Query 001020
Match_columns 1187
No_of_seqs 922 out of 6390
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-49 3.9E-54 402.7 11.8 182 2-188 20-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.5E-48 5.2E-53 389.4 12.0 170 16-191 5-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-39 3.9E-44 399.2 19.0 297 198-508 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 7.5E-34 2.6E-38 385.3 19.0 304 190-507 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 6.6E-34 2.3E-38 349.1 13.6 277 195-500 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-32 5.4E-37 341.3 17.6 340 189-545 118-508 (591)
7 3rgz_A Protein brassinosteroid 100.0 1.4E-31 4.8E-36 342.4 24.8 373 552-932 238-721 (768)
8 4eco_A Uncharacterized protein 100.0 2E-31 6.7E-36 333.2 23.8 347 601-956 193-600 (636)
9 3t6q_A CD180 antigen; protein- 100.0 5.5E-30 1.9E-34 320.0 34.3 400 541-953 37-510 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-30 1.3E-34 321.5 32.2 241 704-956 305-558 (606)
11 3rgz_A Protein brassinosteroid 100.0 1.4E-30 4.9E-35 333.1 25.9 333 542-884 205-551 (768)
12 4ecn_A Leucine-rich repeat pro 100.0 1.5E-30 5E-35 330.3 24.9 346 601-956 435-840 (876)
13 3t6q_A CD180 antigen; protein- 100.0 5.6E-29 1.9E-33 310.8 32.7 398 543-955 87-559 (606)
14 2z63_A TOLL-like receptor 4, v 100.0 2.7E-29 9.3E-34 311.3 27.6 400 541-954 32-529 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-29 1.3E-33 308.4 26.9 394 541-956 30-510 (549)
16 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-28 3.6E-33 308.3 31.0 348 541-904 36-458 (606)
17 4eco_A Uncharacterized protein 100.0 1.2E-29 4.1E-34 317.1 22.0 326 591-926 206-598 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 1.3E-28 4.6E-33 312.4 29.6 341 554-926 441-838 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-28 4.6E-33 301.3 24.8 369 541-926 25-479 (520)
20 3j0a_A TOLL-like receptor 5; m 100.0 5E-28 1.7E-32 312.8 30.4 290 541-835 28-376 (844)
21 2z63_A TOLL-like receptor 4, v 100.0 4.5E-28 1.6E-32 300.3 27.0 371 541-926 56-529 (570)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-27 3.6E-32 295.6 29.5 375 561-953 26-483 (549)
23 1ziw_A TOLL-like receptor 3; i 100.0 6.7E-27 2.3E-31 296.1 37.2 357 541-904 29-440 (680)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-27 6.6E-32 291.1 29.9 389 541-956 4-481 (520)
25 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-27 2.3E-31 296.2 35.4 270 679-955 325-621 (680)
26 1o6v_A Internalin A; bacterial 100.0 5.9E-27 2E-31 282.2 32.4 339 559-925 44-385 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.6E-28 2.6E-32 297.3 25.0 369 541-926 56-508 (562)
28 3h16_A TIR protein; bacteria T 100.0 4.4E-30 1.5E-34 257.2 2.9 118 16-136 17-135 (154)
29 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-26 3.8E-31 300.2 35.3 353 559-925 22-461 (844)
30 3v47_A TOLL-like receptor 5B a 100.0 2.9E-27 1E-31 284.4 25.8 331 591-925 30-405 (455)
31 4fmz_A Internalin; leucine ric 100.0 9.1E-27 3.1E-31 269.4 28.6 298 592-905 45-344 (347)
32 1o6v_A Internalin A; bacterial 100.0 1.4E-26 4.6E-31 279.1 30.2 313 592-925 47-363 (466)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-26 1.9E-30 280.6 32.1 373 560-956 30-510 (562)
34 3v47_A TOLL-like receptor 5B a 99.9 1.9E-26 6.6E-31 277.2 27.1 352 594-954 13-406 (455)
35 2id5_A Lingo-1, leucine rich r 99.9 3.5E-26 1.2E-30 276.7 29.4 307 594-905 14-331 (477)
36 4fmz_A Internalin; leucine ric 99.9 6.5E-26 2.2E-30 262.3 28.2 305 604-926 35-344 (347)
37 1jl5_A Outer protein YOPM; leu 99.9 9.3E-26 3.2E-30 269.5 28.7 307 563-918 73-380 (454)
38 3o6n_A APL1; leucine-rich repe 99.9 1.5E-25 5.1E-30 263.6 27.0 298 591-904 45-349 (390)
39 3oja_B Anopheles plasmodium-re 99.9 2.8E-25 9.7E-30 275.9 26.7 299 591-905 51-356 (597)
40 3o6n_A APL1; leucine-rich repe 99.9 8.1E-25 2.8E-29 257.3 27.7 302 607-924 39-348 (390)
41 3bz5_A Internalin-J, INLJ; leu 99.9 7.3E-24 2.5E-28 253.3 32.3 310 555-911 36-355 (457)
42 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-24 1E-28 269.6 30.4 376 541-925 56-577 (635)
43 3oja_B Anopheles plasmodium-re 99.9 2.6E-24 9.1E-29 267.2 27.9 302 608-925 46-355 (597)
44 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-24 1.2E-28 256.0 27.0 298 542-887 47-355 (457)
45 2id5_A Lingo-1, leucine rich r 99.9 1.9E-24 6.5E-29 261.4 24.8 292 590-885 31-334 (477)
46 1jl5_A Outer protein YOPM; leu 99.9 1.7E-24 5.8E-29 258.6 21.6 321 591-954 11-348 (454)
47 1xku_A Decorin; proteoglycan, 99.9 6.1E-23 2.1E-27 235.4 26.8 284 592-905 32-330 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-23 1.2E-27 237.6 24.4 280 592-905 34-331 (332)
49 2ft3_A Biglycan; proteoglycan, 99.9 9.2E-23 3.2E-27 234.1 25.1 282 613-926 33-331 (332)
50 1xku_A Decorin; proteoglycan, 99.9 3.6E-22 1.2E-26 229.0 28.9 283 612-925 30-329 (330)
51 3g06_A SSPH2 (leucine-rich rep 99.9 5E-22 1.7E-26 244.3 27.8 255 592-905 41-295 (622)
52 1ogq_A PGIP-2, polygalacturona 99.9 2E-23 6.8E-28 237.2 13.4 247 637-910 51-307 (313)
53 4g8a_A TOLL-like receptor 4; l 99.9 7.8E-22 2.7E-26 247.5 27.6 356 541-905 80-578 (635)
54 3ub2_A TOLL/interleukin-1 rece 99.9 2.9E-24 1E-28 211.1 2.0 132 16-154 7-145 (146)
55 2z80_A TOLL-like receptor 2, v 99.9 3.4E-22 1.2E-26 231.5 18.8 264 596-905 36-312 (353)
56 1z7x_W Ribonuclease inhibitor; 99.9 2.6E-24 8.8E-29 259.1 -0.4 315 591-905 28-409 (461)
57 4fcg_A Uncharacterized protein 99.9 5.8E-22 2E-26 226.5 19.0 217 592-831 82-311 (328)
58 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 224.3 19.4 232 612-884 80-314 (328)
59 1ogq_A PGIP-2, polygalacturona 99.9 6.8E-22 2.3E-26 224.6 15.7 247 659-930 50-306 (313)
60 3g06_A SSPH2 (leucine-rich rep 99.9 3E-20 1E-24 228.5 28.7 239 613-912 40-278 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-22 7.4E-27 229.3 7.7 258 615-907 12-275 (317)
62 2z80_A TOLL-like receptor 2, v 99.9 2E-21 6.8E-26 225.0 15.3 253 590-885 51-315 (353)
63 3zyj_A Leucine-rich repeat-con 99.8 5.4E-20 1.9E-24 219.6 25.5 239 615-905 45-290 (440)
64 1z7x_W Ribonuclease inhibitor; 99.8 9.1E-23 3.1E-27 245.6 1.4 336 590-926 2-409 (461)
65 3zyi_A Leucine-rich repeat-con 99.8 5.6E-20 1.9E-24 220.3 24.6 239 615-905 56-301 (452)
66 3zyi_A Leucine-rich repeat-con 99.8 7.6E-20 2.6E-24 219.2 24.1 236 592-831 55-300 (452)
67 3zyj_A Leucine-rich repeat-con 99.8 8.1E-20 2.8E-24 218.1 23.4 236 592-831 44-289 (440)
68 2z66_A Variable lymphocyte rec 99.8 5.7E-20 1.9E-24 208.2 20.2 237 595-904 11-258 (306)
69 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-20 8.5E-25 208.9 16.1 199 594-814 14-217 (285)
70 3oja_A Leucine-rich immune mol 99.8 2.4E-20 8.1E-25 224.9 13.1 231 637-902 35-270 (487)
71 1wwl_A Monocyte differentiatio 99.8 6.3E-21 2.2E-25 216.6 7.6 243 633-905 40-307 (312)
72 3o53_A Protein LRIM1, AGAP0063 99.8 4.3E-21 1.5E-25 218.5 5.4 263 636-932 10-279 (317)
73 2z66_A Variable lymphocyte rec 99.8 1.9E-19 6.4E-24 204.0 18.6 200 590-811 27-236 (306)
74 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-19 6.5E-24 201.7 18.2 223 615-884 13-238 (285)
75 3ogk_B Coronatine-insensitive 99.8 1.4E-20 4.9E-25 234.0 3.1 365 557-930 108-527 (592)
76 2js7_A Myeloid differentiation 99.8 1.8E-20 6.2E-25 187.4 3.0 101 16-119 13-117 (160)
77 3ogk_B Coronatine-insensitive 99.8 1.2E-20 4E-25 234.8 1.0 172 634-806 162-350 (592)
78 1fyx_A TOLL-like receptor 2; b 99.8 1.2E-20 4.1E-25 186.9 0.5 101 16-120 2-108 (149)
79 3oja_A Leucine-rich immune mol 99.8 5.1E-19 1.8E-23 213.3 14.9 217 657-907 32-250 (487)
80 1wwl_A Monocyte differentiatio 99.8 7.3E-20 2.5E-24 207.8 6.6 239 592-885 44-310 (312)
81 2j67_A TOLL like receptor 10; 99.8 4.4E-20 1.5E-24 187.4 3.4 101 16-119 32-136 (178)
82 1t3g_A X-linked interleukin-1 99.8 7.9E-20 2.7E-24 182.5 4.6 102 18-120 1-115 (159)
83 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6.1E-22 180.3 16.6 208 716-928 20-239 (239)
84 1p9a_G Platelet glycoprotein I 99.7 6.3E-17 2.2E-21 181.2 21.3 59 847-905 147-206 (290)
85 4ay9_X Follicle-stimulating ho 99.7 2.6E-17 8.8E-22 190.0 18.4 211 594-832 12-234 (350)
86 2z62_A TOLL-like receptor 4, v 99.7 9.2E-17 3.1E-21 178.8 21.4 136 746-905 96-235 (276)
87 2p1m_B Transport inhibitor res 99.7 1.6E-19 5.6E-24 224.6 -1.5 101 591-693 130-245 (594)
88 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.6E-21 178.4 20.0 196 596-814 12-216 (276)
89 2p1m_B Transport inhibitor res 99.7 3.1E-19 1.1E-23 222.0 -1.4 399 555-964 60-526 (594)
90 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.4E-21 174.7 21.9 176 727-905 37-216 (270)
91 1p9a_G Platelet glycoprotein I 99.7 2.6E-16 9E-21 176.1 21.6 189 730-926 13-206 (290)
92 2ast_B S-phase kinase-associat 99.7 4.1E-18 1.4E-22 195.6 5.4 100 615-716 49-152 (336)
93 2o6q_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 172.7 20.9 102 592-694 17-120 (270)
94 4glp_A Monocyte differentiatio 99.7 6E-17 2.1E-21 183.6 14.0 203 683-905 91-305 (310)
95 2ca6_A RAN GTPase-activating p 99.7 2.2E-18 7.6E-23 202.0 1.6 248 615-905 11-314 (386)
96 1h6u_A Internalin H; cell adhe 99.7 3E-16 1E-20 177.4 18.1 66 794-865 169-234 (308)
97 1h6u_A Internalin H; cell adhe 99.7 4.3E-16 1.5E-20 176.1 18.5 192 592-814 42-233 (308)
98 3rfs_A Internalin B, repeat mo 99.7 2.1E-16 7.3E-21 175.4 15.5 117 746-894 129-246 (272)
99 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.8E-22 191.2 5.9 104 613-716 70-178 (336)
100 4ay9_X Follicle-stimulating ho 99.7 6.3E-16 2.2E-20 178.3 18.8 235 616-923 12-254 (350)
101 2xwt_C Thyrotropin receptor; s 99.7 4.8E-16 1.6E-20 169.0 16.2 205 603-831 23-236 (239)
102 3rfs_A Internalin B, repeat mo 99.7 6.5E-16 2.2E-20 171.5 17.2 200 591-820 41-245 (272)
103 2ca6_A RAN GTPase-activating p 99.7 1.9E-17 6.6E-22 194.0 3.2 253 593-862 11-317 (386)
104 4glp_A Monocyte differentiatio 99.7 6.5E-16 2.2E-20 175.0 15.4 176 635-813 90-287 (310)
105 3m19_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 163.3 19.4 172 729-905 16-190 (251)
106 3goz_A Leucine-rich repeat-con 99.6 3.8E-17 1.3E-21 189.5 0.6 57 849-905 226-295 (362)
107 3cvr_A Invasion plasmid antige 99.6 9.6E-15 3.3E-19 177.3 17.6 175 684-905 60-241 (571)
108 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.3E-19 162.6 17.0 167 726-905 45-211 (291)
109 3m19_A Variable lymphocyte rec 99.6 3.4E-14 1.1E-18 155.6 19.7 175 707-885 15-193 (251)
110 3goz_A Leucine-rich repeat-con 99.6 3.2E-16 1.1E-20 181.7 3.6 252 617-884 2-297 (362)
111 3cvr_A Invasion plasmid antige 99.6 7.3E-15 2.5E-19 178.4 15.0 51 592-647 81-131 (571)
112 1m9s_A Internalin B; cell inva 99.6 9.4E-15 3.2E-19 179.5 14.8 166 727-905 43-208 (605)
113 1h6t_A Internalin B; cell adhe 99.6 3.6E-14 1.2E-18 158.9 16.5 171 611-812 44-214 (291)
114 2qen_A Walker-type ATPase; unk 99.5 4.2E-14 1.4E-18 163.0 17.5 289 190-501 7-349 (350)
115 1dce_A Protein (RAB geranylger 99.5 3.2E-16 1.1E-20 191.4 -2.3 201 656-901 346-567 (567)
116 4ezg_A Putative uncharacterize 99.5 3.1E-14 1.1E-18 149.5 13.0 148 726-904 43-191 (197)
117 1xeu_A Internalin C; cellular 99.5 2E-14 6.8E-19 158.3 11.1 164 728-905 20-183 (263)
118 2fna_A Conserved hypothetical 99.5 9.4E-14 3.2E-18 160.6 16.8 288 190-500 8-356 (357)
119 1m9s_A Internalin B; cell inva 99.5 6.9E-14 2.3E-18 171.8 16.1 172 611-813 41-212 (605)
120 1dce_A Protein (RAB geranylger 99.5 1.4E-16 4.9E-21 194.5 -10.4 196 611-833 347-545 (567)
121 3e6j_A Variable lymphocyte rec 99.5 2.6E-13 9E-18 146.1 15.9 149 728-905 20-170 (229)
122 2v9t_B SLIT homolog 2 protein 99.5 3.6E-13 1.2E-17 144.0 15.9 148 730-905 14-163 (220)
123 2o6s_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 143.1 14.7 171 730-911 10-182 (208)
124 4ezg_A Putative uncharacterize 99.5 3E-13 1E-17 142.0 13.5 108 592-700 45-153 (197)
125 2o6s_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 142.6 14.2 161 726-895 27-190 (208)
126 2xot_A Amphoterin-induced prot 99.5 2.8E-13 9.5E-18 156.8 13.9 170 731-905 22-200 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.9E-17 140.1 15.7 148 730-905 14-164 (220)
128 1xeu_A Internalin C; cellular 99.4 5.1E-13 1.7E-17 147.1 12.3 172 704-889 17-190 (263)
129 1w5s_A Origin recognition comp 99.4 2E-12 7E-17 152.6 17.7 279 193-486 20-371 (412)
130 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4.1E-17 151.5 13.4 158 727-884 39-202 (361)
131 2v70_A SLIT-2, SLIT homolog 2 99.4 3.7E-12 1.3E-16 136.1 15.9 148 710-884 15-166 (220)
132 2v9t_B SLIT homolog 2 protein 99.4 4.7E-12 1.6E-16 135.3 16.0 148 710-884 15-165 (220)
133 2qby_B CDC6 homolog 3, cell di 99.4 9E-12 3.1E-16 145.5 18.8 274 194-486 19-339 (384)
134 2ell_A Acidic leucine-rich nuc 99.3 2.5E-12 8.4E-17 131.2 10.2 133 751-887 25-163 (168)
135 3e6j_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 132.4 16.8 148 709-884 22-172 (229)
136 2qby_A CDC6 homolog 1, cell di 99.3 4.1E-11 1.4E-15 139.8 20.1 281 193-486 18-348 (386)
137 2ell_A Acidic leucine-rich nuc 99.3 8.4E-12 2.9E-16 127.2 10.6 135 771-911 21-163 (168)
138 2v1u_A Cell division control p 99.2 7.1E-11 2.4E-15 137.9 17.4 278 193-486 17-351 (387)
139 4b8c_D Glucose-repressible alc 99.2 1.9E-12 6.6E-17 163.1 4.0 114 766-884 216-329 (727)
140 2je0_A Acidic leucine-rich nuc 99.2 9.1E-12 3.1E-16 124.1 7.5 125 749-902 16-148 (149)
141 4b8c_D Glucose-repressible alc 99.2 2.8E-12 9.7E-17 161.6 3.6 156 737-904 211-369 (727)
142 1a9n_A U2A', U2A'; complex (nu 99.2 3.6E-11 1.2E-15 123.6 8.2 60 845-904 85-150 (176)
143 1njg_A DNA polymerase III subu 99.2 2.2E-10 7.5E-15 124.2 14.5 186 193-402 21-231 (250)
144 1w8a_A SLIT protein; signaling 99.2 1.5E-10 5.3E-15 120.6 12.6 123 594-717 11-137 (192)
145 3sb4_A Hypothetical leucine ri 99.1 2.3E-10 8E-15 130.3 14.6 99 797-900 225-327 (329)
146 2wfh_A SLIT homolog 2 protein 99.1 2.4E-10 8.2E-15 119.2 13.1 122 594-717 13-137 (193)
147 2je0_A Acidic leucine-rich nuc 99.1 3.7E-11 1.3E-15 119.7 6.5 104 727-832 17-124 (149)
148 3sb4_A Hypothetical leucine ri 99.1 2.5E-10 8.6E-15 130.1 14.0 211 612-827 100-327 (329)
149 2wfh_A SLIT homolog 2 protein 99.1 3.8E-10 1.3E-14 117.7 13.9 105 727-831 31-136 (193)
150 1a9n_A U2A', U2A'; complex (nu 99.1 1.6E-10 5.4E-15 118.7 10.4 124 591-717 19-151 (176)
151 2o6r_A Variable lymphocyte rec 99.1 8.8E-10 3E-14 113.2 14.3 59 847-905 75-135 (177)
152 1w8a_A SLIT protein; signaling 99.1 5.6E-10 1.9E-14 116.3 12.7 86 728-813 30-117 (192)
153 2chg_A Replication factor C sm 99.0 1.3E-09 4.3E-14 116.3 14.0 187 192-400 14-205 (226)
154 1ds9_A Outer arm dynein; leuci 99.0 1.7E-12 5.7E-17 136.4 -8.5 111 769-886 43-155 (198)
155 1fnn_A CDC6P, cell division co 99.0 5.1E-09 1.7E-13 122.2 18.7 281 193-486 15-351 (389)
156 4fdw_A Leucine rich hypothetic 99.0 2.9E-08 9.8E-13 115.7 24.0 129 769-904 221-355 (401)
157 2o6r_A Variable lymphocyte rec 98.9 5.5E-09 1.9E-13 107.2 13.8 128 730-862 10-138 (177)
158 4fdw_A Leucine rich hypothetic 98.9 4.2E-08 1.4E-12 114.3 22.9 57 844-902 319-378 (401)
159 1ds9_A Outer arm dynein; leuci 98.9 2.5E-11 8.6E-16 127.4 -6.0 134 738-877 36-180 (198)
160 1sxj_B Activator 1 37 kDa subu 98.9 7.1E-09 2.4E-13 117.6 13.8 184 193-399 19-210 (323)
161 4fs7_A Uncharacterized protein 98.9 7.7E-08 2.6E-12 112.3 23.0 164 748-931 228-393 (394)
162 1iqp_A RFCS; clamp loader, ext 98.8 3.6E-08 1.2E-12 112.0 15.1 188 191-401 21-214 (327)
163 2r9u_A Variable lymphocyte rec 98.8 2.2E-08 7.5E-13 102.3 11.6 99 802-905 16-116 (174)
164 3g39_A Variable lymphocyte rec 98.8 2.3E-08 7.7E-13 101.8 10.8 100 593-694 11-113 (170)
165 3g39_A Variable lymphocyte rec 98.8 2.5E-08 8.6E-13 101.4 11.0 100 729-830 11-111 (170)
166 2r9u_A Variable lymphocyte rec 98.8 2.5E-08 8.7E-13 101.8 11.0 96 730-828 15-112 (174)
167 4fs7_A Uncharacterized protein 98.7 5.7E-07 1.9E-11 105.0 21.8 290 611-956 92-390 (394)
168 1hqc_A RUVB; extended AAA-ATPa 98.7 3.6E-07 1.2E-11 103.6 19.3 258 192-495 9-307 (324)
169 3un9_A NLR family member X1; l 98.6 2.3E-09 8E-14 123.7 -3.1 59 846-904 181-249 (372)
170 3un9_A NLR family member X1; l 98.6 4.1E-09 1.4E-13 121.7 -1.9 137 750-886 101-254 (372)
171 1jr3_A DNA polymerase III subu 98.6 6.5E-07 2.2E-11 103.6 16.4 183 193-399 14-221 (373)
172 2chq_A Replication factor C sm 98.6 6.4E-07 2.2E-11 101.1 15.8 183 193-398 15-203 (319)
173 2ra8_A Uncharacterized protein 98.5 8.5E-08 2.9E-12 109.7 7.9 162 741-905 130-318 (362)
174 1sxj_A Activator 1 95 kDa subu 98.5 2.9E-06 1E-10 102.2 19.7 189 192-398 36-252 (516)
175 2ifg_A High affinity nerve gro 98.4 4.4E-07 1.5E-11 103.9 10.7 101 731-832 12-114 (347)
176 2ifg_A High affinity nerve gro 98.4 6.8E-07 2.3E-11 102.3 10.7 94 787-884 21-116 (347)
177 3bos_A Putative DNA replicatio 98.4 5.3E-07 1.8E-11 97.2 8.6 174 193-399 26-217 (242)
178 4gt6_A Cell surface protein; l 98.4 2.7E-05 9.3E-10 90.6 23.2 130 550-691 52-190 (394)
179 3h4m_A Proteasome-activating n 98.3 1.9E-06 6.6E-11 95.5 12.5 172 193-390 15-221 (285)
180 1sxj_D Activator 1 41 kDa subu 98.3 7.2E-06 2.5E-10 93.9 17.7 196 191-398 33-234 (353)
181 1jbk_A CLPB protein; beta barr 98.3 1.5E-06 5.2E-11 89.7 10.4 50 193-244 20-69 (195)
182 3d8b_A Fidgetin-like protein 1 98.3 5.7E-06 1.9E-10 94.8 16.0 202 171-400 63-296 (357)
183 3pfi_A Holliday junction ATP-d 98.3 1.1E-05 3.7E-10 91.9 18.0 253 193-490 27-318 (338)
184 2ra8_A Uncharacterized protein 98.3 1.9E-07 6.5E-12 106.7 3.2 186 704-905 137-341 (362)
185 4gt6_A Cell surface protein; l 98.2 9.1E-05 3.1E-09 86.1 22.7 133 550-692 76-214 (394)
186 3eie_A Vacuolar protein sortin 98.2 2.2E-05 7.6E-10 88.5 16.8 174 193-391 16-219 (322)
187 3b9p_A CG5977-PA, isoform A; A 98.2 1.6E-05 5.4E-10 88.7 15.1 197 178-399 3-233 (297)
188 1d2n_A N-ethylmaleimide-sensit 98.2 7.7E-06 2.6E-10 89.9 12.4 197 195-419 33-263 (272)
189 3te6_A Regulatory protein SIR3 98.2 6.9E-06 2.4E-10 91.1 11.6 165 197-367 22-212 (318)
190 1sxj_E Activator 1 40 kDa subu 98.1 1.4E-05 4.7E-10 91.6 13.8 195 192-398 11-236 (354)
191 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3E-05 1E-09 84.5 15.6 176 194-393 5-215 (262)
192 3syl_A Protein CBBX; photosynt 98.1 1.7E-05 5.9E-10 88.9 13.6 150 196-368 32-219 (309)
193 2qp9_X Vacuolar protein sortin 98.1 4.1E-05 1.4E-09 87.4 16.5 181 193-398 49-260 (355)
194 4h09_A Hypothetical leucine ri 98.1 0.0005 1.7E-08 79.3 25.8 125 770-902 213-341 (379)
195 1xwi_A SKD1 protein; VPS4B, AA 98.0 7.4E-05 2.5E-09 84.0 16.9 180 194-398 11-222 (322)
196 2z4s_A Chromosomal replication 98.0 8.6E-06 3E-10 95.8 9.5 181 195-397 105-304 (440)
197 3uk6_A RUVB-like 2; hexameric 98.0 3.6E-05 1.2E-09 88.6 14.5 196 194-398 43-302 (368)
198 3vfd_A Spastin; ATPase, microt 98.0 5.5E-05 1.9E-09 87.7 15.5 182 193-399 113-326 (389)
199 3u61_B DNA polymerase accessor 98.0 4E-05 1.4E-09 86.5 13.9 180 191-396 22-213 (324)
200 2p65_A Hypothetical protein PF 98.0 3.3E-05 1.1E-09 79.1 11.5 50 193-244 20-69 (187)
201 2zan_A Vacuolar protein sortin 97.9 0.00011 3.7E-09 86.5 16.9 183 193-398 132-344 (444)
202 4h09_A Hypothetical leucine ri 97.9 0.0006 2E-08 78.7 23.0 42 844-887 306-348 (379)
203 3pvs_A Replication-associated 97.9 2.9E-05 9.8E-10 91.2 11.5 180 191-398 22-214 (447)
204 1l8q_A Chromosomal replication 97.9 5.2E-05 1.8E-09 85.6 11.7 177 194-394 10-203 (324)
205 1a5t_A Delta prime, HOLB; zinc 97.8 0.00016 5.5E-09 81.8 14.3 173 201-399 8-205 (334)
206 1io0_A Tropomodulin; LRR prote 97.8 4.8E-06 1.6E-10 85.7 1.2 110 768-904 30-161 (185)
207 3cf0_A Transitional endoplasmi 97.8 0.00018 6.2E-09 80.1 14.1 153 195-368 15-201 (301)
208 1sxj_C Activator 1 40 kDa subu 97.8 0.00037 1.3E-08 79.1 16.8 182 193-396 23-209 (340)
209 4b4t_J 26S protease regulatory 97.7 0.00022 7.5E-09 81.0 13.4 171 195-391 148-353 (405)
210 1io0_A Tropomodulin; LRR prote 97.6 7.9E-06 2.7E-10 84.1 0.3 116 742-884 28-164 (185)
211 4b4t_L 26S protease subunit RP 97.6 0.00046 1.6E-08 79.8 14.4 172 194-391 180-386 (437)
212 3hu3_A Transitional endoplasmi 97.6 0.00021 7.2E-09 84.7 11.8 153 194-368 203-387 (489)
213 1in4_A RUVB, holliday junction 97.6 0.00089 3.1E-08 75.6 16.4 264 193-500 23-325 (334)
214 4b4t_M 26S protease regulatory 97.6 0.00021 7.3E-09 82.5 11.0 172 194-391 180-386 (434)
215 3n70_A Transport activator; si 97.6 7.9E-05 2.7E-09 73.1 6.3 47 196-242 2-48 (145)
216 3e4g_A ATP synthase subunit S, 97.5 3.1E-05 1.1E-09 77.7 2.9 35 613-647 61-96 (176)
217 4b4t_H 26S protease regulatory 97.5 0.0011 3.6E-08 76.5 15.7 171 195-391 209-414 (467)
218 1lv7_A FTSH; alpha/beta domain 97.5 0.00067 2.3E-08 73.5 13.5 151 193-366 10-195 (257)
219 3pxg_A Negative regulator of g 97.5 0.00069 2.4E-08 80.3 14.1 146 193-366 178-338 (468)
220 4b4t_I 26S protease regulatory 97.4 0.00077 2.6E-08 76.8 12.8 171 195-391 182-387 (437)
221 1qvr_A CLPB protein; coiled co 97.4 0.00037 1.3E-08 89.2 11.5 51 192-244 167-217 (854)
222 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0017 5.7E-08 82.3 16.1 153 193-366 184-362 (758)
223 2r62_A Cell division protease 97.3 0.00023 7.8E-09 77.8 7.0 54 193-246 9-72 (268)
224 2gno_A DNA polymerase III, gam 97.3 0.00054 1.9E-08 76.0 9.7 146 199-366 1-152 (305)
225 3e4g_A ATP synthase subunit S, 97.3 0.00018 6E-09 72.2 5.1 39 750-788 61-99 (176)
226 2bjv_A PSP operon transcriptio 97.3 0.0004 1.4E-08 75.8 8.5 49 195-243 6-54 (265)
227 2ce7_A Cell division protein F 97.3 0.0022 7.4E-08 75.3 14.9 172 195-392 16-221 (476)
228 4b4t_K 26S protease regulatory 97.3 0.0016 5.6E-08 75.0 13.5 171 195-391 172-378 (428)
229 1ofh_A ATP-dependent HSL prote 97.2 0.00086 2.9E-08 74.8 10.6 48 196-243 16-75 (310)
230 4fcw_A Chaperone protein CLPB; 97.2 0.00071 2.4E-08 75.6 9.8 49 196-244 18-73 (311)
231 3ec2_A DNA replication protein 97.2 0.00023 7.8E-09 72.6 5.2 44 200-243 19-63 (180)
232 1ojl_A Transcriptional regulat 97.1 0.0011 3.8E-08 73.7 9.7 48 195-242 2-49 (304)
233 3pxi_A Negative regulator of g 97.1 0.0041 1.4E-07 78.6 15.8 146 193-366 178-338 (758)
234 3rw6_A Nuclear RNA export fact 97.0 0.00047 1.6E-08 74.5 5.4 64 847-911 169-237 (267)
235 3rw6_A Nuclear RNA export fact 97.0 0.00038 1.3E-08 75.2 4.3 14 684-697 221-234 (267)
236 3t15_A Ribulose bisphosphate c 96.9 0.0036 1.2E-07 69.1 11.9 29 217-245 35-63 (293)
237 1ixz_A ATP-dependent metallopr 96.9 0.005 1.7E-07 66.5 12.5 49 195-243 16-74 (254)
238 3cf2_A TER ATPase, transitiona 96.9 0.0021 7.3E-08 79.8 10.1 171 195-391 204-406 (806)
239 2kjq_A DNAA-related protein; s 96.9 0.0011 3.7E-08 65.2 5.9 27 218-244 36-62 (149)
240 1iy2_A ATP-dependent metallopr 96.8 0.0071 2.4E-07 66.2 12.9 152 194-366 39-223 (278)
241 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0084 2.9E-07 70.8 14.1 154 193-367 29-215 (499)
242 1eiw_A Hypothetical protein MT 96.7 0.0023 7.7E-08 58.5 6.4 66 18-102 3-68 (111)
243 3pxi_A Negative regulator of g 96.7 0.0033 1.1E-07 79.4 10.3 149 195-365 491-674 (758)
244 3m6a_A ATP-dependent protease 96.7 0.01 3.6E-07 71.4 13.7 50 197-246 83-136 (543)
245 2x8a_A Nuclear valosin-contain 96.6 0.02 6.7E-07 62.4 14.3 125 221-366 47-191 (274)
246 1ypw_A Transitional endoplasmi 96.5 0.0059 2E-07 77.1 10.5 151 194-367 203-386 (806)
247 2w58_A DNAI, primosome compone 95.8 0.011 3.8E-07 61.1 6.4 59 194-252 24-88 (202)
248 2c9o_A RUVB-like 1; hexameric 95.6 0.019 6.6E-07 67.6 8.5 52 194-245 36-90 (456)
249 1zu4_A FTSY; GTPase, signal re 95.6 0.036 1.2E-06 61.6 9.9 111 126-252 15-138 (320)
250 1r6b_X CLPA protein; AAA+, N-t 95.5 0.016 5.4E-07 73.3 7.7 48 195-242 458-512 (758)
251 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0044 1.5E-07 63.2 2.0 11 773-783 40-50 (197)
252 3co5_A Putative two-component 95.2 0.0034 1.2E-07 61.0 0.2 47 196-242 5-51 (143)
253 3rfe_A Platelet glycoprotein I 95.1 0.028 9.5E-07 53.5 6.1 53 851-905 11-66 (130)
254 2r44_A Uncharacterized protein 95.1 0.016 5.4E-07 65.2 5.1 47 195-245 27-73 (331)
255 1vma_A Cell division protein F 94.9 0.085 2.9E-06 58.1 10.2 45 201-245 81-131 (306)
256 1qvr_A CLPB protein; coiled co 94.9 0.023 7.9E-07 72.6 6.4 49 196-244 559-614 (854)
257 3hyn_A Putative signal transdu 94.8 0.088 3E-06 51.5 8.7 107 20-134 6-137 (189)
258 3cf2_A TER ATPase, transitiona 94.6 0.039 1.3E-06 68.6 7.3 151 195-367 477-662 (806)
259 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.027 9.1E-07 61.8 5.2 23 219-241 124-146 (331)
260 1jr3_D DNA polymerase III, del 94.6 0.29 9.9E-06 55.0 14.1 154 218-397 18-183 (343)
261 1j8m_F SRP54, signal recogniti 94.5 0.096 3.3E-06 57.5 9.3 28 218-245 98-125 (297)
262 1pgv_A TMD-1, tropomodulin TMD 94.4 0.013 4.4E-07 59.8 2.0 40 746-785 37-81 (197)
263 1qhx_A CPT, protein (chloramph 94.3 0.018 6.3E-07 58.0 2.8 25 219-243 4-28 (178)
264 3hws_A ATP-dependent CLP prote 94.2 0.031 1.1E-06 63.7 4.9 47 197-243 17-76 (363)
265 3c8u_A Fructokinase; YP_612366 94.1 0.047 1.6E-06 56.6 5.7 28 216-243 20-47 (208)
266 3e70_C DPA, signal recognition 94.1 0.22 7.6E-06 55.4 11.4 35 217-252 128-162 (328)
267 2yhs_A FTSY, cell division pro 94.0 0.13 4.6E-06 59.8 9.6 36 217-253 292-327 (503)
268 3kb2_A SPBC2 prophage-derived 94.0 0.026 8.8E-07 56.4 3.2 25 219-243 2-26 (173)
269 1rz3_A Hypothetical protein rb 94.0 0.056 1.9E-06 55.8 5.8 44 200-243 3-47 (201)
270 3ice_A Transcription terminati 93.9 0.029 9.9E-07 62.8 3.6 52 204-257 162-214 (422)
271 2ga8_A Hypothetical 39.9 kDa p 93.9 0.04 1.4E-06 61.4 4.7 49 198-246 2-52 (359)
272 2orw_A Thymidine kinase; TMTK, 93.9 0.035 1.2E-06 56.3 4.0 25 219-243 4-28 (184)
273 3vaa_A Shikimate kinase, SK; s 93.7 0.031 1.1E-06 57.6 3.2 26 218-243 25-50 (199)
274 3dm5_A SRP54, signal recogniti 93.7 0.31 1.1E-05 56.2 11.8 29 217-245 99-127 (443)
275 3trf_A Shikimate kinase, SK; a 93.7 0.031 1.1E-06 56.7 3.1 25 219-243 6-30 (185)
276 1odf_A YGR205W, hypothetical 3 93.5 0.073 2.5E-06 58.2 6.0 30 215-244 28-57 (290)
277 2xxa_A Signal recognition part 93.5 0.58 2E-05 54.1 13.8 71 173-245 46-127 (433)
278 3rfe_A Platelet glycoprotein I 93.3 0.11 3.6E-06 49.4 6.0 53 595-648 12-67 (130)
279 3lw7_A Adenylate kinase relate 93.3 0.036 1.2E-06 55.4 2.9 23 219-242 2-24 (179)
280 3nbx_X ATPase RAVA; AAA+ ATPas 93.3 0.068 2.3E-06 63.1 5.5 44 195-242 22-65 (500)
281 3kl4_A SRP54, signal recogniti 93.2 0.31 1.1E-05 56.1 10.9 29 217-245 96-124 (433)
282 1rj9_A FTSY, signal recognitio 93.2 0.19 6.5E-06 55.3 8.8 35 218-253 102-136 (304)
283 3bh0_A DNAB-like replicative h 93.2 0.14 4.7E-06 57.0 7.7 63 204-274 55-117 (315)
284 1nks_A Adenylate kinase; therm 93.1 0.076 2.6E-06 54.0 5.0 26 219-244 2-27 (194)
285 3b9q_A Chloroplast SRP recepto 93.1 0.22 7.6E-06 54.7 9.0 36 217-253 99-134 (302)
286 1zuh_A Shikimate kinase; alpha 93.1 0.045 1.6E-06 54.5 3.2 26 218-243 7-32 (168)
287 1g5t_A COB(I)alamin adenosyltr 93.0 0.17 5.9E-06 51.2 7.2 115 219-336 29-163 (196)
288 2qgz_A Helicase loader, putati 92.9 0.1 3.5E-06 57.7 6.1 50 203-252 136-187 (308)
289 2px0_A Flagellar biosynthesis 92.9 0.17 5.9E-06 55.5 7.8 26 218-243 105-130 (296)
290 1ly1_A Polynucleotide kinase; 92.9 0.052 1.8E-06 54.6 3.3 22 219-240 3-24 (181)
291 1ex7_A Guanylate kinase; subst 92.9 0.034 1.2E-06 56.4 1.8 29 219-247 2-30 (186)
292 2og2_A Putative signal recogni 92.8 0.34 1.2E-05 54.5 10.2 36 217-253 156-191 (359)
293 1zp6_A Hypothetical protein AT 92.8 0.052 1.8E-06 55.3 3.2 24 218-241 9-32 (191)
294 1um8_A ATP-dependent CLP prote 92.8 0.067 2.3E-06 61.2 4.5 25 219-243 73-97 (376)
295 1kag_A SKI, shikimate kinase I 92.8 0.04 1.4E-06 55.1 2.3 25 219-243 5-29 (173)
296 3uie_A Adenylyl-sulfate kinase 92.7 0.088 3E-06 54.1 4.9 26 218-243 25-50 (200)
297 3iij_A Coilin-interacting nucl 92.7 0.042 1.5E-06 55.4 2.4 25 218-242 11-35 (180)
298 2rhm_A Putative kinase; P-loop 92.7 0.064 2.2E-06 54.6 3.8 25 218-242 5-29 (193)
299 1sky_E F1-ATPase, F1-ATP synth 92.7 0.12 4.1E-06 59.8 6.3 37 220-257 153-190 (473)
300 3tlx_A Adenylate kinase 2; str 92.6 0.083 2.8E-06 56.3 4.7 26 217-242 28-53 (243)
301 2ze6_A Isopentenyl transferase 92.6 0.061 2.1E-06 57.7 3.5 25 219-243 2-26 (253)
302 2jaq_A Deoxyguanosine kinase; 92.5 0.058 2E-06 55.5 3.1 24 220-243 2-25 (205)
303 1kgd_A CASK, peripheral plasma 92.4 0.054 1.9E-06 54.7 2.7 25 219-243 6-30 (180)
304 1via_A Shikimate kinase; struc 92.4 0.058 2E-06 54.1 3.0 24 220-243 6-29 (175)
305 1tue_A Replication protein E1; 92.4 0.11 3.8E-06 52.9 4.9 45 199-244 40-84 (212)
306 2yvu_A Probable adenylyl-sulfa 92.4 0.11 3.6E-06 52.8 4.9 27 218-244 13-39 (186)
307 1kht_A Adenylate kinase; phosp 92.3 0.067 2.3E-06 54.4 3.3 26 219-244 4-29 (192)
308 2iyv_A Shikimate kinase, SK; t 92.3 0.053 1.8E-06 54.9 2.4 24 220-243 4-27 (184)
