BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001020
(1187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSK 74
P +Y+VFLSFRG DTR+ FT LY +L R I TF D+ +L++G EI P LL AI SK
Sbjct: 32 PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSK 91
Query: 75 ISVIIFSEGYASSRWCLEEIVKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFL 134
I V I S GYA S+WCL E+ +I+ + +++ +I++P+FY VDPSDVR+QTG + F
Sbjct: 92 IYVPIISSGYADSKWCLMELAEIVR-RQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFR 150
Query: 135 KLEERFMEWPEKLESWRIALREAANLSGFASHAIRPESLLIEKIVGEILKRLN 187
K +F + +++W+ AL++ +L G+ + + +K+ +I ++
Sbjct: 151 KHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 18 AKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKIS 76
KYDVFLSFRG DTR NF S LY L R++I TF D+ +L G SP L I S+ +
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 77 VIIFSEGYASSRWCLEEIVKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKL 136
V++ SE YA+S WCL+E+V I++ + +I V+P+FY V+P+ VR QTG+ + F K
Sbjct: 67 VVVVSENYAASSWCLDELVTIMDFEKKGSI--TVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 137 EERFMEWPEKLESWRIALREAANLSGFASHAIRPESLLIEKIVGEI 182
R E PEK+ WR AL A LSG S +S L++KI EI
Sbjct: 125 ASR--EDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEI 166
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 614 NLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLL 673
NL +L + + + L L NLK + + +S P + +E+L+L GC++L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 674 EIHPSIKYLNKLAILSLRHCKCIKSLPTSIH-LESLKQLFLSGCSNLNTFPEI 725
P L L L+ C + +LP IH L L++L L GC NL+ P +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
Query: 790 LPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTM----- 844
LPD L + R+ +R LP+SI LN L LS + + L +
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 845 -SGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSY 903
GL L +L L GI LP S+ L +L L + + +I HL L L L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 904 CERLQSLPEL 913
C L++ P +
Sbjct: 239 CTALRNYPPI 248
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 42/228 (18%)
Query: 588 YVFSELKYFHWNGYPLKAMPSYIHQ-ENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHS 646
+ S L++ + L +P Q L L + + + L L L+ + +
Sbjct: 101 FRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Query: 647 KQLTEIPDLSLAS-----------NIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKC 695
+LTE+P+ LAS N++ L L+ + + + SI L L L +R+
Sbjct: 161 PELTELPE-PLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 696 IKSLPTSIHLESLKQLFLSGCSNLNTFPEI---ACTIEELFL-DGTAIEELPLSIECLSR 751
P HL L++L L GC+ L +P I ++ L L D + + LPL I L++
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 752 LITLNXXXXXXXXXXXXXXXXXXXXQHLNLFGCTKVERLPDEFGNLEA 799
L + L+L GC + RLP L A
Sbjct: 279 L------------------------EKLDLRGCVNLSRLPSLIAQLPA 302
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 850 LTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQS 909
L + + G+ ELP++ Q + L L RN +P SI L L L + C L
Sbjct: 106 LQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165
Query: 910 LPE 912
LPE
Sbjct: 166 LPE 168
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 99/250 (39%), Gaps = 23/250 (9%)
Query: 600 GYPLKAMPSYIH---QENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLS 656
G LKA + Q +ALE+ + + A +L +L++ + + L E+PD
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTID-AAGLXELPDTX 123
Query: 657 LA-SNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSG 715
+ +E L L + L + SI LN+L LS+R C + LP E L SG
Sbjct: 124 QQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELP-----EPLASTDASG 177
Query: 716 CSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNXXXXXXXXXXXXXXXXXXX 775
+ ++ L L+ T I LP SI L L +L
Sbjct: 178 EH------QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK-IRNSPLSALGPAIHHLPK 230
Query: 776 XQHLNLFGCTKVERLPDEFGNLEALMEMKAVR-SSIRELPSSIVQLNNLYRLSFERYQGK 834
+ L+L GCT + P FG L + S++ LP I +L L +L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 835 SHMGLRLPTM 844
S RLP++
Sbjct: 291 S----RLPSL 296
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 19 KYDVFLSFRGED---TRDNFTSHL---YAALCRKNIETFIDNQLIRGDEISPALLDAIGG 72
KYD +L F +D ++ HL Y+ R N+ F + + G+ + DAI
Sbjct: 670 KYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNL-CFEERDFVPGENRIANIQDAIWN 728
Query: 73 SKISVIIFSEGYASSRWCLEEIVKIL-ECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGD 131
S+ V + S + WCLE C +D N I+V V +++Q+
Sbjct: 729 SRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQS---IR 785
Query: 132 GFLKLEERFMEWPEKLE 148
GF++ +++++ WPE +
Sbjct: 786 GFVQ-KQQYLRWPEDFQ 801
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 780 NLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-------PSSIVQLNNLYR----LSF 828
N G ++E L + NL+ + E +V S+R L + V N ++ L
Sbjct: 415 NFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473
Query: 829 ERYQGKSHMGLRLPTM-SGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERI 886
+ G S LP + + LR LT L+LS C + +L P + LSSL +L NNF +
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Query: 887 PT 888
T
Sbjct: 534 DT 535
