Query 001020
Match_columns 1187
No_of_seqs 922 out of 6390
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 13:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6E-150 1E-154 1469.5 94.0 1056 16-1145 9-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.6E-59 7.9E-64 578.7 29.4 453 198-717 161-653 (889)
3 PLN03194 putative disease resi 100.0 2.2E-42 4.7E-47 339.2 16.2 152 18-188 25-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 7.4E-36 1.6E-40 337.2 11.2 267 200-471 1-284 (287)
5 PLN00113 leucine-rich repeat r 100.0 1.9E-31 4.1E-36 351.8 26.6 388 510-905 42-439 (968)
6 PLN00113 leucine-rich repeat r 100.0 2.5E-29 5.5E-34 331.6 25.0 338 592-932 213-588 (968)
7 KOG0444 Cytoskeletal regulator 99.9 9.5E-29 2.1E-33 274.7 -4.3 343 554-912 25-380 (1255)
8 KOG4194 Membrane glycoprotein 99.9 6.3E-27 1.4E-31 259.8 4.9 352 541-903 82-448 (873)
9 KOG4194 Membrane glycoprotein 99.9 4.5E-26 9.7E-31 253.1 4.9 355 541-905 56-427 (873)
10 KOG0444 Cytoskeletal regulator 99.9 6.9E-27 1.5E-31 260.0 -3.5 355 563-932 9-379 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 3.3E-27 7.2E-32 251.7 -7.8 236 592-833 69-309 (565)
12 PLN03210 Resistant to P. syrin 99.9 4.8E-23 1E-27 271.7 25.8 331 588-959 555-909 (1153)
13 KOG0618 Serine/threonine phosp 99.9 2.2E-25 4.8E-30 261.0 -3.0 360 553-927 37-488 (1081)
14 KOG0472 Leucine-rich repeat pr 99.9 5.8E-25 1.3E-29 234.6 -8.9 321 593-925 139-538 (565)
15 KOG0618 Serine/threonine phosp 99.9 2.2E-23 4.9E-28 244.3 -3.7 351 592-954 46-487 (1081)
16 PF01582 TIR: TIR domain; Int 99.8 5.1E-21 1.1E-25 190.3 1.5 134 22-155 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.8 1.6E-18 3.4E-23 211.9 17.8 255 592-905 202-456 (788)
18 smart00255 TIR Toll - interleu 99.8 2.6E-18 5.6E-23 171.4 11.8 137 19-158 1-138 (140)
19 PRK15387 E3 ubiquitin-protein 99.7 7.7E-17 1.7E-21 197.3 16.3 237 591-884 222-458 (788)
20 PRK15370 E3 ubiquitin-protein 99.7 1.1E-16 2.3E-21 197.5 11.9 203 593-815 180-384 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 4.1E-16 8.9E-21 192.4 12.8 242 562-832 179-426 (754)
22 KOG4237 Extracellular matrix p 99.5 4.5E-16 9.8E-21 167.3 -2.1 246 588-834 64-359 (498)
23 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 146.2 -5.0 168 728-928 34-203 (264)
24 KOG0617 Ras suppressor protein 99.5 3.1E-15 6.8E-20 142.8 -2.3 158 603-783 23-182 (264)
25 PF13676 TIR_2: TIR domain; PD 99.4 6.5E-14 1.4E-18 131.1 4.4 91 22-122 1-91 (102)
26 KOG4237 Extracellular matrix p 99.4 6.6E-15 1.4E-19 158.5 -3.0 272 596-905 51-333 (498)
27 cd00116 LRR_RI Leucine-rich re 99.4 2.9E-14 6.2E-19 163.9 1.8 155 750-904 137-317 (319)
28 cd00116 LRR_RI Leucine-rich re 99.4 6.8E-14 1.5E-18 160.8 0.8 257 612-883 22-319 (319)
29 PRK04841 transcriptional regul 99.3 9.7E-11 2.1E-15 154.4 23.0 297 190-506 9-334 (903)
30 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-12 7.2E-17 160.5 6.3 258 602-883 512-782 (889)
31 PRK00080 ruvB Holliday junctio 99.0 3.5E-09 7.6E-14 121.3 14.4 258 191-486 21-310 (328)
32 TIGR00635 ruvB Holliday juncti 99.0 8.2E-09 1.8E-13 117.5 16.8 253 195-486 4-289 (305)
33 PRK00411 cdc6 cell division co 98.9 3.5E-08 7.6E-13 116.8 20.6 281 192-485 27-357 (394)
34 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.8E-14 129.1 7.5 177 728-911 117-294 (394)
35 PF01637 Arch_ATPase: Archaeal 98.9 1.8E-09 4E-14 117.8 8.1 194 197-397 1-233 (234)
36 KOG0532 Leucine-rich repeat (L 98.9 1.9E-10 4E-15 130.0 -0.9 153 728-888 99-251 (722)
37 PF05729 NACHT: NACHT domain 98.9 7.6E-09 1.7E-13 106.3 11.2 142 219-365 1-162 (166)
38 COG4886 Leucine-rich repeat (L 98.9 2.9E-09 6.4E-14 126.0 8.2 188 618-831 98-287 (394)
39 COG3899 Predicted ATPase [Gene 98.9 2.5E-08 5.4E-13 126.5 16.5 306 196-506 1-388 (849)
40 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.8E-15 131.3 -4.6 188 730-926 78-271 (722)
41 KOG1259 Nischarin, modulator o 98.8 1E-09 2.3E-14 114.3 1.2 125 774-905 284-410 (490)
42 COG2909 MalT ATP-dependent tra 98.8 1.1E-07 2.3E-12 113.9 17.6 292 191-508 15-342 (894)
43 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 120.4 0.8 131 748-903 195-335 (505)
44 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3.1E-14 119.7 0.6 106 798-906 197-313 (505)
45 TIGR02928 orc1/cdc6 family rep 98.8 4.7E-07 1E-11 106.0 21.2 246 192-449 12-299 (365)
46 KOG1909 Ran GTPase-activating 98.8 4.5E-10 9.7E-15 120.5 -3.9 134 771-905 154-309 (382)
47 KOG4341 F-box protein containi 98.7 9.6E-10 2.1E-14 120.3 -2.3 285 637-964 139-447 (483)
48 KOG1259 Nischarin, modulator o 98.7 4.9E-09 1.1E-13 109.4 2.0 223 633-888 179-416 (490)
49 PRK06893 DNA replication initi 98.7 2.6E-07 5.6E-12 99.9 14.3 150 218-398 39-203 (229)
50 PF14580 LRR_9: Leucine-rich r 98.6 8.4E-09 1.8E-13 104.7 1.8 124 798-932 19-146 (175)
51 PRK15386 type III secretion pr 98.6 1.6E-07 3.4E-12 106.5 11.8 165 746-962 48-219 (426)
52 TIGR03015 pepcterm_ATPase puta 98.6 1.2E-06 2.7E-11 97.8 18.7 177 218-402 43-242 (269)
53 COG2256 MGS1 ATPase related to 98.6 2.7E-07 5.8E-12 101.8 11.6 150 216-392 46-206 (436)
54 PF14580 LRR_9: Leucine-rich r 98.6 6.2E-08 1.3E-12 98.4 5.2 91 601-694 7-99 (175)
55 KOG3678 SARM protein (with ste 98.5 3.9E-07 8.4E-12 100.2 10.3 144 16-191 609-761 (832)
56 KOG1909 Ran GTPase-activating 98.5 5.5E-09 1.2E-13 112.3 -3.9 136 749-884 156-311 (382)
57 KOG2120 SCF ubiquitin ligase, 98.5 8E-09 1.7E-13 108.1 -4.3 177 613-808 185-373 (419)
58 PRK15386 type III secretion pr 98.5 7.6E-07 1.6E-11 101.0 11.0 70 729-809 54-123 (426)
59 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.5E-06 5.3E-11 92.6 14.1 173 195-400 15-203 (226)
60 PRK13342 recombination factor 98.4 8.3E-06 1.8E-10 96.5 18.9 179 192-399 9-197 (413)
61 COG3903 Predicted ATPase [Gene 98.4 1.7E-07 3.8E-12 104.1 4.0 277 217-504 13-314 (414)
62 PRK07003 DNA polymerase III su 98.3 1.6E-05 3.4E-10 96.2 18.3 182 192-397 13-220 (830)
63 TIGR01242 26Sp45 26S proteasom 98.3 3.3E-06 7.1E-11 98.3 12.4 173 194-392 121-328 (364)
64 PRK04195 replication factor C 98.3 1.1E-05 2.4E-10 97.4 16.7 180 191-397 10-201 (482)
65 PRK14963 DNA polymerase III su 98.3 3.8E-05 8.2E-10 92.0 20.9 185 192-395 11-214 (504)
66 PTZ00112 origin recognition co 98.3 9.9E-06 2.1E-10 98.0 15.6 243 192-448 752-1030(1164)
67 PRK14961 DNA polymerase III su 98.3 2E-05 4.3E-10 91.5 17.8 180 192-395 13-217 (363)
68 PRK14949 DNA polymerase III su 98.3 3E-05 6.5E-10 95.7 19.3 180 192-395 13-217 (944)
69 PRK00440 rfc replication facto 98.3 3.2E-05 7E-10 88.8 18.6 182 193-395 15-200 (319)
70 KOG0531 Protein phosphatase 1, 98.3 1.6E-07 3.5E-12 111.5 -0.5 238 611-884 70-318 (414)
71 PRK12402 replication factor C 98.3 1.3E-05 2.7E-10 92.9 15.2 198 192-397 12-225 (337)
72 KOG2120 SCF ubiquitin ligase, 98.2 4.4E-08 9.5E-13 102.7 -4.9 104 729-832 187-297 (419)
73 PLN03025 replication factor C 98.2 4E-05 8.7E-10 87.5 18.4 182 191-393 9-195 (319)
74 PRK14960 DNA polymerase III su 98.2 4.7E-05 1E-09 91.3 19.3 180 192-395 12-216 (702)
75 PRK05564 DNA polymerase III su 98.2 2E-05 4.3E-10 89.8 15.9 176 195-397 4-189 (313)
76 KOG4341 F-box protein containi 98.2 6.1E-08 1.3E-12 106.5 -4.6 256 632-910 160-442 (483)
77 PRK07471 DNA polymerase III su 98.2 5.5E-05 1.2E-09 87.0 18.8 199 191-398 15-238 (365)
78 PRK08727 hypothetical protein; 98.2 3.1E-05 6.7E-10 84.0 15.7 167 195-394 19-200 (233)
79 PRK14962 DNA polymerase III su 98.2 0.00012 2.7E-09 86.9 21.3 186 191-400 10-221 (472)
80 PF13173 AAA_14: AAA domain 98.2 6.4E-06 1.4E-10 80.4 8.6 119 219-358 3-127 (128)
81 PRK08903 DnaA regulatory inact 98.1 2E-05 4.2E-10 85.6 12.9 173 194-402 17-203 (227)
82 PF05496 RuvB_N: Holliday junc 98.1 1.4E-05 3.1E-10 82.9 10.9 173 191-395 20-218 (233)
83 PRK12323 DNA polymerase III su 98.1 3.8E-05 8.3E-10 91.7 15.3 179 193-395 14-222 (700)
84 KOG2028 ATPase related to the 98.1 2.4E-05 5.2E-10 84.6 12.3 147 194-365 137-293 (554)
85 PRK13341 recombination factor 98.1 2.2E-05 4.7E-10 97.6 13.9 173 192-393 25-212 (725)
86 PF13855 LRR_8: Leucine rich r 98.1 2.2E-06 4.8E-11 71.4 3.5 58 848-905 1-60 (61)
87 PRK05642 DNA replication initi 98.1 6.2E-05 1.3E-09 81.6 15.5 149 219-398 46-208 (234)
88 PRK03992 proteasome-activating 98.1 4E-05 8.7E-10 89.6 15.0 172 194-391 130-336 (389)
89 PRK14957 DNA polymerase III su 98.1 3.9E-05 8.6E-10 92.0 15.1 183 192-398 13-221 (546)
90 TIGR02397 dnaX_nterm DNA polym 98.1 6.5E-05 1.4E-09 87.6 16.8 184 192-399 11-219 (355)
91 PRK08084 DNA replication initi 98.1 8.9E-05 1.9E-09 80.5 16.4 169 197-398 25-209 (235)
92 PRK14956 DNA polymerase III su 98.1 0.00014 3E-09 85.0 18.5 183 192-393 15-217 (484)
93 cd00009 AAA The AAA+ (ATPases 98.1 2E-05 4.4E-10 78.6 10.5 123 198-337 1-131 (151)
94 PRK09087 hypothetical protein; 98.1 4.8E-05 1E-09 81.7 13.8 138 218-397 44-194 (226)
95 PLN03150 hypothetical protein; 98.1 6.4E-06 1.4E-10 102.4 7.8 105 614-718 419-527 (623)
96 PRK08691 DNA polymerase III su 98.0 0.00012 2.6E-09 88.7 18.0 181 192-396 13-218 (709)
97 KOG0531 Protein phosphatase 1, 98.0 1.5E-06 3.2E-11 103.3 1.6 167 591-761 95-266 (414)
98 PRK14964 DNA polymerase III su 98.0 0.0002 4.4E-09 84.7 19.3 179 192-394 10-213 (491)
99 PRK07940 DNA polymerase III su 98.0 6.8E-05 1.5E-09 87.0 15.0 177 195-398 5-213 (394)
100 PRK06645 DNA polymerase III su 98.0 0.00029 6.3E-09 84.1 20.5 184 192-394 18-225 (507)
101 PLN03150 hypothetical protein; 98.0 9.5E-06 2.1E-10 100.8 8.4 91 729-819 420-512 (623)
102 TIGR00678 holB DNA polymerase 98.0 0.0001 2.2E-09 77.3 14.4 160 206-394 3-187 (188)
103 PF13191 AAA_16: AAA ATPase do 98.0 8.2E-06 1.8E-10 85.4 6.1 50 196-245 1-51 (185)
104 PRK05896 DNA polymerase III su 98.0 0.00025 5.5E-09 85.2 19.1 184 191-398 12-221 (605)
105 PRK07994 DNA polymerase III su 98.0 4.5E-05 9.9E-10 92.8 13.0 180 192-395 13-217 (647)
106 PTZ00202 tuzin; Provisional 98.0 3.6E-05 7.9E-10 86.8 10.9 195 158-365 217-433 (550)
107 PRK14955 DNA polymerase III su 98.0 0.00019 4.1E-09 84.4 17.6 186 191-395 12-225 (397)
108 PRK14970 DNA polymerase III su 98.0 0.00042 9.1E-09 81.0 20.4 181 191-394 13-205 (367)
109 PRK14951 DNA polymerase III su 98.0 0.00043 9.4E-09 84.3 20.7 180 192-395 13-222 (618)
110 PTZ00361 26 proteosome regulat 98.0 5.2E-05 1.1E-09 88.7 12.4 155 193-369 181-370 (438)
111 PF00308 Bac_DnaA: Bacterial d 97.9 0.00015 3.4E-09 77.6 14.5 154 217-392 33-202 (219)
112 PF13855 LRR_8: Leucine rich r 97.9 1.2E-05 2.6E-10 66.9 4.1 56 614-669 2-59 (61)
113 PRK14958 DNA polymerase III su 97.9 0.00025 5.5E-09 85.2 17.0 180 192-395 13-217 (509)
114 PRK09112 DNA polymerase III su 97.9 0.00024 5.3E-09 81.3 16.1 194 191-398 19-240 (351)
115 KOG2982 Uncharacterized conser 97.9 4.4E-06 9.6E-11 88.0 1.8 99 595-693 49-156 (418)
116 PF14516 AAA_35: AAA-like doma 97.9 0.0016 3.5E-08 74.5 22.5 203 191-405 7-246 (331)
117 TIGR02881 spore_V_K stage V sp 97.9 0.00022 4.8E-09 79.0 14.9 154 196-368 7-193 (261)
118 PRK14954 DNA polymerase III su 97.8 0.00094 2E-08 81.7 20.8 183 192-393 13-223 (620)
119 PRK14959 DNA polymerase III su 97.8 0.00027 5.9E-09 85.3 15.9 185 193-401 14-224 (624)
120 PRK09111 DNA polymerase III su 97.8 0.00061 1.3E-08 83.2 19.1 187 192-397 21-232 (598)
121 PRK14952 DNA polymerase III su 97.8 0.00052 1.1E-08 83.3 17.9 182 193-398 11-220 (584)
122 KOG0989 Replication factor C, 97.8 0.00069 1.5E-08 72.7 15.9 191 191-398 32-231 (346)
123 PTZ00454 26S protease regulato 97.8 0.0003 6.6E-09 81.8 14.7 173 193-391 143-350 (398)
124 PRK14969 DNA polymerase III su 97.8 0.00021 4.6E-09 86.5 13.6 177 193-393 14-215 (527)
125 PRK07133 DNA polymerase III su 97.8 0.00034 7.3E-09 85.8 15.1 182 192-397 15-219 (725)
126 PRK07764 DNA polymerase III su 97.8 0.00077 1.7E-08 85.2 18.7 177 193-393 13-216 (824)
127 KOG1859 Leucine-rich repeat pr 97.8 8.2E-07 1.8E-11 103.5 -6.9 128 728-861 165-292 (1096)
128 PRK14950 DNA polymerase III su 97.8 0.00089 1.9E-08 82.7 19.0 183 192-398 13-221 (585)
129 PRK14953 DNA polymerase III su 97.7 0.0023 4.9E-08 76.7 21.6 181 193-397 14-219 (486)
130 PRK08451 DNA polymerase III su 97.7 0.0018 4E-08 77.5 20.4 183 192-397 11-217 (535)
131 PRK06305 DNA polymerase III su 97.7 0.00059 1.3E-08 81.1 16.1 180 192-393 14-217 (451)
132 COG1474 CDC6 Cdc6-related prot 97.7 0.00082 1.8E-08 77.3 16.3 243 192-450 14-291 (366)
133 PRK09376 rho transcription ter 97.7 5.4E-05 1.2E-09 85.3 6.2 88 219-311 170-269 (416)
134 KOG1859 Leucine-rich repeat pr 97.7 2.6E-06 5.6E-11 99.5 -4.8 173 743-926 102-290 (1096)
135 PHA02544 44 clamp loader, smal 97.7 0.00032 7E-09 80.3 12.3 150 191-364 17-171 (316)
136 PRK14087 dnaA chromosomal repl 97.7 0.00034 7.4E-09 83.1 12.8 166 218-401 141-322 (450)
137 PRK06647 DNA polymerase III su 97.6 0.0027 5.8E-08 77.4 20.5 180 192-395 13-217 (563)
138 PRK14971 DNA polymerase III su 97.6 0.0029 6.3E-08 78.0 21.1 177 192-393 14-217 (614)
139 TIGR02880 cbbX_cfxQ probable R 97.6 0.0011 2.3E-08 74.2 15.6 130 220-368 60-210 (284)
140 PF08937 DUF1863: MTH538 TIR-l 97.6 9.7E-05 2.1E-09 72.1 6.3 82 20-102 1-100 (130)
141 PF13401 AAA_22: AAA domain; P 97.6 0.00012 2.6E-09 71.8 6.9 111 218-335 4-125 (131)
142 KOG2982 Uncharacterized conser 97.6 1.8E-05 4E-10 83.5 0.8 185 726-911 70-266 (418)
143 PF12799 LRR_4: Leucine Rich r 97.6 6.8E-05 1.5E-09 57.3 3.7 39 849-887 2-40 (44)
144 COG2255 RuvB Holliday junction 97.6 0.0013 2.8E-08 69.9 13.9 259 191-486 22-311 (332)
145 PRK06620 hypothetical protein; 97.5 0.00033 7.3E-09 74.6 9.6 130 219-392 45-183 (214)
146 TIGR03689 pup_AAA proteasome A 97.5 0.0006 1.3E-08 81.1 12.6 158 194-366 181-378 (512)
147 KOG3665 ZYG-1-like serine/thre 97.5 2E-05 4.3E-10 97.6 0.1 152 749-903 121-284 (699)
148 PRK14948 DNA polymerase III su 97.5 0.0021 4.6E-08 79.1 17.4 181 193-397 14-221 (620)
149 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0011 2.4E-08 84.9 15.1 170 174-365 169-362 (852)
150 TIGR02639 ClpA ATP-dependent C 97.5 0.00076 1.7E-08 85.7 13.3 167 174-366 164-358 (731)
151 TIGR00362 DnaA chromosomal rep 97.5 0.0023 5E-08 75.8 16.4 157 218-396 136-308 (405)
152 cd01128 rho_factor Transcripti 97.4 0.00019 4E-09 78.0 6.2 90 218-310 16-115 (249)
153 CHL00181 cbbX CbbX; Provisiona 97.4 0.0029 6.2E-08 70.7 15.4 132 219-369 60-212 (287)
154 PF12799 LRR_4: Leucine Rich r 97.4 0.00014 3.1E-09 55.6 3.3 42 871-913 1-42 (44)
155 PRK07399 DNA polymerase III su 97.4 0.0054 1.2E-07 69.4 17.4 193 195-398 4-221 (314)
156 TIGR02903 spore_lon_C ATP-depe 97.4 0.0011 2.4E-08 82.0 12.6 50 191-242 150-199 (615)
157 PRK05563 DNA polymerase III su 97.4 0.0029 6.4E-08 77.3 16.0 179 192-394 13-216 (559)
158 PRK14088 dnaA chromosomal repl 97.4 0.0014 3E-08 77.9 12.9 156 218-396 130-303 (440)
159 COG1222 RPT1 ATP-dependent 26S 97.4 0.0018 3.8E-08 71.2 12.3 196 195-417 151-392 (406)
160 PRK14965 DNA polymerase III su 97.4 0.0062 1.4E-07 74.9 18.8 183 192-398 13-221 (576)
161 PRK00149 dnaA chromosomal repl 97.4 0.0012 2.6E-08 79.2 12.4 157 218-396 148-320 (450)
162 PRK05707 DNA polymerase III su 97.4 0.0022 4.8E-08 72.8 13.8 157 218-398 22-203 (328)
163 PRK10865 protein disaggregatio 97.3 0.0015 3.2E-08 84.1 13.6 169 174-366 160-354 (857)
164 TIGR00767 rho transcription te 97.3 0.00037 8E-09 79.2 6.9 91 218-311 168-268 (415)
165 PRK12422 chromosomal replicati 97.3 0.0019 4.1E-08 76.5 12.7 150 219-390 142-305 (445)
166 PF05673 DUF815: Protein of un 97.3 0.0092 2E-07 63.3 15.9 122 192-340 24-155 (249)
167 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0024 5.2E-08 82.4 13.6 169 174-366 155-349 (852)
168 KOG3665 ZYG-1-like serine/thre 97.2 9.4E-05 2E-09 91.7 0.7 125 705-830 147-284 (699)
169 TIGR01241 FtsH_fam ATP-depende 97.2 0.0015 3.2E-08 79.4 11.0 171 194-391 54-259 (495)
170 CHL00095 clpC Clp protease ATP 97.2 0.0024 5.1E-08 82.3 13.0 166 174-364 161-352 (821)
171 PF00004 AAA: ATPase family as 97.2 0.0017 3.6E-08 63.6 9.1 23 221-243 1-23 (132)
172 CHL00176 ftsH cell division pr 97.2 0.0019 4.1E-08 79.6 11.4 171 193-390 181-386 (638)
173 PRK14086 dnaA chromosomal repl 97.2 0.0028 6.1E-08 76.4 12.4 149 219-391 315-481 (617)
174 KOG2543 Origin recognition com 97.1 0.011 2.4E-07 65.5 14.5 165 193-365 4-192 (438)
175 KOG4579 Leucine-rich repeat (L 97.1 4.3E-05 9.3E-10 71.8 -3.4 64 847-911 76-139 (177)
176 COG5238 RNA1 Ran GTPase-activa 97.0 0.00012 2.7E-09 76.4 -0.4 42 770-811 88-133 (388)
177 KOG1644 U2-associated snRNP A' 97.0 0.00087 1.9E-08 67.7 5.2 84 795-880 61-149 (233)
178 TIGR00602 rad24 checkpoint pro 97.0 0.006 1.3E-07 74.7 13.5 53 191-243 80-135 (637)
179 TIGR01243 CDC48 AAA family ATP 97.0 0.0069 1.5E-07 77.3 14.5 173 194-392 177-381 (733)
180 PRK11034 clpA ATP-dependent Cl 97.0 0.003 6.4E-08 79.4 10.5 65 174-243 168-232 (758)
181 COG0466 Lon ATP-dependent Lon 97.0 0.016 3.6E-07 69.4 15.8 186 168-366 285-508 (782)
182 TIGR01243 CDC48 AAA family ATP 96.9 0.011 2.3E-07 75.6 15.6 152 195-368 453-637 (733)
183 COG1373 Predicted ATPase (AAA+ 96.9 0.012 2.5E-07 69.0 14.5 134 202-362 24-163 (398)
184 PRK08116 hypothetical protein; 96.9 0.0022 4.7E-08 71.0 7.9 34 219-252 115-148 (268)
185 PRK12377 putative replication 96.9 0.0077 1.7E-07 65.4 11.7 35 218-252 101-135 (248)
186 PF08357 SEFIR: SEFIR domain; 96.9 0.0012 2.5E-08 66.5 5.1 64 21-84 2-70 (150)
187 PRK08058 DNA polymerase III su 96.9 0.012 2.7E-07 67.2 14.1 150 196-365 6-181 (329)
188 PRK07952 DNA replication prote 96.8 0.016 3.4E-07 62.8 13.4 35 218-252 99-133 (244)
189 COG0593 DnaA ATPase involved i 96.8 0.0099 2.1E-07 68.3 12.2 134 217-370 112-261 (408)
190 PRK06871 DNA polymerase III su 96.8 0.024 5.1E-07 64.1 14.7 164 204-394 11-199 (325)
191 PRK10787 DNA-binding ATP-depen 96.8 0.028 6E-07 71.4 17.0 80 167-246 283-377 (784)
192 KOG0991 Replication factor C, 96.8 0.0077 1.7E-07 62.0 9.6 50 193-244 25-74 (333)
193 PRK06090 DNA polymerase III su 96.7 0.058 1.3E-06 60.8 17.2 166 204-398 12-201 (319)
194 PLN00020 ribulose bisphosphate 96.7 0.021 4.6E-07 64.0 13.3 154 216-393 146-333 (413)
195 PRK08181 transposase; Validate 96.7 0.0031 6.7E-08 69.3 6.8 34 219-252 107-140 (269)
196 KOG1947 Leucine rich repeat pr 96.7 0.00026 5.7E-09 86.3 -1.7 36 896-931 403-443 (482)
197 PRK07993 DNA polymerase III su 96.7 0.029 6.3E-07 64.0 14.7 166 204-395 11-201 (334)
198 KOG0733 Nuclear AAA ATPase (VC 96.6 0.015 3.3E-07 68.0 12.0 52 195-246 190-251 (802)
199 PRK08769 DNA polymerase III su 96.6 0.097 2.1E-06 59.1 18.3 94 297-399 112-209 (319)
200 KOG2227 Pre-initiation complex 96.6 0.02 4.4E-07 65.2 12.6 203 193-399 148-373 (529)
201 KOG0730 AAA+-type ATPase [Post 96.6 0.02 4.4E-07 68.0 13.1 164 197-382 436-631 (693)
202 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0038 8.3E-08 68.0 6.7 52 219-273 70-121 (274)
203 CHL00195 ycf46 Ycf46; Provisio 96.6 0.026 5.6E-07 67.5 14.2 151 195-368 228-407 (489)
204 COG3267 ExeA Type II secretory 96.6 0.044 9.6E-07 58.0 13.8 179 216-400 49-247 (269)
205 KOG1644 U2-associated snRNP A' 96.6 0.0036 7.8E-08 63.4 5.5 81 590-670 41-124 (233)
206 PRK10536 hypothetical protein; 96.5 0.0075 1.6E-07 64.8 8.1 53 193-249 53-107 (262)
207 TIGR02640 gas_vesic_GvpN gas v 96.5 0.026 5.6E-07 62.5 12.7 36 204-243 11-46 (262)
208 TIGR00763 lon ATP-dependent pr 96.5 0.064 1.4E-06 68.8 17.7 52 195-246 320-375 (775)
209 KOG2739 Leucine-rich acidic nu 96.4 0.002 4.3E-08 68.1 2.9 102 821-927 43-155 (260)
210 PF07728 AAA_5: AAA domain (dy 96.4 0.005 1.1E-07 61.0 5.6 22 221-242 2-23 (139)
211 COG5238 RNA1 Ran GTPase-activa 96.4 0.0011 2.4E-08 69.5 0.8 88 746-833 88-197 (388)
212 PRK10865 protein disaggregatio 96.3 0.031 6.6E-07 72.1 13.7 51 194-244 567-624 (857)
213 PF13177 DNA_pol3_delta2: DNA 96.3 0.019 4.1E-07 58.3 9.5 137 199-353 1-161 (162)
214 PRK06921 hypothetical protein; 96.3 0.0054 1.2E-07 67.7 5.8 36 218-253 117-153 (266)
215 PRK11331 5-methylcytosine-spec 96.3 0.0072 1.6E-07 70.1 6.9 54 195-252 175-230 (459)
216 smart00382 AAA ATPases associa 96.3 0.0065 1.4E-07 59.7 5.9 34 219-252 3-36 (148)
217 PRK09183 transposase/IS protei 96.3 0.0028 6.1E-08 69.7 3.4 34 219-252 103-136 (259)
218 PF01695 IstB_IS21: IstB-like 96.3 0.0033 7.1E-08 64.9 3.6 34 219-252 48-81 (178)
219 PRK04132 replication factor C 96.3 0.087 1.9E-06 66.6 16.7 153 224-396 570-729 (846)
220 PRK06964 DNA polymerase III su 96.3 0.16 3.5E-06 57.8 17.5 91 297-398 131-225 (342)
221 PRK06526 transposase; Provisio 96.2 0.0054 1.2E-07 67.0 5.3 27 219-245 99-125 (254)
222 KOG4579 Leucine-rich repeat (L 96.2 0.00051 1.1E-08 64.8 -2.3 78 592-669 54-133 (177)
223 PF02562 PhoH: PhoH-like prote 96.2 0.015 3.2E-07 60.9 8.1 128 202-336 7-156 (205)
224 PRK10733 hflB ATP-dependent me 96.2 0.032 6.9E-07 69.8 12.5 127 219-368 186-337 (644)
225 PRK06835 DNA replication prote 96.2 0.008 1.7E-07 68.2 6.5 35 219-253 184-218 (329)
226 PF13207 AAA_17: AAA domain; P 96.2 0.0039 8.5E-08 60.0 3.5 23 220-242 1-23 (121)
227 COG1223 Predicted ATPase (AAA+ 96.2 0.04 8.6E-07 57.9 10.8 171 194-391 120-318 (368)
228 KOG1947 Leucine rich repeat pr 96.2 0.00061 1.3E-08 83.1 -3.0 64 890-964 358-422 (482)
229 PRK00771 signal recognition pa 96.1 0.062 1.3E-06 63.3 13.6 87 146-245 26-122 (437)
230 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0047 1E-07 69.7 3.9 49 195-243 51-103 (361)
231 PRK11889 flhF flagellar biosyn 96.1 0.061 1.3E-06 61.3 12.5 29 217-245 240-268 (436)
232 KOG0735 AAA+-type ATPase [Post 96.0 0.038 8.3E-07 65.8 10.8 161 218-398 431-616 (952)
233 PRK08699 DNA polymerase III su 96.0 0.11 2.3E-06 59.2 14.3 68 297-365 113-184 (325)
234 COG2812 DnaX DNA polymerase II 96.0 0.16 3.5E-06 60.4 15.9 179 193-390 14-212 (515)
235 KOG0734 AAA+-type ATPase conta 95.9 0.092 2E-06 60.7 12.9 149 195-366 304-484 (752)
236 PRK05022 anaerobic nitric oxid 95.9 0.17 3.7E-06 61.8 16.5 50 193-242 185-234 (509)
237 KOG0731 AAA+-type ATPase conta 95.9 0.12 2.5E-06 63.6 14.7 176 193-394 309-520 (774)
238 PRK14974 cell division protein 95.9 0.11 2.3E-06 59.2 13.4 29 217-245 139-167 (336)
239 KOG0744 AAA+-type ATPase [Post 95.8 0.035 7.6E-07 60.2 8.8 35 218-252 177-215 (423)
240 TIGR00064 ftsY signal recognit 95.8 0.045 9.8E-07 60.6 10.2 37 216-252 70-106 (272)
241 PRK12608 transcription termina 95.8 0.021 4.5E-07 64.8 7.5 100 207-310 123-232 (380)
242 COG0542 clpA ATP-binding subun 95.8 0.028 6.2E-07 69.4 9.2 118 195-322 491-619 (786)
243 COG1618 Predicted nucleotide k 95.8 0.0094 2E-07 58.2 4.0 40 219-258 6-47 (179)
244 cd01120 RecA-like_NTPases RecA 95.8 0.013 2.9E-07 59.4 5.5 34 220-253 1-34 (165)
245 TIGR02902 spore_lonB ATP-depen 95.7 0.078 1.7E-06 64.7 12.6 46 194-241 64-109 (531)
246 PRK08939 primosomal protein Dn 95.7 0.024 5.1E-07 63.9 7.6 35 218-252 156-190 (306)
247 TIGR02639 ClpA ATP-dependent C 95.7 0.065 1.4E-06 68.3 12.4 49 195-243 454-509 (731)
248 KOG2123 Uncharacterized conser 95.7 0.00049 1.1E-08 72.4 -5.4 86 820-911 18-105 (388)
249 PRK06696 uridine kinase; Valid 95.7 0.013 2.8E-07 63.2 5.2 46 200-245 3-49 (223)
250 PRK08118 topology modulation p 95.7 0.0076 1.6E-07 61.6 3.1 32 220-251 3-37 (167)
251 KOG0728 26S proteasome regulat 95.7 0.17 3.7E-06 52.8 12.7 165 197-384 148-349 (404)
252 PF00158 Sigma54_activat: Sigm 95.7 0.031 6.7E-07 57.1 7.4 45 197-241 1-45 (168)
253 TIGR03345 VI_ClpV1 type VI sec 95.6 0.036 7.9E-07 71.2 9.6 51 195-245 566-623 (852)
254 PRK07667 uridine kinase; Provi 95.6 0.022 4.7E-07 59.9 6.2 40 205-244 4-43 (193)
255 PF03215 Rad17: Rad17 cell cyc 95.6 0.091 2E-06 63.3 12.2 56 195-252 19-77 (519)
256 PRK15115 response regulator Gl 95.6 2.2 4.7E-05 51.4 24.3 47 195-241 134-180 (444)
257 KOG2739 Leucine-rich acidic nu 95.6 0.0043 9.4E-08 65.6 0.8 43 770-812 61-105 (260)
258 KOG0733 Nuclear AAA ATPase (VC 95.6 0.081 1.8E-06 62.2 10.9 143 219-382 546-710 (802)
259 TIGR01817 nifA Nif-specific re 95.5 0.3 6.6E-06 60.1 17.0 50 193-242 194-243 (534)
260 COG0470 HolB ATPase involved i 95.5 0.082 1.8E-06 60.7 11.4 144 196-355 2-170 (325)
261 PF04665 Pox_A32: Poxvirus A32 95.5 0.015 3.3E-07 62.2 4.6 33 220-252 15-47 (241)
262 COG2607 Predicted ATPase (AAA+ 95.4 0.18 4E-06 52.8 11.9 117 193-335 58-182 (287)
263 TIGR03346 chaperone_ClpB ATP-d 95.4 0.052 1.1E-06 70.3 9.8 51 195-245 565-622 (852)
264 PRK10416 signal recognition pa 95.4 0.06 1.3E-06 61.0 9.1 29 217-245 113-141 (318)
265 COG1484 DnaC DNA replication p 95.3 0.012 2.6E-07 64.4 3.4 36 217-252 104-139 (254)
266 PF10443 RNA12: RNA12 protein; 95.3 2.5 5.5E-05 48.9 21.8 105 298-403 148-283 (431)
267 PRK04296 thymidine kinase; Pro 95.3 0.02 4.2E-07 60.0 4.8 109 219-337 3-117 (190)
268 PF05621 TniB: Bacterial TniB 95.3 0.26 5.6E-06 54.3 13.4 197 196-397 35-260 (302)
269 PF13604 AAA_30: AAA domain; P 95.3 0.053 1.1E-06 57.1 8.0 125 204-339 7-134 (196)
270 CHL00095 clpC Clp protease ATP 95.1 0.078 1.7E-06 68.5 10.4 50 195-244 509-565 (821)
271 TIGR01425 SRP54_euk signal rec 95.1 0.13 2.9E-06 60.0 11.0 29 217-245 99-127 (429)
272 PF14532 Sigma54_activ_2: Sigm 95.1 0.013 2.9E-07 57.9 2.4 45 198-242 1-45 (138)
273 KOG0743 AAA+-type ATPase [Post 95.0 0.38 8.2E-06 55.3 14.0 149 219-402 236-413 (457)
274 PRK15455 PrkA family serine pr 95.0 0.024 5.3E-07 67.2 4.8 49 195-243 76-128 (644)
275 KOG0741 AAA+-type ATPase [Post 95.0 0.14 3.1E-06 59.1 10.5 123 217-365 537-685 (744)
276 PRK11608 pspF phage shock prot 95.0 0.072 1.6E-06 60.9 8.5 46 195-240 6-51 (326)
277 PF13238 AAA_18: AAA domain; P 95.0 0.019 4E-07 55.8 3.2 22 221-242 1-22 (129)
278 PRK05541 adenylylsulfate kinas 95.0 0.026 5.7E-07 58.4 4.4 35 218-252 7-41 (176)
279 PRK10867 signal recognition pa 94.9 0.24 5.2E-06 58.3 12.7 29 217-245 99-127 (433)
280 KOG0652 26S proteasome regulat 94.9 0.42 9E-06 50.3 12.7 187 195-402 171-391 (424)
281 PF07726 AAA_3: ATPase family 94.9 0.019 4.1E-07 54.6 2.7 28 221-248 2-29 (131)
282 PF00485 PRK: Phosphoribulokin 94.8 0.024 5.2E-07 59.7 3.7 26 220-245 1-26 (194)
283 PRK07261 topology modulation p 94.8 0.02 4.2E-07 58.9 2.9 23 220-242 2-24 (171)
284 TIGR00959 ffh signal recogniti 94.7 0.27 5.9E-06 57.8 12.4 26 218-243 99-124 (428)
285 KOG1514 Origin recognition com 94.7 0.59 1.3E-05 56.4 14.9 196 193-398 394-621 (767)
286 KOG0727 26S proteasome regulat 94.7 0.16 3.5E-06 53.0 9.0 154 196-370 156-343 (408)
287 PF01583 APS_kinase: Adenylyls 94.6 0.042 9E-07 54.8 4.6 34 219-252 3-36 (156)
288 KOG0651 26S proteasome regulat 94.6 0.12 2.7E-06 55.9 8.3 29 218-246 166-194 (388)
289 cd01131 PilT Pilus retraction 94.5 0.087 1.9E-06 55.6 7.0 110 219-339 2-112 (198)
290 TIGR02974 phageshock_pspF psp 94.4 0.12 2.6E-06 59.0 8.5 45 197-241 1-45 (329)
291 KOG0729 26S proteasome regulat 94.4 0.19 4.1E-06 52.9 8.8 35 217-256 210-244 (435)
292 PRK12337 2-phosphoglycerate ki 94.4 0.039 8.5E-07 64.2 4.3 27 217-243 254-280 (475)
293 PRK13531 regulatory ATPase Rav 94.4 0.074 1.6E-06 62.5 6.6 45 195-243 20-64 (498)
294 cd02019 NK Nucleoside/nucleoti 94.3 0.034 7.4E-07 47.4 2.7 23 220-242 1-23 (69)
295 PF08433 KTI12: Chromatin asso 94.3 0.067 1.5E-06 59.0 5.7 26 219-244 2-27 (270)
296 PRK11034 clpA ATP-dependent Cl 94.3 0.15 3.2E-06 64.4 9.5 49 195-243 458-513 (758)
297 PRK03839 putative kinase; Prov 94.3 0.033 7.2E-07 57.8 3.2 24 220-243 2-25 (180)
298 PRK07132 DNA polymerase III su 94.2 2.7 5.8E-05 47.2 18.4 165 205-397 6-184 (299)
299 KOG2004 Mitochondrial ATP-depe 94.2 0.046 1E-06 65.3 4.5 52 195-246 411-466 (906)
300 PRK10820 DNA-binding transcrip 94.2 1.2 2.6E-05 54.5 17.0 49 193-241 202-250 (520)
301 COG0572 Udk Uridine kinase [Nu 94.1 0.053 1.2E-06 56.7 4.3 30 216-245 6-35 (218)
302 PRK08233 hypothetical protein; 94.1 0.036 7.8E-07 57.6 3.2 26 218-243 3-28 (182)
303 PTZ00301 uridine kinase; Provi 94.1 0.041 8.8E-07 58.3 3.6 29 218-246 3-31 (210)
304 KOG0739 AAA+-type ATPase [Post 94.1 0.45 9.7E-06 51.2 11.1 153 195-369 133-315 (439)
305 PRK00625 shikimate kinase; Pro 94.1 0.037 8E-07 56.8 3.1 24 220-243 2-25 (173)
306 PRK04040 adenylate kinase; Pro 94.1 0.047 1E-06 56.9 3.9 25 219-243 3-27 (188)
307 PRK15429 formate hydrogenlyase 94.1 0.13 2.9E-06 65.3 8.7 49 194-242 375-423 (686)
308 cd01121 Sms Sms (bacterial rad 94.1 0.08 1.7E-06 61.2 6.0 49 205-253 69-117 (372)
309 COG0488 Uup ATPase components 94.0 0.44 9.5E-06 57.7 12.4 53 294-352 453-511 (530)
310 KOG2228 Origin recognition com 94.0 0.41 8.9E-06 52.7 10.8 180 181-365 14-218 (408)
311 PRK05480 uridine/cytidine kina 94.0 0.046 9.9E-07 58.3 3.7 26 217-242 5-30 (209)
312 COG0464 SpoVK ATPases of the A 94.0 0.23 4.9E-06 60.7 10.2 151 196-368 243-425 (494)
313 PF00910 RNA_helicase: RNA hel 94.0 0.032 7E-07 52.3 2.2 26 221-246 1-26 (107)
314 PRK06762 hypothetical protein; 94.0 0.045 9.7E-07 56.0 3.4 24 219-242 3-26 (166)
315 COG4088 Predicted nucleotide k 93.9 0.067 1.4E-06 54.5 4.4 31 219-249 2-32 (261)
316 PF13671 AAA_33: AAA domain; P 93.9 0.047 1E-06 54.1 3.3 24 220-243 1-24 (143)
317 TIGR00235 udk uridine kinase. 93.9 0.055 1.2E-06 57.6 4.1 28 216-243 4-31 (207)
318 PF10137 TIR-like: Predicted n 93.9 0.15 3.2E-06 48.9 6.4 60 21-83 1-61 (125)
319 cd01394 radB RadB. The archaea 93.9 0.11 2.3E-06 55.9 6.3 49 205-253 6-54 (218)
320 PRK09270 nucleoside triphospha 93.9 0.071 1.5E-06 57.7 5.0 31 215-245 30-60 (229)
321 PRK05973 replicative DNA helic 93.8 0.21 4.6E-06 53.7 8.3 36 218-253 64-99 (237)
322 cd01858 NGP_1 NGP-1. Autoanti 93.8 0.59 1.3E-05 47.2 11.3 22 219-240 103-124 (157)
323 PRK09361 radB DNA repair and r 93.8 0.1 2.3E-06 56.3 6.1 50 205-254 10-59 (225)
324 TIGR02237 recomb_radB DNA repa 93.8 0.085 1.8E-06 56.3 5.3 45 210-254 4-48 (209)
325 PRK05703 flhF flagellar biosyn 93.6 0.32 6.8E-06 57.6 10.1 35 218-252 221-257 (424)
326 cd01129 PulE-GspE PulE/GspE Th 93.6 0.19 4.1E-06 55.6 7.7 101 203-317 68-168 (264)
327 TIGR00150 HI0065_YjeE ATPase, 93.6 0.086 1.9E-06 51.1 4.4 24 219-242 23-46 (133)
328 PRK11388 DNA-binding transcrip 93.6 0.75 1.6E-05 58.1 14.1 48 194-241 324-371 (638)
329 PRK10923 glnG nitrogen regulat 93.6 1.4 2.9E-05 53.6 15.9 47 195-241 138-184 (469)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.24 5.2E-06 49.3 7.7 33 219-252 27-59 (144)
331 PHA00729 NTP-binding motif con 93.5 0.07 1.5E-06 56.5 3.9 27 217-243 16-42 (226)
332 KOG1969 DNA replication checkp 93.5 0.12 2.7E-06 62.1 6.2 77 216-311 324-400 (877)
333 TIGR01360 aden_kin_iso1 adenyl 93.5 0.057 1.2E-06 56.4 3.3 26 217-242 2-27 (188)
334 PRK00131 aroK shikimate kinase 93.5 0.057 1.2E-06 55.6 3.2 25 219-243 5-29 (175)
335 PRK12723 flagellar biosynthesi 93.5 0.28 6.1E-06 56.9 9.1 27 217-243 173-199 (388)
336 COG1428 Deoxynucleoside kinase 93.5 0.057 1.2E-06 55.7 3.0 26 218-243 4-29 (216)
337 PRK12724 flagellar biosynthesi 93.4 0.35 7.6E-06 56.1 9.7 25 218-242 223-247 (432)
338 PRK13947 shikimate kinase; Pro 93.4 0.057 1.2E-06 55.5 3.0 26 220-245 3-28 (171)
339 COG0542 clpA ATP-binding subun 93.4 0.091 2E-06 65.1 5.1 151 194-365 169-345 (786)
340 cd03247 ABCC_cytochrome_bd The 93.4 0.3 6.5E-06 50.6 8.4 33 219-252 29-61 (178)
341 KOG2123 Uncharacterized conser 93.3 0.004 8.8E-08 65.7 -5.6 37 592-628 42-78 (388)
342 PF03308 ArgK: ArgK protein; 93.3 0.2 4.3E-06 53.8 6.8 41 205-245 16-56 (266)
343 TIGR03596 GTPase_YlqF ribosome 93.2 0.94 2E-05 50.5 12.5 23 218-240 118-140 (276)
344 PRK06547 hypothetical protein; 93.1 0.084 1.8E-06 54.1 3.7 27 216-242 13-39 (172)
345 cd00561 CobA_CobO_BtuR ATP:cor 93.0 0.47 1E-05 47.6 8.7 116 219-336 3-138 (159)
346 KOG0737 AAA+-type ATPase [Post 93.0 0.57 1.2E-05 52.4 10.0 54 195-248 92-157 (386)
347 PF00560 LRR_1: Leucine Rich R 93.0 0.039 8.5E-07 35.1 0.7 18 873-890 2-19 (22)
348 COG1224 TIP49 DNA helicase TIP 92.9 0.19 4.1E-06 55.6 6.1 58 192-249 36-96 (450)
349 cd03216 ABC_Carb_Monos_I This 92.9 0.19 4.2E-06 51.2 6.0 34 219-253 27-60 (163)
350 cd00227 CPT Chloramphenicol (C 92.9 0.082 1.8E-06 54.6 3.3 26 219-244 3-28 (175)
351 cd02028 UMPK_like Uridine mono 92.9 0.11 2.4E-06 53.8 4.2 25 220-244 1-25 (179)
352 TIGR02858 spore_III_AA stage I 92.8 0.5 1.1E-05 52.1 9.5 113 217-339 110-232 (270)
353 cd03246 ABCC_Protease_Secretio 92.8 0.22 4.9E-06 51.2 6.3 121 219-351 29-169 (173)
354 TIGR01359 UMP_CMP_kin_fam UMP- 92.7 0.072 1.6E-06 55.4 2.6 23 220-242 1-23 (183)
355 PRK00889 adenylylsulfate kinas 92.7 0.14 3.1E-06 52.8 4.8 27 218-244 4-30 (175)
356 cd03228 ABCC_MRP_Like The MRP 92.6 0.29 6.3E-06 50.3 7.0 124 219-351 29-168 (171)
357 PRK14722 flhF flagellar biosyn 92.6 0.32 7E-06 56.0 7.8 29 218-246 137-165 (374)
358 cd03223 ABCD_peroxisomal_ALDP 92.6 0.38 8.3E-06 49.1 7.7 24 219-242 28-51 (166)
359 TIGR00390 hslU ATP-dependent p 92.6 0.14 3E-06 59.0 4.8 52 195-246 12-75 (441)
360 PRK13949 shikimate kinase; Pro 92.6 0.091 2E-06 53.8 3.1 24 220-243 3-26 (169)
361 PRK09280 F0F1 ATP synthase sub 92.5 0.24 5.2E-06 58.3 6.8 52 219-273 145-196 (463)
362 PF03205 MobB: Molybdopterin g 92.5 0.17 3.6E-06 50.0 4.7 34 219-252 1-35 (140)
363 cd02024 NRK1 Nicotinamide ribo 92.5 0.079 1.7E-06 54.9 2.5 23 220-242 1-23 (187)
364 PRK03846 adenylylsulfate kinas 92.5 0.16 3.5E-06 53.6 4.9 36 217-252 23-58 (198)
365 PF00448 SRP54: SRP54-type pro 92.4 0.15 3.3E-06 53.4 4.6 34 219-252 2-35 (196)
366 KOG2035 Replication factor C, 92.4 3.6 7.9E-05 44.3 14.5 227 195-436 13-282 (351)
367 cd02020 CMPK Cytidine monophos 92.4 0.089 1.9E-06 52.4 2.8 24 220-243 1-24 (147)
368 cd03115 SRP The signal recogni 92.4 0.25 5.3E-06 50.9 6.1 26 220-245 2-27 (173)
369 cd02025 PanK Pantothenate kina 92.4 0.084 1.8E-06 56.6 2.6 24 220-243 1-24 (220)
370 COG4608 AppF ABC-type oligopep 92.4 0.21 4.5E-06 53.9 5.5 121 218-342 39-176 (268)
371 PF06068 TIP49: TIP49 C-termin 92.4 0.21 4.5E-06 56.2 5.7 59 193-251 22-83 (398)
372 COG0703 AroK Shikimate kinase 92.4 0.1 2.2E-06 52.6 3.0 28 219-246 3-30 (172)
373 COG0465 HflB ATP-dependent Zn 92.3 0.68 1.5E-05 56.0 10.3 153 193-369 148-336 (596)
374 PHA02244 ATPase-like protein 92.3 0.26 5.6E-06 56.0 6.5 47 195-245 96-146 (383)
375 KOG1970 Checkpoint RAD17-RFC c 92.3 0.25 5.4E-06 57.8 6.4 43 200-242 87-134 (634)
376 PF13306 LRR_5: Leucine rich r 92.3 0.42 9.2E-06 46.2 7.4 18 552-569 3-20 (129)
377 PRK11823 DNA repair protein Ra 92.3 0.22 4.8E-06 59.4 6.3 50 204-253 66-115 (446)
378 KOG0736 Peroxisome assembly fa 92.3 1.2 2.6E-05 54.4 12.0 52 195-246 672-733 (953)
379 TIGR03878 thermo_KaiC_2 KaiC d 92.3 0.17 3.8E-06 55.7 5.0 38 216-253 34-71 (259)
380 PRK05439 pantothenate kinase; 92.3 0.19 4E-06 56.4 5.2 29 216-244 84-112 (311)
381 PRK06217 hypothetical protein; 92.2 0.094 2E-06 54.6 2.8 24 220-243 3-26 (183)
382 cd02023 UMPK Uridine monophosp 92.2 0.087 1.9E-06 55.7 2.5 23 220-242 1-23 (198)
383 COG5635 Predicted NTPase (NACH 92.2 0.74 1.6E-05 59.7 11.4 228 219-450 223-482 (824)
384 PRK12597 F0F1 ATP synthase sub 92.2 0.26 5.7E-06 58.2 6.6 51 219-273 144-195 (461)
385 COG0467 RAD55 RecA-superfamily 92.2 0.36 7.8E-06 53.4 7.4 46 208-253 13-58 (260)
386 TIGR03877 thermo_KaiC_1 KaiC d 92.2 0.39 8.4E-06 52.3 7.6 49 205-253 8-56 (237)
387 COG1936 Predicted nucleotide k 92.1 0.1 2.2E-06 52.0 2.7 20 220-239 2-21 (180)
388 cd00464 SK Shikimate kinase (S 92.1 0.11 2.4E-06 52.2 3.0 23 221-243 2-24 (154)
389 PRK05201 hslU ATP-dependent pr 92.1 0.18 4E-06 58.1 5.0 52 195-246 15-78 (443)
390 PRK13948 shikimate kinase; Pro 92.1 0.11 2.4E-06 53.8 2.9 29 217-245 9-37 (182)
391 TIGR02322 phosphon_PhnN phosph 92.1 0.11 2.4E-06 53.8 3.1 25 219-243 2-26 (179)
392 PRK13946 shikimate kinase; Pro 92.0 0.11 2.3E-06 54.2 2.9 25 219-243 11-35 (184)
393 COG1102 Cmk Cytidylate kinase 92.0 0.12 2.5E-06 50.9 2.8 25 220-244 2-26 (179)
394 cd01393 recA_like RecA is a b 92.0 0.23 5E-06 53.6 5.6 50 205-254 6-61 (226)
395 PRK06995 flhF flagellar biosyn 92.0 0.8 1.7E-05 54.5 10.4 26 218-243 256-281 (484)
396 cd02021 GntK Gluconate kinase 92.0 0.1 2.2E-06 52.3 2.5 23 220-242 1-23 (150)
397 cd00071 GMPK Guanosine monopho 91.9 0.098 2.1E-06 51.5 2.3 27 220-246 1-27 (137)
398 PRK12678 transcription termina 91.8 0.28 6.1E-06 58.3 6.2 91 219-312 417-517 (672)
399 TIGR01039 atpD ATP synthase, F 91.8 0.35 7.6E-06 56.7 7.0 52 219-273 144-195 (461)
400 PF03266 NTPase_1: NTPase; In 91.8 0.12 2.7E-06 52.6 2.9 24 221-244 2-25 (168)
401 COG1121 ZnuC ABC-type Mn/Zn tr 91.7 0.56 1.2E-05 50.6 7.9 54 294-350 153-212 (254)
402 cd00267 ABC_ATPase ABC (ATP-bi 91.7 0.27 5.9E-06 49.6 5.4 123 219-351 26-154 (157)
403 PRK10751 molybdopterin-guanine 91.7 0.19 4.1E-06 51.2 4.1 28 217-244 5-32 (173)
404 COG0714 MoxR-like ATPases [Gen 91.7 0.21 4.5E-06 57.5 5.0 49 195-247 24-72 (329)
405 PRK05057 aroK shikimate kinase 91.7 0.13 2.8E-06 52.9 2.9 25 219-243 5-29 (172)
406 PRK12727 flagellar biosynthesi 91.7 0.77 1.7E-05 54.8 9.6 48 198-245 326-377 (559)
407 PRK13975 thymidylate kinase; P 91.7 0.15 3.2E-06 53.8 3.4 26 219-244 3-28 (196)
408 COG1703 ArgK Putative periplas 91.6 0.31 6.8E-06 53.0 5.7 43 205-247 38-80 (323)
409 COG1066 Sms Predicted ATP-depe 91.5 0.35 7.5E-06 54.9 6.2 48 204-252 79-126 (456)
410 KOG0738 AAA+-type ATPase [Post 91.5 0.38 8.3E-06 53.8 6.4 75 169-246 189-273 (491)
411 COG0563 Adk Adenylate kinase a 91.5 0.14 3E-06 52.8 2.9 23 220-242 2-24 (178)
412 cd01123 Rad51_DMC1_radA Rad51_ 91.5 0.26 5.6E-06 53.6 5.3 48 206-253 7-60 (235)
413 PRK14530 adenylate kinase; Pro 91.4 0.14 3.1E-06 54.8 3.1 23 220-242 5-27 (215)
414 PRK12339 2-phosphoglycerate ki 91.4 0.16 3.4E-06 53.3 3.3 25 218-242 3-27 (197)
415 PRK10463 hydrogenase nickel in 91.4 0.31 6.8E-06 53.8 5.7 44 205-250 93-136 (290)
416 TIGR03881 KaiC_arch_4 KaiC dom 91.4 0.34 7.4E-06 52.5 6.1 49 205-253 7-55 (229)
417 cd01135 V_A-ATPase_B V/A-type 91.4 0.4 8.7E-06 52.4 6.5 51 219-273 70-124 (276)
418 COG1875 NYN ribonuclease and A 91.4 0.49 1.1E-05 52.7 7.1 39 199-239 228-266 (436)
419 PF13306 LRR_5: Leucine rich r 91.4 0.61 1.3E-05 45.1 7.3 32 869-902 79-111 (129)
420 PF12775 AAA_7: P-loop contain 91.3 0.38 8.2E-06 53.4 6.4 24 219-242 34-57 (272)
421 KOG0726 26S proteasome regulat 91.3 0.22 4.8E-06 53.2 4.2 54 194-247 184-248 (440)
422 cd01125 repA Hexameric Replica 91.3 1.2 2.5E-05 48.7 10.2 24 220-243 3-26 (239)
423 COG0541 Ffh Signal recognition 91.3 4.8 0.0001 46.5 14.9 40 205-244 80-126 (451)
424 PF10236 DAP3: Mitochondrial r 91.2 4.6 0.0001 45.7 15.0 49 347-395 258-306 (309)
425 PF00625 Guanylate_kin: Guanyl 91.1 0.17 3.6E-06 52.7 3.1 34 218-251 2-35 (183)
426 KOG1532 GTPase XAB1, interacts 91.1 0.18 3.9E-06 53.6 3.2 41 216-257 17-57 (366)
427 TIGR03600 phage_DnaB phage rep 91.1 2.4 5.1E-05 50.6 13.3 71 197-275 174-245 (421)
428 TIGR03574 selen_PSTK L-seryl-t 91.1 0.2 4.2E-06 55.1 3.8 26 220-245 1-26 (249)
429 PLN02318 phosphoribulokinase/u 91.1 0.22 4.9E-06 59.6 4.4 29 214-242 61-89 (656)
430 COG3640 CooC CO dehydrogenase 91.0 0.29 6.2E-06 51.4 4.6 37 220-256 2-38 (255)
431 PRK09435 membrane ATPase/prote 91.0 0.44 9.6E-06 54.1 6.6 30 216-245 54-83 (332)
432 KOG3347 Predicted nucleotide k 91.0 0.17 3.6E-06 48.9 2.7 24 219-242 8-31 (176)
433 PRK12726 flagellar biosynthesi 91.0 0.91 2E-05 51.9 8.9 36 217-252 205-240 (407)
434 PF00006 ATP-synt_ab: ATP synt 91.0 0.25 5.3E-06 52.5 4.3 25 219-243 16-40 (215)
435 cd01857 HSR1_MMR1 HSR1/MMR1. 91.0 1.6 3.5E-05 43.1 10.0 51 64-118 3-53 (141)
436 PF00437 T2SE: Type II/IV secr 91.0 0.14 3.1E-06 57.0 2.6 127 195-335 104-231 (270)
437 cd03281 ABC_MSH5_euk MutS5 hom 91.0 0.23 4.9E-06 53.1 4.0 23 218-240 29-51 (213)
438 TIGR01420 pilT_fam pilus retra 91.0 0.34 7.4E-06 55.8 5.8 107 219-336 123-230 (343)
439 PRK03731 aroL shikimate kinase 91.0 0.17 3.7E-06 52.0 3.0 24 220-243 4-27 (171)
440 cd01130 VirB11-like_ATPase Typ 90.9 0.15 3.3E-06 53.1 2.7 25 219-243 26-50 (186)
441 PRK13768 GTPase; Provisional 90.9 0.28 6.1E-06 53.9 4.8 27 219-245 3-29 (253)
442 TIGR00554 panK_bact pantothena 90.9 0.33 7.2E-06 54.0 5.4 28 216-243 60-87 (290)
443 PRK09563 rbgA GTPase YlqF; Rev 90.9 2.4 5.2E-05 47.6 12.4 23 218-240 121-143 (287)
444 COG0003 ArsA Predicted ATPase 90.9 0.28 6.1E-06 55.3 4.8 35 218-252 2-36 (322)
445 TIGR01650 PD_CobS cobaltochela 90.9 0.43 9.3E-06 53.6 6.2 49 194-246 44-92 (327)
446 PRK14738 gmk guanylate kinase; 90.9 0.2 4.3E-06 53.3 3.5 29 213-241 8-36 (206)
447 PRK06067 flagellar accessory p 90.9 0.56 1.2E-05 50.9 7.2 49 205-253 12-60 (234)
448 TIGR01313 therm_gnt_kin carboh 90.9 0.14 3E-06 52.1 2.3 22 221-242 1-22 (163)
449 PRK15453 phosphoribulokinase; 90.8 0.31 6.7E-06 53.3 4.9 27 217-243 4-30 (290)
450 PRK05342 clpX ATP-dependent pr 90.8 0.29 6.3E-06 57.5 5.1 28 219-246 109-136 (412)
451 TIGR02012 tigrfam_recA protein 90.8 0.37 8.1E-06 54.3 5.7 49 205-253 41-90 (321)
452 TIGR03263 guanyl_kin guanylate 90.8 0.15 3.3E-06 52.8 2.5 24 219-242 2-25 (180)
453 TIGR00073 hypB hydrogenase acc 90.7 0.3 6.4E-06 52.0 4.7 29 216-244 20-48 (207)
454 PRK14493 putative bifunctional 90.7 0.29 6.2E-06 54.2 4.6 34 219-253 2-35 (274)
455 TIGR00176 mobB molybdopterin-g 90.7 0.26 5.5E-06 49.7 3.9 26 220-245 1-26 (155)
456 PRK05537 bifunctional sulfate 90.7 0.36 7.7E-06 59.3 5.9 50 195-244 369-418 (568)
457 PRK04182 cytidylate kinase; Pr 90.7 0.19 4.1E-06 52.0 3.1 24 220-243 2-25 (180)
458 cd02027 APSK Adenosine 5'-phos 90.6 0.26 5.7E-06 49.3 3.9 24 220-243 1-24 (149)
459 COG2019 AdkA Archaeal adenylat 90.4 0.24 5.3E-06 48.9 3.3 25 218-242 4-28 (189)
460 PRK08154 anaerobic benzoate ca 90.4 0.3 6.4E-06 55.5 4.6 27 217-243 132-158 (309)
461 cd01983 Fer4_NifH The Fer4_Nif 90.4 0.2 4.4E-06 45.5 2.7 25 220-244 1-25 (99)
462 PF13504 LRR_7: Leucine rich r 90.4 0.15 3.4E-06 30.1 1.2 7 852-858 5-11 (17)
463 COG0194 Gmk Guanylate kinase [ 90.3 0.25 5.4E-06 50.1 3.4 24 219-242 5-28 (191)
464 PF00560 LRR_1: Leucine Rich R 90.3 0.16 3.4E-06 32.3 1.3 19 729-747 2-20 (22)
465 PF07725 LRR_3: Leucine Rich R 90.3 0.16 3.6E-06 31.2 1.2 20 614-633 1-20 (20)
466 COG1124 DppF ABC-type dipeptid 90.3 0.2 4.4E-06 52.9 2.8 22 219-240 34-55 (252)
467 cd01124 KaiC KaiC is a circadi 90.2 0.3 6.4E-06 50.9 4.1 33 221-253 2-34 (187)
468 PRK14723 flhF flagellar biosyn 90.2 0.8 1.7E-05 57.3 8.3 26 218-243 185-210 (767)
469 PF08298 AAA_PrkA: PrkA AAA do 90.2 0.33 7.2E-06 54.6 4.6 55 191-245 57-115 (358)
470 TIGR03305 alt_F1F0_F1_bet alte 90.2 0.53 1.2E-05 55.3 6.5 38 219-257 139-177 (449)
471 PLN02200 adenylate kinase fami 90.2 0.24 5.2E-06 53.6 3.4 26 217-242 42-67 (234)
472 PF13521 AAA_28: AAA domain; P 90.2 0.23 5E-06 50.6 3.1 21 221-241 2-22 (163)
473 TIGR00764 lon_rel lon-related 90.1 0.41 8.8E-06 59.4 5.8 57 195-255 18-75 (608)
474 PRK00300 gmk guanylate kinase; 90.1 0.2 4.4E-06 53.1 2.8 25 218-242 5-29 (205)
475 KOG4308 LRR-containing protein 90.1 0.0028 6.1E-08 75.5 -12.6 131 775-905 145-301 (478)
476 TIGR02782 TrbB_P P-type conjug 90.0 0.69 1.5E-05 52.0 7.1 90 219-318 133-224 (299)
477 cd00983 recA RecA is a bacter 90.0 0.49 1.1E-05 53.4 5.8 49 205-253 41-90 (325)
478 PRK10078 ribose 1,5-bisphospho 90.0 0.19 4.1E-06 52.5 2.4 24 219-242 3-26 (186)
479 TIGR02768 TraA_Ti Ti-type conj 90.0 1.6 3.5E-05 55.7 11.1 26 219-244 369-394 (744)
480 COG2884 FtsE Predicted ATPase 90.0 0.89 1.9E-05 46.2 6.8 48 294-343 151-204 (223)
481 PRK06761 hypothetical protein; 89.9 0.31 6.7E-06 53.8 4.0 27 219-245 4-30 (282)
482 KOG0740 AAA+-type ATPase [Post 89.9 5.2 0.00011 46.6 13.9 30 217-246 185-214 (428)
483 TIGR00416 sms DNA repair prote 89.9 0.51 1.1E-05 56.3 6.2 51 203-253 79-129 (454)
484 PF06309 Torsin: Torsin; Inte 89.8 0.49 1.1E-05 45.1 4.7 39 203-241 37-76 (127)
485 cd03116 MobB Molybdenum is an 89.8 0.42 9E-06 48.3 4.6 27 219-245 2-28 (159)
486 PF13086 AAA_11: AAA domain; P 89.8 0.64 1.4E-05 50.2 6.5 37 202-242 5-41 (236)
487 KOG0730 AAA+-type ATPase [Post 89.7 1.2 2.5E-05 53.7 8.7 166 196-383 185-381 (693)
488 PRK08533 flagellar accessory p 89.7 0.33 7.2E-06 52.5 4.1 38 216-253 22-59 (230)
489 PLN02348 phosphoribulokinase 89.7 0.31 6.6E-06 56.0 3.9 29 216-244 47-75 (395)
490 PRK04220 2-phosphoglycerate ki 89.7 1 2.2E-05 50.1 7.8 25 218-242 92-116 (301)
491 cd02034 CooC The accessory pro 89.7 0.44 9.6E-06 45.3 4.4 25 221-245 2-26 (116)
492 TIGR00708 cobA cob(I)alamin ad 89.7 2 4.3E-05 43.7 9.3 27 219-245 6-32 (173)
493 TIGR02173 cyt_kin_arch cytidyl 89.7 0.26 5.5E-06 50.6 3.0 23 220-242 2-24 (171)
494 PRK14527 adenylate kinase; Pro 89.7 0.26 5.6E-06 51.7 3.1 25 218-242 6-30 (191)
495 PRK05917 DNA polymerase III su 89.6 5 0.00011 44.6 13.1 131 205-353 7-154 (290)
496 PF08477 Miro: Miro-like prote 89.6 0.26 5.6E-06 46.9 2.9 21 221-241 2-22 (119)
497 PRK04328 hypothetical protein; 89.6 0.54 1.2E-05 51.5 5.7 48 206-253 11-58 (249)
498 COG0055 AtpD F0F1-type ATP syn 89.5 0.52 1.1E-05 52.5 5.3 42 219-260 148-189 (468)
499 TIGR01287 nifH nitrogenase iro 89.5 0.35 7.6E-06 54.0 4.2 27 219-245 1-27 (275)
500 COG0378 HypB Ni2+-binding GTPa 89.5 0.45 9.8E-06 48.6 4.5 38 218-255 13-50 (202)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.6e-150 Score=1469.51 Aligned_cols=1056 Identities=35% Similarity=0.570 Sum_probs=858.1
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHhhCCCcEEEeCCCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDNQLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEIV 95 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~ 95 (1187)
+.|+||||+||||+|||++|++||+++|.++||.||+|+++++|+.|.+++.+||++|+++|||||++||+|+||++||+
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~ 88 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCceEEeEEEEeccccccccccchhhHHHHHHHHhcCChHHHHHHHHHHHhcccccCccccccchhhHHH
Q 001020 96 KILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKLEERFMEWPEKLESWRIALREAANLSGFASHAIRPESLLI 175 (1187)
Q Consensus 96 ~~~~~~~~~~~~~~v~pvfy~vdp~~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~aL~~~a~~~g~~~~~~~~e~~~i 175 (1187)
+|++|++ ..+++|+||||+|||+|||+|+|+||+||++++++ ...+++++||+||++||+++||++..+++|+++|
T Consensus 89 ~i~~~~~--~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i 164 (1153)
T PLN03210 89 EIVRCKE--ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMI 164 (1153)
T ss_pred HHHHhhh--hcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCCCCHHHHH
Confidence 9999999 89999999999999999999999999999999876 4578999999999999999999998899999999
Q ss_pred HHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEec
Q 001020 176 EKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNV 255 (1187)
Q Consensus 176 ~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 255 (1187)
++||++|.+++..+++.+.+++|||+++++++.++|..+.+++++|+||||||+||||||+++|+++..+|++.+|+...