309 1g8p_A Magnesium-chelatase 38 92.2 0.065 2.2E-06 60.5 3.4 49 193-243 22-70 (350)
310 3t61_A Gluconokinase; PSI-biol 92.2 0.06 2.1E-06 55.5 2.8 24 219-242 19-42 (202)
311 1knq_A Gluconate kinase; ALFA/ 92.2 0.079 2.7E-06 53.1 3.6 25 218-242 8-32 (175)
312 1xjc_A MOBB protein homolog; s 92.1 0.11 3.9E-06 51.5 4.4 29 217-245 3-31 (169)
313 4eun_A Thermoresistant glucoki 91.9 0.075 2.6E-06 54.7 3.1 25 218-242 29-53 (200)
314 2c95_A Adenylate kinase 1; tra 91.9 0.073 2.5E-06 54.4 3.0 25 218-242 9-33 (196)
315 1uj2_A Uridine-cytidine kinase 91.9 0.083 2.8E-06 56.6 3.5 28 216-243 20-47 (252)
316 1tev_A UMP-CMP kinase; ploop, 91.9 0.087 3E-06 53.7 3.6 24 219-242 4-27 (196)
317 2vli_A Antibiotic resistance p 91.9 0.065 2.2E-06 54.1 2.6 25 219-243 6-30 (183)
318 4a1f_A DNAB helicase, replicat 91.9 0.21 7.3E-06 55.5 6.9 70 198-275 27-96 (338)
319 2plr_A DTMP kinase, probable t 91.9 0.13 4.4E-06 53.3 4.9 28 219-246 5-32 (213)
320 2bwj_A Adenylate kinase 5; pho 91.8 0.078 2.7E-06 54.3 3.1 25 219-243 13-37 (199)
321 1e6c_A Shikimate kinase; phosp 91.8 0.065 2.2E-06 53.5 2.4 25 219-243 3-27 (173)
322 1ukz_A Uridylate kinase; trans 91.8 0.092 3.2E-06 54.1 3.6 27 216-242 13-39 (203)
323 3fwy_A Light-independent proto 91.8 0.13 4.6E-06 56.8 5.1 37 216-252 46-82 (314)
324 2bdt_A BH3686; alpha-beta prot 91.8 0.085 2.9E-06 53.6 3.3 22 219-240 3-24 (189)
325 3cm0_A Adenylate kinase; ATP-b 91.8 0.089 3E-06 53.3 3.4 24 219-242 5-28 (186)
326 1y63_A LMAJ004144AAA protein; 91.7 0.08 2.7E-06 53.7 3.1 24 218-241 10-33 (184)
327 3a00_A Guanylate kinase, GMP k 91.7 0.065 2.2E-06 54.5 2.3 29 219-247 2-30 (186)
328 2pt5_A Shikimate kinase, SK; a 91.7 0.09 3.1E-06 52.2 3.3 24 220-243 2-25 (168)
329 3jvv_A Twitching mobility prot 91.7 0.2 6.9E-06 56.4 6.5 110 219-339 124-234 (356)
330 3tau_A Guanylate kinase, GMP k 91.7 0.077 2.6E-06 55.0 2.9 27 218-244 8-34 (208)
331 3io5_A Recombination and repai 91.7 0.29 9.9E-06 53.4 7.4 34 220-253 30-65 (333)
332 1qf9_A UMP/CMP kinase, protein 91.6 0.1 3.5E-06 53.0 3.7 26 218-243 6-31 (194)
333 1g41_A Heat shock protein HSLU 91.4 0.14 4.9E-06 59.0 5.1 51 196-246 16-78 (444)
334 2cdn_A Adenylate kinase; phosp 91.4 0.1 3.4E-06 53.7 3.4 26 218-243 20-45 (201)
335 1nn5_A Similar to deoxythymidy 91.4 0.14 4.7E-06 53.1 4.5 27 219-245 10-36 (215)
336 3p32_A Probable GTPase RV1496/ 91.3 0.27 9.3E-06 55.5 7.2 41 205-245 66-106 (355)
337 2qor_A Guanylate kinase; phosp 91.3 0.072 2.5E-06 55.0 2.2 26 218-243 12-37 (204)
338 2if2_A Dephospho-COA kinase; a 91.3 0.097 3.3E-06 53.9 3.2 21 220-240 3-23 (204)
339 3umf_A Adenylate kinase; rossm 91.3 0.12 4.1E-06 53.7 3.8 27 216-242 27-53 (217)
340 1uf9_A TT1252 protein; P-loop, 91.2 0.12 4E-06 53.1 3.6 26 216-241 6-31 (203)
341 1cke_A CK, MSSA, protein (cyti 91.2 0.11 3.6E-06 54.6 3.4 24 219-242 6-29 (227)
342 3hr8_A Protein RECA; alpha and 91.1 0.31 1.1E-05 54.7 7.3 51 203-253 45-96 (356)
343 3ney_A 55 kDa erythrocyte memb 91.0 0.1 3.4E-06 53.3 2.9 27 217-243 18-44 (197)
344 2pbr_A DTMP kinase, thymidylat 91.0 0.11 3.8E-06 52.8 3.3 24 220-243 2-25 (195)
345 2wwf_A Thymidilate kinase, put 91.0 0.11 3.8E-06 53.8 3.3 28 218-245 10-37 (212)
346 1aky_A Adenylate kinase; ATP:A 91.0 0.1 3.5E-06 54.5 3.0 25 219-243 5-29 (220)
347 3tr0_A Guanylate kinase, GMP k 91.0 0.11 3.6E-06 53.6 3.1 24 219-242 8-31 (205)
348 3tqc_A Pantothenate kinase; bi 91.0 0.18 6.3E-06 55.7 5.1 46 198-243 70-117 (321)
349 2bbw_A Adenylate kinase 4, AK4 90.9 0.12 4E-06 55.2 3.4 25 218-242 27-51 (246)
350 3a4m_A L-seryl-tRNA(SEC) kinas 90.9 0.12 4.2E-06 55.6 3.6 26 218-243 4-29 (260)
351 1ye8_A Protein THEP1, hypothet 90.8 0.12 4.3E-06 51.9 3.4 24 220-243 2-25 (178)
352 2qt1_A Nicotinamide riboside k 90.8 0.13 4.4E-06 53.2 3.5 25 217-241 20-44 (207)
353 4a74_A DNA repair and recombin 90.8 0.24 8.2E-06 51.9 5.7 37 206-242 13-49 (231)
354 2ck3_D ATP synthase subunit be 90.8 0.38 1.3E-05 55.5 7.6 51 219-273 154-205 (482)
355 2j37_W Signal recognition part 90.7 0.29 9.8E-06 57.7 6.8 29 217-245 100-128 (504)
356 1jjv_A Dephospho-COA kinase; P 90.6 0.12 4.1E-06 53.4 3.1 22 219-240 3-24 (206)
357 3asz_A Uridine kinase; cytidin 90.6 0.15 5.3E-06 52.7 3.9 26 218-243 6-31 (211)
358 1gtv_A TMK, thymidylate kinase 90.6 0.098 3.3E-06 54.3 2.4 25 220-244 2-26 (214)
359 2j41_A Guanylate kinase; GMP, 90.6 0.12 4.1E-06 53.3 3.1 24 219-242 7-30 (207)
360 2grj_A Dephospho-COA kinase; T 90.6 0.14 4.8E-06 52.2 3.5 26 217-242 11-36 (192)
361 3nwj_A ATSK2; P loop, shikimat 90.4 0.1 3.6E-06 55.6 2.4 25 219-243 49-73 (250)
362 1n0w_A DNA repair protein RAD5 90.4 0.21 7.3E-06 52.8 4.9 48 206-253 12-65 (243)
363 4gp7_A Metallophosphoesterase; 90.4 0.11 3.7E-06 52.0 2.4 20 219-238 10-29 (171)
364 3l0o_A Transcription terminati 90.3 0.072 2.5E-06 59.5 1.1 39 219-257 176-215 (427)
365 2p5t_B PEZT; postsegregational 90.3 0.23 7.8E-06 53.2 5.1 27 217-243 31-57 (253)
366 3fb4_A Adenylate kinase; psych 90.3 0.14 4.8E-06 53.2 3.4 23 220-242 2-24 (216)
367 1gvn_B Zeta; postsegregational 90.3 0.24 8.2E-06 54.1 5.3 26 217-242 32-57 (287)
368 1zd8_A GTP:AMP phosphotransfer 90.3 0.13 4.3E-06 54.2 3.0 24 219-242 8-31 (227)
369 2w0m_A SSO2452; RECA, SSPF, un 90.3 0.2 6.7E-06 52.6 4.5 34 219-252 24-57 (235)
370 2cvh_A DNA repair and recombin 90.3 0.22 7.5E-06 51.7 4.8 45 206-253 8-52 (220)
371 2wsm_A Hydrogenase expression/ 90.3 0.26 8.9E-06 51.3 5.4 45 199-245 13-57 (221)
372 2dr3_A UPF0273 protein PH0284; 90.2 0.2 6.9E-06 53.1 4.6 35 219-253 24-58 (247)
373 2z0h_A DTMP kinase, thymidylat 90.2 0.15 5.1E-06 52.0 3.4 25 220-244 2-26 (197)
374 1fx0_B ATP synthase beta chain 90.1 0.49 1.7E-05 54.8 7.8 51 219-273 166-217 (498)
375 2pez_A Bifunctional 3'-phospho 90.1 0.17 5.9E-06 50.8 3.7 26 218-243 5-30 (179)
376 2hf9_A Probable hydrogenase ni 90.1 0.41 1.4E-05 49.9 6.8 40 204-245 26-65 (226)
377 4e22_A Cytidylate kinase; P-lo 90.1 0.14 4.7E-06 54.9 3.1 25 219-243 28-52 (252)
378 3dl0_A Adenylate kinase; phosp 89.9 0.15 5E-06 53.1 3.1 23 220-242 2-24 (216)
379 1m7g_A Adenylylsulfate kinase; 89.9 0.18 6E-06 52.4 3.6 26 218-243 25-50 (211)
380 1zak_A Adenylate kinase; ATP:A 89.8 0.15 5E-06 53.4 3.0 25 219-243 6-30 (222)
381 3d3q_A TRNA delta(2)-isopenten 89.8 0.16 5.6E-06 56.3 3.4 25 219-243 8-32 (340)
382 1lvg_A Guanylate kinase, GMP k 89.8 0.12 4.2E-06 53.0 2.3 25 219-243 5-29 (198)
383 3k1j_A LON protease, ATP-depen 89.7 0.25 8.5E-06 60.3 5.3 47 195-245 41-87 (604)
384 3bgw_A DNAB-like replicative h 89.7 0.3 1E-05 56.9 5.7 48 204-252 184-231 (444)
385 3ake_A Cytidylate kinase; CMP 89.5 0.18 6.2E-06 51.9 3.4 24 220-243 4-27 (208)
386 1u94_A RECA protein, recombina 89.5 0.41 1.4E-05 53.9 6.5 53 201-253 45-98 (356)
387 2v54_A DTMP kinase, thymidylat 89.5 0.14 4.9E-06 52.6 2.6 24 219-242 5-28 (204)
388 1puj_A YLQF, conserved hypothe 89.4 1.9 6.4E-05 46.7 11.5 36 62-98 13-48 (282)
389 3be4_A Adenylate kinase; malar 89.3 0.19 6.7E-06 52.3 3.5 24 219-242 6-29 (217)
390 2zr9_A Protein RECA, recombina 89.2 0.28 9.6E-06 55.1 4.9 50 204-253 46-96 (349)
391 2f6r_A COA synthase, bifunctio 89.2 0.2 6.9E-06 54.5 3.6 24 217-240 74-97 (281)
392 1znw_A Guanylate kinase, GMP k 89.1 0.18 6E-06 52.2 2.9 24 219-242 21-44 (207)
393 2jeo_A Uridine-cytidine kinase 89.1 0.22 7.6E-06 53.0 3.8 25 218-242 25-49 (245)
394 3r20_A Cytidylate kinase; stru 89.1 0.2 6.7E-06 52.7 3.3 25 219-243 10-34 (233)
395 2ffh_A Protein (FFH); SRP54, s 89.1 1 3.5E-05 51.8 9.5 29 217-245 97-125 (425)
396 1htw_A HI0065; nucleotide-bind 89.1 0.2 6.9E-06 49.2 3.2 25 218-242 33-57 (158)
397 3aez_A Pantothenate kinase; tr 89.1 0.19 6.6E-06 55.5 3.4 28 216-243 88-115 (312)
398 1e4v_A Adenylate kinase; trans 89.1 0.21 7.1E-06 51.9 3.5 23 220-242 2-24 (214)
399 1ak2_A Adenylate kinase isoenz 89.0 0.2 6.7E-06 52.9 3.3 25 219-243 17-41 (233)
400 3crm_A TRNA delta(2)-isopenten 89.0 0.17 5.9E-06 55.8 2.8 24 219-242 6-29 (323)
401 3a8t_A Adenylate isopentenyltr 89.0 0.14 4.7E-06 56.7 2.0 25 218-242 40-64 (339)
402 2v3c_C SRP54, signal recogniti 88.9 1.2 3.9E-05 51.6 9.9 28 218-245 99-126 (432)
403 2q6t_A DNAB replication FORK h 88.9 0.7 2.4E-05 53.9 8.2 64 204-275 187-251 (444)
404 2xb4_A Adenylate kinase; ATP-b 88.9 0.21 7.2E-06 52.3 3.3 23 220-242 2-24 (223)
405 1svm_A Large T antigen; AAA+ f 88.8 0.3 1E-05 55.3 4.8 27 216-242 167-193 (377)
406 2ehv_A Hypothetical protein PH 88.8 0.28 9.6E-06 52.1 4.3 34 219-252 31-65 (251)
407 2r6a_A DNAB helicase, replicat 88.7 0.71 2.4E-05 54.0 8.1 35 219-253 204-239 (454)
408 2pt7_A CAG-ALFA; ATPase, prote 88.7 0.39 1.3E-05 53.6 5.5 103 219-336 172-275 (330)
409 2f1r_A Molybdopterin-guanine d 88.7 0.21 7.2E-06 49.8 3.0 26 219-244 3-28 (171)
410 1z6g_A Guanylate kinase; struc 88.6 0.16 5.5E-06 53.0 2.1 24 219-242 24-47 (218)
411 1xp8_A RECA protein, recombina 88.6 0.62 2.1E-05 52.6 7.1 54 200-253 55-109 (366)
412 1vht_A Dephospho-COA kinase; s 88.5 0.23 7.8E-06 51.7 3.3 22 219-240 5-26 (218)
413 3sr0_A Adenylate kinase; phosp 88.3 0.25 8.5E-06 50.9 3.4 23 220-242 2-24 (206)
414 3exa_A TRNA delta(2)-isopenten 88.3 0.22 7.7E-06 54.3 3.1 24 219-242 4-27 (322)
415 2i3b_A HCR-ntpase, human cance 88.2 0.22 7.4E-06 50.6 2.8 24 220-243 3-26 (189)
416 2eyu_A Twitching motility prot 88.2 0.33 1.1E-05 52.1 4.3 111 218-338 25-135 (261)
417 1np6_A Molybdopterin-guanine d 88.1 0.39 1.3E-05 48.0 4.6 27 218-244 6-32 (174)
418 1u0j_A DNA replication protein 88.1 0.39 1.3E-05 51.2 4.7 39 204-242 90-128 (267)
419 1a7j_A Phosphoribulokinase; tr 88.0 0.18 6E-06 55.3 2.1 26 218-243 5-30 (290)
420 1s96_A Guanylate kinase, GMP k 87.9 0.22 7.6E-06 51.9 2.7 26 218-243 16-41 (219)
421 2p67_A LAO/AO transport system 87.9 0.49 1.7E-05 53.1 5.7 29 216-244 54-82 (341)
422 1cp2_A CP2, nitrogenase iron p 87.9 0.47 1.6E-05 51.1 5.5 34 219-252 2-35 (269)
423 1yrb_A ATP(GTP)binding protein 87.7 0.46 1.6E-05 50.9 5.2 27 217-243 13-39 (262)
424 1cr0_A DNA primase/helicase; R 87.7 0.4 1.4E-05 52.6 4.8 34 219-252 36-70 (296)
425 3end_A Light-independent proto 87.6 0.44 1.5E-05 52.5 5.1 37 216-252 39-75 (307)
426 3foz_A TRNA delta(2)-isopenten 87.6 0.28 9.5E-06 53.5 3.3 25 218-242 10-34 (316)
427 1sq5_A Pantothenate kinase; P- 87.5 0.51 1.8E-05 52.0 5.6 27 217-243 79-105 (308)
428 3lnc_A Guanylate kinase, GMP k 87.5 0.18 6.2E-06 53.1 1.8 24 219-242 28-52 (231)
429 2r8r_A Sensor protein; KDPD, P 87.3 0.43 1.5E-05 49.5 4.4 26 220-245 8-33 (228)
430 1q3t_A Cytidylate kinase; nucl 87.2 0.32 1.1E-05 51.4 3.5 26 217-242 15-40 (236)
431 3e1s_A Exodeoxyribonuclease V, 87.1 1.6 5.6E-05 52.4 10.0 27 219-245 205-231 (574)
432 1v5w_A DMC1, meiotic recombina 86.9 0.75 2.6E-05 51.6 6.5 48 206-253 110-163 (343)
433 2j9r_A Thymidine kinase; TK1, 86.8 1.9 6.4E-05 44.3 8.8 109 218-336 28-138 (214)
434 1ltq_A Polynucleotide kinase; 86.8 0.32 1.1E-05 53.5 3.3 23 219-241 3-25 (301)
435 3b85_A Phosphate starvation-in 86.8 0.27 9.1E-06 50.8 2.5 22 220-241 24-45 (208)
436 2afh_E Nitrogenase iron protei 86.7 0.57 1.9E-05 51.1 5.2 28 218-245 2-29 (289)
437 1nlf_A Regulatory protein REPA 86.5 0.56 1.9E-05 50.9 5.1 26 219-244 31-56 (279)
438 2z43_A DNA repair and recombin 86.5 0.53 1.8E-05 52.4 5.0 49 205-253 94-148 (324)
439 2onk_A Molybdate/tungstate ABC 86.5 0.31 1.1E-05 51.6 2.9 23 219-241 25-47 (240)
440 1ls1_A Signal recognition part 86.5 0.55 1.9E-05 51.4 5.0 35 217-252 97-131 (295)
441 2qmh_A HPR kinase/phosphorylas 86.5 0.3 1E-05 49.5 2.5 24 219-242 35-58 (205)
442 4eaq_A DTMP kinase, thymidylat 86.4 0.39 1.3E-05 50.4 3.6 27 218-244 26-52 (229)
443 3eph_A TRNA isopentenyltransfe 86.3 0.4 1.4E-05 54.3 3.7 25 219-243 3-27 (409)
444 2pcj_A ABC transporter, lipopr 86.2 0.29 1E-05 51.2 2.5 23 219-241 31-53 (224)
445 1pzn_A RAD51, DNA repair and r 85.9 0.44 1.5E-05 53.6 3.9 37 206-242 119-155 (349)
446 3tif_A Uncharacterized ABC tra 85.8 0.31 1E-05 51.5 2.4 33 219-252 32-64 (235)
447 4hlc_A DTMP kinase, thymidylat 85.8 0.62 2.1E-05 47.9 4.7 29 219-247 3-31 (205)
448 3fdi_A Uncharacterized protein 85.7 0.43 1.5E-05 49.0 3.4 25 219-243 7-31 (201)
449 1oix_A RAS-related protein RAB 85.6 0.45 1.5E-05 48.2 3.5 24 218-241 29-52 (191)
450 2ocp_A DGK, deoxyguanosine kin 85.6 0.43 1.5E-05 50.5 3.5 25 219-243 3-27 (241)
451 1g8f_A Sulfate adenylyltransfe 85.5 0.58 2E-05 55.1 4.8 46 199-244 376-421 (511)
452 2dyk_A GTP-binding protein; GT 85.3 0.46 1.6E-05 46.2 3.3 23 219-241 2-24 (161)
453 3gfo_A Cobalt import ATP-bindi 85.1 0.35 1.2E-05 52.3 2.4 22 219-240 35-56 (275)
454 2cbz_A Multidrug resistance-as 85.1 0.35 1.2E-05 51.1 2.4 23 219-241 32-54 (237)
455 2d2e_A SUFC protein; ABC-ATPas 85.0 0.41 1.4E-05 51.1 2.9 23 219-241 30-52 (250)
456 3cr8_A Sulfate adenylyltranfer 84.9 0.78 2.7E-05 54.7 5.6 27 218-244 369-395 (552)
457 1b0u_A Histidine permease; ABC 84.9 0.36 1.2E-05 51.9 2.4 33 219-252 33-65 (262)
458 2zu0_C Probable ATP-dependent 84.9 0.41 1.4E-05 51.5 2.9 23 219-241 47-69 (267)
459 3gmt_A Adenylate kinase; ssgci 84.8 0.46 1.6E-05 49.6 3.1 23 220-242 10-32 (230)
460 2axn_A 6-phosphofructo-2-kinas 84.7 0.72 2.5E-05 54.8 5.1 29 218-246 35-63 (520)
461 1ji0_A ABC transporter; ATP bi 84.7 0.37 1.3E-05 51.0 2.4 23 219-241 33-55 (240)
462 2wji_A Ferrous iron transport 84.6 0.49 1.7E-05 46.6 3.2 22 219-240 4-25 (165)
463 4g1u_C Hemin import ATP-bindin 84.6 0.37 1.3E-05 51.9 2.4 33 219-252 38-70 (266)
464 2f9l_A RAB11B, member RAS onco 84.6 0.43 1.5E-05 48.6 2.8 24 218-241 5-28 (199)
465 2b8t_A Thymidine kinase; deoxy 84.5 0.76 2.6E-05 47.8 4.6 35 218-252 12-46 (223)
466 2olj_A Amino acid ABC transpor 84.5 0.38 1.3E-05 51.6 2.4 23 219-241 51-73 (263)
467 1g6h_A High-affinity branched- 84.5 0.38 1.3E-05 51.5 2.4 33 219-252 34-66 (257)
468 1sgw_A Putative ABC transporte 84.5 0.33 1.1E-05 50.3 1.8 23 219-241 36-58 (214)
469 3zvl_A Bifunctional polynucleo 84.4 0.35 1.2E-05 55.9 2.3 26 217-242 257-282 (416)
470 2qi9_C Vitamin B12 import ATP- 84.4 0.39 1.3E-05 51.2 2.4 32 219-252 27-58 (249)
471 1ypw_A Transitional endoplasmi 84.4 0.34 1.2E-05 61.1 2.2 52 195-246 477-539 (806)
472 2pze_A Cystic fibrosis transme 84.3 0.4 1.4E-05 50.4 2.4 23 219-241 35-57 (229)
473 2qm8_A GTPase/ATPase; G protei 84.2 1.1 3.9E-05 49.9 6.3 28 216-243 53-80 (337)
474 1vpl_A ABC transporter, ATP-bi 84.1 0.41 1.4E-05 51.2 2.4 22 219-240 42-63 (256)
475 1mv5_A LMRA, multidrug resista 84.1 0.43 1.5E-05 50.6 2.6 22 219-240 29-50 (243)
476 3kjh_A CO dehydrogenase/acetyl 84.1 0.87 3E-05 48.2 5.1 32 221-252 3-34 (254)
477 2ff7_A Alpha-hemolysin translo 84.0 0.41 1.4E-05 50.9 2.4 23 219-241 36-58 (247)
478 4dzz_A Plasmid partitioning pr 83.9 0.76 2.6E-05 47.0 4.4 34 219-252 2-36 (206)
479 2v9p_A Replication protein E1; 83.9 0.52 1.8E-05 51.6 3.1 25 218-242 126-150 (305)
480 3vr4_D V-type sodium ATPase su 83.7 0.5 1.7E-05 54.2 3.0 38 205-244 140-177 (465)
481 3ea0_A ATPase, para family; al 83.7 1 3.5E-05 47.5 5.4 29 217-245 3-32 (245)
482 1tq4_A IIGP1, interferon-induc 83.6 0.47 1.6E-05 54.4 2.8 24 217-240 68-91 (413)
483 4edh_A DTMP kinase, thymidylat 83.6 0.97 3.3E-05 46.8 5.0 27 219-245 7-33 (213)
484 2h92_A Cytidylate kinase; ross 83.6 0.46 1.6E-05 49.4 2.5 24 219-242 4-27 (219)
485 2ghi_A Transport protein; mult 83.6 0.44 1.5E-05 51.1 2.4 32 219-252 47-78 (260)
486 2ce2_X GTPase HRAS; signaling 83.4 0.56 1.9E-05 45.6 3.0 22 220-241 5-26 (166)
487 2nq2_C Hypothetical ABC transp 83.4 0.46 1.6E-05 50.7 2.4 23 219-241 32-54 (253)
488 2ihy_A ABC transporter, ATP-bi 83.4 0.45 1.5E-05 51.6 2.4 33 219-252 48-80 (279)
489 2ixe_A Antigen peptide transpo 83.3 0.45 1.5E-05 51.4 2.4 22 219-240 46-67 (271)
490 2yz2_A Putative ABC transporte 83.3 0.46 1.6E-05 51.2 2.4 22 219-240 34-55 (266)
491 2zej_A Dardarin, leucine-rich 83.3 0.48 1.7E-05 47.6 2.5 21 220-240 4-24 (184)
492 3sop_A Neuronal-specific septi 83.1 0.6 2E-05 50.4 3.2 23 220-242 4-26 (270)
493 1fzq_A ADP-ribosylation factor 83.0 0.88 3E-05 45.5 4.3 25 216-240 14-38 (181)
494 2zts_A Putative uncharacterize 83.0 0.52 1.8E-05 49.9 2.7 34 219-252 31-65 (251)
495 1z2a_A RAS-related protein RAB 82.9 0.74 2.5E-05 45.0 3.6 24 218-241 5-28 (168)
496 3fkq_A NTRC-like two-domain pr 82.8 1 3.4E-05 51.2 5.2 38 215-252 140-178 (373)
497 3lda_A DNA repair protein RAD5 82.7 0.59 2E-05 53.4 3.1 36 205-240 165-200 (400)
498 2wjg_A FEOB, ferrous iron tran 82.6 0.71 2.4E-05 46.3 3.4 23 218-240 7-29 (188)
499 1ny5_A Transcriptional regulat 82.5 1.5 5.3E-05 49.9 6.6 46 195-241 137-183 (387)
500 3kta_A Chromosome segregation 82.4 0.64 2.2E-05 46.6 3.0 23 220-242 28-50 (182)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-49 Score=402.70 Aligned_cols=182 Identities=40% Similarity=0.736 Sum_probs=160.6
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEcccccccccchHHHHHHHHhhCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEe
Q 001020 2 ASASSSSSSSINLRPEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIF 80 (1187)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~ 80 (1187)
|+++|+++|+++ +.++|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++||++||||
T Consensus 20 ~~~~s~~~s~~~--~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~ 97 (204)
T 3ozi_A 20 AISDSTNPSGSF--PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPII 97 (204)
T ss_dssp ----------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEE
T ss_pred ccccCCCCcCCC--CCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEE
Confidence 444444444433 679999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred cCCcccchhHHHHHHHHHHhccccCCCceEEeEEEEeccccccccccchhhHHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 001020 81 SEGYASSRWCLEEIVKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKLEERFMEWPEKLESWRIALREAANL 160 (1187)
Q Consensus 81 S~~y~~s~~c~~el~~~~~~~~~~~~~~~v~pvfy~vdp~~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~aL~~~a~~ 160 (1187)
|+||++|.||++||++|++|++. ..+++|+||||+|||++||+|+|+||+||++|++++ ..+++++||.||++||++
T Consensus 98 S~nYa~S~WCl~EL~~I~e~~~~-~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~l 174 (204)
T 3ozi_A 98 SSGYADSKWCLMELAEIVRRQEE-DPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDL 174 (204)
T ss_dssp CTTGGGCHHHHHHHHHHHHHHHH-CTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTS
T ss_pred EcccccCcHHHHHHHHHHHHHHh-cCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999872 368899999999999999999999999999999875 468999999999999999
Q ss_pred cCccccccchhhHHHHHHHHHHHHhhcc
Q 001020 161 SGFASHAIRPESLLIEKIVGEILKRLND 188 (1187)
Q Consensus 161 ~g~~~~~~~~e~~~i~~i~~~i~~~l~~ 188 (1187)
+||++.+...|+++|++|+++|+++++.
T Consensus 175 sG~~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 175 KGWHIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp CBEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CceecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999988899999999999999999864
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-48 Score=389.42 Aligned_cols=170 Identities=45% Similarity=0.725 Sum_probs=145.7
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHhhCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEI 94 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el 94 (1187)
..++|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 448999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCceEEeEEEEeccccccccccchhhHHHHHHHHhcCChHHHHHHHHHHHhcccccCccccccchhhHH
Q 001020 95 VKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKLEERFMEWPEKLESWRIALREAANLSGFASHAIRPESLL 174 (1187)
Q Consensus 95 ~~~~~~~~~~~~~~~v~pvfy~vdp~~vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~aL~~~a~~~g~~~~~~~~e~~~ 174 (1187)
++|++|.+ ..+++|+||||+|||++||+|+|+||+||++|+++ .+++++++||.||++||+++||++ .++|+++
T Consensus 85 ~~i~~~~~--~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~--~~~e~~~ 158 (176)
T 3jrn_A 85 VTIMDFEK--KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS--GDDDSKL 158 (176)
T ss_dssp HHHHHHHH--TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC--CSCHHHH
T ss_pred HHHHhhhc--cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec--CCCHHHH
Confidence 99999998 88999999999999999999999999999999987 678999999999999999999999 4679999
Q ss_pred HHHHHHHHHHhhccccc
Q 001020 175 IEKIVGEILKRLNDMYR 191 (1187)
Q Consensus 175 i~~i~~~i~~~l~~~~~ 191 (1187)
|++||++|.++|+.+++
T Consensus 159 i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 159 VDKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999987754
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-39 Score=399.24 Aligned_cols=297 Identities=16% Similarity=0.148 Sum_probs=230.1
Q ss_pred cchHHHHHHHHHhhccC-CCCeEEEEEEecCcchHHHHHHHHHH----HhhccCCceEEEEechhhhcccCChHHHHHHH
Q 001020 198 IGVESSIRQIESLLSTG-SKDVYTLGIWGIGGIGKTTLAGAIFN----RISNQFEGSYFLQNVREESERTGGLSQLRQKL 272 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~l 272 (1187)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|++++|+ ++++... .+...+.+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC--CCHHHHHHHH
Confidence 59999999999999654 34689999999999999999999997 788999999999 5554321 2456667777
Q ss_pred hhccccCCC--CCCccc-------cchhhcccCCc-eEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhhhc
Q 001020 273 FSEDESLSV--GIPNVG-------LNFRGKRLSRK-KIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLKNC 342 (1187)
Q Consensus 273 l~~~~~~~~--~~~~~~-------~~~~~~~l~~k-r~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 342 (1187)
+..+..... ...... .......+.++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 666522110 001111 12223367886 999999999999876 3332 2799999999999998877
Q ss_pred C-cceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCCCHHHHHHHHH-HhhcC
Q 001020 343 R-VDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGRKMEDWESAAN-KLKKV 420 (1187)
Q Consensus 343 ~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~-~l~~~ 420 (1187)
+ ...+|+|++|+.+||++||.++||.... .+.+.+++++|+++|+|+||||+++|+.|+.+.. +|...+. .+...
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 5 4568999999999999999999987542 4678889999999999999999999999987743 3333333 23322
Q ss_pred CCchHHHHHHHhcCCCCHHHHHHHh-----------hhhcccCCCCHHHHHHHHHhc--CCccc-----------cchHh
Q 001020 421 PHLDIQKVLKASYDGLDDEEQNIFL-----------DIACFFKGEDKDLVVEFLDAS--GFSAE-----------IGISV 476 (1187)
Q Consensus 421 ~~~~i~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~~~~l~~~~~~~--g~~~~-----------~~l~~ 476 (1187)
+...+..++.+||+.||++.|.||+ |||+||++++++ +++|.++ |+... .+++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 4567888899999999999999999 999999998877 7889998 66532 26999
Q ss_pred hhccccceee----CCEEEehHhhhhhhhhhhcccc
Q 001020 477 LVDKSLIIIL----KNKIIMHDLLQGMGREIVRQES 508 (1187)
Q Consensus 477 L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~ 508 (1187)
|+++||++.. ..+|.|||++|+||++++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999986 2479999999999999998765
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.5e-34 Score=385.35 Aligned_cols=304 Identities=19% Similarity=0.239 Sum_probs=235.0
Q ss_pred ccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHH---hhccCCceEEEEechhhhcccCChH
Q 001020 190 YRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNR---ISNQFEGSYFLQNVREESERTGGLS 266 (1187)
Q Consensus 190 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~l~ 266 (1187)
.|..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+|+..+++.... ...
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS--GLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH--HHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch--HHH
Confidence 4566778999999999999999766678899999999999999999999985 46668777755566542211 112
Q ss_pred HHHHHHhhccccCCC--CCCccccc----hhhcccCCc--eEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhh
Q 001020 267 QLRQKLFSEDESLSV--GIPNVGLN----FRGKRLSRK--KIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQV 338 (1187)
Q Consensus 267 ~l~~~ll~~~~~~~~--~~~~~~~~----~~~~~l~~k--r~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 338 (1187)
...+.+...+..... ........ .....+.++ |+||||||||+.++|+.+ ++||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 222223332211111 11111111 111234444 999999999999877654 689999999999998
Q ss_pred hhh-cCcceeEEecC-CCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCCCHHHHHHHHHH
Q 001020 339 LKN-CRVDGIYEVEA-LLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGRKMEDWESAANK 416 (1187)
Q Consensus 339 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~ 416 (1187)
+.. .+....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. .+|+..++.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 854 45667899996 99999999999998543 233446799999999999999999999998776 579999988
Q ss_pred hhcCCC-----------chHHHHHHHhcCCCCHHHHHHHhhhhcccCCC--CHHHHHHHHHhcCCccccchHhhhccccc
Q 001020 417 LKKVPH-----------LDIQKVLKASYDGLDDEEQNIFLDIACFFKGE--DKDLVVEFLDASGFSAEIGISVLVDKSLI 483 (1187)
Q Consensus 417 l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~sLi 483 (1187)
+..... ..+..+|.+||+.|++++|.||++||+||+++ +.+.++.+|.+++..++.+++.|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 865431 35899999999999999999999999999986 67789999988777788899999999999
Q ss_pred eee-CC---EEEehHhhhhhhhhhhccc
Q 001020 484 IIL-KN---KIIMHDLLQGMGREIVRQE 507 (1187)
Q Consensus 484 ~~~-~~---~~~mHdll~~~~~~i~~~e 507 (1187)
+.. ++ +|.||+++|+++++...++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 33 4999999999999987655
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.6e-34 Score=349.09 Aligned_cols=277 Identities=14% Similarity=0.121 Sum_probs=208.9
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHH--HhhccCCceEEEEechhhhcccCChHHHHHHH
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFN--RISNQFEGSYFLQNVREESERTGGLSQLRQKL 272 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~l 272 (1187)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..+||.++++. .....+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHH
Confidence 45699999999999999753 3478999999999999999999997 578899984444466543 2233333333
Q ss_pred hhccccCC----CCCC---ccc------cchhhc---ccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 273 FSEDESLS----VGIP---NVG------LNFRGK---RLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 273 l~~~~~~~----~~~~---~~~------~~~~~~---~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
...+.... .... ... ...... .+.++|+||||||||+.++|+.+. +|||||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 32211111 0000 000 001111 236899999999999999998763 799999999999
Q ss_pred hhhhhcCcceeEEec------CCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCC--CHH
Q 001020 337 QVLKNCRVDGIYEVE------ALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGR--KME 408 (1187)
Q Consensus 337 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~--~~~ 408 (1187)
.++..+.....|+|+ +|+.+||++||+++. +... .++..++ |+|+||||+++|+.|+++ +.+
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP------QDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 988654444467777 999999999999984 3221 1334443 999999999999999977 778
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHhcCCCCHHH-HHHHhhhhcccCCCC--HHHHHHHHHhcCC-ccccchHhhhccccce
Q 001020 409 DWESAANKLKKVPHLDIQKVLKASYDGLDDEE-QNIFLDIACFFKGED--KDLVVEFLDASGF-SAEIGISVLVDKSLII 484 (1187)
Q Consensus 409 ~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~--~~~l~~~~~~~g~-~~~~~l~~L~~~sLi~ 484 (1187)
+|+.. ....+..+|++||+.|++++ |.||++||+||++.+ .+.+..+|.++|. .++.+++.|+++|||+
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 88763 35689999999999999999 999999999999864 5678999988753 4677899999999999
Q ss_pred ee--CCEEEehHhhhhhh
Q 001020 485 IL--KNKIIMHDLLQGMG 500 (1187)
Q Consensus 485 ~~--~~~~~mHdll~~~~ 500 (1187)
.. .++|.|||++++++
T Consensus 419 ~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK 436 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh
Confidence 86 46899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=1.6e-32 Score=341.28 Aligned_cols=340 Identities=19% Similarity=0.241 Sum_probs=242.2
Q ss_pred cccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh---hccCC-ceEEEEechhhhcccCC
Q 001020 189 MYRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI---SNQFE-GSYFLQNVREESERTGG 264 (1187)
Q Consensus 189 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~~~~~~~ 264 (1187)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. ...|+ .++|+ ++...... ..
