~--gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d 913 (1188)
|.|-.|.+.|+.++-+.-.+... .+..-.||++.+.|+| -+|. -..||||.+.. .-||-+|-+++.|||.+.-.+
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~d-~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~~ 82 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDAD-FVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGVK 82 (111)
T ss_pred eeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCChh-hHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEec
Confidence 56778889999988877555332 1334578888876554 5775 68999999987 899999999999999998665
Q ss_pred hHHHHHHHhcCCCeEEEEEcCCceEE
Q 001019 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (1188)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l~vss~~v~l 939 (1188)
. +.+.+ .+|..|.+..+- ++.+
T Consensus 83 ~-at~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 83 K-ATQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred c-hhhhc--cCCCEEEEeccc-ceEE
Confidence 3 22222 267777776543 4444
No 30
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=87.40 E-value=0.8 Score=57.20 Aligned_cols=77 Identities=22% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCCCcccC---CCCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEEcCCceE
Q 001019 862 RRPTIIIASRITGEEEI---PVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1188)
Q Consensus 862 ~~P~Ill~~~~~GeEEI---P~gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~vss~~v~ 938 (1188)
..|.|||++..+=.+=+ +.++.||+|..-. ..||.++.||++|||-+..-.. .... -.+|..|.+....+.|.
T Consensus 152 ~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~~-~~~~--~~~G~~v~vDg~~G~v~ 227 (565)
T TIGR01417 152 QDEVILVAEDLTPSETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTKS-VTSQ--VKNGDTVIIDGVKGIVI 227 (565)
T ss_pred CCCeEEEecCCCHHHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcchh-HHhh--CCCCCEEEEECCCCEEE
Confidence 45778888743211111 1259999998665 8899999999999997765442 3322 23699999988887777
Q ss_pred Eeec
Q 001019 939 ISDI 942 (1188)
Q Consensus 939 l~~~ 942 (1188)
+.+.
T Consensus 228 ~~P~ 231 (565)
T TIGR01417 228 FNPS 231 (565)
T ss_pred eCCC
Confidence 7653
No 31
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=86.15 E-value=0.96 Score=58.30 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=52.8
Q ss_pred CCCeEEEEeCCCCcccCC----CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEEcCCce
Q 001019 862 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1188)
Q Consensus 862 ~~P~Ill~~~~~GeEEIP----~gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~vss~~v 937 (1188)
..|.|||++..+-.+ ++ .+|+||+|..-. ..||.++.||++|||.+.--+ .... ...|..|.+....+.|
T Consensus 320 ~~~~Ilva~~l~ps~-~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTATL-LAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCHHH-HHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 456788887432111 22 169999998775 889999999999999764333 2222 2359999998887778
Q ss_pred EEeecC
Q 001019 938 IISDIS 943 (1188)
Q Consensus 938 ~l~~~~ 943 (1188)
.+.+.+
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 777643
No 32
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=86.01 E-value=1.1 Score=55.43 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCCeEEEEeCCCCcccCCC---------CcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEE
Q 001019 862 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (1188)
Q Consensus 862 ~~P~Ill~~~~~GeEEIP~---------gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~v 932 (1188)
++|.||+++ |+.| .|.|++|..-+ ..||.++.||..+||-+.-... ....++ +|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~-~~~~v~--~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGA-ATLAVK--DGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcH-Hhhccc--CCCEEEEEC
Confidence 457888887 5654 59999997766 7899999999999999987775 333333 899999998
Q ss_pred cCCceEEeecC
Q 001019 933 KSTNLIISDIS 943 (1188)
Q Consensus 933 ss~~v~l~~~~ 943 (1188)
..+.|.+.+.+
T Consensus 224 ~~G~vi~nP~~ 234 (574)
T COG1080 224 INGEVIVNPDE 234 (574)
T ss_pred CCCeEEECcCH
Confidence 88788887643
No 33
>PRK03955 hypothetical protein; Reviewed
Probab=80.75 E-value=6.5 Score=40.48 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=64.2
Q ss_pred EEeeceeEEEEEEEecchhc----ccccc-----cC--------CCeEEEEeCCCCccc--------CCCC--cEEEEcC