T Consensus 165 ~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 165 EEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 99999999999998888889999999999999999988888899999999999999999999999999999999998542
Q ss_pred --hhh---hc-----ccCChHHHHHHHhhccccCCCCCCccc-cchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCC
Q 001020 256 --REE---SE-----RTGGLSQLRQKLFSEDESLSVGIPNVG-LNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFT 324 (1187)
Q Consensus 256 --~~~---~~-----~~~~l~~l~~~ll~~~~~~~~~~~~~~-~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~ 324 (1187)
+.. .. .......++++++.++ +........ ......+++++|+||||||||+.++|+.+.+...|++
T Consensus 245 ~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~i--l~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~ 322 (1153)
T PLN03210 245 FISKSMEIYSSANPDDYNMKLHLQRAFLSEI--LDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFG 322 (1153)
T ss_pred ccccchhhcccccccccchhHHHHHHHHHHH--hCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCC
Confidence 111 00 0011234566666554 222222211 1223457899999999999999999999999889999
Q ss_pred CCcEEEEEeCChhhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcC
Q 001020 325 SGSRIIITTRDKQVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFG 404 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~ 404 (1187)
+|||||||||+++++..++++++|+|+.|+.+||++||+++||++..+ ++++.+++++|+++|+|+||||+++|++|++
T Consensus 323 ~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~ 401 (1153)
T PLN03210 323 SGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRG 401 (1153)
T ss_pred CCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC
Confidence 999999999999999888888999999999999999999999988766 6789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCH-HHHHHHhhhhcccCCCCHHHHHHHHHhcCCccccchHhhhccccc
Q 001020 405 RKMEDWESAANKLKKVPHLDIQKVLKASYDGLDD-EEQNIFLDIACFFKGEDKDLVVEFLDASGFSAEIGISVLVDKSLI 483 (1187)
Q Consensus 405 ~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi 483 (1187)
++.++|++++++++..++.+|..+|++||++|++ .+|.||+++||||.+.+++.+..+++.+++.++.+++.|+++|||
T Consensus 402 k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi 481 (1153)
T PLN03210 402 RDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLI 481 (1153)
T ss_pred CCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCE
Confidence 9999999999999998888999999999999976 599999999999999999999999999999999999999999999
Q ss_pred eeeCCEEEehHhhhhhhhhhhcccccCCCCCceeeeccccchhhhccccccceecccccccccccccccCccccccCccc
Q 001020 484 IILKNKIIMHDLLQGMGREIVRQESIKDPGKRSRLWNHEDIYHVLTRNKGTETIEGISLDMSKVKDINLNPQTFIKMHKL 563 (1187)
Q Consensus 484 ~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~ld~~~~~~~~~~~~~f~~m~~L 563 (1187)
++..+++.|||++|+||++++++++ .+|++|+|+|+++|+++++..++|++.+++|++|+++..++.++.++|.+|++|
T Consensus 482 ~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L 560 (1153)
T PLN03210 482 HVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNL 560 (1153)
T ss_pred EEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccc
Confidence 9999999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCC-CCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEE
Q 001020 564 RFLKFYNSVDG-EHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMD 642 (1187)
Q Consensus 564 r~L~l~~~~~~-~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 642 (1187)
++|+++++... ......+++.++..++.+||+|+|.+|+++++|..+.+.+|++|+|++|+++.+|.+++.+++|+.|+
T Consensus 561 ~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~ 640 (1153)
T PLN03210 561 LFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNID 640 (1153)
T ss_pred cEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEE
Confidence 99999875432 22334677888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcc
Q 001020 643 LSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTF 722 (1187)
Q Consensus 643 Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~ 722 (1187)
|++|..+..+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|..++.+|..+++++|+.|++++|..+..+
T Consensus 641 Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 641 LRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence 99999899999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcc------c-ccccCCCCCCCEEeccCCCCCccCCcccC
Q 001020 723 PEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLEC------L-SSSLCKLKSLQHLNLFGCTKVERLPDEFG 795 (1187)
Q Consensus 723 ~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~------l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~ 795 (1187)
|....+|+.|++++|.++.+|..+ .+++|+.|++.++..... + +.....+++|+.|+|++|..+..+|..++
T Consensus 721 p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 721 PDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred ccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 999999999999999999999876 688999999887543211 1 11122345677777777766666666666
Q ss_pred CcccccEEEcccC-cccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCc
Q 001020 796 NLEALMEMKAVRS-SIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLH 874 (1187)
Q Consensus 796 ~l~~L~~L~l~~n-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~ 874 (1187)
++++|+.|++++| .+..+|..+ .+++|+.|++++|..... +|. ..++|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~--------------------------~p~---~~~nL~ 849 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT--------------------------FPD---ISTNIS 849 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc--------------------------ccc---cccccC
Confidence 6666666666654 345555543 455555555555544322 221 123444
Q ss_pred EEECccCCCccccccccCCCCCCEEeecCCCCCCcCCCCC---CCCCeeecccccccccccCCccc---------cCCCC
Q 001020 875 ILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPELP---CNISDMDANCCTSLKELSGLSIL---------FTPTT 942 (1187)
Q Consensus 875 ~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l~---~sL~~L~i~~C~~L~~l~~~~~~---------~~~~~ 942 (1187)
.|+|++|.++.+|.++..+++|+.|+|++|++|+.+|..+ ++|+.|++.+|++|+.++..... .....
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~ 929 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL 929 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccC
Confidence 5555555555555555555555555555555555444322 23444455555555433210000 00011
Q ss_pred CCCCceeeecCCCCChHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCceEecCCCCCCCCcccccCCcEEE-EECCC
Q 001020 943 WNSQGLNFINCFNLDGDELKEIAKDAQLKIQLMATAWWNEYHKESYETPLGCISFPGSEVPDWFSFQSAGSSTI-LKLPP 1021 (1187)
Q Consensus 943 ~~l~~L~~~~C~~L~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sv~-~~lp~ 1021 (1187)
+....+.+.+|++|++.+. + +. . .....+++||.++|+||.||+.|++++ |.+|+
T Consensus 930 p~~~~l~f~nC~~L~~~a~--l--------~~-----------~---~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~ 985 (1153)
T PLN03210 930 PSTVCINFINCFNLDQEAL--L--------QQ-----------Q---SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLH 985 (1153)
T ss_pred CchhccccccccCCCchhh--h--------cc-----------c---ccceEEECCCccCchhccCCcccceeeeeccCC
Confidence 2223467899999987652 1 00 0 112357899999999999999999998 99999
Q ss_pred CCCCCCceeEEEEEEEeecCCcCCCccceEEEEEEEEeCCCceEEeeccccccCCCCCCCCcCCCCeEEEEecccccc-c
Q 001020 1022 VSFSDKFVGIALCVVVAFRDHQDVGMGLRIVYECKLKSRDDTWHVAEGSLFDWGDGYSRPRYVLSDHVFLGYDFAVLS-N 1100 (1187)
Q Consensus 1022 ~~~~~~~~gfa~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dh~~~~~~~~~~~-~ 1100 (1187)
.|++..|.||++|+|+++....+....+.+.|.|.+++..|.++......+.|-. ....+|++++....... .
T Consensus 986 ~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 1059 (1153)
T PLN03210 986 ISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSV------TKKGSHLVIFDCCFPLNED 1059 (1153)
T ss_pred cccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccccCCCceeEee------eccccceEEeccccccccc
Confidence 9998889999999999877653333467889999999887776432111111110 11345555543111110 0
Q ss_pred ccccccCCCcEEEEEEEEeecCCCCCCCcceEEEeeeEEEEecCC
Q 001020 1101 NFGEYCHHNKEAVIEFYLLNTHDFGRSDWCEIKRCAVHLLYARDF 1145 (1187)
Q Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cg~~~~~~~~~ 1145 (1187)
+-....+..+.+.|+|.+.+.. ..++||+|||+++|+.+.
T Consensus 1060 ~~~~~~~~~~~~~~~f~~~~~~-----~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1060 NAPLAELNYDHVDIQFRLTNKN-----SQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred ccchhccCCceeeEEEEEecCC-----CCeEEEeeeEEEeccCCC
Confidence 0001123457788888886611 237999999999996543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-59 Score=578.68 Aligned_cols=453 Identities=25% Similarity=0.368 Sum_probs=366.9
Q ss_pred cchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH---hhccCCceEEEEechhhhcccCChHHHHHHHhh
Q 001020 198 IGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR---ISNQFEGSYFLQNVREESERTGGLSQLRQKLFS 274 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 274 (1187)
||.+..++++.+.|..++. +++||+||||+||||||+.++++ +..+|+.++|+...++ .....++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~-----f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE-----FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc-----ccHHhHHHHHHH
Confidence 9999999999999986554 89999999999999999999993 6789999999964432 666788888887
Q ss_pred ccccCCCCCCcc----ccchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhhh-cCcceeEE
Q 001020 275 EDESLSVGIPNV----GLNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKN-CRVDGIYE 349 (1187)
Q Consensus 275 ~~~~~~~~~~~~----~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~ 349 (1187)
.+...+....+. ........|.+||+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++++..++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 653333333221 1122334789999999999999999999999999988889999999999999998 88889999
Q ss_pred ecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCC-CHHHHHHHHHHhhcC-----C--
Q 001020 350 VEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGR-KMEDWESAANKLKKV-----P-- 421 (1187)
Q Consensus 350 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~-- 421 (1187)
++.|+.+|||+||++.||.......+.+.++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 99999999999999999987655456689999999999999999999999999987 777999999988765 1
Q ss_pred CchHHHHHHHhcCCCCHHHHHHHhhhhcccCCC--CHHHHHHHHHhcCCc------------cccchHhhhccccceeeC
Q 001020 422 HLDIQKVLKASYDGLDDEEQNIFLDIACFFKGE--DKDLVVEFLDASGFS------------AEIGISVLVDKSLIIILK 487 (1187)
Q Consensus 422 ~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~g~~------------~~~~l~~L~~~sLi~~~~ 487 (1187)
.+.|..+|+.|||.|+++.|.||+|||.||+++ +++.++.+|+++||. +..++..|++++|+...+
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 356889999999999999999999999999998 567899999999964 455699999999999875
Q ss_pred -----CEEEehHhhhhhhhhhhcccccCCCCCceeeeccccchhhhccccccceecccccccccccccccCccccccCcc
Q 001020 488 -----NKIIMHDLLQGMGREIVRQESIKDPGKRSRLWNHEDIYHVLTRNKGTETIEGISLDMSKVKDINLNPQTFIKMHK 562 (1187)
Q Consensus 488 -----~~~~mHdll~~~~~~i~~~e~~~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~ld~~~~~~~~~~~~~f~~m~~ 562 (1187)
..+.|||++||||.+++++....... .+.....+...
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~------------~iv~~~~~~~~-------------------------- 515 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEEN------------QIVSDGVGLSE-------------------------- 515 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccc------------eEEECCcCccc--------------------------
Confidence 68999999999999999854311110 00000000000
Q ss_pred cceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCcCCC--ccccccc-ccccCCcc
Q 001020 563 LRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSS--VEKLWGG-AQQLVNLK 639 (1187)
Q Consensus 563 Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--i~~l~~~-~~~l~~L~ 639 (1187)
.++ .. .....|.+.+.++.+..++.....++|++|-+..|. +..++.+ |..++.|+
T Consensus 516 -------------------~~~-~~-~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 516 -------------------IPQ-VK-SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR 574 (889)
T ss_pred -------------------ccc-cc-chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceE
Confidence 000 00 013456666667777777777766678888888885 6666554 67899999
Q ss_pred EEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCcccc-ccccceeeccccC
Q 001020 640 YMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIH-LESLKQLFLSGCS 717 (1187)
Q Consensus 640 ~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~Ls~c~ 717 (1187)
+|||++|..+..+|. ++.+-+|++|+|++ +.+..+|.++++|++|.+||+..+..+..+|.... +.+|++|.+....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999997 88999999999999 66889999999999999999999888888877665 9999999887643
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=339.20 Aligned_cols=152 Identities=32% Similarity=0.514 Sum_probs=141.3
Q ss_pred CcccEEEcccccccccchHHHHHHHHhhCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHHHH
Q 001020 18 AKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEIVK 96 (1187)
Q Consensus 18 ~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~ 96 (1187)
.+|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++||+|+||++||++
T Consensus 25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~ 104 (187)
T PLN03194 25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELAL 104 (187)
T ss_pred CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHH
Confidence 6799999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCceEEeEEEEecccccccc-ccchhhHHHHHHHHhcCChHHHHHHHHHHHhcccccCccccc-cchhhHH
Q 001020 97 ILECKNDKNIGQIVVPVFYRVDPSDVRNQ-TGIFGDGFLKLEERFMEWPEKLESWRIALREAANLSGFASHA-IRPESLL 174 (1187)
Q Consensus 97 ~~~~~~~~~~~~~v~pvfy~vdp~~vr~q-~g~~~~~~~~~~~~~~~~~~~v~~wr~aL~~~a~~~g~~~~~-~~~e~~~ 174 (1187)
|++|++ +|+||||+|||+|||+| .|+ ...+++++||.||++||+++||++.. .++|+++
T Consensus 105 I~e~~~------~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~ 165 (187)
T PLN03194 105 IMESKK------RVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEV 165 (187)
T ss_pred HHHcCC------EEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHH
Confidence 999765 79999999999999997 443 23589999999999999999997753 6889999
Q ss_pred HHHHHHHHHHhhcc
Q 001020 175 IEKIVGEILKRLND 188 (1187)
Q Consensus 175 i~~i~~~i~~~l~~ 188 (1187)
|++|++.|.++|..
T Consensus 166 i~~iv~~v~k~l~~ 179 (187)
T PLN03194 166 VTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.4e-36 Score=337.17 Aligned_cols=267 Identities=30% Similarity=0.469 Sum_probs=202.3
Q ss_pred hHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH--hhccCCceEEEEechhhhcccCChHHHHHHHhhccc
Q 001020 200 VESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR--ISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDE 277 (1187)
Q Consensus 200 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~ 277 (1187)
||.++++|.+.|....++.++|+|+||||+||||||++++++ +..+|+.++|+..... ....++.+++...+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccc
Confidence 789999999999876678999999999999999999999987 8899999999865433 333555666665542
Q ss_pred cCCCCC-----CccccchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhhhcCc-ceeEEec
Q 001020 278 SLSVGI-----PNVGLNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRV-DGIYEVE 351 (1187)
Q Consensus 278 ~~~~~~-----~~~~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-~~~~~l~ 351 (1187)
...... ...........+.++++||||||||+...|+.+...++.+..|++||||||+..++...+. ...|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 221111 1111222334788899999999999999999988887777789999999999988876654 6789999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCC-CHHHHHHHHHHhhcCC------Cch
Q 001020 352 ALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGR-KMEDWESAANKLKKVP------HLD 424 (1187)
Q Consensus 352 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~ 424 (1187)
+|+.+||++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999876522134556789999999999999999999999643 6788999998766533 467
Q ss_pred HHHHHHHhcCCCCHHHHHHHhhhhcccCCC--CHHHHHHHHHhcCCccc
Q 001020 425 IQKVLKASYDGLDDEEQNIFLDIACFFKGE--DKDLVVEFLDASGFSAE 471 (1187)
Q Consensus 425 i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~g~~~~ 471 (1187)
+..++..||+.|+++.|+||++||+||.+. +++.++++|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999987 48899999999987643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.9e-31 Score=351.76 Aligned_cols=388 Identities=20% Similarity=0.247 Sum_probs=276.8
Q ss_pred CCCCCceeeeccccchhhhccccccceecccccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCcccc
Q 001020 510 KDPGKRSRLWNHEDIYHVLTRNKGTETIEGISLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYV 589 (1187)
Q Consensus 510 ~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l 589 (1187)
.+|.++.+.|...+.+...........-+...+|++.+......+.+|.++++|++|++++|.+. ...+.++...
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-----~~ip~~~~~~ 116 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-----GPIPDDIFTT 116 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-----CcCChHHhcc
Confidence 34556666776544333333222211113344555555433344778999999999999987542 1334444445
Q ss_pred CCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcc-cccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecC
Q 001020 590 FSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVE-KLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLD 667 (1187)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 667 (1187)
..+||+|++++|.+....+...+.+|++|+|++|.+. .+|..++++++|++|+|++|.+...+|. ++++++|++|+|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 6789999999998865433456789999999999987 6788889999999999999988777775 8899999999999
Q ss_pred CCCCcccccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccc---cccceEeecCcccc-cc
Q 001020 668 GCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIA---CTIEELFLDGTAIE-EL 742 (1187)
Q Consensus 668 ~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~---~~L~~L~L~~~~i~-~l 742 (1187)
+|.....+|..++++++|++|+|++|.....+|..+ ++++|++|++++|.....+|..+ .+|+.|++++|.+. .+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 988777888889999999999999988777788776 58999999999988776777543 46788899888886 57
Q ss_pred chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc-ccchhhhcCC
Q 001020 743 PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR-ELPSSIVQLN 821 (1187)
Q Consensus 743 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~ 821 (1187)
|.++.++++|+.|+|++|.....+|..+.++++|+.|++++|.....+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 888888899999999888877788888888888888888888877778888888888888888888887 6777888888
Q ss_pred CCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC-cccccCCCCCCcEEECccCCCc-cccccccCCCCCCEE
Q 001020 822 NLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE-LPNSLGQLSSLHILFRDRNNFE-RIPTSIIHLTNLFLL 899 (1187)
Q Consensus 822 ~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L 899 (1187)
+|+.|++++|...... ...+..+++|+.|++++|++.. +|..++.+++|+.|+|++|+++ .+|..+..+++|+.|
T Consensus 357 ~L~~L~Ls~n~l~~~~---p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 357 NLTVLDLSTNNLTGEI---PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCcEEECCCCeeEeeC---ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 8888888877654321 1123344455555555555442 4444445555555555555444 344444444444555
Q ss_pred eecCCC
Q 001020 900 KLSYCE 905 (1187)
Q Consensus 900 ~L~~c~ 905 (1187)
++++|.
T Consensus 434 ~Ls~N~ 439 (968)
T PLN00113 434 DISNNN 439 (968)
T ss_pred ECcCCc
Confidence 444443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.5e-29 Score=331.58 Aligned_cols=338 Identities=22% Similarity=0.230 Sum_probs=160.7
Q ss_pred CeeEEEecCCCCC-CCCCcc-cccccceEeCcCCCcc-cccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecC
Q 001020 592 ELKYFHWNGYPLK-AMPSYI-HQENLIALEMPHSSVE-KLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLD 667 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 667 (1187)
+|+.|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+.++++|++|+|++|.+...+|. +..+++|++|+|+
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 4444444444433 233333 3444444444444443 3344444444444444444444333332 4444444444444
Q ss_pred CCCCcccccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccc---cccceEeecCcccc-cc
Q 001020 668 GCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIA---CTIEELFLDGTAIE-EL 742 (1187)
Q Consensus 668 ~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~---~~L~~L~L~~~~i~-~l 742 (1187)
+|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|..+ .+|+.|++++|.+. .+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 444333444444444444444444444333333333 24444444444444333333221 23444444444443 33
Q ss_pred chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc-ccchhhhcCC
Q 001020 743 PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR-ELPSSIVQLN 821 (1187)
Q Consensus 743 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~ 821 (1187)
|.++..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 333444444444444444433344444444444444444444443344444444444444444444443 2222333344
Q ss_pred C-----------------------CCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC-cccccCCCCCCcEEE
Q 001020 822 N-----------------------LYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE-LPNSLGQLSSLHILF 877 (1187)
Q Consensus 822 ~-----------------------L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-l~~~l~~l~~L~~L~ 877 (1187)
+ |+.|++++|..... ....+.++++|+.|+|++|.+.. +|..+..+++|+.|+
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA---VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCcEEECcCceeeeecCcccccccceEEECcCCccCCc---cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 4 44444444433221 11124556666666666666653 566666677777777
Q ss_pred CccCCCc-cccccccCCCCCCEEeecCCCCCCcCCCC---CCCCCeeeccccccccccc
Q 001020 878 RDRNNFE-RIPTSIIHLTNLFLLKLSYCERLQSLPEL---PCNISDMDANCCTSLKELS 932 (1187)
Q Consensus 878 L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~ 932 (1187)
|++|.++ .+|..+..+++|+.|+|++|+....+|.. .++|+.|++++|+-...++
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 7777666 45666667777777777776665566642 3466777777776544444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=9.5e-29 Score=274.74 Aligned_cols=343 Identities=24% Similarity=0.327 Sum_probs=279.3
Q ss_pred ccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcc-cccccceEeCcCCCcc--cccc
Q 001020 554 PQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVE--KLWG 630 (1187)
Q Consensus 554 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~--~l~~ 630 (1187)
|.....|++++.|.+....+... |..+.. ..+|.+|.+.+|.+.++-... .++.|+.+.++.|+++ .+|.
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~v------PeEL~~-lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~ 97 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQV------PEELSR-LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPT 97 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhC------hHHHHH-HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCc
Confidence 44556788999998876433222 222222 236778888888887776555 7788888888888887 4688
Q ss_pred cccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCCCCccccccc-ccCCCcccEEEccCccCCcccCccc-cccc
Q 001020 631 GAQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGCSSLLEIHPS-IKYLNKLAILSLRHCKCIKSLPTSI-HLES 707 (1187)
Q Consensus 631 ~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~ 707 (1187)
.+-.|..|.+||||+|+ +++.| .+...+|+-.|+|++| ++..+|.+ +-+|..|-+|+|++|+ +..+|+.+ .+.+
T Consensus 98 diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSM 174 (1255)
T ss_pred hhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhh
Confidence 88888888999999887 45555 5888888889999885 56677765 4588888889998866 77777777 5888
Q ss_pred cceeeccccCCC----CcccccccccceEeecCcccc--ccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEec
Q 001020 708 LKQLFLSGCSNL----NTFPEIACTIEELFLDGTAIE--ELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNL 781 (1187)
Q Consensus 708 L~~L~Ls~c~~l----~~~~~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 781 (1187)
|++|+|++|+.. ..+| .+.+|+.|.++++.-+ .+|.++..+.||..++++.| .+..+|+.+.++++|+.|+|
T Consensus 175 LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheecc
Confidence 999999988743 3343 3456888889988654 89999999999999999974 67889999999999999999
Q ss_pred cCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCC-CCCCCCccEEeccCCCC
Q 001020 782 FGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPT-MSGLRILTNLNLSDCGI 860 (1187)
Q Consensus 782 ~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l 860 (1187)
++| .++.+.-..+...+|++|+++.|.++.+|..++.|+.|+.|.+.+|...- ..+|+ ++.+.+|+.+..++|++
T Consensus 253 S~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F---eGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 253 SGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF---EGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred CcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc---cCCccchhhhhhhHHHHhhcccc
Confidence 996 45666666777889999999999999999999999999999998877544 23555 88899999999999999
Q ss_pred CCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 001020 861 TELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPE 912 (1187)
Q Consensus 861 ~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~ 912 (1187)
.-+|+.++.+..|+.|.|++|++.++|+.|.-|+.|+.|++..|++|..-|.
T Consensus 329 ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999999999999999999999999986653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.3e-27 Score=259.80 Aligned_cols=352 Identities=18% Similarity=0.189 Sum_probs=229.7
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcc--cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYI--HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L 618 (1187)
.+|+++++.-.++...|.++++|+.+++.+|... ..+.+.....+|..|++.+|.+.++.+.. .++.|+.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 4677777777777777888888888877766432 22233334456777777777777766554 56777777
Q ss_pred eCcCCCccccccc-ccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCccccc-ccccCCCcccEEEccCccC
Q 001020 619 EMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIH-PSIKYLNKLAILSLRHCKC 695 (1187)
Q Consensus 619 ~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~-~~i~~L~~L~~L~L~~c~~ 695 (1187)
||+.|.|.+++.. +..-.++++|+|++|++...-.+ |.++.+|-.|.|+.|. +..+| .+|.+|++|+.|+|..|..
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 7777777777643 44556777777777776654443 7777777777777754 34444 3456677777777777653
Q ss_pred Cccc-Cccc-cccccceeeccccCCCCcccc----cccccceEeecCccccccch-hhhccCCCcEEeccCCCCCccccc
Q 001020 696 IKSL-PTSI-HLESLKQLFLSGCSNLNTFPE----IACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSS 768 (1187)
Q Consensus 696 l~~l-p~~~-~l~~L~~L~Ls~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~ 768 (1187)
+.. -..+ ++++|+.|.|..|..- .+.+ .+.+|+.|+|..|.+..+.. ++.+|+.|+.|+|++|.....-++
T Consensus 234 -rive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 234 -RIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred -eeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 222 2222 5777777777765432 2221 24467777777777776654 466777777777777776666666
Q ss_pred ccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCC
Q 001020 769 SLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGL 847 (1187)
Q Consensus 769 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l 847 (1187)
+....++|+.|+|+.|....--+..|..+..|++|+|+.|.|..+.. .+..+++|+.|+|..|...-.....-..+.++
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 66677777777777765544445567777777777777777776654 45566777777777766544433333346677
Q ss_pred CCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccc-cccccCCCCCCEEeecC
Q 001020 848 RILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERI-PTSIIHLTNLFLLKLSY 903 (1187)
Q Consensus 848 ~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~ 903 (1187)
++|+.|.|.+|++..+| ..+.++++|+.|+|.+|.|.++ |..|..+ +|+.|.++.
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 77777777777777776 4566777777777777777665 3356666 666666543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.5e-26 Score=253.07 Aligned_cols=355 Identities=22% Similarity=0.207 Sum_probs=279.8
Q ss_pred ccccccccccccCccccccCc--ccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccc-cccce
Q 001020 541 SLDMSKVKDINLNPQTFIKMH--KLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQ-ENLIA 617 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~--~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~-~~L~~ 617 (1187)
.+|.++.+.-.++...+.+.- .-++|++++|.+.... + ...+-..+|+.+.+..|.+..+|...+. .+|+.
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id-----~-~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHID-----F-EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCc-----H-HHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 444444433333333333332 3456999988653221 1 1123356899999999999999998854 56999
Q ss_pred EeCcCCCccccc-ccccccCCccEEEcCCCCCCcc-cCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccC
Q 001020 618 LEMPHSSVEKLW-GGAQQLVNLKYMDLSHSKQLTE-IPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKC 695 (1187)
Q Consensus 618 L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~ 695 (1187)
|+|.+|.|.++- +.++.++-|+.||||.|.+... .|.|..-.++++|+|++|.....--..|..+.+|.+|.|++|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr- 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR- 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-
Confidence 999999999885 4578899999999999975432 2358888999999999987666556778999999999999987
Q ss_pred CcccCcc-c-cccccceeeccccCCCCc-c--cccccccceEeecCccccccchh-hhccCCCcEEeccCCCCCcccccc
Q 001020 696 IKSLPTS-I-HLESLKQLFLSGCSNLNT-F--PEIACTIEELFLDGTAIEELPLS-IECLSRLITLNLENCSRLECLSSS 769 (1187)
Q Consensus 696 l~~lp~~-~-~l~~L~~L~Ls~c~~l~~-~--~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 769 (1187)
++.+|.. + +++.|+.|+|..|..-.. . -..+.+|+.|.|..|.|..+..+ |..+.++++|+|..|.....--.+
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 5666654 4 499999999998763221 1 13466899999999999999876 678999999999998776665667
Q ss_pred cCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCC
Q 001020 770 LCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLR 848 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 848 (1187)
+.+|++|+.|+|+.|..-..-++..+..++|+.|+|++|+|+.+++ ++..|..|++|+|+.|...... -..|.+++
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~---e~af~~ls 365 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA---EGAFVGLS 365 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH---hhHHHHhh
Confidence 8999999999999987766667788889999999999999999986 6778899999999998865532 22377899
Q ss_pred CccEEeccCCCCCC----cccccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCC
Q 001020 849 ILTNLNLSDCGITE----LPNSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~~----l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
+|++|||+.|.+.- -...+.++++|+.|.|.+|++..+|. .+.+|+.|++|+|.+|.
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 99999999999874 23445779999999999999999997 79999999999999865
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.9e-27 Score=260.03 Aligned_cols=355 Identities=23% Similarity=0.346 Sum_probs=271.2
Q ss_pred cceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcc-cccccceEeCcCCCcccccccccccCCccEE
Q 001020 563 LRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEKLWGGAQQLVNLKYM 641 (1187)
Q Consensus 563 Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 641 (1187)
.|-.++++|.+. .-.+|.+... ...+++|.++...+..+|... .+.+|++|.+.+|++.++...+..|+.||.+
T Consensus 9 VrGvDfsgNDFs----g~~FP~~v~q-Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 9 VRGVDFSGNDFS----GDRFPHDVEQ-MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred eecccccCCcCC----CCcCchhHHH-hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 344555554321 2334455444 357899999999999999877 7889999999999999988888899999999
Q ss_pred EcCCCCCCc-ccC-CCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccc--cccccceeeccccC
Q 001020 642 DLSHSKQLT-EIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI--HLESLKQLFLSGCS 717 (1187)
Q Consensus 642 ~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~ 717 (1187)
++.+|++-. .+| ++-.+..|..|+|++| .+.+.|..+.+-+++..|+|++|+ +..+|..+ ++..|-.||||+|.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch
Confidence 998886432 334 5888899999999984 588889888888999999998866 67777665 78888888888754
Q ss_pred CCCccccc---ccccceEeecCccccccc-hhhhccCCCcEEeccCCCC-CcccccccCCCCCCCEEeccCCCCCccCCc
Q 001020 718 NLNTFPEI---ACTIEELFLDGTAIEELP-LSIECLSRLITLNLENCSR-LECLSSSLCKLKSLQHLNLFGCTKVERLPD 792 (1187)
Q Consensus 718 ~l~~~~~~---~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~-l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 792 (1187)
++.+|.. +.+|+.|.|++|.+.... ..+..++.|+.|.+++.+. +..+|.++..|.+|..++++.| .+..+|+
T Consensus 162 -Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPe 239 (1255)
T KOG0444|consen 162 -LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPE 239 (1255)
T ss_pred -hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchH
Confidence 5555543 346777788877655221 1122456677777776543 3467777888888888888764 5667788
Q ss_pred ccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCC-CCCCCCccEEeccCCCCC--CcccccCC
Q 001020 793 EFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPT-MSGLRILTNLNLSDCGIT--ELPNSLGQ 869 (1187)
Q Consensus 793 ~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~--~l~~~l~~ 869 (1187)
.+.++.+|+.|+|++|.|+++.-......+|++|+++.|.... +|. +..++.|+.|.+.+|+++ .||+.++.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 8888888888888888888887777777788888888877654 444 778888999999999887 38999999
Q ss_pred CCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCC---CCCCCCeeeccccccccccc
Q 001020 870 LSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPE---LPCNISDMDANCCTSLKELS 932 (1187)
Q Consensus 870 l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~ 932 (1187)
+..|+.+..++|.+.-+|+++..+..|+.|.|++ +.|..+|+ +.+.|+.|++++.|+|.--+
T Consensus 315 L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 9999999999999999999999999999999985 67888886 57899999999999886543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3.3e-27 Score=251.70 Aligned_cols=236 Identities=25% Similarity=0.290 Sum_probs=184.3
Q ss_pred CeeEEEecCCCCCCCCCcc-cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCS 670 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 670 (1187)
.|.+|..++|.+..+|+.+ .+..++.|+.++|++.++|+.+..+.+|+.|+.++|+.....++++.+..|+.|+..+ +
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N 147 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN-N 147 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc-c
Confidence 6788888999988888877 7888999999999999999999999999999999998777777788898999888877 4
Q ss_pred CcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCccccccc---ccceEeecCccccccchhhh
Q 001020 671 SLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIAC---TIEELFLDGTAIEELPLSIE 747 (1187)
Q Consensus 671 ~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~---~L~~L~L~~~~i~~lp~~i~ 747 (1187)
.+..+|.+++++.+|..|++.+|+.....|..++++.|++|+...| .++.+|..++ .|+.|+|..|.|..+| .|.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~ 225 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFP 225 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCC
Confidence 5778888889999999999888774444444457888888887663 4666776555 4556677888888888 577
Q ss_pred ccCCCcEEeccCCCCCcccccccC-CCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEE
Q 001020 748 CLSRLITLNLENCSRLECLSSSLC-KLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRL 826 (1187)
Q Consensus 748 ~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L 826 (1187)
++..|+.|.++.| .++.+|...+ ++++|..|+|.. ++++.+|+.+.-+.+|++||+++|.|+.+|.+++++ +|+.|
T Consensus 226 gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence 7777888877764 4556665554 777888888877 456777877777788888888888888888888777 77777
Q ss_pred EccccCC
Q 001020 827 SFERYQG 833 (1187)
Q Consensus 827 ~l~~~~~ 833 (1187)
-+.+|+.
T Consensus 303 ~leGNPl 309 (565)
T KOG0472|consen 303 ALEGNPL 309 (565)
T ss_pred hhcCCch
Confidence 7777654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.8e-23 Score=271.67 Aligned_cols=331 Identities=24% Similarity=0.346 Sum_probs=232.0
Q ss_pred ccCCCeeEEEecCCCC-------CCCCCcc--cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCC
Q 001020 588 YVFSELKYFHWNGYPL-------KAMPSYI--HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLA 658 (1187)
Q Consensus 588 ~l~~~Lr~L~l~~~~l-------~~lp~~~--~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l 658 (1187)
.-..+|++|.+..+.. ..+|..+ -+.+|+.|++.++.++.+|..+ .+.+|+.|+|++|++......+..+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccC
Confidence 3456788887765432 1355555 2356888888888888888777 4678888888887644333347778
Q ss_pred CCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCc
Q 001020 659 SNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGT 737 (1187)
Q Consensus 659 ~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~ 737 (1187)
++|+.|+|++|..+..+| .++.+++|+.|+|++|..+..+|..+ ++++|+.|++++|..++.+|.
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~------------- 699 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT------------- 699 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-------------
Confidence 888888888877777776 47778888888888888888888776 578888888888776655543
Q ss_pred cccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc----
Q 001020 738 AIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL---- 813 (1187)
Q Consensus 738 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l---- 813 (1187)
.+ ++++|+.|+|++|..+..+|.. ..+|+.|++++|. +..+|..+ .+++|.+|.+.++....+
T Consensus 700 -------~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 700 -------GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred -------cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccc
Confidence 33 4566777777777666666642 3566777777654 45566544 466677676665332222
Q ss_pred ---ch-hhhcCCCCCEEEccccCCCCcCCccCC-CCCCCCCccEEeccCCC-CCCcccccCCCCCCcEEECccC-CCccc
Q 001020 814 ---PS-SIVQLNNLYRLSFERYQGKSHMGLRLP-TMSGLRILTNLNLSDCG-ITELPNSLGQLSSLHILFRDRN-NFERI 886 (1187)
Q Consensus 814 ---p~-~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~-l~~l~~~l~~l~~L~~L~L~~n-~l~~l 886 (1187)
+. ....+++|+.|++++|..... +| .+.++++|+.|+|++|. +..+|..+ .+++|+.|+|++| .+..+
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccc----cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 11 122346888888888875543 33 37788899999999874 56687766 7899999999996 45566
Q ss_pred cccccCCCCCCEEeecCCCCCCcCCC---CCCCCCeeecccccccccccCCccccCCCCCCCCceeeecCCCCChH
Q 001020 887 PTSIIHLTNLFLLKLSYCERLQSLPE---LPCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINCFNLDGD 959 (1187)
Q Consensus 887 p~~l~~L~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~~L~~~ 959 (1187)
|.. .++|+.|+|++ +.+..+|. ..++|+.|++.+|.+|+.++... ..+..++.+.+.+|.+|...
T Consensus 842 p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~----~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 842 PDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI----SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccc---ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCccc----ccccCCCeeecCCCcccccc
Confidence 643 46899999998 46788884 35799999999999999987421 33467788999999999644
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-25 Score=260.98 Aligned_cols=360 Identities=21% Similarity=0.238 Sum_probs=254.6
Q ss_pred CccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcc-cccccceEeCcCCCccccccc
Q 001020 553 NPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEKLWGG 631 (1187)
Q Consensus 553 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~ 631 (1187)
+-++..+.-+|+.|+++||.....+..+.. ..+|+.|.++.|.+.++|... ++.+|.+|+|.+|.+..+|.+
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~-------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITL-------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhh-------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence 344555566799999999876544433332 347899999999999999766 899999999999999999999
Q ss_pred ccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCC-------------------CCcccccccccCCCcccEEEccC
Q 001020 632 AQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGC-------------------SSLLEIHPSIKYLNKLAILSLRH 692 (1187)
Q Consensus 632 ~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c-------------------~~l~~~~~~i~~L~~L~~L~L~~ 692 (1187)
+..+++|++|++|.|++....+.+..+..++.+..++| .....++..+.++.. .|+|++
T Consensus 110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 99999999999999986655444555555555555554 333344444444444 466666
Q ss_pred ccCC----------cccCcc--------ccccccceeeccccCCCCcccc-cccccceEeecCccccccchhhhccCCCc
Q 001020 693 CKCI----------KSLPTS--------IHLESLKQLFLSGCSNLNTFPE-IACTIEELFLDGTAIEELPLSIECLSRLI 753 (1187)
Q Consensus 693 c~~l----------~~lp~~--------~~l~~L~~L~Ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~ 753 (1187)
|... +.+-.. +..++|+.|+.+.|......+. ...+|++++++.+.++.+|.+++.+.+|+
T Consensus 188 N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 188 NEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred chhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccce
Confidence 5533 111110 1236667777777776655543 34579999999999999999999999999
Q ss_pred EEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhc--------------
Q 001020 754 TLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQ-------------- 819 (1187)
Q Consensus 754 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~-------------- 819 (1187)
.|++.+|.. ..+|..+....+|+.|.+..| .++.+|...+.+++|++|+|..|.|..+|..+..
T Consensus 268 ~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 999999765 778888888888888888874 5677888888888888888888888877763211
Q ss_pred ------------CCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-ccCCCCCCcEEECccCCCccc
Q 001020 820 ------------LNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-SLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 820 ------------l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l 886 (1187)
++.|+.|.+.+|.... ..+|.+.++++|+.|+|++|++.++|. .+.+++.|++|+|+||+++.|
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd---~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTD---SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccc---cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 1223344444444333 356777888888888888888888874 457788888888888888777
Q ss_pred cccc----------------------cCCCCCCEEeecCCCCCCcC--C-CCC-CCCCeeecccccc
Q 001020 887 PTSI----------------------IHLTNLFLLKLSYCERLQSL--P-ELP-CNISDMDANCCTS 927 (1187)
Q Consensus 887 p~~l----------------------~~L~~L~~L~L~~c~~L~~l--p-~l~-~sL~~L~i~~C~~ 927 (1187)
|..+ .+++.|+.+||+. ++|+.+ | .+| +.|++|+++|.+.
T Consensus 423 p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 7544 4556666666663 444332 2 245 6777777777664
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=5.8e-25 Score=234.64 Aligned_cols=321 Identities=24% Similarity=0.320 Sum_probs=173.3
Q ss_pred eeEEEecCCCCCCCCCcc-cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCC
Q 001020 593 LKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 671 (1187)
|..|+..+|.+.++|..+ .+..|..|++.+|+++.+|...-.++.|+.||..+|-..+..|+++++..|+.|+|..| .
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-k 217 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-K 217 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-c
Confidence 344444455555555444 44555555555555555555444455555555555543333334555555555555553 2
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccc--cccccceeeccccCCCCccccccc---ccceEeecCccccccchhh
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI--HLESLKQLFLSGCSNLNTFPEIAC---TIEELFLDGTAIEELPLSI 746 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~~~~~~~---~L~~L~L~~~~i~~lp~~i 746 (1187)
+..+| .|..+..|..|++..|. ++.+|... ++.+|..|||.+| +++..|...+ +|++|++++|.|+.+|.++
T Consensus 218 i~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 218 IRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred cccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCccc
Confidence 34444 45555555555554433 44444443 3566666666653 3555555433 4556677777777777777
Q ss_pred hccCCCcEEeccCCCCCcc-------------------------------------ccc----ccCCCCCCCEEeccCCC
Q 001020 747 ECLSRLITLNLENCSRLEC-------------------------------------LSS----SLCKLKSLQHLNLFGCT 785 (1187)
Q Consensus 747 ~~l~~L~~L~L~~~~~l~~-------------------------------------lp~----~l~~l~~L~~L~L~~~~ 785 (1187)
+++ .|+.|-+.+|+.-+. .|. ....+.+.+.|++++ .
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~ 372 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-K 372 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-c
Confidence 766 666666666542100 000 011223344444443 2
Q ss_pred CCccCCc--------------------------ccCCccccc-EEEcccCcccccchhhhcCCCCCEEEccccCCCCcCC
Q 001020 786 KVERLPD--------------------------EFGNLEALM-EMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMG 838 (1187)
Q Consensus 786 ~l~~lp~--------------------------~l~~l~~L~-~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 838 (1187)
.+..+|. .+..+..+. .+.+++|.+.-+|..++.+++|..|++++|....
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--- 449 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--- 449 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh---
Confidence 2222332 111111111 1222333333444455677888888888876554
Q ss_pred ccCCC-CCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCC---
Q 001020 839 LRLPT-MSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTS-IIHLTNLFLLKLSYCERLQSLPEL--- 913 (1187)
Q Consensus 839 ~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~~L~~lp~l--- 913 (1187)
+|. +..+..|+.|+|+.|++..+|..+..+..|+.+-.++|++..++.+ +.++.+|..|+|.+ +.++++|..
T Consensus 450 --LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn 526 (565)
T KOG0472|consen 450 --LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGN 526 (565)
T ss_pred --cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhcc
Confidence 333 6667778888888888877777776666666666666777777664 77777777777775 456666642
Q ss_pred CCCCCeeecccc
Q 001020 914 PCNISDMDANCC 925 (1187)
Q Consensus 914 ~~sL~~L~i~~C 925 (1187)
..+|++|++.|.
T Consensus 527 mtnL~hLeL~gN 538 (565)
T KOG0472|consen 527 MTNLRHLELDGN 538 (565)
T ss_pred ccceeEEEecCC
Confidence 234455554443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-23 Score=244.32 Aligned_cols=351 Identities=21% Similarity=0.262 Sum_probs=243.9
Q ss_pred CeeEEEecCCCCCCCCCcc-cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 669 (1187)
+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|+.+|....++.+|++|+|.+|+ +..+| .++.+.+|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh
Confidence 4999999999999999887 7899999999999999999999999999999999886 45555 5999999999999995
Q ss_pred CCcccccccccCCCcccEEEccCccCCcc-------------------cCccccccccc-eeeccccCCC----------
Q 001020 670 SSLLEIHPSIKYLNKLAILSLRHCKCIKS-------------------LPTSIHLESLK-QLFLSGCSNL---------- 719 (1187)
Q Consensus 670 ~~l~~~~~~i~~L~~L~~L~L~~c~~l~~-------------------lp~~~~l~~L~-~L~Ls~c~~l---------- 719 (1187)
.....|..+..+..+..+..++|..+.. ++..+ ..|+ .|+|+.|...
T Consensus 125 -~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 125 -HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred -ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch--hhhheeeecccchhhhhhhhhccch
Confidence 4566676666666666666666533322 22222 1222 2455444332
Q ss_pred Cccccc----------ccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCcc
Q 001020 720 NTFPEI----------ACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVER 789 (1187)
Q Consensus 720 ~~~~~~----------~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 789 (1187)
+.+-.. ..+++.|+.+.|.+..+.. -..-.+|++++++.+ .+..+|++++.+.+|+.|.+..|. +..
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~-l~~ 278 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNR-LVA 278 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeecc-ccccccceeeecchh-hhhcchHHHHhcccceEecccchh-HHh
Confidence 111110 1123333333333332111 122356777777774 456677888888888888888754 477
Q ss_pred CCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCC--------------------ccCCCC--CCC
Q 001020 790 LPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMG--------------------LRLPTM--SGL 847 (1187)
Q Consensus 790 lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~--------------------~~l~~l--~~l 847 (1187)
+|..+..+++|+.|.+..|.+..+|+....+++|++|+|..|....... ..+|.. ..+
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 8888888888888888888888888888889999999998877554321 011111 224
Q ss_pred CCccEEeccCCCCCC-cccccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCCCCCcCCC-------------
Q 001020 848 RILTNLNLSDCGITE-LPNSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCERLQSLPE------------- 912 (1187)
Q Consensus 848 ~~L~~L~Ls~~~l~~-l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~~L~~lp~------------- 912 (1187)
+.|+.|.+.+|.+++ .-+.+.++..|+.|+|++|++.++|. .+.+|+.|+.|+|++| +|+.+|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence 568888899999887 45567889999999999999999998 5799999999999994 5666663
Q ss_pred ----------C--CCCCCeeecccccccccccCCccccCCCCCCCCceeeecCC
Q 001020 913 ----------L--PCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINCF 954 (1187)
Q Consensus 913 ----------l--~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~ 954 (1187)
+ .+.|+.+|++ |-.|..+.- .... | .+.+++|++++=.
T Consensus 438 hsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l-~~~~-p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTL-PEAL-P-SPNLKYLDLSGNT 487 (1081)
T ss_pred cCCceeechhhhhcCcceEEecc-cchhhhhhh-hhhC-C-CcccceeeccCCc
Confidence 1 3567777775 445555431 1111 1 1567777777644
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.80 E-value=5.1e-21 Score=190.30 Aligned_cols=134 Identities=31% Similarity=0.537 Sum_probs=115.2
Q ss_pred EEEcccccccccchHHHHHHHHhhC--CCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHHHHHH
Q 001020 22 VFLSFRGEDTRDNFTSHLYAALCRK--NIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEIVKIL 98 (1187)
Q Consensus 22 vFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~ 98 (1187)
|||||++.|.+.+|+++|..+|++. |+++|+++ |+.+|..+.++|.++|++||++|+|||++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999555789999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhccccCCCceEEeEEEEecccccc-ccccchhhHHHHHHHHhcCC--hHHHHHHHHHHH
Q 001020 99 ECKNDKNIGQIVVPVFYRVDPSDVR-NQTGIFGDGFLKLEERFMEW--PEKLESWRIALR 155 (1187)
Q Consensus 99 ~~~~~~~~~~~v~pvfy~vdp~~vr-~q~g~~~~~~~~~~~~~~~~--~~~v~~wr~aL~ 155 (1187)
++.......++|+|+||+|.+++++ .+.+.|+.++.....-.... ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998322358999999999999999 79999988887665443332 467889998875
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.6e-18 Score=211.91 Aligned_cols=255 Identities=22% Similarity=0.274 Sum_probs=161.3
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 671 (1187)
.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|+|++|++. .+|.+ .++|+.|+|++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~- 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP- 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-
Confidence 45577888888888888663 5788889998888888753 578888888888644 45542 4678888888764
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCC
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSR 751 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 751 (1187)
+..+|.. ..+|+.|++++|. +..+|. .+++|+.|+|++| .+..+|..+.+|+.|++++|.++.+|.. ..+
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~ 343 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSG 343 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---ccc
Confidence 5555542 2456777777765 555664 2456777777775 3445565556666677777766666641 235
Q ss_pred CcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEcccc
Q 001020 752 LITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERY 831 (1187)
Q Consensus 752 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~ 831 (1187)
|+.|+|++|+ +..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.|+.+|..