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv-~~~~~~~~-~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV-SVGKQDKS-GL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEE-EEESCCHH-HH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEE-ECCCCchH-HH
Confidence 345667889999999999999997655678999999999999999999999753 77896 45665 44432111 11
Q ss_pred hHHHHHHHhhccccCCC--CCCcccc----chhhcccC--CceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 265 LSQLRQKLFSEDESLSV--GIPNVGL----NFRGKRLS--RKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~--~~~~~~~----~~~~~~l~--~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
+..+++ +...+..... ....... ......+. .+++||||||||+..+++.+ ++|++||||||++
T Consensus 196 ~~~l~~-l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 196 LMKLQN-LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHH-HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHH-HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 223322 1122110000 0000000 01111233 37899999999998776543 6799999999999
Q ss_pred hhhhhcCcceeEEe---cCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcCCCHHHHHHH
Q 001020 337 QVLKNCRVDGIYEV---EALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFGRKMEDWESA 413 (1187)
Q Consensus 337 ~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~ 413 (1187)
.++..++ ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... .+|+..
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 8876543 345666 4899999999999998652 222346789999999999999999999998764 469988
Q ss_pred HHHhhcCC-----------CchHHHHHHHhcCCCCHHHHHHHhhhhcccCCC--CHHHHHHHHHhcCCccccchHhhhcc
Q 001020 414 ANKLKKVP-----------HLDIQKVLKASYDGLDDEEQNIFLDIACFFKGE--DKDLVVEFLDASGFSAEIGISVLVDK 480 (1187)
Q Consensus 414 l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~ 480 (1187)
++.+.... ...+..++..||+.|+++.|.||+++|+||++. +.+.+..+|...+..+...++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 88876533 246899999999999999999999999999875 56778888876655677889999999
Q ss_pred ccceeeC----CEEEehHhhhhhhhhhhcccc-------------------cCCCCCceeeeccccchhhhcccccccee
Q 001020 481 SLIIILK----NKIIMHDLLQGMGREIVRQES-------------------IKDPGKRSRLWNHEDIYHVLTRNKGTETI 537 (1187)
Q Consensus 481 sLi~~~~----~~~~mHdll~~~~~~i~~~e~-------------------~~~~~~~~rl~~~~~i~~~l~~~~~~~~v 537 (1187)
|||+... .+|.||+++|+++++....+. ...++.+.++|..+.++|++..+... .+
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~ 500 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-EL 500 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HH
Confidence 9998762 379999999999987732110 12234455667677777777666443 34
Q ss_pred cccccccc
Q 001020 538 EGISLDMS 545 (1187)
Q Consensus 538 ~~i~ld~~ 545 (1187)
..+..++.
T Consensus 501 ~~l~~~~~ 508 (591)
T 1z6t_A 501 CALMFSLD 508 (591)
T ss_dssp HHHHSCHH
T ss_pred HHHHhCHH
Confidence 44544443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.4e-31 Score=342.42 Aligned_cols=373 Identities=19% Similarity=0.220 Sum_probs=249.4
Q ss_pred cCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCC-CCCCcc-c-ccccceEeCcCCCcc-c
Q 001020 552 LNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLK-AMPSYI-H-QENLIALEMPHSSVE-K 627 (1187)
Q Consensus 552 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~-~~~L~~L~L~~~~i~-~ 627 (1187)
..+..|.++++|+.|++++|.+.... ... ...+|++|++++|.+. .+|..+ . +++|++|+|++|.+. .
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~------~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPI------PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESC------CCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred cccHHHhcCCCCCEEECCCCcccCcc------Ccc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 33566777777777777766442110 000 2334555555555554 444443 2 255555555555554 3
Q ss_pred ccccccccCCccEEEcCCCCCCcccCC--CCCCCCccEEecCCCCCccccc-------------------------cccc
Q 001020 628 LWGGAQQLVNLKYMDLSHSKQLTEIPD--LSLASNIEKLNLDGCSSLLEIH-------------------------PSIK 680 (1187)
Q Consensus 628 l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~~-------------------------~~i~ 680 (1187)
+|..+..+++|++|+|++|.+...+|. +..+++|++|+|++|.....+| ..+.
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 344455555555555555544434442 4455555555555544333333 3333
Q ss_pred C--CCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccc---cccceEeecCcccc-ccchhhhccCCCc
Q 001020 681 Y--LNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIA---CTIEELFLDGTAIE-ELPLSIECLSRLI 753 (1187)
Q Consensus 681 ~--L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~---~~L~~L~L~~~~i~-~lp~~i~~l~~L~ 753 (1187)
. +++|+.|++++|.....+|..+ ++++|++|++++|.....+|..+ .+|+.|++++|.+. .+|..+..+++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 3 4556666666665544566555 47777777777776655556543 35778888888777 6777788888888
Q ss_pred EEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc-ccchhhhcCCCCCEEEccccC
Q 001020 754 TLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR-ELPSSIVQLNNLYRLSFERYQ 832 (1187)
Q Consensus 754 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~L~l~~~~ 832 (1187)
.|+|++|.....+|..+.++++|+.|+|++|.....+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 8888888777777888888888888888888777788888888888888888888887 677788888888888888775
Q ss_pred CCCcC-------------------------------------------------------------------CccCCCCC
Q 001020 833 GKSHM-------------------------------------------------------------------GLRLPTMS 845 (1187)
Q Consensus 833 ~~~~~-------------------------------------------------------------------~~~l~~l~ 845 (1187)
..... +...+.+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 43111 01112355
Q ss_pred CCCCccEEeccCCCCC-CcccccCCCCCCcEEECccCCCc-cccccccCCCCCCEEeecCCCCCCcCCCC---CCCCCee
Q 001020 846 GLRILTNLNLSDCGIT-ELPNSLGQLSSLHILFRDRNNFE-RIPTSIIHLTNLFLLKLSYCERLQSLPEL---PCNISDM 920 (1187)
Q Consensus 846 ~l~~L~~L~Ls~~~l~-~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~L~~lp~l---~~sL~~L 920 (1187)
.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.++ .+|..+.++++|+.|+|++|+--..+|.. .++|+.|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 6788999999999988 58889999999999999999998 78889999999999999998766678753 3578889
Q ss_pred eccccccccccc
Q 001020 921 DANCCTSLKELS 932 (1187)
Q Consensus 921 ~i~~C~~L~~l~ 932 (1187)
++++|.--..++
T Consensus 710 ~ls~N~l~g~iP 721 (768)
T 3rgz_A 710 DLSNNNLSGPIP 721 (768)
T ss_dssp ECCSSEEEEECC
T ss_pred ECcCCcccccCC
Confidence 999885444444
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2e-31 Score=333.21 Aligned_cols=347 Identities=14% Similarity=0.152 Sum_probs=280.9
Q ss_pred CCCCCCCCcc-cccccceEeCcCCCccc------------------cccccc--ccCCccEEEcCCCCCCcccCC-CCCC
Q 001020 601 YPLKAMPSYI-HQENLIALEMPHSSVEK------------------LWGGAQ--QLVNLKYMDLSHSKQLTEIPD-LSLA 658 (1187)
Q Consensus 601 ~~l~~lp~~~-~~~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~l 658 (1187)
|.+..+|..+ ++++|++|+|++|.+.. +|..+. ++++|++|+|++|.+...+|. ++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4455578766 78999999999999998 899988 999999999999998888886 8999
Q ss_pred CCccEEecCCCCCcc--cccccccCC------CcccEEEccCccCCcccCc--cc-cccccceeeccccCCCCccccc--
Q 001020 659 SNIEKLNLDGCSSLL--EIHPSIKYL------NKLAILSLRHCKCIKSLPT--SI-HLESLKQLFLSGCSNLNTFPEI-- 725 (1187)
Q Consensus 659 ~~L~~L~L~~c~~l~--~~~~~i~~L------~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~~~~~-- 725 (1187)
++|++|+|++|..+. .+|..++.+ ++|++|++++|... .+|. .+ ++++|++|++++|.....+|..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 999999999987344 688888776 99999999998754 8887 55 6999999999998766577722
Q ss_pred ccccceEeecCccccccchhhhccCC-CcEEeccCCCCCcccccccCCCC--CCCEEeccCCCCCccCCcccC-------
Q 001020 726 ACTIEELFLDGTAIEELPLSIECLSR-LITLNLENCSRLECLSSSLCKLK--SLQHLNLFGCTKVERLPDEFG------- 795 (1187)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~L~~~~~l~~lp~~l~------- 795 (1187)
+.+|+.|++++|.++.+|..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|......|..+.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 34788999999999999999999999 999999998755 8888777655 899999999988888888887
Q ss_pred CcccccEEEcccCcccccchhhh-cCCCCCEEEccccCCCCcCCccCC----CCCCCCCccEEeccCCCCCCcccccC--
Q 001020 796 NLEALMEMKAVRSSIRELPSSIV-QLNNLYRLSFERYQGKSHMGLRLP----TMSGLRILTNLNLSDCGITELPNSLG-- 868 (1187)
Q Consensus 796 ~l~~L~~L~l~~n~i~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~l~----~l~~l~~L~~L~Ls~~~l~~l~~~l~-- 868 (1187)
.+++|+.|++++|.++.+|..+. .+++|+.|++++|.........+. .+.++++|+.|+|++|.++.+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 78899999999999999988654 589999999999887632111110 02233489999999999999998887
Q ss_pred CCCCCcEEECccCCCccccccccCCCCCCEEeecC------CCCCCcCCCC---CCCCCeeecccccccccccCCccccC
Q 001020 869 QLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSY------CERLQSLPEL---PCNISDMDANCCTSLKELSGLSILFT 939 (1187)
Q Consensus 869 ~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~------c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~~~~~~~ 939 (1187)
.+++|+.|+|++|.++.+|..+.++++|+.|+|++ |.....+|.. .++|+.|++++|.- ..++.. +
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~---~- 585 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK---I- 585 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC---C-
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh---H-
Confidence 89999999999999999999999999999999955 4445666642 46899999999854 666532 1
Q ss_pred CCCCCCCceeeecCCCC
Q 001020 940 PTTWNSQGLNFINCFNL 956 (1187)
Q Consensus 940 ~~~~~l~~L~~~~C~~L 956 (1187)
.+.++.|++.+|+-.
T Consensus 586 --~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 586 --TPNISVLDIKDNPNI 600 (636)
T ss_dssp --CTTCCEEECCSCTTC
T ss_pred --hCcCCEEECcCCCCc
Confidence 157788888887643
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.5e-30 Score=319.97 Aligned_cols=400 Identities=17% Similarity=0.141 Sum_probs=258.1
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCC-Ccc-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMP-SYI-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L 618 (1187)
.+|++.+....+.+.+|.++++|++|++++|.+. ........-..+|++|++++|.+..++ ..+ .+++|++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 5667777777788899999999999999987542 222222233568999999999998874 445 88999999
Q ss_pred eCcCCCcccc-cccccccCCccEEEcCCCCCCc-ccCCCCCCCCccEEecCCCCCcccccccccCCCccc--EEEccCcc
Q 001020 619 EMPHSSVEKL-WGGAQQLVNLKYMDLSHSKQLT-EIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLA--ILSLRHCK 694 (1187)
Q Consensus 619 ~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~-~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~--~L~L~~c~ 694 (1187)
++++|.+..+ +..+..+++|++|+|++|.+.. ..|.+..+++|++|++++|......+..++.+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999998 5778999999999999998776 446777799999999999876655567788999999 89999988
Q ss_pred CCcccCccccccccceeeccccC----------------------------------------------------CCCcc
Q 001020 695 CIKSLPTSIHLESLKQLFLSGCS----------------------------------------------------NLNTF 722 (1187)
Q Consensus 695 ~l~~lp~~~~l~~L~~L~Ls~c~----------------------------------------------------~l~~~ 722 (1187)
.....|..+...+|+.|++++|. .....
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 66555555555555555555543 22221
Q ss_pred cc---cccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCc-ccCCcc
Q 001020 723 PE---IACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPD-EFGNLE 798 (1187)
Q Consensus 723 ~~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~ 798 (1187)
+. .+.+|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....+|. .+..++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 21 12356666666666666666666666666666666655555555666666666666666655444443 356666
Q ss_pred cccEEEcccCccccc---chhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-c-cccCCCCCC
Q 001020 799 ALMEMKAVRSSIREL---PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-P-NSLGQLSSL 873 (1187)
Q Consensus 799 ~L~~L~l~~n~i~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~-~~l~~l~~L 873 (1187)
+|++|++++|.+..+ +..+..+++|+.|++++|..... ....+..+++|+.|++++|.+... + ..+..+++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE---CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC---CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 666666666666644 44556666666666666654321 122355566666666666666543 2 235566666
Q ss_pred cEEECccCCCccc-cccccCCCCCCEEeecCCCCCCc-CC-----CCCCCCCeeecccccccccccCCccccCCCCCCCC
Q 001020 874 HILFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQS-LP-----ELPCNISDMDANCCTSLKELSGLSILFTPTTWNSQ 946 (1187)
Q Consensus 874 ~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~-lp-----~l~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~ 946 (1187)
+.|+|++|.+... |..+..+++|+.|+|++|+.-.. +| .-.++|+.|++++| .++.+.... ....+.++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~ 503 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHA---FTSLKMMN 503 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTT---TTTCTTCC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhh---hccccCCC
Confidence 6666666666543 34556666666666666543221 11 11346666666666 233332111 12234555
Q ss_pred ceeeecC
Q 001020 947 GLNFINC 953 (1187)
Q Consensus 947 ~L~~~~C 953 (1187)
.|++.+|
T Consensus 504 ~L~Ls~N 510 (606)
T 3t6q_A 504 HVDLSHN 510 (606)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666555
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.7e-30 Score=321.53 Aligned_cols=241 Identities=20% Similarity=0.173 Sum_probs=177.8
Q ss_pred cccccceeeccccCCCCccccc-ccccceEeecCcc-ccccchhhhccCCCcEEeccCCCCCcc--cccccCCCCCCCEE
Q 001020 704 HLESLKQLFLSGCSNLNTFPEI-ACTIEELFLDGTA-IEELPLSIECLSRLITLNLENCSRLEC--LSSSLCKLKSLQHL 779 (1187)
Q Consensus 704 ~l~~L~~L~Ls~c~~l~~~~~~-~~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L 779 (1187)
.+++|++|++++|.. ..+|.. +.+|+.|++++|. +..+ .+..+++|+.|++++|..... .|..+..+++|++|
T Consensus 305 ~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp TTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 467888888888876 666653 4578888998884 3333 466888899999988765443 36778888889999
Q ss_pred eccCCCCCccCCcccCCcccccEEEcccCcccccch--hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccC
Q 001020 780 NLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS--SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSD 857 (1187)
Q Consensus 780 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 857 (1187)
++++|. +..+|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|..... ....+.++++|+.|+|++
T Consensus 382 ~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 382 DLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID---FDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp ECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECTT
T ss_pred ECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc---chhhhcCCCCCCEEECCC
Confidence 998875 55577788888889999999888887654 678888899999988876542 223377888899999998
Q ss_pred CCCCC--cccccCCCCCCcEEECccCCCccc-cccccCCCCCCEEeecCCCCCCcCCCC---CCCCCeeecccccccccc
Q 001020 858 CGITE--LPNSLGQLSSLHILFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQSLPEL---PCNISDMDANCCTSLKEL 931 (1187)
Q Consensus 858 ~~l~~--l~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~l 931 (1187)
|.+.. +|..++.+++|+.|+|++|.++.+ |..+.++++|+.|+|++|+.....|.. .++|+.|++++|. ++.+
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 536 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETS 536 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Cccc
Confidence 88876 677788888999999999888866 457888889999999887544443432 3578888888884 6666
Q ss_pred cCCccccCCCCC-CCCceeeecCCCC
Q 001020 932 SGLSILFTPTTW-NSQGLNFINCFNL 956 (1187)
Q Consensus 932 ~~~~~~~~~~~~-~l~~L~~~~C~~L 956 (1187)
+.. + ...+ .++.|++.+++-.
T Consensus 537 p~~-~---~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 537 KGI-L---QHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ESC-G---GGSCTTCCEEECCSCCCC
T ss_pred CHh-H---hhhcccCcEEEccCCCcc
Confidence 633 1 1122 4677877776543
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.4e-30 Score=333.08 Aligned_cols=333 Identities=21% Similarity=0.224 Sum_probs=231.5
Q ss_pred cccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCc
Q 001020 542 LDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMP 621 (1187)
Q Consensus 542 ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~ 621 (1187)
++++.+......+. |.++++|+.|++++|.+... .+..+. ...+|++|++++|.+........+++|++|+++
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-----~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~ 277 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-----FSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-----HHHHTT-TCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-----ccHHHh-cCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence 34444433332333 88899999999988754311 122222 245899999999988754444488999999999
Q ss_pred CCCcc-ccccccccc-CCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCccccccc-ccCCCcccEEEccCccCCc
Q 001020 622 HSSVE-KLWGGAQQL-VNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPS-IKYLNKLAILSLRHCKCIK 697 (1187)
Q Consensus 622 ~~~i~-~l~~~~~~l-~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~-i~~L~~L~~L~L~~c~~l~ 697 (1187)
+|.+. .+|..+..+ ++|++|+|++|.+...+|. ++.+++|++|+|++|.....+|.. ++.+++|++|++++|....
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 99998 788887664 9999999999988777775 899999999999998766678866 8999999999999998666
Q ss_pred ccCccc-ccc-ccceeeccccCCCCccccc-----ccccceEeecCcccc-ccchhhhccCCCcEEeccCCCCCcccccc
Q 001020 698 SLPTSI-HLE-SLKQLFLSGCSNLNTFPEI-----ACTIEELFLDGTAIE-ELPLSIECLSRLITLNLENCSRLECLSSS 769 (1187)
Q Consensus 698 ~lp~~~-~l~-~L~~L~Ls~c~~l~~~~~~-----~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 769 (1187)
.+|..+ +++ +|++|++++|.....+|.. ..+|++|++++|.+. .+|..+..+++|+.|+|++|.....+|..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 778776 455 8888888887655444433 335777777777776 56666777777777777777666666666
Q ss_pred cCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc-ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCC
Q 001020 770 LCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR-ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLR 848 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 848 (1187)
+..+++|+.|++++|.....+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|..... ....+..++
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~p~~~~~l~ 514 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE---IPKWIGRLE 514 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC---CCGGGGGCT
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc---CChHHhcCC
Confidence 777777777777776666666666666677777777776666 5566666666777777766665432 111255566
Q ss_pred CccEEeccCCCCC-CcccccCCCCCCcEEECccCCCc
Q 001020 849 ILTNLNLSDCGIT-ELPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~-~l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
+|+.|+|++|.+. .+|..++.+++|+.|+|++|.++
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 6666666666665 35555666666666666665554
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.5e-30 Score=330.35 Aligned_cols=346 Identities=14% Similarity=0.136 Sum_probs=257.1
Q ss_pred CCCCCCCCcc-cccccceEeCcCCCccc------------------cccccc--ccCCccEEEcCCCCCCcccCC-CCCC
Q 001020 601 YPLKAMPSYI-HQENLIALEMPHSSVEK------------------LWGGAQ--QLVNLKYMDLSHSKQLTEIPD-LSLA 658 (1187)
Q Consensus 601 ~~l~~lp~~~-~~~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~l 658 (1187)
|.+..+|..+ ++++|++|+|++|.+.. +|..+. ++++|++|+|++|.+...+|. ++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444477766 78888888888888887 888877 888888888888888888775 8888
Q ss_pred CCccEEecCCCCCcc--cccccccCCC-------cccEEEccCccCCcccCc--cc-cccccceeeccccCCCCccccc-
Q 001020 659 SNIEKLNLDGCSSLL--EIHPSIKYLN-------KLAILSLRHCKCIKSLPT--SI-HLESLKQLFLSGCSNLNTFPEI- 725 (1187)
Q Consensus 659 ~~L~~L~L~~c~~l~--~~~~~i~~L~-------~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~~~~~- 725 (1187)
++|++|+|++|..+. .+|..++.++ +|++|+|++|... .+|. .+ ++++|+.|+|++|... .+|..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhc
Confidence 888888888876343 5777666554 8888888887744 7887 55 6888888888887754 66622
Q ss_pred -ccccceEeecCccccccchhhhccCC-CcEEeccCCCCCcccccccCCCCC--CCEEeccCCCCCccCCc---ccC--C
Q 001020 726 -ACTIEELFLDGTAIEELPLSIECLSR-LITLNLENCSRLECLSSSLCKLKS--LQHLNLFGCTKVERLPD---EFG--N 796 (1187)
Q Consensus 726 -~~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~~--L~~L~L~~~~~l~~lp~---~l~--~ 796 (1187)
+.+|+.|+|++|.+..+|..+..+++ |+.|+|++|... .+|..+..++. |+.|+|++|.....+|. .+. .
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 34678888888888888888888888 888888887754 77877776654 88888888876655443 222 3
Q ss_pred cccccEEEcccCcccccchhhh-cCCCCCEEEccccCCCCcCCccCC----CCCCCCCccEEeccCCCCCCcccccC--C
Q 001020 797 LEALMEMKAVRSSIRELPSSIV-QLNNLYRLSFERYQGKSHMGLRLP----TMSGLRILTNLNLSDCGITELPNSLG--Q 869 (1187)
Q Consensus 797 l~~L~~L~l~~n~i~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~l~----~l~~l~~L~~L~Ls~~~l~~l~~~l~--~ 869 (1187)
+++|+.|++++|.+..+|..+. .+++|+.|++++|.........+. .+.++++|+.|+|++|+++.+|..+. .
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 4478888888888888887665 788888888888876532111110 12234488888888888888888886 8
Q ss_pred CCCCcEEECccCCCccccccccCCCCCCEEeecC------CCCCCcCCCC---CCCCCeeecccccccccccCCccccCC
Q 001020 870 LSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSY------CERLQSLPEL---PCNISDMDANCCTSLKELSGLSILFTP 940 (1187)
Q Consensus 870 l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~------c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~~~~~~~~ 940 (1187)
+++|+.|+|++|.++.+|..+.++++|+.|+|++ |.....+|.. .++|+.|++++|.- ..++.. +
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~---l-- 825 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK---L-- 825 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC---C--
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh---h--
Confidence 8888888888888888888888888888888876 4445566642 46888888888854 666532 1
Q ss_pred CCCCCCceeeecCCCC
Q 001020 941 TTWNSQGLNFINCFNL 956 (1187)
Q Consensus 941 ~~~~l~~L~~~~C~~L 956 (1187)
.+.++.|++++|+-.
T Consensus 826 -~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 826 -TPQLYILDIADNPNI 840 (876)
T ss_dssp -CSSSCEEECCSCTTC
T ss_pred -cCCCCEEECCCCCCC
Confidence 146777888887644
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.6e-29 Score=310.81 Aligned_cols=398 Identities=18% Similarity=0.136 Sum_probs=272.6
Q ss_pred ccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCC--CCcccccccceEeC
Q 001020 543 DMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAM--PSYIHQENLIALEM 620 (1187)
Q Consensus 543 d~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~L 620 (1187)
+++.+....+.+.+|.++++|++|++++|.+... .........+|++|++++|.+..+ |..+.+++|++|++
T Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSI------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred eCCCCcccccChhhhcccccccEeeccccCcccC------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 3344433444455566666666666655533211 011112245788888888888776 55557788888888
Q ss_pred cCCCcccc-cccccccCCcc--EEEcCCCCCCcccCCCCCCC--------------------------------------
Q 001020 621 PHSSVEKL-WGGAQQLVNLK--YMDLSHSKQLTEIPDLSLAS-------------------------------------- 659 (1187)
Q Consensus 621 ~~~~i~~l-~~~~~~l~~L~--~L~Ls~~~~l~~~p~l~~l~-------------------------------------- 659 (1187)
++|.+..+ +..+..+++|+ .|++++|.+....|......
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 88888776 34567777777 77888877665555432223
Q ss_pred --------------CccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccc
Q 001020 660 --------------NIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPE 724 (1187)
Q Consensus 660 --------------~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~ 724 (1187)
+|+.|++++|......+..++.+++|++|++++|. +..+|..+ ++++|++|++++|......|.
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchh
Confidence 44555555543333333447888899999998876 55777766 588999999998876554443
Q ss_pred ---cccccceEeecCcccc-ccchh-hhccCCCcEEeccCCCCCccc--ccccCCCCCCCEEeccCCCCCccCCcccCCc
Q 001020 725 ---IACTIEELFLDGTAIE-ELPLS-IECLSRLITLNLENCSRLECL--SSSLCKLKSLQHLNLFGCTKVERLPDEFGNL 797 (1187)
Q Consensus 725 ---~~~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l 797 (1187)
.+.+|+.|++++|.+. .+|.. +..+++|+.|++++|...... +..+..+++|++|++++|......|..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 3457889999998876 56554 788899999999988766544 6678888999999999887766677888888
Q ss_pred ccccEEEcccCcccccc--hhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC--c--ccccCCCC
Q 001020 798 EALMEMKAVRSSIRELP--SSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE--L--PNSLGQLS 871 (1187)
Q Consensus 798 ~~L~~L~l~~n~i~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~--l--~~~l~~l~ 871 (1187)
++|+.|++++|.+...+ ..+..+++|+.|++++|..... ....+.++++|+.|+|++|.+.. + +..+..++
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS---SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT---CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc---CHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 99999999998887553 3478888999999988876542 22336778889999999998875 2 24577888
Q ss_pred CCcEEECccCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCC---CCCCeeecccccccccccCCccccCCCCCCCCc
Q 001020 872 SLHILFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQSLPELP---CNISDMDANCCTSLKELSGLSILFTPTTWNSQG 947 (1187)
Q Consensus 872 ~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~lp~l~---~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~ 947 (1187)
+|+.|+|++|.++.+ |..+.++++|+.|+|++|+.....|+.. ++| .|++++|. ++.+....+ ...+.++.
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~---~~l~~L~~ 551 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSLL---PILSQQRT 551 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGGH---HHHHTSSE
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccCHhhc---ccCCCCCE
Confidence 999999999988876 5678888999999999875444444332 355 77777773 333321111 12345667
Q ss_pred eeeecCCC
Q 001020 948 LNFINCFN 955 (1187)
Q Consensus 948 L~~~~C~~ 955 (1187)
|++.+++-
T Consensus 552 L~l~~N~~ 559 (606)
T 3t6q_A 552 INLRQNPL 559 (606)
T ss_dssp EECTTCCE
T ss_pred EeCCCCCc
Confidence 77777653
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=311.30 Aligned_cols=400 Identities=19% Similarity=0.187 Sum_probs=271.9
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCC-cc-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPS-YI-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L 618 (1187)
.+|++.+....+.+.+|.++++|+.|++++|.+. ..+.+...-..+|++|++++|.+..+|. .+ .+.+|++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC------ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 3566666666677788899999999999877542 2222323334688999999998888774 34 78889999
Q ss_pred eCcCCCcccccc-cccccCCccEEEcCCCCCCc-ccCC-CCCCCCccEEecCCCCCcccccccccCCCcc----cEEEcc
Q 001020 619 EMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLT-EIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKL----AILSLR 691 (1187)
Q Consensus 619 ~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L----~~L~L~ 691 (1187)
++++|.+..++. .++.+++|++|+|++|.+.. .+|. ++++++|++|++++|......+..++.+.+| +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999998888875 57888899999999887665 3564 8888899999998876555555667777776 777777
Q ss_pred CccCCcccCccccccccceeeccccCC-----------------------------------------------------
Q 001020 692 HCKCIKSLPTSIHLESLKQLFLSGCSN----------------------------------------------------- 718 (1187)
Q Consensus 692 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~----------------------------------------------------- 718 (1187)
+|......|..+...+|+.|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 776444444444433555555554410
Q ss_pred -----CCcccc---cccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccc--------------------c
Q 001020 719 -----LNTFPE---IACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSS--------------------L 770 (1187)
Q Consensus 719 -----l~~~~~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--------------------l 770 (1187)
....|. .+.+|+.|++++|.++.+|..+..+ +|+.|++++|... .+|.. .
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc
Confidence 000111 1234556666666666666555555 5555555554432 22221 1
Q ss_pred CCCCCCCEEeccCCCCCccC--CcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCC
Q 001020 771 CKLKSLQHLNLFGCTKVERL--PDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLR 848 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 848 (1187)
..+++|++|++++|...... |..+..+++|++|++++|.+..++..+..+++|+.|++++|...... ....+.+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT--TSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc--chhhhhcCC
Confidence 45677777777776543221 45667778888888888888877777778888888888887654421 112477889
Q ss_pred CccEEeccCCCCCC-cccccCCCCCCcEEECccCCCc--cccccccCCCCCCEEeecCCCCCCcCCCC---CCCCCeeec
Q 001020 849 ILTNLNLSDCGITE-LPNSLGQLSSLHILFRDRNNFE--RIPTSIIHLTNLFLLKLSYCERLQSLPEL---PCNISDMDA 922 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~~-l~~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i 922 (1187)
+|+.|+|++|.+.. .|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|......|.. .++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 99999999998886 5667888999999999999987 58888999999999999997644433532 468999999
Q ss_pred ccccccccccCCccccCCCCCCCCceeeecCC
Q 001020 923 NCCTSLKELSGLSILFTPTTWNSQGLNFINCF 954 (1187)
Q Consensus 923 ~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~ 954 (1187)
++| .++.+....+ ...+.++.|++.+++
T Consensus 502 ~~n-~l~~~~~~~~---~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 502 ASN-QLKSVPDGIF---DRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSS-CCSCCCTTTT---TTCTTCCEEECCSSC
T ss_pred CCC-cCCCCCHHHh---hcccCCcEEEecCCc
Confidence 988 4555542111 234567778887754
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.9e-29 Score=308.42 Aligned_cols=394 Identities=20% Similarity=0.186 Sum_probs=288.9
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCc-c-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSY-I-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L 618 (1187)
.+|++.+....+.+.+|.++++|++|++++|.+. ..+.+......+|++|++++|.+..+|.. + .+++|++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 4566666666677888999999999999987653 22222223356899999999999998875 4 88999999
Q ss_pred eCcCCCcccc--cccccccCCccEEEcCCCCCCcccC--CCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCcc
Q 001020 619 EMPHSSVEKL--WGGAQQLVNLKYMDLSHSKQLTEIP--DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCK 694 (1187)
Q Consensus 619 ~L~~~~i~~l--~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~ 694 (1187)
++++|.+..+ |..+.++++|++|+|++|.....+| .+.++++|++|++++|......|..++.+++|++|++++|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 9999999854 6778999999999999998777776 48999999999999988777788889988889988888776
Q ss_pred CCcccCccc--cccccceeeccccCCCCc------ccccccccceEeecCccc---------------------------
Q 001020 695 CIKSLPTSI--HLESLKQLFLSGCSNLNT------FPEIACTIEELFLDGTAI--------------------------- 739 (1187)
Q Consensus 695 ~l~~lp~~~--~l~~L~~L~Ls~c~~l~~------~~~~~~~L~~L~L~~~~i--------------------------- 739 (1187)
...+|..+ .+++|++|++++|..... +.....+|+.|++++|.+
T Consensus 184 -~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 184 -SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp -STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred -ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 34444443 477888888887764331 111223344444433322
Q ss_pred -ccc------------------------------------chhhhccCCCcEEeccCCCCCccccccc-CCCCCCCEEec
Q 001020 740 -EEL------------------------------------PLSIECLSRLITLNLENCSRLECLSSSL-CKLKSLQHLNL 781 (1187)
Q Consensus 740 -~~l------------------------------------p~~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L 781 (1187)
..+ +......++|+.|++++|. +..+|..+ ..+++|++|++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEEC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEc
Confidence 211 1112234578888888865 45777666 47899999999
Q ss_pred cCCCCCccCC---cccCCcccccEEEcccCcccccch---hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEec
Q 001020 782 FGCTKVERLP---DEFGNLEALMEMKAVRSSIRELPS---SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNL 855 (1187)
Q Consensus 782 ~~~~~l~~lp---~~l~~l~~L~~L~l~~n~i~~lp~---~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L 855 (1187)
++|...+.+| ..++.+++|+.|++++|.++.++. .+..+++|+.|++++|..... ...+..+++|+.|+|
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----p~~~~~~~~L~~L~L 417 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM----PDSCQWPEKMRFLNL 417 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC----CSCCCCCTTCCEEEC
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC----ChhhcccccccEEEC
Confidence 9987766553 346788899999999999988763 578899999999999876531 223677889999999
Q ss_pred cCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCCC--CCCCCeeecccccccccccC
Q 001020 856 SDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPEL--PCNISDMDANCCTSLKELSG 933 (1187)
Q Consensus 856 s~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~l~~ 933 (1187)
++|.++.+|..+ +++|+.|+|++|+++.++ ..+++|+.|+|++| .++.+|.. .++|+.|++++| .++.+..
T Consensus 418 s~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 418 SSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp TTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCH
Confidence 999988877654 368999999999888765 57889999999986 67788853 578999999887 5555542
Q ss_pred CccccCCCCCCCCceeeecCCCC
Q 001020 934 LSILFTPTTWNSQGLNFINCFNL 956 (1187)
Q Consensus 934 ~~~~~~~~~~~l~~L~~~~C~~L 956 (1187)
..+ .....++.|++.+++-.
T Consensus 491 ~~~---~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 491 GIF---DRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TGG---GGCTTCCEEECCSSCBC
T ss_pred HHH---hcCcccCEEEecCCCcc
Confidence 211 22456778888887644
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.1e-28 Score=308.34 Aligned_cols=348 Identities=17% Similarity=0.153 Sum_probs=232.4
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCC-CCcc-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAM-PSYI-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L 618 (1187)
.++++.+....+.+.+|.++++|++|++++|.+. ........-..+|++|++++|.+..+ |..+ .+.+|++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccc------ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 4566677667778889999999999999987552 22222233356899999999999998 5556 89999999
Q ss_pred eCcCCCccccc-ccccccCCccEEEcCCCCCCc-ccCC-CCCCCCccEEecCCCCCcccccccccCCCccc----EEEcc
Q 001020 619 EMPHSSVEKLW-GGAQQLVNLKYMDLSHSKQLT-EIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLA----ILSLR 691 (1187)
Q Consensus 619 ~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~----~L~L~ 691 (1187)
++++|.+..++ ..++++++|++|+|++|.+.. .+|. ++++++|++|+|++|......+..++.+.+|+ +|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 99999999887 678999999999999998765 5565 99999999999999876655566677777665 89999
Q ss_pred CccCCcccCccccccccceeeccccCCCC---------------------------------------------------
Q 001020 692 HCKCIKSLPTSIHLESLKQLFLSGCSNLN--------------------------------------------------- 720 (1187)
Q Consensus 692 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~--------------------------------------------------- 720 (1187)
+|......+..+...+|+.|++++|....
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 98744333344455689999988875320
Q ss_pred -------ccc--ccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCC
Q 001020 721 -------TFP--EIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLP 791 (1187)
Q Consensus 721 -------~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 791 (1187)
..| ..+.+|+.|+++++.+..+| .+..+++|+.|++++|.. ..+| .+ .+++|++|++++|.....+
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 011 12346777788888887777 677777888888887766 6666 34 6777777777776544433
Q ss_pred cccCCcccccEEEcccCccccc---chhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc--cc
Q 001020 792 DEFGNLEALMEMKAVRSSIREL---PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP--NS 866 (1187)
Q Consensus 792 ~~l~~l~~L~~L~l~~n~i~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~--~~ 866 (1187)
.+..+++|++|++++|.++.+ |..+..+++|+.|++++|..... ...+.++++|+.|++++|.+..++ ..