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 13 NLRPEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDNQLIR-GDEISPALLDAIG 71
+L +D+F+S ED D F L L E + D+ +R GD + ++ +G
Sbjct: 14 DLTSAPPHDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLG 72
Query: 72 GSKISVIIFSEGYASSRWCLEEIVKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGD 131
S+ +++ S + W +E+ + + ++ ++P++++V +V + + D
Sbjct: 73 SSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGR--SRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 780 NLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-------PSSIVQLNNLYR----LSF 828
N G ++E L + NL+ + E +V S+R L + V N ++ L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 829 ERYQGKSHMGLRLPTM-SGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERI 886
+ G S LP + + LR LT L+LS C + +L P + LSSL +L NNF +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 887 PT 888
T
Sbjct: 510 DT 511
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 536 TIEGISLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKY 595
++ +SL+ + ++ L+P++F + LR+L + + + H D+ F LKY
Sbjct: 273 SLRYLSLEYNNIQ--RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 596 FHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLT 650
+ +PS + + + S+ K + Q L N ++ L+HS LT
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLT 385
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 780 NLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-------PSSIVQLNNLYR----LSF 828
N G ++E L + NL+ + E +V S+R L + V N ++ L
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154
Query: 829 ERYQGKSHMGLRLPTM-SGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERI 886
+ G S LP + + LR LT L+LS C + +L P + LSSL +L NNF +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Query: 887 PT 888
T
Sbjct: 215 DT 216
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 851 TNLNLSDCGITELPNSLG-QLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE-RLQ 908
+ L L+ ++ LP++L Q++ L I + +P S+ +L C+ RL
Sbjct: 62 SELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYL--------DACDNRLS 113
Query: 909 SLPELPCNIS--DMDANCCTSLKELSGL 934
+LPELP ++ D+D N T L EL L
Sbjct: 114 TLPELPASLKHLDVDNNQLTXLPELPAL 141
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 258 ESERTGGLSQLRQ--KLFSEDESLSVGIPNVGLNFRGKR------LSRK--KIIIVFDDV 307
+ +++G L +L+ +DES S +P LN + + RK + +++ DDV
Sbjct: 195 KQDKSGLLMKLQNLCTRLDQDESFSQRLP---LNIEEAKDRLRILMLRKHPRSLLILDDV 251
Query: 308 TCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDG---IYEVEALL-DYYALQLFS 363
S +K F S +I++TTRDK V + V G + VE+ L L++ S
Sbjct: 252 WDSWVLKA-------FDSQCQILLTTRDKSVTDS--VMGPKYVVPVESSLGKEKGLEILS 302
Query: 364 RHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGRKMED-WESAANKLKKVPH 422
F + AD E + IIK +G PL + ++G L R + WE +L+
Sbjct: 303 --LFVNMKKAD--LPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQF 356
Query: 423 LDIQKVLKASYDGLDD 438
I+K Y+ LD+
Sbjct: 357 KRIRKSSSYDYEALDE 372
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 35/197 (17%)
Query: 258 ESERTGGLSQLRQ--KLFSEDESLSVGIPNVGLNFRGKR------LSRK--KIIIVFDDV 307
+ +++G L +L+ +DES S +P LN + + RK + +++ DDV
Sbjct: 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLP---LNIEEAKDRLRILMLRKHPRSLLILDDV 245
Query: 308 TCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDG---IYEVEALL-DYYALQLFS 363
S +K F S +I++TTRDK V + V G + VE+ L L++ S
Sbjct: 246 WDSWVLKA-------FDSQCQILLTTRDKSVTDS--VMGPKYVVPVESSLGKEKGLEILS 296
Query: 364 RHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFL--FGRKMEDWESAANKLKKVP 421
F + AD E + IIK +G PL + ++G L F + WE +L+
Sbjct: 297 --LFVNMKKAD--LPEQAHSIIKECKGSPLVVSLIGALLRDFPNR---WEYYLKQLQNKQ 349
Query: 422 HLDIQKVLKASYDGLDD 438
I+K Y+ LD+
Sbjct: 350 FKRIRKSSSYDYEALDE 366
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 335 DKQVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394
D + + R+ I EV + L YY + H F Q + + S KF++ V +
Sbjct: 394 DTFLFRYNRLISINEVGSDLRYYKISPDQFHVFNQKRRGKITLNATSTHDTKFSEDVRMK 453
Query: 395 LKVLGCFL--FGRKMEDWESAAN-KLKKVPHLDIQKVLKAS-YDGLDDE 439
+ VL F + +E+W S N K+ + +VL S Y+G ++
Sbjct: 454 ISVLSEFPEEWKNXVEEWHSIINPKVSRNDEYRYYQVLVGSFYEGFSND 502
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 790 LPDEFGNLEA----LMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSH--------- 836
LP E L A L + + S ++EL S QL +L L E Y+ ++
Sbjct: 159 LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA 218
Query: 837 --MGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRD-------RNNFERIP 887
GL+ +SG R LT+L + + EL S +L+SL +L RN R+P
Sbjct: 219 LPSGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLP 277
Query: 888 TSIIHLTN 895
S+IHL++
Sbjct: 278 ESLIHLSS 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,074,783
Number of Sequences: 62578
Number of extensions: 1433826
Number of successful extensions: 3299
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3241
Number of HSP's gapped (non-prelim): 84
length of query: 1187
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1077
effective length of database: 8,089,757
effective search space: 8712668289
effective search space used: 8712668289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)