T Consensus 344 Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l--------------- 400 (788)
T PRK15387 344 LQELSVSDNQ-LASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVL--------------- 400 (788)
T ss_pred cceEecCCCc-cCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCCCc---------------
Confidence 6666666543 2334421 2344445554432 2334432 12344444444444443321
Q ss_pred CCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 832 QGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 832 ~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
.++|+.|++++|.++.+|.. +.+|+.|+|++|+|+.+|.++.++++|+.|+|++|+
T Consensus 401 ---------------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 401 ---------------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---------------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 24577777788877777753 346777888888888888878888888888888765
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.76 E-value=2.6e-18 Score=171.41 Aligned_cols=137 Identities=38% Similarity=0.643 Sum_probs=116.7
Q ss_pred cccEEEcccc-cccccchHHHHHHHHhhCCCcEEEeCCCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHHHHH
Q 001020 19 KYDVFLSFRG-EDTRDNFTSHLYAALCRKNIETFIDNQLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEIVKI 97 (1187)
Q Consensus 19 ~~dvFis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~ 97 (1187)
.|||||||++ +|+++.|+.+|..+|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|..|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 56678999999999999999999998544344443 999999999999999999999999999999999
Q ss_pred HHhccccCCCceEEeEEEEeccccccccccchhhHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 001020 98 LECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKLEERFMEWPEKLESWRIALREAA 158 (1187)
Q Consensus 98 ~~~~~~~~~~~~v~pvfy~vdp~~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~aL~~~a 158 (1187)
.++... .....|+||+|+..|+.+..+.+.++.++.....++.....+ +.|+.++...+
T Consensus 80 ~~~~~~-~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALE-EGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHH-cCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 988763 256799999999999999999999999998886665544333 68999887665
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=7.7e-17 Score=197.26 Aligned_cols=237 Identities=23% Similarity=0.249 Sum_probs=174.1
Q ss_pred CCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCC
Q 001020 591 SELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCS 670 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 670 (1187)
.+|+.|.+.+|.++.+|.. +++|++|+|++|+|+.+|.. .++|+.|+|++|.+ ..+|.+ ..+|+.|+|++|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l--p~~L~~L~Ls~N- 292 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL--PSGLCKLWIFGN- 292 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc--hhhcCEEECcCC-
Confidence 4677788888888888764 57788888888888887753 45778888888763 444442 356778888886
Q ss_pred CcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccC
Q 001020 671 SLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLS 750 (1187)
Q Consensus 671 ~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~ 750 (1187)
.+..+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|....+|+.|+|++|.++.+|.. .+
T Consensus 293 ~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~ 362 (788)
T PRK15387 293 QLTSLPVL---PPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNNQ-LTSLPTLPSGLQELSVSDNQLASLPTL---PS 362 (788)
T ss_pred cccccccc---ccccceeECCCCc-cccCCCC--cccccccccccCc-cccccccccccceEecCCCccCCCCCC---Cc
Confidence 35566642 4678888888875 5556642 3467788888764 456777777899999999999988863 35
Q ss_pred CCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccc
Q 001020 751 RLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFER 830 (1187)
Q Consensus 751 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~ 830 (1187)
+|+.|++++|. +..+|.. +.+|+.|+|++|. +..+|.. .++|+.|++++|.++.+|...
T Consensus 363 ~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~LssIP~l~------------- 421 (788)
T PRK15387 363 ELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNRLTSLPMLP------------- 421 (788)
T ss_pred ccceehhhccc-cccCccc---ccccceEEecCCc-ccCCCCc---ccCCCEEEccCCcCCCCCcch-------------
Confidence 77888888865 4456653 3578999999875 4557654 357899999999988776421
Q ss_pred cCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCc
Q 001020 831 YQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 831 ~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
.+|+.|++++|.++.+|..+..+++|+.|+|++|.|+
T Consensus 422 -----------------~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 422 -----------------SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -----------------hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 2466788888888889988889999999999999887
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.1e-16 Score=197.55 Aligned_cols=203 Identities=24% Similarity=0.354 Sum_probs=94.9
Q ss_pred eeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCC
Q 001020 593 LKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 671 (1187)
...|+++++.++++|..+ +++|+.|+|++|+|+.+|..+. .+|++|+|++|++ +.+|. + ..+|+.|+|++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l--~~~L~~L~Ls~N~- 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATL--PDTIQEMELSINR- 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhh--hccccEEECcCCc-
Confidence 445555555555555543 3455666666666666555442 3566666665543 23332 2 1345566665543
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCccccc-ccccceEeecCccccccchhhhccC
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEI-ACTIEELFLDGTAIEELPLSIECLS 750 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp~~i~~l~ 750 (1187)
+..+|..+. .+|+.|++++|. +..+|..+ .++|+.|++++|. +..+|.. ..+|+.|++++|.++.+|..+ .+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~ 325 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNK-ISCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETL--PP 325 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCc-cCcccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccc--cc
Confidence 334554442 355566665443 34444432 2345555555542 2333322 224555555555555555433 23
Q ss_pred CCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch
Q 001020 751 RLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS 815 (1187)
Q Consensus 751 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~ 815 (1187)
+|+.|++++|. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.++.+|.
T Consensus 326 sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 326 GLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred cceeccccCCc-cccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence 45555555543 223443332 345555554442 223333221 344444444444444443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=4.1e-16 Score=192.44 Aligned_cols=242 Identities=19% Similarity=0.271 Sum_probs=183.8
Q ss_pred ccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEE
Q 001020 562 KLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYM 641 (1187)
Q Consensus 562 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 641 (1187)
+...|++.++.+.. ++. .++..|+.|++++|.++++|..+. .+|++|++++|+++.+|..+. .+|+.|
T Consensus 179 ~~~~L~L~~~~Lts------LP~---~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTT------IPA---CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCc------CCc---ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence 34567776543322 221 235679999999999999998764 699999999999999987664 479999
Q ss_pred EcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCC
Q 001020 642 DLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLN 720 (1187)
Q Consensus 642 ~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~ 720 (1187)
+|++|.+. .+|. +. .+|+.|+|++| .+..+|..+. .+|+.|++++|. ++.+|..+ ..+|+.|++++|...
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l-p~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHL-PSGITHLNVQSNSLT- 317 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccc-hhhHHHHHhcCCccc-
Confidence 99999865 5554 43 58999999975 5667887664 589999999985 66777644 357999999987644
Q ss_pred cccc-cccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCccc
Q 001020 721 TFPE-IACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEA 799 (1187)
Q Consensus 721 ~~~~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 799 (1187)
.+|. ...+|+.|++++|.++.+|..+. ++|+.|+|++|+ +..+|..+ .++|+.|+|++|. +..+|..+. .+
T Consensus 318 ~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~s 389 (754)
T PRK15370 318 ALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA-LTNLPENLP--AA 389 (754)
T ss_pred cCCccccccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhh--cCCcCEEECCCCc-CCCCCHhHH--HH
Confidence 4554 55689999999999999998764 799999999986 45677665 3799999999975 557777654 47
Q ss_pred ccEEEcccCcccccchhhhc----CCCCCEEEccccC
Q 001020 800 LMEMKAVRSSIRELPSSIVQ----LNNLYRLSFERYQ 832 (1187)
Q Consensus 800 L~~L~l~~n~i~~lp~~l~~----l~~L~~L~l~~~~ 832 (1187)
|+.|++++|.+..+|..+.. ++++..|++.+|.
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 99999999999988875543 3455555555554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=4.5e-16 Score=167.30 Aligned_cols=246 Identities=19% Similarity=0.202 Sum_probs=168.2
Q ss_pred ccCCCeeEEEecCCCCCCCCCcc--cccccceEeCcCCCcccc-cccccccCCccEEEcCCCCCCcccCC--CCCCCCcc
Q 001020 588 YVFSELKYFHWNGYPLKAMPSYI--HQENLIALEMPHSSVEKL-WGGAQQLVNLKYMDLSHSKQLTEIPD--LSLASNIE 662 (1187)
Q Consensus 588 ~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~ 662 (1187)
.+|.+-..+.++.|.|+++|+.. .+++|+.|+|++|.|+.+ |..|+.+++|-.|-+-+++.++.+|. |.++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 34566678888889999988764 788899999999998877 66778888888777777555666664 88888888
Q ss_pred EEecCCCCCcccccccccCCCcccEEEccCccCCcccCcc-c-cccccceeeccccCCC------------Ccccccc--
Q 001020 663 KLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTS-I-HLESLKQLFLSGCSNL------------NTFPEIA-- 726 (1187)
Q Consensus 663 ~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l------------~~~~~~~-- 726 (1187)
.|.+.-|..-......+..|++|..|.+.+|. +..++.. + .+.+++++.+..|..+ ...|...
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 88888766555555667888888888888765 5555552 3 5777887777655411 1111000
Q ss_pred -----------------------cccceE----eecCccccccch-hhhccCCCcEEeccCCCCCcccccccCCCCCCCE
Q 001020 727 -----------------------CTIEEL----FLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSSSLCKLKSLQH 778 (1187)
Q Consensus 727 -----------------------~~L~~L----~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 778 (1187)
+.++.+ ....+.....|. -|..+++|++|+|++|+....-+.+|..+..|++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 011111 111112222232 2677888888888888877777778888888888
Q ss_pred EeccCCCCCccCCcccCCcccccEEEcccCccccc-chhhhcCCCCCEEEccccCCC
Q 001020 779 LNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-PSSIVQLNNLYRLSFERYQGK 834 (1187)
Q Consensus 779 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~ 834 (1187)
|.|..|..-..-...|.++..|+.|+|.+|+|+.+ |..+..+..|.+|++-.|+..
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 88888654333334577888888888888888865 446677788888888766543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1e-15 Score=146.17 Aligned_cols=168 Identities=29% Similarity=0.408 Sum_probs=116.8
Q ss_pred ccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEccc
Q 001020 728 TIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVR 807 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 807 (1187)
+++.|.|++|.++.+|+.+..+.+|+.|++++| .++.+|.+++.+++|+.|++.- +.+..+|..|+.++.|+.||+.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccc
Confidence 455566666777777777777777777777764 4566777777777777777765 34556677777777777777776
Q ss_pred Cccc--ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcc
Q 001020 808 SSIR--ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFER 885 (1187)
Q Consensus 808 n~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~ 885 (1187)
|++. .+|.. |-.+..|+.|.|++|.+.-+|..++.+++|+.|.+..|++.+
T Consensus 112 nnl~e~~lpgn---------------------------ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 112 NNLNENSLPGN---------------------------FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred cccccccCCcc---------------------------hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh
Confidence 6654 23332 344556777777777777788888888888888888888888
Q ss_pred ccccccCCCCCCEEeecCCCCCCcCCCCCCCCCeeeccccccc
Q 001020 886 IPTSIIHLTNLFLLKLSYCERLQSLPELPCNISDMDANCCTSL 928 (1187)
Q Consensus 886 lp~~l~~L~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L 928 (1187)
+|..++.|..|+.|.|.++ .|+.+| |.|-.|++.+-.+.
T Consensus 165 lpkeig~lt~lrelhiqgn-rl~vlp---pel~~l~l~~~k~v 203 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGN-RLTVLP---PELANLDLVGNKQV 203 (264)
T ss_pred CcHHHHHHHHHHHHhcccc-eeeecC---hhhhhhhhhhhHHH
Confidence 8888888888888888874 455544 45555555444433
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=3.1e-15 Score=142.82 Aligned_cols=158 Identities=22% Similarity=0.329 Sum_probs=102.8
Q ss_pred CCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCC
Q 001020 603 LKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYL 682 (1187)
Q Consensus 603 l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L 682 (1187)
+..+|..|++.++..|-|++|++..+|..+..+.+|+.|++++|++....+.++.++.|+.|++.- +.+..+|..+|.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 345777788888888888888888888888888888888888776544444577777777777765 3456667777777
Q ss_pred CcccEEEccCccCC-cccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCC
Q 001020 683 NKLAILSLRHCKCI-KSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENC 760 (1187)
Q Consensus 683 ~~L~~L~L~~c~~l-~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 760 (1187)
+-|+.|+|.+|+.- ..+|..+ .+.. |+.|+|+.|.++-+|..++.+++|+.|.+.+|
T Consensus 102 p~levldltynnl~e~~lpgnff~m~t---------------------lralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTT---------------------LRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHH---------------------HHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 77777777665422 2344433 2333 44445555777778887887777777777774
Q ss_pred CCCcccccccCCCCCCCEEeccC
Q 001020 761 SRLECLSSSLCKLKSLQHLNLFG 783 (1187)
Q Consensus 761 ~~l~~lp~~l~~l~~L~~L~L~~ 783 (1187)
. +-++|..++.|..|++|.+.+
T Consensus 161 d-ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 161 D-LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred c-hhhCcHHHHHHHHHHHHhccc
Confidence 3 334444444444444444444
No 25
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.44 E-value=6.5e-14 Score=131.06 Aligned_cols=91 Identities=29% Similarity=0.560 Sum_probs=77.8
Q ss_pred EEEcccccccccchHHHHHHHHhhCCCcEEEeCCCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHHHHHHHhc
Q 001020 22 VFLSFRGEDTRDNFTSHLYAALCRKNIETFIDNQLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEIVKILECK 101 (1187)
Q Consensus 22 vFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~ 101 (1187)
|||||+++| +.|+++|++.|++.|+++|.|.++.+|+.+.+.|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6799999999999999999999999999999999999999999999999999999999999998843
Q ss_pred cccCCCceEEeEEEEeccccc
Q 001020 102 NDKNIGQIVVPVFYRVDPSDV 122 (1187)
Q Consensus 102 ~~~~~~~~v~pvfy~vdp~~v 122 (1187)
.+..|+||. +++.++
T Consensus 77 ----~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 77 ----RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp ----TSESEEEEE--CSGGGS
T ss_pred ----CCCEEEEEE--ECCcCC
Confidence 444899998 555544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=6.6e-15 Score=158.45 Aligned_cols=272 Identities=20% Similarity=0.213 Sum_probs=155.3
Q ss_pred EEecCCCCCCCCCcccccccceEeCcCCCccccccc-ccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcc
Q 001020 596 FHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLL 673 (1187)
Q Consensus 596 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 673 (1187)
.+.++-.++.+|... ++.-++++|..|.|+.+|.+ |+.+++||.||||+|.+...-|+ |.++++|-.|-+.+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344555677777665 56788999999999999875 69999999999999998877786 9999999999999988888
Q ss_pred ccccc-ccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccch-hhhccC
Q 001020 674 EIHPS-IKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL-SIECLS 750 (1187)
Q Consensus 674 ~~~~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~ 750 (1187)
.+|.. |+.|..|+.|.+.-|+.--.....+ .+++|..|.+.+ |.+..++. ++..+.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD---------------------n~~q~i~~~tf~~l~ 188 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD---------------------NKIQSICKGTFQGLA 188 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc---------------------hhhhhhccccccchh
Confidence 88864 7888888888887665322222222 355555555544 44555554 455555
Q ss_pred CCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhc--CCCCCEEEc
Q 001020 751 RLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQ--LNNLYRLSF 828 (1187)
Q Consensus 751 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~--l~~L~~L~l 828 (1187)
.++.+.+..|...- .++++.|... ....|..++......-..+.+..+.+++..=.. +..+..=-.
T Consensus 189 ~i~tlhlA~np~ic-----dCnL~wla~~-------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~ 256 (498)
T KOG4237|consen 189 AIKTLHLAQNPFIC-----DCNLPWLADD-------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS 256 (498)
T ss_pred ccchHhhhcCcccc-----ccccchhhhH-------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc
Confidence 66666555543211 1222221111 111122233333333333333333332221000 001100000
Q ss_pred cccCCCCcCCccCCC--CCCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCC
Q 001020 829 ERYQGKSHMGLRLPT--MSGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 829 ~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c 904 (1187)
+.|.... .-|. |.++++|+.|+|++|.++.+. .++.....|++|.|..|++..+.. .+.++..|+.|+|.+|
T Consensus 257 ~~d~~d~----~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 257 SEDFPDS----ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred cccCcCC----cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 1111100 1111 566666666666666666643 445666666666666666665554 3566666666666664
Q ss_pred C
Q 001020 905 E 905 (1187)
Q Consensus 905 ~ 905 (1187)
+
T Consensus 333 ~ 333 (498)
T KOG4237|consen 333 Q 333 (498)
T ss_pred e
Confidence 3
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=2.9e-14 Score=163.86 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCcEEeccCCCCCc----ccccccCCCCCCCEEeccCCCCCc----cCCcccCCcccccEEEcccCccc-----ccchh
Q 001020 750 SRLITLNLENCSRLE----CLSSSLCKLKSLQHLNLFGCTKVE----RLPDEFGNLEALMEMKAVRSSIR-----ELPSS 816 (1187)
Q Consensus 750 ~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~-----~lp~~ 816 (1187)
++|+.|++++|.... .++..+..+++|++|++++|.... .++..+..+++|+.|++++|.+. .+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 444444444444321 122233344445555555443221 12222333345555555555443 22233
Q ss_pred hhcCCCCCEEEccccCCCCcCCccCCC--CCCCCCccEEeccCCCCCC-----cccccCCCCCCcEEECccCCCccc---
Q 001020 817 IVQLNNLYRLSFERYQGKSHMGLRLPT--MSGLRILTNLNLSDCGITE-----LPNSLGQLSSLHILFRDRNNFERI--- 886 (1187)
Q Consensus 817 l~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l--- 886 (1187)
+..+++|+.|++++|.........+.. ....+.|++|++++|.+++ +...+..+++|+.|++++|.+..-
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 344455555555555432200000000 0123567777777776652 334445556777777777776632
Q ss_pred --cccccCC-CCCCEEeecCC
Q 001020 887 --PTSIIHL-TNLFLLKLSYC 904 (1187)
Q Consensus 887 --p~~l~~L-~~L~~L~L~~c 904 (1187)
...+... +.|+.|++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHhhcCCchhhcccCCC
Confidence 2233334 56666666654
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=6.8e-14 Score=160.77 Aligned_cols=257 Identities=18% Similarity=0.170 Sum_probs=139.8
Q ss_pred ccccceEeCcCCCcc-----cccccccccCCccEEEcCCCCCCc------ccC-CCCCCCCccEEecCCCCCcccccccc
Q 001020 612 QENLIALEMPHSSVE-----KLWGGAQQLVNLKYMDLSHSKQLT------EIP-DLSLASNIEKLNLDGCSSLLEIHPSI 679 (1187)
Q Consensus 612 ~~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~------~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i 679 (1187)
+.+|++|+++++.+. .++..+...++|+.|+++++.... .++ .+..+++|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 445666666666652 344445556666666666654331 011 13445555555555554433333333
Q ss_pred cCCCc---ccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCcccc-----ccchhhhccCC
Q 001020 680 KYLNK---LAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIE-----ELPLSIECLSR 751 (1187)
Q Consensus 680 ~~L~~---L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~-----~lp~~i~~l~~ 751 (1187)
..+.+ |++|++++|.....-...+. ..++....+|+.|++++|.++ .++..+..+++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~---------------~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLA---------------KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHH---------------HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 32222 55555555442210000000 000011134555555555554 34445566677
Q ss_pred CcEEeccCCCCCc----ccccccCCCCCCCEEeccCCCCC----ccCCcccCCcccccEEEcccCccccc-chhh-h---
Q 001020 752 LITLNLENCSRLE----CLSSSLCKLKSLQHLNLFGCTKV----ERLPDEFGNLEALMEMKAVRSSIREL-PSSI-V--- 818 (1187)
Q Consensus 752 L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l-~--- 818 (1187)
|+.|+|++|.... .++..+..+++|+.|++++|... ..++..+..+++|++|++++|.++.. ...+ .
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 7788877766542 23344555678888888877543 22344566677888888888877631 1111 1
Q ss_pred -cCCCCCEEEccccCCCCcCCccC-CCCCCCCCccEEeccCCCCCC-----cccccCCC-CCCcEEECccCCC
Q 001020 819 -QLNNLYRLSFERYQGKSHMGLRL-PTMSGLRILTNLNLSDCGITE-----LPNSLGQL-SSLHILFRDRNNF 883 (1187)
Q Consensus 819 -~l~~L~~L~l~~~~~~~~~~~~l-~~l~~l~~L~~L~Ls~~~l~~-----l~~~l~~l-~~L~~L~L~~n~l 883 (1187)
..+.|+.|++.+|.........+ ..+..+++|+.|++++|.+++ +...+... +.|+.|++.+|.+
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 24788889988887543211111 124556889999999999885 33445555 7899998887753
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=9.7e-11 Score=154.39 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=179.9
Q ss_pred ccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc-cCChHHH
Q 001020 190 YRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER-TGGLSQL 268 (1187)
Q Consensus 190 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~~l~~l 268 (1187)
+|....++|-|..-++.+.. ....+++.|.|++|.||||++..+..+ ++.++|+ .+...... ..-...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~-~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWY-SLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEE-ecCcccCCHHHHHHHH
Confidence 45566788888877766653 235789999999999999999998753 3367888 44332211 0112233
Q ss_pred HHHHhhccccCCCCC---------Cccccch--hhccc--CCceEEEEEcCCCChH---HHHHHhccCCCCCCCcEEEEE
Q 001020 269 RQKLFSEDESLSVGI---------PNVGLNF--RGKRL--SRKKIIIVFDDVTCSE---QIKFLIGSLDWFTSGSRIIIT 332 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~---------~~~~~~~--~~~~l--~~kr~LlVLDDv~~~~---~l~~l~~~~~~~~~gsrIIiT 332 (1187)
...+........... ....... ....+ .+.+++|||||+...+ ..+.+...+....++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 333321110000000 0000000 00111 2679999999996532 122222222333567789999
Q ss_pred eCChhhhh--hc-CcceeEEec----CCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCC
Q 001020 333 TRDKQVLK--NC-RVDGIYEVE----ALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGR 405 (1187)
Q Consensus 333 TR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~ 405 (1187)
||...-.. .. ......++. +|+.+|+.++|.......-. .+.+.++.+.++|+|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~------~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE------AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC------HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 99842111 11 112345566 89999999999876532211 2567889999999999999988776543
Q ss_pred CHHHHHHHHHHhhcCCCchHHHHHHH-hcCCCCHHHHHHHhhhhcccCCCCHHHHHHHHHhcCCccccchHhhhccccce
Q 001020 406 KMEDWESAANKLKKVPHLDIQKVLKA-SYDGLDDEEQNIFLDIACFFKGEDKDLVVEFLDASGFSAEIGISVLVDKSLII 484 (1187)
Q Consensus 406 ~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~ 484 (1187)
... .......+...+...+...+.- .++.||++.++.++..|+++ .++.+....+... -.+...++.|.+.+++.
T Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 233 NSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFI 308 (903)
T ss_pred CCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCee
Confidence 210 0111222222223456665443 48899999999999999986 5666655555432 23467789999999865
Q ss_pred e-e---CCEEEehHhhhhhhhhhhcc
Q 001020 485 I-L---KNKIIMHDLLQGMGREIVRQ 506 (1187)
Q Consensus 485 ~-~---~~~~~mHdll~~~~~~i~~~ 506 (1187)
. . ...|.+|++++++.+.....
T Consensus 309 ~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 309 QRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred EeecCCCCEEehhHHHHHHHHHHHHh
Confidence 3 2 23799999999999987643
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3.3e-12 Score=160.45 Aligned_cols=258 Identities=22% Similarity=0.216 Sum_probs=155.8
Q ss_pred CCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCC-CcccCC--CCCCCCccEEecCCCCCccccccc
Q 001020 602 PLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQ-LTEIPD--LSLASNIEKLNLDGCSSLLEIHPS 678 (1187)
Q Consensus 602 ~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~l~~L~~L~L~~c~~l~~~~~~ 678 (1187)
.....|...+....+...+-++.+..++.... .++|++|-+..|.. +..++. |..++.|+.|||++|..+.++|.+
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 34456666677788889999999888876554 44798988888863 555554 788999999999998889999999
Q ss_pred ccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEec
Q 001020 679 IKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNL 757 (1187)
Q Consensus 679 i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 757 (1187)
|+.|-+|++|+++++. +..+|..+ +++.|.+|++..+..+..+ |.....+++|++|.+
T Consensus 591 I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--------------------~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESI--------------------PGILLELQSLRVLRL 649 (889)
T ss_pred HhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccc--------------------cchhhhcccccEEEe
Confidence 9999999999888755 66777777 4777777777665433322 222344777777777
Q ss_pred cCCC--CCcccccccCCCCCCCEEeccCCCCCccCCcccCCccccc----EEEcccCcccccchhhhcCCCCCEEEcccc
Q 001020 758 ENCS--RLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALM----EMKAVRSSIRELPSSIVQLNNLYRLSFERY 831 (1187)
Q Consensus 758 ~~~~--~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~----~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~ 831 (1187)
.... .....-..+.+|.+|+.|....++. .+-..+..+..|. .+.+.++.....+.++..+.+|+.|.+.+|
T Consensus 650 ~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 650 PRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred eccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence 5532 1112222345555566555544332 1111222233222 333333444455666667777777777777
Q ss_pred CCCCcCCccCCCCC---CCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCC
Q 001020 832 QGKSHMGLRLPTMS---GLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNF 883 (1187)
Q Consensus 832 ~~~~~~~~~l~~l~---~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l 883 (1187)
.............. .+++|..+.+.+|.....+.+....++|+.|.+..+..
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 66543211111111 13344455555554444444444566777777766543
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=3.5e-09 Score=121.34 Aligned_cols=258 Identities=16% Similarity=0.128 Sum_probs=152.8
Q ss_pred cCCCCCccchHHHHHHHHHhhcc---CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLST---GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
|....+|||++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +. ..... .....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~-~~~~~----~~~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---IT-SGPAL----EKPGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EE-ecccc----cChHH
Confidence 34557899999999999888753 1233567889999999999999999998754331 11 11100 11111
Q ss_pred HHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCC-------------------CCCC
Q 001020 268 LRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDW-------------------FTSG 326 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~-------------------~~~g 326 (1187)
+. .++... ++.-+|++|+++... ..+.+...+.. ..+.
T Consensus 93 l~-~~l~~l--------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 93 LA-AILTNL--------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HH-HHHHhc--------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 11 111111 123467778775432 11111111000 0123
Q ss_pred cEEEEEeCChhhhhhc--CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcC
Q 001020 327 SRIIITTRDKQVLKNC--RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFG 404 (1187)
Q Consensus 327 srIIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~ 404 (1187)
+-|..|||...+.... .....++++.++.++..+++.+.+....... ..+.+..|++.|+|.|-.+..+...+
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 4455666754333221 1234689999999999999998876544332 23678899999999996555544432
Q ss_pred CCHHHHHHHHHHhhcCCC---chHHHHHHHhcCCCCHHHHHHHh-hhhcccCC-CCHHHHHHHHHhcCCccccchH-hhh
Q 001020 405 RKMEDWESAANKLKKVPH---LDIQKVLKASYDGLDDEEQNIFL-DIACFFKG-EDKDLVVEFLDASGFSAEIGIS-VLV 478 (1187)
Q Consensus 405 ~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~ 478 (1187)
..|.... .-..... ....+.+...+..|++..+..+. .+..|..+ ...+.+...+......++..++ .|+
T Consensus 227 ---~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 227 ---RDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ---HHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 1111110 0001111 12234456778899988888886 55666554 4677787777665556666677 899
Q ss_pred ccccceee
Q 001020 479 DKSLIIIL 486 (1187)
Q Consensus 479 ~~sLi~~~ 486 (1187)
+.+||...
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999654
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=8.2e-09 Score=117.52 Aligned_cols=253 Identities=19% Similarity=0.153 Sum_probs=147.5
Q ss_pred CCccchHHHHHHHHHhhccC---CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHH
Q 001020 195 KDLIGVESSIRQIESLLSTG---SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQK 271 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 271 (1187)
.+|||++..+++|..++... ....+.+.++|++|+|||+||+++++.+...+. +...... .....+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHHHH
Confidence 46999999999999888531 233456889999999999999999998754331 1111100 111122211
Q ss_pred HhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCC-------------------CCCCCcEEE
Q 001020 272 LFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLD-------------------WFTSGSRII 330 (1187)
Q Consensus 272 ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~-------------------~~~~gsrII 330 (1187)
+ ... +...++++||++.. .+.+.+...+. ...+.+-|.
T Consensus 76 l-~~~--------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 76 L-TNL--------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred H-Hhc--------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 1 110 12346666766432 11122211100 012344555
Q ss_pred EEeCChhhhhhc--CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCCCHH
Q 001020 331 ITTRDKQVLKNC--RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGRKME 408 (1187)
Q Consensus 331 iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~~~~ 408 (1187)
.|||...+.... .....+++++++.+|..+++...+...... -..+....|++.|+|.|-.+..++..+
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~------ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRV------ 205 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHH------
Confidence 677765443321 123568999999999999999887643322 223667889999999997665554432
Q ss_pred HHHHHHH-HhhcCCC---chHHHHHHHhcCCCCHHHHHHHh-hhhcccCC-CCHHHHHHHHHhcCCccccchH-hhhccc
Q 001020 409 DWESAAN-KLKKVPH---LDIQKVLKASYDGLDDEEQNIFL-DIACFFKG-EDKDLVVEFLDASGFSAEIGIS-VLVDKS 481 (1187)
Q Consensus 409 ~w~~~l~-~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~s 481 (1187)
|..+.. .-..... ......+...|.+|++.++..+. .++.+..+ ...+.+...+......++..++ .|++++
T Consensus 206 -~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 206 -RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIG 284 (305)
T ss_pred -HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcC
Confidence 111100 0000000 11222356678899998888776 44656443 4667777777666666677678 699999
Q ss_pred cceee
Q 001020 482 LIIIL 486 (1187)
Q Consensus 482 Li~~~ 486 (1187)
||...
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99643
No 33
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.94 E-value=3.5e-08 Score=116.79 Aligned_cols=281 Identities=15% Similarity=0.090 Sum_probs=153.4
Q ss_pred CCCCCccchHHHHHHHHHhhccC--CCCeEEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEechhhhcccCChHH
Q 001020 192 TDNKDLIGVESSIRQIESLLSTG--SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE--GSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~ 267 (1187)
..++.++||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+..... ..+++ +.... .....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i-n~~~~----~~~~~ 101 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI-NCQID----RTRYA 101 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE-ECCcC----CCHHH
Confidence 35678999999999999988432 233456789999999999999999998765542 23444 23222 22334
Q ss_pred HHHHHhhcccc--CCCCCCcccc--chhhcc--cCCceEEEEEcCCCChH------HHHHHhccCCCCCCCcE--EEEEe
Q 001020 268 LRQKLFSEDES--LSVGIPNVGL--NFRGKR--LSRKKIIIVFDDVTCSE------QIKFLIGSLDWFTSGSR--IIITT 333 (1187)
Q Consensus 268 l~~~ll~~~~~--~~~~~~~~~~--~~~~~~--l~~kr~LlVLDDv~~~~------~l~~l~~~~~~~~~gsr--IIiTT 333 (1187)
+...+..++.. .+........ ...... -.++.++||||+++... .+..+....... ++++ +|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEE
Confidence 44444444311 0111100100 000112 23567999999997643 345554332221 3333 56666
Q ss_pred CChhhhhhc-------CcceeEEecCCCHHHHHHHHHHhhhCC---CCCCCchHHHHHHHHHHHhccCchhhHHHhhhh-
Q 001020 334 RDKQVLKNC-------RVDGIYEVEALLDYYALQLFSRHAFGQ---NQNADPSYKELSDRIIKFAQGVPLALKVLGCFL- 402 (1187)
Q Consensus 334 R~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~af~~---~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L- 402 (1187)
.+..+.... -....+.+++++.++..+++..++-.. ....++....+++......|..+.|+.++-.+.
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 654332221 112467899999999999998776321 111122222233333233455677777654332
Q ss_pred -c---CC---CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccC----CCCHHHHH----HHHHhcC
Q 001020 403 -F---GR---KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFK----GEDKDLVV----EFLDASG 467 (1187)
Q Consensus 403 -~---~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~~~~l~----~~~~~~g 467 (1187)
+ +. +.+..+.+++... .....-.+..||.++|.++..++.... ......+. .+....|
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 4556666666541 233455678999999988877664432 12222222 2222233
Q ss_pred Ccc------ccchHhhhcccccee
Q 001020 468 FSA------EIGISVLVDKSLIII 485 (1187)
Q Consensus 468 ~~~------~~~l~~L~~~sLi~~ 485 (1187)
..+ ..++..|.+.++|..
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEE
Confidence 321 234667777777764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.3e-09 Score=129.05 Aligned_cols=177 Identities=32% Similarity=0.419 Sum_probs=136.0
Q ss_pred ccceEeecCccccccchhhhccC-CCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcc
Q 001020 728 TIEELFLDGTAIEELPLSIECLS-RLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAV 806 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 806 (1187)
.++.|++.++.+..+|.....+. +|+.|++++|. +..+|..+..+++|+.|+++.|. +..+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheecc
Confidence 46677777788888887777774 88888888754 45555567788888888888854 55666666678888888888
Q ss_pred cCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccc
Q 001020 807 RSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 807 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 886 (1187)
+|.++.+|..+..+..|++|.++++..... +..+..+..+..|.+.+|.+..++..++.+++|+.|++++|.++.+
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~----~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIEL----LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceec----chhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 888888888777777788888888753322 3346777788888888888888888888888999999999999988
Q ss_pred cccccCCCCCCEEeecCCCCCCcCC
Q 001020 887 PTSIIHLTNLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 887 p~~l~~L~~L~~L~L~~c~~L~~lp 911 (1187)
+. +..+.+|+.|+++++.....+|
T Consensus 271 ~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 271 SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc-ccccCccCEEeccCccccccch
Confidence 87 8888999999998865444443
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=1.8e-09 Score=117.80 Aligned_cols=194 Identities=20% Similarity=0.253 Sum_probs=98.4
Q ss_pred ccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH---------
Q 001020 197 LIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ--------- 267 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~--------- 267 (1187)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-..++|+......... .+..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHH
Confidence 799999999999999754 246899999999999999999999874432244444332221110 0111
Q ss_pred -HHHHHhhccccCCC-----CCCcc-cc--c--hhhcccCCceEEEEEcCCCChH-------H----HHHHhccCCCCCC
Q 001020 268 -LRQKLFSEDESLSV-----GIPNV-GL--N--FRGKRLSRKKIIIVFDDVTCSE-------Q----IKFLIGSLDWFTS 325 (1187)
Q Consensus 268 -l~~~ll~~~~~~~~-----~~~~~-~~--~--~~~~~l~~kr~LlVLDDv~~~~-------~----l~~l~~~~~~~~~ 325 (1187)
+.+.+...+..... ..... .. . .....-.+++++||+||++... . +..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 11122222100000 00000 00 0 0000223456999999986554 1 2222222222 23
Q ss_pred CcEEEEEeCChhhhhh--------cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 326 GSRIIITTRDKQVLKN--------CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
.-.+|++.....+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3344555544433332 2333459999999999999998865333 211 12245668999999999988764
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=1.9e-10 Score=130.00 Aligned_cols=153 Identities=28% Similarity=0.427 Sum_probs=88.9
Q ss_pred ccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEccc
Q 001020 728 TIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVR 807 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 807 (1187)
.|+.|.|..|.+..+|..+.++..|.+|+|+.| .+..+|..++.|+ |+.|-+++ +++..+|+.++.+..|..|+.+.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh
Confidence 345555556667777777777777777777764 4556666666665 66666666 45667777777777777777777
Q ss_pred CcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccc
Q 001020 808 SSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 808 n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp 887 (1187)
|.|..+|+.++.+.+|+.|++..|..... ++.+..| .|..||+|.|++..||-++..|+.|++|.|.+|-+.+-|
T Consensus 176 nei~slpsql~~l~slr~l~vrRn~l~~l----p~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDL----PEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhhhhhhC----CHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 77777777666666555555555443331 1112211 244444444444444444444444444444444444444
Q ss_pred c
Q 001020 888 T 888 (1187)
Q Consensus 888 ~ 888 (1187)
.
T Consensus 251 A 251 (722)
T KOG0532|consen 251 A 251 (722)
T ss_pred H
Confidence 3
No 37
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=7.6e-09 Score=106.25 Aligned_cols=142 Identities=20% Similarity=0.294 Sum_probs=86.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC------CceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF------EGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRG 292 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~ 292 (1187)
|++.|.|.+|+||||+++.++.++.... ...+|+ ..+..... .....+.+.+.... .............
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~l~~~~---~~~~~~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDS-NNSRSLADLLFDQL---PESIAPIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhc-cccchHHHHHHHhh---ccchhhhHHHHHH
Confidence 5889999999999999999998765543 233333 44443332 21134444443332 1111111111111
Q ss_pred cccCCceEEEEEcCCCChHH---------HHHHh-ccCCC-CCCCcEEEEEeCChhh---hhhcCcceeEEecCCCHHHH
Q 001020 293 KRLSRKKIIIVFDDVTCSEQ---------IKFLI-GSLDW-FTSGSRIIITTRDKQV---LKNCRVDGIYEVEALLDYYA 358 (1187)
Q Consensus 293 ~~l~~kr~LlVLDDv~~~~~---------l~~l~-~~~~~-~~~gsrIIiTTR~~~v---~~~~~~~~~~~l~~L~~~ea 358 (1187)
.....+++++|||++++... +..+. ..+.. ..++.+||||+|.... .........+++++|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 23467899999999965433 11222 22221 2578999999999765 22334446899999999999
Q ss_pred HHHHHHh
Q 001020 359 LQLFSRH 365 (1187)
Q Consensus 359 ~~Lf~~~ 365 (1187)
.+++.++
T Consensus 156 ~~~~~~~ 162 (166)
T PF05729_consen 156 KQYLRKY 162 (166)
T ss_pred HHHHHHH
Confidence 9998765
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2.9e-09 Score=126.05 Aligned_cols=188 Identities=30% Similarity=0.425 Sum_probs=84.6
Q ss_pred EeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCC-CccEEecCCCCCcccccccccCCCcccEEEccCccCC
Q 001020 618 LEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLAS-NIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCI 696 (1187)
Q Consensus 618 L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~-~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l 696 (1187)
|.+..+.+......+..+.++..|++.++.+....+....+. +|+.|++++| .+..+|..++.+++|+.|++++|. +
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-h
Confidence 444444443333333444455555555554333322333332 5555555552 334444445555555555555544 3
Q ss_pred cccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCC
Q 001020 697 KSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKS 775 (1187)
Q Consensus 697 ~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 775 (1187)
..+|... .+++|+. |++++|.+..+|..++.+..|+.|.+++|. ....+..+.++.+
T Consensus 176 ~~l~~~~~~~~~L~~---------------------L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~ 233 (394)
T COG4886 176 SDLPKLLSNLSNLNN---------------------LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKN 233 (394)
T ss_pred hhhhhhhhhhhhhhh---------------------eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccc
Confidence 3344333 3344443 344445555555544444445555555543 2222333444444
Q ss_pred CCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEcccc
Q 001020 776 LQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERY 831 (1187)
Q Consensus 776 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~ 831 (1187)
+..|.+.++ .+..++..++.+.+|+.|++++|.+..++. +..+.+|+.|+++++
T Consensus 234 l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 234 LSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccCCc-eeeeccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 554444332 222334444555555555555555555444 444444444444433
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.87 E-value=2.5e-08 Score=126.48 Aligned_cols=306 Identities=17% Similarity=0.199 Sum_probs=180.5
Q ss_pred CccchHHHHHHHHHhhccC-CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCc---eEE------------EEechhhh
Q 001020 196 DLIGVESSIRQIESLLSTG-SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG---SYF------------LQNVREES 259 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~------------~~~~~~~~ 259 (1187)
.++||+.+++.|...+... .+...++.+.|..|||||+|+++|...+..++.. ..| +..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3799999999999988653 3446799999999999999999999976555211 111 11111110
Q ss_pred cc-----cCChHHHHHHHhhccccCCCCCCcc-----------------ccc---hh----------hcccCCceEEEEE
Q 001020 260 ER-----TGGLSQLRQKLFSEDESLSVGIPNV-----------------GLN---FR----------GKRLSRKKIIIVF 304 (1187)
Q Consensus 260 ~~-----~~~l~~l~~~ll~~~~~~~~~~~~~-----------------~~~---~~----------~~~l~~kr~LlVL 304 (1187)
.. .........+++..+...+....+. ... .+ ....+.+++++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 00 0011112222222211111000000 000 00 0034567999999
Q ss_pred cCC-CChHH----HHHHhccCC--C-CCCCcEEEEEeCCh--hhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCC
Q 001020 305 DDV-TCSEQ----IKFLIGSLD--W-FTSGSRIIITTRDK--QVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNAD 374 (1187)
Q Consensus 305 DDv-~~~~~----l~~l~~~~~--~-~~~gsrIIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 374 (1187)
||+ |-... ++.++.... . .....-.+.|.+.. .+.........+.+.+|+..+...|...........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 999 33322 444443332 0 00112223333332 111122333689999999999999998876542222
Q ss_pred chHHHHHHHHHHHhccCchhhHHHhhhhcCC-------CHHHHHHHHHHhhcCCC-chHHHHHHHhcCCCCHHHHHHHhh
Q 001020 375 PSYKELSDRIIKFAQGVPLALKVLGCFLFGR-------KMEDWESAANKLKKVPH-LDIQKVLKASYDGLDDEEQNIFLD 446 (1187)
Q Consensus 375 ~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl~ 446 (1187)
..+..+.|+++..|+|+.+..+-..+... +...|..-...+..... +.+.+.+..-.+.||...|+++-.
T Consensus 239 --~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 239 --PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred --cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 23678899999999999999999888653 34456655554443322 235556888899999999999999
Q ss_pred hhcccCCCCHHHHHHHHHhcCCc-cccchHhhhccccceee---------CC---EEEehHhhhhhhhhhhcc
Q 001020 447 IACFFKGEDKDLVVEFLDASGFS-AEIGISVLVDKSLIIIL---------KN---KIIMHDLLQGMGREIVRQ 506 (1187)
Q Consensus 447 la~f~~~~~~~~l~~~~~~~g~~-~~~~l~~L~~~sLi~~~---------~~---~~~mHdll~~~~~~i~~~ 506 (1187)
.||+.+.++.+.+..++...... +....+.|.. ++|.+. .. +-..|+.+|+.+-...-+
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999999888887754332 2233344443 333331 11 226789998888765543
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.3e-10 Score=131.29 Aligned_cols=188 Identities=23% Similarity=0.311 Sum_probs=161.4
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCc
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSS 809 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~ 809 (1187)
...+|+.|.+.++|..+..+..|+.|.|..| .+..+|..++++..|..|+|+.| .+..+|..+..++ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence 3677888999999999999999999999874 46788999999999999999995 5677888877775 8999999999
Q ss_pred ccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccccc
Q 001020 810 IRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTS 889 (1187)
Q Consensus 810 i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~ 889 (1187)
++.+|..++.+..|..|+.+.|...+. .+.+.++.+|+.|.+..|++..+|..+..| .|..||+++|++..||..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~sl----psql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSL----PSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhc----hHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh
Confidence 999999999999999999999987653 334889999999999999999999999854 689999999999999999
Q ss_pred ccCCCCCCEEeecCCCCCCcCCC------CCCCCCeeeccccc
Q 001020 890 IIHLTNLFLLKLSYCERLQSLPE------LPCNISDMDANCCT 926 (1187)
Q Consensus 890 l~~L~~L~~L~L~~c~~L~~lp~------l~~sL~~L~i~~C~ 926 (1187)
|.++..|++|.|.+|+ |++-|. .-.-.++|++.-|.
T Consensus 230 fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 9999999999999755 666552 22345778888884
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1e-09 Score=114.32 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEE
Q 001020 774 KSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNL 853 (1187)
Q Consensus 774 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L 853 (1187)
+.|++|+|++|. +..+.+...-++.++.|+++.|.|..+.. +..+++|+.|+|++|......|.. ..+-+.+.|
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh----~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWH----LKLGNIKTL 357 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhH----hhhcCEeee
Confidence 345555555532 23333444444555555555555554433 455555555555555443322211 123445556
Q ss_pred eccCCCCCCcccccCCCCCCcEEECccCCCccccc--cccCCCCCCEEeecCCC
Q 001020 854 NLSDCGITELPNSLGQLSSLHILFRDRNNFERIPT--SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 854 ~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~~L~L~~c~ 905 (1187)
.|++|.+.++ ..++.+-+|..|++++|+|..+.+ +|++||.|+.|.|.+||
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 6666555443 234556677777777777776654 67778888888887765
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.80 E-value=1.1e-07 Score=113.88 Aligned_cols=292 Identities=13% Similarity=0.144 Sum_probs=179.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
|..+.+.|-|..-+..+.+. .+.|.+.|..++|-|||||+-+... ....=..+.|+..-.+. .....+.+
T Consensus 15 P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~d----ndp~rF~~ 84 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESD----NDPARFLS 84 (894)
T ss_pred CCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCcc----CCHHHHHH
Confidence 44456778787766655542 3679999999999999999999887 44455678888533222 33445555
Q ss_pred HHhhccccCCCCCCccccchhh-----------------cccCCceEEEEEcCCCCh------HHHHHHhccCCCCCCCc
Q 001020 271 KLFSEDESLSVGIPNVGLNFRG-----------------KRLSRKKIIIVFDDVTCS------EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~-----------------~~l~~kr~LlVLDDv~~~------~~l~~l~~~~~~~~~gs 327 (1187)
.++..++..-+...+....... ..-..++..+||||..-. +.++.+... ..++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCe
Confidence 5554432111111111000000 022356899999997432 225555544 34788
Q ss_pred EEEEEeCChhhhhhc---CcceeEEec----CCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhh
Q 001020 328 RIIITTRDKQVLKNC---RVDGIYEVE----ALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGC 400 (1187)
Q Consensus 328 rIIiTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~ 400 (1187)
..|+|||...-+..- -.+...++. .++.+|+.++|...... + -...-++.+.++.+|-+-|+..++=
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~---Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL---P---LDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC---C---CChHHHHHHHhhcccHHHHHHHHHH
Confidence 999999996322110 112344554 58999999999877521 1 1124578899999999999999887
Q ss_pred hhcCC-CHHHHHHHHHHhhcCCCchHHH-HHHHhcCCCCHHHHHHHhhhhcccCCCCHHHHHHHHHhcCCccccchHhhh
Q 001020 401 FLFGR-KMEDWESAANKLKKVPHLDIQK-VLKASYDGLDDEEQNIFLDIACFFKGEDKDLVVEFLDASGFSAEIGISVLV 478 (1187)
Q Consensus 401 ~L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~ 478 (1187)
.+++. +.+.- +..+... ...|.+ ...--+|.||++.|..++.+|++.. +.-+....+.... .....++.|.
T Consensus 236 a~~~~~~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~ 308 (894)
T COG2909 236 ALRNNTSAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELE 308 (894)
T ss_pred HccCCCcHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHH
Confidence 77632 32221 1111111 112222 2234578999999999999998843 2333333333221 2445588899
Q ss_pred ccccceee----CCEEEehHhhhhhhhhhhcccc
Q 001020 479 DKSLIIIL----KNKIIMHDLLQGMGREIVRQES 508 (1187)
Q Consensus 479 ~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~ 508 (1187)
.++|+.+. ++.|..|.++.+|-+.-...+.
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 99987643 6789999999999998776543
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-09 Score=120.35 Aligned_cols=131 Identities=24% Similarity=0.226 Sum_probs=68.7
Q ss_pred ccCCCcEEeccCCCCCc-ccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEE
Q 001020 748 CLSRLITLNLENCSRLE-CLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRL 826 (1187)
Q Consensus 748 ~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L 826 (1187)
.++.|+.|.|+.|.... .+...+..+|+|+.|+|..|..+..-......++.|+.|+|++|++...+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~----------- 263 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ----------- 263 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-----------
Confidence 34555555555554432 222233455666666666654322222223334555566666555554441
Q ss_pred EccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC--cccc-----cCCCCCCcEEECccCCCccccc--cccCCCCCC
Q 001020 827 SFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE--LPNS-----LGQLSSLHILFRDRNNFERIPT--SIIHLTNLF 897 (1187)
Q Consensus 827 ~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~--l~~~-----l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~ 897 (1187)
.+....++.|+.|+++.|++.+ +|+. ...+++|+.|+++.|++..+++ .+..+++|+
T Consensus 264 --------------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 264 --------------GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred --------------ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 2223444555555555555554 2322 3456777778877777766654 455666777
Q ss_pred EEeecC
Q 001020 898 LLKLSY 903 (1187)
Q Consensus 898 ~L~L~~ 903 (1187)
.|.+..
T Consensus 330 ~l~~~~ 335 (505)
T KOG3207|consen 330 HLRITL 335 (505)
T ss_pred hhhccc
Confidence 776654
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.4e-09 Score=119.65 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=74.0
Q ss_pred ccccEEEcccCccc--ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc--cccCCCCCC
Q 001020 798 EALMEMKAVRSSIR--ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP--NSLGQLSSL 873 (1187)
Q Consensus 798 ~~L~~L~l~~n~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~--~~l~~l~~L 873 (1187)
+.|+.|.+++|+++ .+-..+..+|+|+.|.+..|.... ........++.|++|+|++|++.+.+ ...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---eecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 44455555555544 333444556777777777664211 11222455678999999999999877 667899999
Q ss_pred cEEECccCCCccc--ccc-----ccCCCCCCEEeecCCCC
Q 001020 874 HILFRDRNNFERI--PTS-----IIHLTNLFLLKLSYCER 906 (1187)
Q Consensus 874 ~~L~L~~n~l~~l--p~~-----l~~L~~L~~L~L~~c~~ 906 (1187)
+.|+++.|.+.++ |.. ...+++|++|+++.|+-
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 9999999999855 443 46799999999999653
No 45
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.75 E-value=4.7e-07 Score=106.03 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=133.8
Q ss_pred CCCCCccchHHHHHHHHHhhcc--CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC------ceEEEEechhhhcccC
Q 001020 192 TDNKDLIGVESSIRQIESLLST--GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE------GSYFLQNVREESERTG 263 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~~~ 263 (1187)
..++.++||+.++++|...|.. .......+.|+|++|+|||++++++++.+..... ..+|+.+ ... .
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~-~~~----~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC-QIL----D 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC-CCC----C
Confidence 3556899999999999998863 1233457899999999999999999987653322 2344432 222 2
Q ss_pred ChHHHHHHHhhcccc----CCCCCCcccc--chhhccc--CCceEEEEEcCCCChH-----HHHHHhccCCC-CC--CCc
Q 001020 264 GLSQLRQKLFSEDES----LSVGIPNVGL--NFRGKRL--SRKKIIIVFDDVTCSE-----QIKFLIGSLDW-FT--SGS 327 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~----~~~~~~~~~~--~~~~~~l--~~kr~LlVLDDv~~~~-----~l~~l~~~~~~-~~--~gs 327 (1187)
....+...+..++.. .+........ ......+ .+++++||||+++... .+..+...... .. ...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 222333334333310 0110000000 0011122 4668999999997661 13333322111 11 233
Q ss_pred EEEEEeCChhhhhhc------C-cceeEEecCCCHHHHHHHHHHhhhCC--CCCCCchHHHHHHHHHHHhccCch-hhHH
Q 001020 328 RIIITTRDKQVLKNC------R-VDGIYEVEALLDYYALQLFSRHAFGQ--NQNADPSYKELSDRIIKFAQGVPL-ALKV 397 (1187)
Q Consensus 328 rIIiTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~af~~--~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 397 (1187)
.+|.+|......... . ....+.+++++.+|..+++..++-.. .....++..+.+.+++....|.|- |+.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 455555544322111 1 12468899999999999998876311 111133334455566777778874 3333
Q ss_pred Hhhhh--c---C---CCHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhc
Q 001020 398 LGCFL--F---G---RKMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIAC 449 (1187)
Q Consensus 398 ~g~~L--~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~ 449 (1187)
+-.+. + + -+.+..+.+.+.+. .....-....||.+++.++..++.
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22211 1 1 24455555555442 233445667899888877776654
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.75 E-value=4.5e-10 Score=120.49 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=90.7
Q ss_pred CCCCCCCEEeccCCCCCccCC-----cccCCcccccEEEcccCccc-----ccchhhhcCCCCCEEEccccCCCCcCCcc
Q 001020 771 CKLKSLQHLNLFGCTKVERLP-----DEFGNLEALMEMKAVRSSIR-----ELPSSIVQLNNLYRLSFERYQGKSHMGLR 840 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~lp-----~~l~~l~~L~~L~l~~n~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 840 (1187)
.+-+.|+.+...+|. +...+ ..+...+.|+.+.+..|.|. -+-..+..+++|+.|+|.+|......+..
T Consensus 154 ~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 344566666665543 32222 34555667777777777665 23346677888888888888765543332
Q ss_pred CCC-CCCCCCccEEeccCCCCCC-----ccccc-CCCCCCcEEECccCCCc-----cccccccCCCCCCEEeecCCC
Q 001020 841 LPT-MSGLRILTNLNLSDCGITE-----LPNSL-GQLSSLHILFRDRNNFE-----RIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 841 l~~-l~~l~~L~~L~Ls~~~l~~-----l~~~l-~~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
+.. ++.+++|+.|++++|.+.+ +...+ ...|+|+.|.|.+|.++ .+-.++...+.|..|+|++|.
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 222 6677889999999998875 33333 45789999999999887 344456778899999999874
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=9.6e-10 Score=120.34 Aligned_cols=285 Identities=22% Similarity=0.307 Sum_probs=141.8
Q ss_pred CccEEEcCCCCCCcccCC---CCCCCCccEEecCCCCCccccc--ccccCCCcccEEEccCccCCcccCcc-c--ccccc
Q 001020 637 NLKYMDLSHSKQLTEIPD---LSLASNIEKLNLDGCSSLLEIH--PSIKYLNKLAILSLRHCKCIKSLPTS-I--HLESL 708 (1187)
Q Consensus 637 ~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~~--~~i~~L~~L~~L~L~~c~~l~~lp~~-~--~l~~L 708 (1187)
.||.|.|.++.-...-+- ...++|+++|.+.+|..+.... .--.++++|++|+|..|..++...-. + ++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455666666654433331 4567788888888877554321 11246778888888887776654322 2 47888
Q ss_pred ceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCc--ccccccCCCCCCCEEeccCCCC
Q 001020 709 KQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLE--CLSSSLCKLKSLQHLNLFGCTK 786 (1187)
Q Consensus 709 ~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~~~~ 786 (1187)
++|++++|..+.. ++++.+ ..++.+|+.+.+++|..+. .+-..-+...-+.++++..|..
T Consensus 219 ~~lNlSwc~qi~~---------------~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 219 KYLNLSWCPQISG---------------NGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHhhhccCchhhc---------------CcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 8888888875543 222211 2233334444444443322 1111112233344444444443
Q ss_pred CccCC--cccCCcccccEEEcccCc-cccc--chhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCC
Q 001020 787 VERLP--DEFGNLEALMEMKAVRSS-IREL--PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGIT 861 (1187)
Q Consensus 787 l~~lp--~~l~~l~~L~~L~l~~n~-i~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 861 (1187)
+.... ..-..+..|+.|+.+++. +... -.-..+..+|+.|-+..|...+..+...- -.+++.|+.|++..|.+.
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLI 359 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhccccccee
Confidence 32221 111223445555554432 1111 11224557777777777776554332111 234566777777776544
Q ss_pred C---cccccCCCCCCcEEECccCCCc------cccccccCCCCCCEEeecCCCCCCcCCCCCCCCCeeeccccccccccc
Q 001020 862 E---LPNSLGQLSSLHILFRDRNNFE------RIPTSIIHLTNLFLLKLSYCERLQSLPELPCNISDMDANCCTSLKELS 932 (1187)
Q Consensus 862 ~---l~~~l~~l~~L~~L~L~~n~l~------~lp~~l~~L~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l~ 932 (1187)
. +-..-.+++.|+.|.|++|... .+..+-..+..|..|.|++|+.+..- .|+.|
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-----~Le~l------------ 422 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-----TLEHL------------ 422 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-----HHHHH------------
Confidence 2 2222245566666666654322 11223344455555555555544321 11111
Q ss_pred CCccccCCCCCCCCceeeecCCCCChHHHHHH
Q 001020 933 GLSILFTPTTWNSQGLNFINCFNLDGDELKEI 964 (1187)
Q Consensus 933 ~~~~~~~~~~~~l~~L~~~~C~~L~~~~~~~i 964 (1187)
...+.++.+++.+|...+..++...
T Consensus 423 -------~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 423 -------SICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred -------hhCcccceeeeechhhhhhhhhHHH
Confidence 2233455577888988877765554
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=4.9e-09 Score=109.42 Aligned_cols=223 Identities=20% Similarity=0.189 Sum_probs=126.5
Q ss_pred cccCCccEEEcCCCCCC--------cccC-CCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccc
Q 001020 633 QQLVNLKYMDLSHSKQL--------TEIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI 703 (1187)
Q Consensus 633 ~~l~~L~~L~Ls~~~~l--------~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~ 703 (1187)
..+..|++|..+..+.- ..+| +++-+.+|+.+.++.|..- .+-.-...-+.|+++...+.. +...|...
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~-~~~~~~l~ 256 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTT-IQDVPSLL 256 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccc-cccccccc
Confidence 34567888877764321 1122 3556677777777776421 111111223556666665422 22222222
Q ss_pred cccccceeeccccCCC----CcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEE
Q 001020 704 HLESLKQLFLSGCSNL----NTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHL 779 (1187)
Q Consensus 704 ~l~~L~~L~Ls~c~~l----~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 779 (1187)
-...+..+.-+.-... ...-+....|++|+|++|.|+.+..++.-++.++.|+++.|.....- ++..|
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L------ 328 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAEL------ 328 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhc------
Confidence 2222222211110000 00001123477788888888888777777777777777776443221 13344
Q ss_pred eccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCC
Q 001020 780 NLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCG 859 (1187)
Q Consensus 780 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~ 859 (1187)
++|+.||+++|.++++..+-..+.+.+.|.|++|...+ +..+..+.+|..||+++|+
T Consensus 329 ------------------~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~-----LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 329 ------------------PQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET-----LSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred ------------------ccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh-----hhhhHhhhhheeccccccc
Confidence 44555555555555555555555666666666655433 3345677889999999999
Q ss_pred CCCc--ccccCCCCCCcEEECccCCCccccc
Q 001020 860 ITEL--PNSLGQLSSLHILFRDRNNFERIPT 888 (1187)
Q Consensus 860 l~~l--~~~l~~l~~L~~L~L~~n~l~~lp~ 888 (1187)
+.++ ...++++|.|+.|.|.+|.+..+|.
T Consensus 386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 386 IEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8864 3678999999999999999987775
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=98.67 E-value=2.6e-07 Score=99.89 Aligned_cols=150 Identities=15% Similarity=0.253 Sum_probs=93.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
.+.+.|||++|+|||+||+++++....+...+.|+... .. ......+... + .
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~-------~~~~~~~~~~-------------------~-~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS-------QYFSPAVLEN-------------------L-E 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh-------hhhhHHHHhh-------------------c-c
Confidence 35789999999999999999999876666666776421 10 0000111111 1 1
Q ss_pred ceEEEEEcCCCCh---HHHH-HHhccCCCC-CCCcEEEEEeCC----------hhhhhhcCcceeEEecCCCHHHHHHHH
Q 001020 298 KKIIIVFDDVTCS---EQIK-FLIGSLDWF-TSGSRIIITTRD----------KQVLKNCRVDGIYEVEALLDYYALQLF 362 (1187)
Q Consensus 298 kr~LlVLDDv~~~---~~l~-~l~~~~~~~-~~gsrIIiTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~~Lf 362 (1187)
+.-+|||||++.. .+|+ .+...+... ..|+++||+|.+ +.+...++....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 2348999999763 3333 222222111 246666555444 245555555678999999999999999
Q ss_pred HHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 363 SRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 363 ~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.+.++......+ .+...-|++++.|..-++..+
T Consensus 171 ~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 171 QRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 999875543322 366677788877766555443
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=8.4e-09 Score=104.69 Aligned_cols=124 Identities=23% Similarity=0.266 Sum_probs=46.7
Q ss_pred ccccEEEcccCcccccchhhh-cCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccccc-CCCCCCcE
Q 001020 798 EALMEMKAVRSSIRELPSSIV-QLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSL-GQLSSLHI 875 (1187)
Q Consensus 798 ~~L~~L~l~~n~i~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l-~~l~~L~~ 875 (1187)
.++++|+|.+|.|+.+. .++ .+.+|+.|++++|.... ++.+..++.|+.|++++|+++++...+ ..+++|+.