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE----CCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc----hhhccCCCCCCeeECCCCccCCccChhh
Confidence 344566666666666665544 45555666666666665553321 123444555555555555544432 23
Q ss_pred cCCCCCCcEEECccCCCcc-ccccccCCCCCCEEeecCC
Q 001020 867 LGQLSSLHILFRDRNNFER-IPTSIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 867 l~~l~~L~~L~L~~n~l~~-lp~~l~~L~~L~~L~L~~c 904 (1187)
+..+++|+.|+|++|.+.. .|..+.++++|+.|++++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 4445555555555555543 2334445555555555544
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.2e-29 Score=317.07 Aligned_cols=326 Identities=16% Similarity=0.169 Sum_probs=227.4
Q ss_pred CCeeEEEecCCCCCC------------------CCCcc---cccccceEeCcCCCcc-cccccccccCCccEEEcCCCC-
Q 001020 591 SELKYFHWNGYPLKA------------------MPSYI---HQENLIALEMPHSSVE-KLWGGAQQLVNLKYMDLSHSK- 647 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~- 647 (1187)
++|++|++++|.+.. +|..+ ++++|++|+|++|.+. .+|..+.++++|++|+|++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 456666666666666 66654 3677777777777644 566677777777777777776
Q ss_pred CCc-ccCC-CCCC------CCccEEecCCCCCcccccc--cccCCCcccEEEccCccCCcccCccc-cccccceeecccc
Q 001020 648 QLT-EIPD-LSLA------SNIEKLNLDGCSSLLEIHP--SIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGC 716 (1187)
Q Consensus 648 ~l~-~~p~-l~~l------~~L~~L~L~~c~~l~~~~~--~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c 716 (1187)
+.. .+|. ++.+ ++|++|+|++|... .+|. .++.+++|++|++++|.....+| .+ ++++|++|++++|
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 443 4553 4443 77777777776543 6776 67777777777777766444666 34 5777777777776
Q ss_pred CCCCcccccc---cc-cceEeecCccccccchhhhccC--CCcEEeccCCCCCcccccccC-------CCCCCCEEeccC
Q 001020 717 SNLNTFPEIA---CT-IEELFLDGTAIEELPLSIECLS--RLITLNLENCSRLECLSSSLC-------KLKSLQHLNLFG 783 (1187)
Q Consensus 717 ~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~l~-------~l~~L~~L~L~~ 783 (1187)
... .+|..+ .+ |+.|++++|.++.+|..+..++ +|+.|++++|......|..+. .+++|++|+|++
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 543 555432 34 7777777787777777766544 788888888877777777776 677888888888
Q ss_pred CCCCccCCcc-cCCcccccEEEcccCcccccchhhhcC--------CCCCEEEccccCCCCcCCccCCC-CC--CCCCcc
Q 001020 784 CTKVERLPDE-FGNLEALMEMKAVRSSIRELPSSIVQL--------NNLYRLSFERYQGKSHMGLRLPT-MS--GLRILT 851 (1187)
Q Consensus 784 ~~~l~~lp~~-l~~l~~L~~L~l~~n~i~~lp~~l~~l--------~~L~~L~l~~~~~~~~~~~~l~~-l~--~l~~L~ 851 (1187)
|... .+|.. +..+++|+.|++++|.++.+|..+... ++|+.|++++|.... +|. +. .+++|+
T Consensus 443 N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 443 NQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLV 516 (636)
T ss_dssp SCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCC
T ss_pred CccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcC
Confidence 6544 55543 455788888888888888777654332 278888888877653 332 43 778888
Q ss_pred EEeccCCCCCCcccccCCCCCCcEEECcc------CCCc-cccccccCCCCCCEEeecCCCCCCcCCC-CCCCCCeeecc
Q 001020 852 NLNLSDCGITELPNSLGQLSSLHILFRDR------NNFE-RIPTSIIHLTNLFLLKLSYCERLQSLPE-LPCNISDMDAN 923 (1187)
Q Consensus 852 ~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~------n~l~-~lp~~l~~L~~L~~L~L~~c~~L~~lp~-l~~sL~~L~i~ 923 (1187)
.|+|++|.++.+|..+..+++|+.|+|++ |++. .+|..+.++++|+.|+|++|+. +.+|. ++++|+.|+++
T Consensus 517 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls 595 (636)
T 4eco_A 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIK 595 (636)
T ss_dssp EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECC
T ss_pred EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECc
Confidence 88888888888888888888888888843 4444 6777888888888888888654 77775 56788888888
Q ss_pred ccc
Q 001020 924 CCT 926 (1187)
Q Consensus 924 ~C~ 926 (1187)
+|+
T Consensus 596 ~N~ 598 (636)
T 4eco_A 596 DNP 598 (636)
T ss_dssp SCT
T ss_pred CCC
Confidence 885
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-28 Score=312.40 Aligned_cols=341 Identities=15% Similarity=0.156 Sum_probs=177.2
Q ss_pred ccccccCcccceEEEecCCCCCC--CCc-e---------eccCCcc-ccCCCeeEEEecCCC-CCCCCCcc-cccccceE
Q 001020 554 PQTFIKMHKLRFLKFYNSVDGEH--KNK-V---------HHFQGLD-YVFSELKYFHWNGYP-LKAMPSYI-HQENLIAL 618 (1187)
Q Consensus 554 ~~~f~~m~~Lr~L~l~~~~~~~~--~~~-~---------~~~~~l~-~l~~~Lr~L~l~~~~-l~~lp~~~-~~~~L~~L 618 (1187)
|..|.++++|+.|++++|.+... +.. . .+|..+. .-..+|++|++++|. ...+|..+ .+++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 45789999999999998765430 000 0 0233332 123456666666665 34455544 56666666
Q ss_pred eCcCCC-ccc--ccccccccC-------CccEEEcCCCCCCcccCC---CCCCCCccEEecCCCCCcccccccccCCCcc
Q 001020 619 EMPHSS-VEK--LWGGAQQLV-------NLKYMDLSHSKQLTEIPD---LSLASNIEKLNLDGCSSLLEIHPSIKYLNKL 685 (1187)
Q Consensus 619 ~L~~~~-i~~--l~~~~~~l~-------~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L 685 (1187)
+|++|+ +.. +|..+..++ +|+.|+|++|.+. .+|. ++++++|++|+|++|... .+| .++.+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 666665 553 555554444 6666666666655 4554 666666666666665433 555 66666666
Q ss_pred cEEEccCccCCcccCccc-cccc-cceeeccccCCCCcccccccccceEeecCccccccchhhhccCC--CcEEeccCCC
Q 001020 686 AILSLRHCKCIKSLPTSI-HLES-LKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSR--LITLNLENCS 761 (1187)
Q Consensus 686 ~~L~L~~c~~l~~lp~~~-~l~~-L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~ 761 (1187)
+.|+|++|... .+|..+ ++++ |+.|+|++|. ++.+|..+..++. |+.|+|++|.
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~---------------------L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK---------------------LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC---------------------CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCC---------------------CCcCchhhhccccCCCCEEECcCCc
Confidence 66666666533 555544 3555 6666666554 4444433333322 4444444444
Q ss_pred CCccccc---ccC--CCCCCCEEeccCCCCCccCCccc-CCcccccEEEcccCcccccchhhhcC--------CCCCEEE
Q 001020 762 RLECLSS---SLC--KLKSLQHLNLFGCTKVERLPDEF-GNLEALMEMKAVRSSIRELPSSIVQL--------NNLYRLS 827 (1187)
Q Consensus 762 ~l~~lp~---~l~--~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~l~~n~i~~lp~~l~~l--------~~L~~L~ 827 (1187)
....+|. .+. .+++|+.|+|++|... .+|..+ ..+++|+.|++++|.+..+|..+... ++|+.|+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence 3332221 111 2234445555444322 333332 24444555555555554444433221 1455555
Q ss_pred ccccCCCCcCCccCCC-CC--CCCCccEEeccCCCCCCcccccCCCCCCcEEECcc------CCCc-cccccccCCCCCC
Q 001020 828 FERYQGKSHMGLRLPT-MS--GLRILTNLNLSDCGITELPNSLGQLSSLHILFRDR------NNFE-RIPTSIIHLTNLF 897 (1187)
Q Consensus 828 l~~~~~~~~~~~~l~~-l~--~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~------n~l~-~lp~~l~~L~~L~ 897 (1187)
|++|.... +|. +. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |++. .+|..+.++++|+
T Consensus 735 Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 735 LRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp CCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 55544331 121 22 45555555555555555555555555555555544 3332 4555555666666
Q ss_pred EEeecCCCCCCcCCC-CCCCCCeeeccccc
Q 001020 898 LLKLSYCERLQSLPE-LPCNISDMDANCCT 926 (1187)
Q Consensus 898 ~L~L~~c~~L~~lp~-l~~sL~~L~i~~C~ 926 (1187)
.|+|++|+. ..+|. ++++|+.|++++|+
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp EEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred EEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 666665433 55553 44556666666654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=301.32 Aligned_cols=369 Identities=14% Similarity=0.163 Sum_probs=278.4
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeC
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEM 620 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L 620 (1187)
.+|++.+....+.+.+|.++++|++|++++|.+... .+..+ .-..+|++|++++|.+..+|.. .+++|++|+|
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~-~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-----DISVF-KFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-----EGGGG-TTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCc-----ChHHh-hcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 356666666667778899999999999998765321 12222 2346899999999999999888 8899999999
Q ss_pred cCCCccc--ccccccccCCccEEEcCCCCCCcccCCCCCCCCc--cEEecCCCCC--cccccccccC-------------
Q 001020 621 PHSSVEK--LWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNI--EKLNLDGCSS--LLEIHPSIKY------------- 681 (1187)
Q Consensus 621 ~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--l~~~~~~i~~------------- 681 (1187)
++|.+.. +|..++.+++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 9999986 46788999999999999987654 346667777 8888888765 3444444433
Q ss_pred -------------CCcccEEEccCcc-------CCcccC---------------------------ccccccccceeecc
Q 001020 682 -------------LNKLAILSLRHCK-------CIKSLP---------------------------TSIHLESLKQLFLS 714 (1187)
Q Consensus 682 -------------L~~L~~L~L~~c~-------~l~~lp---------------------------~~~~l~~L~~L~Ls 714 (1187)
+++|+.|++++|. ....+| .....++|++|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 5566666666653 011111 01113478888888
Q ss_pred ccCCCCcccccc--------cccceEeecCccccccc-hhhhcc---CCCcEEeccCCCCCcccccccCCCCCCCEEecc
Q 001020 715 GCSNLNTFPEIA--------CTIEELFLDGTAIEELP-LSIECL---SRLITLNLENCSRLECLSSSLCKLKSLQHLNLF 782 (1187)
Q Consensus 715 ~c~~l~~~~~~~--------~~L~~L~L~~~~i~~lp-~~i~~l---~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 782 (1187)
+|.....+|..+ .+|+.+++++|.+ .+| ..+..+ .+|+.|++++|..... + ....+++|++|+++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECC
T ss_pred cccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeE
Confidence 887655666543 4677889999999 888 556655 7899999999875432 2 12689999999999
Q ss_pred CCCCCccCCcccCCcccccEEEcccCcccc---cchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCC
Q 001020 783 GCTKVERLPDEFGNLEALMEMKAVRSSIRE---LPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCG 859 (1187)
Q Consensus 783 ~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~ 859 (1187)
+|.....+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|...... ....+..+++|+.|+|++|.
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l--~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE--KKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG--GGCSCCCCTTCCEEECCSSC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc--ccchhccCccCCEEECcCCC
Confidence 998888789999999999999999999995 4567899999999999999876521 11236788999999999999
Q ss_pred CCC-cccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCCC----CCCCCeeeccccc
Q 001020 860 ITE-LPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPEL----PCNISDMDANCCT 926 (1187)
Q Consensus 860 l~~-l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l----~~sL~~L~i~~C~ 926 (1187)
++. +|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|++++++
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 975 555443 7999999999999999998889999999999996 57778752 3467777776653
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=5e-28 Score=312.82 Aligned_cols=290 Identities=16% Similarity=0.128 Sum_probs=213.3
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCC-CCcc-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAM-PSYI-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L 618 (1187)
.+|++.+....+.+..|.++++|++|++++|.. ..........-..+|++|++++|.+..+ |..+ .+.+|++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 456666666677788999999999999987632 1222222223346899999999999887 5555 78999999
Q ss_pred eCcCCCccc-cccc--ccccCCccEEEcCCCCCCcccC--CCCCCCCccEEecCCCCCcccccccccCC--CcccEEEcc
Q 001020 619 EMPHSSVEK-LWGG--AQQLVNLKYMDLSHSKQLTEIP--DLSLASNIEKLNLDGCSSLLEIHPSIKYL--NKLAILSLR 691 (1187)
Q Consensus 619 ~L~~~~i~~-l~~~--~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~~~~i~~L--~~L~~L~L~ 691 (1187)
+|++|.+.. ++.. +.++++|++|+|++|.+....+ .++++++|++|+|++|......+..++.+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 999999886 4544 7899999999999998776654 38899999999999987666666677766 788888888
Q ss_pred CccCCcccCccc-ccc------ccceeeccccCCCCccccc---------------------------------------
Q 001020 692 HCKCIKSLPTSI-HLE------SLKQLFLSGCSNLNTFPEI--------------------------------------- 725 (1187)
Q Consensus 692 ~c~~l~~lp~~~-~l~------~L~~L~Ls~c~~l~~~~~~--------------------------------------- 725 (1187)
+|......|..+ .+. +|+.|++++|......+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 877655555433 233 3888888877432211110
Q ss_pred --ccccceEeecCcccccc-chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccE
Q 001020 726 --ACTIEELFLDGTAIEEL-PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALME 802 (1187)
Q Consensus 726 --~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 802 (1187)
..+|+.|++++|.+..+ |..+..+++|+.|+|++|......|..+..+++|++|+|++|......|..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 14677888888888765 445778888888888888777777777888888888888887665666777888888888
Q ss_pred EEcccCcccccch-hhhcCCCCCEEEccccCCCC
Q 001020 803 MKAVRSSIRELPS-SIVQLNNLYRLSFERYQGKS 835 (1187)
Q Consensus 803 L~l~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~ 835 (1187)
|++++|.+..++. .+..+++|+.|++++|....
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 8888888887765 46778888888888776543
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=300.31 Aligned_cols=371 Identities=19% Similarity=0.188 Sum_probs=267.0
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCc--ccccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSY--IHQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~--~~~~~L~~L 618 (1187)
.+|++.+....+.+.+|.++++|++|++++|.+. ..+........+|++|++++|.+..+|.. ..+.+|++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCC------ccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 3556666566677888999999999999877542 22222233356788888888888888762 378888888
Q ss_pred eCcCCCccc--ccccccccCCccEEEcCCCCCCcccCC-CCCCCCc----cEEecCCCCCcccc----------------
Q 001020 619 EMPHSSVEK--LWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNI----EKLNLDGCSSLLEI---------------- 675 (1187)
Q Consensus 619 ~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L----~~L~L~~c~~l~~~---------------- 675 (1187)
++++|.+.. +|..+.++++|++|++++|.+....|. ++.+++| +.|++++|......
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 888888885 678888888888888888876554442 5555555 56666655322222
Q ss_pred -----------------------------------------------------------------cccccCCCcccEEEc
Q 001020 676 -----------------------------------------------------------------HPSIKYLNKLAILSL 690 (1187)
Q Consensus 676 -----------------------------------------------------------------~~~i~~L~~L~~L~L 690 (1187)
+..++.+++|+.|++
T Consensus 210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 289 (570)
T 2z63_A 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289 (570)
T ss_dssp CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence 223344555556666
Q ss_pred cCccCCcccCccc-cccccceeeccccCCCCccc-ccccccceEeecCccccccchhhhccCCCcEEeccCCCCCccc--
Q 001020 691 RHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFP-EIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECL-- 766 (1187)
Q Consensus 691 ~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-- 766 (1187)
++|. +..+|..+ .+ +|++|++++|... .+| ..+.+|+.|++++|.+...... ..+++|+.|++++|......
T Consensus 290 ~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 290 VSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp ESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE
T ss_pred cCcc-chhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccc
Confidence 5554 33455444 24 6666666665543 333 2345666667666665543332 67889999999988765432
Q ss_pred ccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch--hhhcCCCCCEEEccccCCCCcCCccCCCC
Q 001020 767 SSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS--SIVQLNNLYRLSFERYQGKSHMGLRLPTM 844 (1187)
Q Consensus 767 p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 844 (1187)
|..+..+++|++|++++|.. ..+|..+..+++|+.|++++|.+...+. .+..+++|+.|++++|..... ....+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~ 441 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIF 441 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC---CTTTT
T ss_pred cccccccCccCEEECCCCcc-ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc---chhhh
Confidence 67788999999999999764 4455558999999999999999987654 688999999999999976543 22347
Q ss_pred CCCCCccEEeccCCCCC--CcccccCCCCCCcEEECccCCCccc-cccccCCCCCCEEeecCCCCCCcCCC-C---CCCC
Q 001020 845 SGLRILTNLNLSDCGIT--ELPNSLGQLSSLHILFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQSLPE-L---PCNI 917 (1187)
Q Consensus 845 ~~l~~L~~L~Ls~~~l~--~l~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~lp~-l---~~sL 917 (1187)
.++++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+ |..+.++++|+.|+|++| .++.+|. . .++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCC
Confidence 88999999999999997 4889999999999999999999977 778999999999999997 4555552 2 3567
Q ss_pred Ceeeccccc
Q 001020 918 SDMDANCCT 926 (1187)
Q Consensus 918 ~~L~i~~C~ 926 (1187)
+.|++++++
T Consensus 521 ~~L~l~~N~ 529 (570)
T 2z63_A 521 QKIWLHTNP 529 (570)
T ss_dssp CEEECCSSC
T ss_pred cEEEecCCc
Confidence 777776653
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.1e-27 Score=295.57 Aligned_cols=375 Identities=17% Similarity=0.169 Sum_probs=288.2
Q ss_pred cccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCC-cc-cccccceEeCcCCCccccccc-ccccCC
Q 001020 561 HKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPS-YI-HQENLIALEMPHSSVEKLWGG-AQQLVN 637 (1187)
Q Consensus 561 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~~-~~~l~~ 637 (1187)
++|+.|++++|.+... .+..+ ....+|++|++++|.+..++. .+ .+++|++|+|++|.+..++.. +..+++
T Consensus 26 ~~L~~L~Ls~n~l~~~-----~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI-----GHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCEE-----CSSTT-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccCcc-----Chhhh-hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 6899999998765321 11222 334689999999999998874 34 889999999999999998766 899999
Q ss_pred ccEEEcCCCCCCc-ccC-CCCCCCCccEEecCCCCCccccc-ccccCCCcccEEEccCccCCcccCccc-cccccceeec
Q 001020 638 LKYMDLSHSKQLT-EIP-DLSLASNIEKLNLDGCSSLLEIH-PSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFL 713 (1187)
Q Consensus 638 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~c~~l~~~~-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 713 (1187)
|++|+|++|.+.. ..| .+.++++|++|++++|..+..+| ..++.+++|++|++++|......|..+ .+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9999999998765 334 59999999999999998777776 579999999999999998776677777 5999999999
Q ss_pred cccCCCCcccc----cccccceEeecCccccccc---hh-hhccC----------------------------CCcEEec
Q 001020 714 SGCSNLNTFPE----IACTIEELFLDGTAIEELP---LS-IECLS----------------------------RLITLNL 757 (1187)
Q Consensus 714 s~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp---~~-i~~l~----------------------------~L~~L~L 757 (1187)
++|.. ..+|. .+.+|++|++++|.+..++ .. ...++ +|+.|++
T Consensus 180 ~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 180 HLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp ECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred ccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 98864 33443 3578999999999998763 11 12234 4444444
Q ss_pred cCCCCCcc--c---------------------------------ccccCCCCCCCEEeccCCCCCccCCccc-CCccccc
Q 001020 758 ENCSRLEC--L---------------------------------SSSLCKLKSLQHLNLFGCTKVERLPDEF-GNLEALM 801 (1187)
Q Consensus 758 ~~~~~l~~--l---------------------------------p~~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~ 801 (1187)
++|..... + +..+..+++|+.|++++|. +..+|..+ ..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCcccc
Confidence 44432110 0 0001123579999999975 56788776 5799999
Q ss_pred EEEcccCcccc-cc---hhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEE
Q 001020 802 EMKAVRSSIRE-LP---SSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILF 877 (1187)
Q Consensus 802 ~L~l~~n~i~~-lp---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~ 877 (1187)
.|++++|.+.. +| ..+..+++|+.|++++|....... ....+..+++|+.|+|++|+++.+|..+..+++|+.|+
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH-HHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEE
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCccccccc-chhhhhcCCCCCEEECCCCCCccCChhhcccccccEEE
Confidence 99999999985 33 346789999999999998654210 00126788999999999999999999999999999999
Q ss_pred CccCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCCeeecccccccccccCCccccCCCCCCCCceeeecC
Q 001020 878 RDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPELPCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINC 953 (1187)
Q Consensus 878 L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C 953 (1187)
|++|.++.+|..+ .++|+.|+|++| .++.++.-.++|+.|++++| .++.++... ..+.++.|++.+|
T Consensus 417 Ls~N~l~~l~~~~--~~~L~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~-----~l~~L~~L~Ls~N 483 (549)
T 2z81_A 417 LSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN-KLKTLPDAS-----LFPVLLVMKISRN 483 (549)
T ss_dssp CTTSCCSCCCTTS--CTTCSEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCGG-----GCTTCCEEECCSS
T ss_pred CCCCCcccccchh--cCCceEEECCCC-ChhhhcccCChhcEEECCCC-ccCcCCCcc-----cCccCCEEecCCC
Confidence 9999999988765 369999999997 57777766779999999999 677766421 2356778888876
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.7e-27 Score=296.14 Aligned_cols=357 Identities=21% Similarity=0.169 Sum_probs=245.9
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCc-c-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSY-I-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L 618 (1187)
.++++.+....+.+.+|.++++|++|+++++.+.. ...+...-..+|++|++++|.+..+|.. | .+.+|++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 35566666666778889999999999999875532 2222223346899999999999999974 4 88999999
Q ss_pred eCcCCCccccc-ccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccc--cCCCcccEEEccCcc
Q 001020 619 EMPHSSVEKLW-GGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSI--KYLNKLAILSLRHCK 694 (1187)
Q Consensus 619 ~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i--~~L~~L~~L~L~~c~ 694 (1187)
++++|.+..++ ..+.++++|++|+|++|.+....|. +.++++|++|++++|......+..+ ..+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99999999887 5689999999999999988777665 8899999999999976544444444 356899999999986
Q ss_pred CCcccCccc-cc---------------------------cccceeeccccCCCCcccccc-----cccceEeecCccccc
Q 001020 695 CIKSLPTSI-HL---------------------------ESLKQLFLSGCSNLNTFPEIA-----CTIEELFLDGTAIEE 741 (1187)
Q Consensus 695 ~l~~lp~~~-~l---------------------------~~L~~L~Ls~c~~l~~~~~~~-----~~L~~L~L~~~~i~~ 741 (1187)
.....|..+ .+ ++|+.|++++|......|..+ .+|+.|++++|.++.
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 544444333 22 456777777776554444433 248999999999987
Q ss_pred cc-hhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCc-----cCCc----ccCCcccccEEEcccCccc
Q 001020 742 LP-LSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVE-----RLPD----EFGNLEALMEMKAVRSSIR 811 (1187)
Q Consensus 742 lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-----~lp~----~l~~l~~L~~L~l~~n~i~ 811 (1187)
++ ..++.+++|+.|+|++|......|..+..+++|+.|++++|.... .+|. .+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 75 568899999999999998887788888999999999998764322 3443 6778899999999999988
Q ss_pred ccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCC--CCCccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCc-cc
Q 001020 812 ELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSG--LRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFE-RI 886 (1187)
Q Consensus 812 ~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~-~l 886 (1187)
.++. .+..+++|+.|++++|...... .....+.. .++|+.|++++|+++.+ |..+..+++|+.|+|++|.+. .+
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~-l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRT-LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCE-ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCChhHhccccCCcEEECCCCchhhhh-cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 7654 5788889999998877521100 00000111 12444444444444442 233444444444444444443 23
Q ss_pred c-ccccCCCCCCEEeecCC
Q 001020 887 P-TSIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 887 p-~~l~~L~~L~~L~L~~c 904 (1187)
| ..+.++++|+.|++++|
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CSGGGTTCTTCCEEECCSC
T ss_pred CcccccCcccccEEecCCC
Confidence 3 23444444444444443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=291.09 Aligned_cols=389 Identities=15% Similarity=0.128 Sum_probs=277.7
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCC-CCcc-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAM-PSYI-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L 618 (1187)
.+|++.+....++...+ ++|+.|++++|.+.... .....-..+|++|++++|.+..+ |..+ .+++|++|
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELW------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCC------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred eEecCCCCccccccccc---ccccEEECCCCcccccC------hhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 35566555555554443 78999999987653221 11112245799999999999887 4455 78999999
Q ss_pred eCcCCCcccccccccccCCccEEEcCCCCCCc-ccC-CCCCCCCccEEecCCCCCcccccccccCCCcc--cEEEccCcc
Q 001020 619 EMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLT-EIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKL--AILSLRHCK 694 (1187)
Q Consensus 619 ~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L--~~L~L~~c~ 694 (1187)
+|++|++..+|.. .+++|++|+|++|.+.. .+| .++++++|++|+|++|.... ..+..+++| +.|++++|.
T Consensus 75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp ECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred ecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 9999999999887 79999999999998766 455 48899999999999876433 356677777 999999887
Q ss_pred C--CcccCccc---------------------------cccccceeeccccCC-------CCcccc--c-----------
Q 001020 695 C--IKSLPTSI---------------------------HLESLKQLFLSGCSN-------LNTFPE--I----------- 725 (1187)
Q Consensus 695 ~--l~~lp~~~---------------------------~l~~L~~L~Ls~c~~-------l~~~~~--~----------- 725 (1187)
. ....|..+ ++++|+.|++++|.. ...+|. .
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 5 33333322 256777777777641 000000 0
Q ss_pred ----------------ccccceEeecCcccc-ccchhh-----hccCCCcEEeccCCCCCcccc-cccCCC---CCCCEE
Q 001020 726 ----------------ACTIEELFLDGTAIE-ELPLSI-----ECLSRLITLNLENCSRLECLS-SSLCKL---KSLQHL 779 (1187)
Q Consensus 726 ----------------~~~L~~L~L~~~~i~-~lp~~i-----~~l~~L~~L~L~~~~~l~~lp-~~l~~l---~~L~~L 779 (1187)
..+|+.|++++|.+. .+|..+ +.+++|+.+++++|.. .+| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 125666666666666 666666 6677777777776655 444 333333 567777
Q ss_pred eccCCCCCccCCcccCCcccccEEEcccCcccc-cchhhhcCCCCCEEEccccCCCCcCCccCC-CCCCCCCccEEeccC
Q 001020 780 NLFGCTKVERLPDEFGNLEALMEMKAVRSSIRE-LPSSIVQLNNLYRLSFERYQGKSHMGLRLP-TMSGLRILTNLNLSD 857 (1187)
Q Consensus 780 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~ 857 (1187)
++++|.... .+ ....+++|++|++++|.++. +|..+..+++|+.|++++|...... .+| .+..+++|+.|+|++
T Consensus 308 ~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 308 TVSGTRMVH-ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECCS
T ss_pred EcCCCcccc-cc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc--cchHHHhhCCCCCEEECCC
Confidence 777765432 21 12688999999999999996 7888999999999999999876420 122 277899999999999
Q ss_pred CCCCC-cccc-cCCCCCCcEEECccCCCc-cccccccCCCCCCEEeecCCCCCCcCCC---CCCCCCeeecccccccccc
Q 001020 858 CGITE-LPNS-LGQLSSLHILFRDRNNFE-RIPTSIIHLTNLFLLKLSYCERLQSLPE---LPCNISDMDANCCTSLKEL 931 (1187)
Q Consensus 858 ~~l~~-l~~~-l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l 931 (1187)
|.+.. +|.. +..+++|+.|+|++|.++ .+|..+. ++|+.|+|++| .+..+|. -.++|+.|++++| .++.+
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCcc
Confidence 99998 8865 788999999999999996 5555543 79999999997 5778885 2579999999998 56766
Q ss_pred cCCccccCCCCCCCCceeeecCCCC
Q 001020 932 SGLSILFTPTTWNSQGLNFINCFNL 956 (1187)
Q Consensus 932 ~~~~~~~~~~~~~l~~L~~~~C~~L 956 (1187)
+.. .....+.++.|++.+++--
T Consensus 460 ~~~---~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 460 PDG---IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTT---TTTTCTTCCEEECCSSCBC
T ss_pred CHH---HhccCCcccEEECcCCCCc
Confidence 632 1233567888988887643
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.6e-27 Score=296.19 Aligned_cols=270 Identities=21% Similarity=0.214 Sum_probs=186.2
Q ss_pred ccCCCcccEEEccCccCCcccCccc-cccccceeeccccCC-CCccccc------ccccceEeecCcccccc-chhhhcc
Q 001020 679 IKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSN-LNTFPEI------ACTIEELFLDGTAIEEL-PLSIECL 749 (1187)
Q Consensus 679 i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~-l~~~~~~------~~~L~~L~L~~~~i~~l-p~~i~~l 749 (1187)
++.+++|++|++++|......+..+ ++++|++|++++|.. +..++.. ..+|+.|++++|.+..+ |..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 3344444444444444332223323 355566666655532 1222211 13577777777777765 4567788
Q ss_pred CCCcEEeccCCCCCcccc-cccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc---ccchhhhcCCCCCE
Q 001020 750 SRLITLNLENCSRLECLS-SSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR---ELPSSIVQLNNLYR 825 (1187)
Q Consensus 750 ~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~---~lp~~l~~l~~L~~ 825 (1187)
++|+.|+|++|.....+| ..+..+++|++|++++|......+..+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 888888888887766555 56788888888888888766666677888888888888888775 56778889999999
Q ss_pred EEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc---------ccCCCCCCcEEECccCCCccccc-cccCCCC
Q 001020 826 LSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN---------SLGQLSSLHILFRDRNNFERIPT-SIIHLTN 895 (1187)
Q Consensus 826 L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~---------~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~ 895 (1187)
|++++|..... ....+.++++|+.|+|++|.++.++. .+..+++|+.|+|++|+++.+|. .+.++++
T Consensus 485 L~Ls~N~l~~i---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 485 LDLSNNNIANI---NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp EECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred EECCCCCCCcC---ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 99999876542 22237888999999999999886532 26788999999999999999987 5789999
Q ss_pred CCEEeecCCCCCCcCCCC----CCCCCeeecccccccccccCCccccCCCCCCCCceeeecCCC
Q 001020 896 LFLLKLSYCERLQSLPEL----PCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINCFN 955 (1187)
Q Consensus 896 L~~L~L~~c~~L~~lp~l----~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~~ 955 (1187)
|+.|+|++| .++.+|.. .++|+.|+++++ .|+.+....+. +..+.++.|++.+++-
T Consensus 562 L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~--~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 562 LKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFG--PAFRNLTELDMRFNPF 621 (680)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHH--HHHTTCSEEECTTCCC
T ss_pred cceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhc--ccccccCEEEccCCCc
Confidence 999999874 67777742 368999999988 55555421110 0234667787777654
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.9e-27 Score=282.23 Aligned_cols=339 Identities=20% Similarity=0.269 Sum_probs=233.7
Q ss_pred cCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCc
Q 001020 559 KMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNL 638 (1187)
Q Consensus 559 ~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L 638 (1187)
.+.+|+.|++.++.+.. .+++.. ..+|++|++++|.+..+|....+++|++|++++|.+..++. +..+++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-------l~~~~~-l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-------IDGVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCCC-------CTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred HhccccEEecCCCCCcc-------Ccchhh-hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence 46678888887654322 223332 45788888888888888774477888888888888887776 7788888
Q ss_pred cEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCC
Q 001020 639 KYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSN 718 (1187)
Q Consensus 639 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~ 718 (1187)
++|+|++|.+.. ++.+..+++|++|++++|. +..++ .++.+++|+.|++++ .+..++...++++|++|++++|..
T Consensus 115 ~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 115 TGLTLFNNQITD-IDPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CEEECCSSCCCC-CGGGTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCC-ChHHcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCcC
Confidence 888888886443 4447888888888888864 44444 477888888888853 234444434678888888887763
Q ss_pred CCcccc--cccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCC
Q 001020 719 LNTFPE--IACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGN 796 (1187)
Q Consensus 719 l~~~~~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~ 796 (1187)
..++. .+.+|+.|++++|.+..++. ++.+++|+.|++++|... .++ .+..+++|+.|++++|..... +. +..
T Consensus 190 -~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~-~~-~~~ 263 (466)
T 1o6v_A 190 -SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNL-AP-LSG 263 (466)
T ss_dssp -CCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCC-GG-GTT
T ss_pred -CCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccc-hh-hhc
Confidence 33332 34567788888888777665 677788888888876543 333 467778888888887654433 22 677
Q ss_pred cccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEE
Q 001020 797 LEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHIL 876 (1187)
Q Consensus 797 l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L 876 (1187)
+++|+.|++++|.+..++. +..+++|+.|++++|.... ++.+..+++|+.|+|++|.++.++. +..+++|+.|
T Consensus 264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-----ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-----CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-----chhhcCCCCCCEEECcCCcCCCchh-hccCccCCEe
Confidence 7888888888888877766 7777888888887776544 2336677788888888888777654 6677888888
Q ss_pred ECccCCCccccccccCCCCCCEEeecCCCCCCcCC-CCCCCCCeeecccc
Q 001020 877 FRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLP-ELPCNISDMDANCC 925 (1187)
Q Consensus 877 ~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp-~l~~sL~~L~i~~C 925 (1187)
++++|.++.++ .+.++++|+.|++++|+.....| .-.++|+.|++.+|
T Consensus 337 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 337 FFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp ECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred ECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 88888777764 57778888888888765332222 11245556665555
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.6e-28 Score=297.33 Aligned_cols=369 Identities=15% Similarity=0.133 Sum_probs=259.8
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeC
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEM 620 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L 620 (1187)
.++++.+....+.+.+|.++++|+.|++++|.+. ....+...-..+|++|++++|.+..+|.. .+++|++|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDL 128 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEEC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEEC
Confidence 4566666666777888999999999999887553 22222223346899999999999999988 8899999999
Q ss_pred cCCCccccc--ccccccCCccEEEcCCCCCCcccCCCCCCCCc--cEEecCCCCC--cccccccccC-------------
Q 001020 621 PHSSVEKLW--GGAQQLVNLKYMDLSHSKQLTEIPDLSLASNI--EKLNLDGCSS--LLEIHPSIKY------------- 681 (1187)
Q Consensus 621 ~~~~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--l~~~~~~i~~------------- 681 (1187)
++|.+..++ ..+.++++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 999998865 678899999999999987654 345556666 9999988765 3444444433
Q ss_pred -------------CCcccEEEccCccC----C----------------------------cccCccccccccceeecccc
Q 001020 682 -------------LNKLAILSLRHCKC----I----------------------------KSLPTSIHLESLKQLFLSGC 716 (1187)
Q Consensus 682 -------------L~~L~~L~L~~c~~----l----------------------------~~lp~~~~l~~L~~L~Ls~c 716 (1187)
+++|+.|++++|.. + ..++......+|++|++++|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 44555565555420 0 00001111225555666555
Q ss_pred CCCCcccccc-----cccceEeecC---ccccccc-hhhhc---cCCCcEEeccCCCCCcccccccCCCCCCCEEeccCC
Q 001020 717 SNLNTFPEIA-----CTIEELFLDG---TAIEELP-LSIEC---LSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGC 784 (1187)
Q Consensus 717 ~~l~~~~~~~-----~~L~~L~L~~---~~i~~lp-~~i~~---l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 784 (1187)
.....+|... .+|+.|.+.+ +.+ .+| ..+.. ..+|+.|++++|...... ....+++|++|++++|
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred Eeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCC
Confidence 5444444433 4444333333 333 333 12222 256888888887653221 1268899999999999
Q ss_pred CCCccCCcccCCcccccEEEcccCcccccc---hhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCC
Q 001020 785 TKVERLPDEFGNLEALMEMKAVRSSIRELP---SSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGIT 861 (1187)
Q Consensus 785 ~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 861 (1187)
......|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|...... ....+..+++|+.|+|++|.++
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA--YDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC--SSCCCCCCTTCCEEECCSSCCC
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc--ChhhhcCcccCCEEECCCCCCC
Confidence 888878999999999999999999999765 46889999999999999876521 1223778899999999999997
Q ss_pred C-cccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCCC----CCCCCeeeccccc
Q 001020 862 E-LPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPEL----PCNISDMDANCCT 926 (1187)
Q Consensus 862 ~-l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l----~~sL~~L~i~~C~ 926 (1187)
. +|..+. ++|+.|+|++|+++.+|..+.++++|+.|+|++| .++.+|.. .++|+.|++++++
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 5 444433 7999999999999999998889999999999985 57777752 3466666666653
No 28
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=4.4e-30 Score=257.22 Aligned_cols=118 Identities=19% Similarity=0.381 Sum_probs=111.7
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHhhCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEI 94 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el 94 (1187)
+.++|||||||+|+| |++|++||+++|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||++|+
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 679999999999999 66899999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCceEEeEEEEeccccccccccchhhHHHHH
Q 001020 95 VKILECKNDKNIGQIVVPVFYRVDPSDVRNQTGIFGDGFLKL 136 (1187)
Q Consensus 95 ~~~~~~~~~~~~~~~v~pvfy~vdp~~vr~q~g~~~~~~~~~ 136 (1187)
.+|++|.. ..+++|+||||+|+|++||+|.|.|+++|+..
T Consensus 96 ~~~~~~~~--~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 96 DGLFQLES--SGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHTCCCT--TSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHh--cCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 99999987 77889999999999999999999999987643
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=300.23 Aligned_cols=353 Identities=16% Similarity=0.121 Sum_probs=265.9
Q ss_pred cCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCC-CCCC-CCcc-cccccceEeCcCCCcccc-cccccc
Q 001020 559 KMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYP-LKAM-PSYI-HQENLIALEMPHSSVEKL-WGGAQQ 634 (1187)
Q Consensus 559 ~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~~~~L~~L~L~~~~i~~l-~~~~~~ 634 (1187)
-.++|+.|++++|.+.. ..+..+ .-..+|++|++++|. +..+ |..| ++++|++|+|++|.+..+ |..+.+
T Consensus 22 lp~~l~~LdLs~N~i~~-----i~~~~~-~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-----VTASSF-PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCE-----ECSSSC-SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCcCCc-----cChhHC-cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 34789999999886532 112223 334689999999994 4556 5555 889999999999999987 778999
Q ss_pred cCCccEEEcCCCCCCcccCC---CCCCCCccEEecCCCCCccccc-ccccCCCcccEEEccCccCCcccCccc-cc--cc
Q 001020 635 LVNLKYMDLSHSKQLTEIPD---LSLASNIEKLNLDGCSSLLEIH-PSIKYLNKLAILSLRHCKCIKSLPTSI-HL--ES 707 (1187)
Q Consensus 635 l~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~~-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l--~~ 707 (1187)
+++|++|+|++|.+...+|. +.++++|++|+|++|......+ ..++++++|++|+|++|......+..+ .+ ++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999999999988775553 8999999999999987655444 579999999999999988666666666 34 89
Q ss_pred cceeeccccCCCCccccccc---------ccceEeecCcccc-ccchhhh------------------------------
Q 001020 708 LKQLFLSGCSNLNTFPEIAC---------TIEELFLDGTAIE-ELPLSIE------------------------------ 747 (1187)
Q Consensus 708 L~~L~Ls~c~~l~~~~~~~~---------~L~~L~L~~~~i~-~lp~~i~------------------------------ 747 (1187)
|+.|++++|......|..+. .|+.|++++|.+. .++..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 99999999987766554322 3899999998665 2222211
Q ss_pred ------c--cCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc-chhhh
Q 001020 748 ------C--LSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-PSSIV 818 (1187)
Q Consensus 748 ------~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l~ 818 (1187)
. .++|+.|+|++|......|..+..+++|+.|+|++|......|..+..+++|++|++++|.++.+ |..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 1 26899999999988777788899999999999999887777788899999999999999999877 56889
Q ss_pred cCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccccc---------
Q 001020 819 QLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTS--------- 889 (1187)
Q Consensus 819 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~--------- 889 (1187)
.+++|+.|++++|..... ....+.++++|+.|+|++|.++.++. +++|+.|++++|+++.+|..