Q 001019 836 QVISPVEVCGFITSVNELIT----LQNKV-----YR--------RPTIIIASRITGEEE--------IPVG--VVAVLTP 888 (1188)
Q Consensus 836 qvispG~A~G~L~~V~~l~~----v~~~~-----~~--------~P~Ill~~~~~GeEE--------IP~g--VaGVit~ 888 (1188)
..+++|.|.|++.+.++-.. +.+.+ .. .-.||++....|--- .-.| =+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988875221 11111 01 235888887777621 1112 3688998
Q ss_pred CCCCcchhhhhhcccCCceEEEeechHHHHHHHhcCCCeEEEEEcCCceEE
Q 001019 889 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 939 (1188)
Q Consensus 889 ~~~d~LSHvaVRARn~gVp~atc~d~~~~~~l~~l~Gk~V~l~vss~~v~l 939 (1188)
+.-+.|||-++-| +||.+...+ .+.|+ +|.+|++..+...|.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 8877999999999 999998666 33332 8999998866554544
No 34
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=80.25 E-value=1.8 Score=35.66 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=27.3
Q ss_pred hhhhhhhHhhhhccCCCCCCChhhhhHHHHHHHHHHHH
Q 001019 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (1188)
Q Consensus 138 ~~li~~~ay~~We~~gkp~~~~e~~~~e~~~A~~~l~~ 175 (1188)
++.|..+||..||..|+|.-.++ +...+|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788999999999999976654 556677777654
No 35
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=65.90 E-value=2.7 Score=54.25 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=73.5
Q ss_pred chhhccccHHHHhhhhhHHHHHHHHhhHHHHHHHhcCCCcEEeeceeEEEEEEEecchhcccccccCCCeEEEEeCCCCc
Q 001019 796 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 875 (1188)
Q Consensus 796 ~~~v~~FtEe~IRas~~f~lS~ll~~L~p~lr~~a~l~~wqvispG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~Ge 875 (1188)
+|.++- .+-++|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++.+..+. ......+||+....+.|
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~pd 377 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDPD 377 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCHH
Confidence 455554 5567777777666666555555 111112333 8999999999998876664 22234578888865443
Q ss_pred ccCC-C-CcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHH
Q 001019 876 EEIP-V-GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNIL 917 (1188)
Q Consensus 876 EEIP-~-gVaGVit~~~~d~LSHvaVRARn~gVp~atc~d~~~~ 917 (1188)
- +| . .-.||+|.+-. ..||-+|.||.+|+|-+.--.....
T Consensus 378 ~-~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~~~~ 419 (740)
T COG0574 378 W-VPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGSATK 419 (740)
T ss_pred H-hhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCchhhh
Confidence 3 44 2 35577765555 8999999999999998865543333
No 36
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=63.29 E-value=4.8 Score=49.98 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=40.3
Q ss_pred ccccCCCeEEEEeCCCCcc--cCC-CCcEEEEcCCCCCcchhhhhhcccCCceEEEe
Q 001019 858 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (1188)
Q Consensus 858 ~~~~~~P~Ill~~~~~GeE--EIP-~gVaGVit~~~~d~LSHvaVRARn~gVp~atc 911 (1188)
...+.++.|+|++..+-.| |.| ...+||++.+-. .-||+++.||.+|||.+--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~ 378 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMG 378 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceecc
Confidence 3456778899998654433 344 269999997754 7899999999999998854
No 37
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.75 E-value=1.3e+02 Score=34.31 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 001019 466 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQRNNG---------CKTG---------MMEEW 526 (1188)
Q Consensus 466 ~~~t~~~~~~~~~~~~~r~~~R~~l~t~~RGG~g~~Gq-~iRd~IL~i~r~n~---------~kgg---------~~eeW 526 (1188)
+|++..+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ +.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888788999999999988877 777777887 55554433332221 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHHcCCChh
Q 001019 527 HQKLHNNTSPDDIIICEALLNYIRCGFKID 556 (1188)
Q Consensus 527 HQKLHnNTtpDDv~ICea~l~~l~s~~~~~ 556 (1188)
-++ ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 654
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=30.95 E-value=6.5e+02 Score=35.75 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHhhccccCCCcH-HHHHHHHHHHHhhhh---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hC
Q 001019 709 HPPEIMFFISLLLESLCLSVVNNE-DLIYCTKDWYRVSES---YRTNDAQWALQAKAILDRLQLVLAERSQTYQKK--FQ 782 (1188)