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-----l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-----LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-----ccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34566666666666553 233 45666666666666554 344667888999999999999987655 46899999
Q ss_pred EECccCCCccccc--cccCCCCCCEEeecCCCCCCcCCCCCCCCCeeeccccccccccc
Q 001020 876 LFRDRNNFERIPT--SIIHLTNLFLLKLSYCERLQSLPELPCNISDMDANCCTSLKELS 932 (1187)
Q Consensus 876 L~L~~n~l~~lp~--~l~~L~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l~ 932 (1187)
|+|++|+|..+.. .+..+++|+.|+|.+||-... + .-+...+..||+|+.|.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~----~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K----NYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T----THHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h----hHHHHHHHHcChhheeC
Confidence 9999999987654 567899999999999874322 2 22333444455555544
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.64 E-value=1.6e-07 Score=106.53 Aligned_cols=165 Identities=20% Similarity=0.281 Sum_probs=83.1
Q ss_pred hhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccC-cccccchhhhcCCCCC
Q 001020 746 IECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRS-SIRELPSSIVQLNNLY 824 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n-~i~~lp~~l~~l~~L~ 824 (1187)
+..+.+++.|++++| .++.+|. -..+|++|.+++|..+..+|..+ ..+|+.|++++| .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~--------- 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE--------- 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc---------
Confidence 334566666666666 4555551 22356666666666666555433 134555555444 3333332
Q ss_pred EEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCC---ccccccccCC-CCCCEEe
Q 001020 825 RLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNF---ERIPTSIIHL-TNLFLLK 900 (1187)
Q Consensus 825 ~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l---~~lp~~l~~L-~~L~~L~ 900 (1187)
+|+.|+++.+....++ .-+++|+.|.+.+++. ..+|. .| ++|+.|+
T Consensus 113 ------------------------sLe~L~L~~n~~~~L~---~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~ 162 (426)
T PRK15386 113 ------------------------SVRSLEIKGSATDSIK---NVPNGLTSLSINSYNPENQARIDN---LISPSLKTLS 162 (426)
T ss_pred ------------------------ccceEEeCCCCCcccc---cCcchHhheecccccccccccccc---ccCCcccEEE
Confidence 2333333333222111 0113455555543221 11111 12 5688888
Q ss_pred ecCCCCCCcCCCCCCCCCeeeccccc--ccccccCCccccCCCCCCCCceeeecCCCCChHHHH
Q 001020 901 LSYCERLQSLPELPCNISDMDANCCT--SLKELSGLSILFTPTTWNSQGLNFINCFNLDGDELK 962 (1187)
Q Consensus 901 L~~c~~L~~lp~l~~sL~~L~i~~C~--~L~~l~~~~~~~~~~~~~l~~L~~~~C~~L~~~~~~ 962 (1187)
+++|..+...+.+|.+|+.|.+..+. +++-.. ..+ | ..+ .|.+.+|.+++.+.+.
T Consensus 163 Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~---~sL-P--~nl-~L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 163 LTGCSNIILPEKLPESLQSITLHIEQKTTWNISF---EGF-P--DGL-DIDLQNSVLLSPDVFK 219 (426)
T ss_pred ecCCCcccCcccccccCcEEEecccccccccCcc---ccc-c--ccc-EechhhhcccCHHHhh
Confidence 88887665333578888888876642 222211 111 1 223 6788888888766543
No 52
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.63 E-value=1.2e-06 Score=97.79 Aligned_cols=177 Identities=16% Similarity=0.077 Sum_probs=100.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccc--hh----
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLN--FR---- 291 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~--~~---- 291 (1187)
..++.|+|++|+||||+++.+++.+...=-..+++.... .....+...+....+ .+......... ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~------~~~~~~l~~i~~~lG-~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTR------VDAEDLLRMVAADFG-LETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCC------CCHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999987652211122222111 223344444444321 11111110000 00
Q ss_pred -hcccCCceEEEEEcCCCChH--HHHHHhccCC---CCCCCcEEEEEeCChhhhhhc----------CcceeEEecCCCH
Q 001020 292 -GKRLSRKKIIIVFDDVTCSE--QIKFLIGSLD---WFTSGSRIIITTRDKQVLKNC----------RVDGIYEVEALLD 355 (1187)
Q Consensus 292 -~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~---~~~~gsrIIiTTR~~~v~~~~----------~~~~~~~l~~L~~ 355 (1187)
.....+++.++|+||++... .++.+..... .......|++|.... ..... .....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 11236788999999998753 3554432211 112233455655432 11111 1234688999999
Q ss_pred HHHHHHHHHhhhCCCCCC-CchHHHHHHHHHHHhccCchhhHHHhhhh
Q 001020 356 YYALQLFSRHAFGQNQNA-DPSYKELSDRIIKFAQGVPLALKVLGCFL 402 (1187)
Q Consensus 356 ~ea~~Lf~~~af~~~~~~-~~~~~~l~~~i~~~~~GlPLal~~~g~~L 402 (1187)
+|..+++...+....... ..-..+..+.|++.++|.|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887654322110 11234788899999999999999988775
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.59 E-value=2.7e-07 Score=101.81 Aligned_cols=150 Identities=23% Similarity=0.340 Sum_probs=96.8
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhccc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRL 295 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l 295 (1187)
+.+.....||++|+||||||+.++......|...- ....+++++++.+-... ..+.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkdlr~i~e~a~---------------~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKDLREIIEEAR---------------KNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHHHHHHHHHHH---------------HHHh
Confidence 34667779999999999999999998777764321 11255666665543221 1244
Q ss_pred CCceEEEEEcCCC--ChHHHHHHhccCCCCCCCcEEEE--EeCChhhhh---hcCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 296 SRKKIIIVFDDVT--CSEQIKFLIGSLDWFTSGSRIII--TTRDKQVLK---NCRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 296 ~~kr~LlVLDDv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
.+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||.++...- ......++++++|+.++-.+++.+.+-.
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 5899999999995 455667777654 36777776 666652211 1133568999999999999999884432
Q ss_pred CCCCCC---c-hHHHHHHHHHHHhccCc
Q 001020 369 QNQNAD---P-SYKELSDRIIKFAQGVP 392 (1187)
Q Consensus 369 ~~~~~~---~-~~~~l~~~i~~~~~GlP 392 (1187)
...... . -..+....+++.++|--
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 221111 1 12345567777777754
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=6.2e-08 Score=98.41 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCCCCCCCcccccccceEeCcCCCccccccccc-ccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccc
Q 001020 601 YPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQ-QLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSI 679 (1187)
Q Consensus 601 ~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i 679 (1187)
+-++..|...++.++++|+|.+|.|+.+. .+. .+.+|+.|+|++|. ++.++.+..+++|++|++++|. +..+...+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHH
T ss_pred ccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccch
Confidence 34555555566667777777777777763 344 56777788887776 3445566777777777777753 33443333
Q ss_pred -cCCCcccEEEccCcc
Q 001020 680 -KYLNKLAILSLRHCK 694 (1187)
Q Consensus 680 -~~L~~L~~L~L~~c~ 694 (1187)
..+++|+.|++++|+
T Consensus 84 ~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK 99 (175)
T ss_dssp HHH-TT--EEE-TTS-
T ss_pred HHhCCcCCEEECcCCc
Confidence 346667777776654
No 55
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.52 E-value=3.9e-07 Score=100.16 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=101.1
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHhhCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccc-------
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASS------- 87 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s------- 87 (1187)
.+.+.|||||||.. +-...++-+.-.|.-+|++||+|- ++..|+ +.+.+.+.|+.++.+|.|+|||....
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 34679999999876 446789999999999999999998 777776 55689999999999999999997543
Q ss_pred -hhHHHHHHHHHHhccccCCCceEEeEEEEeccccccccccchhhHHHHHHHHhcCChHHHHHHHHHHHhcccccCcccc
Q 001020 88 -RWCLEEIVKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKLEERFMEWPEKLESWRIALREAANLSGFASH 166 (1187)
Q Consensus 88 -~~c~~el~~~~~~~~~~~~~~~v~pvfy~vdp~~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~aL~~~a~~~g~~~~ 166 (1187)
.|.-.|++-+++|.+ .++|||-. ||+ |. ++-......+..+....|...
T Consensus 687 eDWVHKEl~~Afe~~K------NIiPI~D~---------------aFE-----~P---t~ed~iPnDirmi~kyNGvKW- 736 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK------NIIPIFDT---------------AFE-----FP---TKEDQIPNDIRMITKYNGVKW- 736 (832)
T ss_pred HHHHHHHHHHHHHhcC------Ceeeeecc---------------ccc-----CC---CchhcCcHHHHHHHhccCeee-
Confidence 488889999999988 79999822 110 00 000011111222333344332
Q ss_pred ccchhhHHHHHHHHHHHHhhccccc
Q 001020 167 AIRPESLLIEKIVGEILKRLNDMYR 191 (1187)
Q Consensus 167 ~~~~e~~~i~~i~~~i~~~l~~~~~ 191 (1187)
...++...+++++.-|.-+++.+.|
T Consensus 737 vHdYQdA~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 737 VHDYQDACMAKVVRFITGELNRTTP 761 (832)
T ss_pred ehhhHHHHHHHHHHHHhccccCCCC
Confidence 2245556788888888877777654
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=5.5e-09 Score=112.26 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=84.8
Q ss_pred cCCCcEEeccCCCCCc----ccccccCCCCCCCEEeccCCCCCc----cCCcccCCcccccEEEcccCccc-----ccch
Q 001020 749 LSRLITLNLENCSRLE----CLSSSLCKLKSLQHLNLFGCTKVE----RLPDEFGNLEALMEMKAVRSSIR-----ELPS 815 (1187)
Q Consensus 749 l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~-----~lp~ 815 (1187)
-++|+++...+|..-. .+...+...+.|+.+.++.|.... .+-..+..+++|+.|||..|.++ .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3455555555433211 222334455666666666554321 22344666777777777777766 3344
Q ss_pred hhhcCCCCCEEEccccCCCCcCCccCCC--CCCCCCccEEeccCCCCCC-----cccccCCCCCCcEEECccCCCc
Q 001020 816 SIVQLNNLYRLSFERYQGKSHMGLRLPT--MSGLRILTNLNLSDCGITE-----LPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 816 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
.+..+++|+.|++++|...+.-...+-. -...|+|+.|.|.+|.++. +...+...+.|+.|+|++|++.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5667788899999888765532111111 2347899999999999884 4455566899999999999983
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8e-09 Score=108.12 Aligned_cols=177 Identities=27% Similarity=0.358 Sum_probs=120.6
Q ss_pred cccceEeCcCCCcc--cccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCccccccc--ccCCCcccE
Q 001020 613 ENLIALEMPHSSVE--KLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPS--IKYLNKLAI 687 (1187)
Q Consensus 613 ~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~--i~~L~~L~~ 687 (1187)
..|++|||+++.|+ ++..-++.+.+|+.|.|.+++....+-. +.+-.+|+.|+|++|+.+.+..-. +.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34778888888876 4444457888899999988876554443 777888999999988877654432 567778888
Q ss_pred EEccCccCCcccCccc--c-ccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCc
Q 001020 688 LSLRHCKCIKSLPTSI--H-LESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLE 764 (1187)
Q Consensus 688 L~L~~c~~l~~lp~~~--~-l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~ 764 (1187)
|||+.|......-..+ + -++|..|+|+||... + ....+..-...+++|..|||++|..++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--------------l---~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--------------L---QKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--------------h---hhhHHHHHHHhCCceeeeccccccccC
Confidence 8888776544432222 2 456667777765421 0 112233335688999999999988776
Q ss_pred c-cccccCCCCCCCEEeccCCCCCccCCc---ccCCcccccEEEcccC
Q 001020 765 C-LSSSLCKLKSLQHLNLFGCTKVERLPD---EFGNLEALMEMKAVRS 808 (1187)
Q Consensus 765 ~-lp~~l~~l~~L~~L~L~~~~~l~~lp~---~l~~l~~L~~L~l~~n 808 (1187)
. ....|.+++.|++|.++.|..+ .|+ .+..+++|.+|++.++
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 3 3345778999999999999865 232 3566777888877654
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=7.6e-07 Score=101.05 Aligned_cols=70 Identities=26% Similarity=0.549 Sum_probs=46.8
Q ss_pred cceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccC
Q 001020 729 IEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRS 808 (1187)
Q Consensus 729 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n 808 (1187)
++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++..+
T Consensus 54 l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 54 SGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred CCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCC
Confidence 4455555555666652 23467888888888887777655 35888888888877776664 4666767665
Q ss_pred c
Q 001020 809 S 809 (1187)
Q Consensus 809 ~ 809 (1187)
.
T Consensus 123 ~ 123 (426)
T PRK15386 123 A 123 (426)
T ss_pred C
Confidence 4
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.44 E-value=2.5e-06 Score=92.62 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=102.3
Q ss_pred CCcc--chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHH
Q 001020 195 KDLI--GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKL 272 (1187)
Q Consensus 195 ~~~v--Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~l 272 (1187)
++|+ +.+..++++.+++.. ...+.|.|+|++|+|||+||++++++........+|+. ....... . ..+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~-~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------D-PEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------H-HHH
Confidence 4555 245566777777642 23468899999999999999999987655444455553 3222111 0 111
Q ss_pred hhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---H-HHHHhccCCC-CCCCcEEEEEeCChh---------h
Q 001020 273 FSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---Q-IKFLIGSLDW-FTSGSRIIITTRDKQ---------V 338 (1187)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~~---------v 338 (1187)
+.. +. +.-+||+||++... . .+.+...+.. ...+.++|+||+... +
T Consensus 85 ~~~-------------------~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 85 LEG-------------------LE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred Hhh-------------------cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 110 11 12379999996542 1 2333322211 123458899887532 1
Q ss_pred hhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhh
Q 001020 339 LKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGC 400 (1187)
Q Consensus 339 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~ 400 (1187)
...+.....+++++++.++...++...+-....+.+ .+..+.+++.++|+|..+..+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 112222457999999999999998876533222212 35667788888999887776643
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.41 E-value=8.3e-06 Score=96.50 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=107.1
Q ss_pred CCCCCccchHHHHHH---HHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHH
Q 001020 192 TDNKDLIGVESSIRQ---IESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
...+++||.+..+.. +.+++..+ ....+.++|++|+||||+|+.+++.....|.. +.... .+...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~~------~~~~~i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAVT------SGVKDL 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eeccc------ccHHHH
Confidence 345678999888666 77777543 45578899999999999999999877554421 11110 222232
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEE--EeCChh--hhh-h
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIII--TTRDKQ--VLK-N 341 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~--v~~-~ 341 (1187)
.+.+ ... . .....+++.+|++|+++.. .+.+.|...+. .|..++| ||.+.. +.. .
T Consensus 78 r~ii-~~~---~-----------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 78 REVI-EEA---R-----------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHH-HHH---H-----------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 2211 111 0 0012357789999999754 44556655543 3555555 344321 111 1
Q ss_pred cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 342 CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 342 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
......+++.+++.++..+++.+.+.........-..+..+.++++++|.+..+..+.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1223679999999999999998865331111001224567788999999987665443
No 61
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=1.7e-07 Score=104.13 Aligned_cols=277 Identities=19% Similarity=0.217 Sum_probs=172.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
..|.+.++|.|||||||++-.+.. +...|...+++.+....... . .+.-.+..... +.....+........+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~-~---~v~~~~ag~~g-l~~~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP-A---LVFPTLAGALG-LHVQPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch-h---HhHHHHHhhcc-cccccchHHHHHHHHHHh
Confidence 457899999999999999999998 88889888777677665444 1 11111111110 111111111112233667
Q ss_pred CceEEEEEcCCCChHH-HHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEecCCCHH-HHHHHHHHhhhCCCCC--
Q 001020 297 RKKIIIVFDDVTCSEQ-IKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEVEALLDY-YALQLFSRHAFGQNQN-- 372 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~~~-- 372 (1187)
+++.++|+||...... -..+...+....+.-+|+.|+|.... ...+..+.++.|+.. ++.++|...+..-...
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 8999999999755432 23333333333556678999998532 234567788888765 7889987766422111
Q ss_pred CCchHHHHHHHHHHHhccCchhhHHHhhhhcCCCHHHHHHHHH----HhhcC------CCchHHHHHHHhcCCCCHHHHH
Q 001020 373 ADPSYKELSDRIIKFAQGVPLALKVLGCFLFGRKMEDWESAAN----KLKKV------PHLDIQKVLKASYDGLDDEEQN 442 (1187)
Q Consensus 373 ~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~~~k~ 442 (1187)
....-.....+|.+...|.|+++...++..+.....+-.+.++ .++.. ........+..||.-|..-++.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 0122235677899999999999999999988776555444443 22222 2345667899999999999999
Q ss_pred HHhhhhcccCCCCHHHHHHHHHhcCC-------ccccchHhhhccccceee----CCEEEehHhhhhhhhhhh
Q 001020 443 IFLDIACFFKGEDKDLVVEFLDASGF-------SAEIGISVLVDKSLIIIL----KNKIIMHDLLQGMGREIV 504 (1187)
Q Consensus 443 ~fl~la~f~~~~~~~~l~~~~~~~g~-------~~~~~l~~L~~~sLi~~~----~~~~~mHdll~~~~~~i~ 504 (1187)
.|-.++.|..+++.+.. .+.+.|- ..-..+..+++++++... .-+++.-+-.+.|+.+..
T Consensus 244 ~~~rLa~~~g~f~~~l~--~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLGLA--LAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HhcchhhhhhhhcccHH--HHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999888876622 2222221 122335667888887654 123334444444554443
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.6e-05 Score=96.20 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=112.8
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 250 (1187)
...+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... |...+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 344679999999999999987543 23466799999999999999999865321 11112
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHH--HHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQ--IKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~--l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++..+++.+ ... . ..-..++.-++|||+++.... +..|+..+.......+
T Consensus 92 EIDAa----s~-rgVDdIReLI-e~a--~------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 92 EMDAA----SN-RGVDEMAALL-ERA--V------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred Eeccc----cc-ccHHHHHHHH-HHH--H------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 21110 01 2233332211 110 0 001123455788999987643 6777766655566788
Q ss_pred EEEEeCChhhh-hh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc-hhhHH
Q 001020 329 IIITTRDKQVL-KN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP-LALKV 397 (1187)
Q Consensus 329 IIiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~ 397 (1187)
+|+||.+..-. .. ......+.++.++.++..+.+.+.+...... -..+..+.|++.++|.. -|+..
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 88888775332 21 1234689999999999999988876543322 12356678888888854 45444
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=3.3e-06 Score=98.34 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=99.6
Q ss_pred CCCccchHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
.+++.|++..++++.+.+... -...+-+.++|++|+|||++|++++++....|-.. ...+.....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v----~~~~l~~~~ 196 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV----VGSELVRKY 196 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec----chHHHHHHh
Confidence 356899999999988866321 12245688999999999999999999876554211 000000000
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC--
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF-- 323 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~-- 323 (1187)
.......+.++.. .-...+.+|+||+++.. ..+..+...+..+
T Consensus 197 ~g~~~~~i~~~f~~------------------a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 197 IGEGARLVREIFEL------------------AKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hhHHHHHHHHHHHH------------------HHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 0000111111110 11235679999998643 1133333333222
Q ss_pred CCCcEEEEEeCChh-----hhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc
Q 001020 324 TSGSRIIITTRDKQ-----VLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP 392 (1187)
Q Consensus 324 ~~gsrIIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP 392 (1187)
..+.+||.||.... +......+..++++..+.++..++|..++.+...+...++ ..+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 24667888887543 2222234678999999999999999988765443312233 45556666653
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.30 E-value=1.1e-05 Score=97.35 Aligned_cols=180 Identities=19% Similarity=0.208 Sum_probs=108.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccC--CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTG--SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
|...++++|.+..++++.+++..- ....+.+.|+|++|+||||+|+++++.+. |+. +.+ +.... .....+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-nasd~----r~~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NASDQ----RTADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-ccccc----ccHHHH
Confidence 334567999999999999988631 12267899999999999999999999773 321 112 22111 112222
Q ss_pred HHHHhhccccCCCCCCccccchhhcccC-CceEEEEEcCCCChH------HHHHHhccCCCCCCCcEEEEEeCChh-hhh
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLS-RKKIIIVFDDVTCSE------QIKFLIGSLDWFTSGSRIIITTRDKQ-VLK 340 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~-~kr~LlVLDDv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~ 340 (1187)
.+ +.... ... ..+. .++-+||+|+++... .++.+...+. ..+..||+|+.+.. ...
T Consensus 82 ~~-~i~~~--~~~-----------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 82 ER-VAGEA--ATS-----------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HH-HHHHh--hcc-----------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 22 22111 000 0111 367799999997642 2444544333 23455666665431 111
Q ss_pred --hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 341 --NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 341 --~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
.......+++.+++.++....+...+.......+ .+....|++.++|..-.+..
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1123457899999999999888877654443322 36678888999887655443
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=3.8e-05 Score=92.02 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=111.7
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--cCCceEEEEechhhh----------
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--QFEGSYFLQNVREES---------- 259 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~---------- 259 (1187)
...++++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+........
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999999999998887543 2346689999999999999999987642 222222221100000
Q ss_pred ---cccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeC
Q 001020 260 ---ERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTR 334 (1187)
Q Consensus 260 ---~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR 334 (1187)
....++..+++ +...+. ..-..+++-++|+|+++.. ..++.|...+....+...+|++|.
T Consensus 90 l~~~~~~~vd~iR~-l~~~~~--------------~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 90 IDAASNNSVEDVRD-LREKVL--------------LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred ecccccCCHHHHHH-HHHHHh--------------hccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 00022222221 111110 0012245668899999754 447777766655455666666654
Q ss_pred C-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 335 D-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 335 ~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
. ..+.... .....+++.+++.++..+.+...+-...... ..+.+..|++.++|.+--+
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 4 3332222 2345899999999999999988775443321 2356788999999987544
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.30 E-value=9.9e-06 Score=98.02 Aligned_cols=243 Identities=13% Similarity=0.104 Sum_probs=124.6
Q ss_pred CCCCCccchHHHHHHHHHhhcc---CCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-----CC--ceEEEEechhhhcc
Q 001020 192 TDNKDLIGVESSIRQIESLLST---GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-----FE--GSYFLQNVREESER 261 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~~~ 261 (1187)
..++.++||+.++++|...|.. +.....++-|+|++|.|||+.++.|.+++... .+ ..+++.+. .....
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm-~Lstp 830 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM-NVVHP 830 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC-ccCCH
Confidence 4567899999999999998853 22333577899999999999999999866321 22 23445332 21111
Q ss_pred cCChHHHHHHHhhccccCCCCCCccccch--hhccc---CCceEEEEEcCCCChH-----HHHHHhccCCCCCCCcEEEE
Q 001020 262 TGGLSQLRQKLFSEDESLSVGIPNVGLNF--RGKRL---SRKKIIIVFDDVTCSE-----QIKFLIGSLDWFTSGSRIII 331 (1187)
Q Consensus 262 ~~~l~~l~~~ll~~~~~~~~~~~~~~~~~--~~~~l---~~kr~LlVLDDv~~~~-----~l~~l~~~~~~~~~gsrIIi 331 (1187)
......|.+++.... +.......... ....+ .+...+||||+|+... .+-.|..... ..+++|+|
T Consensus 831 ~sIYqvI~qqL~g~~---P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKK---PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred HHHHHHHHHHHcCCC---CCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 123444555553321 11111000000 01111 2234689999997542 1222222211 24566654
Q ss_pred --EeCCh--------hhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCC-CchHHHHHHHHHHHhccCchhhHHHhh
Q 001020 332 --TTRDK--------QVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNA-DPSYKELSDRIIKFAQGVPLALKVLGC 400 (1187)
Q Consensus 332 --TTR~~--------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~l~~~i~~~~~GlPLal~~~g~ 400 (1187)
+|.+. .+...++ ...+..++++.++-.+++..++-...... +....-+|+.++...|..-.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 33321 1212222 22467799999999999998875321111 222333344444434445566665544
Q ss_pred hhcCC-----CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhh
Q 001020 401 FLFGR-----KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIA 448 (1187)
Q Consensus 401 ~L~~~-----~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 448 (1187)
+...+ ..+....+...+.. ..+.-....||.++|-+++.+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 43211 22333333333221 1123334578888776665444
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2e-05 Score=91.54 Aligned_cols=180 Identities=16% Similarity=0.156 Sum_probs=110.7
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC---------------------CceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF---------------------EGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~ 250 (1187)
...++++|-+.-++.+.+.+..+. -...+.++|+.|+||||+|+.+++.+.... ....
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 344679999999999999886543 235678999999999999999998764211 0111
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsr 328 (1187)
.+.. ... ..+.++. .+...... ....+++-++|+|+++... .++.++..+....+..+
T Consensus 92 ~~~~----~~~-~~v~~ir-~i~~~~~~--------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 92 EIDA----ASR-TKVEEMR-EILDNIYY--------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred Eecc----ccc-CCHHHHH-HHHHHHhc--------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1100 000 1122221 11111100 0112455689999997664 36667766665556777
Q ss_pred EEEEeCCh-hhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 329 IIITTRDK-QVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 329 IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+|++|.+. .+... .+....+++.+++.++..+.+...+...... -..+.+..|++.++|.|-.+
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 77777553 33322 1234689999999999998888766443322 11256678888999987543
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3e-05 Score=95.70 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=112.9
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-C--------------------CceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-F--------------------EGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F--------------------~~~~ 250 (1187)
....++||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... . ....
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 345679999999999999886542 23456899999999999999999876432 1 1111
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
++.. ... .++..++ .+...+ ......+++-++|||+++.. ...+.|+..+.......+
T Consensus 92 EidA----as~-~kVDdIR-eLie~v--------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 92 EVDA----ASR-TKVDDTR-ELLDNV--------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred Eecc----ccc-cCHHHHH-HHHHHH--------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 1110 000 2222222 222211 00012456779999999764 457777776665556677
Q ss_pred EEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 329 IIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 329 IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+|++|.+ ..+... ......|++.+|+.++..+.+...+-..... -..+.+..|++.++|.|--+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 7766655 334322 1224689999999999999988766432222 22356788999999987533
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.26 E-value=3.2e-05 Score=88.77 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=106.8
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKL 272 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~l 272 (1187)
..++++|++..++.+..++..+. .+.+.++|.+|.||||+|+.+++.+........++. ... +.. .....+.+.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~~-~~~~~~~~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SDE-RGIDVIRNKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-ccc-cchHHHHHHH
Confidence 34568999999999999986533 345799999999999999999987643321111221 110 001 1122222222
Q ss_pred hhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCCh-hhhhh-cCcceeE
Q 001020 273 FSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDK-QVLKN-CRVDGIY 348 (1187)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~~~ 348 (1187)
.......+ .....+-++|+|+++.. +..+.|...+....+.+++|+++... .+... ......+
T Consensus 90 ~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 90 KEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 11110000 00123568899998654 23445554444445667788777442 22111 1123468
Q ss_pred EecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 349 EVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 349 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
++.+++.++....+...+........ .+....+++.++|.+--+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999998888887754433212 356778888999887553
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=111.46 Aligned_cols=238 Identities=23% Similarity=0.219 Sum_probs=114.8
Q ss_pred cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEE
Q 001020 611 HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILS 689 (1187)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~ 689 (1187)
.+..+..++++.|.|.+.-..+..+.+|..|++.+|++. .+.. +..+++|++|+|++|.. ..+ ..+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccc-ccc-cchhhccchhhhe
Confidence 344555555666666654344555666666666666533 3333 55566666666666432 222 2344555566666
Q ss_pred ccCccCCcccCccccccccceeeccccCCCCccc---ccccccceEeecCccccccchhhhccCCCcEEeccCCCCCccc
Q 001020 690 LRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFP---EIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECL 766 (1187)
Q Consensus 690 L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l 766 (1187)
+++|. +..+...-.+++|+.+++++|.....-+ ....+++.+.+.+|.+..+.. +..+..+..+++..|.....-
T Consensus 147 l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 147 LSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eccCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceecc
Confidence 66654 3333332235555555555544333222 233344444444444443321 222222222233332221110
Q ss_pred ccccCCCCCCCEEeccCCCCCccCCcccCCcc--cccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCC
Q 001020 767 SSSLCKLKSLQHLNLFGCTKVERLPDEFGNLE--ALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTM 844 (1187)
Q Consensus 767 p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 844 (1187)
.+..+. .|+.+++++|.+..++..+..+.++..|++..+..... ..+
T Consensus 225 --------------------------~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~-----~~~ 273 (414)
T KOG0531|consen 225 --------------------------GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL-----EGL 273 (414)
T ss_pred --------------------------CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc-----ccc
Confidence 111111 25566666666665555555566666666655554332 223
Q ss_pred CCCCCccEEeccCCCCCC----ccc-ccCCCCCCcEEECccCCCc
Q 001020 845 SGLRILTNLNLSDCGITE----LPN-SLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 845 ~~l~~L~~L~Ls~~~l~~----l~~-~l~~l~~L~~L~L~~n~l~ 884 (1187)
...+.+..+.+..+.+.. ... .....+++..+.+.+|.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 344555556666665542 111 1455677777777776554
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.25 E-value=1.3e-05 Score=92.93 Aligned_cols=198 Identities=16% Similarity=0.177 Sum_probs=107.6
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-CCc-eEEEEechhhhcccCChHHHH
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-FEG-SYFLQNVREESERTGGLSQLR 269 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~~~~~~~l~~l~ 269 (1187)
...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+... +.. .+++ +....... ....+.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i-~~~~~~~~--~~~~~~ 86 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF-NVADFFDQ--GKKYLV 86 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe-chhhhhhc--chhhhh
Confidence 33467899999999999988643 34467899999999999999999876433 222 2333 22211100 000000
Q ss_pred HH-----HhhccccCCCCCCc-cccch---hh-cccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCCh-
Q 001020 270 QK-----LFSEDESLSVGIPN-VGLNF---RG-KRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRDK- 336 (1187)
Q Consensus 270 ~~-----ll~~~~~~~~~~~~-~~~~~---~~-~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~- 336 (1187)
.. .............+ ..... .. .-....+-+||+||++... ..+.|...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00 00000000000000 00000 00 0112334589999997542 2334444333334567888887543
Q ss_pred hhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 337 QVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 337 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
.+.... .....+++.+++.++..+++...+-......+ .+....++++++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 222211 22357889999999999998887654332212 36677888888887655443
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.4e-08 Score=102.70 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=68.4
Q ss_pred cceEeecCcccc--ccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCC--cccCCcccccEEE
Q 001020 729 IEELFLDGTAIE--ELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLP--DEFGNLEALMEMK 804 (1187)
Q Consensus 729 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~ 804 (1187)
+++|+|+.+.|+ .+..-+..+.+|+.|.|.++..-..+-..+.+-.+|+.|+|++|+.+.... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555556555 344446788899999999887777777778888899999999988775432 3456777777777
Q ss_pred cccCcccc--cchhhhcC-CCCCEEEccccC
Q 001020 805 AVRSSIRE--LPSSIVQL-NNLYRLSFERYQ 832 (1187)
Q Consensus 805 l~~n~i~~--lp~~l~~l-~~L~~L~l~~~~ 832 (1187)
++.+.+.. +.-.+.+. ++|+.|++++|.
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 77766541 11122221 456666666654
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.23 E-value=4e-05 Score=87.54 Aligned_cols=182 Identities=16% Similarity=0.203 Sum_probs=107.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEechhhhcccCChHHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN-QFEGSYFLQNVREESERTGGLSQLR 269 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~ 269 (1187)
|...++++|.+..++.|..++..+ ..+.+.++|++|+||||+|+++++.+.. .|...+.-.+.. .. .+...++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s---d~-~~~~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS---DD-RGIDVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc---cc-ccHHHHH
Confidence 344567899999888888887643 3445779999999999999999987633 333222111111 11 2333333
Q ss_pred HHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCCh-hhhhhc-Ccc
Q 001020 270 QKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRDK-QVLKNC-RVD 345 (1187)
Q Consensus 270 ~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~ 345 (1187)
+.+..-. ..... ...++.-++|||+++... ....|...+......+++|+++... .+.... ...
T Consensus 83 ~~i~~~~----~~~~~--------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 83 NKIKMFA----QKKVT--------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHH----hcccc--------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 3321110 00000 002346689999997643 2344444444445667887777543 222111 123
Q ss_pred eeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 346 GIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 346 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
..+++++++.++..+.+...+-......+ .+....+++.++|..-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 47899999999999888887754433212 3567788888888653
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.7e-05 Score=91.26 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=112.3
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 250 (1187)
...+++||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+... |...+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 344679999999999999987543 23577899999999999999999865321 11111
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++.++++-+ ... . .....+++-++|+|+|+.. .....|+..+.....+.+
T Consensus 91 EIDAA----s~-~~VddIReli-~~~---~-----------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 91 EIDAA----SR-TKVEDTRELL-DNV---P-----------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred Eeccc----cc-CCHHHHHHHH-HHH---h-----------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 11110 01 2233333211 111 0 0012345668899999765 346666666655456778
Q ss_pred EEEEeCChh-hhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 329 IIITTRDKQ-VLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 329 IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+|++|.+.. +... ......+++.+++.++..+.+...+-..... -..+....|++.++|-+-.+
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 888877642 2211 1334689999999999999888776544322 12356678888898876433
No 75
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2e-05 Score=89.81 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=109.6
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc------cCCceEEEEechhhhcccCChHHH
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN------QFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
++++|-+..++.+...+..+. -.....++|+.|+||||+|+++++.+.. +.+...|.. ... ....+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~---~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INK---KSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccC---CCCCHHHH
Confidence 467898988999999886543 2357789999999999999999986532 223223321 111 11334444
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCC--CChHHHHHHhccCCCCCCCcEEEEEeCChhhh-hh-cCc
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDV--TCSEQIKFLIGSLDWFTSGSRIIITTRDKQVL-KN-CRV 344 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv--~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~ 344 (1187)
++.. ..+...+ ...++|+ +|+|++ .+...++.|+..+....+++.+|++|.+.+.+ +. ...
T Consensus 79 r~~~-~~~~~~p-------------~~~~~kv-~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 79 RNII-EEVNKKP-------------YEGDKKV-IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHH-HHHhcCc-------------ccCCceE-EEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 4322 2110000 1123444 555554 45566888888887777889999888765322 21 123
Q ss_pred ceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 345 DGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 345 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
...+++.+++.++..+.+..... .. . .+.++.++.+++|.|..+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-~~---~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-DI---K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-CC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 46899999999999887765431 11 1 24467889999998865443
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=6.1e-08 Score=106.49 Aligned_cols=256 Identities=22% Similarity=0.225 Sum_probs=130.8
Q ss_pred ccccCCccEEEcCCCCCCcccCC---CCCCCCccEEecCCCCCcccccc--cccCCCcccEEEccCccCCccc--Cc-cc
Q 001020 632 AQQLVNLKYMDLSHSKQLTEIPD---LSLASNIEKLNLDGCSSLLEIHP--SIKYLNKLAILSLRHCKCIKSL--PT-SI 703 (1187)
Q Consensus 632 ~~~l~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~~~--~i~~L~~L~~L~L~~c~~l~~l--p~-~~ 703 (1187)
..+++|++.|++.+|..++...- -..+++|++|+|..|..+....- -...+++|.+|+++.|..+..- .. .-
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 35677777777777765544331 23567777777777766554321 2345677788888777655441 11 11
Q ss_pred cccccceeeccccCCCCcc-----cccccccceEeecCc-cccccc--hhhhccCCCcEEeccCCCCCcccc-cc-cCCC
Q 001020 704 HLESLKQLFLSGCSNLNTF-----PEIACTIEELFLDGT-AIEELP--LSIECLSRLITLNLENCSRLECLS-SS-LCKL 773 (1187)
Q Consensus 704 ~l~~L~~L~Ls~c~~l~~~-----~~~~~~L~~L~L~~~-~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp-~~-l~~l 773 (1187)
+++.|+.+.+.||..+..- ......+.++++..+ .++... ..-..+..|+.|+.++|......+ .. ..+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 4566777766666543210 000111223332232 111111 111245556666666665543322 11 2344
Q ss_pred CCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCC-CCCCCCccE
Q 001020 774 KSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPT-MSGLRILTN 852 (1187)
Q Consensus 774 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~ 852 (1187)
++|+.|-+++|..+....- ..--.+++.|+.|++.+|....+. .+.. -.+++.|+.
T Consensus 320 ~~L~~l~l~~c~~fsd~~f---------------------t~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGF---------------------TMLGRNCPHLERLDLEECGLITDG--TLASLSRNCPRLRV 376 (483)
T ss_pred CceEEEeccccchhhhhhh---------------------hhhhcCChhhhhhcccccceehhh--hHhhhccCCchhcc
Confidence 5666666666654332210 001123455555666555544432 1111 345667777
Q ss_pred EeccCCCCCC------cccccCCCCCCcEEECccCCCc--cccccccCCCCCCEEeecCCCCCCcC
Q 001020 853 LNLSDCGITE------LPNSLGQLSSLHILFRDRNNFE--RIPTSIIHLTNLFLLKLSYCERLQSL 910 (1187)
Q Consensus 853 L~Ls~~~l~~------l~~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~L~~l 910 (1187)
|.|++|.+.. +...-..+..|..|.|+++... ..-+.+..+++|+.+++.+|.....-
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 7777765432 1233345677788888876543 22334566777888888777765543
No 77
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=5.5e-05 Score=87.03 Aligned_cols=199 Identities=12% Similarity=0.026 Sum_probs=109.4
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC--CceEE-E--EechhhhcccCCh
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF--EGSYF-L--QNVREESERTGGL 265 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~-~--~~~~~~~~~~~~l 265 (1187)
|...++++|-+...+.+.+.+..+. -...+.++|+.|+||+|+|.++++.+-.+= ..... . ..... ......-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c 92 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVA 92 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHH
Confidence 4455789999999999999887543 234688999999999999999998653211 10000 0 00000 0000000
Q ss_pred HHHHHHHhhccccCC----CC------CCccccchh------hcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 266 SQLRQKLFSEDESLS----VG------IPNVGLNFR------GKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 266 ~~l~~~ll~~~~~~~----~~------~~~~~~~~~------~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
..+...-...+..+. .. ...+..... .....+++.++|+||++.. .....|+..+.....++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 000000000000000 00 000000000 0012356678999999654 34556665555445567
Q ss_pred EEEEEeCCh-hhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 328 RIIITTRDK-QVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 328 rIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.+|++|.+. .+.... .....+.+.+++.++..+++...... . .. +....+++.++|.|+....+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~-~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L-PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C-CH---HHHHHHHHHcCCCHHHHHHH
Confidence 777777665 333222 33468999999999999999876421 1 11 22267899999999865554
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.20 E-value=3.1e-05 Score=83.99 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=95.1
Q ss_pred CCccchH-HHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHh
Q 001020 195 KDLIGVE-SSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 195 ~~~vGr~-~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
++||+.. ..+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+. ..+.. ..+.+ .+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~~------~~~~~-~~ 88 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQAAA------GRLRD-AL 88 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHhh------hhHHH-HH
Confidence 3455444 33444444332 2 12346999999999999999999998766655566663 22110 01111 11
Q ss_pred hccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---HHH-HHhccCCC-CCCCcEEEEEeCCh---------hhh
Q 001020 274 SEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---QIK-FLIGSLDW-FTSGSRIIITTRDK---------QVL 339 (1187)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---~l~-~l~~~~~~-~~~gsrIIiTTR~~---------~v~ 339 (1187)
.. + .+.-+|||||+.... .++ .+...+.. ...|..||+|++.. .+.
T Consensus 89 ~~-------------------l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 89 EA-------------------L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred HH-------------------H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 11 1 123489999996431 122 22221111 13467799999863 222
Q ss_pred hhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 340 KNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 340 ~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
........+++++++.++-.+++.+++.......+ .+....|++.++|-.-+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHH
Confidence 22233458999999999999999987754332212 35566777777655433
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=0.00012 Score=86.90 Aligned_cols=186 Identities=19% Similarity=0.192 Sum_probs=109.1
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc----C-----------------Cce
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ----F-----------------EGS 249 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F-----------------~~~ 249 (1187)
|...+++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... + ...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3345679999988888888776442 22457899999999999999999865321 1 011
Q ss_pred EEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 250 YFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
..+... .. .++..++ ++..... .....+++-++|+|+++.. .+.+.|+..+.......
T Consensus 89 ~el~aa----~~-~gid~iR-~i~~~~~--------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 89 IELDAA----SN-RGIDEIR-KIRDAVG--------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred EEEeCc----cc-CCHHHHH-HHHHHHh--------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 111110 00 2333332 2221110 0012345678999999754 34566666655434445
Q ss_pred EEEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC-chhhHHHhh
Q 001020 328 RIIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV-PLALKVLGC 400 (1187)
Q Consensus 328 rIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~~g~ 400 (1187)
.+|++|.+ ..+.... .....+++.+++.++....+...+.......+ .+....|+++++|- +.|+..+-.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55545444 3333222 23458999999999998888887654332212 35667788877654 566665544
No 80
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=6.4e-06 Score=80.39 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=75.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
+++.|.|+-|+|||||+++++++.. .-...+|+. ............++.+.+. .....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRDRRLADPDLLEYFL-------------------ELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHHHHHhhhhhHHHHH-------------------HhhccC
Confidence 5899999999999999999998765 233445553 2221110000000111111 012236
Q ss_pred eEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhhhc------CcceeEEecCCCHHHH
Q 001020 299 KIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNC------RVDGIYEVEALLDYYA 358 (1187)
Q Consensus 299 r~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~------~~~~~~~l~~L~~~ea 358 (1187)
+.+|+||+|.....|......+-..++..+|++|+.....+..- |....+++.+|+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78899999988888777666655555678999999987655321 3334689999988773
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.14 E-value=2e-05 Score=85.55 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=95.6
Q ss_pred CCCcc-chHHHH-HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHH
Q 001020 194 NKDLI-GVESSI-RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQK 271 (1187)
Q Consensus 194 ~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 271 (1187)
.++|+ |..... ..+.++.. +....+.+.|+|..|+|||+||+++++.....=....++.. ... ...
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~----------~~~ 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASP----------LLA 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHh----------HHH
Confidence 34555 554444 44444443 22334678899999999999999999876433223444432 111 000
Q ss_pred HhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCC-CCCc-EEEEEeCChhhhh-------
Q 001020 272 LFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWF-TSGS-RIIITTRDKQVLK------- 340 (1187)
Q Consensus 272 ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~-~~gs-rIIiTTR~~~v~~------- 340 (1187)
+ . .. ...-++|+||++.. .+.+.+...+... ..+. .||+|++......
T Consensus 85 ~-~-------------------~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F-D-------------------FD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H-h-------------------hc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 0 01 12336888999643 2222232222111 2344 3666666432111
Q ss_pred -hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhh
Q 001020 341 -NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFL 402 (1187)
Q Consensus 341 -~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L 402 (1187)
.+.....+++++++.++-.+++...+-..... --.+....+++...|++..+..+...+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22223588999999988777776654322222 123567778888999998877765544
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.14 E-value=1.4e-05 Score=82.92 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=96.3
Q ss_pred cCCCCCccchHHHHHHHHHhhcc---CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLST---GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
|...++|||-+.-++.+.-++.. ..+...-+..||++|+||||||..+++.....|.. ... ... ....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg--~~i---~k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG--PAI---EKAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC--CC-----SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc--hhh---hhHHH
Confidence 45668999999999887766542 23446778899999999999999999988776631 111 001 11223
Q ss_pred HHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCC--------CCCc----------
Q 001020 268 LRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWF--------TSGS---------- 327 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~--------~~gs---------- 327 (1187)
++..+ .. + +++-+|.+|.+... .+-+.|.+....+ ++++
T Consensus 92 l~~il-~~-------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 92 LAAIL-TN-------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHHH-HT----------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHHH-Hh-------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 33222 11 1 23446778999653 3333333332211 2222
Q ss_pred -EEEEEeCChhhhhhc--CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 328 -RIIITTRDKQVLKNC--RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 328 -rIIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
-|=-|||...+.... ...-+.+++..+.+|-.++..+.+..-..+ -..+.+.+|++++.|.|--.
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHH
Confidence 234577775443322 122356899999999999999887554432 33578899999999999543
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.8e-05 Score=91.74 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc--------------------------C
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ--------------------------F 246 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------------F 246 (1187)
..+++||-+.-++.|.+.+..+. -...+.++|..|+||||+|+.+++.+... |
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 44679999999999999987543 23467899999999999999999866321 0
Q ss_pred CceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCC
Q 001020 247 EGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFT 324 (1187)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~ 324 (1187)
...+.+... .. .++.++++.+ ... ...-..++.-++|+|+++.. ...+.|+..+..-.
T Consensus 93 pDviEIdAa----s~-~gVDdIReLi-e~~--------------~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 93 VDYIEMDAA----SN-RGVDEMAQLL-DKA--------------VYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred CcceEeccc----cc-CCHHHHHHHH-HHH--------------HhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 111111100 00 2233332211 110 00012345668999999765 44777777776555
Q ss_pred CCcEEEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 325 SGSRIIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 325 ~gsrIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
.+.++|++|.+ ..+.... .....+.++.++.++..+.+.+.+...... ...+..+.|++.++|.|.-.
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 66776665554 4443322 223579999999999999888766433222 11245678899999988543
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=2.4e-05 Score=84.65 Aligned_cols=147 Identities=21% Similarity=0.334 Sum_probs=89.1
Q ss_pred CCCccchHHHHHH---HHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 194 NKDLIGVESSIRQ---IESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 194 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
.++.||.+..+.+ |.+++ +.+....+.+||++|.||||||+.++..-+.+- ..|+. .+.......+++.+.+
T Consensus 137 L~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDIFE 211 (554)
T ss_pred HHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHHHH
Confidence 3445555544433 23333 245677888999999999999999998544331 23443 2222222233444333
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC--hHHHHHHhccCCCCCCCcEEEE--EeCChhhh---hhcC
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC--SEQIKFLIGSLDWFTSGSRIII--TTRDKQVL---KNCR 343 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~--~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~---~~~~ 343 (1187)
+-... ..+.++|.+|.+|.|.. ..|-+.+++. ...|.-++| ||.+...- ....
T Consensus 212 ~aq~~-----------------~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 212 QAQNE-----------------KSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHHHH-----------------HhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHHh
Confidence 32221 24667899999999953 4455555544 346777766 67765321 1113
Q ss_pred cceeEEecCCCHHHHHHHHHHh
Q 001020 344 VDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 344 ~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
...++.+++|+.++...++.+.
T Consensus 272 RC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHH
Confidence 3468999999999999998873
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.11 E-value=2.2e-05 Score=97.62 Aligned_cols=173 Identities=22% Similarity=0.305 Sum_probs=99.5
Q ss_pred CCCCCccchHHHHH---HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHH
Q 001020 192 TDNKDLIGVESSIR---QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
...+++||.+..+. .+.+.+.. +....+.++|++|+||||+|+.+++.....|. .+..+. .++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~~------~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAVL------AGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhhh------hhhHHH
Confidence 34467899888774 46666653 34557789999999999999999987765552 121110 122222
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC--hHHHHHHhccCCCCCCCcEEEEE--eCChh--hhhhc
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC--SEQIKFLIGSLDWFTSGSRIIIT--TRDKQ--VLKNC 342 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~--~~~l~~l~~~~~~~~~gsrIIiT--TR~~~--v~~~~ 342 (1187)
.+.+ ... .......+++.++||||++. ..+.+.|...+. .|+.++|+ |.+.. +....
T Consensus 94 r~~i-~~a-------------~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 94 RAEV-DRA-------------KERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred HHHH-HHH-------------HHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHh
Confidence 2111 110 00001124567999999964 445666665433 45555553 34321 11111
Q ss_pred -CcceeEEecCCCHHHHHHHHHHhhhCC-----CCCCCchHHHHHHHHHHHhccCch
Q 001020 343 -RVDGIYEVEALLDYYALQLFSRHAFGQ-----NQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 343 -~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
.....+.+++|+.++..+++.+.+-.. ... ..-..+....|++++.|.--
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~-v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRK-VDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcc-cCCCHHHHHHHHHhCCCCHH
Confidence 123579999999999999988765310 011 11123556778888887643
No 86
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.2e-06 Score=71.38 Aligned_cols=58 Identities=36% Similarity=0.497 Sum_probs=51.4
Q ss_pred CCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCC
Q 001020 848 RILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 848 ~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
|+|+.|++++|++..+| ..+..+++|+.|+|++|.++.+|. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999988 467889999999999999998876 78999999999999975
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=6.2e-05 Score=81.65 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=86.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
..+.|||..|+|||.||+++++.+..+-..++|+. ..+.... . ..+.. .+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~~---~----~~~~~-------------------~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLDR---G----PELLD-------------------NLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHhh---h----HHHHH-------------------hhhhC
Confidence 57899999999999999999987765444566663 2221100 0 01111 11111
Q ss_pred eEEEEEcCCCCh---HHHHH-HhccCCC-CCCCcEEEEEeCChh---------hhhhcCcceeEEecCCCHHHHHHHHHH
Q 001020 299 KIIIVFDDVTCS---EQIKF-LIGSLDW-FTSGSRIIITTRDKQ---------VLKNCRVDGIYEVEALLDYYALQLFSR 364 (1187)
Q Consensus 299 r~LlVLDDv~~~---~~l~~-l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 364 (1187)
=++|+||+... .+|+. +...+.. ...|.+||+|++... +...+....++++++++.++-.+++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 26789999532 23322 2222221 135678999887531 112223346789999999999999987
Q ss_pred hhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 365 HAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 365 ~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
++.......+ .+....+++++.|-.-++..+
T Consensus 178 ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 178 RASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 6654322212 366667777776665444433
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=4e-05 Score=89.61 Aligned_cols=172 Identities=24% Similarity=0.324 Sum_probs=97.3
Q ss_pred CCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
.+++.|++..++++.+.+.. +-...+-|.++|++|.|||++|++++++....|- .+ ...+.....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v-~~~~l~~~~ 205 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RV-VGSELVQKF 205 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Ee-ehHHHhHhh
Confidence 35688999999999886532 1123456889999999999999999997654331 11 111110000
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HH---HHHHhccCCCC--
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQ---IKFLIGSLDWF-- 323 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~---l~~l~~~~~~~-- 323 (1187)
.......+.++.. .-...+.+|+|||++.. +. +..+...+..+
T Consensus 206 ~g~~~~~i~~~f~~------------------a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 206 IGEGARLVRELFEL------------------AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred ccchHHHHHHHHHH------------------HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 0011111122111 11235678999998653 11 22233222222
Q ss_pred CCCcEEEEEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 324 TSGSRIIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 324 ~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
..+.+||.||.....+.. ...+..++++..+.++..++|..++.+...+...++. .+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~----~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLE----ELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHH----HHHHHcCCC
Confidence 235567777765432221 1345689999999999999999887554433223333 344455553
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.9e-05 Score=91.95 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=109.6
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 250 (1187)
...+++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.+... |....
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 345678999999999999886542 23457799999999999999999865321 11222
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++.++.+ +..... ..-..+++-++|+|+++.. ...+.|+..+......+.
T Consensus 92 eidaa----s~-~gvd~ir~-ii~~~~--------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 92 EIDAA----SR-TGVEETKE-ILDNIQ--------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred Eeecc----cc-cCHHHHHH-HHHHHH--------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22100 00 22222221 111110 0012346678999999754 446777766665556676
Q ss_pred EEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch-hhHHH
Q 001020 329 IIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL-ALKVL 398 (1187)
Q Consensus 329 IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 398 (1187)
+|++|.+ ..+... ......+++.+++.++..+.+...+-..... -..+....|++.++|-+- |+..+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6655544 334322 2234689999999999888877755332222 123456678888888653 44333
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.09 E-value=6.5e-05 Score=87.64 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=111.9
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc----CC-----------------ceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ----FE-----------------GSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~~ 250 (1187)
...+++||.+..++.+.+.+..+. -...+.++|++|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 345678999999999999886543 23467899999999999999999876421 11 111
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
++.... . .....+. .+....... ...+++-++|+|+++.. .....+...+....+.+.
T Consensus 90 ~~~~~~----~-~~~~~~~-~l~~~~~~~--------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 90 EIDAAS----N-NGVDDIR-EILDNVKYA--------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred Eeeccc----c-CCHHHHH-HHHHHHhcC--------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 121100 0 1111111 111111000 12244558889998654 446666666655456677
Q ss_pred EEEEeCChh-hhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 329 IIITTRDKQ-VLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 329 IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
+|++|.+.. +.... .....+++.+++.++..+.+...+-......+ .+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 777775543 22221 23357899999999998888877654332212 3667788899999886655443
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=8.9e-05 Score=80.51 Aligned_cols=169 Identities=15% Similarity=0.224 Sum_probs=94.8
Q ss_pred ccchHH-HHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhc
Q 001020 197 LIGVES-SIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSE 275 (1187)
Q Consensus 197 ~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 275 (1187)
++|... .+..+..+.... ..+.+.|+|+.|+|||+||+++++....+-..+.|+. +.... .....+ ...
T Consensus 25 ~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~---~~~~~~----~~~ 94 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA---WFVPEV----LEG 94 (235)
T ss_pred ccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh---hhhHHH----HHH
Confidence 336333 334444444322 3357899999999999999999997765544455553 22210 001111 111
Q ss_pred cccCCCCCCccccchhhcccCCceEEEEEcCCCCh---HHHHH-HhccCCC-CCCC-cEEEEEeCCh---------hhhh
Q 001020 276 DESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS---EQIKF-LIGSLDW-FTSG-SRIIITTRDK---------QVLK 340 (1187)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~---~~l~~-l~~~~~~-~~~g-srIIiTTR~~---------~v~~ 340 (1187)
+. +--+|++||+... .+|+. +...+.. ...| .++|+||+.. .+..
T Consensus 95 -------------------~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 95 -------------------ME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred -------------------hh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 00 1137899999543 22322 1111111 0133 4799999864 2333
Q ss_pred hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 341 NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 341 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.+....+++++++++++-.+++.+++...... --++...-|++++.|..-++..+
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 34445689999999999999988766543222 12366777777777665444433
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00014 Score=85.04 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=107.9
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC---ceEEEE------------ech
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE---GSYFLQ------------NVR 256 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~------------~~~ 256 (1187)
...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-. ..|... ++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccce
Confidence 345679999999999999886543 1245789999999999999999986543210 000000 000
Q ss_pred hhh-cccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEe
Q 001020 257 EES-ERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITT 333 (1187)
Q Consensus 257 ~~~-~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTT 333 (1187)
+.. ....++..+++ +...+ ......++.-++|+|+++.. +.++.|+..+........+|++|
T Consensus 94 EIdaas~~gVd~IRe-L~e~l--------------~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 94 EIDAASNRGIENIRE-LRDNV--------------KFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred eechhhcccHHHHHH-HHHHH--------------HhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 000 00011222211 11110 00012356678999999764 44777776665444555555555
Q ss_pred CC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 334 RD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 334 R~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
.+ ..+.... .....|.+.+++.++..+.+.+.+-..... -..+....|++.++|.+-
T Consensus 159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHH
Confidence 44 4443322 223579999999999988888776443322 123567889999999873
No 93
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.07 E-value=2e-05 Score=78.62 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=69.8
Q ss_pred cchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccc
Q 001020 198 IGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDE 277 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~ 277 (1187)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++ +..+.... ..........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-~~~~~~~~-~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL-NASDLLEG-LVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE-ehhhhhhh-hHHHHHhhhh-----
Confidence 47888889998887643 345788999999999999999999875332333343 33222111 0000000000
Q ss_pred cCCCCCCccccchhhcccCCceEEEEEcCCCCh--H---HHHHHhccCCCC---CCCcEEEEEeCChh
Q 001020 278 SLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--E---QIKFLIGSLDWF---TSGSRIIITTRDKQ 337 (1187)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~---~l~~l~~~~~~~---~~gsrIIiTTR~~~ 337 (1187)
............++.++|+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000011123456789999999853 2 233333332221 36778888888653
No 94
>PRK09087 hypothetical protein; Validated
Probab=98.07 E-value=4.8e-05 Score=81.73 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=85.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
.+.+.|||..|+|||+|+++++.... ..|+.. . .+...+...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-~----------~~~~~~~~~~-------------------~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-N----------EIGSDAANAA-------------------AE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-H----------HcchHHHHhh-------------------hc
Confidence 35789999999999999999887542 224421 1 1111111111 01
Q ss_pred ceEEEEEcCCCC----hHHHHHHhccCCCCCCCcEEEEEeCC---------hhhhhhcCcceeEEecCCCHHHHHHHHHH
Q 001020 298 KKIIIVFDDVTC----SEQIKFLIGSLDWFTSGSRIIITTRD---------KQVLKNCRVDGIYEVEALLDYYALQLFSR 364 (1187)
Q Consensus 298 kr~LlVLDDv~~----~~~l~~l~~~~~~~~~gsrIIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 364 (1187)
-+|++||++. .+.+-.+..... ..|..||+|++. +.+...+....++++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 2788899953 233333332222 347789999874 33444445567899999999999999998
Q ss_pred hhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 365 HAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 365 ~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
++-..... --++....|++.+.|..-++..
T Consensus 165 ~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFADRQLY---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHcCCC---CCHHHHHHHHHHhhhhHHHHHH
Confidence 87543222 1236677777777776655554
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=6.4e-06 Score=102.38 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=79.4
Q ss_pred ccceEeCcCCCcc-cccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEcc
Q 001020 614 NLIALEMPHSSVE-KLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLR 691 (1187)
Q Consensus 614 ~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~ 691 (1187)
.+..|+|+++.+. .+|..+..+++|+.|+|++|.+...+|. ++.+++|+.|+|++|.....+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888876 5677788888888888888887777774 8888888888888877777788888888888888888
Q ss_pred CccCCcccCcccc--ccccceeeccccCC
Q 001020 692 HCKCIKSLPTSIH--LESLKQLFLSGCSN 718 (1187)
Q Consensus 692 ~c~~l~~lp~~~~--l~~L~~L~Ls~c~~ 718 (1187)
+|.....+|..+. +.++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 8877667776653 34555666666543
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00012 Score=88.71 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=108.7
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 250 (1187)
...+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.++..+... |....