T Consensus 336 ~l~~L~~L~L~~N~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAII---QDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp SCTTCCEEECCSCCCCCC---CSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred CCCCCCEEECCCCCCCcc---ChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeec
Confidence 999999999999876442 22237788889999999988876543 45555555555555544432
Q ss_pred -------------ccCCCCCCEEeecCCCCCCcCC-----CCCCCCCeeecccc
Q 001020 890 -------------IIHLTNLFLLKLSYCERLQSLP-----ELPCNISDMDANCC 925 (1187)
Q Consensus 890 -------------l~~L~~L~~L~L~~c~~L~~lp-----~l~~sL~~L~i~~C 925 (1187)
+.++++|+.|+|++|+ +..++ ..+++|+.|+++++
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCC
Confidence 3467777788877754 33222 22356666666554
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.9e-27 Score=284.37 Aligned_cols=331 Identities=18% Similarity=0.173 Sum_probs=164.6
Q ss_pred CCeeEEEecCCCCCCC-CCcc-cccccceEeCcCCCcc-cc-cccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEe
Q 001020 591 SELKYFHWNGYPLKAM-PSYI-HQENLIALEMPHSSVE-KL-WGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLN 665 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 665 (1187)
.+|++|++++|.+..+ |..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|.+....|. +.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4555555555555554 2223 4555556666555554 33 23455555666666665555444443 55555666666
Q ss_pred cCCCCCccccccc--ccCCCcccEEEccCccCCcccCcc-c-cccccceeeccccCCCCcccccc-----cccceEeecC
Q 001020 666 LDGCSSLLEIHPS--IKYLNKLAILSLRHCKCIKSLPTS-I-HLESLKQLFLSGCSNLNTFPEIA-----CTIEELFLDG 736 (1187)
Q Consensus 666 L~~c~~l~~~~~~--i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~~~~~~-----~~L~~L~L~~ 736 (1187)
|++|......+.. ++.+++|++|++++|......|.. + ++++|++|++++|......+..+ .+++.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 6555433333333 555555666666555543333433 2 45556666665555444333322 2345555555
Q ss_pred ccccccchh---------hhccCCCcEEeccCCCCCcccccccCC---CCCCCEEeccCCCCCccCC----------ccc
Q 001020 737 TAIEELPLS---------IECLSRLITLNLENCSRLECLSSSLCK---LKSLQHLNLFGCTKVERLP----------DEF 794 (1187)
Q Consensus 737 ~~i~~lp~~---------i~~l~~L~~L~L~~~~~l~~lp~~l~~---l~~L~~L~L~~~~~l~~lp----------~~l 794 (1187)
|.+..++.. +..+++|+.|++++|......|..+.. .++|+.|++++|....... ..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 555554422 223455666666665554444443322 2555555555543221100 011
Q ss_pred C--CcccccEEEcccCccccc-chhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCC
Q 001020 795 G--NLEALMEMKAVRSSIREL-PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQL 870 (1187)
Q Consensus 795 ~--~l~~L~~L~l~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l 870 (1187)
. ..++|+.|++++|.+..+ |..+..+++|+.|++++|..... ....+.++++|+.|+|++|.++.+ |..++.+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI---DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc---ChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 1 123555666665555533 33455555666666655554331 112345555566666666655553 3445555
Q ss_pred CCCcEEECccCCCccc-cccccCCCCCCEEeecCCCCCCcCCC----CCCCCCeeecccc
Q 001020 871 SSLHILFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQSLPE----LPCNISDMDANCC 925 (1187)
Q Consensus 871 ~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C 925 (1187)
++|+.|+|++|.++.+ |..+.++++|+.|+|++| .++.+|. -.++|+.|+++++
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 6666666666665544 445555666666666553 3444442 1235555555554
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=9.1e-27 Score=269.42 Aligned_cols=298 Identities=18% Similarity=0.230 Sum_probs=171.0
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 671 (1187)
+|+.|++.++.+..+|....+++|++|++++|.+..++. +..+++|++|+|++|.+ ..+|.+..+++|++|++++|.
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~- 121 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDN- 121 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSC-
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCc-
Confidence 444555555555555554456666666666666666655 56666666666666643 334556666666666666654
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCccc-ccccccceEeecCccccccchhhhccC
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFP-EIACTIEELFLDGTAIEELPLSIECLS 750 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~ 750 (1187)
+..++. +..+++|++|++++|.....++....+++|++|++++|......+ ..+.+|+.|++++|.+..++. +..++
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 199 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLT 199 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCT
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCC
Confidence 333333 566666666666666555555543356666666666554322111 123345555555566665555 56666
Q ss_pred CCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccc
Q 001020 751 RLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFER 830 (1187)
Q Consensus 751 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~ 830 (1187)
+|+.|++++|......+ +..+++|++|++++|... .++. +..+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS 274 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred ccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccC
Confidence 66666666654433222 556666666666665432 3333 566666666666666666553 455666666666666
Q ss_pred cCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 831 YQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 831 ~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
|.... ++.+..+++|+.|+|++|.++.. +..++.+++|+.|+|++|.++.++. +..+++|+.|++++|+
T Consensus 275 n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 275 NQISD-----ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SCCCC-----CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CccCC-----ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 64433 23455566666666666666643 3445666666666666666666554 5666666666666653
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.4e-26 Score=279.11 Aligned_cols=313 Identities=21% Similarity=0.285 Sum_probs=137.5
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 671 (1187)
+|+.|++.++.+..+|....+++|++|++++|.+..++. +..+++|++|+|++|.+....+ +.++++|++|++++|.
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~- 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ- 123 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-
Confidence 344455555555444443344455555555555544443 4445555555555444333222 4445555555554432
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCccc--ccccccceEeecCccccccchhhhcc
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFP--EIACTIEELFLDGTAIEELPLSIECL 749 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l 749 (1187)
+..++. +..+++|++|++++|. +..++...++++|++|+++++ +..++ ..+.+|+.|++++|.++.++. +..+
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l 198 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKVSDISV-LAKL 198 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcCCCChh-hccC
Confidence 222222 4445555555554443 223333223445555544321 11111 122344455555554444432 4444
Q ss_pred CCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEcc
Q 001020 750 SRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFE 829 (1187)
Q Consensus 750 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~ 829 (1187)
++|+.|++++|......| +..+++|++|++++|.. ..+ ..+..+++|+.|++++|.+..++. +..+++|+.|+++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLG 273 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCc-ccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECC
Confidence 555555555443332222 33444555555544432 222 124444455555555554444443 4444455555554
Q ss_pred ccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCc
Q 001020 830 RYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQS 909 (1187)
Q Consensus 830 ~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~ 909 (1187)
+|.... .+.+..+++|+.|+|++|.+..++. ++.+++|+.|+|++|.++.++. +..+++|+.|++++| .+..
T Consensus 274 ~n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 274 ANQISN-----ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp SSCCCC-----CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCC
T ss_pred CCccCc-----cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCC
Confidence 444332 1124444455555555555444433 3444455555555554444432 444455555555443 2333
Q ss_pred CCCC--CCCCCeeecccc
Q 001020 910 LPEL--PCNISDMDANCC 925 (1187)
Q Consensus 910 lp~l--~~sL~~L~i~~C 925 (1187)
++.+ .++|+.|++.+|
T Consensus 346 ~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 346 VSSLANLTNINWLSAGHN 363 (466)
T ss_dssp CGGGTTCTTCCEEECCSS
T ss_pred chhhccCCCCCEEeCCCC
Confidence 3321 234444544444
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5.6e-26 Score=280.62 Aligned_cols=373 Identities=14% Similarity=0.082 Sum_probs=264.7
Q ss_pred CcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCC-cc-cccccceEeCcCCCcccc-cccccccC
Q 001020 560 MHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPS-YI-HQENLIALEMPHSSVEKL-WGGAQQLV 636 (1187)
Q Consensus 560 m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~ 636 (1187)
+...++++++++.+.. .+.+ ++.+|+.|++++|.+..+|. .+ .+++|++|+|++|.+..+ |..+..++
T Consensus 30 ~~~~~~l~ls~~~L~~------ip~~---~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 30 NELESMVDYSNRNLTH------VPKD---LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp ---CCEEECTTSCCCS------CCTT---SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred cCCCcEEEcCCCCCcc------CCCC---CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 3345889998875533 2222 24789999999999999985 44 889999999999999988 56689999
Q ss_pred CccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcc-cccccccCCCcccEEEccCccCCcccCcccccccc--ceeec
Q 001020 637 NLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLL-EIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESL--KQLFL 713 (1187)
Q Consensus 637 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~-~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~L 713 (1187)
+|++|+|++|++. .+|.. .+++|++|+|++|.... ..|..++++++|++|++++|..... ....+++| ++|++
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILL 176 (562)
T ss_dssp TCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEE
T ss_pred CCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEe
Confidence 9999999999865 67765 89999999999986443 3457899999999999999874331 11235555 99999
Q ss_pred cccCC--CCcccccc-----------------------------cccceEeecCccc-----------------------
Q 001020 714 SGCSN--LNTFPEIA-----------------------------CTIEELFLDGTAI----------------------- 739 (1187)
Q Consensus 714 s~c~~--l~~~~~~~-----------------------------~~L~~L~L~~~~i----------------------- 739 (1187)
++|.. ....|..+ .+|+.|++++|..
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99876 33333322 2344555555420
Q ss_pred ----------cccchhhhccCCCcEEeccCCCCCccccccc-----CCC--------------------------CCCCE
Q 001020 740 ----------EELPLSIECLSRLITLNLENCSRLECLSSSL-----CKL--------------------------KSLQH 778 (1187)
Q Consensus 740 ----------~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l-----~~l--------------------------~~L~~ 778 (1187)
..++..+ ..++|++|++++|.....+|..+ .++ .+|++
T Consensus 257 ~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred cCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 0111111 12366666666665554555544 223 23566
Q ss_pred EeccCCCCCccCCcccCCcccccEEEcccCcccc-cchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccC
Q 001020 779 LNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRE-LPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSD 857 (1187)
Q Consensus 779 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 857 (1187)
|++++|.... .+ ....+++|++|++++|.++. +|..+..+++|+.|++++|...... .....+.++++|+.|+|++
T Consensus 336 L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 336 LSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCTTCCEEECTT
T ss_pred EEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCCCCCEEECCC
Confidence 6666654321 11 12678999999999999996 6788999999999999999765421 0012378899999999999
Q ss_pred CCCCC-cccc-cCCCCCCcEEECccCCCc-cccccccCCCCCCEEeecCCCCCCcCCCC---CCCCCeeecccccccccc
Q 001020 858 CGITE-LPNS-LGQLSSLHILFRDRNNFE-RIPTSIIHLTNLFLLKLSYCERLQSLPEL---PCNISDMDANCCTSLKEL 931 (1187)
Q Consensus 858 ~~l~~-l~~~-l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~l 931 (1187)
|.++. +|.. +..+++|+.|+|++|.++ .+|..+. ++|+.|+|++| .++.+|.- .++|+.|+++++ .++.+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSV 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCC
Confidence 99998 8764 688999999999999996 4454443 79999999997 67888852 468999999998 46666
Q ss_pred cCCccccCCCCCCCCceeeecCCCC
Q 001020 932 SGLSILFTPTTWNSQGLNFINCFNL 956 (1187)
Q Consensus 932 ~~~~~~~~~~~~~l~~L~~~~C~~L 956 (1187)
+... ....+.++.|++.+++--
T Consensus 489 ~~~~---~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 489 PDGV---FDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTS---TTTCTTCCCEECCSCCBC
T ss_pred CHHH---HhcCCCCCEEEecCCCcC
Confidence 6321 133467788888876533
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.9e-26 Score=277.19 Aligned_cols=352 Identities=16% Similarity=0.105 Sum_probs=275.6
Q ss_pred eEEEecCCCCCCCCCcccccccceEeCcCCCcccc-cccccccCCccEEEcCCCCCCcccCC--CCCCCCccEEecCCCC
Q 001020 594 KYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKL-WGGAQQLVNLKYMDLSHSKQLTEIPD--LSLASNIEKLNLDGCS 670 (1187)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~ 670 (1187)
+.++..+..++.+|. -+++|++|+|++|.+..+ |..+.++++|++|+|++|.....++. |.++++|++|+|++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 356777888999998 458999999999999988 67789999999999999988766653 9999999999999988
Q ss_pred CcccccccccCCCcccEEEccCccCCcccCcc--c-cccccceeeccccCCCCcccc----cccccceEeecCccccccc
Q 001020 671 SLLEIHPSIKYLNKLAILSLRHCKCIKSLPTS--I-HLESLKQLFLSGCSNLNTFPE----IACTIEELFLDGTAIEELP 743 (1187)
Q Consensus 671 ~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~--~-~l~~L~~L~Ls~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp 743 (1187)
.....|..++.+++|++|++++|......|.. + ++++|++|+|++|......|. .+.+|++|++++|.+..++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 76666889999999999999999865544443 4 699999999999987666554 3467999999999998764
Q ss_pred -hhhhcc--CCCcEEeccCCCCCccccc--------ccCCCCCCCEEeccCCCCCccCCcccCCc---ccccEEEcccCc
Q 001020 744 -LSIECL--SRLITLNLENCSRLECLSS--------SLCKLKSLQHLNLFGCTKVERLPDEFGNL---EALMEMKAVRSS 809 (1187)
Q Consensus 744 -~~i~~l--~~L~~L~L~~~~~l~~lp~--------~l~~l~~L~~L~L~~~~~l~~lp~~l~~l---~~L~~L~l~~n~ 809 (1187)
..+..+ .+|+.|++++|......+. .+..+++|++|++++|......|..+..+ .+|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 456655 7899999999876543332 24467899999999998777666655443 889999999875
Q ss_pred ccccc-----------hhhh--cCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCCCCCcE
Q 001020 810 IRELP-----------SSIV--QLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQLSSLHI 875 (1187)
Q Consensus 810 i~~lp-----------~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~ 875 (1187)
+.... ..+. ..++|+.|++++|..... ....+..+++|+.|+|++|.+..+ |..+..+++|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL---LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE---CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcccccc---chhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 44211 1122 236899999999987653 233478899999999999999986 568899999999
Q ss_pred EECccCCCccc-cccccCCCCCCEEeecCCCCCCcCCC---CCCCCCeeecccccccccccCCccccCCCCCCCCceeee
Q 001020 876 LFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQSLPE---LPCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFI 951 (1187)
Q Consensus 876 L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~ 951 (1187)
|+|++|.++.+ |..+.++++|+.|+|++|..-...|. -.++|+.|++++| .++.++... ...++.++.|++.
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~ 403 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI---FDRLTSLQKIWLH 403 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECC
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhH---hccCCcccEEEcc
Confidence 99999999977 55789999999999999754333343 2468999999997 466655221 1335678888887
Q ss_pred cCC
Q 001020 952 NCF 954 (1187)
Q Consensus 952 ~C~ 954 (1187)
+++
T Consensus 404 ~N~ 406 (455)
T 3v47_A 404 TNP 406 (455)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.5e-26 Score=276.68 Aligned_cols=307 Identities=17% Similarity=0.159 Sum_probs=233.7
Q ss_pred eEEEecCCCCCCCCCcccccccceEeCcCCCccccc-ccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCC
Q 001020 594 KYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLW-GGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 671 (1187)
+.++.++..+..+|..+ +.+|++|+|++|++..++ ..+..+++|++|+|++|.+....|. |.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-
Confidence 34555666666666654 356777777777777764 4567777777777777766555453 7777777777777754
Q ss_pred cccccc-cccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccc---cccccceEeecCccccccch-h
Q 001020 672 LLEIHP-SIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPE---IACTIEELFLDGTAIEELPL-S 745 (1187)
Q Consensus 672 l~~~~~-~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~---~~~~L~~L~L~~~~i~~lp~-~ 745 (1187)
+..+|. .+..+++|++|+|++|......|..+ ++++|++|++++|......+. .+.+|+.|++++|.++.+|. .
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 444443 45777777777777776544445444 477777777777654433332 23467888888888888875 4
Q ss_pred hhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch-hhhcCCCCC
Q 001020 746 IECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLY 824 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~ 824 (1187)
+..+++|+.|+|++|......+..+..+++|+.|++++|..+..+|.......+|+.|++++|.++.+|. .+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 8899999999999988777777788999999999999999888888877777899999999999999985 678899999
Q ss_pred EEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeec
Q 001020 825 RLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLS 902 (1187)
Q Consensus 825 ~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~ 902 (1187)
.|++++|..... ....+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|+
T Consensus 252 ~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 252 FLNLSYNPISTI---EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp EEECCSSCCCEE---CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred eeECCCCcCCcc---ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 999999876542 223477889999999999999885 6778899999999999999998876 56889999999999
Q ss_pred CCC
Q 001020 903 YCE 905 (1187)
Q Consensus 903 ~c~ 905 (1187)
+|+
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=6.5e-26 Score=262.25 Aligned_cols=305 Identities=21% Similarity=0.268 Sum_probs=252.2
Q ss_pred CCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCC
Q 001020 604 KAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLN 683 (1187)
Q Consensus 604 ~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~ 683 (1187)
..++....+++|++|+++++.+..++. +..+++|++|+|++|.+.. ++.+..+++|++|++++|. +..++ .+..++
T Consensus 35 ~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l~ 110 (347)
T 4fmz_A 35 TDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLT 110 (347)
T ss_dssp TSEECHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-GGTTCT
T ss_pred CCcccchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCcccc-chhhhcCCcCCEEEccCCc-ccCch-HHcCCC
Confidence 334444578999999999999999864 8899999999999997554 4459999999999999974 55554 699999
Q ss_pred cccEEEccCccCCcccCccccccccceeeccccCCCCcccc--cccccceEeecCccccccchhhhccCCCcEEeccCCC
Q 001020 684 KLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPE--IACTIEELFLDGTAIEELPLSIECLSRLITLNLENCS 761 (1187)
Q Consensus 684 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 761 (1187)
+|++|++++|. +..++...++++|++|++++|.....++. .+.+|++|++++|.+..++. +..+++|+.|++++|.
T Consensus 111 ~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp TCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred cCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence 99999999987 55666655799999999999988777665 34579999999999998887 8899999999999986
Q ss_pred CCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccC
Q 001020 762 RLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRL 841 (1187)
Q Consensus 762 ~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l 841 (1187)
.. .++. +..+++|+.|++++|.... ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.... +
T Consensus 189 l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-----~ 258 (347)
T 4fmz_A 189 IE-DISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-----I 258 (347)
T ss_dssp CC-CCGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----C
T ss_pred cc-cccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-----C
Confidence 54 4443 7889999999999976544 333 7889999999999999999887 8899999999999997654 3
Q ss_pred CCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccc-cccccCCCCCCEEeecCCCCCCcCCC--CCCCCC
Q 001020 842 PTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERI-PTSIIHLTNLFLLKLSYCERLQSLPE--LPCNIS 918 (1187)
Q Consensus 842 ~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~L~~c~~L~~lp~--l~~sL~ 918 (1187)
+.+..+++|+.|++++|.+++++ .+..+++|+.|+|++|.++.. |..+..+++|+.|+|++|+ +..++. -.++|+
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMD 336 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCS
T ss_pred hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccc
Confidence 56788999999999999999884 578899999999999999855 4578999999999999986 555443 245777
Q ss_pred eeeccccc
Q 001020 919 DMDANCCT 926 (1187)
Q Consensus 919 ~L~i~~C~ 926 (1187)
.|++.+|+
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 77777764
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=9.3e-26 Score=269.52 Aligned_cols=307 Identities=22% Similarity=0.299 Sum_probs=240.3
Q ss_pred cceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEE
Q 001020 563 LRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMD 642 (1187)
Q Consensus 563 Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 642 (1187)
|+.|+++++.+... ...+.+|++|++++|.+..+|.. +.+|++|++++|.+..++.. .++|++|+
T Consensus 73 l~~L~l~~~~l~~l----------p~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~ 137 (454)
T 1jl5_A 73 AHELELNNLGLSSL----------PELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLG 137 (454)
T ss_dssp CSEEECTTSCCSCC----------CSCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred CCEEEecCCccccC----------CCCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEE
Confidence 37788877644321 12356899999999999998875 48899999999999887643 26899999
Q ss_pred cCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcc
Q 001020 643 LSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTF 722 (1187)
Q Consensus 643 Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~ 722 (1187)
|++|.+.. +|.++++++|++|++++|. +..+|..+ .+|++|++++|. +..+|...++++|++|++++|. +..+
T Consensus 138 L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~-l~~l 210 (454)
T 1jl5_A 138 VSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LKKL 210 (454)
T ss_dssp CCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSC
T ss_pred CcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCCc-CCcC
Confidence 99997664 7889999999999999975 55566544 589999999986 5567854479999999999986 4457
Q ss_pred cccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccE
Q 001020 723 PEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALME 802 (1187)
Q Consensus 723 ~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 802 (1187)
|....+|+.|++++|.++.+|. ++.+++|+.|++++|.. ..+|. .+++|+.|++++|. +..+|.. +++|+.
T Consensus 211 ~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~ 281 (454)
T 1jl5_A 211 PDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTF 281 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCE
T ss_pred CCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcC-Ccccc---cccccCEEECCCCc-ccccCcc---cCcCCE
Confidence 7777899999999999999995 89999999999999764 44664 35899999999975 4456654 478999
Q ss_pred EEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCC-CCccEEeccCCCCCCcccccCCCCCCcEEECccC
Q 001020 803 MKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGL-RILTNLNLSDCGITELPNSLGQLSSLHILFRDRN 881 (1187)
Q Consensus 803 L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l-~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n 881 (1187)
|++++|.++.+|.. .++|+.|++++|..... ..+ ++|+.|++++|.++.+|.. +++|+.|+|++|
T Consensus 282 L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i--------~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 282 LDVSENIFSGLSEL---PPNLYYLNASSNEIRSL--------CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN 347 (454)
T ss_dssp EECCSSCCSEESCC---CTTCCEEECCSSCCSEE--------CCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS
T ss_pred EECcCCccCcccCc---CCcCCEEECcCCcCCcc--------cCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC
Confidence 99999999887642 26899999998875542 223 5899999999999988764 589999999999
Q ss_pred CCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCC
Q 001020 882 NFERIPTSIIHLTNLFLLKLSYCERLQSLPELPCNIS 918 (1187)
Q Consensus 882 ~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l~~sL~ 918 (1187)
.++.+|. .+++|+.|++++| .+..+|.+|.++.
T Consensus 348 ~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 348 HLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVE 380 (454)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCC
T ss_pred ccccccc---hhhhccEEECCCC-CCCcCCCChHHHH
Confidence 9999987 5789999999985 4555555444433
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-25 Score=263.60 Aligned_cols=298 Identities=14% Similarity=0.104 Sum_probs=148.4
Q ss_pred CCeeEEEecCCCCCCCCCcc--cccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEec
Q 001020 591 SELKYFHWNGYPLKAMPSYI--HQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNL 666 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 666 (1187)
.++++|++.++.+..+|..+ .+++|++|++++|.+..++. .+..+++|++|+|++|.+....|. +.++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 35666666666666666653 56677777777777766654 556677777777777765555454 666777777777
Q ss_pred CCCCCccccccc-ccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccch
Q 001020 667 DGCSSLLEIHPS-IKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL 744 (1187)
Q Consensus 667 ~~c~~l~~~~~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~ 744 (1187)
++|. +..+|.. ++.+++|++|++++|......|..+ ++++|++|++++|.....-...+.+|+.|++++|.++.++
T Consensus 125 ~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~- 202 (390)
T 3o6n_A 125 ERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA- 202 (390)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE-
T ss_pred CCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC-
Confidence 7653 4455544 4667777777777665433333333 4666666666665433322233444555555555444332
Q ss_pred hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc-chhhhcCCCC
Q 001020 745 SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-PSSIVQLNNL 823 (1187)
Q Consensus 745 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l~~l~~L 823 (1187)
..++|+.|++++|... .+|.. .+++|+.|++++|.... . ..+..+++|++|++++|.++.+ |..+..+++|
T Consensus 203 ---~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 203 ---IPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp ---CCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ---CCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 2234555555544322 22221 13444455554443221 1 2344444444444444444433 3334444444
Q ss_pred CEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecC
Q 001020 824 YRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSY 903 (1187)
Q Consensus 824 ~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~ 903 (1187)
+.|++++|..... ...+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+| +..+++|+.|+|++
T Consensus 275 ~~L~L~~n~l~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 275 ERLYISNNRLVAL----NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CEEECCSSCCCEE----ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CEEECCCCcCccc----CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 4444444332221 11123344444444444444444444444444444444444444443 33444444444444
Q ss_pred C
Q 001020 904 C 904 (1187)
Q Consensus 904 c 904 (1187)
|
T Consensus 349 N 349 (390)
T 3o6n_A 349 N 349 (390)
T ss_dssp S
T ss_pred C
Confidence 3
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-25 Score=275.89 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=184.6
Q ss_pred CCeeEEEecCCCCCCCCCcc--cccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEec
Q 001020 591 SELKYFHWNGYPLKAMPSYI--HQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNL 666 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 666 (1187)
.+++.|++.++.+..+|..+ .+++|++|+|++|.+..++. .+..+++|++|+|++|.+....|. |+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35666777777777777654 56777777777777776654 567777777777777765555554 677777777777
Q ss_pred CCCCCccccccc-ccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccch
Q 001020 667 DGCSSLLEIHPS-IKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL 744 (1187)
Q Consensus 667 ~~c~~l~~~~~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~ 744 (1187)
++|. +..+|.. ++.+++|++|+|++|......|..+ ++++|++|+|++|......+..+.+|+.|++++|.+..++
T Consensus 131 ~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~- 208 (597)
T 3oja_B 131 ERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA- 208 (597)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE-
T ss_pred eCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc-
Confidence 7754 4455544 4677777777777776444444444 4677777777776544433344556666666666665443
Q ss_pred hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc-chhhhcCCCC
Q 001020 745 SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-PSSIVQLNNL 823 (1187)
Q Consensus 745 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l~~l~~L 823 (1187)
..++|+.|++++|.. ..+|..+ .++|+.|+|++|.... +..+..+++|+.|++++|.+..+ |..+..+++|
T Consensus 209 ---~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 209 ---IPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp ---CCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ---CCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 334566666666543 2233222 2466666666654432 24556666666666666666644 4455666666
Q ss_pred CEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecC
Q 001020 824 YRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSY 903 (1187)
Q Consensus 824 ~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~ 903 (1187)
+.|++++|..... ...+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| +..+++|+.|+|++
T Consensus 281 ~~L~Ls~N~l~~l----~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 281 ERLYISNNRLVAL----NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CEEECTTSCCCEE----ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CEEECCCCCCCCC----CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 6666666554331 12234566666677777766666666666667777777776666654 55666666777666
Q ss_pred CC
Q 001020 904 CE 905 (1187)
Q Consensus 904 c~ 905 (1187)
|+
T Consensus 355 N~ 356 (597)
T 3oja_B 355 ND 356 (597)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=8.1e-25 Score=257.34 Aligned_cols=302 Identities=13% Similarity=0.125 Sum_probs=227.0
Q ss_pred CCcccccccceEeCcCCCccccccc-ccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCCCCcccccccccCCCc
Q 001020 607 PSYIHQENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNK 684 (1187)
Q Consensus 607 p~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~ 684 (1187)
+....+.+|+.|+++++.+..+|.. +..+++|++|+|++|.+....+ .+..+++|++|+|++|......|..++.+++
T Consensus 39 ~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 39 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3445789999999999999999987 4889999999999998766665 4999999999999998765555667899999
Q ss_pred ccEEEccCccCCcccCccc--cccccceeeccccCCCCccccc---ccccceEeecCccccccchhhhccCCCcEEeccC
Q 001020 685 LAILSLRHCKCIKSLPTSI--HLESLKQLFLSGCSNLNTFPEI---ACTIEELFLDGTAIEELPLSIECLSRLITLNLEN 759 (1187)
Q Consensus 685 L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~~~~~---~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 759 (1187)
|++|++++|. +..+|..+ ++++|++|++++|......+.. +.+|+.|++++|.++.++ +..+++|+.|++++
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCS
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccc
Confidence 9999999986 55777653 5999999999998765444433 356888888888888775 56788888888888
Q ss_pred CCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCc
Q 001020 760 CSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGL 839 (1187)
Q Consensus 760 ~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 839 (1187)
|... .+...++|++|++++|.. ..+|.. ..++|+.|++++|.++.. ..+..+++|+.|++++|.....
T Consensus 196 n~l~-----~~~~~~~L~~L~l~~n~l-~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~--- 263 (390)
T 3o6n_A 196 NLLS-----TLAIPIAVEELDASHNSI-NVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI--- 263 (390)
T ss_dssp SCCS-----EEECCSSCSEEECCSSCC-CEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE---
T ss_pred cccc-----ccCCCCcceEEECCCCee-eecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCc---
Confidence 6532 233456788888888654 333332 346788888888888776 4677788888888888765442
Q ss_pred cCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCC-CCCCCCC
Q 001020 840 RLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLP-ELPCNIS 918 (1187)
Q Consensus 840 ~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp-~l~~sL~ 918 (1187)
....+.++++|+.|+|++|+++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ +..+| ...++|+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~ 342 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLK 342 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCS
T ss_pred ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCC
Confidence 123367778888888888888887777777888888888888888888777788888888888764 44443 2233444
Q ss_pred eeeccc
Q 001020 919 DMDANC 924 (1187)
Q Consensus 919 ~L~i~~ 924 (1187)
.|++.+
T Consensus 343 ~L~l~~ 348 (390)
T 3o6n_A 343 NLTLSH 348 (390)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 444443
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=7.3e-24 Score=253.34 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=168.0
Q ss_pred cccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccc
Q 001020 555 QTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQ 634 (1187)
Q Consensus 555 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~ 634 (1187)
..+.++++|+.|+++++.+... +++.. ..+|++|++++|.+..+| ...+++|++|++++|.+..++ +..
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-------~~l~~-l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-------TGIEK-LTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-------TTGGG-CTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred cChhHcCCCCEEEccCCCcccC-------hhhcc-cCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCC
Confidence 3556677777777776544321 12222 345666666666666665 335666666666666666653 556
Q ss_pred cCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeecc
Q 001020 635 LVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLS 714 (1187)
Q Consensus 635 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls 714 (1187)
+++|++|+|++|++.. +| ++.+++|++|++++|. +..++ ++.+++|+.|++++|..+..++ ...+++|++|+++
T Consensus 105 l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECC
Confidence 6666666666665433 33 6666666666666653 22332 5566666666666665444442 1245555555555
Q ss_pred ccCCCCccc-ccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcc
Q 001020 715 GCSNLNTFP-EIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDE 793 (1187)
Q Consensus 715 ~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 793 (1187)
+|.... +| ..+.+|+.|++++|.++.++ ++.+++|+.|++++|.... +| +..+++|+.|++++|.... +|
T Consensus 179 ~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~-- 249 (457)
T 3bz5_A 179 FNKITE-LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD-- 249 (457)
T ss_dssp SSCCCC-CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred CCccce-eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC--
Confidence 543222 22 12234445555555554442 4444555555555443322 33 4444455555554443222 22
Q ss_pred cCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC-ccc-------
Q 001020 794 FGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE-LPN------- 865 (1187)
Q Consensus 794 l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-l~~------- 865 (1187)
++.+++|+.|++++|. |+.|++++|..... +| +..+++|+.|+|++|.... +|.
T Consensus 250 ~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~----~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIY----FQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCE----EE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred HHHCCCCCEEeccCCC-------------CCEEECCCCccCCc----cc-ccccccCCEEECCCCcccceeccCCCcceE
Confidence 2333444444443332 22233333332211 12 3456777777777775332 221
Q ss_pred -ccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCC
Q 001020 866 -SLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 866 -~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp 911 (1187)
.+..+++|+.|+|++|+++.++ +.++++|+.|++++| .+..++
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS-CCCBCT
T ss_pred echhhcccCCEEECCCCcccccc--cccCCcCcEEECCCC-CCCCcc
Confidence 2456689999999999999885 889999999999984 555554
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.9e-24 Score=269.56 Aligned_cols=376 Identities=20% Similarity=0.229 Sum_probs=214.7
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCc-c-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSY-I-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L 618 (1187)
.+|++.+....+.+.+|.++++|++|++++|.+. ..+.+...-..+|++|++++|.++.+|.. | .+.+|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC------CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 5777777777888899999999999999987553 23334344456899999999999998865 4 78999999
Q ss_pred eCcCCCccccccc-ccccCCccEEEcCCCCCCc-ccCC-CCCCCCccEEecCCCCCcccccccccCCCccc----EEEcc
Q 001020 619 EMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLT-EIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLA----ILSLR 691 (1187)
Q Consensus 619 ~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~----~L~L~ 691 (1187)
+|++|+++.++.. ++++++|++|+|++|.+.. ..|. ++.+++|++|+|++|......+..+..+.+++ .++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999999998764 7899999999999998654 3454 78899999999998764333333333222211 22332
Q ss_pred CccCCcccCc-cccc-----------------------------------------------------------------
Q 001020 692 HCKCIKSLPT-SIHL----------------------------------------------------------------- 705 (1187)
Q Consensus 692 ~c~~l~~lp~-~~~l----------------------------------------------------------------- 705 (1187)
.|.. ..++. ....
T Consensus 210 ~n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcc-cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 2211 00000 0000
Q ss_pred -----------------cccceeeccccCCCCccc-ccccccceEeecCccccccch--------------------hhh
Q 001020 706 -----------------ESLKQLFLSGCSNLNTFP-EIACTIEELFLDGTAIEELPL--------------------SIE 747 (1187)
Q Consensus 706 -----------------~~L~~L~Ls~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~--------------------~i~ 747 (1187)
.+++.+.+.++......+ ....+++.|++.++.+..++. ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 011111111100000000 001123344444333332221 122
Q ss_pred ccCCCcEEeccCCCCCc--c-----------------------cccccCCCCCCCEEeccCCCCCccCC-cccCCccccc
Q 001020 748 CLSRLITLNLENCSRLE--C-----------------------LSSSLCKLKSLQHLNLFGCTKVERLP-DEFGNLEALM 801 (1187)
Q Consensus 748 ~l~~L~~L~L~~~~~l~--~-----------------------lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~ 801 (1187)
.+++|+.|++++|.... . ++..+..+++|+.+++.++......+ ..+..+.+|+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 45556666666554321 1 22234445555555555444332222 3355566666
Q ss_pred EEEcccCcccccc-hhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCCCCCcEEECc
Q 001020 802 EMKAVRSSIRELP-SSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRD 879 (1187)
Q Consensus 802 ~L~l~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~ 879 (1187)
.++++.|.+..++ ..+..+++|+.|++++|..... .....+..+++|+.|+|++|+++.+ |..++++++|+.|+|+
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~--~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccc--cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 6666666666443 3445566777777766653321 1112356667777777777777764 4556677777777777
Q ss_pred cCCCccccc-cccCCCCCCEEeecCCCCCCcCCC----CCCCCCeeecccc
Q 001020 880 RNNFERIPT-SIIHLTNLFLLKLSYCERLQSLPE----LPCNISDMDANCC 925 (1187)
Q Consensus 880 ~n~l~~lp~-~l~~L~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C 925 (1187)
+|+|+.++. .+.++++|+.|+|++|+-....|+ +|++|+.|+++++
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 777776654 466777777777776542222222 3455666665554
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-24 Score=267.15 Aligned_cols=302 Identities=13% Similarity=0.130 Sum_probs=239.6
Q ss_pred CcccccccceEeCcCCCccccccc-ccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCCCCcccccccccCCCcc
Q 001020 608 SYIHQENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKL 685 (1187)
Q Consensus 608 ~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L 685 (1187)
....+.+++.|+++++.+..+|.. +..+++|++|+|++|.+....| .|+.+++|++|+|++|......|..++.+++|
T Consensus 46 ~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 46 EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 344678999999999999999887 4889999999999998776666 59999999999999987555555568999999
Q ss_pred cEEEccCccCCcccCccc--cccccceeeccccCCCCccccc---ccccceEeecCccccccchhhhccCCCcEEeccCC
Q 001020 686 AILSLRHCKCIKSLPTSI--HLESLKQLFLSGCSNLNTFPEI---ACTIEELFLDGTAIEELPLSIECLSRLITLNLENC 760 (1187)
Q Consensus 686 ~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~~~~~---~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 760 (1187)
++|+|++|. +..+|..+ ++++|++|+|++|......|.. +.+|+.|++++|.++.++ ++.+++|+.|++++|
T Consensus 126 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence 999999987 55666653 6999999999998766555543 457889999999998876 677899999999987
Q ss_pred CCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCcc
Q 001020 761 SRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLR 840 (1187)
Q Consensus 761 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 840 (1187)
... .+...++|+.|++++|.. ..++..+ .++|+.|++++|.++.. ..+..+++|+.|++++|..... .