Q Consensus 709 ~~~~~~~~~~~~l~nl~ls~~~n~-~l~~~l~~W~~~~~~---~~~~~~~wAL~lkA~LdR~rr~~e~~~d~~~~~--~q 782 (1188)
+|||++.++.-|||||.+-.|.|- +.. ..-..+..+ ..+..+| -.|||+|--.=.+-+..++.=..+ .+
T Consensus 406 ~peeL~QV~AsvLRNLSWRAD~nmKkvL---rE~GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaVD 480 (2195)
T KOG2122|consen 406 APEELLQVYASVLRNLSWRADSNMKKVL---RETGSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAVD 480 (2195)
T ss_pred ChHHHHHHHHHHHHhccccccccHHHHH---HhhhhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhccc
Confidence 589999999999999999887542 111 111111110 0011111 247788877766655444433332 36
Q ss_pred chHHHhhhhcCcc--chhhccccHHHHhhhhhHHHHHHHHhhHHH
Q 001019 783 PSVKYLGCLLGVE--KYVIDNFTEELVRAQSEAVLSILINRFEPV 825 (1188)
Q Consensus 783 p~a~~LG~~lgie--~~~v~~FtEe~IRas~~f~lS~ll~~L~p~ 825 (1188)
..-.+|-+.|.++ .+...+.-- -+|++-.+|.+|..=.++
T Consensus 481 GALaFLVg~LSY~~qs~tLaIIEs---aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 481 GALAFLVGTLSYEGQSNTLAIIES---AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred chHHHHHhhccccCCcchhhhhhc---CccHHHHHHhHhhccchH
Confidence 6677888888888 444432211 256666777776655554
No 39
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=30.88 E-value=58 Score=36.82 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.8
Q ss_pred ChhhHHHHHhhC-CCChhhhhcCCCC
Q 001019 554 KIDAYWQTLNCH-GLSKQKLASYDRP 578 (1188)
Q Consensus 554 ~~~~yw~~L~~~-git~erl~s~dr~ 578 (1188)
|.-++|..+-+. |+|+|++.|++ |
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-p 116 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-P 116 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-C
Confidence 667799999996 99999999999 6
No 40
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=28.77 E-value=44 Score=37.72 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhhccCCCCCCCchhh
Q 001019 461 ISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRI 505 (1188)
Q Consensus 461 ~s~aq~~~t~~~~~~~~~~~~~r~~~R~~l~t~~RGG~g~~Gq~i 505 (1188)
+++-|..|...||+.+..+-..++..|---.||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 45667899999999999999999988888999999998 56654
No 41
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=21.68 E-value=86 Score=27.92 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=19.9
Q ss_pred cCCCCCCChhhhhHHHHHHHHHHH
Q 001019 151 RRGRPNNSPQQQQKDYNDALKELQ 174 (1188)
Q Consensus 151 ~~gkp~~~~e~~~~e~~~A~~~l~ 174 (1188)
...++.-|-|+++++|.+||.-|-
T Consensus 32 ~~~~~~kSlEERE~eY~~AR~RIF 55 (59)
T PF12752_consen 32 RKKRPSKSLEEREAEYAEARARIF 55 (59)
T ss_pred ccccccCCHHHHHHHHHHHHHHHh
Confidence 456677888999999999998764
No 42
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=20.56 E-value=83 Score=26.54 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCchHHHHHHHHHHHHcC
Q 001019 533 NTSPDDIIICEALLNYIRCG 552 (1188)
Q Consensus 533 NTtpDDv~ICea~l~~l~s~ 552 (1188)
.-|+||-.||.|+.+|-.+-
T Consensus 14 GdteddT~v~r~l~~yY~~k 33 (41)
T PF14475_consen 14 GDTEDDTHVHRVLRKYYTEK 33 (41)
T ss_pred CCCcchhHHHHHHHHHHHHc
Confidence 45899999999999997765
No 43
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=3.9e+02 Score=30.90 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred eEEEEEEEeeCcceEEEEEecCCCC----eEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecc-cCCCceeeE
Q 001019 264 HEIVVLSKIISSDYHILVAVNMKGA----AILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDI-ATARGSFQM 338 (1188)
Q Consensus 264 ~el~V~v~~~~gk~~V~v~td~~~~----lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~-~~~~~~~~~ 338 (1188)
+.|..+|+.+|..|.+.|-|+.--+ =..|.-+-.+++.-|. +...||.+. .+..+..|-
T Consensus 202 n~L~LrvRGDGRsy~inihte~~~dq~wndsys~flft~gGp~wq----------------~~KIPfSKff~t~kGriqD 265 (323)
T KOG2435|consen 202 NTLYLRVRGDGRSYMINIHTETDFDQRWNDSYSYFLFTRGGPYWQ----------------EVKIPFSKFFFTNKGRIQD 265 (323)
T ss_pred ceEEEEEecCCceEEEEecCccchhhhcccceeeEEecCCCCcee----------------EEecchhhheeccccceee
Confidence 6688999999999999996654322 2333333333444442 344677774 233455676
Q ss_pred EEEEccCCceeEEEEEEecCCcccccCCcceEEecC
Q 001019 339 VDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLH 374 (1188)
Q Consensus 339 lei~l~~d~~~gi~FVLk~~~~W~kn~G~DF~Vpl~ 374 (1188)
.+-+++-+..++|-|+|.+. .+++|++.+.
T Consensus 266 rq~e~nl~~vssig~sl~dk------~dGpF~LEID 295 (323)
T KOG2435|consen 266 RQHELNLDKVSSIGFSLADK------VDGPFFLEID 295 (323)
T ss_pred cccccCccceeeEeEEEeec------cCCcceeeEE
Confidence 66677778899999999653 5677766554
Done!