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 345679999999999999987543 23568899999999999999998865321 11111
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHH--HHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQ--IKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~--l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++..+++.+ .... ..-..+++-++|+|+++.... ...|+..+.......+
T Consensus 92 EidaA----s~-~gVd~IRell-e~a~--------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 92 EIDAA----SN-TGIDNIREVL-ENAQ--------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EEecc----cc-CCHHHHHHHH-HHHH--------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 11100 00 2222222211 1100 001124566899999976543 5555555544445677
Q ss_pred EEEEeCCh-hhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhH
Q 001020 329 IIITTRDK-QVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 329 IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 396 (1187)
+|++|.+. .+... .+....+++..++.++..+.+.+.+-..... -..+....|++.++|.+.-+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHH
Confidence 77777654 22221 1223468888999999998888776543322 123567788899998874433
No 97
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=1.5e-06 Score=103.29 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=99.2
Q ss_pred CCeeEEEecCCCCCCCCC-cccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCC
Q 001020 591 SELKYFHWNGYPLKAMPS-YIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGC 669 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 669 (1187)
.+|..|++.+|.++.+.. .-.+.+|++|++++|.|.++. ++..+..|+.|++++|. +..++.+..+++|+.+++++|
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCcc
Confidence 467777777777777777 456777777777777777773 45566667777777775 455566666777777777775
Q ss_pred CCccccccc-ccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCc--cccccc-ccceEeecCccccccchh
Q 001020 670 SSLLEIHPS-IKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNT--FPEIAC-TIEELFLDGTAIEELPLS 745 (1187)
Q Consensus 670 ~~l~~~~~~-i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~--~~~~~~-~L~~L~L~~~~i~~lp~~ 745 (1187)
.... +... +..+.+|+.+.+.+|.. ..+...-.+..+..+++..+..... ++.... .|+.+++.+|.+..++..
T Consensus 173 ~i~~-ie~~~~~~~~~l~~l~l~~n~i-~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~ 250 (414)
T KOG0531|consen 173 RIVD-IENDELSELISLEELDLGGNSI-REIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEG 250 (414)
T ss_pred hhhh-hhhhhhhhccchHHHhccCCch-hcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccccc
Confidence 4332 2221 46667777777766552 2222212233333344444332211 111111 266777777777776656
Q ss_pred hhccCCCcEEeccCCC
Q 001020 746 IECLSRLITLNLENCS 761 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~ 761 (1187)
+..+.++..|++.++.
T Consensus 251 ~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 251 LENLKNLPVLDLSSNR 266 (414)
T ss_pred ccccccccccchhhcc
Confidence 6666677777766654
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0002 Score=84.71 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=112.1
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc---------------------cCCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN---------------------QFEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~F~~~~ 250 (1187)
...+++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.++..+-. .+..++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345679999999999988886543 2347889999999999999999875421 122223
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++.++++-+ ...... -..+++-++|+|+++.. ...+.|...+....+..+
T Consensus 89 eidaa----s~-~~vddIR~Ii-e~~~~~--------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 89 EIDAA----SN-TSVDDIKVIL-ENSCYL--------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEecc----cC-CCHHHHHHHH-HHHHhc--------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 33211 11 3344443322 111000 12245667999999754 346677766665567777
Q ss_pred EEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 329 IIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 329 IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
+|++|.+ +.+.... .....+++..++.++..+.+...+.......+ .+....|++.++|.+-.
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 7766644 3433322 23467999999999999998887755433212 35567888888887643
No 99
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=6.8e-05 Score=86.99 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=107.2
Q ss_pred CCccchHHHHHHHHHhhccCCC--------CeEEEEEEecCcchHHHHHHHHHHHhhccC--------------------
Q 001020 195 KDLIGVESSIRQIESLLSTGSK--------DVYTLGIWGIGGIGKTTLAGAIFNRISNQF-------------------- 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------------------- 246 (1187)
++++|-+.-++.|.+.+..+.. -...+.++|+.|+||||+|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999989999998875431 245688999999999999999988653321
Q ss_pred CceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCC
Q 001020 247 EGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFT 324 (1187)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~ 324 (1187)
+...++..- . ....+.++++ +...... .-..+++-++|+|+++... ....|+..+....
T Consensus 85 pD~~~i~~~-~---~~i~i~~iR~-l~~~~~~--------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDVRVVAPE-G---LSIGVDEVRE-LVTIAAR--------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCEEEeccc-c---ccCCHHHHHH-HHHHHHh--------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 112222110 0 0122333321 2111100 0122445577779997643 3455665555555
Q ss_pred CCcEEEEEeCCh-hhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 325 SGSRIIITTRDK-QVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 325 ~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
++..+|++|.+. .+.... .....+.+..++.++..+.+..... . . .+.+..++..++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~--~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V--D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 677777776664 343332 2346899999999999988874321 1 1 255778899999998654433
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00029 Score=84.13 Aligned_cols=184 Identities=17% Similarity=0.133 Sum_probs=110.6
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC-------ceEEEE-----------
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE-------GSYFLQ----------- 253 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~----------- 253 (1187)
....++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-..-. ..|...
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 344678999999999988776442 2357889999999999999999986632110 000000
Q ss_pred -echhhh-cccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 254 -NVREES-ERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 254 -~~~~~~-~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
++.+.. ....++.++.+.+ ... ...-..+++-++|+|+++.. ..++.|...+....+.+.+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~ii-e~a--------------~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRII-ESA--------------EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHH-HHH--------------HhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 000000 0002333333222 111 00023356678999999874 4477777666655566666
Q ss_pred EE-EeCChhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 330 II-TTRDKQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 330 Ii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
|+ ||+...+.... .....+++.+++.++..+.+...+...... -..+....|++.++|.+--
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 65 44444444322 233579999999999999998887544322 1135567788889887643
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=9.5e-06 Score=100.84 Aligned_cols=91 Identities=25% Similarity=0.335 Sum_probs=67.6
Q ss_pred cceEeecCcccc-ccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEccc
Q 001020 729 IEELFLDGTAIE-ELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVR 807 (1187)
Q Consensus 729 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 807 (1187)
++.|+|++|.+. .+|..+..+++|+.|+|++|.....+|..+..+++|+.|+|++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445566666665 5677778888888888888777777777788888888888888777777787788888888888888
Q ss_pred Cccc-ccchhhhc
Q 001020 808 SSIR-ELPSSIVQ 819 (1187)
Q Consensus 808 n~i~-~lp~~l~~ 819 (1187)
|.+. .+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 7776 66665543
No 102
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.00 E-value=0.0001 Score=77.33 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=95.6
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEEEEechhhhcccCC
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYFLQNVREESERTGG 264 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~ 264 (1187)
.+.+.+..+. -...+.++|+.|+||||+|+.+...+... +....++.... .. ..
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~-~~ 77 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS-IK 77 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc-CC
Confidence 3444444321 23578899999999999999999876431 21122221110 00 22
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCCh-hhhhh
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDK-QVLKN 341 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~ 341 (1187)
...+.+ +....... ...+.+-++|+|+++.. +..+.|+..+....+.+.+|++|++. .+...
T Consensus 78 ~~~i~~-i~~~~~~~--------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 78 VDQVRE-LVEFLSRT--------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHHHHH-HHHHHccC--------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 223321 11111000 12345668899998654 34666776666556677788777654 22222
Q ss_pred c-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 342 C-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 342 ~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
. .....+++.+++.++..+.+... + . . .+.+..+++.++|.|..
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~--g--i--~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ--G--I--S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc--C--C--C---HHHHHHHHHHcCCCccc
Confidence 1 23358999999999998888776 1 1 1 25688999999998853
No 103
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.99 E-value=8.2e-06 Score=85.38 Aligned_cols=50 Identities=30% Similarity=0.500 Sum_probs=35.6
Q ss_pred CccchHHHHHHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 196 DLIGVESSIRQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.||||+++++++...|. ......+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233456899999999999999999999987766
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00025 Score=85.17 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=107.1
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC---------------------Cce
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF---------------------EGS 249 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 249 (1187)
|....+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...- ...
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 3445689999999999999886543 235788999999999999999998763210 001
Q ss_pred EEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 250 YFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
.++... .. .++.++++ +....... -..+++-++|+|+++.. .....|+..+.......
T Consensus 91 ieIdaa----s~-igVd~IRe-Ii~~~~~~--------------P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~t 150 (605)
T PRK05896 91 VELDAA----SN-NGVDEIRN-IIDNINYL--------------PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHV 150 (605)
T ss_pred EEeccc----cc-cCHHHHHH-HHHHHHhc--------------hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcE
Confidence 111000 00 12222221 11111000 01123335999999763 44566666554444556
Q ss_pred EEEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch-hhHHH
Q 001020 328 RIIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL-ALKVL 398 (1187)
Q Consensus 328 rIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 398 (1187)
.+|++|.. ..+... ......+++.+++.++....+...+-......+ .+.+..+++.++|.+- |+..+
T Consensus 151 vfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 151 VFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred EEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 66655543 333322 223457999999999999888876644322212 3557788888988653 44333
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=4.5e-05 Score=92.80 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=110.5
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 250 (1187)
...+++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-.. |....
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce
Confidence 445689999999999999887543 23456899999999999999999865332 11111
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++.+++ .+...+ ...-..+++-++|+|+++.. ...+.|+..+.......+
T Consensus 92 eidaa----s~-~~VddiR-~li~~~--------------~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 92 EIDAA----SR-TKVEDTR-ELLDNV--------------QYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred eeccc----cc-CCHHHHH-HHHHHH--------------HhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 11100 00 1222222 111111 00012456778999999764 346777666655556667
Q ss_pred EEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 329 IIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 329 IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+|++|.+ ..+... ......|.+..++.++..+.+...+-..... ...+....|++.++|.+--.
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 7666555 344322 2234689999999999999888765333222 12355678889999977533
No 106
>PTZ00202 tuzin; Provisional
Probab=97.98 E-value=3.6e-05 Score=86.77 Aligned_cols=195 Identities=12% Similarity=0.107 Sum_probs=110.4
Q ss_pred ccccCccccccchhhH--HHHHHHHHHHHhhcc------cccCCCCCccchHHHHHHHHHhhccCC-CCeEEEEEEecCc
Q 001020 158 ANLSGFASHAIRPESL--LIEKIVGEILKRLND------MYRTDNKDLIGVESSIRQIESLLSTGS-KDVYTLGIWGIGG 228 (1187)
Q Consensus 158 a~~~g~~~~~~~~e~~--~i~~i~~~i~~~l~~------~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gG 228 (1187)
+...||.+.+++.+-. ..+-.++...+..++ ..|.+...|+||+.++.+|...|...+ ...+++.|.|++|
T Consensus 217 ~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G 296 (550)
T PTZ00202 217 ASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRG 296 (550)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCC
Confidence 3345666655443332 233444555555443 346778899999999999999996433 3456999999999
Q ss_pred chHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCcccc------chhhc-ccCCceEE
Q 001020 229 IGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGL------NFRGK-RLSRKKII 301 (1187)
Q Consensus 229 iGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~------~~~~~-~l~~kr~L 301 (1187)
+|||||++.+..... ...++.+.+ +..++.+.++.+++. +........ ..... ..++++.+
T Consensus 297 ~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr~LL~ALGV-~p~~~k~dLLrqIqeaLl~~~~e~GrtPV 364 (550)
T PTZ00202 297 CGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLRSVVKALGV-PNVEACGDLLDFISEACRRAKKMNGETPL 364 (550)
T ss_pred CCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 999999999997653 335665664 335566666666421 111111000 00111 22377777
Q ss_pred EEEcCC--CChHH-HHHHhccCCCCCCCcEEEEEeCChhhhhh---cCcceeEEecCCCHHHHHHHHHHh
Q 001020 302 IVFDDV--TCSEQ-IKFLIGSLDWFTSGSRIIITTRDKQVLKN---CRVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 302 lVLDDv--~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
||+-== .+..- ..+.. .+.....-|.|++----+.+-.. ...-.-|.++.++.++|.++-...
T Consensus 365 LII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 365 LVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred EEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 777421 11111 11111 12222455677765444332211 112247899999999998876543
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00019 Score=84.43 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=108.5
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc--CCceEEEEechhh----------
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ--FEGSYFLQNVREE---------- 258 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~---------- 258 (1187)
|...++++|-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... +....|.....+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 3345689999999999999886542 23457799999999999999999876431 1000000000000
Q ss_pred ------------hcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCC
Q 001020 259 ------------SERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFT 324 (1187)
Q Consensus 259 ------------~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~ 324 (1187)
.....++.++.+ +...+ ...-..+++-++|+|+++.. ..++.+...+....
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~--------------~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~ 155 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENV--------------RYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP 155 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHH--------------hhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 000011222221 11111 00012345568899998754 35667776666555
Q ss_pred CCcEEEEEe-CChhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 325 SGSRIIITT-RDKQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 325 ~gsrIIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+.+.+|++| +...+.... .....+++.+++.++..+.+...+-..... -..+.+..+++.++|.+--+
T Consensus 156 ~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 156 PHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 677776655 434443321 223478999999999988887765332211 12367788999999977533
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00042 Score=81.03 Aligned_cols=181 Identities=14% Similarity=0.176 Sum_probs=107.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--------cCCceEEEEechhhhccc
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--------QFEGSYFLQNVREESERT 262 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~F~~~~~~~~~~~~~~~~ 262 (1187)
|...++++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+++++.+.. .|...++- .... ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~~--~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDAA--SN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--eccc--cC
Confidence 3345678999999999999986542 2357889999999999999999887643 12222221 1110 10
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeC-Chhhh
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTR-DKQVL 339 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR-~~~v~ 339 (1187)
.+...+.+.+ .+.... ...+++-++|+|+++.. ..++.+...+......+.+|++|. ...+.
T Consensus 88 ~~~~~i~~l~-~~~~~~--------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 88 NSVDDIRNLI-DQVRIP--------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred CCHHHHHHHH-HHHhhc--------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 2223332221 111000 11234557999998654 336666554443344556665553 33332
Q ss_pred hh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 340 KN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 340 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
.. ......+++.+++.++....+...+.......+ .+.+..+++.++|.+-.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRD 205 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHH
Confidence 22 122357899999999999888877654433212 36677788888886543
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00043 Score=84.29 Aligned_cols=180 Identities=15% Similarity=0.187 Sum_probs=109.2
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc--------------------------
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-------------------------- 245 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------------- 245 (1187)
...+++||-+.-++.|.+++..+. -...+.++|..|+||||+|+.+++.+-..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGR 91 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCC
Confidence 345679998888889999887543 23567899999999999999998765321
Q ss_pred CCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCC
Q 001020 246 FEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWF 323 (1187)
Q Consensus 246 F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~ 323 (1187)
+.....+... .. .++.++++-+ .... ..-..++.-++|||+|+.. ...+.|+..+...
T Consensus 92 h~D~~eldaa----s~-~~Vd~iReli-~~~~--------------~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 92 FVDYTELDAA----SN-RGVDEVQQLL-EQAV--------------YKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred CCceeecCcc----cc-cCHHHHHHHH-HHHH--------------hCcccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 1111111100 00 2222322211 1110 0012245567899999765 3466777666654
Q ss_pred CCCcEEEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 324 TSGSRIIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 324 ~~gsrIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
....++|++|.+ ..+... ......++++.++.++..+.+...+.......+ .+....|++.++|.+--+
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDA 222 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 556677766644 333322 223468999999999999888877654333211 356678888888876443
No 110
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.96 E-value=5.2e-05 Score=88.73 Aligned_cols=155 Identities=24% Similarity=0.304 Sum_probs=90.4
Q ss_pred CCCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc
Q 001020 193 DNKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER 261 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 261 (1187)
...++.|.+..++++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+.. .+....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-seL~~k 256 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SELIQK 256 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-chhhhh
Confidence 335678999999999887642 1123456889999999999999999998765541 1111 110000
Q ss_pred c-CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH----------------HHHHHhccCCCC-
Q 001020 262 T-GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE----------------QIKFLIGSLDWF- 323 (1187)
Q Consensus 262 ~-~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~----------------~l~~l~~~~~~~- 323 (1187)
. ..-..+.+.++.. ...+.+.+|+||+++... .+-.++..+..+
T Consensus 257 ~~Ge~~~~vr~lF~~------------------A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 257 YLGDGPKLVRELFRV------------------AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred hcchHHHHHHHHHHH------------------HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 0 0001111111111 112456788888874210 122233222222
Q ss_pred -CCCcEEEEEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhhCC
Q 001020 324 -TSGSRIIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAFGQ 369 (1187)
Q Consensus 324 -~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 369 (1187)
..+.+||.||.....+.. ...+..++++..+.++..++|..++.+.
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 235678888876443332 1346789999999999999999886543
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.93 E-value=0.00015 Score=77.56 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=80.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFE--GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKR 294 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 294 (1187)
....+.|+|..|.|||.|.+++++.+....+ .++|+. ..+ +.+.+...+ ...... .....
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~~~----------f~~~~~~~~--~~~~~~-----~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-AEE----------FIREFADAL--RDGEIE-----EFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-HHH----------HHHHHHHHH--HTTSHH-----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-HHH----------HHHHHHHHH--Hcccch-----hhhhh
Confidence 3456889999999999999999998765543 244442 222 111121111 000000 00011
Q ss_pred cCCceEEEEEcCCCCh---HHHH-HHhccCCC-CCCCcEEEEEeCCh---------hhhhhcCcceeEEecCCCHHHHHH
Q 001020 295 LSRKKIIIVFDDVTCS---EQIK-FLIGSLDW-FTSGSRIIITTRDK---------QVLKNCRVDGIYEVEALLDYYALQ 360 (1187)
Q Consensus 295 l~~kr~LlVLDDv~~~---~~l~-~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 360 (1187)
++ .-=+|++|||+.. ..|+ .+...+.. ...|.+||+|++.. .+...+...-++++++++.++..+
T Consensus 95 ~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 22 2347889999553 2121 12211111 13577999999663 222233445689999999999999
Q ss_pred HHHHhhhCCCCCCCchHHHHHHHHHHHhccCc
Q 001020 361 LFSRHAFGQNQNADPSYKELSDRIIKFAQGVP 392 (1187)
Q Consensus 361 Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP 392 (1187)
++.+.+-......+ .+++.-+++.+.+..
T Consensus 174 il~~~a~~~~~~l~---~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 174 ILQKKAKERGIELP---EEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHTT--S----HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHhCCCCc---HHHHHHHHHhhcCCH
Confidence 99988865443312 355555666554443
No 112
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.90 E-value=1.2e-05 Score=66.95 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=31.0
Q ss_pred ccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 614 NLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 614 ~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
+|++|++++|++..++. .+..+++|++|++++|.+....|+ |.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45556666666666553 345566666666665554433332 555555555555554
No 113
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00025 Score=85.24 Aligned_cols=180 Identities=15% Similarity=0.162 Sum_probs=109.8
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc---------------------cCCceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN---------------------QFEGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~F~~~~ 250 (1187)
...+++||-+.-++.|..++..+. -.....++|+.|+||||+|+.+++.+-. .|....
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345679999999999999996543 2345789999999999999999986532 122222
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++.++++ +..... . .-..++.-++|+|+|+.. ...+.|+..+....+.++
T Consensus 92 eidaa----s~-~~v~~iR~-l~~~~~-~-------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 92 EVDAA----SR-TKVEDTRE-LLDNIP-Y-------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEccc----cc-CCHHHHHH-HHHHHh-h-------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 22211 11 34444433 222210 0 012345567889999764 446666666655556777
Q ss_pred EEEEeCCh-hhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 329 IIITTRDK-QVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 329 IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+|++|.+. .+.... .....+++++++.++..+.+...+-....... .+....|++.++|-+.-+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHH
Confidence 77766553 333221 22356889999999887776665543332211 245667888888877443
No 114
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00024 Score=81.29 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=110.9
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc----CCceEEEEechhhhcccCChH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ----FEGSYFLQNVREESERTGGLS 266 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~l~ 266 (1187)
|.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.+++.+-.. +...... .. .+-.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~----~~----~~~c 89 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA----DP----DPAS 89 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC----CC----CCCC
Confidence 4566789999999999999987553 23468899999999999999999876442 1110000 00 0001
Q ss_pred HHHHHHhhc-------cc-cCCCC----CCccccchh---h-----cccCCceEEEEEcCCCChH--HHHHHhccCCCCC
Q 001020 267 QLRQKLFSE-------DE-SLSVG----IPNVGLNFR---G-----KRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFT 324 (1187)
Q Consensus 267 ~l~~~ll~~-------~~-~~~~~----~~~~~~~~~---~-----~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~ 324 (1187)
...+.+... +. ..... ...+..... . ....+++-++|+|+++... ..+.|+..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111111110 00 00000 000000000 0 0224566789999997543 3555665555444
Q ss_pred CCcEEEEEe-CChhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 325 SGSRIIITT-RDKQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 325 ~gsrIIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
....+|++| +...+.... .....+++.+++.++..+++...+.... -..+.+..+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 555555555 443333322 2235899999999999999987432211 11345678899999999865544
No 115
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=4.4e-06 Score=88.00 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred EEEecCCCCCCCCCcc----cccccceEeCcCCCcccccc---cccccCCccEEEcCCCCCCcccCCC-CCCCCccEEec
Q 001020 595 YFHWNGYPLKAMPSYI----HQENLIALEMPHSSVEKLWG---GAQQLVNLKYMDLSHSKQLTEIPDL-SLASNIEKLNL 666 (1187)
Q Consensus 595 ~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i~~l~~---~~~~l~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~L~L 666 (1187)
.|.+.++.+.+.-... ....+++|+|.+|.|....+ -+.+||.|++|+|++|.....+..+ ....||+.|.|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 4455555555443322 45788999999998876432 2478999999999999876655544 35678888888
Q ss_pred CCCCCc-ccccccccCCCcccEEEccCc
Q 001020 667 DGCSSL-LEIHPSIKYLNKLAILSLRHC 693 (1187)
Q Consensus 667 ~~c~~l-~~~~~~i~~L~~L~~L~L~~c 693 (1187)
.|...- ......+..+++++.|.++.|
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 873211 122233455566666655554
No 116
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.0016 Score=74.48 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=112.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhc-ccCChHH--
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESE-RTGGLSQ-- 267 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~-~~~~l~~-- 267 (1187)
+.+.+..|.|...-+++.+.|... -..+.|.|+-.+|||+|..++.++....=-.++++ +...... ......+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHH
Confidence 445667788985555565555431 24899999999999999999998775432233444 3443211 1123333
Q ss_pred --HHHHHhhccccCCCCCCc-----cccc-----hhhc---ccCCceEEEEEcCCCChHH--------HHHHhccCCC--
Q 001020 268 --LRQKLFSEDESLSVGIPN-----VGLN-----FRGK---RLSRKKIIIVFDDVTCSEQ--------IKFLIGSLDW-- 322 (1187)
Q Consensus 268 --l~~~ll~~~~~~~~~~~~-----~~~~-----~~~~---~l~~kr~LlVLDDv~~~~~--------l~~l~~~~~~-- 322 (1187)
+...+..++. +.....+ .... .... ....++++|++|+|+..-. +..|......
T Consensus 83 ~~~~~~i~~~L~-l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 83 RWFCEEISRQLK-LDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHcC-CChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 3333333321 1110000 0000 0011 1236899999999975322 2222211110
Q ss_pred -CC-CCcEEEEEeCCh---hhhh----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 323 -FT-SGSRIIITTRDK---QVLK----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 323 -~~-~gsrIIiTTR~~---~v~~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
.. ...-.+|..... .... -.++...+++++++.+|...|...+...- .. ...++|...+||+|.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~---~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ---EQLEQLMDWTGGHPY 234 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CH---HHHHHHHHHHCCCHH
Confidence 00 111112222221 1111 12445678999999999999998874321 11 238899999999999
Q ss_pred hhHHHhhhhcCC
Q 001020 394 ALKVLGCFLFGR 405 (1187)
Q Consensus 394 al~~~g~~L~~~ 405 (1187)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999888654
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.87 E-value=0.00022 Score=78.96 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=79.8
Q ss_pred CccchHHHHHHHHHhhcc-------------CCCCeEEEEEEecCcchHHHHHHHHHHHhhcc--CCceEEEEechhhhc
Q 001020 196 DLIGVESSIRQIESLLST-------------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ--FEGSYFLQNVREESE 260 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~ 260 (1187)
.++|.+...++|.++... ..+...-+.++|++|+||||+|+.+++.+... .....++. +...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecHH--
Confidence 467776666555543211 12345668899999999999999999865321 11112221 1110
Q ss_pred ccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC----------hHHHHHHhccCCCCCCCcEEE
Q 001020 261 RTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC----------SEQIKFLIGSLDWFTSGSRII 330 (1187)
Q Consensus 261 ~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~----------~~~l~~l~~~~~~~~~gsrII 330 (1187)
.+..... +.......... .... .-+|++|+++. .+.++.+............+|
T Consensus 84 ------~l~~~~~------g~~~~~~~~~~--~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 ------DLVGEYI------GHTAQKTREVI--KKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred ------Hhhhhhc------cchHHHHHHHH--Hhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1110100 00000000000 0111 23788999964 234566665554433334555
Q ss_pred EEeCChhhhh------h--cCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 331 ITTRDKQVLK------N--CRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 331 iTTR~~~v~~------~--~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
+++.....-. . -.....++++.++.+|-.+++.+.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 6654432210 0 122356899999999999999877654
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00094 Score=81.69 Aligned_cols=183 Identities=16% Similarity=0.133 Sum_probs=105.6
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc--CCceEEEEechhhhc---------
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ--FEGSYFLQNVREESE--------- 260 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~--------- 260 (1187)
...+++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. .+...|.....+...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 345679999999999999886442 23457899999999999999999866321 110011100000000
Q ss_pred -------------ccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCC
Q 001020 261 -------------RTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTS 325 (1187)
Q Consensus 261 -------------~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~ 325 (1187)
...++.++++ +...+ ...-..+++-++|+|+++... ..+.|...+....+
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~--------------~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~ 156 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQ-LRENV--------------RYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPP 156 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHH-HHHHH--------------HhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence 0011222221 11110 000122345578999987653 36666666654455
Q ss_pred CcEEEEEe-CChhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 326 GSRIIITT-RDKQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 326 gsrIIiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
.+.+|++| +...+... ......+++..++.++....+...+-..... -..+.+..+++.++|..-
T Consensus 157 ~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 157 HAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMR 223 (620)
T ss_pred CeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHH
Confidence 66665555 43444432 2345689999999999888887655432211 113567788899998554
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00027 Score=85.35 Aligned_cols=185 Identities=12% Similarity=0.114 Sum_probs=111.7
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC---------------------CceEE
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF---------------------EGSYF 251 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~ 251 (1187)
..+++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-... ....+
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 44678998888888888886442 235778899999999999999998663211 01122
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
+... .. .++.++++ +...+. ..-..+++-++|+|+++.. +..+.|+..+........+
T Consensus 93 Id~a----~~-~~Id~iR~-L~~~~~--------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 93 IDGA----SN-RGIDDAKR-LKEAIG--------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred Eecc----cc-cCHHHHHH-HHHHHH--------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 2110 00 22333222 211110 0012345678999999765 4466666665543455666
Q ss_pred EEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc-hhhHHHhhh
Q 001020 330 IITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP-LALKVLGCF 401 (1187)
Q Consensus 330 IiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~~g~~ 401 (1187)
|++|.+ ..+.... .....+++..++.++..+.+...+........ .+.++.|++.++|.+ .|+..+...
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 666655 3333221 22357899999999999888876654332212 356778888888854 566666543
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00061 Score=83.23 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=111.2
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC---------ceEEEEechhhh---
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE---------GSYFLQNVREES--- 259 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------~~~~~~~~~~~~--- 259 (1187)
...+++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+..... .+.+-...+...
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCC
Confidence 345689999999999999987543 2346789999999999999999987643221 000000000000
Q ss_pred ---------cccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcE
Q 001020 260 ---------ERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 260 ---------~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsr 328 (1187)
....++.++++ +...... .-..+++-++|+|+++... ..+.|+..+....+.+.
T Consensus 100 h~Dv~e~~a~s~~gvd~IRe-Iie~~~~--------------~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~ 164 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIRE-IIESVRY--------------RPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVK 164 (598)
T ss_pred CCceEEecccccCCHHHHHH-HHHHHHh--------------chhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeE
Confidence 00022233222 1111100 0112344568999996553 46666666655556777
Q ss_pred EEEEe-CChhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 329 IIITT-RDKQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 329 IIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
+|++| ....+.... .....+++..++.++..+.+...+-....... .+....|++.++|.+.-+..
T Consensus 165 fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 165 FIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 76655 334443322 23457999999999999998887654332212 25677888999998754433
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00052 Score=83.28 Aligned_cols=182 Identities=19% Similarity=0.184 Sum_probs=109.4
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-----C------------------ce
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-----E------------------GS 249 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~------------------~~ 249 (1187)
..+++||.+.-++.|.+++..+. -...+.++|+.|+||||+|+.++..+.... + .+
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 44679999999999999987543 234578999999999999999998654211 0 01
Q ss_pred EEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 250 YFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
+.+. . .. ..++..+.+ +..... ..-..+++-++|+|+++.. ...+.|+..+.......
T Consensus 90 ieid---a-as-~~gvd~iRe-l~~~~~--------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 90 VELD---A-AS-HGGVDDTRE-LRDRAF--------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred EEec---c-cc-ccCHHHHHH-HHHHHH--------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 1110 0 00 012333321 111110 0011245558899999754 44667776666555667
Q ss_pred EEEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch-hhHHH
Q 001020 328 RIIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL-ALKVL 398 (1187)
Q Consensus 328 rIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 398 (1187)
.+|++|.+ ..+... ......+++..++.++..+.+...+-......+ .+....|+++++|-+- |+..+
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 76665543 444432 223468999999999998888776654332212 2456778888888764 44333
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.78 E-value=0.00069 Score=72.70 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=116.9
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh--ccCCceEEEEechhhhcccCChHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS--NQFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
|...++++|-+..+..|.+.+.. ........+|++|.|||+-|++++..+- +-|++++--.+.+.. .+..-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde----rGisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE----RGISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc----ccccch
Confidence 44557899999999999988865 4567889999999999999999998653 345555432232221 222211
Q ss_pred HHHHh--hccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChhhhhh--c
Q 001020 269 RQKLF--SEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQVLKN--C 342 (1187)
Q Consensus 269 ~~~ll--~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~--~ 342 (1187)
.+.+- ..+ ..... ... ..-...--.+|||+++.. +.|..|......+...+|.|+.+-.-..... .
T Consensus 106 r~Kik~fakl--~~~~~-----~~~-~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 106 REKIKNFAKL--TVLLK-----RSD-GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred hhhhcCHHHH--hhccc-----ccc-CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 11111 000 00000 000 011222247889999875 4488888877777777887655544322211 1
Q ss_pred CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC-chhhHHH
Q 001020 343 RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV-PLALKVL 398 (1187)
Q Consensus 343 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~~ 398 (1187)
....-|..++|.+++..+-+...|-++..+.+. +..+.|+++++|- --|+.++
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 123468899999999988888888666554333 5677888888874 3444444
No 123
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.78 E-value=0.0003 Score=81.83 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=96.2
Q ss_pred CCCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc
Q 001020 193 DNKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER 261 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 261 (1187)
...++.|.+...+++.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+ ...+....
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i-~~s~l~~k 218 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RV-VGSEFVQK 218 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EE-ehHHHHHH
Confidence 345688999988888876531 1123567889999999999999999987654431 11 11110000
Q ss_pred cC-ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------H---HHHHHhccCCCC-
Q 001020 262 TG-GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------E---QIKFLIGSLDWF- 323 (1187)
Q Consensus 262 ~~-~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~---~l~~l~~~~~~~- 323 (1187)
.. .-....+.++. ......+.+|++|+++.. + .+..++..+..+
T Consensus 219 ~~ge~~~~lr~lf~------------------~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 219 YLGEGPRMVRDVFR------------------LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred hcchhHHHHHHHHH------------------HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 00 00011111111 112346789999997532 1 122333333322
Q ss_pred -CCCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 324 -TSGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 324 -~~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
..+..||.||...+.+. ....+..++++..+.++..++|..+.-+.......++. ++++.+.|.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~ 350 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKI 350 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCC
Confidence 23567788887643332 12456789999999999988988766443322123333 444555554
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00021 Score=86.49 Aligned_cols=177 Identities=14% Similarity=0.158 Sum_probs=107.6
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEE
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYF 251 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~ 251 (1187)
...++||-+.-++.+..++..+. -...+.++|+.|+||||+|+.++..+... |.....
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 44678999999999999887543 23456799999999999999999866321 111122
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrI 329 (1187)
+... .. .++.+++ .+..... . .-..+++-++|+|+++... ..+.|+..+......+.+
T Consensus 93 i~~~----~~-~~vd~ir-~l~~~~~-~-------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 93 VDAA----SN-TQVDAMR-ELLDNAQ-Y-------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eecc----cc-CCHHHHH-HHHHHHh-h-------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 2100 01 2233332 2222110 0 0123566789999998654 366666666554566777
Q ss_pred EEEeCCh-hhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 330 IITTRDK-QVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 330 IiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
|++|.+. .+... ......++++.++.++..+.+...+-..... ...+....|++.++|.+-
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 7666543 33322 1123578999999999988887765433222 122456778888999764
No 125
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00034 Score=85.84 Aligned_cols=182 Identities=15% Similarity=0.185 Sum_probs=107.5
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC------------------ceEEEE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE------------------GSYFLQ 253 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------------------~~~~~~ 253 (1187)
....++||-+..++.|...+..+. -.....++|+.|+||||+|+.++..+-..-. ..+.+.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 344678999999999999887543 2356678999999999999999986532100 000010
Q ss_pred echhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEE
Q 001020 254 NVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIII 331 (1187)
Q Consensus 254 ~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIi 331 (1187)
. . .. .+..++++ +...+... -..+++-++|+|+++.. ..+..|+..+........+|+
T Consensus 94 a---a-sn-~~vd~IRe-Lie~~~~~--------------P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 94 A---A-SN-NGVDEIRE-LIENVKNL--------------PTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred c---c-cc-CCHHHHHH-HHHHHHhc--------------hhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 0 0 00 11222211 11111000 12355668899998754 346677766655455566555
Q ss_pred Ee-CChhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch-hhHH
Q 001020 332 TT-RDKQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL-ALKV 397 (1187)
Q Consensus 332 TT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 397 (1187)
+| +...+... ......+++.+++.++..+.+...+-..... -..+.+..+++.++|-+- |+..
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 44444432 2234589999999999988887765433222 112457788889988654 4433
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00077 Score=85.15 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=107.7
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-----------------------Cce
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-----------------------EGS 249 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----------------------~~~ 249 (1187)
...++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.... ..+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 44678999999999999987543 234678999999999999999998763210 001
Q ss_pred EEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 250 YFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
.++. . .. ..++.++++ +.... . ..-..+++-++|||+++.. ...+.|+..+......+
T Consensus 92 ~eid-a---as-~~~Vd~iR~-l~~~~--~------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 92 TEID-A---AS-HGGVDDARE-LRERA--F------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred EEec-c---cc-cCCHHHHHH-HHHHH--H------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 1110 0 00 022333332 11111 0 0012345556889999765 34666776666555677
Q ss_pred EEEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 328 RIIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 328 rIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
.+|++|.+ ..+... ......|++..++.++..+.+.+.+-..... -..+....|++.++|.+.
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 77766644 344432 2334689999999999988887765333222 112455678888888774
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=8.2e-07 Score=103.50 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=78.0
Q ss_pred ccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEccc
Q 001020 728 TIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVR 807 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 807 (1187)
.|...+.++|.+..+..++.-++.|+.|+|++|+....- .+..|+.|++|+|+.|. +..+|..-..--.|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 355666777888888888888888888888887654432 56677777777777743 444553222222377777777
Q ss_pred CcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCC
Q 001020 808 SSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGIT 861 (1187)
Q Consensus 808 n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 861 (1187)
|.++++- .+.+|.+|+.|++++|-..... .+..+..+..|+.|.|.+|.+.
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCccc
Confidence 7766653 3555666666666665544431 2223444555666666665543
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00089 Score=82.66 Aligned_cols=183 Identities=13% Similarity=0.142 Sum_probs=109.7
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC-----c-----------------e
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE-----G-----------------S 249 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~-----------------~ 249 (1187)
...+++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+..... . .
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~ 91 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDV 91 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeE
Confidence 344689999999999998886543 2346689999999999999999987642111 0 0
Q ss_pred EEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 250 YFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
+.+. . . .......+++ +..... ..-..+++-++|+|+++.. +..+.|...+......+
T Consensus 92 ~~i~-~---~-~~~~vd~ir~-ii~~~~--------------~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 92 IEMD-A---A-SHTSVDDARE-IIERVQ--------------FRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA 151 (585)
T ss_pred EEEe-c---c-ccCCHHHHHH-HHHHHh--------------hCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence 0000 0 0 0011222211 111100 0012245668999998654 44666766655445667
Q ss_pred EEEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 328 RIIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 328 rIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.+|++|.+ ..+.... .....+++..++.++..+.+...+........ .+.+..+++.++|.+..+...
T Consensus 152 v~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 152 IFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred EEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 77766644 3333221 22357889999999998888877654332212 356778899999988655443
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0023 Score=76.72 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=106.9
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEE
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYF 251 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~ 251 (1187)
...+++|-+.-++.+...+..+. -.....++|+.|+||||+|+.++..+... +.....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 44678999999999999987543 23456789999999999999999865310 111111
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
+.. ... .++..++ .+...+. ..-..+++-++|+|+++.. ...+.|...+....+...+
T Consensus 93 ida----as~-~gvd~ir-~I~~~~~--------------~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 93 IDA----ASN-RGIDDIR-ALRDAVS--------------YTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EeC----ccC-CCHHHHH-HHHHHHH--------------hCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 100 000 1222221 1111110 0012356679999998754 3456666655544556666
Q ss_pred EEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 330 IITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 330 IiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
|++|.+ ..+... ......+++.+++.++..+.+...+-..... -..+.+..+++.++|.+..+..
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 655533 333322 1233578999999999988888766433322 1125567788888887654433
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0018 Score=77.47 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=112.4
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc----c----------------CCceEE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN----Q----------------FEGSYF 251 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~----------------F~~~~~ 251 (1187)
...+++||-+.-.+.+...+..+. -..+..++|+.|.||||+|+.+++.+-. . +..-++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345679999999999999886543 2346689999999999999999986521 1 111111
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
..+ . ... .++..+++.+-... .. -..+++-++|+|+++.. +..+.|+..+....+.+++
T Consensus 90 eld--a-as~-~gId~IRelie~~~--~~-------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 90 EMD--A-ASN-RGIDDIRELIEQTK--YK-------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred Eec--c-ccc-cCHHHHHHHHHHHh--hC-------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 101 0 001 23444443331100 00 01245668899999764 3466676666555667887
Q ss_pred EEEeCCh-hhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 330 IITTRDK-QVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 330 IiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
|++|.+. .+... ......+++.+++.++..+.+...+-...... ..+.+..|++.++|.+--+..
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 7777664 22211 12245899999999999988877665433221 236677889999998744433
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00059 Score=81.13 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=106.1
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------Cce--------------EE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------EGS--------------YF 251 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~--------------~~ 251 (1187)
...++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.+...= .+. -|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 345689999999999999886543 235677899999999999999998653210 000 01
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
+. +.. . ...++..+.+ +...+ . .....+++-++|+|+++.. +..+.|...+........+
T Consensus 93 ~~-i~g-~-~~~gid~ir~-i~~~l---~-----------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LE-IDG-A-SHRGIEDIRQ-INETV---L-----------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EE-eec-c-ccCCHHHHHH-HHHHH---H-----------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 10 000 0 0012222221 11110 0 0012245667899998654 3455666555544456677
Q ss_pred EEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 330 IITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 330 IiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
|++|.. ..+... ......+++..++.++..+.+...+-+.... -..+.+..++++++|.+-
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 766643 333322 1234579999999999988887765433222 123567788899998664
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00082 Score=77.26 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=130.4
Q ss_pred CCCCCccchHHHHHHHHHhhcc--CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCc--eEEEEechhhhcccCChHH
Q 001020 192 TDNKDLIGVESSIRQIESLLST--GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG--SYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~ 267 (1187)
..++.+.+|+.+++++...|.. ......-+.|+|.+|.|||+.++.+++++...... ++++ |.... ....+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yI-Nc~~~----~t~~~ 88 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYI-NCLEL----RTPYQ 88 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEE-eeeeC----CCHHH
Confidence 3456699999999999988753 11222248899999999999999999988766443 4666 44333 33334
Q ss_pred HHHHHhhccccCCCCCCccccc--hhhc--ccCCceEEEEEcCCCChHH-----HHHHhccCCCCCCCcEEE--EEeCCh
Q 001020 268 LRQKLFSEDESLSVGIPNVGLN--FRGK--RLSRKKIIIVFDDVTCSEQ-----IKFLIGSLDWFTSGSRII--ITTRDK 336 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~~~--~~~~--~l~~kr~LlVLDDv~~~~~-----l~~l~~~~~~~~~gsrII--iTTR~~ 336 (1187)
+..++..++...+......... ...+ .-.++.+++|||+++.... +-.|....... .++|+ ..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 4445554431112111111110 0111 3367899999999965432 33333332222 45543 333333
Q ss_pred hhh--------hhcCcceeEEecCCCHHHHHHHHHHhhh---CCCCCCCchHHHHHHHHHHHhcc-CchhhHHHhhh--h
Q 001020 337 QVL--------KNCRVDGIYEVEALLDYYALQLFSRHAF---GQNQNADPSYKELSDRIIKFAQG-VPLALKVLGCF--L 402 (1187)
Q Consensus 337 ~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~l~~~i~~~~~G-lPLal~~~g~~--L 402 (1187)
.+. ...+.. .+..++-+.+|-.+.+..++- ..... .++..+++..++.+-+| .-.|+..+-.+ +
T Consensus 167 ~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~-~~~vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 167 KFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVI-DDDVLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCc-CccHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 222 222322 377888888888888877653 33333 44445555555555554 33444443222 2
Q ss_pred cCC------CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcc
Q 001020 403 FGR------KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACF 450 (1187)
Q Consensus 403 ~~~------~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f 450 (1187)
+.+ +.+.-..+... .-.....-....|+.++|-.+..++.-
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 211 11111121111 112233444678888888776665554
No 133
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.68 E-value=5.4e-05 Score=85.33 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=59.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCc-----cccc---
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN-QFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPN-----VGLN--- 289 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~-----~~~~--- 289 (1187)
+..+|+|++|+||||||+++|+.+.. +|+.++|+..+++.. ..+.++++.+...+ ....... ....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~v--v~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEV--VASTFDEPAERHVQVAEMV 244 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcE--EEECCCCCHHHHHHHHHHH
Confidence 46889999999999999999997755 699999998776632 35677888876433 1111111 0000
Q ss_pred -hhhc--ccCCceEEEEEcCCCChH
Q 001020 290 -FRGK--RLSRKKIIIVFDDVTCSE 311 (1187)
Q Consensus 290 -~~~~--~l~~kr~LlVLDDv~~~~ 311 (1187)
...+ +..+++++|++|++....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHH
Confidence 0011 346899999999986543
No 134
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=2.6e-06 Score=99.48 Aligned_cols=173 Identities=21% Similarity=0.222 Sum_probs=116.7
Q ss_pred chhhhccCCCcEEeccCCCCCcccccccCCC-CCCCEEeccCCCCCccCCc-------ccC---CcccccEEEcccCccc
Q 001020 743 PLSIECLSRLITLNLENCSRLECLSSSLCKL-KSLQHLNLFGCTKVERLPD-------EFG---NLEALMEMKAVRSSIR 811 (1187)
Q Consensus 743 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l-~~L~~L~L~~~~~l~~lp~-------~l~---~l~~L~~L~l~~n~i~ 811 (1187)
|-+|..+..|+.|.|.+|..... .++..+ ..|++|.-.+ .++.+-+ .+. ....|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 55677788888888888865331 111111 1233332221 1111100 011 1235777788889999
Q ss_pred ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccccccc
Q 001020 812 ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSII 891 (1187)
Q Consensus 812 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~ 891 (1187)
.+..++.-++.|+.|+|+.|+.... ..+..++.|++|||++|.+..+|..-..-..|+.|.|++|.++++- ++.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie 251 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIE 251 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHH
Confidence 9999999999999999999986552 3477889999999999999988854333335999999999999886 788
Q ss_pred CCCCCCEEeecCCCCCCcCCCC-----CCCCCeeeccccc
Q 001020 892 HLTNLFLLKLSYCERLQSLPEL-----PCNISDMDANCCT 926 (1187)
Q Consensus 892 ~L~~L~~L~L~~c~~L~~lp~l-----~~sL~~L~i~~C~ 926 (1187)
+|.+|..||+++| .|....++ ..+|+.|.+.|.|
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999984 44444443 2466666666653
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.66 E-value=0.00032 Score=80.31 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=87.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
|...++++|.+...+.+..++..+. -..++.++|++|+||||+|+++++.....| ..+ +... . . ...+.+
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i-~~~~---~-~-~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFV-NGSD---C-R-IDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEe-ccCc---c-c-HHHHHH
Confidence 3345778999999999999887432 245777799999999999999998764322 222 2211 1 1 222222
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh---HHHHHHhccCCCCCCCcEEEEEeCChhhh-hh-cCcc
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS---EQIKFLIGSLDWFTSGSRIIITTRDKQVL-KN-CRVD 345 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~~ 345 (1187)
.+....... ...+.+-++|+||++.. +..+.+...+.....+.++|+||...... .. ....
T Consensus 87 ~l~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 87 RLTRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 221110000 01123457889999755 22233333333345678899988754221 11 1222
Q ss_pred eeEEecCCCHHHHHHHHHH
Q 001020 346 GIYEVEALLDYYALQLFSR 364 (1187)
Q Consensus 346 ~~~~l~~L~~~ea~~Lf~~ 364 (1187)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677778888887766554
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00034 Score=83.09 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=93.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhccc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFE--GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRL 295 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l 295 (1187)
..-+.|+|..|.|||+|++++++.+..... .++|+. .. .+...+...+.... . .. ......+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~~----------~f~~~~~~~l~~~~-~--~~--~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-GD----------EFARKAVDILQKTH-K--EI--EQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HH----------HHHHHHHHHHHHhh-h--HH--HHHHHHh
Confidence 346889999999999999999997654322 234442 21 12222222110000 0 00 0000112
Q ss_pred CCceEEEEEcCCCChH----HHHHHhccCCC-CCCCcEEEEEeCCh---------hhhhhcCcceeEEecCCCHHHHHHH
Q 001020 296 SRKKIIIVFDDVTCSE----QIKFLIGSLDW-FTSGSRIIITTRDK---------QVLKNCRVDGIYEVEALLDYYALQL 361 (1187)
Q Consensus 296 ~~kr~LlVLDDv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 361 (1187)
.+.-+||+||+.... ..+.+...+.. ...|..||+|+... .+...+...-++++++++.++..++
T Consensus 205 -~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 -CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred -ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 234588899995431 12233222211 13455788887642 2222333445788999999999999
Q ss_pred HHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhh
Q 001020 362 FSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCF 401 (1187)
Q Consensus 362 f~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~ 401 (1187)
+.+++-..... ..-..+....|++.++|.|-.+.-+...
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99887542211 1122477888999999998777665433
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0027 Score=77.35 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=109.4
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-----CCc----------------eE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-----FEG----------------SY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~----------------~~ 250 (1187)
....++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.. +++ ..
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI 91 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE
Confidence 345679999999999999987543 23567899999999999999999865321 111 01
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+.. .. ..++.++++ +...+ ...-..+++-++|+|+++.. ..++.|+..+....+...
T Consensus 92 ~idg----as-~~~vddIr~-l~e~~--------------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 92 EIDG----AS-NTSVQDVRQ-IKEEI--------------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred EecC----cc-cCCHHHHHH-HHHHH--------------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 1100 00 012222221 11110 00012345567889998754 346777766665556666
Q ss_pred EEEEeCC-hhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 329 IIITTRD-KQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 329 IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
+|++|.+ ..+... ......+++.+++.++..+.+...+....... ..+.+..|++.++|.+-.+
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 6666644 333322 12345789999999999888887765443321 2356777888889877543
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0029 Score=77.96 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc-----------------------cCCc
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN-----------------------QFEG 248 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----------------------~F~~ 248 (1187)
...+++||-+..++.|...+..+. -...+.++|+.|+||||+|+.++..+.. +|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 345679999999999999986543 2356789999999999999999886531 1221
Q ss_pred eEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCC
Q 001020 249 SYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSG 326 (1187)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~g 326 (1187)
. .+ +.. .. ..+.++++.+ .+.... -..+++-++|+|+++.. ...+.|+..+......
T Consensus 93 ~-~l-d~~---~~-~~vd~Ir~li-~~~~~~--------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 93 H-EL-DAA---SN-NSVDDIRNLI-EQVRIP--------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred E-Ee-ccc---cc-CCHHHHHHHH-HHHhhC--------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 1 11 110 00 2233333222 111000 11234557899998765 3466676666555566
Q ss_pred cEEEEEe-CChhhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 327 SRIIITT-RDKQVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 327 srIIiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
+.+|++| +...+... .....++++.+++.++....+...+-....... .+.+..|++.++|..-
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMR 217 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 7766555 44444433 233468999999999999888876654432212 2467788888888654
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.63 E-value=0.0011 Score=74.15 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=70.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc--CCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ--FEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
-+.++|++|.||||+|+.++..+... .....|+.... ..+...+. +.......... .. -
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---------~~l~~~~~------g~~~~~~~~~~--~~--a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---------DDLVGQYI------GHTAPKTKEIL--KR--A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH---------HHHhHhhc------ccchHHHHHHH--HH--c
Confidence 57899999999999999988765432 11112332111 11111111 11100000000 01 1
Q ss_pred ceEEEEEcCCCCh-----------HHHHHHhccCCCCCCCcEEEEEeCChhhhhhc--------CcceeEEecCCCHHHH
Q 001020 298 KKIIIVFDDVTCS-----------EQIKFLIGSLDWFTSGSRIIITTRDKQVLKNC--------RVDGIYEVEALLDYYA 358 (1187)
Q Consensus 298 kr~LlVLDDv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea 358 (1187)
..-+|+||++... +..+.|...+.....+.+||.++.....-... .....+++++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 2358888998632 23455555554444566777776543221111 1245799999999999
Q ss_pred HHHHHHhhhC
Q 001020 359 LQLFSRHAFG 368 (1187)
Q Consensus 359 ~~Lf~~~af~ 368 (1187)
.+++...+-.
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 140
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.62 E-value=9.7e-05 Score=72.11 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=44.3
Q ss_pred ccEEEcccccccccchHHHHHHHHhhC-------CCcE----------EEeC-CCCCCCcchHHHHHhhccccEEEEEec
Q 001020 20 YDVFLSFRGEDTRDNFTSHLYAALCRK-------NIET----------FIDN-QLIRGDEISPALLDAIGGSKISVIIFS 81 (1187)
Q Consensus 20 ~dvFis~~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S 81 (1187)
|.|||||++.|.. ..+..|...+... .+.. +.+. +....+.|...|.++|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999842 3677777777663 2211 1122 223445889999999999999999999
Q ss_pred CCcccchhHHHHHHHHHHhcc
Q 001020 82 EGYASSRWCLEEIVKILECKN 102 (1187)
Q Consensus 82 ~~y~~s~~c~~el~~~~~~~~ 102 (1187)
++-..|+|+-.|+..+++..+
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~~ 100 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKGK 100 (130)
T ss_dssp TT----HHHHHHHHHHTTT--
T ss_pred CCcccCcHHHHHHHHHHHCCC
Confidence 999999999999999887544
No 141
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=0.00012 Score=71.76 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=61.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc-----CCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCcccc--ch
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ-----FEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGL--NF 290 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~--~~ 290 (1187)
-+++.|+|.+|+|||++++.+++..... -...+|+ ..... .....+.+.+...+............ ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYV-NCPSS----RTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEE-EHHHH----SSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEE-EeCCC----CCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4689999999999999999999876543 2234455 34332 24556666666554222221001110 11
Q ss_pred hhccc-CCceEEEEEcCCCCh---HHHHHHhccCCCCCCCcEEEEEeCC
Q 001020 291 RGKRL-SRKKIIIVFDDVTCS---EQIKFLIGSLDWFTSGSRIIITTRD 335 (1187)
Q Consensus 291 ~~~~l-~~kr~LlVLDDv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~ 335 (1187)
....+ +.+..+||+|+++.. +.++.+..... ..+.+||+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 11122 334479999999765 33556654433 667788887766
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=1.8e-05 Score=83.46 Aligned_cols=185 Identities=20% Similarity=0.173 Sum_probs=115.5
Q ss_pred ccccceEeecCcccc---ccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCC-ccCCcccCCccccc
Q 001020 726 ACTIEELFLDGTAIE---ELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKV-ERLPDEFGNLEALM 801 (1187)
Q Consensus 726 ~~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~ 801 (1187)
...+++|+|.+|.|+ ++..-+.+++.|+.|+|+.|.....+-.--..+.+|+.|.|.|...- ......+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 345667777777776 34445678899999999887654322211135668888888773321 23334566778888
Q ss_pred EEEcccCcccccch---hhhcC-CCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc--cccCCCCCCcE
Q 001020 802 EMKAVRSSIRELPS---SIVQL-NNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP--NSLGQLSSLHI 875 (1187)
Q Consensus 802 ~L~l~~n~i~~lp~---~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~--~~l~~l~~L~~ 875 (1187)
+|+++.|+++.+.. .+... +.+++|.+..|........ ..--.-+|++..+-+..|.+.+.. .....++++-.
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~-~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK-NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH-HhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 88888886664321 11111 2444555544432211000 000123677888888888877643 34556788889
Q ss_pred EECccCCCccccc--cccCCCCCCEEeecCCCCCCcCC
Q 001020 876 LFRDRNNFERIPT--SIIHLTNLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 876 L~L~~n~l~~lp~--~l~~L~~L~~L~L~~c~~L~~lp 911 (1187)
|+|+.|+|.++.+ .+..++.|..|.++++|....+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 9999998886654 57888999999999887666554
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=6.8e-05 Score=57.31 Aligned_cols=39 Identities=36% Similarity=0.478 Sum_probs=22.6
Q ss_pred CccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccc
Q 001020 849 ILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp 887 (1187)
+|++|+|++|+++++|..++.+++|+.|++++|.|+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666665544
No 144
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0013 Score=69.89 Aligned_cols=259 Identities=18% Similarity=0.187 Sum_probs=138.7
Q ss_pred cCCCCCccchHHHHHHHHHhhccC---CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTG---SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
|....+|||-+.-.+++.=.+... ....--|.++|++|.||||||.-+++.+..++.. .......+..++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~-----tsGp~leK~gDlaa 96 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI-----TSGPALEKPGDLAA 96 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe-----cccccccChhhHHH
Confidence 344568999999888888776532 2335578999999999999999999988655431 11111111122222
Q ss_pred HHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHH-HHHHh-ccCCC--------CCCCcEE--------
Q 001020 268 LRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQ-IKFLI-GSLDW--------FTSGSRI-------- 329 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~-l~~l~-~~~~~--------~~~gsrI-------- 329 (1187)
+. .. +... =++.+|.+..... .+.++ +.... .|+++|.
T Consensus 97 iL----t~-------------------Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 97 IL----TN-------------------LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HH----hc-------------------CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 21 11 1112 2345576644321 22222 11111 1445543
Q ss_pred ---EEEeCChhhhhhc--CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcC
Q 001020 330 ---IITTRDKQVLKNC--RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFG 404 (1187)
Q Consensus 330 ---IiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~ 404 (1187)
=-|||.-.+..-. ...-+.+++.-+.+|-.+...+.|..-... -..+-+.+|+++..|-|--..-+-+..
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~---i~~~~a~eIA~rSRGTPRIAnRLLrRV-- 227 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE---IDEEAALEIARRSRGTPRIANRLLRRV-- 227 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC---CChHHHHHHHHhccCCcHHHHHHHHHH--
Confidence 3588875433221 123367888899999999998887543322 223678899999999994322222221
Q ss_pred CCHHHHHHHHHH--hhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccCC--CCHHHHHHHHHhcCCccc-cchHhhhc
Q 001020 405 RKMEDWESAANK--LKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFKG--EDKDLVVEFLDASGFSAE-IGISVLVD 479 (1187)
Q Consensus 405 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~g~~~~-~~l~~L~~ 479 (1187)
.++..+-.. +.....+.....|.+-=.+|+...++.+.-+.-.+.| ..++.+...+..+-...+ .+=--|++
T Consensus 228 ---RDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 228 ---RDFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred ---HHHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 111111100 0000011233444444456777777777666655533 355655555433221112 22234788
Q ss_pred cccceee
Q 001020 480 KSLIIIL 486 (1187)
Q Consensus 480 ~sLi~~~ 486 (1187)
.++|+..
T Consensus 305 ~gfi~RT 311 (332)
T COG2255 305 QGFIQRT 311 (332)
T ss_pred hchhhhC
Confidence 8888776
No 145
>PRK06620 hypothetical protein; Validated
Probab=97.54 E-value=0.00033 Score=74.59 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=76.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
+.+.|||++|+|||+||+++++.... .++... . . . +. .. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~-----~-~-~----~~----------------------~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI-----F-F-N----EE----------------------IL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh-----h-h-c----hh----------------------HH-hc
Confidence 56899999999999999997765421 222100 0 0 0 00 00 12
Q ss_pred eEEEEEcCCCChHH--HHHHhccCCCCCCCcEEEEEeCChh-------hhhhcCcceeEEecCCCHHHHHHHHHHhhhCC
Q 001020 299 KIIIVFDDVTCSEQ--IKFLIGSLDWFTSGSRIIITTRDKQ-------VLKNCRVDGIYEVEALLDYYALQLFSRHAFGQ 369 (1187)
Q Consensus 299 r~LlVLDDv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 369 (1187)
.-++++||++...+ +-.+...+. ..|..||+|++... +...+...-++++++++.++-.+++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 24678899975432 222222221 35678999988532 22233344589999999999888887776432
Q ss_pred CCCCCchHHHHHHHHHHHhccCc
Q 001020 370 NQNADPSYKELSDRIIKFAQGVP 392 (1187)
Q Consensus 370 ~~~~~~~~~~l~~~i~~~~~GlP 392 (1187)
... --++..+-|++++.|--
T Consensus 164 ~l~---l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 164 SVT---ISRQIIDFLLVNLPREY 183 (214)
T ss_pred CCC---CCHHHHHHHHHHccCCH
Confidence 211 11356666666666553
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.54 E-value=0.0006 Score=81.08 Aligned_cols=158 Identities=23% Similarity=0.353 Sum_probs=89.5
Q ss_pred CCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-----CceEEEEechh
Q 001020 194 NKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-----EGSYFLQNVRE 257 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~~ 257 (1187)
..++.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+ ++..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-NIKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-eccc
Confidence 35677899988888876531 112345688999999999999999999876542 223344 2221
Q ss_pred hh--ccc-CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---------H-----HHHHhccC
Q 001020 258 ES--ERT-GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---------Q-----IKFLIGSL 320 (1187)
Q Consensus 258 ~~--~~~-~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---------~-----l~~l~~~~ 320 (1187)
.. ... ....+..+.++... ......+++++|+||+++..- + +..++..+
T Consensus 260 ~eLl~kyvGete~~ir~iF~~A--------------r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQRA--------------REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred hhhcccccchHHHHHHHHHHHH--------------HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 10 000 00011111111110 000123578999999996421 1 23444433
Q ss_pred CCCC--CCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhh
Q 001020 321 DWFT--SGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 321 ~~~~--~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
+... .+..||.||-....+. ....+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 3344555554443322 11446679999999999999999885
No 147
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=2e-05 Score=97.56 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=100.1
Q ss_pred cCCCcEEeccCCCCCc-ccccccC-CCCCCCEEeccCCCCC-ccCCcccCCcccccEEEcccCcccccchhhhcCCCCCE
Q 001020 749 LSRLITLNLENCSRLE-CLSSSLC-KLKSLQHLNLFGCTKV-ERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYR 825 (1187)
Q Consensus 749 l~~L~~L~L~~~~~l~-~lp~~l~-~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~ 825 (1187)
-.+|++|++++..... ..|..++ .||+|+.|.+++-... +.+.....++++|..||+++++++.+ ..++.|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4567777777644332 2233333 4788999988873321 23345567788999999999999988 78899999999
Q ss_pred EEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc-------cccCCCCCCcEEECccCCCc--cccccccCCCCC
Q 001020 826 LSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP-------NSLGQLSSLHILFRDRNNFE--RIPTSIIHLTNL 896 (1187)
Q Consensus 826 L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~-------~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L 896 (1187)
|.+.+...... ..+-.+-+|++|+.||+|.......+ +.-..+|+|+.||.+++.+. .+...+..-++|
T Consensus 200 L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCCCCch--hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 99887765542 22334667888999999887655422 22345889999999887765 222233444555
Q ss_pred CEEeecC
Q 001020 897 FLLKLSY 903 (1187)
Q Consensus 897 ~~L~L~~ 903 (1187)
+.+.+-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 5554443
No 148
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0021 Score=79.12 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=107.8
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-Cc----------------------e
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-EG----------------------S 249 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~----------------------~ 249 (1187)
....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-... +. .