T Consensus 203 ~l~-----~l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~---~ 270 (597)
T 3oja_B 203 LLS-----TLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI---M 270 (597)
T ss_dssp CCS-----EEECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE---E
T ss_pred ccc-----cccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC---C
Confidence 543 234567899999998764 3333322 36899999999998875 5688889999999998876543 2
Q ss_pred CCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCC-CCCCCCCe
Q 001020 841 LPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLP-ELPCNISD 919 (1187)
Q Consensus 841 l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp-~l~~sL~~ 919 (1187)
...+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ +..+| ...++|+.
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~ 349 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKN 349 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSE
T ss_pred HHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCE
Confidence 23477888999999999999988888888899999999999999998888889999999999865 44443 33456666
Q ss_pred eecccc
Q 001020 920 MDANCC 925 (1187)
Q Consensus 920 L~i~~C 925 (1187)
|+++++
T Consensus 350 L~l~~N 355 (597)
T 3oja_B 350 LTLSHN 355 (597)
T ss_dssp EECCSS
T ss_pred EEeeCC
Confidence 666655
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.6e-24 Score=256.01 Aligned_cols=298 Identities=16% Similarity=0.144 Sum_probs=224.1
Q ss_pred cccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCcccccccceEeCc
Q 001020 542 LDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSYIHQENLIALEMP 621 (1187)
Q Consensus 542 ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~ 621 (1187)
+|++.+....++ .|..+++|+.|++++|.+...+ + ....+|++|++++|.+..+| ...+++|++|+++
T Consensus 47 L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--------~-~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 47 LDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--------L-SQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114 (457)
T ss_dssp EECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--------C-TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred EEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--------c-ccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence 455554333332 6899999999999988664321 2 23468999999999999986 4589999999999
Q ss_pred CCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCc
Q 001020 622 HSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPT 701 (1187)
Q Consensus 622 ~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~ 701 (1187)
+|.+..++ +..+++|++|++++|.+.. + +++.+++|++|++++|..+..+ .++.+++|+.|++++|. ++.+|
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~- 186 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD- 186 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC-
T ss_pred CCcCCeec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec-
Confidence 99999986 8899999999999998665 4 4899999999999999777766 58899999999999986 56676
Q ss_pred cccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEec
Q 001020 702 SIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNL 781 (1187)
Q Consensus 702 ~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 781 (1187)
...+++|+.|++++|.....--..+.+|+.|++++|.++.+| +..+++|+.|++++|..... | +..+++|+.|++
T Consensus 187 l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l 261 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL-D--VSTLSKLTTLHC 261 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc-C--HHHCCCCCEEec
Confidence 347999999999998754432334568999999999999998 88999999999999866543 3 345666666555
Q ss_pred cC----------CCCCccCCcccCCcccccEEEcccCcc-cccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCc
Q 001020 782 FG----------CTKVERLPDEFGNLEALMEMKAVRSSI-RELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRIL 850 (1187)
Q Consensus 782 ~~----------~~~l~~lp~~l~~l~~L~~L~l~~n~i-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L 850 (1187)
++ |.....+| ++.+++|+.|++++|.. ..+|. ..++|+.|+ +.++++|
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~----------------l~~~~~L 320 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELD----------------LSQNPKL 320 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC----------------CTTCTTC
T ss_pred cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEec----------------hhhcccC
Confidence 44 33333333 23445555555555532 12222 122222222 4556789
Q ss_pred cEEeccCCCCCCcccccCCCCCCcEEECccCCCcccc
Q 001020 851 TNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 851 ~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp 887 (1187)
+.|++++|+++.++ ++.+++|+.|++++|+++.+|
T Consensus 321 ~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 321 VYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp CEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred CEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence 99999999999874 889999999999999988754
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=261.44 Aligned_cols=292 Identities=20% Similarity=0.192 Sum_probs=242.9
Q ss_pred CCCeeEEEecCCCCCCCCC-cc-cccccceEeCcCCCcccc-cccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEe
Q 001020 590 FSELKYFHWNGYPLKAMPS-YI-HQENLIALEMPHSSVEKL-WGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLN 665 (1187)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 665 (1187)
+.+++.|++++|.+..++. .| .+++|++|+|++|.+..+ |..+.++++|++|+|++|.+....+. |.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4678889999999888754 34 789999999999999987 66788999999999999976554444 78999999999
Q ss_pred cCCCCCcccccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccc---cccccceEeecCccccc
Q 001020 666 LDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPE---IACTIEELFLDGTAIEE 741 (1187)
Q Consensus 666 L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~---~~~~L~~L~L~~~~i~~ 741 (1187)
|++|......+..+..+++|+.|++++|......+..+ ++++|++|+|++|......+. .+.+|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99987766667788999999999999987555455555 589999999999864433322 35679999999999998
Q ss_pred cch-hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCC-cccCCcccccEEEcccCcccccch-hhh
Q 001020 742 LPL-SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLP-DEFGNLEALMEMKAVRSSIRELPS-SIV 818 (1187)
Q Consensus 742 lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~n~i~~lp~-~l~ 818 (1187)
++. .+..+++|+.|++++|..+..+|..+....+|+.|++++|.. ..+| ..+..+++|+.|++++|.++.++. .+.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 765 588999999999999999999988888888999999999864 4566 578999999999999999998775 578
Q ss_pred cCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-ccCCCCCCcEEECccCCCcc
Q 001020 819 QLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-SLGQLSSLHILFRDRNNFER 885 (1187)
Q Consensus 819 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~ 885 (1187)
.+++|+.|++++|..... ....+.++++|+.|+|++|.++.++. .+..+++|+.|+|++|.+..
T Consensus 270 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVV---EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TCTTCCEEECCSSCCSEE---CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccccCCEEECCCCccceE---CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 899999999999976653 23358899999999999999999875 46889999999999998863
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.7e-24 Score=258.61 Aligned_cols=321 Identities=22% Similarity=0.205 Sum_probs=227.1
Q ss_pred CCeeEEEecCCCCCCCCCcc-cccccceEeCcCCCcc-cccccccccCCc-------------cEEEcCCCCCCcccCCC
Q 001020 591 SELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVE-KLWGGAQQLVNL-------------KYMDLSHSKQLTEIPDL 655 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~-~l~~~~~~l~~L-------------~~L~Ls~~~~l~~~p~l 655 (1187)
..|+.|.++++.+..+|..+ .+++|++|++++|.+. .+|.+++.+.+| +.|++++|. +..+|.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 57999999999999999877 8899999999999887 788888887765 899999987 4455553
Q ss_pred CCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCccccc--ccccceEe
Q 001020 656 SLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEI--ACTIEELF 733 (1187)
Q Consensus 656 ~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~--~~~L~~L~ 733 (1187)
.++|++|++++|. +..+|.. +++|++|++++|. +..+|.. .++|++|++++|... .+|.. +.+|++|+
T Consensus 90 --~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~--~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 --PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL--PPLLEYLGVSNNQLE-KLPELQNSSFLKIID 159 (454)
T ss_dssp --CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC--CTTCCEEECCSSCCS-SCCCCTTCTTCCEEE
T ss_pred --cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC--CCCCCEEECcCCCCC-CCcccCCCCCCCEEE
Confidence 4789999998865 4446653 4789999998875 4455542 268999999988644 46642 34688999
Q ss_pred ecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc
Q 001020 734 LDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL 813 (1187)
Q Consensus 734 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l 813 (1187)
+++|.++.+|..+ .+|++|++++|... .+| .+.++++|+.|++++|.. ..+|... ++|++|++++|.++.+
T Consensus 160 l~~N~l~~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 160 VDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSL-KKLPDLP---LSLESIVAGNNILEEL 230 (454)
T ss_dssp CCSSCCSCCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC-SSCCCCC---TTCCEEECCSSCCSSC
T ss_pred CCCCcCcccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcC-CcCCCCc---CcccEEECcCCcCCcc
Confidence 9999998888654 58999999987544 467 588899999999998754 3455433 5899999999999988
Q ss_pred chhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCC
Q 001020 814 PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHL 893 (1187)
Q Consensus 814 p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 893 (1187)
|. +..+++|+.|++++|.... +|. .+++|+.|++++|.+..+|.. +++|+.|++++|.++.+|.. .
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~-----l~~--~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~ 296 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKT-----LPD--LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---P 296 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSS-----CCS--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---C
T ss_pred cc-cCCCCCCCEEECCCCcCCc-----ccc--cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc---C
Confidence 84 8889999999998887654 232 247899999999998887754 47899999999998887642 2
Q ss_pred CCCCEEeecCCCCCCcCCCCCCCCCeeecccccccccccCCccccCCCCCCCCceeeecCC
Q 001020 894 TNLFLLKLSYCERLQSLPELPCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINCF 954 (1187)
Q Consensus 894 ~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~ 954 (1187)
++|+.|++++| .+..++.+|++|+.|+++++. ++.++. ..+.++.|++.+|.
T Consensus 297 ~~L~~L~l~~N-~l~~i~~~~~~L~~L~Ls~N~-l~~lp~-------~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 297 PNLYYLNASSN-EIRSLCDLPPSLEELNVSNNK-LIELPA-------LPPRLERLIASFNH 348 (454)
T ss_dssp TTCCEEECCSS-CCSEECCCCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC
T ss_pred CcCCEEECcCC-cCCcccCCcCcCCEEECCCCc-cccccc-------cCCcCCEEECCCCc
Confidence 68999999885 577788888899999998873 555442 13567788887763
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=6.1e-23 Score=235.41 Aligned_cols=284 Identities=14% Similarity=0.149 Sum_probs=156.4
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
+++.++++++.+..+|..+ +++|++|++++|.+..++. .+..+++|++|+|++|.+....|. +..+++|++|+|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4666777777777777654 3567777777777777765 467777777777777776655453 777777777777775
Q ss_pred CCcccccccccCCCcccEEEccCccCCcccCc-cc-cccccceeeccccCCCCcccccccccceEeecCccccccchhhh
Q 001020 670 SSLLEIHPSIKYLNKLAILSLRHCKCIKSLPT-SI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIE 747 (1187)
Q Consensus 670 ~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~ 747 (1187)
. +..+|..+. ++|++|++++|... .++. .+ ++++|++|++++|..... ...+..+.
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~------------------~~~~~~~~ 168 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS------------------GIENGAFQ 168 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGG------------------GBCTTGGG
T ss_pred c-CCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCcc------------------CcChhhcc
Confidence 4 445665544 67777777776533 3332 22 466666666666543210 01222334
Q ss_pred ccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch-hhhcCCCCCEE
Q 001020 748 CLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLYRL 826 (1187)
Q Consensus 748 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L 826 (1187)
.+++|+.|++++|.. ..+|..+. ++|++|++++|......|..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus 169 ~l~~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 169 GMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp GCTTCCEEECCSSCC-CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCCCcCEEECCCCcc-ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 444444444444332 22332221 444555554444333334444455555555555555544433 44445555555
Q ss_pred EccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccc-cC------CCCCCcEEECccCCCcc---ccccccCCCCC
Q 001020 827 SFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNS-LG------QLSSLHILFRDRNNFER---IPTSIIHLTNL 896 (1187)
Q Consensus 827 ~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-l~------~l~~L~~L~L~~n~l~~---lp~~l~~L~~L 896 (1187)
++++|..... ...+..+++|+.|+|++|.++.++.. +. ..++|+.|+|++|.+.. .|..+..+++|
T Consensus 246 ~L~~N~l~~l----p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 246 HLNNNKLVKV----PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp ECCSSCCSSC----CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred ECCCCcCccC----ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 5555543321 11244556666666666666655432 11 23677777887777752 24467777788
Q ss_pred CEEeecCCC
Q 001020 897 FLLKLSYCE 905 (1187)
Q Consensus 897 ~~L~L~~c~ 905 (1187)
+.|+|++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 888877753
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3.5e-23 Score=237.62 Aligned_cols=280 Identities=17% Similarity=0.202 Sum_probs=167.3
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
+++.++++++.++.+|..+ .++|++|++++|.+..++. .+..+++|++|+|++|.+....|. +.++++|++|+|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4566677777777777655 3567777777777776643 567777777777777766555453 777777777777775
Q ss_pred CCcccccccccCCCcccEEEccCccCCcccCcc-c-cccccceeeccccCCCC--ccccccc--ccceEeecCccccccc
Q 001020 670 SSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTS-I-HLESLKQLFLSGCSNLN--TFPEIAC--TIEELFLDGTAIEELP 743 (1187)
Q Consensus 670 ~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~--~~~~~~~--~L~~L~L~~~~i~~lp 743 (1187)
. +..+|..+. ++|++|++++|.. ..+|.. + ++++|++|++++|.... ..+..+. +|+.|++++|.++.+|
T Consensus 113 ~-l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 H-LVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp C-CCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred c-CCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 3 445665554 6777777777653 344432 3 47777777777665421 2222221 5666666666666666
Q ss_pred hhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCC
Q 001020 744 LSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNL 823 (1187)
Q Consensus 744 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L 823 (1187)
..+. ++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.++.+|..+..+++|
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 5443 56666666666555444455666666666666665544444445666666666666666666665555555544
Q ss_pred CEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-ccC------CCCCCcEEECccCCCc--c-ccccccCC
Q 001020 824 YRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-SLG------QLSSLHILFRDRNNFE--R-IPTSIIHL 893 (1187)
Q Consensus 824 ~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~l~------~l~~L~~L~L~~n~l~--~-lp~~l~~L 893 (1187)
+.| +|++|.++.++. .+. ..++|+.|+|++|.+. . .|..+..+
T Consensus 267 ~~L---------------------------~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 267 QVV---------------------------YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp CEE---------------------------ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CEE---------------------------ECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 444 444444444332 111 1356777777777665 2 34456777
Q ss_pred CCCCEEeecCCC
Q 001020 894 TNLFLLKLSYCE 905 (1187)
Q Consensus 894 ~~L~~L~L~~c~ 905 (1187)
++|+.|++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 777777777764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=9.2e-23 Score=234.11 Aligned_cols=282 Identities=15% Similarity=0.182 Sum_probs=213.8
Q ss_pred cccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCCCCcccccccccCCCcccEEEcc
Q 001020 613 ENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLR 691 (1187)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~ 691 (1187)
.+|+.++++++.+..+|..+. ++|+.|+|++|.+....| .+.++++|++|+|++|......|..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 478999999999999988763 689999999998766555 38899999999999876555557788889999999998
Q ss_pred CccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchh-hhccCCCcEEeccCCCCCc--cccc
Q 001020 692 HCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLS-IECLSRLITLNLENCSRLE--CLSS 768 (1187)
Q Consensus 692 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~--~lp~ 768 (1187)
+|. +..+|..+. + +|++|++++|.++.+|.. +..+++|+.|++++|.... ..|.
T Consensus 111 ~n~-l~~l~~~~~-~---------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 111 KNH-LVEIPPNLP-S---------------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp SSC-CCSCCSSCC-T---------------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred CCc-CCccCcccc-c---------------------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 876 445554332 3 455556666677777654 7788899999998887642 5566
Q ss_pred ccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccc-hhhhcCCCCCEEEccccCCCCcCCccCCCCCCC
Q 001020 769 SLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELP-SSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGL 847 (1187)
Q Consensus 769 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l 847 (1187)
.+..+ +|+.|++++|. +..+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|..... ....+..+
T Consensus 168 ~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~---~~~~~~~l 240 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI---ENGSLSFL 240 (332)
T ss_dssp SSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC---CTTGGGGC
T ss_pred cccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC---ChhHhhCC
Confidence 67777 89999998865 445666554 68999999999998776 5788899999999998876553 12247788
Q ss_pred CCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccc-cccC------CCCCCEEeecCCCCCC-cCC-C---CCC
Q 001020 848 RILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPT-SIIH------LTNLFLLKLSYCERLQ-SLP-E---LPC 915 (1187)
Q Consensus 848 ~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~------L~~L~~L~L~~c~~L~-~lp-~---l~~ 915 (1187)
++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|. .+.. .++|+.|++++|+... .++ . -.+
T Consensus 241 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 99999999999999999999999999999999999998875 3332 5789999999987441 222 2 134
Q ss_pred CCCeeeccccc
Q 001020 916 NISDMDANCCT 926 (1187)
Q Consensus 916 sL~~L~i~~C~ 926 (1187)
+|+.|++.++.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 66667666653
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3.6e-22 Score=228.99 Aligned_cols=283 Identities=17% Similarity=0.184 Sum_probs=220.5
Q ss_pred ccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCCCCcccccccccCCCcccEEEc
Q 001020 612 QENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSL 690 (1187)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L 690 (1187)
..+|+.++++++.+..+|..+. ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3578999999999999987664 689999999998666555 3888999999999987655555778888889999998
Q ss_pred cCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccch-hhhccCCCcEEeccCCCCCc--ccc
Q 001020 691 RHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLE--CLS 767 (1187)
Q Consensus 691 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~--~lp 767 (1187)
++|. +..+|..+. .+|++|++++|.++.++. .+..+++|+.|++++|.... ..+
T Consensus 108 s~n~-l~~l~~~~~----------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 108 SKNQ-LKELPEKMP----------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CSSC-CSBCCSSCC----------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CCCc-CCccChhhc----------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 8876 445554321 356666666677777765 47899999999999987743 567
Q ss_pred cccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc-chhhhcCCCCCEEEccccCCCCcCCccCCCCCC
Q 001020 768 SSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSG 846 (1187)
Q Consensus 768 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 846 (1187)
..+..+++|++|++++|. +..+|..+. ++|+.|++++|.++.+ |..+..+++|+.|++++|..... ....+..
T Consensus 165 ~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~ 238 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV---DNGSLAN 238 (330)
T ss_dssp TGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE---CTTTGGG
T ss_pred hhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee---ChhhccC
Confidence 788999999999999975 456776554 8999999999999977 56889999999999999986553 2224788
Q ss_pred CCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccccc-cc------CCCCCCEEeecCCCCCC-cCC-C---CC
Q 001020 847 LRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTS-II------HLTNLFLLKLSYCERLQ-SLP-E---LP 914 (1187)
Q Consensus 847 l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~-l~------~L~~L~~L~L~~c~~L~-~lp-~---l~ 914 (1187)
+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|.. +. ..+.|+.|++++|+... .++ . -.
T Consensus 239 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp STTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 9999999999999999999999999999999999999988763 32 35889999999987432 122 1 12
Q ss_pred CCCCeeecccc
Q 001020 915 CNISDMDANCC 925 (1187)
Q Consensus 915 ~sL~~L~i~~C 925 (1187)
.+++.+++.++
T Consensus 319 ~~l~~l~L~~N 329 (330)
T 1xku_A 319 YVRAAVQLGNY 329 (330)
T ss_dssp CCGGGEEC---
T ss_pred cceeEEEeccc
Confidence 35556665543
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=5e-22 Score=244.33 Aligned_cols=255 Identities=22% Similarity=0.274 Sum_probs=151.5
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 671 (1187)
+++.|+++++.++.+|..+. ++|++|+|++|+|+.+|. .+++|++|+|++|++ +.+|. .+++|++|+|++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSNP- 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSCC-
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCCc-
Confidence 35566666666666666553 667777777777776665 456777777777653 34444 56667777776643
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCC
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSR 751 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 751 (1187)
+..+|. .+++|+.|++++|. +..+|.. +++|++|+|++|. +..+|..+.+|+.|++++|.++.+| ..+++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc---ccCCC
Confidence 444444 45667777777665 4455543 3667777777653 4445556666777777777777766 34566
Q ss_pred CcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEcccc
Q 001020 752 LITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERY 831 (1187)
Q Consensus 752 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~ 831 (1187)
|+.|+|++|.. ..+|. .+++|+.|++++|. +..+|.. +++|+.|++++|.|+.+|
T Consensus 183 L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~lp----------------- 237 (622)
T 3g06_A 183 LQELSVSDNQL-ASLPT---LPSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLP----------------- 237 (622)
T ss_dssp CCEEECCSSCC-SCCCC---CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCC-----------------
T ss_pred CcEEECCCCCC-CCCCC---ccchhhEEECcCCc-ccccCCC---CCCCCEEEccCCccCcCC-----------------
Confidence 66666666543 23332 23455555555543 2333321 244555555555554444
Q ss_pred CCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 832 QGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 832 ~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
..+++|+.|+|++|+++.+|. .+++|+.|+|++|.|+.+|..+.++++|+.|+|++|+
T Consensus 238 -------------~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 -------------VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -------------CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -------------CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 233556666666666666665 4566666666666666666666666666777766655
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2e-23 Score=237.23 Aligned_cols=247 Identities=21% Similarity=0.267 Sum_probs=135.9
Q ss_pred CccEEEcCCCCCCc--ccCC-CCCCCCccEEecCC-CCCcccccccccCCCcccEEEccCccCCcccCccc-ccccccee
Q 001020 637 NLKYMDLSHSKQLT--EIPD-LSLASNIEKLNLDG-CSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQL 711 (1187)
Q Consensus 637 ~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~-c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L 711 (1187)
+++.|+|++|.+.. .+|. +.++++|++|+|++ |.....+|..++.+++|++|++++|.....+|..+ ++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444333 3332 44444444444443 33333444455555555555555544333444333 23444444
Q ss_pred eccccCCCCcccccccccceEeecCcccc-ccchhhhccCCCcEEeccCCCCCcccccccCCCC-CCCEEeccCCCCCcc
Q 001020 712 FLSGCSNLNTFPEIACTIEELFLDGTAIE-ELPLSIECLSRLITLNLENCSRLECLSSSLCKLK-SLQHLNLFGCTKVER 789 (1187)
Q Consensus 712 ~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~~~~l~~ 789 (1187)
++++ |.++ .+|..+..+++|++|+|++|.....+|..+..++ +|++|++++|.....
T Consensus 131 ~Ls~---------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 131 DFSY---------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp ECCS---------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred eCCC---------------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 3333 3333 3445555666666666666555545666666665 666666666555555
Q ss_pred CCcccCCcccccEEEcccCccc-ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCC-Cccccc
Q 001020 790 LPDEFGNLEALMEMKAVRSSIR-ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGIT-ELPNSL 867 (1187)
Q Consensus 790 lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~-~l~~~l 867 (1187)
+|..+..+. |+.|++++|.+. ..|..+..+++|+.|++++|..... .+.+..+++|++|+|++|.++ .+|..+
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----LGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB----GGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee----cCcccccCCCCEEECcCCcccCcCChHH
Confidence 566666555 666666666665 3344555556666666655554321 233455667777777777776 466677
Q ss_pred CCCCCCcEEECccCCCc-cccccccCCCCCCEEeecCCCCCCcC
Q 001020 868 GQLSSLHILFRDRNNFE-RIPTSIIHLTNLFLLKLSYCERLQSL 910 (1187)
Q Consensus 868 ~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~L~~c~~L~~l 910 (1187)
..+++|+.|+|++|.++ .+|.. .++++|+.|++++|+.+...
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 77777777777777776 55544 66777777777776655443
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=7.8e-22 Score=247.49 Aligned_cols=356 Identities=21% Similarity=0.202 Sum_probs=245.5
Q ss_pred ccccccccccccCccccccCcccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCCCCCCCCc-c-cccccceE
Q 001020 541 SLDMSKVKDINLNPQTFIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYPLKAMPSY-I-HQENLIAL 618 (1187)
Q Consensus 541 ~ld~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L 618 (1187)
.+|++.+....+.+.+|.++++|++|++++|.+. .++.+...-..+|++|++++|.+..+|.. | ++++|++|
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 4677777777788999999999999999988653 23334334456899999999999999875 4 88999999
Q ss_pred eCcCCCccc--ccccccccCCccEEEcCCCCCCcccCC-CCCCC---------------------------CccEEecCC
Q 001020 619 EMPHSSVEK--LWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLAS---------------------------NIEKLNLDG 668 (1187)
Q Consensus 619 ~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~---------------------------~L~~L~L~~ 668 (1187)
+|++|.+.. +|..+..+++|++|+|++|++....+. +..+. .++.|++.+
T Consensus 154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc
Confidence 999999985 467788999999999999986544332 22221 122233322
Q ss_pred CCCccc-c---------------------------------------------------------cc-------------
Q 001020 669 CSSLLE-I---------------------------------------------------------HP------------- 677 (1187)
Q Consensus 669 c~~l~~-~---------------------------------------------------------~~------------- 677 (1187)
|..... . ..
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence 210000 0 00
Q ss_pred ---------cccCCCcccEEEccCccCCc--------------------ccCccccccccceeeccccCCCCc--ccc--
Q 001020 678 ---------SIKYLNKLAILSLRHCKCIK--------------------SLPTSIHLESLKQLFLSGCSNLNT--FPE-- 724 (1187)
Q Consensus 678 ---------~i~~L~~L~~L~L~~c~~l~--------------------~lp~~~~l~~L~~L~Ls~c~~l~~--~~~-- 724 (1187)
.+.....|+.|++.+|.... ..+....+++|+.|++++|..... .+.
T Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 314 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp ESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch
Confidence 01111223333333332110 001111233444444444332111 010
Q ss_pred -cccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccc-cccCCCCCCCEEeccCCCCCccCCcccCCcccccE
Q 001020 725 -IACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLS-SSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALME 802 (1187)
Q Consensus 725 -~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 802 (1187)
...+|+.|++..+.+..++..+..+++|+.+++..+......+ ..+..+++|+.++++.|......+..+..+++|+.
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred hhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 1224555555555555556666777788888887766555443 45788999999999998877777888999999999
Q ss_pred EEcccCccc--ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECc
Q 001020 803 MKAVRSSIR--ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRD 879 (1187)
Q Consensus 803 L~l~~n~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~ 879 (1187)
|++++|.+. ..|..+..+++|+.|++++|..... ....+.++++|+.|+|++|+++.++ ..+..+++|+.|+|+
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l---~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCc---ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 999999754 3677889999999999999976553 2234889999999999999999975 568999999999999
Q ss_pred cCCCcccc-ccccCC-CCCCEEeecCCC
Q 001020 880 RNNFERIP-TSIIHL-TNLFLLKLSYCE 905 (1187)
Q Consensus 880 ~n~l~~lp-~~l~~L-~~L~~L~L~~c~ 905 (1187)
+|+|+.++ ..+.++ ++|+.|+|++|+
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999775 467887 689999999976
No 54
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=2.9e-24 Score=211.06 Aligned_cols=132 Identities=19% Similarity=0.309 Sum_probs=92.7
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHhh--CCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCR--KNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLE 92 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~ 92 (1187)
..+.|||||||+++|+ .||+||+++|++ .|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|++|.||..
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 5578999999999995 589999999998 599999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCceEEeEEEEecccc----ccccccchhhHHHHHHHHhcCChHHHHHHHHHH
Q 001020 93 EIVKILECKNDKNIGQIVVPVFYRVDPSD----VRNQTGIFGDGFLKLEERFMEWPEKLESWRIAL 154 (1187)
Q Consensus 93 el~~~~~~~~~~~~~~~v~pvfy~vdp~~----vr~q~g~~~~~~~~~~~~~~~~~~~v~~wr~aL 154 (1187)
|+..|+.+... ..+ .|+||||+|++.+ +|....-... .++..|....+.|.+|++||
T Consensus 85 El~~al~~~~~-~~~-~vIpv~~~v~~~~lp~~Lr~~~~id~~---~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTEAPG-AEG-CTIPLLSGLSRAAYPPELRFMYYVDGR---GPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHTSSS-SSS-EEEEEECSCCGGGSCGGGGGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-cCC-cEEEEEcCCChhhCCHHHhCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence 99999998752 333 6779999998554 4554432211 12233333457788888764
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=231.47 Aligned_cols=264 Identities=19% Similarity=0.190 Sum_probs=158.3
Q ss_pred EEecCCCCCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcc
Q 001020 596 FHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLL 673 (1187)
Q Consensus 596 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 673 (1187)
.+.+++.++.+|..+. ++|++|++++|.+..++. .+..+++|++|+|++|.+....|. +.++++|++|+|++|. +.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CC
Confidence 4445555555554332 345555555555555443 344555555555555543333332 4444444444444432 22
Q ss_pred ccccc-ccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccch--hhhccC
Q 001020 674 EIHPS-IKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL--SIECLS 750 (1187)
Q Consensus 674 ~~~~~-i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~--~i~~l~ 750 (1187)
.++.. ++.+++|++|++++| .++.+|. .+..++
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n--------------------------------------------~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN--------------------------------------------PYKTLGETSLFSHLT 149 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC--------------------------------------------CCSSSCSSCSCTTCT
T ss_pred cCCHhHhCCCccCCEEECCCC--------------------------------------------CCcccCchhhhccCC
Confidence 22222 344444444444443 3333443 355566
Q ss_pred CCcEEeccCCCCCccc-ccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhh-hcCCCCCEEEc
Q 001020 751 RLITLNLENCSRLECL-SSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSI-VQLNNLYRLSF 828 (1187)
Q Consensus 751 ~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l-~~l~~L~~L~l 828 (1187)
+|+.|++++|..+..+ +..+.++++|++|++++|......|..+..+++|++|++++|.+..+|..+ ..+++|+.|++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 6666666666444433 345666777777777776655555667777777777777777777666543 34677777777
Q ss_pred cccCCCCcCCccCCCCCCCCCccEEeccCCCCCC-----cccccCCCCCCcEEECccCCCccccccc-cCCCCCCEEeec
Q 001020 829 ERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE-----LPNSLGQLSSLHILFRDRNNFERIPTSI-IHLTNLFLLKLS 902 (1187)
Q Consensus 829 ~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~lp~~l-~~L~~L~~L~L~ 902 (1187)
++|.........++.......++.++|+++.+.. +|..+..+++|+.|+|++|+++.+|..+ .++++|+.|+|+
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 7776554322223334456778888888888774 6778889999999999999999999874 899999999999
Q ss_pred CCC
Q 001020 903 YCE 905 (1187)
Q Consensus 903 ~c~ 905 (1187)
+|+
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 975
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=2.6e-24 Score=259.11 Aligned_cols=315 Identities=16% Similarity=0.167 Sum_probs=169.9
Q ss_pred CCeeEEEecCCCCC-----CCCCcc-cccccceEeCcCCCcccc-cccc-cccC----CccEEEcCCCCCCc----ccCC
Q 001020 591 SELKYFHWNGYPLK-----AMPSYI-HQENLIALEMPHSSVEKL-WGGA-QQLV----NLKYMDLSHSKQLT----EIPD 654 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~l-~~~~-~~l~----~L~~L~Ls~~~~l~----~~p~ 654 (1187)
++|++|++++|.+. .++..+ .+++|++|+|++|.+... +..+ ..++ +|++|+|++|.+.. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 35555555555554 223322 446666666666666532 1111 2233 56666666665442 2232
Q ss_pred -CCCCCCccEEecCCCCCcccccccc-----cCCCcccEEEccCccCCcc----cCccc-cccccceeeccccCCCCccc
Q 001020 655 -LSLASNIEKLNLDGCSSLLEIHPSI-----KYLNKLAILSLRHCKCIKS----LPTSI-HLESLKQLFLSGCSNLNTFP 723 (1187)
Q Consensus 655 -l~~l~~L~~L~L~~c~~l~~~~~~i-----~~L~~L~~L~L~~c~~l~~----lp~~~-~l~~L~~L~Ls~c~~l~~~~ 723 (1187)
+..+++|++|+|++|......+..+ ..+++|++|++++|..... ++..+ .+++|++|++++|......+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 5666666666666655322222211 2244566666666643221 12222 35666666666665322111
Q ss_pred ----c----cccccceEeecCccccc-----cchhhhccCCCcEEeccCCCCCcc----c-ccccCCCCCCCEEeccCCC
Q 001020 724 ----E----IACTIEELFLDGTAIEE-----LPLSIECLSRLITLNLENCSRLEC----L-SSSLCKLKSLQHLNLFGCT 785 (1187)
Q Consensus 724 ----~----~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----l-p~~l~~l~~L~~L~L~~~~ 785 (1187)
. ...+|+.|++++|.++. ++..+..+++|+.|+|++|..... + +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 1 12366677777776664 456666777777777777653322 1 1222356777777777764
Q ss_pred CCcc----CCcccCCcccccEEEcccCccccc-----chhhh-cCCCCCEEEccccCCCCcCCccCC-CCCCCCCccEEe
Q 001020 786 KVER----LPDEFGNLEALMEMKAVRSSIREL-----PSSIV-QLNNLYRLSFERYQGKSHMGLRLP-TMSGLRILTNLN 854 (1187)
Q Consensus 786 ~l~~----lp~~l~~l~~L~~L~l~~n~i~~l-----p~~l~-~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~ 854 (1187)
.... ++..+..+++|++|++++|.+... ...+. ..++|+.|++++|.........++ .+..+++|+.|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 3322 455566677777777777766522 12221 225777777777764432111111 144556777777
Q ss_pred ccCCCCCCc-c----cccC-CCCCCcEEECccCCCc-----cccccccCCCCCCEEeecCCC
Q 001020 855 LSDCGITEL-P----NSLG-QLSSLHILFRDRNNFE-----RIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 855 Ls~~~l~~l-~----~~l~-~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
|++|.+++. + ..+. ..++|+.|+|++|.++ .+|..+..+++|+.|+|++|+
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 777766642 1 2222 2567777777777776 566666667777777777764
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.8e-22 Score=226.54 Aligned_cols=217 Identities=22% Similarity=0.335 Sum_probs=142.5
Q ss_pred CeeEEEecCCCCCCCCCcc-cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 669 (1187)
.++.|+++++.+..+|..+ .+++|++|+|++|.+..+|..+..+++|++|+|++|.+. .+| .+.++++|++|+|++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 4555666666666666544 566666666666666666666666666666666666544 344 3556666666666665
Q ss_pred CCcccccccccC---------CCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccc
Q 001020 670 SSLLEIHPSIKY---------LNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAI 739 (1187)
Q Consensus 670 ~~l~~~~~~i~~---------L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i 739 (1187)
..+..+|..++. +++|++|++++|. +..+|..+ +++ +|++|+|++|.+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~---------------------~L~~L~L~~N~l 218 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQ---------------------NLKSLKIRNSPL 218 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCT---------------------TCCEEEEESSCC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCC---------------------CCCEEEccCCCC
Confidence 555555554433 4444444444443 22333322 233 345555555667
Q ss_pred cccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcc-cccchhhh
Q 001020 740 EELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSI-RELPSSIV 818 (1187)
Q Consensus 740 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i-~~lp~~l~ 818 (1187)
+.+|..+..+++|+.|+|++|.....+|..+..+++|++|+|++|...+.+|..+..+++|+.|++++|.+ ..+|..+.
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 77777788888888888888888888888888888888888888888888888888888888888888654 46777787
Q ss_pred cCCCCCEEEcccc
Q 001020 819 QLNNLYRLSFERY 831 (1187)
Q Consensus 819 ~l~~L~~L~l~~~ 831 (1187)
.+++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7777777777644
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.1e-21 Score=224.33 Aligned_cols=232 Identities=28% Similarity=0.390 Sum_probs=165.1
Q ss_pred ccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEc
Q 001020 612 QENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSL 690 (1187)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L 690 (1187)
..++++|+|++|.+..+|..+..+++|++|+|++|.+. .+|. ++.+++|++|+|++|. +..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 47899999999999999999999999999999999876 6665 8899999999999975 4488888999999999999
Q ss_pred cCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCccccccc
Q 001020 691 RHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSL 770 (1187)
Q Consensus 691 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 770 (1187)
++|..+..+|..+.- +.+.+ .-..+.+|+.|++++|.++.+|..++.+++|+.|+|++|... .+|..+
T Consensus 158 ~~n~~~~~~p~~~~~-----~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLAS-----TDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp EEETTCCCCCSCSEE-----EC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred CCCCCccccChhHhh-----ccchh------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 998888888765421 11110 011234566667777777788888888888888888887544 566677
Q ss_pred CCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc-ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCC
Q 001020 771 CKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR-ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRI 849 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~ 849 (1187)
..+++|++|+|++|.....+|..+..+++|+.|++++|.+. .+|..+ .++++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~---------------------------~~l~~ 278 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI---------------------------HRLTQ 278 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG---------------------------GGCTT
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh---------------------------hcCCC
Confidence 78888888888887777777777777777777776665433 333333 33444
Q ss_pred ccEEeccCCCCC-CcccccCCCCCCcEEECccCCCc
Q 001020 850 LTNLNLSDCGIT-ELPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 850 L~~L~Ls~~~l~-~l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
|+.|+|++|++. .+|..++.+++|+.+++..+.+.
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 555555554433 36666666666666666655443
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=6.8e-22 Score=224.60 Aligned_cols=247 Identities=18% Similarity=0.257 Sum_probs=206.7
Q ss_pred CCccEEecCCCCCcc--cccccccCCCcccEEEccC-ccCCcccCccc-cccccceeeccccCCCCcccccccccceEee
Q 001020 659 SNIEKLNLDGCSSLL--EIHPSIKYLNKLAILSLRH-CKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFL 734 (1187)
Q Consensus 659 ~~L~~L~L~~c~~l~--~~~~~i~~L~~L~~L~L~~-c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L 734 (1187)
.+++.|+|++|.... .+|..++.+++|++|++++ |.....+|..+ ++++|++|+|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~------------------- 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH------------------- 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-------------------
Confidence 578899999877665 7888889999999999985 55555667655 466666666655
Q ss_pred cCcccc-ccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcc-cccEEEcccCccc-
Q 001020 735 DGTAIE-ELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLE-ALMEMKAVRSSIR- 811 (1187)
Q Consensus 735 ~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~l~~n~i~- 811 (1187)
|.+. .+|..+..+++|++|+|++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|.+.
T Consensus 111 --n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 111 --TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp --ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred --CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 5565 6788899999999999999988878999999999999999999887778999999998 9999999999998
Q ss_pred ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCc-cccccc
Q 001020 812 ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFE-RIPTSI 890 (1187)
Q Consensus 812 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l 890 (1187)
.+|..+..++ |+.|++++|..... ....+..+++|+.|+|++|.++..+..+..+++|+.|+|++|.++ .+|..+
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGD---ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEEC---CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred cCChHHhCCc-ccEEECcCCcccCc---CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence 7888888887 99999999976543 223478899999999999999976666889999999999999998 889999
Q ss_pred cCCCCCCEEeecCCCCCCcCCCC--CCCCCeeeccccccccc
Q 001020 891 IHLTNLFLLKLSYCERLQSLPEL--PCNISDMDANCCTSLKE 930 (1187)
Q Consensus 891 ~~L~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~ 930 (1187)
..+++|+.|+|++|+-...+|.. .++|+.|++.+++.+..