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 44678999999999999987543 234678999999999999999998764321 10 0
Q ss_pred EEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCc
Q 001020 250 YFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gs 327 (1187)
..+.. ....++.++++-+ .... .....+++-++|+|+++.. +..+.|+..+.......
T Consensus 93 ~ei~~-----~~~~~vd~IReii-~~a~--------------~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~t 152 (620)
T PRK14948 93 IEIDA-----ASNTGVDNIRELI-ERAQ--------------FAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRV 152 (620)
T ss_pred EEEec-----cccCCHHHHHHHH-HHHh--------------hChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCe
Confidence 00100 0002222332221 1110 0011244568899999764 44666776665444555
Q ss_pred EEEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 328 RIIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 328 rIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
.+|++|.+ ..+.... .....+++..++.++..+.+.+.+-....... .+.+..|+++++|.+..+..
T Consensus 153 vfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 153 VFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 55655544 3333322 23457888999999988887776644322211 25577888999998754443
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.50 E-value=0.0011 Score=84.85 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------C
Q 001020 174 LIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------E 247 (1187)
Q Consensus 174 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~ 247 (1187)
.+++...++..+.. +...+.+|||+.+++++...|.... ..-+.++|.+|+||||+|+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 44555545444432 3345689999999999999886543 23566999999999999999999875432 1
Q ss_pred ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH-------H--HH-HHh
Q 001020 248 GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE-------Q--IK-FLI 317 (1187)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~-------~--l~-~l~ 317 (1187)
..+|..+.............+.+++..-+ ....-.+++++|++|++.... + .. .|.
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~lk~ii--------------~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk 309 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKSVI--------------DEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK 309 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHHHHHHH--------------HHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhh
Confidence 23333333221110011111111111111 000112468899999985431 1 11 233
Q ss_pred ccCCCCCCC-cEEEEEeCChhhhhhc-------CcceeEEecCCCHHHHHHHHHHh
Q 001020 318 GSLDWFTSG-SRIIITTRDKQVLKNC-------RVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 318 ~~~~~~~~g-srIIiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
+.+ ..| -++|-||...+..... .....+.+++++.+++.+++...
T Consensus 310 p~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 310 PAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 332 233 4556555543221111 12358999999999999997544
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.48 E-value=0.00076 Score=85.69 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-----C-C
Q 001020 174 LIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-----F-E 247 (1187)
Q Consensus 174 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~ 247 (1187)
.+++...++..+.. +...+.++||+.+++++...|.... ..-+.++|++|+|||++|+.+++++... + .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 44555555544443 2344679999999999999886543 3356799999999999999999987442 1 2
Q ss_pred ceEEEEechhhhccc---CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-----------HHH
Q 001020 248 GSYFLQNVREESERT---GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-----------EQI 313 (1187)
Q Consensus 248 ~~~~~~~~~~~~~~~---~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-----------~~l 313 (1187)
..+|..+........ .....-.+.++.++ -..++.+|++|+++.. +.-
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~------------------~~~~~~ILfiDEih~l~~~g~~~~~~~~~~ 300 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI------------------EKEPNAILFIDEIHTIVGAGATSGGSMDAS 300 (731)
T ss_pred CeEEEecHHHHhhhccccchHHHHHHHHHHHH------------------hccCCeEEEEecHHHHhccCCCCCccHHHH
Confidence 344443322211100 01111111222111 1235789999998532 112
Q ss_pred HHHhccCCCCCCC-cEEEEEeCChhhhhh-------cCcceeEEecCCCHHHHHHHHHHhh
Q 001020 314 KFLIGSLDWFTSG-SRIIITTRDKQVLKN-------CRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 314 ~~l~~~~~~~~~g-srIIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
+.|.+.+. .| -++|-+|...+.... ...-..++++.++.++..+++....
T Consensus 301 ~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 301 NLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 23333332 33 344444443221110 0122478999999999999998654
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.47 E-value=0.0023 Score=75.81 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=86.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhccc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFE--GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRL 295 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l 295 (1187)
...+.|+|..|+|||+||+++++.+..+.. .++|+ +..+ +...+...+ ... .. ... ...+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~----------~~~~~~~~~--~~~---~~-~~~-~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEK----------FTNDFVNAL--RNN---KM-EEF-KEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHH----------HHHHHHHHH--HcC---CH-HHH-HHHH
Confidence 346889999999999999999998766543 23444 2221 111222211 000 00 000 0112
Q ss_pred CCceEEEEEcCCCChH---H-HHHHhccCCCC-CCCcEEEEEeCCh-h--------hhhhcCcceeEEecCCCHHHHHHH
Q 001020 296 SRKKIIIVFDDVTCSE---Q-IKFLIGSLDWF-TSGSRIIITTRDK-Q--------VLKNCRVDGIYEVEALLDYYALQL 361 (1187)
Q Consensus 296 ~~kr~LlVLDDv~~~~---~-l~~l~~~~~~~-~~gsrIIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~L 361 (1187)
++ .-+|||||++... . .+.+...+... ..|..||+|+... . +...+.....+++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 2378899996421 1 12222211111 2455688887642 1 222223334789999999999999
Q ss_pred HHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhH
Q 001020 362 FSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 362 f~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 396 (1187)
+...+-...... -.+....|++.+.|..-.|.
T Consensus 277 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 988875433221 23666777777777655443
No 152
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.45 E-value=0.00019 Score=77.97 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=57.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEechhhhcccCChHHHHHHHhhcccc--CCCCCC-ccccc----
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN-QFEGSYFLQNVREESERTGGLSQLRQKLFSEDES--LSVGIP-NVGLN---- 289 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~--~~~~~~-~~~~~---- 289 (1187)
-..++|.|++|+|||||++++++.+.. +|+..+|+..+++. .....++++.+...+-- ...... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 357899999999999999999997654 68989898766542 14677888887332200 111100 00000
Q ss_pred --hhhcccCCceEEEEEcCCCCh
Q 001020 290 --FRGKRLSRKKIIIVFDDVTCS 310 (1187)
Q Consensus 290 --~~~~~l~~kr~LlVLDDv~~~ 310 (1187)
....+-.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 000134589999999998544
No 153
>CHL00181 cbbX CbbX; Provisional
Probab=97.42 E-value=0.0029 Score=70.67 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=72.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc-C-CceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ-F-EGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
..+.++|++|.||||+|+.+++..... + ...-|+...+ ..+...+..+ ......... ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---------~~l~~~~~g~------~~~~~~~~l--~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---------DDLVGQYIGH------TAPKTKEVL--KKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---------HHHHHHHhcc------chHHHHHHH--HHc-
Confidence 357889999999999999998864321 1 1111221111 1111111111 000000000 011
Q ss_pred CceEEEEEcCCCC-----------hHHHHHHhccCCCCCCCcEEEEEeCChhhhh--------hcCcceeEEecCCCHHH
Q 001020 297 RKKIIIVFDDVTC-----------SEQIKFLIGSLDWFTSGSRIIITTRDKQVLK--------NCRVDGIYEVEALLDYY 357 (1187)
Q Consensus 297 ~kr~LlVLDDv~~-----------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~--------~~~~~~~~~l~~L~~~e 357 (1187)
..-+|++|+++. .+..+.|...+.....+.+||.++....+.. .-.....+++++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 124888999864 2335555555544445567777775433211 11235589999999999
Q ss_pred HHHHHHHhhhCC
Q 001020 358 ALQLFSRHAFGQ 369 (1187)
Q Consensus 358 a~~Lf~~~af~~ 369 (1187)
..+++...+-+.
T Consensus 201 l~~I~~~~l~~~ 212 (287)
T CHL00181 201 LLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHh
Confidence 999988876543
No 154
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00014 Score=55.59 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=35.1
Q ss_pred CCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCCC
Q 001020 871 SSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPEL 913 (1187)
Q Consensus 871 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l 913 (1187)
++|++|+|++|+|+.+|..+.+|++|+.|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 5799999999999999988999999999999997 56666543
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0054 Score=69.36 Aligned_cols=193 Identities=14% Similarity=0.092 Sum_probs=106.7
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc---------------cCCceEEEEechhhh
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN---------------QFEGSYFLQNVREES 259 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~~ 259 (1187)
++++|-+...+.+.+.+..+. -.....++|+.|+||+++|.++++.+-. .++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468999999999999886543 2368889999999999999999986522 223334443210000
Q ss_pred cccCChHHHHHHHhhccccCCCCCCcc---ccch---hhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEE
Q 001020 260 ERTGGLSQLRQKLFSEDESLSVGIPNV---GLNF---RGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIII 331 (1187)
Q Consensus 260 ~~~~~l~~l~~~ll~~~~~~~~~~~~~---~~~~---~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIi 331 (1187)
........+ +...... -......+ .... ...-..+++-++|+|+++... ....|+..+...+ .+.+|+
T Consensus 83 g~~~~~~~~-~~~~~~~--~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 83 GKLITASEA-EEAGLKR--KAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred ccccchhhh-hhccccc--cccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 000000000 0000000 00000000 0000 001233566788889886543 3555665554444 455655
Q ss_pred EeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 332 TTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 332 TTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
+|.+ ..++... .....+++.+++.++..+.+.......... .....++..++|.|.....+
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~------~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN------INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch------hHHHHHHHHcCCCHHHHHHH
Confidence 5544 4444432 334689999999999999998764221111 11357889999999665543
No 156
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.38 E-value=0.0011 Score=82.01 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=40.1
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
|...+.++|.+..++.+.+.+... ....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 344567999999999888777533 34579999999999999999998754
No 157
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0029 Score=77.32 Aligned_cols=179 Identities=13% Similarity=0.115 Sum_probs=105.8
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-----C----------------ceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-----E----------------GSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~----------------~~~ 250 (1187)
...+++||.+..++.+.+.+..+. -.....++|+.|+||||+|+.++..+-..- + .++
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVI 91 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeE
Confidence 345789999999999999987543 235677899999999999999988653110 0 011
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsr 328 (1187)
.+... .. .++..+++ +...+. ..-..+++-++|+|+++.. .....|+..+........
T Consensus 92 eidaa----s~-~~vd~ir~-i~~~v~--------------~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 92 EIDAA----SN-NGVDEIRD-IRDKVK--------------YAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred Eeecc----cc-CCHHHHHH-HHHHHh--------------hCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 11100 00 12222221 111110 0012355668899999755 446677766554445555
Q ss_pred EEEEe-CChhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 329 IIITT-RDKQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 329 IIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
+|++| ....+.... .....+++..++.++..+.+...+-....... .+.+..|++.++|.+..
T Consensus 152 fIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 152 FILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRD 216 (559)
T ss_pred EEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 55555 433333221 23457889999999988888776644332212 25567778888887643
No 158
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0014 Score=77.91 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=86.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhccc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFE--GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRL 295 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l 295 (1187)
..-+.|+|.+|+|||+||+++++.+....+ .+.|+. .. ++...+...+ .... . .... ...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~----------~f~~~~~~~~---~~~~--~-~~f~-~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SE----------KFLNDLVDSM---KEGK--L-NEFR-EKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HH----------HHHHHHHHHH---hccc--H-HHHH-HHH
Confidence 446899999999999999999998766543 234442 21 1222222211 0000 0 0000 112
Q ss_pred CCceEEEEEcCCCCh---H----HHHHHhccCCCCCCCcEEEEEeC-Chhh--------hhhcCcceeEEecCCCHHHHH
Q 001020 296 SRKKIIIVFDDVTCS---E----QIKFLIGSLDWFTSGSRIIITTR-DKQV--------LKNCRVDGIYEVEALLDYYAL 359 (1187)
Q Consensus 296 ~~kr~LlVLDDv~~~---~----~l~~l~~~~~~~~~gsrIIiTTR-~~~v--------~~~~~~~~~~~l~~L~~~ea~ 359 (1187)
+.+.-+||+||+... . .+-.+...+. ..|..||+||. ...- ...+...-++++++.+.+.-.
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 223458999999642 1 1222221111 23557888885 3221 112233457899999999999
Q ss_pred HHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhH
Q 001020 360 QLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 360 ~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 396 (1187)
+++.+.+-......+ .+....|++.+.|.--.|.
T Consensus 270 ~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 270 KIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHH
Confidence 999888754332212 3567777777776544433
No 159
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0018 Score=71.17 Aligned_cols=196 Identities=24% Similarity=0.344 Sum_probs=112.8
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhh-ccc
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREES-ERT 262 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~~~ 262 (1187)
...=|.+.++++|.+.... +-+..+=|.++|++|.|||-||++|+++....| +..+.... +..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgSElVqKY 225 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGSELVQKY 225 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccHHHHHHH
Confidence 4455777778777775432 113356688999999999999999999876555 43332211 000
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------H---HHHHHhccCCCCCC
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------E---QIKFLIGSLDWFTS 325 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~---~l~~l~~~~~~~~~ 325 (1187)
..=.++.+.++.- .-.+.+..|.+|.++.. + .+-.|+..++-|.+
T Consensus 226 iGEGaRlVRelF~l------------------ArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 226 IGEGARLVRELFEL------------------AREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred hccchHHHHHHHHH------------------HhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 0001222222211 12356778888887431 1 14445666666654
Q ss_pred --CcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc----hh
Q 001020 326 --GSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP----LA 394 (1187)
Q Consensus 326 --gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP----La 394 (1187)
.-+||..|-..+++. --..++.++++..+.+.-.+.|.-|+-+-.....-+++.++ +.+.|.- .|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la----~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA----RLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHH----HhcCCCchHHHHH
Confidence 357887775544432 22567889999777777789999888766554345555444 4444433 33
Q ss_pred hHHHhhhhc--C-C---CHHHHHHHHHHh
Q 001020 395 LKVLGCFLF--G-R---KMEDWESAANKL 417 (1187)
Q Consensus 395 l~~~g~~L~--~-~---~~~~w~~~l~~l 417 (1187)
+.+=|++++ . + +.+++..+.++.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 444444433 2 1 445566555543
No 160
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0062 Score=74.86 Aligned_cols=183 Identities=16% Similarity=0.185 Sum_probs=106.5
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc--C-------------------CceE
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ--F-------------------EGSY 250 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F-------------------~~~~ 250 (1187)
...+++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.. . ....
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 345689999999999999886542 23466899999999999999999865321 1 0011
Q ss_pred EEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcE
Q 001020 251 FLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSR 328 (1187)
Q Consensus 251 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsr 328 (1187)
.+.. ... .++.++++ +...+... -..+++-++|+|+|+... ..+.|+..+....+...
T Consensus 92 eid~----~s~-~~v~~ir~-l~~~~~~~--------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 92 EIDG----ASN-TGVDDIRE-LRENVKYL--------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred eeec----cCc-cCHHHHHH-HHHHHHhc--------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 1100 000 22233221 21111000 112345578899997653 36666666554456667
Q ss_pred EEEEeC-Chhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc-hhhHHH
Q 001020 329 IIITTR-DKQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP-LALKVL 398 (1187)
Q Consensus 329 IIiTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~~ 398 (1187)
+|++|. ...+.... .....+++..++.++..+.+...+-......+ .+.+..+++.++|.. .|+..+
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 765554 44444322 23457889999999988877765543322211 255677888888865 444443
No 161
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.36 E-value=0.0012 Score=79.20 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=87.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCc--eEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhccc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEG--SYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRL 295 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l 295 (1187)
...+.|+|.+|+|||+||+++++.+..++.. +.|+ ...+. ...+...+... .. .. ....+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~------~~~~~~~~~~~---------~~-~~-~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKF------TNDFVNALRNN---------TM-EE-FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHH------HHHHHHHHHcC---------cH-HH-HHHHH
Confidence 4568899999999999999999988776532 3344 22211 11122221100 00 00 01122
Q ss_pred CCceEEEEEcCCCCh---H-HHHHHhccCCC-CCCCcEEEEEeCCh---------hhhhhcCcceeEEecCCCHHHHHHH
Q 001020 296 SRKKIIIVFDDVTCS---E-QIKFLIGSLDW-FTSGSRIIITTRDK---------QVLKNCRVDGIYEVEALLDYYALQL 361 (1187)
Q Consensus 296 ~~kr~LlVLDDv~~~---~-~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 361 (1187)
+ +.-+|||||++.. + ..+.+...+.. ...|..||+|+... .+...+....++++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 2 3448899999532 1 11222221110 12355688887653 1222333445799999999999999
Q ss_pred HHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhH
Q 001020 362 FSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 362 f~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 396 (1187)
+...+-......+ .++...|++.+.|..-.|.
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 9988754322212 3567777777777655433
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0022 Score=72.81 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=91.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEEEEechhhhcccCChHHHHHHHhhcc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYFLQNVREESERTGGLSQLRQKLFSED 276 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~ 276 (1187)
...+.++|+.|+||||+|+.++..+-.. .+...++... + ....-.+.++++ +...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~-~-~~~~i~id~iR~-l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE-E-ADKTIKVDQVRE-LVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-C-CCCCCCHHHHHH-HHHHH
Confidence 4568899999999999999999865321 1122222110 0 001123334433 22221
Q ss_pred ccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCCh-hhhhhc-CcceeEEecC
Q 001020 277 ESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDK-QVLKNC-RVDGIYEVEA 352 (1187)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~ 352 (1187)
... -...+.|++ |+|+++.. .....|+..+.....++.+|+||.+. .++... .....+.+.+
T Consensus 99 ~~~-------------~~~~~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~ 164 (328)
T PRK05707 99 VQT-------------AQLGGRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPL 164 (328)
T ss_pred hhc-------------cccCCCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCC
Confidence 000 012334555 67999764 44666666665555678888888775 343332 2345799999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 353 LLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 353 L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
++.+++.+.+.... ... ..+.+..++..++|.|+....+
T Consensus 165 ~~~~~~~~~L~~~~-~~~------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 165 PSNEESLQWLQQAL-PES------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred cCHHHHHHHHHHhc-ccC------ChHHHHHHHHHcCCCHHHHHHH
Confidence 99999998887653 111 1234567788999999755444
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.35 E-value=0.0015 Score=84.06 Aligned_cols=169 Identities=13% Similarity=0.118 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------C
Q 001020 174 LIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------E 247 (1187)
Q Consensus 174 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~ 247 (1187)
.+++...++..+.. +...+.++||+.+++++...|.... ...+.++|.+|+|||+||+.++.++.... .
T Consensus 160 ~l~~~~~~l~~~~r---~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAE---QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHh---cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 44444444444432 2344679999999999999997543 33566999999999999999999875421 2
Q ss_pred ceEEEEechhhhccc---CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---------HHHH
Q 001020 248 GSYFLQNVREESERT---GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---------QIKF 315 (1187)
Q Consensus 248 ~~~~~~~~~~~~~~~---~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---------~l~~ 315 (1187)
..+|..+........ .....-.+.++.++ .-.+++++|++|++.... +...
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~-----------------~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~ 297 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDL-----------------AKQEGNVILFIDELHTMVGAGKADGAMDAGN 297 (857)
T ss_pred CEEEEEehhhhhhccchhhhhHHHHHHHHHHH-----------------HHcCCCeEEEEecHHHhccCCCCccchhHHH
Confidence 334433333211110 11111112222111 112468999999985432 1223
Q ss_pred HhccCCCCCCC-cEEEEEeCChhhhhh-------cCcceeEEecCCCHHHHHHHHHHhh
Q 001020 316 LIGSLDWFTSG-SRIIITTRDKQVLKN-------CRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 316 l~~~~~~~~~g-srIIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
++.+.. ..| -++|-+|........ ...-..+.+...+.++..+++....
T Consensus 298 ~lkp~l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 298 MLKPAL--ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred Hhcchh--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 332221 233 355555544332110 0112356788889999998886543
No 164
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.32 E-value=0.00037 Score=79.20 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=59.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEechhhhcccCChHHHHHHHhhcccc--CCCCCCc-cccch---
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFLQNVREESERTGGLSQLRQKLFSEDES--LSVGIPN-VGLNF--- 290 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~--~~~~~~~-~~~~~--- 290 (1187)
-..++|+|++|.|||||++.+++.+..+ |+..+|+..+++. ...+.++++.+...+-. +...... .....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 3578999999999999999999987665 9999998776552 14677888888544310 1111000 00000
Q ss_pred ---hhcccCCceEEEEEcCCCChH
Q 001020 291 ---RGKRLSRKKIIIVFDDVTCSE 311 (1187)
Q Consensus 291 ---~~~~l~~kr~LlVLDDv~~~~ 311 (1187)
...+..+++++|++|++....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHH
Confidence 011456899999999986543
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0019 Score=76.53 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=80.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
.-+.|+|+.|+|||+||+++++.+...-..++|+.. . .+...+...+ .... . .. ..... .+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~----------~f~~~~~~~l---~~~~--~-~~-f~~~~-~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-E----------LFTEHLVSAI---RSGE--M-QR-FRQFY-RN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-H----------HHHHHHHHHH---hcch--H-HH-HHHHc-cc
Confidence 568899999999999999999987654344455531 1 1122222221 0000 0 00 01112 23
Q ss_pred eEEEEEcCCCChH----HHHHHhccCCC-CCCCcEEEEEeCCh---------hhhhhcCcceeEEecCCCHHHHHHHHHH
Q 001020 299 KIIIVFDDVTCSE----QIKFLIGSLDW-FTSGSRIIITTRDK---------QVLKNCRVDGIYEVEALLDYYALQLFSR 364 (1187)
Q Consensus 299 r~LlVLDDv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 364 (1187)
.-+|++||+.... ..+.+...+.. ...|..||+||... .+...+...-++++++++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4578889985431 11122211110 02456788888542 2222233346889999999999999988
Q ss_pred hhhCCCCCCCchHHHHHHHHHHHhcc
Q 001020 365 HAFGQNQNADPSYKELSDRIIKFAQG 390 (1187)
Q Consensus 365 ~af~~~~~~~~~~~~l~~~i~~~~~G 390 (1187)
++-......+ .+...-|++.+.|
T Consensus 283 k~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCC
Confidence 7754332212 2444445554443
No 166
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.26 E-value=0.0092 Score=63.32 Aligned_cols=122 Identities=26% Similarity=0.348 Sum_probs=70.3
Q ss_pred CCCCCccchHHHHHHHHHhh---ccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHH
Q 001020 192 TDNKDLIGVESSIRQIESLL---STGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
...+.++|.+.+.+.|.+-. ..+ ....-|.+||..|.|||++++++.+++..+= .-+..+... ....+..|
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~--~L~~l~~l 97 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKE--DLGDLPEL 97 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHH--HhccHHHH
Confidence 34567999999999887632 122 2345677899999999999999999876543 222222221 11233333
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCC---ChHHHHHHhccC----CCCCCCcEEEEEeCChhhhh
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVT---CSEQIKFLIGSL----DWFTSGSRIIITTRDKQVLK 340 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~---~~~~l~~l~~~~----~~~~~gsrIIiTTR~~~v~~ 340 (1187)
...+ +-+..|++|.+||+. .......|...+ ........|..||-.+++.+
T Consensus 98 ~~~l---------------------~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 98 LDLL---------------------RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred HHHH---------------------hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 3332 224579999999982 223334433332 22223344455555555543
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.22 E-value=0.0024 Score=82.43 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------C
Q 001020 174 LIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------E 247 (1187)
Q Consensus 174 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~ 247 (1187)
.+++...++..+.. +...+.+|||+.+++++...|.... ...+.++|.+|+|||++|+.++.++...+ .
T Consensus 155 ~l~~~~~~l~~~~~---~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 155 ALEKYARDLTERAR---EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred HHHHHhhhHHHHhh---CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 34444444443332 2334679999999999999997543 23556899999999999999999875432 2
Q ss_pred ceEEEEechhhhccc---CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---------HHHH
Q 001020 248 GSYFLQNVREESERT---GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---------QIKF 315 (1187)
Q Consensus 248 ~~~~~~~~~~~~~~~---~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---------~l~~ 315 (1187)
..+|..++....... .....-.+.++..+ .-.+++.+|++|++.... +...
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~-----------------~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~ 292 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEV-----------------TKSEGQIILFIDELHTLVGAGKAEGAMDAGN 292 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH-----------------HhcCCCeEEEeccHHHhhcCCCCcchhHHHH
Confidence 334433332211000 01111111111111 112468999999986432 1222
Q ss_pred HhccCCCCCCC-cEEEEEeCChhhhhh-------cCcceeEEecCCCHHHHHHHHHHhh
Q 001020 316 LIGSLDWFTSG-SRIIITTRDKQVLKN-------CRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 316 l~~~~~~~~~g-srIIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
++.+.. ..| -++|-+|.....-.. ...-..+.++.++.++..+++....
T Consensus 293 ~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 293 MLKPAL--ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred Hhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 222221 223 344544443322110 1122467899999999999887553
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=9.4e-05 Score=91.67 Aligned_cols=125 Identities=22% Similarity=0.179 Sum_probs=81.1
Q ss_pred ccccceeeccccCC----CCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCc-ccccccCCCCCCCEE
Q 001020 705 LESLKQLFLSGCSN----LNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLE-CLSSSLCKLKSLQHL 779 (1187)
Q Consensus 705 l~~L~~L~Ls~c~~----l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L 779 (1187)
+|+|+.|.+++-.. ...+-..++||..||+++|+++.+ .++++|++|+.|.+.+-.... .--..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 66777776666221 122334566788888888999988 779999999999998754433 112356789999999
Q ss_pred eccCCCCCccC------CcccCCcccccEEEcccCcccc--cchhhhcCCCCCEEEccc
Q 001020 780 NLFGCTKVERL------PDEFGNLEALMEMKAVRSSIRE--LPSSIVQLNNLYRLSFER 830 (1187)
Q Consensus 780 ~L~~~~~l~~l------p~~l~~l~~L~~L~l~~n~i~~--lp~~l~~l~~L~~L~l~~ 830 (1187)
|+|.-...... -+.-..+++|+.||.+++.+.. +-..+..-++|+.+...+
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 99985433221 1223457899999999887762 222333445555555443
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.21 E-value=0.0015 Score=79.44 Aligned_cols=171 Identities=23% Similarity=0.282 Sum_probs=90.6
Q ss_pred CCCccchHHHHHHHHHhhc---c-------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc-
Q 001020 194 NKDLIGVESSIRQIESLLS---T-------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT- 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~- 262 (1187)
.++++|.+...+++.+++. . +....+-+.++|++|.|||+||++++......| +..+..+.....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~~~~~~~~ 129 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGSDFVEMFV 129 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHHHHHHHHh
Confidence 3567888877766665443 1 112234588999999999999999998654332 111111100000
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH----------------HHHHHhccCCCC--
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE----------------QIKFLIGSLDWF-- 323 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~----------------~l~~l~~~~~~~-- 323 (1187)
.....+.+ ++.. .....+.+|++||++... .+..++..++.+
T Consensus 130 g~~~~~l~~-~f~~------------------a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 130 GVGASRVRD-LFEQ------------------AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred cccHHHHHH-HHHH------------------HHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 01111111 1111 122346789999985421 123333333322
Q ss_pred CCCcEEEEEeCChhhh-----hhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 324 TSGSRIIITTRDKQVL-----KNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 324 ~~gsrIIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
..+-.||.||...... .....+..++++..+.++-.++|..+.-........+ ...+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCC
Confidence 2334455566553221 1124567899999999999999988764332221122 33566666663
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.19 E-value=0.0024 Score=82.31 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-----C-C
Q 001020 174 LIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-----F-E 247 (1187)
Q Consensus 174 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~ 247 (1187)
..++...++..+-. ....+.++||+.+++++...|.... ..-+.++|++|+|||++|+.++.++... . .
T Consensus 161 ~l~~~~~~l~~~a~---~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAI---DGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHH---cCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 45555555554421 1233568999999999999997543 2345699999999999999999976432 1 2
Q ss_pred ceEEEEechhhhccc---CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---------HHHH
Q 001020 248 GSYFLQNVREESERT---GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---------QIKF 315 (1187)
Q Consensus 248 ~~~~~~~~~~~~~~~---~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---------~l~~ 315 (1187)
..+|..+........ ...+.-.+.++.+ ....++++|++|+++..- ....
T Consensus 236 ~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~------------------~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~ 297 (821)
T CHL00095 236 KLVITLDIGLLLAGTKYRGEFEERLKRIFDE------------------IQENNNIILVIDEVHTLIGAGAAEGAIDAAN 297 (821)
T ss_pred CeEEEeeHHHHhccCCCccHHHHHHHHHHHH------------------HHhcCCeEEEEecHHHHhcCCCCCCcccHHH
Confidence 344543332211110 0111111111111 112467899999984221 1222
Q ss_pred Hh-ccCCCCCCCcEEEEEeCChhhhhh-------cCcceeEEecCCCHHHHHHHHHH
Q 001020 316 LI-GSLDWFTSGSRIIITTRDKQVLKN-------CRVDGIYEVEALLDYYALQLFSR 364 (1187)
Q Consensus 316 l~-~~~~~~~~gsrIIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 364 (1187)
++ +.+. ...-++|.+|........ ......++++..+.++...++..
T Consensus 298 lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 298 ILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 22 2221 122455555554432111 11234678889999998888764
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.0017 Score=63.56 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEEecCcchHHHHHHHHHHHhh
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.17 E-value=0.0019 Score=79.61 Aligned_cols=171 Identities=25% Similarity=0.312 Sum_probs=94.3
Q ss_pred CCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
..++++|.++..+++.+++.. +..-.+-|.++|++|.|||+||++++......| +.....+.....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~f~~~~ 256 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSEFVEMF 256 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHHHHHHh
Confidence 345688988877777665421 111234688999999999999999998653322 111111100000
Q ss_pred --CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC-
Q 001020 263 --GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF- 323 (1187)
Q Consensus 263 --~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~- 323 (1187)
.+...+. .++. ......+.+|++||++.. ..+..++..++.+
T Consensus 257 ~g~~~~~vr-~lF~------------------~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 257 VGVGAARVR-DLFK------------------KAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred hhhhHHHHH-HHHH------------------HHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 0011111 1111 122456789999999543 1134444433322
Q ss_pred -CCCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhcc
Q 001020 324 -TSGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQG 390 (1187)
Q Consensus 324 -~~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~G 390 (1187)
..+-.||.||...+.+. ....+..+.++..+.++-.+++..++-..... + ......+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--P--DVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCC
Confidence 23556666776543322 12345788999999999999998887542211 1 1223455555555
No 173
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.17 E-value=0.0028 Score=76.43 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=83.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCC--ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFE--GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
..+.|+|..|.|||.|++++++.....+. .+.|+. .. .+...+...+ .... . .... .+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-ae----------ef~~el~~al--~~~~---~-~~f~-~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SE----------EFTNEFINSI--RDGK---G-DSFR-RRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HH----------HHHHHHHHHH--Hhcc---H-HHHH-HHhh
Confidence 45899999999999999999998765432 234442 21 1222222211 0000 0 0000 1122
Q ss_pred CceEEEEEcCCCCh---HH----HHHHhccCCCCCCCcEEEEEeCCh---------hhhhhcCcceeEEecCCCHHHHHH
Q 001020 297 RKKIIIVFDDVTCS---EQ----IKFLIGSLDWFTSGSRIIITTRDK---------QVLKNCRVDGIYEVEALLDYYALQ 360 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~---~~----l~~l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 360 (1187)
+-=+|||||+... +. +-.+...+. ..|..|||||+.. .+...+...-+++++..+.+.-.+
T Consensus 377 -~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 377 -EMDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred -cCCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 2347889999543 11 222222221 3466788888762 233334455689999999999999
Q ss_pred HHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 361 LFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 361 Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
++.+++-......+ .+++.-|++.+.+.
T Consensus 454 IL~kka~~r~l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 454 ILRKKAVQEQLNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHHhccCC
Confidence 99988754433212 35555666555544
No 174
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.05 E-value=0.011 Score=65.54 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=95.3
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeE-EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVY-TLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQK 271 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 271 (1187)
..+.+-+|+.+++.+.+++...+..++ .|-|+|.+|.|||.+.+++.+.... ..+|+. ..+. ...+.+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n-~~ec----ft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN-CVEC----FTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee-hHHh----ccHHHHHHH
Confidence 346788999999999999987665444 4589999999999999999987632 346774 4444 445555556
Q ss_pred HhhccccCCCCCCcccc--c--------hh---hcccCCceEEEEEcCCCChHHHHH-----HhccCCCCCCCcEEEEEe
Q 001020 272 LFSEDESLSVGIPNVGL--N--------FR---GKRLSRKKIIIVFDDVTCSEQIKF-----LIGSLDWFTSGSRIIITT 333 (1187)
Q Consensus 272 ll~~~~~~~~~~~~~~~--~--------~~---~~~l~~kr~LlVLDDv~~~~~l~~-----l~~~~~~~~~gsrIIiTT 333 (1187)
++.+.+..+........ . .. ...-+++.++||||+++...+.+. +.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 65554211111111100 0 00 001126799999999976654322 211100011123334444
Q ss_pred CCh---hhhhhcCcce--eEEecCCCHHHHHHHHHHh
Q 001020 334 RDK---QVLKNCRVDG--IYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 334 R~~---~v~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 365 (1187)
-.. .-...+|... ++..+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 332 2222234333 5677788999998888764
No 175
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.05 E-value=4.3e-05 Score=71.81 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCC
Q 001020 847 LRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 847 l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp 911 (1187)
++.++.|+|++|.++++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..++ .+..||
T Consensus 76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid 139 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEID 139 (177)
T ss_pred cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccCc
Confidence 3467778888888888888888888888888888888888887777888888877764 344444
No 176
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.00012 Score=76.38 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=21.5
Q ss_pred cCCCCCCCEEeccCCCCCccCCc----ccCCcccccEEEcccCccc
Q 001020 770 LCKLKSLQHLNLFGCTKVERLPD----EFGNLEALMEMKAVRSSIR 811 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~n~i~ 811 (1187)
+-++|.|++.+||.|..-...|+ .++.-+.|.+|.+.+|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44556666666666554444433 2333445555555555544
No 177
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.00087 Score=67.66 Aligned_cols=84 Identities=19% Similarity=0.129 Sum_probs=44.4
Q ss_pred CCcccccEEEcccCcccccchhhhc-CCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc----cccCC
Q 001020 795 GNLEALMEMKAVRSSIRELPSSIVQ-LNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP----NSLGQ 869 (1187)
Q Consensus 795 ~~l~~L~~L~l~~n~i~~lp~~l~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~----~~l~~ 869 (1187)
..++.|..|.+.+|.|+.+.+.+.. +++|+.|.+.+|+.... ..+..+..+|.|++|.+-+|.+.+-. ..+..
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--GDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh--hhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 3344445555555555544443332 34455555555444332 12333556666777777777665422 23456
Q ss_pred CCCCcEEECcc
Q 001020 870 LSSLHILFRDR 880 (1187)
Q Consensus 870 l~~L~~L~L~~ 880 (1187)
+|+|+.||..+
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 78888888765
No 178
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.006 Score=74.68 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=42.9
Q ss_pred cCCCCCccchHHHHHHHHHhhccCC---CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGS---KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
|...++++|-+..++++..++.... ...+++.|+|++|.||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456789999999999999886432 3346899999999999999999997653
No 179
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0069 Score=77.34 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=90.8
Q ss_pred CCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
.+++.|++..++++.+++.. +-...+-|.++|++|.||||||+++++.....| +.+ +..+.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhccc
Confidence 35688999999888876632 112245688999999999999999998775433 222 221111110
Q ss_pred CC-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCCC-CCCc
Q 001020 263 GG-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDWF-TSGS 327 (1187)
Q Consensus 263 ~~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~~-~~gs 327 (1187)
.+ ...-.+.++.. .....+.+|+||+++.. .....|...+... ..+.
T Consensus 253 ~g~~~~~l~~lf~~------------------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 253 YGESEERLREIFKE------------------AEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ccHHHHHHHHHHHH------------------HHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 01111111111 11234568899997542 1123333333222 2333
Q ss_pred EEEE-EeCChh-hhhh----cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc
Q 001020 328 RIII-TTRDKQ-VLKN----CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP 392 (1187)
Q Consensus 328 rIIi-TTR~~~-v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP 392 (1187)
.++| ||.... +-.. ...+..+.+...+.++..+++..+.-....... .....+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCC
Confidence 4444 444322 1111 123567888888989888888865422211101 12445666666653
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.97 E-value=0.003 Score=79.37 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 174 LIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 174 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+++...++..+-.. ...+.++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a~~---g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLARV---GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHHc---CCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444444444433221 223569999999999999887632 23456899999999999999998753
No 181
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.016 Score=69.38 Aligned_cols=186 Identities=20% Similarity=0.228 Sum_probs=102.4
Q ss_pred cchhhHHHHHHHHHHHHhhccccc-----------CCCCCccchHHHHHHHHHhhccC----CCCeEEEEEEecCcchHH
Q 001020 168 IRPESLLIEKIVGEILKRLNDMYR-----------TDNKDLIGVESSIRQIESLLSTG----SKDVYTLGIWGIGGIGKT 232 (1187)
Q Consensus 168 ~~~e~~~i~~i~~~i~~~l~~~~~-----------~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKT 232 (1187)
...|+..++...+-+..-.+.... .-..+-+|.+.-.++|.+.|... .-+-.+++++|++|+|||
T Consensus 285 ~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKT 364 (782)
T COG0466 285 MSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKT 364 (782)
T ss_pred CCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCch
Confidence 345666666665555433222211 11245789999999999988642 223469999999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHH
Q 001020 233 TLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQ 312 (1187)
Q Consensus 233 tLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~ 312 (1187)
.|++.++..+...|- ++-+..++..+.- +.=++..... +++. .....+....+.-|++||.++....
T Consensus 365 SLgkSIA~al~Rkfv-R~sLGGvrDEAEI----RGHRRTYIGa---mPGr-----IiQ~mkka~~~NPv~LLDEIDKm~s 431 (782)
T COG0466 365 SLGKSIAKALGRKFV-RISLGGVRDEAEI----RGHRRTYIGA---MPGK-----IIQGMKKAGVKNPVFLLDEIDKMGS 431 (782)
T ss_pred hHHHHHHHHhCCCEE-EEecCccccHHHh----cccccccccc---CChH-----HHHHHHHhCCcCCeEEeechhhccC
Confidence 999999998877773 2222233222110 0000111111 1110 0111124456778899999865321
Q ss_pred ------HHHHhccCC-----CC--------CCCcEE-EEEeCCh-h-h-hhhcCcceeEEecCCCHHHHHHHHHHhh
Q 001020 313 ------IKFLIGSLD-----WF--------TSGSRI-IITTRDK-Q-V-LKNCRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 313 ------l~~l~~~~~-----~~--------~~gsrI-IiTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
-.+|+..++ .| -.=|.| .|||-+. + + .+......++++.+-+.+|-++.-.+|.
T Consensus 432 s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 432 SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 222222221 00 012444 4555542 1 1 1123445689999999999888877765
No 182
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.011 Score=75.64 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=86.0
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
..+.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....+......
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~l~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPEILSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHHHhhccc
Confidence 4578888888877776531 112244588999999999999999999765443 1111111111100
Q ss_pred C-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--------------HHHHHHhccCCCC--CCC
Q 001020 264 G-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--------------EQIKFLIGSLDWF--TSG 326 (1187)
Q Consensus 264 ~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--------------~~l~~l~~~~~~~--~~g 326 (1187)
+ -....+.++.. .-...+.+|++|+++.. ..+..++..++.. ..+
T Consensus 529 Gese~~i~~~f~~------------------A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 529 GESEKAIREIFRK------------------ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred CcHHHHHHHHHHH------------------HHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 0 01111112111 11245678999998532 1133344444322 233
Q ss_pred cEEEEEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 327 SRIIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 327 srIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
--||.||...+.+.. -..+..+.++..+.++-.++|..+.-+
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS 637 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC
Confidence 445556655433321 135678999999999999999876543
No 183
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.012 Score=69.05 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=84.3
Q ss_pred HHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCC
Q 001020 202 SSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSV 281 (1187)
Q Consensus 202 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~ 281 (1187)
.-+.++.+.+.... .++.|.|+-++||||+++.+....... .+++......... ..+.+..+.+...
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~~~~~------ 90 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRAYIEL------ 90 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHHHHHh------
Confidence 33445555554332 299999999999999997766655444 4444322111111 1111222222111
Q ss_pred CCCccccchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhhh------cCcceeEEecCCCH
Q 001020 282 GIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKN------CRVDGIYEVEALLD 355 (1187)
Q Consensus 282 ~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~l~~L~~ 355 (1187)
... ++..++||.|.....|+.....+-..++. +|+||+-+..+... .|....+++-+|+.
T Consensus 91 ------------~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 91 ------------KER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred ------------hcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 111 78899999999999999888777666666 89999888644332 14456899999999
Q ss_pred HHHHHHH
Q 001020 356 YYALQLF 362 (1187)
Q Consensus 356 ~ea~~Lf 362 (1187)
.|-..+-
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9977654
No 184
>PRK08116 hypothetical protein; Validated
Probab=96.92 E-value=0.0022 Score=70.95 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=27.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
..+.++|.+|+|||.||.++++.+..+-..++|+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3588999999999999999999887654444554
No 185
>PRK12377 putative replication protein; Provisional
Probab=96.90 E-value=0.0077 Score=65.40 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=29.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
...+.++|.+|+|||+||.++++.+..+...+.|+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 35788999999999999999999887665555665
No 186
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.89 E-value=0.0012 Score=66.47 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=55.9
Q ss_pred cEEEccccccc-ccchHHHHHHHHhhC-CCcEEEeC-CCCC--CCcchHHHHHhhccccEEEEEecCCc
Q 001020 21 DVFLSFRGEDT-RDNFTSHLYAALCRK-NIETFIDN-QLIR--GDEISPALLDAIGGSKISVIIFSEGY 84 (1187)
Q Consensus 21 dvFis~~~~d~-~~~~~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~~~~~i~~s~~~i~v~S~~y 84 (1187)
-|||||+.++. ...+|..|++.|++. |+.|.+|. +... +..+..++.++++++...|+|.||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999998654 347899999999999 99999999 7644 78999999999999999999999655
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.012 Score=67.21 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=88.1
Q ss_pred Cccc-hHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEEEE
Q 001020 196 DLIG-VESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYFLQ 253 (1187)
Q Consensus 196 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~ 253 (1187)
.++| -+.-++.+...+..+. -.....++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 5566677777775432 23567899999999999999998865321 22222221
Q ss_pred echhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEE
Q 001020 254 NVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIII 331 (1187)
Q Consensus 254 ~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIi 331 (1187)
... ..-.+.++++.. ..+ .. ....+++=++|+|+++.. +....|+..+....+++.+|+
T Consensus 85 ~~~----~~i~id~ir~l~-~~~---~~-----------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 85 PDG----QSIKKDQIRYLK-EEF---SK-----------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred ccc----ccCCHHHHHHHH-HHH---hh-----------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 100 002222222211 110 00 012234556888988654 336667766666567888888
Q ss_pred EeCCh-hhhhhc-CcceeEEecCCCHHHHHHHHHHh
Q 001020 332 TTRDK-QVLKNC-RVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 332 TTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
+|.+. .+.... .....+++.+++.++..+.+...
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 87664 333322 33468999999999998887653
No 188
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.82 E-value=0.016 Score=62.81 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
...+.++|.+|+|||+||.++++.+...-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 35788999999999999999999876654455555
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0099 Score=68.30 Aligned_cols=134 Identities=19% Similarity=0.217 Sum_probs=77.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
....+.|||..|.|||.|++++.+......+...++-...+.. ...+...+... .. ... +...
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-----~~~~v~a~~~~------~~----~~F-k~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-----TNDFVKALRDN------EM----EKF-KEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-----HHHHHHHHHhh------hH----HHH-HHhh-
Confidence 3568999999999999999999998877776333322111111 11111111110 00 000 0111
Q ss_pred CceEEEEEcCCCCh-------HHHHHHhccCCCCCCCcEEEEEeCCh---------hhhhhcCcceeEEecCCCHHHHHH
Q 001020 297 RKKIIIVFDDVTCS-------EQIKFLIGSLDWFTSGSRIIITTRDK---------QVLKNCRVDGIYEVEALLDYYALQ 360 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~-------~~l~~l~~~~~~~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 360 (1187)
.-=++++||++-. +.+-.+...+. ..|-.||+|++.. .+...+...-++++.+++.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 2337889998431 12222222222 3445899999662 333344556789999999999999
Q ss_pred HHHHhhhCCC
Q 001020 361 LFSRHAFGQN 370 (1187)
Q Consensus 361 Lf~~~af~~~ 370 (1187)
.+..++....
T Consensus 252 iL~kka~~~~ 261 (408)
T COG0593 252 ILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhcC
Confidence 9988775444
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.024 Score=64.05 Aligned_cols=164 Identities=13% Similarity=0.138 Sum_probs=95.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEEEEechhhhccc
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYFLQNVREESERT 262 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~ 262 (1187)
.+.+.+.+..+. -.....+.|+.|+||+++|++++..+-.. .+...++... . ...
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~-~~~ 86 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--D-NKD 86 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--c-CCC
Confidence 344555554332 23467789999999999999999865221 1111112100 0 000
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCCh-hhh
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRDK-QVL 339 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~ 339 (1187)
-++.++++ +...+ ...-..+++=++|+|+++... ....|+..+..-.+++.+|++|.+. .++
T Consensus 87 I~id~iR~-l~~~~--------------~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~ll 151 (325)
T PRK06871 87 IGVDQVRE-INEKV--------------SQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALL 151 (325)
T ss_pred CCHHHHHH-HHHHH--------------hhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCc
Confidence 22233321 11111 000123455677789987653 4666777666666778888777664 444
Q ss_pred hhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 340 KNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
... .....+.+.+++.+++.+.+..... . .. ..+..++..++|.|+.
T Consensus 152 pTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~---~~---~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 152 PTIYSRCQTWLIHPPEEQQALDWLQAQSS--A---EI---SEILTALRINYGRPLL 199 (325)
T ss_pred hHHHhhceEEeCCCCCHHHHHHHHHHHhc--c---Ch---HHHHHHHHHcCCCHHH
Confidence 332 3346899999999999988877541 1 11 2355678889999953
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.77 E-value=0.028 Score=71.45 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred ccchhhHHHHHHHHHHHHhhcccccCC-----------CCCccchHHHHHHHHHhhcc----CCCCeEEEEEEecCcchH
Q 001020 167 AIRPESLLIEKIVGEILKRLNDMYRTD-----------NKDLIGVESSIRQIESLLST----GSKDVYTLGIWGIGGIGK 231 (1187)
Q Consensus 167 ~~~~e~~~i~~i~~~i~~~l~~~~~~~-----------~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGK 231 (1187)
...+|+..+....+-+..-.+.....+ ..+.+|.+.-.++|.++|.. +.....++.++|++|+||
T Consensus 283 ~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GK 362 (784)
T PRK10787 283 PMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGK 362 (784)
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCH
Confidence 345677777777776665444333222 23589999999999988763 112345899999999999
Q ss_pred HHHHHHHHHHhhccC
Q 001020 232 TTLAGAIFNRISNQF 246 (1187)
Q Consensus 232 TtLA~~v~~~~~~~F 246 (1187)
||+|+.++..+...|
T Consensus 363 Ttl~~~ia~~l~~~~ 377 (784)
T PRK10787 363 TSLGQSIAKATGRKY 377 (784)
T ss_pred HHHHHHHHHHhCCCE
Confidence 999999998765544
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.77 E-value=0.0077 Score=61.96 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
...+.||-++.++++.-.-.. ++.+-+.|.||+|+||||-+..+++.+-+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 345789999999988876543 45778899999999999999999987643
No 193
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.058 Score=60.81 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=95.6
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--------------------cCCceEEEEechhhhcccC
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--------------------QFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~~~~~~ 263 (1187)
.+++...+..+. -...+.+.|+.|+||+++|+.++..+-. ..+...++.... ....-
T Consensus 12 ~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I 88 (319)
T PRK06090 12 WQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSI 88 (319)
T ss_pred HHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcC
Confidence 344555554332 2347889999999999999999885421 112222221110 00002
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCCh-hhhh
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRDK-QVLK 340 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~ 340 (1187)
.+.++++ +...+ . .....+++=++|+|+++... ....|+..+..-.+++.+|++|.+. .++.
T Consensus 89 ~vdqiR~-l~~~~---~-----------~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (319)
T PRK06090 89 TVEQIRQ-CNRLA---Q-----------ESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLP 153 (319)
T ss_pred CHHHHHH-HHHHH---h-----------hCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 2233321 11110 0 00122344577888887643 4666776666666778777776664 4444
Q ss_pred hc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 341 NC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 341 ~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.. .....+.+.+++.+++.+.+.... . . .+..++..++|.|+....+
T Consensus 154 TI~SRCq~~~~~~~~~~~~~~~L~~~~-----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 154 TIVSRCQQWVVTPPSTAQAMQWLKGQG-----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHhcceeEeCCCCCHHHHHHHHHHcC-----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 32 334689999999999998886531 1 1 1356788999999876544
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.70 E-value=0.021 Score=64.05 Aligned_cols=154 Identities=21% Similarity=0.278 Sum_probs=80.7
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc-CChHHHHHHHhhccccCCCCCCccccchhhcc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT-GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKR 294 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 294 (1187)
.-.+.++|||++|.|||.+|++++.+....| +..+..+..... ..-+++.++++.... ...+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~-------------~~a~ 208 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAA-------------DIIK 208 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHH-------------HHhh
Confidence 3467999999999999999999999876544 222333322211 122233333333210 0001
Q ss_pred cCCceEEEEEcCCCCh------------HHH--HHHhccCC----------C----CCCCcEEEEEeCChhhhhh-----
Q 001020 295 LSRKKIIIVFDDVTCS------------EQI--KFLIGSLD----------W----FTSGSRIIITTRDKQVLKN----- 341 (1187)
Q Consensus 295 l~~kr~LlVLDDv~~~------------~~l--~~l~~~~~----------~----~~~gsrIIiTTR~~~v~~~----- 341 (1187)
-+++..+|++||++.. .++ ..|+...+ | ..++..||.||.+...+..
T Consensus 209 ~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRp 288 (413)
T PLN00020 209 KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRD 288 (413)
T ss_pred ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCC
Confidence 2568899999998521 111 23332211 1 2345667888866543321
Q ss_pred cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 342 CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 342 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
-..+..| ...+.++-.+++..+.-+...+ ..-..++++...|-|+
T Consensus 289 GRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 289 GRMEKFY--WAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCcee--CCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCc
Confidence 1223333 3456666677776654332222 1334455555555553
No 195
>PRK08181 transposase; Validated
Probab=96.69 E-value=0.0031 Score=69.32 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=27.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.-+.++|++|+|||.||.++++....+...+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999999776554445555
No 196
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.69 E-value=0.00026 Score=86.29 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=18.8
Q ss_pred CCEEeecCCCCCCcCC--CC---CCCCCeeecccccccccc
Q 001020 896 LFLLKLSYCERLQSLP--EL---PCNISDMDANCCTSLKEL 931 (1187)
Q Consensus 896 L~~L~L~~c~~L~~lp--~l---~~sL~~L~i~~C~~L~~l 931 (1187)
|+.|+++.|...+.-- .. -..+..+++.+|+....-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 6777777766443321 11 234555666666555443
No 197
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.029 Score=63.99 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=96.3
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc---------------------CCceEEEEechhhhccc
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ---------------------FEGSYFLQNVREESERT 262 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~~~~~ 262 (1187)
-+++...+..+. -.....+.|+.|+||+|+|.+++..+-.. .+...++..... ...
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~ 87 (334)
T PRK07993 11 YEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSS 87 (334)
T ss_pred HHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--ccc
Confidence 455556554432 23577899999999999999998865221 122222211100 000
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCC-hhhh
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRD-KQVL 339 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~ 339 (1187)
-.+.++++ +...+ ...-..+++=++|+|+++... ....|+..+..-.+++.+|++|.+ ..++
T Consensus 88 I~idqiR~-l~~~~--------------~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (334)
T PRK07993 88 LGVDAVRE-VTEKL--------------YEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLL 152 (334)
T ss_pred CCHHHHHH-HHHHH--------------hhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 22223222 11111 000223556678889887643 466677666666677877777766 4455
Q ss_pred hhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 340 KNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 340 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
... .....+.+.+++.+++.+.+.... .. + .+.+..++..++|.|...
T Consensus 153 pTIrSRCq~~~~~~~~~~~~~~~L~~~~---~~--~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 153 ATLRSRCRLHYLAPPPEQYALTWLSREV---TM--S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHhccccccCCCCCHHHHHHHHHHcc---CC--C---HHHHHHHHHHcCCCHHHH
Confidence 432 234578999999999988876542 11 1 134677899999999643
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.015 Score=67.97 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=40.8
Q ss_pred CCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.++=|++..+.++.+++.. +-.-.|=|.++|++|.|||.||++++.+..-.|
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 5678999999999887643 112356788999999999999999998775444
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.097 Score=59.07 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCC
Q 001020 297 RKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQN 372 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 372 (1187)
+++-++|+|+++... .-..|+..+..-.+++.+|++|.+ ..++... .....+.+..++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 456688899987653 355666666555678888777765 3444332 334578999999999988886531 1
Q ss_pred CCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 373 ADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 373 ~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
+ ...+..++..++|.|+....+.
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1336678999999998655443
No 200
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.02 Score=65.23 Aligned_cols=203 Identities=13% Similarity=0.167 Sum_probs=111.1
Q ss_pred CCCCccchHHHHHHHHHhhcc--CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCc--eEEEEechhhhcccCChHHH
Q 001020 193 DNKDLIGVESSIRQIESLLST--GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG--SYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l 268 (1187)
.+..++||+.++..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... .+++.+..-.... .....+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~-aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS-AIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH-HHHHHH
Confidence 456899999999999998853 34556788999999999999999999876554433 4666443211111 223334
Q ss_pred HHHHhhccccCCCCCCcc--ccchhhcccC-CceEEEEEcCCCChHH--HHHHhccCCCCC-CCcEEEEEeCC------h
Q 001020 269 RQKLFSEDESLSVGIPNV--GLNFRGKRLS-RKKIIIVFDDVTCSEQ--IKFLIGSLDWFT-SGSRIIITTRD------K 336 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~--~~~~~~~~l~-~kr~LlVLDDv~~~~~--l~~l~~~~~~~~-~gsrIIiTTR~------~ 336 (1187)
...+.... .....+. ........-+ ...+|+|||..|.... -+.|...+.|.. +++|+|+.--- .
T Consensus 227 ~~~~~q~~---~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 227 FSSLLQDL---VSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHh---cCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 44433222 1111111 0111111122 2479999998765432 222333333332 67777654221 1
Q ss_pred hhhhhcC-----cceeEEecCCCHHHHHHHHHHhhhCCCCC--CCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 337 QVLKNCR-----VDGIYEVEALLDYYALQLFSRHAFGQNQN--ADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 337 ~v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~af~~~~~--~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
..+.... ....+..++-+.++-.+++..+.-..... .....+-.|++++.-.|.+--||.+.-
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1122211 23578888999999999998886433221 012233334444444444444544443
No 201
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.02 Score=67.96 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=91.4
Q ss_pred ccchHHHHHHHHHhhc-----------cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc-cCC
Q 001020 197 LIGVESSIRQIESLLS-----------TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER-TGG 264 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~~ 264 (1187)
+=|.++..++|..... .+-...+-|..+|+||.|||++|+++++.-...|-.+ ...+-... ...
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv----kgpEL~sk~vGe 511 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV----KGPELFSKYVGE 511 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec----cCHHHHHHhcCc
Confidence 3346666666665332 1224467788999999999999999999877666322 00000000 011
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCCCCCCcEEEE
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDWFTSGSRIII 331 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~~~~gsrIIi 331 (1187)
-++..+.++.+. + +--+.++.||.++.. ..+..|+..++-......|+|
T Consensus 512 SEr~ir~iF~kA-----------------R-~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 512 SERAIREVFRKA-----------------R-QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred hHHHHHHHHHHH-----------------h-hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 122333333322 1 112366677766432 225566666654444444544
Q ss_pred ---EeCChhhhhhc----CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHH
Q 001020 332 ---TTRDKQVLKNC----RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSD 382 (1187)
Q Consensus 332 ---TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~ 382 (1187)
|-|...+-..+ ..++++.++.-+.+.-.++|..++-+-......++.++++
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 33443332221 3678899998888888999999986655442334455443
No 202
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.61 E-value=0.0038 Score=68.03 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=40.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|.+|.||||||+.++++++.+|+..+++..+.+.. ..+..+.+.+.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~ 121 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMK 121 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHH
Confidence 57899999999999999999999988888888887776543 22344444443
No 203
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.60 E-value=0.026 Score=67.50 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=82.8
Q ss_pred CCccchHHHHHHHHHhh---c-----cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC--C
Q 001020 195 KDLIGVESSIRQIESLL---S-----TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG--G 264 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L---~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~--~ 264 (1187)
.++.|.+...+.+.... . .+-...+-|.++|++|.|||.+|+++++.....| +..+......... .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChH
Confidence 46778776666555421 1 0112346788999999999999999998764333 1112211111000 0
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--------------HHHHHhccCCCCCCCcEEE
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--------------QIKFLIGSLDWFTSGSRII 330 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--------------~l~~l~~~~~~~~~gsrII 330 (1187)
-..+. +++.. .-...+.+|++|+++..- .+..+...+.....+.-||
T Consensus 304 e~~l~-~~f~~------------------A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 304 ESRMR-QMIRI------------------AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred HHHHH-HHHHH------------------HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11111 11111 112357889999986321 0122222222222334455
Q ss_pred EEeCChhh-----hhhcCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 331 ITTRDKQV-----LKNCRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 331 iTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
.||..... ......+..+.++..+.++-.++|..+..+
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 67755432 222245778999999999999999888754
No 204
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.044 Score=58.01 Aligned_cols=179 Identities=17% Similarity=0.112 Sum_probs=95.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchh----
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFR---- 291 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~---- 291 (1187)
++-+++.|+|.-|.|||+++|++...+..+=-+.+.+. ........+...+..+++..+...........