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 99999999999998766677764 35677777777776544
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3e-20 Score=228.48 Aligned_cols=239 Identities=22% Similarity=0.270 Sum_probs=153.4
Q ss_pred cccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEccC
Q 001020 613 ENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRH 692 (1187)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~ 692 (1187)
.+++.|+++++.++.+|..+. ++|++|+|++|.+. .+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 457888888888888887665 68888888888643 4554 46777777777754 445554 556666666666
Q ss_pred ccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCC
Q 001020 693 CKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCK 772 (1187)
Q Consensus 693 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 772 (1187)
|. +..+|. .+++|++|++ ++|.++.+|.. +++|++|+|++|.. ..+|. .
T Consensus 111 N~-l~~l~~--~l~~L~~L~L---------------------~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~ 159 (622)
T 3g06_A 111 NP-LTHLPA--LPSGLCKLWI---------------------FGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA---L 159 (622)
T ss_dssp CC-CCCCCC--CCTTCCEEEC---------------------CSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC---C
T ss_pred Cc-CCCCCC--CCCCcCEEEC---------------------CCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC---c
Confidence 54 334443 3444555554 44555555542 25566666665532 23332 2
Q ss_pred CCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccE
Q 001020 773 LKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTN 852 (1187)
Q Consensus 773 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~ 852 (1187)
+++|+.|++++|. +..+| ..+++|+.|++++|.++.+|.. +++|+.|++++|.... +|. .+++|+.
T Consensus 160 ~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-----l~~--~~~~L~~ 225 (622)
T 3g06_A 160 PSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-----LPA--LPSGLKE 225 (622)
T ss_dssp CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-----CCC--CCTTCCE
T ss_pred cCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-----cCC--CCCCCCE
Confidence 3566666666643 33455 3456777777777777766653 3566777776665443 221 2467888
Q ss_pred EeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 001020 853 LNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPE 912 (1187)
Q Consensus 853 L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~ 912 (1187)
|+|++|.++.+| ..+++|+.|+|++|.|+.+|. .+++|+.|+|++| .+..+|.
T Consensus 226 L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 226 LIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCG
T ss_pred EEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCH
Confidence 888888888877 456788888888888888886 6778888888876 4556653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=2.2e-22 Score=229.28 Aligned_cols=258 Identities=16% Similarity=0.108 Sum_probs=133.8
Q ss_pred cceEeCcCCCcccccccc-cccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccC
Q 001020 615 LIALEMPHSSVEKLWGGA-QQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRH 692 (1187)
Q Consensus 615 L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~ 692 (1187)
+..++++.+.+...+..+ ..+++|+.|+|++|.+....|. +..+++|++|+|++|.... .++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEECcC
Confidence 444455555555444333 4556677777777765544443 6667777777777654332 222 66777777777776
Q ss_pred ccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccch-hhhccCCCcEEeccCCCCCccccccc-
Q 001020 693 CKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSSSL- 770 (1187)
Q Consensus 693 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l- 770 (1187)
|. +..++. .++|++|++++|......+..+.+|+.|++++|.++.++. .+..+++|+.|+|++|......+..+
T Consensus 90 n~-l~~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 90 NY-VQELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp SE-EEEEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred Cc-cccccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 65 333332 3556666666554433333344455555555555555533 45555555666665554444333333
Q ss_pred CCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCc
Q 001020 771 CKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRIL 850 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L 850 (1187)
..+++|++|++++|... .++. ...+++|++|++++|.++.+|.. +..+++|
T Consensus 166 ~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~~l~~~---------------------------~~~l~~L 216 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAFMGPE---------------------------FQSAAGV 216 (317)
T ss_dssp GGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCCEECGG---------------------------GGGGTTC
T ss_pred hccCcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCCcchhh---------------------------hcccCcc
Confidence 23455555555544321 1111 11233444444444433333322 2334445
Q ss_pred cEEeccCCCCCCcccccCCCCCCcEEECccCCCc--cccccccCCCCCCEEeecCCCCC
Q 001020 851 TNLNLSDCGITELPNSLGQLSSLHILFRDRNNFE--RIPTSIIHLTNLFLLKLSYCERL 907 (1187)
Q Consensus 851 ~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~L 907 (1187)
+.|+|++|.++.+|..+..+++|+.|+|++|.+. .+|.++..+++|+.|++.+|+.+
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 5555555555555655666666666666666665 45555556666666665554433
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=225.03 Aligned_cols=253 Identities=16% Similarity=0.181 Sum_probs=170.3
Q ss_pred CCCeeEEEecCCCCCCCCC-cc-cccccceEeCcCCCccccc-ccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEe
Q 001020 590 FSELKYFHWNGYPLKAMPS-YI-HQENLIALEMPHSSVEKLW-GGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLN 665 (1187)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 665 (1187)
+.+|++|++++|.+..+|. .+ .+++|++|++++|.+..++ ..+..+++|++|+|++|++....+. +.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4589999999999999987 34 8899999999999999885 5689999999999999987654444 89999999999
Q ss_pred cCCCCCcccccc--cccCCCcccEEEccCccCCcccCc-cc-cccccceeeccccCCCCcccccccccceEeecCccccc
Q 001020 666 LDGCSSLLEIHP--SIKYLNKLAILSLRHCKCIKSLPT-SI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEE 741 (1187)
Q Consensus 666 L~~c~~l~~~~~--~i~~L~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~ 741 (1187)
|++|. +..+|. .+..+++|++|++++|..+..++. .+ ++++|++|++++ |.+..
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~ 188 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA---------------------SDLQS 188 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE---------------------TTCCE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC---------------------CCcCc
Confidence 99975 556665 688899999999998865555542 23 355555555554 33443
Q ss_pred c-chhhhccCCCcEEeccCCCCCcccccc-cCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhc
Q 001020 742 L-PLSIECLSRLITLNLENCSRLECLSSS-LCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQ 819 (1187)
Q Consensus 742 l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~ 819 (1187)
+ |..+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|......+..+.. ...
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~~~ 247 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------GET 247 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------C
T ss_pred cCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccccc--------------------ccc
Confidence 3 45566777777777777654 333332 334666777777665543322221110 112
Q ss_pred CCCCCEEEccccCCCCcCCccCC-CCCCCCCccEEeccCCCCCCccccc-CCCCCCcEEECccCCCcc
Q 001020 820 LNNLYRLSFERYQGKSHMGLRLP-TMSGLRILTNLNLSDCGITELPNSL-GQLSSLHILFRDRNNFER 885 (1187)
Q Consensus 820 l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~~~l~~l~~~l-~~l~~L~~L~L~~n~l~~ 885 (1187)
...++.+++.++.........+| .+..+++|+.|+|++|+++.+|..+ +.+++|+.|+|++|.+..
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 23344444444332211000111 2456677888888888888888764 788999999999988763
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=5.4e-20 Score=219.63 Aligned_cols=239 Identities=21% Similarity=0.287 Sum_probs=132.6
Q ss_pred cceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCc
Q 001020 615 LIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHC 693 (1187)
Q Consensus 615 L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c 693 (1187)
...++..+..++.+|.++. ++|+.|+|++|.+....+. |.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4455556666666665543 4666666666665444433 666666666666665433333345666666666666665
Q ss_pred cCCcccCc-cc-cccccceeeccccCCCCcccccccccceEeecCccccccch-hhhccCCCcEEeccCCCCCccccc-c
Q 001020 694 KCIKSLPT-SI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSS-S 769 (1187)
Q Consensus 694 ~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~ 769 (1187)
. +..+|. .+ ++++|++|+|++ |.++.+|. .+..+++|+.|+|++|+.+..++. .
T Consensus 123 ~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 123 R-LTTIPNGAFVYLSKLKELWLRN---------------------NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp C-CSSCCTTTSCSCSSCCEEECCS---------------------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred c-CCeeCHhHhhccccCceeeCCC---------------------CcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence 4 333332 12 233333333333 33444433 345566666666666555554443 3
Q ss_pred cCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCC
Q 001020 770 LCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRI 849 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~ 849 (1187)
+.++++|++|+|++|. +..+|. +..+++|+.|++++|.++.++ ...+.++++
T Consensus 181 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~--------------------------~~~~~~l~~ 232 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIR--------------------------PGSFQGLMH 232 (440)
T ss_dssp TTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCEEC--------------------------TTTTTTCTT
T ss_pred hhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCccC--------------------------hhhhccCcc
Confidence 4555555555555542 233332 444444444444444444332 123556666
Q ss_pred ccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCC
Q 001020 850 LTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 850 L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
|+.|+|++|.++.+ +..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 77777777777664 3456677777777777777777765 35677777777777764
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=9.1e-23 Score=245.57 Aligned_cols=336 Identities=17% Similarity=0.129 Sum_probs=245.6
Q ss_pred CCCeeEEEecCCCCCCCCCc--c-cccccceEeCcCCCcc-----cccccccccCCccEEEcCCCCCCcccC-C-CCCCC
Q 001020 590 FSELKYFHWNGYPLKAMPSY--I-HQENLIALEMPHSSVE-----KLWGGAQQLVNLKYMDLSHSKQLTEIP-D-LSLAS 659 (1187)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~~--~-~~~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~ 659 (1187)
+++|+.|+++++.+...+.. + .+++|++|+|++|.+. .++..+..+++|++|+|++|.+....+ . ...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45688888888887665422 2 6789999999999988 457778889999999999998654333 1 22333
Q ss_pred ----CccEEecCCCCCcc----cccccccCCCcccEEEccCccCCcccCccc------cccccceeeccccCCCCcc---
Q 001020 660 ----NIEKLNLDGCSSLL----EIHPSIKYLNKLAILSLRHCKCIKSLPTSI------HLESLKQLFLSGCSNLNTF--- 722 (1187)
Q Consensus 660 ----~L~~L~L~~c~~l~----~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~------~l~~L~~L~Ls~c~~l~~~--- 722 (1187)
+|++|+|++|.... .++..+..+++|++|++++|......+..+ ..++|++|++++|......
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999987542 567889999999999999988432222211 2457999999999654422
Q ss_pred -ccc---ccccceEeecCccccccch-hhh-----ccCCCcEEeccCCCCCcc----cccccCCCCCCCEEeccCCCCCc
Q 001020 723 -PEI---ACTIEELFLDGTAIEELPL-SIE-----CLSRLITLNLENCSRLEC----LSSSLCKLKSLQHLNLFGCTKVE 788 (1187)
Q Consensus 723 -~~~---~~~L~~L~L~~~~i~~lp~-~i~-----~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~l~ 788 (1187)
+.. ..+|+.|++++|.+..... .+. ..++|+.|+|++|..... ++..+..+++|++|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 222 3689999999999875322 222 356999999999876552 67778889999999999985432
Q ss_pred c----C-CcccCCcccccEEEcccCcccc-----cchhhhcCCCCCEEEccccCCCCcCCccCCC--CCCCCCccEEecc
Q 001020 789 R----L-PDEFGNLEALMEMKAVRSSIRE-----LPSSIVQLNNLYRLSFERYQGKSHMGLRLPT--MSGLRILTNLNLS 856 (1187)
Q Consensus 789 ~----l-p~~l~~l~~L~~L~l~~n~i~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~l~~L~~L~Ls 856 (1187)
. + +..+..+++|++|++++|.++. ++..+..+++|+.|++++|.........+.. ....++|+.|+|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2 1 2233468899999999999986 7888888999999999998753321111111 1234689999999
Q ss_pred CCCCCC-----cccccCCCCCCcEEECccCCCccc-c----ccccC-CCCCCEEeecCCCCCC-----cCCCC---CCCC
Q 001020 857 DCGITE-----LPNSLGQLSSLHILFRDRNNFERI-P----TSIIH-LTNLFLLKLSYCERLQ-----SLPEL---PCNI 917 (1187)
Q Consensus 857 ~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l-p----~~l~~-L~~L~~L~L~~c~~L~-----~lp~l---~~sL 917 (1187)
+|.++. ++..+..+++|+.|+|++|.++.. + ..+.. .++|+.|+|++|. +. .+|.. .++|
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCc
Confidence 999885 466677889999999999998743 2 22332 7899999999984 44 45532 4689
Q ss_pred Ceeeccccc
Q 001020 918 SDMDANCCT 926 (1187)
Q Consensus 918 ~~L~i~~C~ 926 (1187)
+.|++++|+
T Consensus 401 ~~L~l~~N~ 409 (461)
T 1z7x_W 401 RELDLSNNC 409 (461)
T ss_dssp CEEECCSSS
T ss_pred cEEECCCCC
Confidence 999998884
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=5.6e-20 Score=220.31 Aligned_cols=239 Identities=23% Similarity=0.309 Sum_probs=129.1
Q ss_pred cceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCc
Q 001020 615 LIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHC 693 (1187)
Q Consensus 615 L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c 693 (1187)
...++.++..+..+|.++. ++|++|+|++|.+....|. |.++++|++|+|++|......+..+..+++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3445555555555555442 4566666666655444443 566666666666665433333345566666666666665
Q ss_pred cCCcccCcc-c-cccccceeeccccCCCCcccccccccceEeecCccccccch-hhhccCCCcEEeccCCCCCccccc-c
Q 001020 694 KCIKSLPTS-I-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSS-S 769 (1187)
Q Consensus 694 ~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~ 769 (1187)
. +..+|.. + ++++|++|+|++ |.++.+|. .+..+++|+.|+|++|+.+..++. .
T Consensus 134 ~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 134 W-LTVIPSGAFEYLSKLRELWLRN---------------------NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp C-CSBCCTTTSSSCTTCCEEECCS---------------------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred c-CCccChhhhcccCCCCEEECCC---------------------CCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 4 3333321 2 233343333333 33444443 355666777777776666655553 3
Q ss_pred cCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCC
Q 001020 770 LCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRI 849 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~ 849 (1187)
+.++++|+.|+|++|. +..+| .+..+++|+.|++++|.++.++. ..+.++++
T Consensus 192 ~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~~l~~ 243 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPEIRP--------------------------GSFHGLSS 243 (452)
T ss_dssp TTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSCCSEECG--------------------------GGGTTCTT
T ss_pred ccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCcCcccCc--------------------------ccccCccC
Confidence 5566666666666643 23333 24455555555555555554421 12445555
Q ss_pred ccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCC
Q 001020 850 LTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 850 L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
|+.|+|++|.+..+ +..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 66666666666553 3445666667777777766666654 34566667777766653
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.6e-20 Score=219.17 Aligned_cols=236 Identities=21% Similarity=0.238 Sum_probs=168.2
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccc-cccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKL-WGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
..+.++..+..+..+|..+ +.+|++|+|++|+|..+ +..+.++++|+.|+|++|.+....+. |.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3456777777888888765 36888999999998887 45678899999999998877665554 888899999999987
Q ss_pred CCccccc-ccccCCCcccEEEccCccCCcccCc-cc-cccccceeeccccCCCCcccc----cccccceEeecCcccccc
Q 001020 670 SSLLEIH-PSIKYLNKLAILSLRHCKCIKSLPT-SI-HLESLKQLFLSGCSNLNTFPE----IACTIEELFLDGTAIEEL 742 (1187)
Q Consensus 670 ~~l~~~~-~~i~~L~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~~~~----~~~~L~~L~L~~~~i~~l 742 (1187)
.. ..++ ..++.+++|++|+|++|. +..+|. .+ ++++|++|++++|+.+..++. .+.+|+.|+|++|.++.+
T Consensus 134 ~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 134 WL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred cC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 64 4444 457888999999998887 445554 34 588899999988877776654 234677777777777777
Q ss_pred chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchh-hhcCC
Q 001020 743 PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSS-IVQLN 821 (1187)
Q Consensus 743 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~-l~~l~ 821 (1187)
|. +..+++|+.|+|++|......|..+.++++|+.|+|++|......+..+..+++|+.|++++|.++.+|.. +..++
T Consensus 212 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 63 66777777777777766666667777777777777777665555566677777777777777777666542 23344
Q ss_pred CCCEEEcccc
Q 001020 822 NLYRLSFERY 831 (1187)
Q Consensus 822 ~L~~L~l~~~ 831 (1187)
+|+.|++++|
T Consensus 291 ~L~~L~L~~N 300 (452)
T 3zyi_A 291 YLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEccCC
Confidence 4444444443
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=8.1e-20 Score=218.15 Aligned_cols=236 Identities=23% Similarity=0.275 Sum_probs=161.5
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCccccc-ccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLW-GGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
..+.++..+..+..+|..+ ..+++.|+|++|+|..++ ..+.++++|++|+|++|.+....+. |.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3456777777888888765 367888888888888876 5678888888888888876555443 888888888888886
Q ss_pred CCcccccc-cccCCCcccEEEccCccCCcccCc-cc-cccccceeeccccCCCCcccc----cccccceEeecCcccccc
Q 001020 670 SSLLEIHP-SIKYLNKLAILSLRHCKCIKSLPT-SI-HLESLKQLFLSGCSNLNTFPE----IACTIEELFLDGTAIEEL 742 (1187)
Q Consensus 670 ~~l~~~~~-~i~~L~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~~~~----~~~~L~~L~L~~~~i~~l 742 (1187)
. +..++. .+..+++|++|+|++|. +..+|. .+ ++++|++|+|++|+.+..++. .+.+|+.|+|++|.++.+
T Consensus 123 ~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 123 R-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp C-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred c-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 5 444544 68888888889888877 444444 34 588888888888777666553 234566777777777766
Q ss_pred chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchh-hhcCC
Q 001020 743 PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSS-IVQLN 821 (1187)
Q Consensus 743 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~-l~~l~ 821 (1187)
|. +..+++|+.|+|++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++|.++.+|.. +..++
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 63 66667777777777665555566666777777777776655555555666666666666666666655542 23344
Q ss_pred CCCEEEcccc
Q 001020 822 NLYRLSFERY 831 (1187)
Q Consensus 822 ~L~~L~l~~~ 831 (1187)
+|+.|++++|
T Consensus 280 ~L~~L~L~~N 289 (440)
T 3zyj_A 280 HLERIHLHHN 289 (440)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEcCCC
Confidence 4444444333
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=5.7e-20 Score=208.24 Aligned_cols=237 Identities=22% Similarity=0.274 Sum_probs=112.8
Q ss_pred EEEecCCCCCCCCCcccccccceEeCcCCCccccccc-ccccCCccEEEcCCCCCCccc---CCCCCCCCccEEecCCCC
Q 001020 595 YFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEI---PDLSLASNIEKLNLDGCS 670 (1187)
Q Consensus 595 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~c~ 670 (1187)
.++++++.++.+|..+ +++|++|+|++|.+..+|.. +..+++|++|+|++|.+.... +.+..+++|++|+|++|.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4555666666666543 24566666666666655544 355556666666555433211 123334444444444432
Q ss_pred CcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccch--hhhc
Q 001020 671 SLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPL--SIEC 748 (1187)
Q Consensus 671 ~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~--~i~~ 748 (1187)
+..+|..+..+++|++|++++|. ++.++. .+..
T Consensus 90 -i~~l~~~~~~l~~L~~L~l~~n~--------------------------------------------l~~~~~~~~~~~ 124 (306)
T 2z66_A 90 -VITMSSNFLGLEQLEHLDFQHSN--------------------------------------------LKQMSEFSVFLS 124 (306)
T ss_dssp -EEEEEEEEETCTTCCEEECTTSE--------------------------------------------EESSTTTTTTTT
T ss_pred -cccChhhcCCCCCCCEEECCCCc--------------------------------------------ccccccchhhhh
Confidence 22333334444444444444332 232221 3444
Q ss_pred cCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCc-cCCcccCCcccccEEEcccCccccc-chhhhcCCCCCEE
Q 001020 749 LSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVE-RLPDEFGNLEALMEMKAVRSSIREL-PSSIVQLNNLYRL 826 (1187)
Q Consensus 749 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~n~i~~l-p~~l~~l~~L~~L 826 (1187)
+++|+.|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|.++.+ |..+.
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------- 196 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-------- 196 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--------
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--------
Confidence 5555555555554444444445555555555555544332 2445555555555555555555444 22333
Q ss_pred EccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-ccCCCCCCcEEECccCCCccc-cccccCCC-CCCEEeecC
Q 001020 827 SFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-SLGQLSSLHILFRDRNNFERI-PTSIIHLT-NLFLLKLSY 903 (1187)
Q Consensus 827 ~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~-~L~~L~L~~ 903 (1187)
.+++|+.|+|++|.++.++. .+..+++|+.|+|++|.++.. |..+..++ +|+.|+|++
T Consensus 197 -------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 197 -------------------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp -------------------TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred -------------------CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 33444444444444444332 344455555555555555432 23444442 555555555
Q ss_pred C
Q 001020 904 C 904 (1187)
Q Consensus 904 c 904 (1187)
|
T Consensus 258 N 258 (306)
T 2z66_A 258 N 258 (306)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=2.5e-20 Score=208.89 Aligned_cols=199 Identities=20% Similarity=0.214 Sum_probs=113.3
Q ss_pred eEEEecCCCCCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCC
Q 001020 594 KYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 671 (1187)
+.++.+++.+..+|..+ +++|++|++++|.+..++. .+..+++|++|+|++|.+....|. +.++++|++|+|++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45667777777777654 4677788888887777764 467777777777777765555443 77777777777777654
Q ss_pred cccc-cccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccchh-hhc
Q 001020 672 LLEI-HPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLS-IEC 748 (1187)
Q Consensus 672 l~~~-~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~ 748 (1187)
+..+ +..+..+++|++|++++|......|..+ ++++|++|++++ |.++.++.. +..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD---------------------NALQALPDDTFRD 151 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS---------------------SCCCCCCTTTTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC---------------------CcccccCHhHhcc
Confidence 4444 4556677777777777665333223322 244444444443 334444332 445
Q ss_pred cCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccc
Q 001020 749 LSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELP 814 (1187)
Q Consensus 749 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp 814 (1187)
+++|+.|+|++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.++.++
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 555555555555333222233455555555555555444333444445555555555555444444
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.4e-20 Score=224.93 Aligned_cols=231 Identities=17% Similarity=0.132 Sum_probs=131.1
Q ss_pred CccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccc
Q 001020 637 NLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSG 715 (1187)
Q Consensus 637 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 715 (1187)
+|+.|+|++|.+....|. |+.+++|++|+|++|......| ++.+++|++|+|++|. +..+|. .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEECcC
Confidence 555555555554443332 5555555555555544322222 5556666666666554 333332 24555555555
Q ss_pred cCCCCcccccccccceEeecCcccccc-chhhhccCCCcEEeccCCCCCcccccccC-CCCCCCEEeccCCCCCccCCcc
Q 001020 716 CSNLNTFPEIACTIEELFLDGTAIEEL-PLSIECLSRLITLNLENCSRLECLSSSLC-KLKSLQHLNLFGCTKVERLPDE 793 (1187)
Q Consensus 716 c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~ 793 (1187)
|......+..+.+|+.|+|++|.++.+ |..++.+++|+.|+|++|......|..+. .+++|+.|+|++|.... +|.
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~- 186 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG- 186 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc-
Confidence 544433334445566666666666655 33566667777777776665555555554 56666666666654322 222
Q ss_pred cCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCC
Q 001020 794 FGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSL 873 (1187)
Q Consensus 794 l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L 873 (1187)
...+++|+.|++++|.++.+|+. +..+++|+.|+|++|.++.+|..+..+++|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~---------------------------~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPE---------------------------FQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGG---------------------------GGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred cccCCCCCEEECCCCCCCCCCHh---------------------------HcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 22355555555555555555443 334455666666666666677667777777
Q ss_pred cEEECccCCCc--cccccccCCCCCCEEeec
Q 001020 874 HILFRDRNNFE--RIPTSIIHLTNLFLLKLS 902 (1187)
Q Consensus 874 ~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~ 902 (1187)
+.|+|++|.+. .+|.++..++.|+.|++.
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777776 566666777777766665
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=6.3e-21 Score=216.60 Aligned_cols=243 Identities=17% Similarity=0.154 Sum_probs=173.2
Q ss_pred cccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCC-ccccccccc-------CCCcccEEEccCccCCcccCccc
Q 001020 633 QQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSS-LLEIHPSIK-------YLNKLAILSLRHCKCIKSLPTSI 703 (1187)
Q Consensus 633 ~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~-l~~~~~~i~-------~L~~L~~L~L~~c~~l~~lp~~~ 703 (1187)
..+++|+.|++++|.+ .+|. +... |+.|+|++|.. ...+|..+. .+++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4566677777777765 4443 3322 66777766543 123343333 56666666666665444444432
Q ss_pred ---cccccceeeccccCCCCcccccccccceEeecCccccccchhhhcc-----CCCcEEeccCCCCCcccccccCCCCC
Q 001020 704 ---HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECL-----SRLITLNLENCSRLECLSSSLCKLKS 775 (1187)
Q Consensus 704 ---~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~ 775 (1187)
.++ +|++|+|++|.++.+|..++.+ ++|++|+|++|......|..+..+++
T Consensus 116 ~~~~l~---------------------~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 116 LEATGP---------------------DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SSCCSC---------------------CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHhcCC---------------------CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 244 4555555566677667666666 88888888888776666678888889
Q ss_pred CCEEeccCCCCCcc--CCccc--CCcccccEEEcccCcccccch----hhhcCCCCCEEEccccCCCCcCCccCCCCCCC
Q 001020 776 LQHLNLFGCTKVER--LPDEF--GNLEALMEMKAVRSSIRELPS----SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGL 847 (1187)
Q Consensus 776 L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~l~~n~i~~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l 847 (1187)
|++|++++|...+. +|..+ ..+++|++|++++|.++.++. .+..+++|+.|++++|...... ..+.+..+
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l 252 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--GAPSCDWP 252 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--CCSCCCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--chhhhhhc
Confidence 99999988875543 23333 788899999999998885442 3357789999999998766531 12346678
Q ss_pred CCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 848 RILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 848 ~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
++|+.|+|++|.++.+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 999999999999999998776 899999999999999987 8999999999999875
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.3e-21 Score=218.49 Aligned_cols=263 Identities=14% Similarity=0.076 Sum_probs=187.4
Q ss_pred CCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeecc
Q 001020 636 VNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLS 714 (1187)
Q Consensus 636 ~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls 714 (1187)
..++.++++.+.+...++. +..+++|++|+|++|......|..++.+++|++|+|++|... ..+....+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEEETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchhhhhcCCCCEEECc
Confidence 3456667777664333333 566789999999997655555567899999999999988743 33333356666666666
Q ss_pred ccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCccc
Q 001020 715 GCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEF 794 (1187)
Q Consensus 715 ~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 794 (1187)
+| .++.++ ..++|+.|++++|......+ ..+++|++|++++|......+..+
T Consensus 89 ~n---------------------~l~~l~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 89 NN---------------------YVQELL----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp SS---------------------EEEEEE----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCT
T ss_pred CC---------------------cccccc----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhh
Confidence 64 444443 23566667766665433322 235677777777766555555567
Q ss_pred CCcccccEEEcccCcccccc-hhh-hcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCC
Q 001020 795 GNLEALMEMKAVRSSIRELP-SSI-VQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSS 872 (1187)
Q Consensus 795 ~~l~~L~~L~l~~n~i~~lp-~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~ 872 (1187)
..+++|++|++++|.++.++ ..+ ..+++|+.|++++|..... +....+++|+.|+|++|.++.+|..+..+++
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-----ECCCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-----ccccccccCCEEECCCCcCCcchhhhcccCc
Confidence 77778888888888877654 333 3678888888888876542 3344688999999999999999988999999
Q ss_pred CcEEECccCCCccccccccCCCCCCEEeecCCCCC-CcCCCC---CCCCCeeeccccccccccc
Q 001020 873 LHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERL-QSLPEL---PCNISDMDANCCTSLKELS 932 (1187)
Q Consensus 873 L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L-~~lp~l---~~sL~~L~i~~C~~L~~l~ 932 (1187)
|+.|+|++|.++.+|..+..+++|+.|+|++|+.. ..+|.. .++|+.|++.+|..++...
T Consensus 216 L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred ccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 99999999999999999999999999999998754 344432 3467777777777666543
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.9e-19 Score=203.95 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=130.0
Q ss_pred CCCeeEEEecCCCCCCCCCcc--cccccceEeCcCCCcccc---cccccccCCccEEEcCCCCCCcccCCCCCCCCccEE
Q 001020 590 FSELKYFHWNGYPLKAMPSYI--HQENLIALEMPHSSVEKL---WGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKL 664 (1187)
Q Consensus 590 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 664 (1187)
+.+|++|++++|.+..+|... .+++|++|+|++|.+..+ +..+..+++|++|+|++|.+....+.+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 468999999999999999863 889999999999999866 566778999999999999866544458999999999
Q ss_pred ecCCCCCccccc--ccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccc
Q 001020 665 NLDGCSSLLEIH--PSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEE 741 (1187)
Q Consensus 665 ~L~~c~~l~~~~--~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~ 741 (1187)
++++|.. ..++ ..+..+++|++|++++|......+..+ ++++|++|++++| .+..
T Consensus 107 ~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~ 164 (306)
T 2z66_A 107 DFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN---------------------SFQE 164 (306)
T ss_dssp ECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC---------------------EEGG
T ss_pred ECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC---------------------cccc
Confidence 9999754 4444 468888899999998877544444433 3555555555543 3332
Q ss_pred --cchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc
Q 001020 742 --LPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR 811 (1187)
Q Consensus 742 --lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~ 811 (1187)
+|..+..+++|+.|+|++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 3444444555555555554443333444444444445544444332222223444444444444444443
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.9e-19 Score=201.65 Aligned_cols=223 Identities=20% Similarity=0.190 Sum_probs=121.5
Q ss_pred cceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCc
Q 001020 615 LIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHC 693 (1187)
Q Consensus 615 L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c 693 (1187)
-++++.+++.++.+|.++ .++|+.|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888888888755 46888888888876655544 778888888888876544444566777777777777776
Q ss_pred cCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCC
Q 001020 694 KCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKL 773 (1187)
Q Consensus 694 ~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 773 (1187)
..+..++. ..+..+++|+.|++++|......|..+..+
T Consensus 91 ~~l~~~~~------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 91 AQLRSVDP------------------------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTCCCCCT------------------------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCccccCH------------------------------------------HHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 53443321 123333444444444443333333444455
Q ss_pred CCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccE
Q 001020 774 KSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTN 852 (1187)
Q Consensus 774 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~ 852 (1187)
++|++|++++|......+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|..... ....+..+++|+.
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV---HPHAFRDLGRLMT 205 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc---CHhHccCcccccE
Confidence 555555555544333233335555555555555555555443 233444444444444332221 1112344455555
Q ss_pred EeccCCCCCCccc-ccCCCCCCcEEECccCCCc
Q 001020 853 LNLSDCGITELPN-SLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 853 L~Ls~~~l~~l~~-~l~~l~~L~~L~L~~n~l~ 884 (1187)
|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred eeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5555555555442 2455555555555555443
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.4e-20 Score=233.96 Aligned_cols=365 Identities=15% Similarity=0.065 Sum_probs=233.5
Q ss_pred cccCcccceEEEecCCCCCCCCceeccCCccc-cCCCeeEEEecCCCCC---CCCCcc-cccccceEeCcCCCcccc---
Q 001020 557 FIKMHKLRFLKFYNSVDGEHKNKVHHFQGLDY-VFSELKYFHWNGYPLK---AMPSYI-HQENLIALEMPHSSVEKL--- 628 (1187)
Q Consensus 557 f~~m~~Lr~L~l~~~~~~~~~~~~~~~~~l~~-l~~~Lr~L~l~~~~l~---~lp~~~-~~~~L~~L~L~~~~i~~l--- 628 (1187)
+..+++|+.|+++++.+.+ .....+.. .+.+|++|++.+|... .++... .+++|++|+|++|.+...
T Consensus 108 ~~~~~~L~~L~L~~~~i~~-----~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSD-----LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHCTTCCEEEEESCBCCH-----HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred HhhCCCCCeEEeeccEecH-----HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 3477889999988763311 01111111 2235888888887621 111111 568899999998876532
Q ss_pred --cccccccCCccEEEcCCCCCC----cccCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCc---c
Q 001020 629 --WGGAQQLVNLKYMDLSHSKQL----TEIPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIK---S 698 (1187)
Q Consensus 629 --~~~~~~l~~L~~L~Ls~~~~l----~~~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~---~ 698 (1187)
+.....+++|+.|+|++|... ..++. +.++++|++|+|++|. +..++..+..+++|+.|+++.+.... .
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 233467888999999888764 22222 5678899999999865 44577778888899999987643321 1
Q ss_pred cCccc-cccccceeeccccCCCCcccc---cccccceEeecCccccc--cchhhhccCCCcEEeccCCCCCcccccccCC
Q 001020 699 LPTSI-HLESLKQLFLSGCSNLNTFPE---IACTIEELFLDGTAIEE--LPLSIECLSRLITLNLENCSRLECLSSSLCK 772 (1187)
Q Consensus 699 lp~~~-~l~~L~~L~Ls~c~~l~~~~~---~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 772 (1187)
.+..+ .+++|+.|+++++. ...+|. ...+|++|+|++|.++. ++..+..+++|+.|+++++.....++.....
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 22222 47788888887752 333343 34578889998888653 3334678889999988854333344444567
Q ss_pred CCCCCEEeccC----------CCCCcc--CCcccCCcccccEEEcccCcccc-cchhhhc-CCCCCEEEccccC---CCC
Q 001020 773 LKSLQHLNLFG----------CTKVER--LPDEFGNLEALMEMKAVRSSIRE-LPSSIVQ-LNNLYRLSFERYQ---GKS 835 (1187)
Q Consensus 773 l~~L~~L~L~~----------~~~l~~--lp~~l~~l~~L~~L~l~~n~i~~-lp~~l~~-l~~L~~L~l~~~~---~~~ 835 (1187)
+++|++|++++ |..+.. ++.....+++|++|++..+.++. .+..+.. +++|+.|+++++. ..+
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 88899999984 555432 22334557888889887777763 3334444 8889999887543 222
Q ss_pred cCC--ccCCC-CCCCCCccEEeccCCC--CCC-ccccc-CCCCCCcEEECccCCCc--cccccccCCCCCCEEeecCCCC
Q 001020 836 HMG--LRLPT-MSGLRILTNLNLSDCG--ITE-LPNSL-GQLSSLHILFRDRNNFE--RIPTSIIHLTNLFLLKLSYCER 906 (1187)
Q Consensus 836 ~~~--~~l~~-l~~l~~L~~L~Ls~~~--l~~-l~~~l-~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~L~~c~~ 906 (1187)
... ..++. +.++++|+.|+|++|. +++ .+..+ ..+++|+.|+|++|+++ .++..+..+++|+.|+|++|+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-
Confidence 100 00111 4557889999998664 453 22222 45788999999988886 356566788899999999887
Q ss_pred CCc--CCC---CCCCCCeeeccccccccc
Q 001020 907 LQS--LPE---LPCNISDMDANCCTSLKE 930 (1187)
Q Consensus 907 L~~--lp~---l~~sL~~L~i~~C~~L~~ 930 (1187)
+.. ++. -.++|+.|++++|. ++.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 432 222 24688999999887 443
No 76
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.79 E-value=1.8e-20 Score=187.36 Aligned_cols=101 Identities=15% Similarity=0.289 Sum_probs=91.4
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHhhC--CCcEEEeC-CCCCCCcchHHHHHhhc-cccEEEEEecCCcccchhHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSHLYAALCRK--NIETFIDN-QLIRGDEISPALLDAIG-GSKISVIIFSEGYASSRWCL 91 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~~c~ 91 (1187)
..+.|||||||+++| ..||.+|+++|+++ |+++|+|+ |+.+|+.|.++|.+||+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 357899999999999 68999999999985 69999999 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhccccCCCceEEeEEEEecc
Q 001020 92 EEIVKILECKNDKNIGQIVVPVFYRVDP 119 (1187)
Q Consensus 92 ~el~~~~~~~~~~~~~~~v~pvfy~vdp 119 (1187)
.|+..|+++... ..+++|+||||+.-+
T Consensus 91 ~El~~a~~~~~~-~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPG-AHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTT-HHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHc-cCCCEEEEEEEcccc
Confidence 999999987641 345689999998753
No 77
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.2e-20 Score=234.83 Aligned_cols=172 Identities=12% Similarity=0.030 Sum_probs=75.5
Q ss_pred ccCCccEEEcCCCCCCcc----cCC-CCCCCCccEEecCCCCCc----ccccccccCCCcccEEEccCccCCcccCccc-
Q 001020 634 QLVNLKYMDLSHSKQLTE----IPD-LSLASNIEKLNLDGCSSL----LEIHPSIKYLNKLAILSLRHCKCIKSLPTSI- 703 (1187)
Q Consensus 634 ~l~~L~~L~Ls~~~~l~~----~p~-l~~l~~L~~L~L~~c~~l----~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~- 703 (1187)
.+++|++|+|++|.+... ++. +..+++|++|+|++|... ..++..+.++++|+.|++++|. +..+|..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHh
Confidence 455555555555543221 111 234455555555554322 2233334455555555555544 22333333
Q ss_pred cccccceeeccccCCCCc---cc---ccccccceEeecCccccccchhhhccCCCcEEeccCCCCCc-ccccccCCCCCC
Q 001020 704 HLESLKQLFLSGCSNLNT---FP---EIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLE-CLSSSLCKLKSL 776 (1187)
Q Consensus 704 ~l~~L~~L~Ls~c~~l~~---~~---~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L 776 (1187)
++++|++|+++++..... .+ ..+.+|+.|.+.++....+|..+..+++|++|+|++|.... .++..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 355555555554222111 00 11234555555555444555555555555555555554211 111224455555
Q ss_pred CEEeccCCCCCccCCcccCCcccccEEEcc
Q 001020 777 QHLNLFGCTKVERLPDEFGNLEALMEMKAV 806 (1187)
Q Consensus 777 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 806 (1187)
++|+++++-....++.....+++|++|+++
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 555555321112222223344555555555
No 78
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.78 E-value=1.2e-20 Score=186.89 Aligned_cols=101 Identities=18% Similarity=0.328 Sum_probs=90.2
Q ss_pred CCCcccEEEcccccccccchHHH-HHHHHhhC--CCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSH-LYAALCRK--NIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCL 91 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 91 (1187)
..+.|||||||+++|+ .||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-ccccCCCceEEeEEEE-eccc
Q 001020 92 EEIVKILEC-KNDKNIGQIVVPVFYR-VDPS 120 (1187)
Q Consensus 92 ~el~~~~~~-~~~~~~~~~v~pvfy~-vdp~ 120 (1187)
.|+..|+.+ .+ ..++.|+||||+ +++.