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 44569999999999999999966554432222222221 11134445566666655321111111111111
Q ss_pred -hcccCCce-EEEEEcCCCCh--HHHHHHh---ccCCCCCCCcEEEEEeCCh-------hhhhhc-Cccee-EEecCCCH
Q 001020 292 -GKRLSRKK-IIIVFDDVTCS--EQIKFLI---GSLDWFTSGSRIIITTRDK-------QVLKNC-RVDGI-YEVEALLD 355 (1187)
Q Consensus 292 -~~~l~~kr-~LlVLDDv~~~--~~l~~l~---~~~~~~~~gsrIIiTTR~~-------~v~~~~-~~~~~-~~l~~L~~ 355 (1187)
....++++ +.+++||..+. +.++.+. ..-.....-=+|+..-..+ .+.... ....+ |++.+++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 11346677 99999998543 3344433 2111111112243332221 111111 11224 99999999
Q ss_pred HHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhh
Q 001020 356 YYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGC 400 (1187)
Q Consensus 356 ~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~ 400 (1187)
++...++..+..+...+.+---.+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999988888765544431222235566788889999998877653
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0036 Score=63.35 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccc-cccCCccEEEcCCCCCC--cccCCCCCCCCccEEec
Q 001020 590 FSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGA-QQLVNLKYMDLSHSKQL--TEIPDLSLASNIEKLNL 666 (1187)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l--~~~p~l~~l~~L~~L~L 666 (1187)
....-.+++++|.+..++..-.++.|.+|.|.+|.|..+-..+ ..+++|+.|.|.+|.+. .++..+..||.|++|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445556666666666655556666666666666666665544 33455666666665432 12223555566666665
Q ss_pred CCCC
Q 001020 667 DGCS 670 (1187)
Q Consensus 667 ~~c~ 670 (1187)
-+|.
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 5543
No 206
>PRK10536 hypothetical protein; Provisional
Probab=96.52 E-value=0.0075 Score=64.79 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=39.7
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH-h-hccCCce
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR-I-SNQFEGS 249 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~ 249 (1187)
+...+.++......+..++.. ..+|.+.|.+|.|||+||.+++.+ + ...|+..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 335577888888888887753 248999999999999999998874 3 3445433
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.52 E-value=0.026 Score=62.49 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=26.2
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++++...+..+ +-|.+.|++|+|||++|++++....
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 44455555432 2566899999999999999998653
No 208
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.48 E-value=0.064 Score=68.83 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=40.1
Q ss_pred CCccchHHHHHHHHHhhcc----CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLST----GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
...+|.+...+++.+++.. +....+++.++|++|+|||++|+.++..+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3478998888888886642 222335789999999999999999999876554
No 209
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.002 Score=68.06 Aligned_cols=102 Identities=23% Similarity=0.176 Sum_probs=66.1
Q ss_pred CCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCC--CCC-CcccccCCCCCCcEEECccCCCccccc--cccCCCC
Q 001020 821 NNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDC--GIT-ELPNSLGQLSSLHILFRDRNNFERIPT--SIIHLTN 895 (1187)
Q Consensus 821 ~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~--~l~-~l~~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~ 895 (1187)
..|+.|++.++...+ +..+..+++|+.|.++.| ++. .++.....+|+|++|+|++|++..+.. .+..+.+
T Consensus 43 ~~le~ls~~n~gltt-----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-----LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhccceee-----cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344444444444333 223556778899999998 443 355555566999999999998875432 4677888
Q ss_pred CCEEeecCCCCCCcC------CCCCCCCCeeecccccc
Q 001020 896 LFLLKLSYCERLQSL------PELPCNISDMDANCCTS 927 (1187)
Q Consensus 896 L~~L~L~~c~~L~~l------p~l~~sL~~L~i~~C~~ 927 (1187)
|..|++.+|.-.+.- ..+.++|..|+-.++..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 999999998755511 12456777776665544
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.40 E-value=0.005 Score=60.98 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEecCcchHHHHHHHHHHHh
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
|.++|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887
No 211
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.39 E-value=0.0011 Score=69.54 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=52.0
Q ss_pred hhccCCCcEEeccCCCCCccccc----ccCCCCCCCEEeccCCCCCccCC-------------cccCCcccccEEEcccC
Q 001020 746 IECLSRLITLNLENCSRLECLSS----SLCKLKSLQHLNLFGCTKVERLP-------------DEFGNLEALMEMKAVRS 808 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~L~~~~~l~~lp-------------~~l~~l~~L~~L~l~~n 808 (1187)
+-.+++|+..+|++|-.-...|. .+.+-..|++|.+++|..-..-. .-..+-+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 45678888888888766555443 35667788888888765321111 11234466777777777
Q ss_pred cccccchh-----hhcCCCCCEEEccccCC
Q 001020 809 SIRELPSS-----IVQLNNLYRLSFERYQG 833 (1187)
Q Consensus 809 ~i~~lp~~-----l~~l~~L~~L~l~~~~~ 833 (1187)
.+...|.. +..-.+|+.+.+..|.+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 77655542 12224555555555543
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.35 E-value=0.031 Score=72.13 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=38.9
Q ss_pred CCCccchHHHHHHHHHhhccC------CC-CeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 194 NKDLIGVESSIRQIESLLSTG------SK-DVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
...++|.+..++.+...+... ++ ...++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 346899999998888876431 11 1247889999999999999999986643
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.34 E-value=0.019 Score=58.35 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=74.5
Q ss_pred chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--------------------cCCceEEEEechhh
Q 001020 199 GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--------------------QFEGSYFLQNVREE 258 (1187)
Q Consensus 199 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~ 258 (1187)
|-+..++.|.+.+..+. -...+.++|..|+||+|+|+++++.+-. ..+...++.....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 44566677777775442 2346789999999999999999985422 2333444421111
Q ss_pred hcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 259 SERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 259 ~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
. ..-.+.+++ .+..... . ....+++=++|+||++.. +....|+..+.....++++|++|++.
T Consensus 79 ~-~~i~i~~ir-~i~~~~~---~-----------~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 K-KSIKIDQIR-EIIEFLS---L-----------SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp S-SSBSHHHHH-HHHHHCT---S-----------S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred c-chhhHHHHH-HHHHHHH---H-----------HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 0 012334444 2322210 0 012345667889999764 44666776666567889999999885
Q ss_pred h-hhhhc-CcceeEEecCC
Q 001020 337 Q-VLKNC-RVDGIYEVEAL 353 (1187)
Q Consensus 337 ~-v~~~~-~~~~~~~l~~L 353 (1187)
. ++... .....+.+.++
T Consensus 143 ~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGS-HHHHTTSEEEEE---
T ss_pred HHChHHHHhhceEEecCCC
Confidence 4 33322 22345666554
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.31 E-value=0.0054 Score=67.67 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=29.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFLQ 253 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 253 (1187)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987665 44556664
No 215
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.31 E-value=0.0072 Score=70.14 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=42.0
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--cCCceEEE
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--QFEGSYFL 252 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~ 252 (1187)
.++++.+..++.+...|..+ +.|.++|++|+|||++|+++++.+.. .|..+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 45788899999998888643 36888999999999999999987754 34444444
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.0065 Score=59.74 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=26.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4789999999999999999998776554334444
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=96.29 E-value=0.0028 Score=69.72 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=25.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
..+.|+|++|+|||+||.+++......-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999987654433334444
No 218
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.28 E-value=0.0033 Score=64.94 Aligned_cols=34 Identities=35% Similarity=0.359 Sum_probs=25.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.-+.++|.+|+|||.||.++.+....+=..+.|+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 4689999999999999999998765543345555
No 219
>PRK04132 replication factor C small subunit; Provisional
Probab=96.28 E-value=0.087 Score=66.60 Aligned_cols=153 Identities=17% Similarity=0.159 Sum_probs=91.7
Q ss_pred Ee--cCcchHHHHHHHHHHHhhc-cCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceE
Q 001020 224 WG--IGGIGKTTLAGAIFNRISN-QFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKI 300 (1187)
Q Consensus 224 ~G--~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~ 300 (1187)
.| +.++||||+|.++++++-. .+...+.--+.... .++..+++.+-.... ... .-..+.-
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~----rgid~IR~iIk~~a~-~~~------------~~~~~~K 632 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE----RGINVIREKVKEFAR-TKP------------IGGASFK 632 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc----ccHHHHHHHHHHHHh-cCC------------cCCCCCE
Confidence 37 7889999999999998632 33322222233221 344455443322110 000 0012457
Q ss_pred EEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCCh-hhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCch
Q 001020 301 IIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRDK-QVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPS 376 (1187)
Q Consensus 301 LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~ 376 (1187)
++|+|+++... +...|...+.......++|++|.+. .+.... .....+++.+++.++..+.+.+.+-......+
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-- 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-- 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 99999998764 5666666666555677877776664 333221 23468999999999998888776543322211
Q ss_pred HHHHHHHHHHHhccCchhhH
Q 001020 377 YKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 377 ~~~l~~~i~~~~~GlPLal~ 396 (1187)
.+....|++.++|.+....
T Consensus 711 -~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 -EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 3567889999999874443
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.16 Score=57.83 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCC-hhhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCC
Q 001020 297 RKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRD-KQVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQN 372 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 372 (1187)
+++-++|+|+++.. .....|+..+..-.+++.+|++|.+ ..++... .....+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 44557788988754 4467777777666778877666655 4455432 334689999999999998887642 11
Q ss_pred CCchHHHHHHHHHHHhccCchhhHHH
Q 001020 373 ADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 373 ~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
+ ...++..++|.|+....+
T Consensus 207 --~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 --D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999654433
No 221
>PRK06526 transposase; Provisional
Probab=96.25 E-value=0.0054 Score=67.04 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=23.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.-+.++|++|+|||+||.++.......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 468999999999999999999876543
No 222
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.23 E-value=0.00051 Score=64.77 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=57.7
Q ss_pred CeeEEEecCCCCCCCCCcc--cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYI--HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 669 (1187)
+|...++++|.++++|..| .++.+..|+|.+|.|..+|.++..++.|+.|+++.|.+......+..+.+|-.|+..+|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 5667788888888888887 45578888888888888888888888888888888875544434545666666666553
No 223
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.22 E-value=0.015 Score=60.88 Aligned_cols=128 Identities=19% Similarity=0.169 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh--hccCCceEEEEechhhhccc-CChHHHHHHH------
Q 001020 202 SSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI--SNQFEGSYFLQNVREESERT-GGLSQLRQKL------ 272 (1187)
Q Consensus 202 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~~~~~~-~~l~~l~~~l------ 272 (1187)
.+-+...+.|. +..+|.+.|++|.|||.||.+.+-+. ..+|+..++....-+..... +.--.+.+++
T Consensus 7 ~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 33444444443 34589999999999999999887642 45677776664433211110 0000111111
Q ss_pred -hhcccc-CCCCCCcccc------chhhcccCCc---eEEEEEcCCCC--hHHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 273 -FSEDES-LSVGIPNVGL------NFRGKRLSRK---KIIIVFDDVTC--SEQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 273 -l~~~~~-~~~~~~~~~~------~~~~~~l~~k---r~LlVLDDv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
...+.. .+....+... ......++++ .-+||+|++.+ .+++..++.. .+.||+||++--..
T Consensus 83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 83 IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 111100 1111100000 0000144444 46999999854 4567777655 47999999987654
No 224
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.21 E-value=0.032 Score=69.77 Aligned_cols=127 Identities=23% Similarity=0.195 Sum_probs=70.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc--cCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER--TGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~--~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
+-|.++|++|.||||+|+.++.+....|- .+ ........ ..+...++..+ .. ...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~i-s~~~~~~~~~g~~~~~~~~~f-~~------------------a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TI-SGSDFVEMFVGVGASRVRDMF-EQ------------------AKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EE-ehHHhHHhhhcccHHHHHHHH-HH------------------HHh
Confidence 34889999999999999999987654431 11 11111000 01111121111 11 122
Q ss_pred CceEEEEEcCCCChH----------------HHHHHhccCCCCC--CCcEEEEEeCChhhhhh-----cCcceeEEecCC
Q 001020 297 RKKIIIVFDDVTCSE----------------QIKFLIGSLDWFT--SGSRIIITTRDKQVLKN-----CRVDGIYEVEAL 353 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~~----------------~l~~l~~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L 353 (1187)
..+.+|++|+++... .+..++..++.+. .+.-+|.||...+.+.. -..+..+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 356789999985531 1334443333332 23344556766543321 134678889999
Q ss_pred CHHHHHHHHHHhhhC
Q 001020 354 LDYYALQLFSRHAFG 368 (1187)
Q Consensus 354 ~~~ea~~Lf~~~af~ 368 (1187)
+.++-.+++..+.-.
T Consensus 323 d~~~R~~Il~~~~~~ 337 (644)
T PRK10733 323 DVRGREQILKVHMRR 337 (644)
T ss_pred CHHHHHHHHHHHhhc
Confidence 998888898887644
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.20 E-value=0.008 Score=68.18 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=28.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..+.++|.+|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57999999999999999999998766544566663
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.19 E-value=0.0039 Score=59.99 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 227
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.18 E-value=0.04 Score=57.87 Aligned_cols=171 Identities=22% Similarity=0.237 Sum_probs=96.2
Q ss_pred CCCccchHHHHHH---HHHhhcc----CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc--cCC
Q 001020 194 NKDLIGVESSIRQ---IESLLST----GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER--TGG 264 (1187)
Q Consensus 194 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~--~~~ 264 (1187)
.++.||.+....+ |.+.|.. +.-..+-|..+|++|.|||.+|+++++....-|- .....+.... ..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l----~vkat~liGehVGdg 195 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL----LVKATELIGEHVGDG 195 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE----EechHHHHHHHhhhH
Confidence 3568888766544 5556643 2234678999999999999999999987654331 1111110000 011
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC--------------hHHHHHHhccCCCC--CCCcE
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC--------------SEQIKFLIGSLDWF--TSGSR 328 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~--------------~~~l~~l~~~~~~~--~~gsr 328 (1187)
..++.+..-. .-+.-++.+.+|.++. .+.+.+|+..++.. +.|..
T Consensus 196 ar~Ihely~r-------------------A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 196 ARRIHELYER-------------------ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHHHHH-------------------HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1122111100 1123467888887743 23356666665533 34555
Q ss_pred EEEEeCChhhhhhc---CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 329 IIITTRDKQVLKNC---RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 329 IIiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.|-.|-...++... ....-++....+++|-.+++..++-.-..|-... .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 56666655544321 3345678888899999999998886544442222 33445555554
No 228
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.15 E-value=0.00061 Score=83.10 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=35.0
Q ss_pred ccCCCCCCEEeecCCCCCCcCCCCCCCCCeeeccccccc-ccccCCccccCCCCCCCCceeeecCCCCChHHHHHH
Q 001020 890 IIHLTNLFLLKLSYCERLQSLPELPCNISDMDANCCTSL-KELSGLSILFTPTTWNSQGLNFINCFNLDGDELKEI 964 (1187)
Q Consensus 890 l~~L~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L-~~l~~~~~~~~~~~~~l~~L~~~~C~~L~~~~~~~i 964 (1187)
+.++++|+.+.|..|. ..... ..+.+.+|+.| ..+....... ..++.|++..|..++...+...
T Consensus 358 ~~~~~~l~~~~l~~~~-~~~~~------~~~~l~gc~~l~~~l~~~~~~~----~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG-ISDLG------LELSLRGCPNLTESLELRLCRS----DSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred HhcCCCcchhhhhhhh-ccCcc------hHHHhcCCcccchHHHHHhccC----CccceEecccCccccccchHHH
Confidence 3455555555555554 22211 15667788888 3333211111 1256788888888877665554
No 229
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.13 E-value=0.062 Score=63.29 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcccccCccccccchhhHHHHHHHHHHHHhhcccccCCCCCccchHHHH----HHHHHhhccCC------
Q 001020 146 KLESWRIALREAANLSGFASHAIRPESLLIEKIVGEILKRLNDMYRTDNKDLIGVESSI----RQIESLLSTGS------ 215 (1187)
Q Consensus 146 ~v~~wr~aL~~~a~~~g~~~~~~~~e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~----~~l~~~L~~~~------ 215 (1187)
.++.++.||-++- -..+.++++++.+.++...... ...+-.++..+ +++.+.+....
T Consensus 26 ~l~ei~~aLl~ad-----------V~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~ 92 (437)
T PRK00771 26 VVKDIQRALLQAD-----------VNVKLVKELSKSIKERALEEEP--PKGLTPREHVIKIVYEELVKLLGEETEPLVLP 92 (437)
T ss_pred HHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHHhcccc--cccCCcHHHHHHHHHHHHHHHhCCCccccccC
Confidence 4556677766431 2335567777777655433211 11222222222 34445554321
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
....+|.++|.+|+||||+|..++..+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 246789999999999999999999877654
No 230
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.08 E-value=0.0047 Score=69.70 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=41.0
Q ss_pred CCccchHHHHHHHHHhhccC----CCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLSTG----SKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++++|.++.++++.+++... ....++++++|++|.||||||+++++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47999999999999988542 23457899999999999999999998664
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.061 Score=61.30 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+.++|+++|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999998876543
No 232
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.038 Score=65.82 Aligned_cols=161 Identities=20% Similarity=0.180 Sum_probs=83.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
..-|.|.|..|+|||+||+++++.+...-.++ +.-+.........++.+|+.+..-. ...+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~h--v~~v~Cs~l~~~~~e~iQk~l~~vf---------------se~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAH--VEIVSCSTLDGSSLEKIQKFLNNVF---------------SEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceE--EEEEechhccchhHHHHHHHHHHHH---------------HHHHhh
Confidence 34688999999999999999999876543332 2222221112234666666554332 114556
Q ss_pred ceEEEEEcCCCChH--------H----HHHHhccC----C-CCCCCcEE--EEEeCChhhhh-----hcCcceeEEecCC
Q 001020 298 KKIIIVFDDVTCSE--------Q----IKFLIGSL----D-WFTSGSRI--IITTRDKQVLK-----NCRVDGIYEVEAL 353 (1187)
Q Consensus 298 kr~LlVLDDv~~~~--------~----l~~l~~~~----~-~~~~gsrI--IiTTR~~~v~~-----~~~~~~~~~l~~L 353 (1187)
.+-+|||||++-.. | .+.+...+ . ....+.+| |-|....+-+. ..-......++.+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 78899999985321 1 11111111 0 11234443 33444332221 1123446788888
Q ss_pred CHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC-chhhHHH
Q 001020 354 LDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV-PLALKVL 398 (1187)
Q Consensus 354 ~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~~ 398 (1187)
+.++-.++++...-+ ... ....+...-+..+|+|. |.-+.++
T Consensus 574 ~~~~R~~IL~~~~s~-~~~--~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSK-NLS--DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred chhHHHHHHHHHHHh-hhh--hhhhHHHHHHHHhcCCccchhHHHH
Confidence 888777776654322 211 11112222366667664 4444443
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.11 Score=59.24 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChh-hhhhc-CcceeEEecCCCHHHHHHHHHHh
Q 001020 297 RKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQ-VLKNC-RVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
+.|++ |+|+++.. .....+...+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34554 55887654 334444443333345676777777743 43321 23457899999999998888654
No 234
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.16 Score=60.40 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc----CC--ceEEEE---------echh
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ----FE--GSYFLQ---------NVRE 257 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~--~~~~~~---------~~~~ 257 (1187)
..+++||-+.-.+.|...+..+.- ..--...|+-|+||||+||.++..+-.. .+ ..|..+ ++-+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri-~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE 92 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRI-AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE 92 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcc-hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh
Confidence 446789999999999998875431 2234578999999999999998754111 11 111110 0000
Q ss_pred hhc-ccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeC
Q 001020 258 ESE-RTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTR 334 (1187)
Q Consensus 258 ~~~-~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR 334 (1187)
... ...++.++++-. ... .-.-..++.=+.|+|.|... ..+..|+..+....+....|..|.
T Consensus 93 iDaASn~gVddiR~i~-e~v--------------~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 93 IDAASNTGVDDIREII-EKV--------------NYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred hhhhhccChHHHHHHH-HHh--------------ccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 000 001222221111 100 00023455567788999765 458888887776566666677666
Q ss_pred Ch-hhhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhcc
Q 001020 335 DK-QVLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQG 390 (1187)
Q Consensus 335 ~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~G 390 (1187)
+. .+... ....+.|.++.++.++-...+...+-....... .+....|++..+|
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~G 212 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEG 212 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCC
Confidence 64 33222 233467999999999998888887755443312 2344445555554
No 235
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.092 Score=60.68 Aligned_cols=149 Identities=22% Similarity=0.253 Sum_probs=79.5
Q ss_pred CCccchHH---HHHHHHHhhccC-------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc--c
Q 001020 195 KDLIGVES---SIRQIESLLSTG-------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER--T 262 (1187)
Q Consensus 195 ~~~vGr~~---~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~--~ 262 (1187)
++.-|.|+ |+++|.+.|... ..=.+=|.++|++|.|||-||++++-...-. +|...-.+.... .
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFDEMFVG 379 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchhhhhhc
Confidence 34566665 455566666532 1224568899999999999999998653222 222222221111 0
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCCCCCCcEE
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~~~~gsrI 329 (1187)
.+.++++.-+ .+ .-..-++.|.+|.++.. ..+.+|+..++-|.+..-|
T Consensus 380 vGArRVRdLF-~a------------------Ak~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 380 VGARRVRDLF-AA------------------AKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred ccHHHHHHHH-HH------------------HHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 2333333222 21 12345788899987542 2267777777777655444
Q ss_pred EE--EeCChhhhh-hc----CcceeEEecCCCHHHHHHHHHHhh
Q 001020 330 II--TTRDKQVLK-NC----RVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 330 Ii--TTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
|| .|-..+.+. .. ..+..+.|+..+..--.++|..+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 43 233222222 11 334566666666555555555554
No 236
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.89 E-value=0.17 Score=61.79 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999988888776533334578899999999999999998753
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.12 Score=63.63 Aligned_cols=176 Identities=22% Similarity=0.255 Sum_probs=101.6
Q ss_pred CCCCccchHHHHHHHHHh---hcc-------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEech-hhhcc
Q 001020 193 DNKDLIGVESSIRQIESL---LST-------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVR-EESER 261 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~---L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~-~~~~~ 261 (1187)
..+++.|.++..++|++. |.. +..-.+=|.++|++|.|||-||++++-.-.=- |+.... +....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~svSGSEFvE~ 383 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSVSGSEFVEM 383 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eeeechHHHHHH
Confidence 346788988777766664 432 11235668899999999999999999754322 222221 11111
Q ss_pred cCCh-HHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC-----------------hHHHHHHhccCCCC
Q 001020 262 TGGL-SQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC-----------------SEQIKFLIGSLDWF 323 (1187)
Q Consensus 262 ~~~l-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~-----------------~~~l~~l~~~~~~~ 323 (1187)
.-+. ....+.++... -...+..+.+|+++. ...+.+|+...+-+
T Consensus 384 ~~g~~asrvr~lf~~a------------------r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLA------------------RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred hcccchHHHHHHHHHh------------------hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 0010 11122222221 122344555554421 22377788777766
Q ss_pred CCCcEEE--EEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 324 TSGSRII--ITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 324 ~~gsrII--iTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
..+..|| -+|...+++.. -..++.+.++..+.....++|..|+-..... .+..++++ ++...-|.+=|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 6555343 34444444332 2456789999999999999999998554432 34456666 88888887754
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=95.86 E-value=0.11 Score=59.16 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=24.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999888866543
No 239
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.035 Score=60.19 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=27.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh----hccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI----SNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~ 252 (1187)
-|+|.++|++|.|||+|.+++++++ .++|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 5789999999999999999999964 3445444444
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.85 E-value=0.045 Score=60.60 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+.++++++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998775543333333
No 241
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.82 E-value=0.021 Score=64.85 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=56.8
Q ss_pred HHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC-ceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCc
Q 001020 207 IESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE-GSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPN 285 (1187)
Q Consensus 207 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~ 285 (1187)
+.+.+..-. .-+.++|+|.+|+|||||++.+++.+..+.+ ..+++..+.+.. ....++.+.+...+.....+...
T Consensus 123 vID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~---~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 123 VVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP---EEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC---CCHHHHHHHHhhhEEeecCCCCH
Confidence 455443211 2245689999999999999999998876553 333443444422 44566666665543111100111
Q ss_pred ---cccc----h--hhcccCCceEEEEEcCCCCh
Q 001020 286 ---VGLN----F--RGKRLSRKKIIIVFDDVTCS 310 (1187)
Q Consensus 286 ---~~~~----~--~~~~l~~kr~LlVLDDv~~~ 310 (1187)
.... . ...+-.+++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 0000 0 01134689999999998544
No 242
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.028 Score=69.35 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=70.7
Q ss_pred CCccchHHHHHHHHHhhccC-------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH
Q 001020 195 KDLIGVESSIRQIESLLSTG-------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
..++|-+..++.+.+.+... .....+....|+.|+|||.||++++..+-+.=+.-+-+ +.++.... +.+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~Ek-HsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEK-HSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHH-HHHHH
Confidence 46899999999988877432 12345677799999999999999998774332333433 55554333 33332
Q ss_pred HHHHHhhccccCCCCCCccc-cchhhcccCCceE-EEEEcCCCC--hHHHHHHhccCCC
Q 001020 268 LRQKLFSEDESLSVGIPNVG-LNFRGKRLSRKKI-IIVFDDVTC--SEQIKFLIGSLDW 322 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~-~~~~~~~l~~kr~-LlVLDDv~~--~~~l~~l~~~~~~ 322 (1187)
| .. .++...... .-.+....++++| +|.||.|+. ++.++.|+..++.
T Consensus 569 L----IG----aPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 569 L----IG----APPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred H----hC----CCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2 22 122221111 1122235677777 777899965 4456666655543
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.0094 Score=58.24 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=31.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc-CCc-eEEEEechhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ-FEG-SYFLQNVREE 258 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~ 258 (1187)
--|+|.||+|+||||+++.+++.++.+ |.. .+|...+++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g 47 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG 47 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC
Confidence 358999999999999999999988776 653 4555555543
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79 E-value=0.013 Score=59.41 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=26.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765444556653
No 245
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.74 E-value=0.078 Score=64.74 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=36.9
Q ss_pred CCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 194 NKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.++++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999987764332 345679999999999999999864
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.73 E-value=0.024 Score=63.88 Aligned_cols=35 Identities=34% Similarity=0.394 Sum_probs=27.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+-+.++|..|+|||.||.++++.+..+-..+.|+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45788999999999999999999876543345555
No 247
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.73 E-value=0.065 Score=68.34 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCccchHHHHHHHHHhhccC------CC-CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLSTG------SK-DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++|.+..++.+...+... ++ -..++.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46889999888888876531 11 234678999999999999999998773
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.00049 Score=72.38 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=62.1
Q ss_pred CCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccc--cccCCCCCC
Q 001020 820 LNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPT--SIIHLTNLF 897 (1187)
Q Consensus 820 l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~--~l~~L~~L~ 897 (1187)
+.+.+.|++.+|.... +..+..++.|+.|.||=|+++.+. .+..+++|++|+|..|.|.++.+ .+.+||+|+
T Consensus 18 l~~vkKLNcwg~~L~D-----Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH-----HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3445566666665433 222456778888888888887753 35677889999999998887765 568899999
Q ss_pred EEeecCCCCCCcCC
Q 001020 898 LLKLSYCERLQSLP 911 (1187)
Q Consensus 898 ~L~L~~c~~L~~lp 911 (1187)
.|.|..|+....-+
T Consensus 92 ~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 92 TLWLDENPCCGEAG 105 (388)
T ss_pred hHhhccCCcccccc
Confidence 99999888766544
No 249
>PRK06696 uridine kinase; Validated
Probab=95.71 E-value=0.013 Score=63.18 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhcc-CCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 200 VESSIRQIESLLST-GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 200 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
|++.+++|.+.+.. ......+|+|.|.+|.||||||+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44555555554432 23457899999999999999999999877543
No 250
>PRK08118 topology modulation protein; Reviewed
Probab=95.69 E-value=0.0076 Score=61.61 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=25.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhc---cCCceEE
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISN---QFEGSYF 251 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 251 (1187)
.|.|+|++|.||||||++++++..- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997643 3555554
No 251
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.17 Score=52.78 Aligned_cols=165 Identities=22% Similarity=0.345 Sum_probs=87.4
Q ss_pred cc-chHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhh-ccc-
Q 001020 197 LI-GVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREES-ERT- 262 (1187)
Q Consensus 197 ~v-Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~~~- 262 (1187)
+| |.+..+++|.+.+... -...+-|.++|++|.|||-||++||+.- .+.|+...+..- +..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYI 222 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHHHHHHHh
Confidence 44 4566777777655431 1345668899999999999999999643 344443322110 000
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------H-H--HHHHhccCCCCC--
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------E-Q--IKFLIGSLDWFT-- 324 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~-~--l~~l~~~~~~~~-- 324 (1187)
..-.++.+.++.. .-.+-+-.|..|.+++. + | .-.|+..++.|.
T Consensus 223 gegsrmvrelfvm------------------arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 223 GEGSRMVRELFVM------------------AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred hhhHHHHHHHHHH------------------HHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 0001111222111 11233455666666431 1 1 223444444332
Q ss_pred CCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHH
Q 001020 325 SGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRI 384 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i 384 (1187)
..-+||..|..-+++. .-..++.++.++.+.+.-.+++.-+.-+-+....-++..+|+++
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 4567887775544433 22456778888888888888887775443332233444555444
No 252
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.66 E-value=0.031 Score=57.07 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=30.7
Q ss_pred ccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 197 LIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
+||....++++.+.+..-...-.-|.|+|..|.||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777777777766432212245669999999999999999983
No 253
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.64 E-value=0.036 Score=71.23 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhcc------C-CCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 195 KDLIGVESSIRQIESLLST------G-SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|.+.-++.+.+.+.. . .....++.++|++|+|||.+|++++..+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5689999999998887632 1 1224578899999999999999999876443
No 254
>PRK07667 uridine kinase; Provisional
Probab=95.59 E-value=0.022 Score=59.92 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=31.2
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+++...+....+...+|||.|.+|.||||+|+.+...+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555544455689999999999999999999987754
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.59 E-value=0.091 Score=63.32 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=41.2
Q ss_pred CCccchHHHHHHHHHhhcc---CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 195 KDLIGVESSIRQIESLLST---GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++--.+.++++..||.. +....+++.+.|++|.||||.++.+++.+ .|+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEec
Confidence 3455556677788888854 23345799999999999999999999876 35555564
No 256
>PRK15115 response regulator GlrR; Provisional
Probab=95.57 E-value=2.2 Score=51.37 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=32.8
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
..++|....+.++.+....-...-..|.|.|.+|.|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 35788777776665544322222345779999999999999998874
No 257
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.56 E-value=0.0043 Score=65.58 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=23.1
Q ss_pred cCCCCCCCEEeccCC--CCCccCCcccCCcccccEEEcccCcccc
Q 001020 770 LCKLKSLQHLNLFGC--TKVERLPDEFGNLEALMEMKAVRSSIRE 812 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~--~~l~~lp~~l~~l~~L~~L~l~~n~i~~ 812 (1187)
+..|++|++|.++.| .....++-....+++|++|++++|.|+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 345566666666665 2333333334444666666666666553
No 258
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.081 Score=62.17 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=81.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
.=|.+||++|.|||-||++|++.-..+|-. +... .|...... +..-.+...+. +.-...
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFis------VKGP--------ELlNkYVG------ESErAVR~vFq-RAR~sa 604 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFIS------VKGP--------ELLNKYVG------ESERAVRQVFQ-RARASA 604 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEe------ecCH--------HHHHHHhh------hHHHHHHHHHH-HhhcCC
Confidence 457899999999999999999988777721 2110 11111110 00000111111 112356
Q ss_pred eEEEEEcCCCCh-------------HHHHHHhccCCCCC--CCcEEEEEeCChhhh-hh----cCcceeEEecCCCHHHH
Q 001020 299 KIIIVFDDVTCS-------------EQIKFLIGSLDWFT--SGSRIIITTRDKQVL-KN----CRVDGIYEVEALLDYYA 358 (1187)
Q Consensus 299 r~LlVLDDv~~~-------------~~l~~l~~~~~~~~--~gsrIIiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea 358 (1187)
+++|.+|.++.. ..+..|+..++... .|.-||-.|-..++. .. -..+.+.-|+..+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 889999988542 22556666655332 444555545433332 22 24567889999999999
Q ss_pred HHHHHHhhhCCCCC--CCchHHHHHH
Q 001020 359 LQLFSRHAFGQNQN--ADPSYKELSD 382 (1187)
Q Consensus 359 ~~Lf~~~af~~~~~--~~~~~~~l~~ 382 (1187)
.++++...-....| .+.++.++++
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhh
Confidence 99998887532222 2344555554
No 259
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.54 E-value=0.3 Score=60.15 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=39.2
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
....++|....++++.+.+..-...-..|.|+|..|.|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 44679999999999888775432233457799999999999999999753
No 260
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.082 Score=60.68 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=79.6
Q ss_pred CccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC---------------------CceEEEEe
Q 001020 196 DLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF---------------------EGSYFLQN 254 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~ 254 (1187)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777777777777653332333588999999999999999999765332 22222211
Q ss_pred chhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHH--HHHHhccCCCCCCCcEEEEE
Q 001020 255 VREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQ--IKFLIGSLDWFTSGSRIIIT 332 (1187)
Q Consensus 255 ~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~--l~~l~~~~~~~~~gsrIIiT 332 (1187)
.... .. .......+.+.... .. ....++.-++|+|+++.... ...+...+.......++|++
T Consensus 82 s~~~-~~-~i~~~~vr~~~~~~---~~-----------~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLR-KI-DIIVEQVRELAEFL---SE-----------SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccC-CC-cchHHHHHHHHHHh---cc-----------CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 1110 00 00112222222211 00 01136777899999986543 55566555555678888888
Q ss_pred eCCh-hhhhhc-CcceeEEecCCCH
Q 001020 333 TRDK-QVLKNC-RVDGIYEVEALLD 355 (1187)
Q Consensus 333 TR~~-~v~~~~-~~~~~~~l~~L~~ 355 (1187)
|... .+.... .....+++.+.+.
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred cCChhhccchhhhcceeeecCCchH
Confidence 8743 333321 2234566666333
No 261
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.50 E-value=0.015 Score=62.23 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=28.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.++|+|..|.|||||+..+.......|..+..+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 577999999999999999999899999655544
No 262
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.43 E-value=0.18 Score=52.76 Aligned_cols=117 Identities=22% Similarity=0.329 Sum_probs=69.5
Q ss_pred CCCCccchHHHHHHHHHhhc--cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLS--TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
....++|.+...+.+.+--. ...-...-|.+||--|.||+.|++++.+.+.+..-.- |..-++.. ..+..|.+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL--VEV~k~dl---~~Lp~l~~ 132 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRL--VEVDKEDL---ATLPDLVE 132 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeE--EEEcHHHH---hhHHHHHH
Confidence 33568999998888765221 1112234678999999999999999999988776542 22221111 22333333
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCC---ChHHHHHHhccCCC---CCCCcEEEEEeCC
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVT---CSEQIKFLIGSLDW---FTSGSRIIITTRD 335 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~---~~~~l~~l~~~~~~---~~~gsrIIiTTR~ 335 (1187)
++ +.+.+|+.|..||.. .......|...+.- ..|..-++..|.+
T Consensus 133 ~L---------------------r~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 133 LL---------------------RARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HH---------------------hcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 22 345789999999983 23335555544431 1233444544544
No 263
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.37 E-value=0.052 Score=70.33 Aligned_cols=51 Identities=18% Similarity=0.370 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHhhccC------CC-CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 195 KDLIGVESSIRQIESLLSTG------SK-DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|.+..++.+...+... ++ ...++.+.|+.|+|||++|+.++......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999988877532 11 13567899999999999999999876443
No 264
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.36 E-value=0.06 Score=60.98 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=25.4
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877644
No 265
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.012 Score=64.39 Aligned_cols=36 Identities=33% Similarity=0.289 Sum_probs=27.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 345788999999999999999999988332334444
No 266
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.34 E-value=2.5 Score=48.86 Aligned_cols=105 Identities=18% Similarity=0.064 Sum_probs=63.8
Q ss_pred ceEEEEEcCCCChH-----HHHHH---hccCCCCCCCcEEEEEeCChhhhh----hc--CcceeEEecCCCHHHHHHHHH
Q 001020 298 KKIIIVFDDVTCSE-----QIKFL---IGSLDWFTSGSRIIITTRDKQVLK----NC--RVDGIYEVEALLDYYALQLFS 363 (1187)
Q Consensus 298 kr~LlVLDDv~~~~-----~l~~l---~~~~~~~~~gsrIIiTTR~~~v~~----~~--~~~~~~~l~~L~~~ea~~Lf~ 363 (1187)
++-+||+|+..... .++.| +..+- ..+-.+||++|-+..... .+ .+.+.+.+...+.+-|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 46789999983321 12222 22211 135568999888853332 22 455688999999999999998
Q ss_pred HhhhCCCCC------------CC-----chHHHHHHHHHHHhccCchhhHHHhhhhc
Q 001020 364 RHAFGQNQN------------AD-----PSYKELSDRIIKFAQGVPLALKVLGCFLF 403 (1187)
Q Consensus 364 ~~af~~~~~------------~~-----~~~~~l~~~i~~~~~GlPLal~~~g~~L~ 403 (1187)
.+.-..... .. .....-....++..||-=.-|..+++.++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 887443110 00 12333445666777887777777777775
No 267
>PRK04296 thymidine kinase; Provisional
Probab=95.34 E-value=0.02 Score=60.03 Aligned_cols=109 Identities=17% Similarity=0.039 Sum_probs=57.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCcccc-chhhcc---
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGL-NFRGKR--- 294 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~-~~~~~~--- 294 (1187)
.++.|+|..|.||||+|..++.+...+-..++++. .. ...+ .+...+..++.... .. ..... ......
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~-~d~~-~~~~~i~~~lg~~~---~~--~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA-IDDR-YGEGKVVSRIGLSR---EA--IPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc-cccc-ccCCcEecCCCCcc---cc--eEeCChHHHHHHHHh
Confidence 47789999999999999999988765544444431 10 0001 22222222221111 00 00000 000001
Q ss_pred cCCceEEEEEcCCCC--hHHHHHHhccCCCCCCCcEEEEEeCChh
Q 001020 295 LSRKKIIIVFDDVTC--SEQIKFLIGSLDWFTSGSRIIITTRDKQ 337 (1187)
Q Consensus 295 l~~kr~LlVLDDv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 337 (1187)
..++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 223456899999854 344444443322 46889999999853
No 268
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.32 E-value=0.26 Score=54.30 Aligned_cols=197 Identities=14% Similarity=0.048 Sum_probs=98.4
Q ss_pred CccchH---HHHHHHHHhhccCC-CCeEEEEEEecCcchHHHHHHHHHHHhhccCCc------eEEEEechhhhcccCCh
Q 001020 196 DLIGVE---SSIRQIESLLSTGS-KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG------SYFLQNVREESERTGGL 265 (1187)
Q Consensus 196 ~~vGr~---~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~~l 265 (1187)
.+||-. .-++.+.++|.... ...+-+.|+|.+|+|||++++++...+...++. ++.+. ... ..+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-~P~----~p~~ 109 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-MPP----EPDE 109 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-cCC----CCCh
Confidence 455532 33455666665432 345678999999999999999999866544432 22332 211 1455
Q ss_pred HHHHHHHhhccccCCCCCCccccch--hhccc-CCceEEEEEcCCCCh------HH--HHHHhccCCCCCCCcEEEEEeC
Q 001020 266 SQLRQKLFSEDESLSVGIPNVGLNF--RGKRL-SRKKIIIVFDDVTCS------EQ--IKFLIGSLDWFTSGSRIIITTR 334 (1187)
Q Consensus 266 ~~l~~~ll~~~~~~~~~~~~~~~~~--~~~~l-~~kr~LlVLDDv~~~------~~--l~~l~~~~~~~~~gsrIIiTTR 334 (1187)
..+-..++..+...-.......... ....+ .-+--+||+|.+.+. +| .-+.+..+..--.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 5666666665421111111111100 00111 223447889999653 11 1111122221123345566666
Q ss_pred Chhhhhhc-----CcceeEEecCCCHHHH-HHHHHHhh--hCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 335 DKQVLKNC-----RVDGIYEVEALLDYYA-LQLFSRHA--FGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 335 ~~~v~~~~-----~~~~~~~l~~L~~~ea-~~Lf~~~a--f~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
+.--+-.. .....+.++....++- .+|+.... ..-..+..-...+++..|...++|+.=-+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 53221111 1124567777654444 44443221 1112222334568899999999998644443
No 269
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.30 E-value=0.053 Score=57.07 Aligned_cols=125 Identities=20% Similarity=0.229 Sum_probs=59.4
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCC
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGI 283 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~ 283 (1187)
.+.+...+..+ -+++.|.|.+|.||||+++.+...+...=..++++ .... .....|.+........+..-.
T Consensus 7 ~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~-apT~-----~Aa~~L~~~~~~~a~Ti~~~l 77 (196)
T PF13604_consen 7 REAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL-APTN-----KAAKELREKTGIEAQTIHSFL 77 (196)
T ss_dssp HHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE-ESSH-----HHHHHHHHHHTS-EEEHHHHT
T ss_pred HHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE-CCcH-----HHHHHHHHhhCcchhhHHHHH
Confidence 34455555432 35888999999999999999988665542233333 2211 122234443221100000000
Q ss_pred Cccccc-hhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChhhh
Q 001020 284 PNVGLN-FRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQVL 339 (1187)
Q Consensus 284 ~~~~~~-~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 339 (1187)
...... ........++-+||+|++... .++..+..... ..|+|+|+.--..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 78 YRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQLP 134 (196)
T ss_dssp TEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSHH
T ss_pred hcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchhc
Confidence 000000 000000234459999998654 35666666554 3578888876655443
No 270
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.14 E-value=0.078 Score=68.50 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=38.2
Q ss_pred CCccchHHHHHHHHHhhccC------CC-CeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 195 KDLIGVESSIRQIESLLSTG------SK-DVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
..++|-+..++.+...+... ++ ....+.++|+.|+|||+||+++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 56899999999988876421 11 1345678999999999999999987643
No 271
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.09 E-value=0.13 Score=60.03 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=24.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 35799999999999999999998766544
No 272
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.05 E-value=0.013 Score=57.85 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 198 IGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
||.-..++++.+.+..-......|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 455555666665554322233467899999999999999988743
No 273
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.38 Score=55.33 Aligned_cols=149 Identities=22% Similarity=0.249 Sum_probs=78.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
|-=.++|++|.|||++..++++.+. |+ ++.-...+. ..-.+ .+.|+... ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v----~~n~d-Lr~LL~~t--------------------~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEV----KLDSD-LRHLLLAT--------------------PN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccc----cCcHH-HHHHHHhC--------------------CC
Confidence 4456899999999999999998653 33 333233222 11223 23333322 23
Q ss_pred eEEEEEcCCCChH--------------------HHHHHhccCC--CCCC-CcEEEE-EeCChhhhh-----hcCcceeEE
Q 001020 299 KIIIVFDDVTCSE--------------------QIKFLIGSLD--WFTS-GSRIII-TTRDKQVLK-----NCRVDGIYE 349 (1187)
Q Consensus 299 r~LlVLDDv~~~~--------------------~l~~l~~~~~--~~~~-gsrIIi-TTR~~~v~~-----~~~~~~~~~ 349 (1187)
+-+||+.|++..- .+.-|+..++ |... +-|||| ||-..+-+. .-..+..++
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 4455556653321 0112222222 2222 347765 554443222 224456778
Q ss_pred ecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhh
Q 001020 350 VEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFL 402 (1187)
Q Consensus 350 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L 402 (1187)
+.-=+.+.-..||..+..... + + .+..+|.+...|.-+.=..++..|
T Consensus 367 mgyCtf~~fK~La~nYL~~~~-~-h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE-D-H----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC-C-c----chhHHHHHHhhcCccCHHHHHHHH
Confidence 888888888889888865433 1 2 355555555555544444444443
No 274
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.02 E-value=0.024 Score=67.24 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHHHhhc----cCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLS----TGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+++|++..++++.+.|. .-...-+++.++|++|+||||||+.+++-+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 368999999999999882 2234557999999999999999999998554
No 275
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.14 Score=59.13 Aligned_cols=123 Identities=24% Similarity=0.256 Sum_probs=73.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChH------HHHHHHhhccccCCCCCCccccch
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLS------QLRQKLFSEDESLSVGIPNVGLNF 290 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~------~l~~~ll~~~~~~~~~~~~~~~~~ 290 (1187)
....+.+.|++|.|||+||..++. ...|+.+-.+ +.... -++. .+.+.+-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKii---Spe~m--iG~sEsaKc~~i~k~F~----------------- 592 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKII---SPEDM--IGLSESAKCAHIKKIFE----------------- 592 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEe---ChHHc--cCccHHHHHHHHHHHHH-----------------
Confidence 456788999999999999999885 4578755433 22111 1111 1111111
Q ss_pred hhcccCCceEEEEEcCCCChHH------------HHHHhccCCCC-CCCcEE--EEEeCChhhhhhcCc----ceeEEec
Q 001020 291 RGKRLSRKKIIIVFDDVTCSEQ------------IKFLIGSLDWF-TSGSRI--IITTRDKQVLKNCRV----DGIYEVE 351 (1187)
Q Consensus 291 ~~~~l~~kr~LlVLDDv~~~~~------------l~~l~~~~~~~-~~gsrI--IiTTR~~~v~~~~~~----~~~~~l~ 351 (1187)
...+..--.||+||+...-+ ++.|.-.+... ..|-|. +-||....++..++. +..|+|+
T Consensus 593 --DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 593 --DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred --HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 12345567899999965433 33333222222 234444 457777888888764 4578999
Q ss_pred CCCH-HHHHHHHHHh
Q 001020 352 ALLD-YYALQLFSRH 365 (1187)
Q Consensus 352 ~L~~-~ea~~Lf~~~ 365 (1187)
.++. ++..+.++..
T Consensus 671 nl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEEL 685 (744)
T ss_pred ccCchHHHHHHHHHc
Confidence 9877 7777776654
No 276
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.00 E-value=0.072 Score=60.90 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHH
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
+.++|....++++.+.+..-...-.-|.|+|..|.||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999888888877654322334678999999999999999885
No 277
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.99 E-value=0.019 Score=55.77 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=20.6
Q ss_pred EEEEecCcchHHHHHHHHHHHh
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.95 E-value=0.026 Score=58.37 Aligned_cols=35 Identities=34% Similarity=0.646 Sum_probs=31.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
..+|.+.|+.|.||||+|+.++.++...+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 35899999999999999999999998787777776
No 279
>PRK10867 signal recognition particle protein; Provisional
Probab=94.94 E-value=0.24 Score=58.28 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999988876655
No 280
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.42 Score=50.28 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=97.3
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
.++=|.+..++++.+.+-. +-...+-|..+|++|.|||-+|++.+.+....|-.- .
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL-------------A 237 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL-------------A 237 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh-------------c
Confidence 4455666666666654321 112245678999999999999999887665544210 0
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------H-H--HHHHhccCCCCCCCc
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------E-Q--IKFLIGSLDWFTSGS 327 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~-~--l~~l~~~~~~~~~gs 327 (1187)
+ .+|.+.+...- ..-....+. -.-...+..|.+|.++.. + | .-.|+..++.|.+.-
T Consensus 238 g-PQLVQMfIGdG------AkLVRDAFa-LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~ 309 (424)
T KOG0652|consen 238 G-PQLVQMFIGDG------AKLVRDAFA-LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD 309 (424)
T ss_pred c-hHHHhhhhcch------HHHHHHHHH-HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc
Confidence 0 01111111110 000000000 011345677777876321 1 1 223455555555444
Q ss_pred --EEEEEeCChhh-----hhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhh
Q 001020 328 --RIIITTRDKQV-----LKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGC 400 (1187)
Q Consensus 328 --rIIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~ 400 (1187)
+||-.|..-++ +.+-..++.++.+..+.+.-.+++.-|.-+-....+.+++++++.--..-|.--.|+.+=|+
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence 55655543333 33335567788877777766777777776655554778888876543332222344444444
Q ss_pred hh
Q 001020 401 FL 402 (1187)
Q Consensus 401 ~L 402 (1187)
.+
T Consensus 390 Mi 391 (424)
T KOG0652|consen 390 MI 391 (424)
T ss_pred HH
Confidence 43
No 281
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.87 E-value=0.019 Score=54.62 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=20.4
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCc
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISNQFEG 248 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 248 (1187)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 282
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.81 E-value=0.024 Score=59.70 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=23.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+|||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 283
>PRK07261 topology modulation protein; Provisional
Probab=94.81 E-value=0.02 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 284
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.72 E-value=0.27 Score=57.82 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999988764
No 285
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.69 E-value=0.59 Score=56.38 Aligned_cols=196 Identities=14% Similarity=0.174 Sum_probs=101.5
Q ss_pred CCCCccchHHHHHHHHHhhcc--CC-CCeEEEEEEecCcchHHHHHHHHHHHhh--------ccCCceEEEEechhhhcc
Q 001020 193 DNKDLIGVESSIRQIESLLST--GS-KDVYTLGIWGIGGIGKTTLAGAIFNRIS--------NQFEGSYFLQNVREESER 261 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~~~~~ 261 (1187)
.+..+-+|+.+..+|.+.+.. .. ..-..+-|.|.+|.|||..+..|.+.+. ..|+. +.+...+=
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l---- 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRL---- 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceee----
Confidence 667899999999999998753 22 3345889999999999999999998543 12432 23322211
Q ss_pred cCChHHHHHHHhhccccCCCCCCccc--cchhhc-----ccCCceEEEEEcCCCChHH--HHHHhccCCCC-CCCcEEEE
Q 001020 262 TGGLSQLRQKLFSEDESLSVGIPNVG--LNFRGK-----RLSRKKIIIVFDDVTCSEQ--IKFLIGSLDWF-TSGSRIII 331 (1187)
Q Consensus 262 ~~~l~~l~~~ll~~~~~~~~~~~~~~--~~~~~~-----~l~~kr~LlVLDDv~~~~~--l~~l~~~~~~~-~~gsrIIi 331 (1187)
....++-..+..++ ........ ...+.. .-+.+..+|++|+++..-. -+.+-..++|. .++|+++|
T Consensus 469 -~~~~~~Y~~I~~~l---sg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 469 -ASPREIYEKIWEAL---SGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred -cCHHHHHHHHHHhc---ccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 22334444444442 22221111 111111 2345678999998754322 11222233443 47888766
Q ss_pred EeCCh-----------hhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 332 TTRDK-----------QVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 332 TTR~~-----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.+=.. .+....|. ..+..++-+.++-.+....+..+-..-.....+-+|++|+.-.|..-.|+.+.
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred EEecccccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 54321 11111121 24566666766666666554432211112222334444444444444444443
No 286
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.16 Score=53.02 Aligned_cols=154 Identities=25% Similarity=0.309 Sum_probs=79.5
Q ss_pred CccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCC
Q 001020 196 DLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGG 264 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 264 (1187)
+.=|.+-..+++.+.... +-+..|-|.++|++|.|||.||++|++.....| +..++..
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgse------ 224 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGSE------ 224 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccHH------
Confidence 344556555555553321 224467788999999999999999999776555 3333221
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HH---HHHHhccCCCCC--CC
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQ---IKFLIGSLDWFT--SG 326 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~---l~~l~~~~~~~~--~g 326 (1187)
-.++-+ .+ ..-.....++ -.-.+.+-.|.+|.|+.. +. +-.|+...+.|. ..
T Consensus 225 --fvqkyl-ge------gprmvrdvfr-lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n 294 (408)
T KOG0727|consen 225 --FVQKYL-GE------GPRMVRDVFR-LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN 294 (408)
T ss_pred --HHHHHh-cc------CcHHHHHHHH-HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc
Confidence 111111 11 1000111111 011344567777877432 11 223333334443 34
Q ss_pred cEEEEEeCC-hhh----hhhcCcceeEEecCCCHHHHHHHHHHhhhCCC
Q 001020 327 SRIIITTRD-KQV----LKNCRVDGIYEVEALLDYYALQLFSRHAFGQN 370 (1187)
Q Consensus 327 srIIiTTR~-~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 370 (1187)
.+||+.|.. ..+ +.--..+..++.+.-+..+-.-.|....-+-.
T Consensus 295 vkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ 343 (408)
T KOG0727|consen 295 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN 343 (408)
T ss_pred eEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhccc
Confidence 577776643 222 22223456777776666666666766554433
No 287
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.62 E-value=0.042 Score=54.81 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=28.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+|-|.|.+|.||||||+++..++...-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 5788999999999999999999998776666665
No 288
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.12 Score=55.87 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=26.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
...++|||++|.|||-+|++|+..+..+|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56899999999999999999999887666
No 289
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.50 E-value=0.087 Score=55.58 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=58.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE-EechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL-QNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
.+|.|+|+.|.||||++.++...+.......++. .+..+.. . ... ..+..+. ..+...... .......++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~-~~~----~~~i~q~-~vg~~~~~~-~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-H-ESK----RSLINQR-EVGLDTLSF-ENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-c-cCc----cceeeec-ccCCCccCH-HHHHHHHhcC
Confidence 3789999999999999999888776554444443 2211110 0 000 0011100 011111011 1111224555
Q ss_pred ceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhh
Q 001020 298 KKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVL 339 (1187)
Q Consensus 298 kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 339 (1187)
.+=.+++|.+.+.+.+....... ..|..++.|+-...+.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 67799999998888766544332 2455677777655443
No 290
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.43 E-value=0.12 Score=59.04 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 197 LIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
+||....++++.+.+..-...-.-|.|+|..|.||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 366666666666655432222345789999999999999999864
No 291
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.19 Score=52.94 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=27.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEech
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVR 256 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 256 (1187)
..+-|.++|++|.|||-+|++|+++.- .||+..+.
T Consensus 210 ppkgvllygppgtgktl~aravanrtd-----acfirvig 244 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIG 244 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehh
Confidence 345688999999999999999998763 46665554
No 292
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.37 E-value=0.039 Score=64.24 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=24.1
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
...+|.+.|.+|+||||+|.+++.+..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999998753
No 293
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.37 E-value=0.074 Score=62.51 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=38.2
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++|+++.++.+...+..+. -|.|.|++|+|||++|+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhc
Confidence 468999999999888776543 588999999999999999998654
No 294
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.27 E-value=0.034 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 295
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.27 E-value=0.067 Score=58.99 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+.|.|+|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987665
No 296
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.26 E-value=0.15 Score=64.43 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=38.5
Q ss_pred CCccchHHHHHHHHHhhccC------C-CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLSTG------S-KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++|-+..++.|...+... . .....+.++|++|+|||++|++++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999988877521 1 1235688999999999999999998774
No 297
>PRK03839 putative kinase; Provisional
Probab=94.25 E-value=0.033 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|.|.|++|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 298
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.25 E-value=2.7 Score=47.18 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=91.7
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--------c-CC-ceEEEEechhhhcccCChHHHHHHHhh
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--------Q-FE-GSYFLQNVREESERTGGLSQLRQKLFS 274 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-F~-~~~~~~~~~~~~~~~~~l~~l~~~ll~ 274 (1187)
+.+.+.+..+. -..+..++|..|.||+++|+++.+.+-. . .+ ...++ +..+ ..-.+.++++ +..
T Consensus 6 ~~l~~~i~~~~-l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-d~~g---~~i~vd~Ir~-l~~ 79 (299)
T PRK07132 6 KFLDNSATQNK-ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-DIFD---KDLSKSEFLS-AIN 79 (299)
T ss_pred HHHHHHHHhCC-CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-ccCC---CcCCHHHHHH-HHH
Confidence 34444443321 2356779999999999999999987621 1 11 12222 1101 1123334332 222
Q ss_pred ccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEEEeCC-hhhhhh-cCcceeEEe
Q 001020 275 EDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIIITTRD-KQVLKN-CRVDGIYEV 350 (1187)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~~~~~~~l 350 (1187)
.+ +... .-.+++=++|+|+++... ....|+..+....+.+.+|++|.+ ..+.+. .....++++
T Consensus 80 ~~---~~~~----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 80 KL---YFSS----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred Hh---ccCC----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 21 1000 112466678888886653 356676666666677877766644 455543 344578999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 351 EALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 351 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
.+++.++..+.+.... . ++ +.+..++..++|.=-|+..
T Consensus 147 ~~l~~~~l~~~l~~~~----~--~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSKN----K--EK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHcC----C--Ch---hHHHHHHHHcCCHHHHHHH
Confidence 9999999987776541 1 11 3455566666663344444
No 299
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.046 Score=65.31 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=43.6
Q ss_pred CCccchHHHHHHHHHhhcc----CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLST----GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.+-+|+++-.++|.+++.. ++-+-++++.+|++|+|||.+|+.++..+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3468999999999998864 334557999999999999999999999876666
No 300
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.21 E-value=1.2 Score=54.49 Aligned_cols=49 Identities=27% Similarity=0.168 Sum_probs=35.9
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
..+.++|....++++.+.+..-...-.-|.|+|..|.||+++|+++...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 4467999998888877665421112234779999999999999997653
No 301
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.053 Score=56.70 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=26.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 302
>PRK08233 hypothetical protein; Provisional
Probab=94.15 E-value=0.036 Score=57.61 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|.+|.||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998653
No 303
>PTZ00301 uridine kinase; Provisional
Probab=94.14 E-value=0.041 Score=58.33 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=24.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999998775444
No 304
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.45 Score=51.22 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCccchHHHHHHHHHhhc----------cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc-cC
Q 001020 195 KDLIGVESSIRQIESLLS----------TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER-TG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~ 263 (1187)
.++-|.+...+.|.+..- .....-+-|.++|++|.||+.||++|+......| |-...+.-... ..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF----FSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKWMG 208 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce----EEeehHHHHHHHhc
Confidence 457788888888877432 1223357789999999999999999998654333 21111110000 01
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh---------HHHHH-----Hhcc--CCCCCCCc
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS---------EQIKF-----LIGS--LDWFTSGS 327 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~---------~~l~~-----l~~~--~~~~~~gs 327 (1187)
.-+.|.++++.- .-.+|+-.|.+|.|+.. +.-.. |... ......|.
T Consensus 209 ESEkLVknLFem------------------ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 209 ESEKLVKNLFEM------------------ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred cHHHHHHHHHHH------------------HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 223444444332 12467888889988532 11222 2111 11123445
Q ss_pred EEEEEeCChhhhhhc---CcceeEEecCCCHHHHHHHHHHhhhCC
Q 001020 328 RIIITTRDKQVLKNC---RVDGIYEVEALLDYYALQLFSRHAFGQ 369 (1187)
Q Consensus 328 rIIiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~ 369 (1187)
-|+=.|....++... .....+.++..+...-..+|..+.+..
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~t 315 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDT 315 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCC
Confidence 555566666555432 234445555555555567888877544
No 305
>PRK00625 shikimate kinase; Provisional
Probab=94.10 E-value=0.037 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|.++||+|.||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 306
>PRK04040 adenylate kinase; Provisional
Probab=94.10 E-value=0.047 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=23.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|+|++|.||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 307
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.08 E-value=0.13 Score=65.31 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 194 NKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...++|....++++.+.+..-...-.-|.|+|..|.|||++|+++++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3479999988888876654322233468899999999999999998753
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.05 E-value=0.08 Score=61.24 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=36.4
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666544334568999999999999999999987766545666763
No 309
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.04 E-value=0.44 Score=57.69 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=35.2
Q ss_pred ccCCceEEEEEcC------CCChHHHHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEecC
Q 001020 294 RLSRKKIIIVFDD------VTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEVEA 352 (1187)
Q Consensus 294 ~l~~kr~LlVLDD------v~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~ 352 (1187)
.+..+.=++|||. ++..+.++..+..+ + +.||+.|-|+....... .+++.+++
T Consensus 453 ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~-Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 453 LLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----E-GTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----C-CeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 4556788999994 44455555555443 2 45888899988877653 56777764
No 310
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.04 E-value=0.41 Score=52.70 Aligned_cols=180 Identities=18% Similarity=0.189 Sum_probs=94.1
Q ss_pred HHHHhhcccccCCCCCccchHHHHHHHHHhhccC--CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhh
Q 001020 181 EILKRLNDMYRTDNKDLIGVESSIRQIESLLSTG--SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREE 258 (1187)
Q Consensus 181 ~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~ 258 (1187)
.+..++.. ....++|-.++..++..++... -++..-|.|+|+.|.|||+|.-....+ .+.|.-...+......
T Consensus 14 ~l~~rl~~----~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~ 88 (408)
T KOG2228|consen 14 ILRERLCG----PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGE 88 (408)
T ss_pred HHHHHhcC----CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECcc
Confidence 33444544 3356999999999999888531 123346789999999999997766554 3334333333333221
Q ss_pred hcc-cCChHHHHHHHhhccccCCCCCCcccc--------chhhcccCCceEEEEEcCCCChH----H--HHHHhccCC-C
Q 001020 259 SER-TGGLSQLRQKLFSEDESLSVGIPNVGL--------NFRGKRLSRKKIIIVFDDVTCSE----Q--IKFLIGSLD-W 322 (1187)
Q Consensus 259 ~~~-~~~l~~l~~~ll~~~~~~~~~~~~~~~--------~~~~~~l~~kr~LlVLDDv~~~~----~--l~~l~~~~~-~ 322 (1187)
... .-.+..+.+++..+............. ...+....+.++..|+|.++--. | +-.+..... .
T Consensus 89 ~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~ 168 (408)
T KOG2228|consen 89 LQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA 168 (408)
T ss_pred chhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc
Confidence 111 023445555555443222111111111 01122445567999999875421 2 222322211 1
Q ss_pred CCCCcEEEEEeCCh-------hhhhhcCcceeEEecCCCHHHHHHHHHHh
Q 001020 323 FTSGSRIIITTRDK-------QVLKNCRVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 323 ~~~gsrIIiTTR~~-------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
..|-+-|-+|||-. .|-....-..++-++.++-++-.++++..
T Consensus 169 r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 169 RAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 24566777899974 22222222235566666666666665544
No 311
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.02 E-value=0.046 Score=58.35 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 312
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.23 Score=60.66 Aligned_cols=151 Identities=22% Similarity=0.227 Sum_probs=85.0
Q ss_pred CccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc-C
Q 001020 196 DLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT-G 263 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~ 263 (1187)
...|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-.+.. .+..... .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~~l~sk~vG 318 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG----SELLSKWVG 318 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----HHHhccccc
Confidence 455566555555553321 11345578899999999999999999966555532211 1111110 1
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCCCCCCcE--
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDWFTSGSR-- 328 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~~~~gsr-- 328 (1187)
...+..++++.. ..+..+..|.+|.++.. .....++..++.....+.
T Consensus 319 esek~ir~~F~~------------------A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 319 ESEKNIRELFEK------------------ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred hHHHHHHHHHHH------------------HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 111222222221 12456788999988432 234445544443333333
Q ss_pred EEEEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 329 IIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 329 IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
||-||-....... ...+..+.++..+.++..+.|..+.-.
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 4444444332221 144678999999999999999998753
No 313
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.99 E-value=0.032 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=21.9
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccC
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
|-|+|.+|+|||++|+.++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 314
>PRK06762 hypothetical protein; Provisional
Probab=93.96 E-value=0.045 Score=56.00 Aligned_cols=24 Identities=38% Similarity=0.471 Sum_probs=22.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|.|.|++|.||||+|+++++++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 315
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.067 Score=54.47 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=24.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCce
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGS 249 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 249 (1187)
+.|.+.|.+|.||||+|++++..++++-..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 4577899999999999999998776654433
No 316
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.89 E-value=0.047 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|.++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 317
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.89 E-value=0.055 Score=57.61 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+...+|+|.|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 318
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=93.89 E-value=0.15 Score=48.85 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=52.6
Q ss_pred cEEEcccccccccchHHHHHHHHhhCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCC
Q 001020 21 DVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEG 83 (1187)
Q Consensus 21 dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 83 (1187)
.|||.|. +| ..+++.+...|+..|+.+.+-. ....|..+.+.+.+++.++..+||+++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899996 66 5789999999998899887655 67889999999999999999999999994
No 319
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.88 E-value=0.11 Score=55.93 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4556666544445679999999999999999999987755545566764
No 320
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.88 E-value=0.071 Score=57.73 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=26.4
Q ss_pred CCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 215 SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 215 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.....+|||.|+.|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3457899999999999999999999876543
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=93.82 E-value=0.21 Score=53.74 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=28.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999998876654545566663
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.81 E-value=0.59 Score=47.19 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
..|+++|++|+|||||...+..
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhc
Confidence 4678999999999999998874
No 323
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.81 E-value=0.1 Score=56.30 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEe
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQN 254 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 254 (1187)
..|.++|..+-..-.++.|+|.+|.|||++|.+++......-..++|+..
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34555665444456799999999999999999999877666667788753
No 324
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.77 E-value=0.085 Score=56.28 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=35.1
Q ss_pred hhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEe
Q 001020 210 LLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQN 254 (1187)
Q Consensus 210 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 254 (1187)
+|..+-..-+++.|+|.+|.|||++|.+++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444443456799999999999999999998877666677888853
No 325
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.65 E-value=0.32 Score=57.56 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh--ccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS--NQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~ 252 (1187)
.+++.++|++|+||||++..++.... ..-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 36899999999999999999887665 333344444
No 326
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.60 E-value=0.19 Score=55.55 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=54.6
Q ss_pred HHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCC
Q 001020 203 SIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVG 282 (1187)
Q Consensus 203 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~ 282 (1187)
.++.+..++... ..+|.|.|..|.||||+++++.+.+...-...+.+.+..+... .+. .+.. ....
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~-v~~~ 133 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQ-VNEK 133 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEE-eCCc
Confidence 344455555422 3489999999999999999988776442223344433322111 110 0100 1111
Q ss_pred CCccccchhhcccCCceEEEEEcCCCChHHHHHHh
Q 001020 283 IPNVGLNFRGKRLSRKKIIIVFDDVTCSEQIKFLI 317 (1187)
Q Consensus 283 ~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~ 317 (1187)
............++..+=.++++++.+.+....+.
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 00001111222566778889999999988765444
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.59 E-value=0.086 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=22.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|.+.|.-|.||||+++.++..+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999865
No 328
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.58 E-value=0.75 Score=58.12 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=35.8
Q ss_pred CCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 194 NKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+.++|....++++.+....-...-.-|.|+|..|.||+++|+++.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 456888888887777665432222234789999999999999999874
No 329
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.56 E-value=1.4 Score=53.59 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=36.6
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
..++|....+.++...+..-...-..|.|.|.+|.|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899988888877766433333446889999999999999998874
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.55 E-value=0.24 Score=49.25 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=25.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|.|..|.|||||++.+..... ...+.+++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 59 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTW 59 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEE
Confidence 4899999999999999999986432 23444554
No 331
>PHA00729 NTP-binding motif containing protein
Probab=93.49 E-value=0.07 Score=56.55 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+...|.|.|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 332
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.49 E-value=0.12 Score=62.06 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=46.3
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhccc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRL 295 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l 295 (1187)
..-++..++|++|+||||||..++++- .|. ++=+ +.+ .. .....+.+.+...+. ..... -.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEI-NAS---De-Rt~~~v~~kI~~avq--~~s~l---------~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEI-NAS---DE-RTAPMVKEKIENAVQ--NHSVL---------DA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEe-ccc---cc-ccHHHHHHHHHHHHh--hcccc---------cc
Confidence 457899999999999999999999753 232 1111 221 11 344455555554431 10000 11
Q ss_pred CCceEEEEEcCCCChH
Q 001020 296 SRKKIIIVFDDVTCSE 311 (1187)
Q Consensus 296 ~~kr~LlVLDDv~~~~ 311 (1187)
.+++.-||+|.++...
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 3678889999997654
No 333
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.49 E-value=0.057 Score=56.42 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=23.3
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
++++|+|.|++|.||||+|+.++.++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999765
No 334
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.48 E-value=0.057 Score=55.60 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..|.|+|++|.||||+|++++.++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998873
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.47 E-value=0.28 Score=56.88 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988654
No 336
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.46 E-value=0.057 Score=55.72 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999998875
No 337
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.44 E-value=0.35 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 338
>PRK13947 shikimate kinase; Provisional
Probab=93.37 E-value=0.057 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.|.|+|++|.||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999887543
No 339
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.091 Score=65.06 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=84.4
Q ss_pred CCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-CC-----ceEEEEechhhhcc---cCC
Q 001020 194 NKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-FE-----GSYFLQNVREESER---TGG 264 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~-----~~~~~~~~~~~~~~---~~~ 264 (1187)
.+.++||+.+++++.+.|......-+ .++|.+|+|||++|.-++.++... -+ ..++--++..-... ...
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 46799999999999999976543333 368999999999999999986432 21 12222222211000 011
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------HHHHHHh-ccCCCCCCCcEEEEEe
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------EQIKFLI-GSLDWFTSGSRIIITT 333 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------~~l~~l~-~~~~~~~~gsrIIiTT 333 (1187)
.+.-.+.++.++ -..+++.+.+|.+... .+...++ +.+. .|.--.|=-||
T Consensus 247 FEeRlk~vl~ev------------------~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 247 FEERLKAVLKEV------------------EKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred HHHHHHHHHHHH------------------hcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 111122222221 1233899999987432 1122233 3322 22233455666
Q ss_pred CChh--hhhh----cCcceeEEecCCCHHHHHHHHHHh
Q 001020 334 RDKQ--VLKN----CRVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 334 R~~~--v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
-++- .... ....+.+.|...+.+++.+.+...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 5531 1110 123457899999999999988654
No 340
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.36 E-value=0.3 Score=50.56 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=25.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|.|..|.|||||++.++-... .-.+.+++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 61 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITL 61 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEE
Confidence 4899999999999999999986432 23445554
No 341
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.004 Score=65.70 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=18.8
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccc
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKL 628 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l 628 (1187)
.|.+|.++-|.++++.....+.+|++|.|..|.|..+
T Consensus 42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred cceeEEeeccccccchhHHHHHHHHHHHHHhcccccH
Confidence 4455555555555555444555555555555554444
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.27 E-value=0.2 Score=53.77 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.++.+.+........+|||.|+||+|||||..++...++.+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444333333456899999999999999999998877654
No 343
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.16 E-value=0.94 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
...++|+|++|+|||||...+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999988864
No 344
>PRK06547 hypothetical protein; Provisional
Probab=93.12 E-value=0.084 Score=54.13 Aligned_cols=27 Identities=48% Similarity=0.526 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
....+|+|.|++|.||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999864
No 345
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.03 E-value=0.47 Score=47.59 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=58.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHh-hccccCCCC------CCccc--c-
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLF-SEDESLSVG------IPNVG--L- 288 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll-~~~~~~~~~------~~~~~--~- 288 (1187)
.+|-|++-.|-||||+|...+-+...+=..+.++.-+... .. .+-....+.+- -+....+.. +.... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~-~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WK-YGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-Cc-cCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 3677888889999999999888765553344443322221 01 23333333331 000001110 00000 0
Q ss_pred ----chhhcc-cCCceEEEEEcCCCCh-----HHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 289 ----NFRGKR-LSRKKIIIVFDDVTCS-----EQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 289 ----~~~~~~-l~~kr~LlVLDDv~~~-----~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
...... ..++-=|+|||++... -..+.+...+.....+.-||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 000112 2345569999998433 11233333333335678999999995
No 346
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.57 Score=52.44 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHhhccC------------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCc
Q 001020 195 KDLIGVESSIRQIESLLSTG------------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG 248 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 248 (1187)
.++-|.+..++++.+..... -...+-|.++|++|.|||.||++++.+-...|-.
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 45566777777776643211 0234568899999999999999999988877753
No 347
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.98 E-value=0.039 Score=35.11 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=9.4
Q ss_pred CcEEECccCCCccccccc
Q 001020 873 LHILFRDRNNFERIPTSI 890 (1187)
Q Consensus 873 L~~L~L~~n~l~~lp~~l 890 (1187)
|++|+|++|+|+.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 348
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.94 E-value=0.19 Score=55.59 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=44.8
Q ss_pred CCCCCccchHHHHHH---HHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCce
Q 001020 192 TDNKDLIGVESSIRQ---IESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGS 249 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 249 (1187)
...+.+||.....+. +.++...+.-.-+.|.|+|++|.|||+||..+++.+...-+.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 456789998766554 5566666554567899999999999999999999987665543
No 349
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.90 E-value=0.19 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
.+++|.|..|.|||||.+.++.... ...+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~ 60 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVD 60 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEC
Confidence 4899999999999999999986432 345556553
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.89 E-value=0.082 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
++|.+.|++|.||||+|+++..+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887543
No 351
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.86 E-value=0.11 Score=53.81 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+|+|.|.+|.||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 352
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.83 E-value=0.5 Score=52.15 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=62.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccc-------cc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVG-------LN 289 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~-------~~ 289 (1187)
+.+.++|+|..|.|||||.+.++..+... .+.+++.. ...... .....+..... . .++...... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~-d~~~ei~~~~~-~---~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIV-DERSEIAGCVN-G---VPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecc-hhHHHHHHHhc-c---cccccccccccccccchH
Confidence 35789999999999999999999766533 33333311 000000 01112222111 1 111111100 00
Q ss_pred h---hhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhh
Q 001020 290 F---RGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVL 339 (1187)
Q Consensus 290 ~---~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 339 (1187)
. ........+=++|+|.+...+.+..+...+. .|..||+||-+..+.
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 0 0012234678899999988887777765543 578899999876553
No 353
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.77 E-value=0.22 Score=51.23 Aligned_cols=121 Identities=22% Similarity=0.260 Sum_probs=62.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCC----cc--------
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIP----NV-------- 286 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~----~~-------- 286 (1187)
.+++|.|..|.|||||++.++.... ...+.+++... ... . .....+.+.+.- ..+... ..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~-~~~~~~~~~i~~----~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-Q-WDPNELGDHVGY----LPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-c-CCHHHHHhheEE----ECCCCccccCcHHHHCcCHH
Confidence 4899999999999999999986543 33455555321 100 0 111222222111 011100 00
Q ss_pred --ccchhhcccCCceEEEEEcCCCC------hHHHHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEec
Q 001020 287 --GLNFRGKRLSRKKIIIVFDDVTC------SEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEVE 351 (1187)
Q Consensus 287 --~~~~~~~~l~~kr~LlVLDDv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 351 (1187)
........+..++=+++||+-.. ...+..+...+. ..|..||++|.+..... . .++++.+.
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 00011124556777889998632 222333332222 24677888888876653 2 55666553
No 354
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.69 E-value=0.072 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|.|.|++|.||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999866
No 355
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.69 E-value=0.14 Score=52.82 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
..+|+|.|++|.||||+|++++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999987753
No 356
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.29 Score=50.27 Aligned_cols=124 Identities=20% Similarity=0.282 Sum_probs=62.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhcccc--CCCCCCc---c-----cc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDES--LSVGIPN---V-----GL 288 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~--~~~~~~~---~-----~~ 288 (1187)
.+++|.|..|.|||||.+.++.... ...+.+++.... .. . .......+.+.--.+. +...... . ..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~-~-~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LR-D-LDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hh-h-cCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 4899999999999999999987543 345555553211 00 0 1111111111100000 0000000 0 00
Q ss_pred chhhcccCCceEEEEEcCCCC------hHHHHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEec
Q 001020 289 NFRGKRLSRKKIIIVFDDVTC------SEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEVE 351 (1187)
Q Consensus 289 ~~~~~~l~~kr~LlVLDDv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 351 (1187)
......+..++-+++||+-.. ...+..+...+. .+..||++|.+...... .++++.+.
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~ 168 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVLD 168 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEEc
Confidence 111124556778999997632 223333333332 35778888888766643 55665553
No 357
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.59 E-value=0.32 Score=55.95 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=24.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
-.+++++|+.|+||||++.+++.+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46999999999999999999998765444
No 358
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.58 E-value=0.38 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+++|.|..|.|||||++.++...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998643
No 359
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.57 E-value=0.14 Score=59.00 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=37.6
Q ss_pred CCccchHHHHHHHHHhhccC------------CCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLSTG------------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.++||.+...+.+.-.+... ....+-|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35788888777776544321 11235788999999999999999998775544
No 360
>PRK13949 shikimate kinase; Provisional
Probab=92.56 E-value=0.091 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 361
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.54 E-value=0.24 Score=58.26 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=34.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|.+|+|||||+..++.....+...++-+..+.+.. ..+..+.+.+.
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~ 196 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMK 196 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHH
Confidence 57999999999999999999887665534333344554432 23344444444
No 362
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.48 E-value=0.17 Score=49.97 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=25.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 252 (1187)
++|.|+|..|.|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999987644 4444343
No 363
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.47 E-value=0.079 Score=54.91 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 364
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.47 E-value=0.16 Score=53.63 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=28.2
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
...+|+|+|++|.||||||+.+...+...-...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 456999999999999999999998775443334555
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.44 E-value=0.15 Score=53.44 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
++|.++|+.|+||||.+-+++.+...+-..+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 6899999999999999999888776553334444
No 366
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.44 E-value=3.6 Score=44.31 Aligned_cols=227 Identities=19% Similarity=0.195 Sum_probs=120.4
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc------cCCceEEEEechh---------h-
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN------QFEGSYFLQNVRE---------E- 258 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~---------~- 258 (1187)
+.+.++++...++.++.. .++.+-..++|+.|.||-|.+..+.+++-+ +-+...|...... .
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 457777877777877665 345778899999999999999888876422 2233334321111 0
Q ss_pred ------hcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceE-EEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 259 ------SERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKI-IIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 259 ------~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~-LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
++...--+-+.+.++.++.+..+ .+ .-..+.| ++|+-.++.. +.-..|..........+|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~q--ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQ--IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcc--hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 00001112233334433311110 00 0112233 4555555432 2222233222223456788
Q ss_pred EEEeCCh-hhh-hhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc-hhhHHHhhhh-cC-
Q 001020 330 IITTRDK-QVL-KNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP-LALKVLGCFL-FG- 404 (1187)
Q Consensus 330 IiTTR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~~g~~L-~~- 404 (1187)
|+.--.. .+. ..-...-.+.++..+++|....++..+-++....+ .+++.+|+++++|+- -||-++-..- .+
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 7744331 111 11112236889999999999999988766554422 589999999999873 3433322211 11
Q ss_pred --------CCHHHHHHHHHHhhc-----CCCchHHHHHHHhcCCC
Q 001020 405 --------RKMEDWESAANKLKK-----VPHLDIQKVLKASYDGL 436 (1187)
Q Consensus 405 --------~~~~~w~~~l~~l~~-----~~~~~i~~~l~~sy~~L 436 (1187)
-..-+|+..+.+..+ .....+..+-..=|+-|
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 145689988886543 22334444444445444
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.42 E-value=0.089 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|.|.|++|.||||+|+.+..++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998763
No 368
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.41 E-value=0.25 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 369
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.39 E-value=0.084 Score=56.63 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 370
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.39 E-value=0.21 Score=53.93 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=60.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc-cCChHHHHHHHhhccccCCCCC-----Cccc----
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER-TGGLSQLRQKLFSEDESLSVGI-----PNVG---- 287 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~~l~~l~~~ll~~~~~~~~~~-----~~~~---- 287 (1187)
-.++||+|..|.||||+|+.+..-.. --.+.+++..-. .... ..........++...+ +..+. .+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~-i~~~~~~~~~~~v~elL~~Vg-l~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKD-ITKLSKEERRERVLELLEKVG-LPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcc-hhhcchhHHHHHHHHHHHHhC-CCHHHhhcCCcccCchhh
Confidence 35899999999999999999986443 233444443211 0000 0111122223333321 11110 0111
Q ss_pred -cchhhcccCCceEEEEEcCCCC------hHHHHHHhccCCCCCCCcEEEEEeCChhhhhhc
Q 001020 288 -LNFRGKRLSRKKIIIVFDDVTC------SEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNC 342 (1187)
Q Consensus 288 -~~~~~~~l~~kr~LlVLDDv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 342 (1187)
-....+.+.-++-++|.|.-.. ..|+-.|+..+. ...|-..+..|-|-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 1112235677889999996432 334334443322 12455677777776665543
No 371
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.36 E-value=0.21 Score=56.21 Aligned_cols=59 Identities=25% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCCCccchHHHHHH---HHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEE
Q 001020 193 DNKDLIGVESSIRQ---IESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYF 251 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 251 (1187)
...++||.....+. +.+++..+.-.-|.|.+.|++|.|||+||.++++.+..+.+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 35689998776665 445555444345789999999999999999999999887775543
No 372
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.36 E-value=0.1 Score=52.59 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
+-|.++||.|.||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998876655
No 373
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.68 Score=56.01 Aligned_cols=153 Identities=25% Similarity=0.272 Sum_probs=84.0
Q ss_pred CCCCccchHHHHHHHHHhhc---cC-------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCC---ceEEEEechhhh
Q 001020 193 DNKDLIGVESSIRQIESLLS---TG-------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE---GSYFLQNVREES 259 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~ 259 (1187)
...+.-|.++..+++.+.+. .. ..=.+=|..+|++|.|||.||++++-...-.|- +.-|+. ..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe----mf 223 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----MF 223 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh----hh
Confidence 44567888887777766553 21 122456889999999999999999976543331 111110 00
Q ss_pred cccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC---------------hH-HHHHHhccCCCC
Q 001020 260 ERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC---------------SE-QIKFLIGSLDWF 323 (1187)
Q Consensus 260 ~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~---------------~~-~l~~l~~~~~~~ 323 (1187)
-. .+..+.+.-+ .+ ..+.-+..+++|.++. .+ .+.+++...+.+
T Consensus 224 VG-vGAsRVRdLF-~q------------------Akk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 224 VG-VGASRVRDLF-EQ------------------AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred cC-CCcHHHHHHH-HH------------------hhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 00 1222222111 11 1233456777776532 22 367777777766
Q ss_pred CCCcEE-EE-EeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCC
Q 001020 324 TSGSRI-II-TTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQ 369 (1187)
Q Consensus 324 ~~gsrI-Ii-TTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 369 (1187)
+.+.-| |+ .|-..+|+. .-..++.+.++..+...-.+.+.-|+-..
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC
Confidence 633333 33 232233332 22456778888777777777777666443
No 374
>PHA02244 ATPase-like protein
Probab=92.33 E-value=0.26 Score=56.00 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCccchHHHH----HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 195 KDLIGVESSI----RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 195 ~~~vGr~~~~----~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|....+ ..+..++..+ .-|.|+|++|+|||+||++++......
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3466754444 3444455432 246789999999999999999876433
No 375
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.33 E-value=0.25 Score=57.77 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhc-----cCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 200 VESSIRQIESLLS-----TGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 200 r~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
-...++++..||. ...-+.+++.|.|++|+||||..+.++..+
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3455677777776 334456899999999999999999998754
No 376
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.31 E-value=0.42 Score=46.20 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=10.2
Q ss_pred cCccccccCcccceEEEe
Q 001020 552 LNPQTFIKMHKLRFLKFY 569 (1187)
Q Consensus 552 ~~~~~f~~m~~Lr~L~l~ 569 (1187)
+...+|.++.+|+.+.+.
T Consensus 3 i~~~~F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFP 20 (129)
T ss_dssp E-TTTTTT-TT--EEEET
T ss_pred ECHHHHhCCCCCCEEEEC
Confidence 456778888888877765
No 377
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.30 E-value=0.22 Score=59.37 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566667544344568999999999999999999987764434566764
No 378
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=1.2 Score=54.38 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
+++=|.++-..+|.+-+.. +-.+..=|.++|++|.|||-+|++|+...+-.|
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F 733 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF 733 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE
Confidence 3455677777777765432 212234577999999999999999998765444
No 379
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.27 E-value=0.17 Score=55.75 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..-.++.|.|.+|.||||+|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34568999999999999999998776544445677774
No 380
>PRK05439 pantothenate kinase; Provisional
Probab=92.25 E-value=0.19 Score=56.39 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999886643
No 381
>PRK06217 hypothetical protein; Validated
Probab=92.25 E-value=0.094 Score=54.59 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|.|.|.+|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 382
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.22 E-value=0.087 Score=55.65 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|||.|..|.||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 383
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.21 E-value=0.74 Score=59.66 Aligned_cols=228 Identities=21% Similarity=0.214 Sum_probs=105.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC----CceEEEE--echhhhcccCChHHHHHHHhhccccCCCCCCccccchhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF----EGSYFLQ--NVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRG 292 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~--~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~ 292 (1187)
.-+.|+|-+|.||||+...++-....+. +..+|+. ...........+ .+...+.... ..............
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~--~~~~~~~~~~~~~~ 299 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEEL--FSQGIAKQLIEAHQ 299 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHH--hccCCcchhhHHHH
Confidence 3688999999999999999887543322 2233332 111111110111 2222222221 11111000000002
Q ss_pred cccCCceEEEEEcCCCChHH------HHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEecCCCHHHHHH------
Q 001020 293 KRLSRKKIIIVFDDVTCSEQ------IKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEVEALLDYYALQ------ 360 (1187)
Q Consensus 293 ~~l~~kr~LlVLDDv~~~~~------l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~------ 360 (1187)
..+...++|+.+|.++.... ...+-..+++ -+.+++|+|+|....-........+++..+.++.-.+
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 46788999999999876532 2222212222 3588999999986443332223344555544443322
Q ss_pred --HHHHhhhCCCCCCCchHH-HH---HHHHHHHhccCchhhHHHhhhhc------CCCHHHHHHHHHHhhcCCCchHHHH
Q 001020 361 --LFSRHAFGQNQNADPSYK-EL---SDRIIKFAQGVPLALKVLGCFLF------GRKMEDWESAANKLKKVPHLDIQKV 428 (1187)
Q Consensus 361 --Lf~~~af~~~~~~~~~~~-~l---~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~ 428 (1187)
.+....++........+. .+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-...+..-...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~ 458 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIK 458 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhc
Confidence 121222222111000111 11 11233444778998888774332 2345566666665544333222222
Q ss_pred HHHhcCCC-CHHHHH-HHhhhhcc
Q 001020 429 LKASYDGL-DDEEQN-IFLDIACF 450 (1187)
Q Consensus 429 l~~sy~~L-~~~~k~-~fl~la~f 450 (1187)
....|+.+ ++...+ .+..+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 459 WSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred chhhhcccchHHHHHHHHHHHHHH
Confidence 34455555 333333 44444433
No 384
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.19 E-value=0.26 Score=58.17 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=33.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|.+|+|||||+.+++.....+ -+.++|. .+.+.. ..+..+.+.+.
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER~---rEv~ef~~~~~ 195 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGERS---REGHELYHEMK 195 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcch---HHHHHHHHHHH
Confidence 579999999999999999998876543 3444544 454432 23344444443
No 385
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.17 E-value=0.36 Score=53.43 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=37.3
Q ss_pred HHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 208 ESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 208 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
.++|..+-..-+++.|.|.+|.|||++|.++..+.....+.++|+.
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3344444455679999999999999999999998888888888885
No 386
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.16 E-value=0.39 Score=52.29 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..|.++|..+=..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4455666555455679999999999999999988765444556677774
No 387
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.15 E-value=0.1 Score=52.02 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=18.6
Q ss_pred EEEEEecCcchHHHHHHHHH
Q 001020 220 TLGIWGIGGIGKTTLAGAIF 239 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~ 239 (1187)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 388
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.12 E-value=0.11 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEecCcchHHHHHHHHHHHhh
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
|.|+|++|.||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 389
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.10 E-value=0.18 Score=58.10 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHhhcc---------C---CCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLST---------G---SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.+++|.+..++.+...+.. + ....+.|.++|++|+||||||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 3578888888887766632 0 01135789999999999999999998765443
No 390
>PRK13948 shikimate kinase; Provisional
Probab=92.06 E-value=0.11 Score=53.76 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..+.|.++|+.|.||||+++.+++++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34688999999999999999999887433
No 391
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.06 E-value=0.11 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++++|.|+.|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988653
No 392
>PRK13946 shikimate kinase; Provisional
Probab=92.05 E-value=0.11 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+.|.+.|++|.||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999874
No 393
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.03 E-value=0.12 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+|.|.|.+|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999987643
No 394
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.03 E-value=0.23 Score=53.63 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------CceEEEEe
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------EGSYFLQN 254 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~ 254 (1187)
..|..+|..+-..-.++.|.|.+|.|||+||.+++......- ..++|+..
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 345555654444557999999999999999999987654444 45677753
No 395
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.01 E-value=0.8 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.++++++|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998664
No 396
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.98 E-value=0.1 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
++.|.|++|.||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998763
No 397
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.94 E-value=0.098 Score=51.50 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=22.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.|+|+|+.|+|||||++.++..+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999997654443
No 398
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.83 E-value=0.28 Score=58.32 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=51.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEEechhhhcccCChHHHHHHHhhcccc-CCCCCCc--ccc----ch
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF-EGSYFLQNVREESERTGGLSQLRQKLFSEDES-LSVGIPN--VGL----NF 290 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~-~~~~~~~--~~~----~~ 290 (1187)
..++|+|.+|+|||||++.+++.+.... +..+++..+.+.. ..+..+.+.+-.++-. .....+. ... ..
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999775433 4455555565533 2233444444222100 0000000 000 01
Q ss_pred hhc--ccCCceEEEEEcCCCChHH
Q 001020 291 RGK--RLSRKKIIIVFDDVTCSEQ 312 (1187)
Q Consensus 291 ~~~--~l~~kr~LlVLDDv~~~~~ 312 (1187)
..+ +-.++.+||++|++.....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHHH
Confidence 111 2378999999999865543
No 399
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.81 E-value=0.35 Score=56.74 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=34.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|.+|+|||||+..+......+...++.+..+.+.. ..+..+.+.+.
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~ 195 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMK 195 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHH
Confidence 57999999999999999999887655434444444555432 23344444443
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.77 E-value=0.12 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.6
Q ss_pred EEEEecCcchHHHHHHHHHHHhhc
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 401
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.74 E-value=0.56 Score=50.59 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=33.8
Q ss_pred ccCCceEEEEEcC----CC--ChHHHHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEe
Q 001020 294 RLSRKKIIIVFDD----VT--CSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEV 350 (1187)
Q Consensus 294 ~l~~kr~LlVLDD----v~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 350 (1187)
.|..++=|+|||. || ....+-.++..+. ..|..||++|-|-...... .++++-+
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~-~D~vi~L 212 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY-FDRVICL 212 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh-CCEEEEE
Confidence 6778889999995 33 3333555555544 3388999999996544332 3444443
No 402
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.27 Score=49.64 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=61.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
.+++|.|..|.|||||++.++..+. ...+.+++.... .. . ....+....+.--. .+... ..........+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~-~-~~~~~~~~~i~~~~-qlS~G--~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA-K-LPLEELRRRIGYVP-QLSGG--QRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc-c-CCHHHHHhceEEEe-eCCHH--HHHHHHHHHHHhcC
Confidence 5899999999999999999987543 345566653221 00 0 01111111111000 00000 00011112244556
Q ss_pred eEEEEEcCCCC---hHH---HHHHhccCCCCCCCcEEEEEeCChhhhhhcCcceeEEec
Q 001020 299 KIIIVFDDVTC---SEQ---IKFLIGSLDWFTSGSRIIITTRDKQVLKNCRVDGIYEVE 351 (1187)
Q Consensus 299 r~LlVLDDv~~---~~~---l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 351 (1187)
+-++++|+... ... +..+..... ..+..||++|.+...+... .++++.+.
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 78899998742 222 322222222 2256788888887665543 34555543
No 403
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.71 E-value=0.19 Score=51.23 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
...+++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999987754
No 404
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.68 E-value=0.21 Score=57.45 Aligned_cols=49 Identities=31% Similarity=0.334 Sum_probs=39.0
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE 247 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 247 (1187)
..++|.++.+..+...+..+. -+.+.|.+|+|||+||+.++..+...|-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 348998888888766665443 5789999999999999999998875554
No 405
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.66 E-value=0.13 Score=52.93 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+.|.|+|+.|.||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 406
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.66 E-value=0.77 Score=54.75 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHhhccCC----CCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 198 IGVESSIRQIESLLSTGS----KDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
-++..-+..|.+.|.... ....+|+|+|.+|+||||++..++..+..+
T Consensus 326 ~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 326 RGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred hHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344444555555443211 234799999999999999999998866544
No 407
>PRK13975 thymidylate kinase; Provisional
Probab=91.66 E-value=0.15 Score=53.81 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 408
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.56 E-value=0.31 Score=52.97 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=32.1
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE 247 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 247 (1187)
.++...+....+...+|||.|.||+||+||..++-.++..+=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3444444444456779999999999999999999887755443
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.35 Score=54.88 Aligned_cols=48 Identities=25% Similarity=0.325 Sum_probs=37.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
+.++.+.|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYV 126 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYV 126 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEE
Confidence 4566677754332335899999999999999999999998776 67776
No 410
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.38 Score=53.80 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=49.6
Q ss_pred chhhHHHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhcc---------C-CCCeEEEEEEecCcchHHHHHHHH
Q 001020 169 RPESLLIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLST---------G-SKDVYTLGIWGIGGIGKTTLAGAI 238 (1187)
Q Consensus 169 ~~e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v 238 (1187)
.+++.+++-+-.+|.++-+.. .=+++.|.++..+-|++..-. + ..-=+-|..+|++|.|||-||++|
T Consensus 189 ~~d~~Lve~lerdIl~~np~i---kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv 265 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRNPNI---KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV 265 (491)
T ss_pred cchHHHHHHHHHHHhccCCCc---ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence 456666666666666554332 235678888777777664321 1 112356889999999999999999
Q ss_pred HHHhhccC
Q 001020 239 FNRISNQF 246 (1187)
Q Consensus 239 ~~~~~~~F 246 (1187)
|..-..-|
T Consensus 266 ATEc~tTF 273 (491)
T KOG0738|consen 266 ATECGTTF 273 (491)
T ss_pred HHhhcCeE
Confidence 98765433
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.51 E-value=0.14 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999873
No 412
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.47 E-value=0.26 Score=53.59 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc------CCceEEEE
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ------FEGSYFLQ 253 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 253 (1187)
.|..+|..+-..-.++.|+|.+|.|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 4455555444455799999999999999999997543222 25677774
No 413
>PRK14530 adenylate kinase; Provisional
Probab=91.42 E-value=0.14 Score=54.80 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|.|.|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 414
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.42 E-value=0.16 Score=53.35 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999874
No 415
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.41 E-value=0.31 Score=53.79 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSY 250 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 250 (1187)
++...++. ..++.+|.|.|.+|.|||||+..+...+.......+
T Consensus 93 ~~~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 93 ERNRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred HHHHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 33444553 245789999999999999999999998876654443
No 416
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.41 E-value=0.34 Score=52.45 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..+.++|..+=..-.++.|.|.+|.||||+|.+++.....+-+.++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555444344569999999999999999988765444455677774
No 417
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.40 E-value=0.4 Score=52.43 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=32.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh----ccCCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS----NQFEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|-.|+|||+|+..+.++.. .+-+.++|+ .+.+.. .....+.+.+.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~-~IGeR~---rev~e~~~~~~ 124 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA-AMGITM---EDARFFKDDFE 124 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE-Eecccc---HHHHHHHHHhh
Confidence 4689999999999999999887653 223445554 454432 33444444443
No 418
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.39 E-value=0.49 Score=52.69 Aligned_cols=39 Identities=31% Similarity=0.248 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHH
Q 001020 199 GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIF 239 (1187)
Q Consensus 199 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 239 (1187)
+|..+-.--.++|. .+++..|.+.|.+|.|||-||.+..
T Consensus 228 prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHH
Confidence 34444333334443 2468899999999999999997764
No 419
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.36 E-value=0.61 Score=45.09 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=11.6
Q ss_pred CCCCCcEEECccCCCccccc-cccCCCCCCEEeec
Q 001020 869 QLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLS 902 (1187)
Q Consensus 869 ~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~ 902 (1187)
.+++|+.+.+..+ +..++. .+.+. +|+.+.+.
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 3445555555433 444433 33443 55555443
No 420
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.34 E-value=0.38 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+-|.++|+.|+|||++++....+.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 467899999999999999987654
No 421
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.22 Score=53.23 Aligned_cols=54 Identities=33% Similarity=0.394 Sum_probs=40.7
Q ss_pred CCCccchHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCC
Q 001020 194 NKDLIGVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE 247 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 247 (1187)
..+.=|.++.+++|.+..... -...+-|.++|.+|.|||-||++|+|+.+..|-
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 345667888888888765321 123456779999999999999999998877664
No 422
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.32 E-value=1.2 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+..|+|+||+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987654
No 423
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.28 E-value=4.8 Score=46.46 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHHHHhhccCC-------CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 205 RQIESLLSTGS-------KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 205 ~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
++|.++|..+. ....+|-.+|.-|.||||.|-.+++.++.
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 45666665321 23578999999999999999999987766
No 424
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.18 E-value=4.6 Score=45.74 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=33.6
Q ss_pred eEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhh
Q 001020 347 IYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLAL 395 (1187)
Q Consensus 347 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal 395 (1187)
.++|++++.+|+..++..++-.+-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6899999999999999887654433211233345566666669998644
No 425
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.10 E-value=0.17 Score=52.75 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYF 251 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 251 (1187)
.|++.|+|+.|+|||||++++.......|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 3689999999999999999999988888854443
No 426
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.10 E-value=0.18 Score=53.57 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVRE 257 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 257 (1187)
+....|.++||+|.||||..+.++..+..++.. .|+.+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDP 57 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDP 57 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCH
Confidence 345678899999999999999999887776643 34445544
No 427
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.10 E-value=2.4 Score=50.61 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh-ccCCceEEEEechhhhcccCChHHHHHHHhhc
Q 001020 197 LIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS-NQFEGSYFLQNVREESERTGGLSQLRQKLFSE 275 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 275 (1187)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++.... .+-..++|+. . + ....++..+++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l-E-----m~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L-E-----MSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C-C-----CCHHHHHHHHHHH
Confidence 4555555566666654 323345888999999999999999997664 2223455553 1 1 3445566665544
No 428
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.08 E-value=0.2 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.|.++|++|.||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 429
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.07 E-value=0.22 Score=59.64 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.1
Q ss_pred CCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 214 GSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 214 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+++.+|+|.|..|.||||||+.+...+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44567899999999999999999998764
No 430
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.04 E-value=0.29 Score=51.35 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=26.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCceEEEEech
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVR 256 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 256 (1187)
.|+|+|-||+||||+|..++.++..+=...+.+.+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999997766544432334444443
No 431
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.00 E-value=0.44 Score=54.06 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=25.7
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
....+|+|.|.+|+|||||+..+...+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 456799999999999999999998876643
No 432
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.98 E-value=0.17 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+-|.|.|.+|+||||+|.+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 458899999999999999999643
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.97 E-value=0.91 Score=51.92 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=27.5
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
..++++++|+.|+||||++..++.....+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467999999999999999999987664433334444
No 434
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=90.97 E-value=0.25 Score=52.51 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=22.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++|.|.+|+|||+|+..+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CEEEEEcCcccccchhhHHHHhccc
Confidence 4789999999999999999998764
No 435
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=90.97 E-value=1.6 Score=43.06 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=32.3
Q ss_pred HHHHHhhccccEEEEEecCCcccchhHHHHHHHHHHhccccCCCceEEeEEEEec
Q 001020 64 PALLDAIGGSKISVIIFSEGYASSRWCLEEIVKILECKNDKNIGQIVVPVFYRVD 118 (1187)
Q Consensus 64 ~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~~~~~~~~~~~~v~pvfy~vd 118 (1187)
.++.++|++++..++|++.....+.+. .++.+.+.... .+..++.|+=++|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechh
Confidence 467899999999999999766555542 24555554321 1234566665555
No 436
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.95 E-value=0.14 Score=57.01 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=63.6
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFS 274 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 274 (1187)
+.+.-.....+++.++|...-..-+.|.|.|..|.||||+++++...+...-...+-+.+..|.... . .-..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-----~---~~~~ 175 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-----G---PNQI 175 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-----C---SSEE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-----c---cceE
Confidence 3444444444556666543322346899999999999999999998776551233334333222110 0 0000
Q ss_pred ccccCCCCCCccccchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEE-EEEeCC
Q 001020 275 EDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRI-IITTRD 335 (1187)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrI-IiTTR~ 335 (1187)
.. ................|+..+=.+|++.+.+.+..+.+... ..|..+ +-|...
T Consensus 176 ~~--~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 176 QI--QTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp EE--EEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred EE--EeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 00 00000000011112256667778999999998887774443 357777 444443
No 437
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.95 E-value=0.23 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 438
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.95 E-value=0.34 Score=55.85 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=57.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE-EechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL-QNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
..|.|.|+.|.||||+++++...+......+++. .+..+.... .. ..+..+. ..+...... .......++.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~--~~----~~~i~q~-evg~~~~~~-~~~l~~~lr~ 194 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR--NK----RSLINQR-EVGLDTLSF-ANALRAALRE 194 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc--Cc----cceEEcc-ccCCCCcCH-HHHHHHhhcc
Confidence 5899999999999999999988776555555443 221111000 00 0001000 011111111 1112235677
Q ss_pred ceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 298 KKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 298 kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
.+=.|++|.+.+.+.+....... ..|..|+.|.-..
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 88899999999888766533321 2455555555443
No 439
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.95 E-value=0.17 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|.|+|+.|.||||+|+.++.++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
No 440
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.95 E-value=0.15 Score=53.13 Aligned_cols=25 Identities=40% Similarity=0.393 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..++|.|..|.||||+++++...+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4899999999999999999987664
No 441
>PRK13768 GTPase; Provisional
Probab=90.93 E-value=0.28 Score=53.89 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.++.|.|.||+||||++..+....+.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999999988866554
No 442
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.93 E-value=0.33 Score=54.00 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
....+|||.|..|.||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876554
No 443
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=90.92 E-value=2.4 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
...++|+|++++|||||..++..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~ 143 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAG 143 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998875
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.90 E-value=0.28 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=28.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++.+.|.||+||||+|.+.+-+.......+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999888777666443333
No 445
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.89 E-value=0.43 Score=53.62 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 194 NKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++.++...|
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 334444445556666666432 3588999999999999999999886554
No 446
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.89 E-value=0.2 Score=53.27 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.2
Q ss_pred cCCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 213 TGSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 213 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+....+.|.|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456788999999999999999998754
No 447
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.88 E-value=0.56 Score=50.95 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..+.++|..+-..-.++.|+|.+|.|||++|.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455566545455679999999999999999999765433445566664
No 448
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.87 E-value=0.14 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=19.9
Q ss_pred EEEEecCcchHHHHHHHHHHHh
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
|.|+|++|.||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 449
>PRK15453 phosphoribulokinase; Provisional
Probab=90.82 E-value=0.31 Score=53.31 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
...+|+|.|.+|.||||+|+++.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999997664
No 450
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.82 E-value=0.29 Score=57.47 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
+.+.++|++|+|||++|+.++......|
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4688999999999999999998764433
No 451
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.76 E-value=0.37 Score=54.26 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555665 34355679999999999999999998876655545567774
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.75 E-value=0.15 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
++|+|+|+.|.||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999999754
No 453
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.74 E-value=0.3 Score=51.99 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.++++|+++|..|.|||||..++.++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999999887543
No 454
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=90.70 E-value=0.29 Score=54.17 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=29.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
++|+|+|.+|.|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 455554
No 455
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=90.67 E-value=0.26 Score=49.66 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+++|+|+.|.|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987655
No 456
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.66 E-value=0.36 Score=59.30 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+..+.|.+-.+.|.+........-.+|.|+|++|.||||+|++++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45666777677777766544444558999999999999999999998754
No 457
>PRK04182 cytidylate kinase; Provisional
Probab=90.66 E-value=0.19 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|+|.|+.|.||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998763
No 458
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.59 E-value=0.26 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 459
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=90.44 E-value=0.24 Score=48.92 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.++|+|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998887765
No 460
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.39 E-value=0.3 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.5
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.-..|+++|+.|.||||+|+.++.++.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999998763
No 461
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.38 E-value=0.2 Score=45.47 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999987765
No 462
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.36 E-value=0.15 Score=30.10 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=2.5
Q ss_pred EEeccCC
Q 001020 852 NLNLSDC 858 (1187)
Q Consensus 852 ~L~Ls~~ 858 (1187)
.|+|++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 463
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.34 E-value=0.25 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.++.|.|+.|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999876
No 464
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.33 E-value=0.16 Score=32.34 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=10.7
Q ss_pred cceEeecCccccccchhhh
Q 001020 729 IEELFLDGTAIEELPLSIE 747 (1187)
Q Consensus 729 L~~L~L~~~~i~~lp~~i~ 747 (1187)
|++|+|++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555566666665543
No 465
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=90.27 E-value=0.16 Score=31.18 Aligned_cols=20 Identities=55% Similarity=1.032 Sum_probs=17.8
Q ss_pred ccceEeCcCCCccccccccc
Q 001020 614 NLIALEMPHSSVEKLWGGAQ 633 (1187)
Q Consensus 614 ~L~~L~L~~~~i~~l~~~~~ 633 (1187)
+|++|+|+++++++||++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998753
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.26 E-value=0.2 Score=52.86 Aligned_cols=22 Identities=50% Similarity=0.604 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
-++||+|..|.||||||+.++-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4899999999999999999985
No 467
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.24 E-value=0.3 Score=50.94 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=25.9
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
+.|.|.+|+|||+||.+++.....+=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999998876554445566763
No 468
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.23 E-value=0.8 Score=57.29 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
-++++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987653
No 469
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=90.20 E-value=0.33 Score=54.58 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=44.3
Q ss_pred cCCCCCccchHHHHHHHHHhhccC----CCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTG----SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+.-.+.++|+++.++++.+.+... ...-+++.+.|+.|.||||||+.+-+-+...
T Consensus 57 ~~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 57 PFFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 333458999999999999988642 2456899999999999999999988766543
No 470
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.19 E-value=0.53 Score=55.29 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=28.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEechh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN-QFEGSYFLQNVRE 257 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~ 257 (1187)
+.++|.|.+|+|||+|+..+...... +-+.++|. .+.+
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~-~iGe 177 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC-GIGE 177 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE-Eecc
Confidence 57999999999999999998876542 23455554 4544
No 471
>PLN02200 adenylate kinase family protein
Probab=90.19 E-value=0.24 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...+|.|.|++|.||||+|+.++.+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998765
No 472
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.16 E-value=0.23 Score=50.57 Aligned_cols=21 Identities=43% Similarity=0.395 Sum_probs=17.8
Q ss_pred EEEEecCcchHHHHHHHHHHH
Q 001020 221 LGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~ 241 (1187)
|+|.|..|.|||||++.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 473
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=90.12 E-value=0.41 Score=59.38 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=43.7
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEec
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFLQNV 255 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~ 255 (1187)
+.++|.+..++.+...+..+ +.+.++|++|+||||+|+++++.+... |...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 46789998888888877643 256699999999999999999977554 4555566555
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.10 E-value=0.2 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|+|+|+.|.||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999864
No 475
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.10 E-value=0.0028 Score=75.47 Aligned_cols=131 Identities=23% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCCEEeccCCCCCc----cCCcccCCcccccEEEcccCccc-----ccchhhh----cCCCCCEEEccccCCCCcCCccC
Q 001020 775 SLQHLNLFGCTKVE----RLPDEFGNLEALMEMKAVRSSIR-----ELPSSIV----QLNNLYRLSFERYQGKSHMGLRL 841 (1187)
Q Consensus 775 ~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~-----~lp~~l~----~l~~L~~L~l~~~~~~~~~~~~l 841 (1187)
.|++|.+..|.... .+...+...+.|+.++++.|.+. .++..+. ...++++|.+.+|.........+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34445554444321 22333444555566666655553 1122222 34566666666665443211111
Q ss_pred C-CCCCCCC-ccEEeccCCCCCC-----cccccCCC-CCCcEEECccCCCc-----cccccccCCCCCCEEeecCCC
Q 001020 842 P-TMSGLRI-LTNLNLSDCGITE-----LPNSLGQL-SSLHILFRDRNNFE-----RIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 842 ~-~l~~l~~-L~~L~Ls~~~l~~-----l~~~l~~l-~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
. .+...++ +..|++..|.+.+ +...+..+ ..++.|+++.|.|+ .+...+..++.++.|.+++++
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 1 1333344 5567777777664 33444445 67777777777776 344456666777777777654
No 476
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.05 E-value=0.69 Score=52.05 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=48.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC--CceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF--EGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
+.+.|.|..|.||||+++++.+.+.... +..+-+.+..|........ ..+ ................|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~--------v~~--~~~~~~~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV--------VQL--RTSDDAISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE--------EEE--EecCCCCCHHHHHHHHhc
Confidence 4677999999999999999998875532 2233343333321100000 000 000000000111223566
Q ss_pred CceEEEEEcCCCChHHHHHHhc
Q 001020 297 RKKIIIVFDDVTCSEQIKFLIG 318 (1187)
Q Consensus 297 ~kr~LlVLDDv~~~~~l~~l~~ 318 (1187)
..+=.||+..+.+.+.++.+..
T Consensus 203 ~~pD~iivGEiR~~ea~~~l~a 224 (299)
T TIGR02782 203 LRPDRIIVGEVRGGEALDLLKA 224 (299)
T ss_pred CCCCEEEEeccCCHHHHHHHHH
Confidence 6777788899988887665443
No 477
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.02 E-value=0.49 Score=53.36 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 205 RQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..|..+|. .+-..-+++-|+|++|.||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555665 34345678999999999999999998876655555677774
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.01 E-value=0.19 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+++|+|+.|.|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997654
No 479
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=90.00 E-value=1.6 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+++.|.|.+|.||||+++.+...+..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~ 394 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEA 394 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999876554
No 480
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=89.97 E-value=0.89 Score=46.20 Aligned_cols=48 Identities=13% Similarity=0.358 Sum_probs=32.0
Q ss_pred ccCCceEEEEEcC----CCChHHHHH--HhccCCCCCCCcEEEEEeCChhhhhhcC
Q 001020 294 RLSRKKIIIVFDD----VTCSEQIKF--LIGSLDWFTSGSRIIITTRDKQVLKNCR 343 (1187)
Q Consensus 294 ~l~~kr~LlVLDD----v~~~~~l~~--l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 343 (1187)
..-+++-+++-|. ++-.-.|+- +...+. ..|..||++|-+.++...+.
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 4557788888884 444444443 233332 57999999999998877653
No 481
>PRK06761 hypothetical protein; Provisional
Probab=89.89 E-value=0.31 Score=53.83 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
++|.|.|++|.||||+|+.+++++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987543
No 482
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=5.2 Score=46.59 Aligned_cols=30 Identities=40% Similarity=0.462 Sum_probs=24.5
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
-++-+...|++|.|||.||++|+-+....|
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 355667999999999999999998765544
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.87 E-value=0.51 Score=56.34 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 203 SIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 203 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
-+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345666777554444568999999999999999999887655434566763
No 484
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=89.80 E-value=0.49 Score=45.07 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHHHHhhcc-CCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 203 SIRQIESLLST-GSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 203 ~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
-++.|...+.. .+++.-|+...|.+|+|||.+|+.+++.
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34445555543 3456779999999999999999999886
No 485
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=89.79 E-value=0.42 Score=48.26 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
++++|+|..|.|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987654
No 486
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=89.77 E-value=0.64 Score=50.20 Aligned_cols=37 Identities=35% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 202 SSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 202 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...+.+...+... .+..|+|++|.||||++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 3445566666432 278899999999998877777665
No 487
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=1.2 Score=53.69 Aligned_cols=166 Identities=23% Similarity=0.257 Sum_probs=83.2
Q ss_pred CccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc-C
Q 001020 196 DLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT-G 263 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~ 263 (1187)
.+-|....+..+..+... +-...+-+..+|++|.|||-+|++|+++.. +.+|..+..+..... .
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~peli~k~~g 260 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPELISKFPG 260 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHHHHhccc
Confidence 445556666655554321 123457788999999999999999998775 334443433221110 1
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCc-eEEEEEcCCCCh------------HHHHHHhccCCCCCCCcEE-
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK-KIIIVFDDVTCS------------EQIKFLIGSLDWFTSGSRI- 329 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k-r~LlVLDDv~~~------------~~l~~l~~~~~~~~~gsrI- 329 (1187)
.-+.-.+..+.+ ..+.+ +..+.+|+++.. .....+....++.++.+++
T Consensus 261 Ete~~LR~~f~~------------------a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 261 ETESNLRKAFAE------------------ALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred chHHHHHHHHHH------------------HhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 111111111111 12233 566666665321 1233344444444544444
Q ss_pred -EEEeCChhhhh-h---cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHH
Q 001020 330 -IITTRDKQVLK-N---CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDR 383 (1187)
Q Consensus 330 -IiTTR~~~v~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~ 383 (1187)
|-|||...-+. . -..+...++.-.+..+-.+++..+.-........++.+++..
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~ 381 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVS 381 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 33555542221 1 133456777777777777777766544333323444444443
No 488
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.70 E-value=0.33 Score=52.46 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=27.3
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..-.++.|.|.+|.||||+|.+++.....+=..++|+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33459999999999999998777665533334556664
No 489
>PLN02348 phosphoribulokinase
Probab=89.70 E-value=0.31 Score=55.95 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=25.6
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45689999999999999999999987753
No 490
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.68 E-value=1 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.-+|.|.|.+|+||||+|..++.++
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999877
No 491
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.68 E-value=0.44 Score=45.27 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=22.2
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcc
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
|.+.|.||+||||++..++..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999877654
No 492
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.68 E-value=2 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=22.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.+|-|++-.|-||||.|..++-+...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~ 32 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH 32 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC
Confidence 578888889999999999988765444
No 493
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.67 E-value=0.26 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|+|.|+.|.||||+|+.+.+++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 494
>PRK14527 adenylate kinase; Provisional
Probab=89.66 E-value=0.26 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|.|.|++|.||||+|+.++.++
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 495
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=89.61 E-value=5 Score=44.59 Aligned_cols=131 Identities=8% Similarity=-0.032 Sum_probs=69.4
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc-------------cCCceEEEEechhhhcccCChHHHHHH
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN-------------QFEGSYFLQNVREESERTGGLSQLRQK 271 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------~F~~~~~~~~~~~~~~~~~~l~~l~~~ 271 (1187)
+++...+..+. -.....++|+.|+||+++|.+++..+-. ..+...++...... ..-.+.+++ .
T Consensus 7 ~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~--~~I~idqiR-~ 82 (290)
T PRK05917 7 EALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG--RLHSIETPR-A 82 (290)
T ss_pred HHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--CcCcHHHHH-H
Confidence 44555554332 2346779999999999999999986532 12233333111100 001222222 1
Q ss_pred HhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCC-hhhhhhc-Cccee
Q 001020 272 LFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRD-KQVLKNC-RVDGI 347 (1187)
Q Consensus 272 ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~ 347 (1187)
+...+. ..-..++.=++|+|+++.. +....|+..+....+++.+|++|.+ ..+++.. .....
T Consensus 83 l~~~~~--------------~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 83 IKKQIW--------------IHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLS 148 (290)
T ss_pred HHHHHh--------------hCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceE
Confidence 111110 0012345557788888754 4466777666655677777776666 4444332 23345
Q ss_pred EEecCC
Q 001020 348 YEVEAL 353 (1187)
Q Consensus 348 ~~l~~L 353 (1187)
+.+.++
T Consensus 149 ~~~~~~ 154 (290)
T PRK05917 149 IHIPME 154 (290)
T ss_pred EEccch
Confidence 666654
No 496
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=89.60 E-value=0.26 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=19.2
Q ss_pred EEEEecCcchHHHHHHHHHHH
Q 001020 221 LGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~ 241 (1187)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999874
No 497
>PRK04328 hypothetical protein; Provisional
Probab=89.57 E-value=0.54 Score=51.54 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
.|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455556544344568999999999999999998765444456677774
No 498
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=89.54 E-value=0.52 Score=52.48 Aligned_cols=42 Identities=29% Similarity=0.530 Sum_probs=34.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESE 260 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 260 (1187)
.-||+.|-+|+|||.|.+++.+.+..+..+...+.-+.+...
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR 189 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR 189 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccccc
Confidence 469999999999999999999998877776655556766544
No 499
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=89.54 E-value=0.35 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
|.|+|+|-||+||||+|..++..+..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 478999999999999999998866543
No 500
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=89.52 E-value=0.45 Score=48.59 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=32.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEec
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNV 255 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 255 (1187)
+..|+|-|++|.|||||..+....++++|...+--.++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 57999999999999999999999999998876654443
Done!