T Consensus 80 ~El~~a~~~~~~--~~~~~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 80 YELDFSHFRLFD--ENNDAAILILLEPIEKK 108 (149)
T ss_dssp HHSCCSCCTTCG--GGTTCCEEEESSCCCTT
T ss_pred HHHHHHHHHHHh--cCCCEEEEEEecCCChh
Confidence 999999853 34 566789999985 4443
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=5.1e-19 Score=213.26 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=161.9
Q ss_pred CCCCccEEecCCCCCcccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecC
Q 001020 657 LASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDG 736 (1187)
Q Consensus 657 ~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~ 736 (1187)
.+++|++|+|++|......|..++.+++|++|+|++|..... +....+++|++|+|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-------------------- 90 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNN-------------------- 90 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EECTTCTTCCEEECCSS--------------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cccccCCCCCEEEecCC--------------------
Confidence 566899999999876555567899999999999999874333 33335666666666664
Q ss_pred ccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc-ch
Q 001020 737 TAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL-PS 815 (1187)
Q Consensus 737 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~ 815 (1187)
.++.+|. .++|+.|++++|......+. .+++|+.|+|++|......|..++.+++|+.|++++|.++.+ |.
T Consensus 91 -~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 91 -YVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp -EEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred -cCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 4444432 25666666666654443332 356777777777766655566677777788888888877753 44
Q ss_pred hhh-cCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCC
Q 001020 816 SIV-QLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLT 894 (1187)
Q Consensus 816 ~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~ 894 (1187)
.+. .+++|+.|++++|..... +....+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-----ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHhhhCCcccEEecCCCccccc-----cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCC
Confidence 454 678888888888775542 44556899999999999999998889999999999999999999999999999
Q ss_pred CCCEEeecCCCCC
Q 001020 895 NLFLLKLSYCERL 907 (1187)
Q Consensus 895 ~L~~L~L~~c~~L 907 (1187)
+|+.|++++|+..
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 9999999998754
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=7.3e-20 Score=207.82 Aligned_cols=239 Identities=20% Similarity=0.176 Sum_probs=124.6
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCccc--cccccc-------ccCCccEEEcCCCCCCcccCC-C--CCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEK--LWGGAQ-------QLVNLKYMDLSHSKQLTEIPD-L--SLAS 659 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~-l--~~l~ 659 (1187)
+|+.|++.+|.+ .+|..+. ..|+.|+|++|.+.. ++..+. ++++|++|+|++|.+...+|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 455556666666 5555432 126666666666643 333222 455666666666655544443 2 4555
Q ss_pred CccEEecCCCCCcccccccccCC-----CcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEee
Q 001020 660 NIEKLNLDGCSSLLEIHPSIKYL-----NKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFL 734 (1187)
Q Consensus 660 ~L~~L~L~~c~~l~~~~~~i~~L-----~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L 734 (1187)
+|++|+|++|.. ...|..++.+ ++|++|++++|.
T Consensus 122 ~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~---------------------------------------- 160 (312)
T 1wwl_A 122 DLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAH---------------------------------------- 160 (312)
T ss_dssp CCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCS----------------------------------------
T ss_pred CccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCC----------------------------------------
Confidence 555555555432 2224433333 444444444443
Q ss_pred cCccccccc-hhhhccCCCcEEeccCCCCCcc--ccccc--CCCCCCCEEeccCCCCCc--cCC-cccCCcccccEEEcc
Q 001020 735 DGTAIEELP-LSIECLSRLITLNLENCSRLEC--LSSSL--CKLKSLQHLNLFGCTKVE--RLP-DEFGNLEALMEMKAV 806 (1187)
Q Consensus 735 ~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~L~~~~~l~--~lp-~~l~~l~~L~~L~l~ 806 (1187)
+..++ ..++.+++|+.|+|++|..... +|..+ ..+++|++|++++|.... .++ ..+..+++|+.|+++
T Consensus 161 ----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 161 ----SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp ----CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred ----CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 33333 3344444555555554443322 12222 445555555555543221 111 122344555555555
Q ss_pred cCcccccc--hhhhcCCCCCEEEccccCCCCcCCccCCC-CCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCC
Q 001020 807 RSSIRELP--SSIVQLNNLYRLSFERYQGKSHMGLRLPT-MSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNF 883 (1187)
Q Consensus 807 ~n~i~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l 883 (1187)
+|.++..+ ..+..+++|+.|++++|.... +|. +. ++|+.|+|++|+++.+|. +..+++|+.|+|++|.+
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 55555433 233345556666665555432 222 22 678888999998888876 88889999999999887
Q ss_pred cc
Q 001020 884 ER 885 (1187)
Q Consensus 884 ~~ 885 (1187)
+.
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 81
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.78 E-value=4.4e-20 Score=187.37 Aligned_cols=101 Identities=17% Similarity=0.305 Sum_probs=86.5
Q ss_pred CCCcccEEEcccccccccchHHH-HHHHHhh--CCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcccchhHH
Q 001020 16 PEAKYDVFLSFRGEDTRDNFTSH-LYAALCR--KNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCL 91 (1187)
Q Consensus 16 ~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 91 (1187)
..+.|||||||+++| ..||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|++|.||+
T Consensus 32 ~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 568899999999999 489985 9999998 899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCceEEeEEEEecc
Q 001020 92 EEIVKILECKNDKNIGQIVVPVFYRVDP 119 (1187)
Q Consensus 92 ~el~~~~~~~~~~~~~~~v~pvfy~vdp 119 (1187)
.|+..|+.+... ..++.|+||||+--|
T Consensus 110 ~El~~a~~~~~~-~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 110 YEFYFAHHNLFH-ENSDHIILILLEPIP 136 (178)
T ss_dssp THHHHTTCC--------CEEEEESSCCC
T ss_pred HHHHHHHHHHHh-cCCCEEEEEEecCCC
Confidence 999999975431 567789999987433
No 82
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.77 E-value=7.9e-20 Score=182.53 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=90.2
Q ss_pred CcccEEEccccccc---------ccchHHHHHH-HHh-hCCCcEEEeC-CCCCCCcchHHHHHhhccccEEEEEecCCcc
Q 001020 18 AKYDVFLSFRGEDT---------RDNFTSHLYA-ALC-RKNIETFIDN-QLIRGDEISPALLDAIGGSKISVIIFSEGYA 85 (1187)
Q Consensus 18 ~~~dvFis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 85 (1187)
+.|||||||+++|+ ++.||.++.. .|+ +.|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 4679999665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhHHHHHHHHHHhccccCCCceEEeEEEEeccc
Q 001020 86 -SSRWCLEEIVKILECKNDKNIGQIVVPVFYRVDPS 120 (1187)
Q Consensus 86 -~s~~c~~el~~~~~~~~~~~~~~~v~pvfy~vdp~ 120 (1187)
.|.||..|+..++.+.-. ..++.|+||||+-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~-~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLV-TGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHH-TTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHh-cCCCEEEEEEeccccc
Confidence 999999999999988632 5678999999876554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.8e-17 Score=180.33 Aligned_cols=208 Identities=17% Similarity=0.242 Sum_probs=165.0
Q ss_pred cCCCCcccccccccceEeecCccccccch-hhhccCCCcEEeccCCCCCcccc-cccCCCCCCCEEeccCCCCCccCC-c
Q 001020 716 CSNLNTFPEIACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLS-SSLCKLKSLQHLNLFGCTKVERLP-D 792 (1187)
Q Consensus 716 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp-~ 792 (1187)
|..+..+|....+++.|++++|.++.+|. .+..+++|+.|++++|..+..++ ..+.++++|++|++++|+.+..++ .
T Consensus 20 c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp ECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 33466667655578899999999998887 68899999999999987565555 478899999999999855555555 5
Q ss_pred ccCCcccccEEEcccCcccccchhhhcCCCCC---EEEcccc-CCCCcCCccCCCCCCCCCcc-EEeccCCCCCCccccc
Q 001020 793 EFGNLEALMEMKAVRSSIRELPSSIVQLNNLY---RLSFERY-QGKSHMGLRLPTMSGLRILT-NLNLSDCGITELPNSL 867 (1187)
Q Consensus 793 ~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~l~~~l 867 (1187)
.+..+++|++|++++|.++.+|. +..+++|+ .|++++| ..... ....+.++++|+ .|++++|+++.+|...
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i---~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSI---PVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEE---CTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhc---CcccccchhcceeEEEcCCCCCcccCHhh
Confidence 78899999999999999999887 78888888 9999998 44331 122378899999 9999999999988766
Q ss_pred CCCCCCcEEECccC-CCccccc-cccCC-CCCCEEeecCCCCCCcCCC-CCCCCCeeeccccccc
Q 001020 868 GQLSSLHILFRDRN-NFERIPT-SIIHL-TNLFLLKLSYCERLQSLPE-LPCNISDMDANCCTSL 928 (1187)
Q Consensus 868 ~~l~~L~~L~L~~n-~l~~lp~-~l~~L-~~L~~L~L~~c~~L~~lp~-l~~sL~~L~i~~C~~L 928 (1187)
...++|+.|+|++| .++.+|. .+.++ ++|+.|+|++ +.++.+|. .+++|+.|++.++..|
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCTTCTTCSEEECTTC---
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChhHhccCceeeccCccCC
Confidence 55589999999999 4998865 67888 9999999998 45677774 4678888888887654
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=6.3e-17 Score=181.21 Aligned_cols=59 Identities=27% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCccEEeccCCCCCCcccc-cCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 847 LRILTNLNLSDCGITELPNS-LGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 847 l~~L~~L~Ls~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
+++|+.|+|++|+++.+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 34444455555555554433 244555556666555555555555555566666665543
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.6e-17 Score=190.00 Aligned_cols=211 Identities=23% Similarity=0.297 Sum_probs=147.4
Q ss_pred eEEEecCCCCCCCCCcccccccceEeCcCCCccccccc-ccccCCccEEEcCCCCCCcccCC--CCCCCCccEEecCCCC
Q 001020 594 KYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEIPD--LSLASNIEKLNLDGCS 670 (1187)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~ 670 (1187)
+.++.+++.++++|..+ +.++++|+|++|+|+.+|.+ +.++++|++|+|++|+++..+|. |.++++|+++.+.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45777888899999876 57899999999999999875 79999999999999998887774 8899998876665556
Q ss_pred Ccccc-cccccCCCcccEEEccCccCCcccCccc--cccccceeeccccCCCCccccc-----ccccceEeecCcccccc
Q 001020 671 SLLEI-HPSIKYLNKLAILSLRHCKCIKSLPTSI--HLESLKQLFLSGCSNLNTFPEI-----ACTIEELFLDGTAIEEL 742 (1187)
Q Consensus 671 ~l~~~-~~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~~~~~-----~~~L~~L~L~~~~i~~l 742 (1187)
.+..+ |..+..+++|++|++++|. +..+|... ...++..|++.++..+..++.. ...++.|+|++|.|+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 66666 4568999999999999987 45555433 4666777777776665554431 12244444444444444
Q ss_pred chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCc-ccCCcccccEEEcccCcccccchhhhcCC
Q 001020 743 PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPD-EFGNLEALMEMKAVRSSIRELPSSIVQLN 821 (1187)
Q Consensus 743 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~n~i~~lp~~l~~l~ 821 (1187)
|. ......+|++|++++++.++.+|. .|..+++|+.|++++|.|+.+|.. .+.
T Consensus 170 ~~------------------------~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~ 223 (350)
T 4ay9_X 170 HN------------------------SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLE 223 (350)
T ss_dssp CT------------------------TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCT
T ss_pred Ch------------------------hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhc
Confidence 44 334445566666665556666654 467777788888888887777753 244
Q ss_pred CCCEEEccccC
Q 001020 822 NLYRLSFERYQ 832 (1187)
Q Consensus 822 ~L~~L~l~~~~ 832 (1187)
+|+.|.+.++.
T Consensus 224 ~L~~L~~l~~~ 234 (350)
T 4ay9_X 224 NLKKLRARSTY 234 (350)
T ss_dssp TCCEEECTTCT
T ss_pred cchHhhhccCC
Confidence 55555554443
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=9.2e-17 Score=178.83 Aligned_cols=136 Identities=22% Similarity=0.225 Sum_probs=89.7
Q ss_pred hhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCc-cCCcccCCcccccEEEcccCcccccch-hhhcCCCC
Q 001020 746 IECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVE-RLPDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNL 823 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L 823 (1187)
+..+++|+.|++++|......+..+..+++|++|++++|.... .+|..+..+++|+.|++++|.++.++. .+..++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-- 173 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-- 173 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh--
Confidence 3344445555555444333333346667777777777765443 357777777777777777777776543 222222
Q ss_pred CEEEccccCCCCcCCccCCCCCCCCCcc-EEeccCCCCCCcccccCCCCCCcEEECccCCCcccccc-ccCCCCCCEEee
Q 001020 824 YRLSFERYQGKSHMGLRLPTMSGLRILT-NLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTS-IIHLTNLFLLKL 901 (1187)
Q Consensus 824 ~~L~l~~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L 901 (1187)
.++.|. .|++++|.+..++.......+|+.|+|++|.++.+|.. +..+++|+.|+|
T Consensus 174 ----------------------~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 174 ----------------------QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp ----------------------TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred ----------------------hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 223333 68888888887776666666899999999988888764 578899999999
Q ss_pred cCCC
Q 001020 902 SYCE 905 (1187)
Q Consensus 902 ~~c~ 905 (1187)
++|+
T Consensus 232 ~~N~ 235 (276)
T 2z62_A 232 HTNP 235 (276)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 8865
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.6e-19 Score=224.56 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCeeEEEecCC-CCCC--CCCcc-cccccceEeCcCCCccc-----ccccccccCCccEEEcCCCCCCcccC-----C-C
Q 001020 591 SELKYFHWNGY-PLKA--MPSYI-HQENLIALEMPHSSVEK-----LWGGAQQLVNLKYMDLSHSKQLTEIP-----D-L 655 (1187)
Q Consensus 591 ~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~-l 655 (1187)
++|+.|++.+| .+.. ++... .+++|++|+|++|.+.. ++.....+++|+.|+|++|. ..++ . +
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~ 207 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLV 207 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHH
Confidence 35555555555 2222 22222 44555555555555432 22222344555555555553 1111 1 1
Q ss_pred CCCCCccEEecCCCCCcccccccccCCCcccEEEccCc
Q 001020 656 SLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHC 693 (1187)
Q Consensus 656 ~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c 693 (1187)
..+++|++|+|++|..+..++..+..+++|+.|++..|
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 23455555555555444444445555555555554443
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.1e-16 Score=178.35 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred EEecCCCCCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcc
Q 001020 596 FHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLL 673 (1187)
Q Consensus 596 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 673 (1187)
.+..+..+..+|..+ +.+|++|++++|.+..++. .+..+++|++|+|++|.+....+. +.++++|++|+|++|....
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344555566666654 3567788888888777765 567778888888888765544443 7777777777777765444
Q ss_pred cccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccc--cchhhhccC
Q 001020 674 EIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEE--LPLSIECLS 750 (1187)
Q Consensus 674 ~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~--lp~~i~~l~ 750 (1187)
..+..+..+++|++|++++|......+..+ ++++|++|++++ |.++. +|..+..++
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH---------------------NLIQSFKLPEYFSNLT 149 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS---------------------SCCCCCCCCGGGGGCT
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC---------------------CccceecCchhhccCC
Confidence 444567777777777777665322222122 244444444433 33333 344555555
Q ss_pred CCcEEeccCCCCCcccccccCCCCCCC----EEeccCCCCCccCCcccCCcccccEEEcccCcccccc
Q 001020 751 RLITLNLENCSRLECLSSSLCKLKSLQ----HLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELP 814 (1187)
Q Consensus 751 ~L~~L~L~~~~~l~~lp~~l~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp 814 (1187)
+|+.|+|++|......+..+..+++|+ .|++++|... .++.......+|+.|++++|.++.+|
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCCcccEEECCCCceeecC
Confidence 555555555544333333333333333 4444443322 22222222234444444444444443
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=3.1e-19 Score=221.98 Aligned_cols=399 Identities=16% Similarity=0.115 Sum_probs=245.9
Q ss_pred cccccCcccceEEEecCCCCCCCCceec-c-----------CCccccCCCeeEEEecCCCCCCCC-Ccc--cccccceEe
Q 001020 555 QTFIKMHKLRFLKFYNSVDGEHKNKVHH-F-----------QGLDYVFSELKYFHWNGYPLKAMP-SYI--HQENLIALE 619 (1187)
Q Consensus 555 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~-~-----------~~l~~l~~~Lr~L~l~~~~l~~lp-~~~--~~~~L~~L~ 619 (1187)
..+.++++|+.|++.++.... .... + ..+....++|+.|+++++.+.... ..+ .+++|++|+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~---~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFA---DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGG---GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHhhCCCceEEeccCCCchh---hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 356677889999998753110 0000 0 011223468999999998755321 222 578999999
Q ss_pred CcCC-Cccc--ccccccccCCccEEEcCCCCCCcc----cCC-CCCCCCccEEecCCCC-Cc--ccccccccCCCcccEE
Q 001020 620 MPHS-SVEK--LWGGAQQLVNLKYMDLSHSKQLTE----IPD-LSLASNIEKLNLDGCS-SL--LEIHPSIKYLNKLAIL 688 (1187)
Q Consensus 620 L~~~-~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~l~~L~~L~L~~c~-~l--~~~~~~i~~L~~L~~L 688 (1187)
|++| .+.. ++.....+++|++|+|++|.+... ++. ...+++|++|+|++|. .+ ..++..+..+++|++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 9988 5554 455556899999999999974332 222 3478899999999986 11 1122224567999999
Q ss_pred EccCccCCcccCccc-cccccceeeccccCCC------Cccc---ccccccceE-eecCccccccchhhhccCCCcEEec
Q 001020 689 SLRHCKCIKSLPTSI-HLESLKQLFLSGCSNL------NTFP---EIACTIEEL-FLDGTAIEELPLSIECLSRLITLNL 757 (1187)
Q Consensus 689 ~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l------~~~~---~~~~~L~~L-~L~~~~i~~lp~~i~~l~~L~~L~L 757 (1187)
++++|..+..+|..+ ++++|++|+++.|..- ..++ ....+|+.| .+.+.....++..+..+++|+.|+|
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEEC
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEc
Confidence 999997777766665 5899999998776431 1111 123356666 4555555566666678888999999
Q ss_pred cCCCCCcc-cccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEccc---------Ccccc--cchhhhcCCCCCE
Q 001020 758 ENCSRLEC-LSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVR---------SSIRE--LPSSIVQLNNLYR 825 (1187)
Q Consensus 758 ~~~~~l~~-lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~---------n~i~~--lp~~l~~l~~L~~ 825 (1187)
++|..... ++..+..+++|++|++++|.....++.....+++|++|++.+ +.++. +......+++|+.
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 88873222 333456788899999988722122233334577888888833 33431 2222235788888
Q ss_pred EEccccCCCCcCCccCCCC-CCCCCccEEecc--C----CCCCCcc------cccCCCCCCcEEECccCCCcc-cccccc
Q 001020 826 LSFERYQGKSHMGLRLPTM-SGLRILTNLNLS--D----CGITELP------NSLGQLSSLHILFRDRNNFER-IPTSII 891 (1187)
Q Consensus 826 L~l~~~~~~~~~~~~l~~l-~~l~~L~~L~Ls--~----~~l~~l~------~~l~~l~~L~~L~L~~n~l~~-lp~~l~ 891 (1187)
|.+..+.... ..+..+ ..+++|+.|+|+ + +.+++.| ..+..+++|+.|+|++ .++. .+..+.
T Consensus 377 L~~~~~~l~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 377 VLYFCRQMTN---AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp EEEEESCCCH---HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHhcCCcCH---HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 8664443322 111122 247888999998 3 4555433 2256678999999977 5542 223343
Q ss_pred -CCCCCCEEeecCCCCCCc-CC---CCCCCCCeeecccccccccccCCccccCCCCCCCCceeeecCCCCChHHHHHH
Q 001020 892 -HLTNLFLLKLSYCERLQS-LP---ELPCNISDMDANCCTSLKELSGLSILFTPTTWNSQGLNFINCFNLDGDELKEI 964 (1187)
Q Consensus 892 -~L~~L~~L~L~~c~~L~~-lp---~l~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~~L~~~~~~~i 964 (1187)
.+++|+.|+|++|..-.. ++ .-.++|+.|++++|+- .... .. ......+.++.|++.+|.. +....+.+
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~-~~-~~~~~l~~L~~L~l~~~~~-~~~~~~~l 526 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKA-LL-ANASKLETMRSLWMSSCSV-SFGACKLL 526 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHH-HH-HTGGGGGGSSEEEEESSCC-BHHHHHHH
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHH-HH-HHHHhCCCCCEEeeeCCCC-CHHHHHHH
Confidence 388899999998762111 11 1256899999999974 2211 00 0112246788899999976 55544443
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.5e-16 Score=174.70 Aligned_cols=176 Identities=23% Similarity=0.287 Sum_probs=110.4
Q ss_pred cccceEeecCccccccch-hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEc
Q 001020 727 CTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKA 805 (1187)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 805 (1187)
.+++.|++++|.++.++. .+..+++|++|+|++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 356666666676776664 4667777777777776544333334566777777777776544433445667777777777
Q ss_pred ccCcccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-ccCCCCCCcEEECccCCC
Q 001020 806 VRSSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-SLGQLSSLHILFRDRNNF 883 (1187)
Q Consensus 806 ~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~l~~l~~L~~L~L~~n~l 883 (1187)
++|.++.++. .+..+++|+.|++++|..... ....+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL---PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCcc---CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 7777776654 345666666666666654431 11125566667777777777666554 356667777777777777
Q ss_pred ccccc-cccCCCCCCEEeecCCC
Q 001020 884 ERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 884 ~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
+.+|. .+..+++|+.|+|++|+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCHHHhccccCCCEEEecCCC
Confidence 66665 35666667777766654
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.6e-16 Score=176.13 Aligned_cols=189 Identities=22% Similarity=0.206 Sum_probs=123.5
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCc
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSS 809 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~ 809 (1187)
+.++++++.++.+|..+. ++|+.|+|++|......+..+..+++|+.|+|++|.. ..++.. ..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEECCSSC
T ss_pred cEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEECCCCc
Confidence 333334444444444332 4555555555554444445555666666666665432 233322 556666677777776
Q ss_pred ccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccc-cCCCCCCcEEECccCCCccccc
Q 001020 810 IRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNS-LGQLSSLHILFRDRNNFERIPT 888 (1187)
Q Consensus 810 i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~lp~ 888 (1187)
++.+|..+..+++|+.|++++|..... ....+.++++|+.|+|++|.++.+|.. +..+++|+.|+|++|+++.+|.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCC---CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCcCchhhccCCCCCEEECCCCcCccc---CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 666666666677777777776665432 122377888999999999999987754 5789999999999999999987
Q ss_pred c-ccCCCCCCEEeecCCCCCCcCCCC---CCCCCeeeccccc
Q 001020 889 S-IIHLTNLFLLKLSYCERLQSLPEL---PCNISDMDANCCT 926 (1187)
Q Consensus 889 ~-l~~L~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i~~C~ 926 (1187)
. +..+++|+.|+|++| .++.+|.. .++|+.|++.+++
T Consensus 166 ~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 5 578999999999985 57777752 2356667666543
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=4.1e-18 Score=195.64 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=47.7
Q ss_pred cceEeCcCCCccccccccccc--CCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCccc-ccccccCCCcccEEEcc
Q 001020 615 LIALEMPHSSVEKLWGGAQQL--VNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLE-IHPSIKYLNKLAILSLR 691 (1187)
Q Consensus 615 L~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~-~~~~i~~L~~L~~L~L~ 691 (1187)
++.|+++++.+. +..+..+ ++|+.|++++|.+....+.+..+++|++|+|++|..... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 344444444443 2233334 555566665555444444455556666666665542222 44445555566666665
Q ss_pred CccCCcccCccc-cccccceeecccc
Q 001020 692 HCKCIKSLPTSI-HLESLKQLFLSGC 716 (1187)
Q Consensus 692 ~c~~l~~lp~~~-~l~~L~~L~Ls~c 716 (1187)
+|......+..+ .+++|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCC
Confidence 554222222222 2444444444443
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.4e-16 Score=172.65 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=61.7
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
.++.++++++.++.+|..+. .+|++|+|++|++..++. .+..+++|++|+|++|.+....+. |..+++|++|+|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 45566777777777776542 567777777777776654 466677777777777664433333 466666777776665
Q ss_pred CCcccccccccCCCcccEEEccCcc
Q 001020 670 SSLLEIHPSIKYLNKLAILSLRHCK 694 (1187)
Q Consensus 670 ~~l~~~~~~i~~L~~L~~L~L~~c~ 694 (1187)
......+..+..+++|++|++++|.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred cCCcCCHhHcccccCCCEEECCCCc
Confidence 4322222334556666666666554
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=183.59 Aligned_cols=203 Identities=18% Similarity=0.133 Sum_probs=140.1
Q ss_pred CcccEEEccCccCCcccCccc---cccccceeeccccCCCCcccccccccceEeecCccccccc-hhhhccCCCcEEecc
Q 001020 683 NKLAILSLRHCKCIKSLPTSI---HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELP-LSIECLSRLITLNLE 758 (1187)
Q Consensus 683 ~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 758 (1187)
++|++|++++|......|..+ .+++|++|+|++|......+. ++ ..+..+++|++|+|+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-----------------~~~~~~~~~~~L~~L~Ls 153 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-----------------LAELQQWLKPGLKVLSIA 153 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-----------------HHHHHTTBCSCCCEEEEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-----------------hHHHHhhhccCCCEEEee
Confidence 446666666665444444442 355555555555443221110 11 234467888888888
Q ss_pred CCCCCcccccccCCCCCCCEEeccCCCCCcc--C--CcccCCcccccEEEcccCcccccchh----hhcCCCCCEEEccc
Q 001020 759 NCSRLECLSSSLCKLKSLQHLNLFGCTKVER--L--PDEFGNLEALMEMKAVRSSIRELPSS----IVQLNNLYRLSFER 830 (1187)
Q Consensus 759 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~--l--p~~l~~l~~L~~L~l~~n~i~~lp~~----l~~l~~L~~L~l~~ 830 (1187)
+|......|..+..+++|++|+|++|..... + +..+..+++|++|++++|.++.++.. +..+++|+.|++++
T Consensus 154 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 154 QAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred CCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 8877666667788888888888888765432 2 23346788888888988888766652 46778888898888
Q ss_pred cCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 831 YQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 831 ~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
|.........+..+..+++|++|+|++|+++.+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 87655322222223344799999999999999888764 799999999999998875 7888999999999875
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=2.2e-18 Score=201.96 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=128.5
Q ss_pred cceEeCcCCCcccccccccccCCccEEEcCCCCCCcccC-----CCCCCCCccEEecCCCCC--c-cccccc-------c
Q 001020 615 LIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIP-----DLSLASNIEKLNLDGCSS--L-LEIHPS-------I 679 (1187)
Q Consensus 615 L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~c~~--l-~~~~~~-------i 679 (1187)
|+...+....+..++..+..+++|+.|+|++|.+....+ .+..+++|++|+|++|.. + ..+|.. +
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333444455555666667777778888887776544322 255667777777776521 1 122332 2
Q ss_pred cCCCcccEEEccCccCCc----ccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccchhhhcc-----
Q 001020 680 KYLNKLAILSLRHCKCIK----SLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECL----- 749 (1187)
Q Consensus 680 ~~L~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l----- 749 (1187)
..+++|++|+|++|.... .+|..+ ++++|++|+|++|.... .....++..+..+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~----------------~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP----------------QAGAKIARALQELAVNKK 154 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH----------------HHHHHHHHHHHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH----------------HHHHHHHHHHHHHhhhhh
Confidence 556666666666655322 122222 23444444444332100 0001222223333
Q ss_pred ----CCCcEEeccCCCCC-cccc---cccCCCCCCCEEeccCCCCCc-----cCCcccCCcccccEEEcccCcc-----c
Q 001020 750 ----SRLITLNLENCSRL-ECLS---SSLCKLKSLQHLNLFGCTKVE-----RLPDEFGNLEALMEMKAVRSSI-----R 811 (1187)
Q Consensus 750 ----~~L~~L~L~~~~~l-~~lp---~~l~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~l~~n~i-----~ 811 (1187)
++|++|+|++|... ..+| ..+..+++|++|++++|.... ..|..+..+++|+.|++++|.+ .
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 55555555555443 2222 234445555555555543221 1122334444444444444444 2
Q ss_pred ccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC-----ccccc--CCCCCCcEEECccCCCc
Q 001020 812 ELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE-----LPNSL--GQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 812 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-----l~~~l--~~l~~L~~L~L~~n~l~ 884 (1187)
.+|.. +..+++|+.|+|++|.++. ++..+ +.+++|+.|+|++|.++
T Consensus 235 ~l~~~---------------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 235 ALAIA---------------------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHH---------------------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHH---------------------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 22322 4455666667777777664 35555 34778888888888887
Q ss_pred c-----ccccc-cCCCCCCEEeecCCC
Q 001020 885 R-----IPTSI-IHLTNLFLLKLSYCE 905 (1187)
Q Consensus 885 ~-----lp~~l-~~L~~L~~L~L~~c~ 905 (1187)
. +|..+ .++++|+.|+|++|+
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 6 77766 567888888888765
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3e-16 Score=177.41 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=34.1
Q ss_pred cCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc
Q 001020 794 FGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN 865 (1187)
Q Consensus 794 l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~ 865 (1187)
+..+++|+.|++++|.++.++. +..+++|+.|++++|..... +.+..+++|+.|+|++|.++..|.
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~-----~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV-----SPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC-----GGGTTCTTCCEEEEEEEEEECCCE
T ss_pred hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc-----ccccCCCCCCEEEccCCeeecCCe
Confidence 4444444444444444444443 44455555555555544331 124556667777777776655443
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=4.3e-16 Score=176.15 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=101.8
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSS 671 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 671 (1187)
+|+.|++.++.+..+|....+++|++|++++|.+..++. +..+++|++|+|++|.+ ..++.+..+++|++|+|++|.
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~- 118 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ- 118 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC-
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCC-
Confidence 455666666666666654466677777777777766665 66677777777777653 334556666666666666654
Q ss_pred cccccccccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCC
Q 001020 672 LLEIHPSIKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSR 751 (1187)
Q Consensus 672 l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 751 (1187)
+..++. +..+++|++|++++|. +..++....+++|++|++ ++|.++.++. +..+++
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l---------------------~~n~l~~~~~-l~~l~~ 174 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSI---------------------GNAQVSDLTP-LANLSK 174 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEEC---------------------CSSCCCCCGG-GTTCTT
T ss_pred CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEc---------------------cCCcCCCChh-hcCCCC
Confidence 333332 5566666666666554 233332112333333333 3334444443 455555
Q ss_pred CcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccc
Q 001020 752 LITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELP 814 (1187)
Q Consensus 752 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp 814 (1187)
|+.|++++|... .++. +..+++|++|++++|... .++ .+..+++|+.|++++|.++..|
T Consensus 175 L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 175 LTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCEEECCCCccC-cChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCeeecCC
Confidence 555555554332 2221 445555555555554322 222 2455555555555555554443
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=2.1e-16 Score=175.37 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred hhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCE
Q 001020 746 IECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYR 825 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~ 825 (1187)
+..+++|+.|+|++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.++.++..
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------- 199 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG--------- 199 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH---------
Confidence 34445555555555433322233345555555555555543333333445555666666666655544432
Q ss_pred EEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCc-cccccccCCC
Q 001020 826 LSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFE-RIPTSIIHLT 894 (1187)
Q Consensus 826 L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~ 894 (1187)
.+..+++|+.|+|++|.+. +.+++|+.|++..|.++ .+|.++..++
T Consensus 200 -----------------~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 200 -----------------VFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -----------------TTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -----------------HHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 1334444555555555432 23456666666666665 5666555443
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.4e-17 Score=191.18 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=68.1
Q ss_pred cccceEeCcCCCcccccccccccCCccEEEcCCCCCCcc-cCC-CCCCCCccEEecCCCCCcccccccccCCCcccEEEc
Q 001020 613 ENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTE-IPD-LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSL 690 (1187)
Q Consensus 613 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L 690 (1187)
.+++.|++++|.+...+..+..+++|++|+|++|.+... +|. +..+++|++|+|++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 667777777777776666666677777777777764433 443 667777777777777654456666777777888888
Q ss_pred cCccCCcc--cCccc-cccccceeecccc
Q 001020 691 RHCKCIKS--LPTSI-HLESLKQLFLSGC 716 (1187)
Q Consensus 691 ~~c~~l~~--lp~~~-~l~~L~~L~Ls~c 716 (1187)
++|..+.. ++..+ ++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 77754442 44333 3566666666655
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=6.3e-16 Score=178.30 Aligned_cols=235 Identities=19% Similarity=0.167 Sum_probs=134.5
Q ss_pred ceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCcccccc-cccCCCcccEEEccCc
Q 001020 616 IALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSLLEIHP-SIKYLNKLAILSLRHC 693 (1187)
Q Consensus 616 ~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~~~-~i~~L~~L~~L~L~~c 693 (1187)
++++.++++++++|.++ .++|+.|+|++|++....++ |.++++|++|+|++|..+..+|. .+.++++|+.+.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777788888888766 35788888888765433333 67777777777777765555553 3556666555443333
Q ss_pred cCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCC
Q 001020 694 KCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKL 773 (1187)
Q Consensus 694 ~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 773 (1187)
..+..++. ..+..+++|+.|++++|......+..+...
T Consensus 90 N~l~~l~~------------------------------------------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 90 NNLLYINP------------------------------------------EAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp TTCCEECT------------------------------------------TSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred CcccccCc------------------------------------------hhhhhccccccccccccccccCCchhhccc
Confidence 33433322 123334444444444433322222233344
Q ss_pred CCCCEEeccCCCCCccCCc-ccCCc-ccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCcc
Q 001020 774 KSLQHLNLFGCTKVERLPD-EFGNL-EALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILT 851 (1187)
Q Consensus 774 ~~L~~L~L~~~~~l~~lp~-~l~~l-~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~ 851 (1187)
.++..|++.++..+..++. .+..+ ..|+.|++++|.|+.+|....... +|+
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~---------------------------~L~ 180 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT---------------------------QLD 180 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE---------------------------EEE
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc---------------------------chh
Confidence 4555666655555555443 33444 357778888888777766543333 345
Q ss_pred EEeccC-CCCCCccc-ccCCCCCCcEEECccCCCccccccccCCCCCCEEeecCCCCCCcCCCC--CCCCCeeecc
Q 001020 852 NLNLSD-CGITELPN-SLGQLSSLHILFRDRNNFERIPTSIIHLTNLFLLKLSYCERLQSLPEL--PCNISDMDAN 923 (1187)
Q Consensus 852 ~L~Ls~-~~l~~l~~-~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~ 923 (1187)
.|++++ |.++.+|. .+..+++|+.|+|++|+|+.+|.. .+.+|+.|.+.+|++++.+|.+ .++|+.+++.
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 555543 44555654 346667777777777777777653 3566677777777777777743 2455555553
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.8e-16 Score=169.03 Aligned_cols=205 Identities=18% Similarity=0.222 Sum_probs=133.3
Q ss_pred CCCCCCcccccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccC--CCCCCCCccEEecCCCCCccccc-cc
Q 001020 603 LKAMPSYIHQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIP--DLSLASNIEKLNLDGCSSLLEIH-PS 678 (1187)
Q Consensus 603 l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~~-~~ 678 (1187)
++.+|. -+.+|++|++++|+++.++. .+..+++|++|+|++|+.+..++ .|.++++|++|+|++|+.+..++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 667776 34578888888888888876 56788888888888886444444 37788888888888744555555 45
Q ss_pred ccCCCcccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCc-cccccchh-hhccCCCc-EE
Q 001020 679 IKYLNKLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGT-AIEELPLS-IECLSRLI-TL 755 (1187)
Q Consensus 679 i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~-~i~~lp~~-i~~l~~L~-~L 755 (1187)
+..+++|++|++++|. +..+|....+++|+ .|+.|++++| .++.+|.. +..+++|+ .|
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTD------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCC------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred hCCCCCCCEEeCCCCC-Cccccccccccccc------------------cccEEECCCCcchhhcCcccccchhcceeEE
Confidence 7778888888888776 44466522344444 0124444444 55555543 66677777 77
Q ss_pred eccCCCCCcccccccCCCCCCCEEeccCCCCCccC-CcccCCc-ccccEEEcccCcccccchhhhcCCCCCEEEcccc
Q 001020 756 NLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERL-PDEFGNL-EALMEMKAVRSSIRELPSSIVQLNNLYRLSFERY 831 (1187)
Q Consensus 756 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l-~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~ 831 (1187)
++++|... .+|......++|+.|++++|..+..+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|.+.++
T Consensus 162 ~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 77776543 55544334467777777776434444 3456677 7777777777777777654 5566666666554
No 102
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=6.5e-16 Score=171.46 Aligned_cols=200 Identities=19% Similarity=0.173 Sum_probs=122.7
Q ss_pred CCeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCC
Q 001020 591 SELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGC 669 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 669 (1187)
.+|+.|++.++.+..++....+++|++|++++|.+..++ .+..+++|++|+|++|.+....+. +..+++|++|+|++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 356666666666666666556777777777777776653 566777777777777765544443 567777777777776
Q ss_pred CCcccccccccCCCcccEEEccCccCCcccCcc-c-cccccceeeccccCCCCcccccccccceEeecCccccccchh-h
Q 001020 670 SSLLEIHPSIKYLNKLAILSLRHCKCIKSLPTS-I-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLS-I 746 (1187)
Q Consensus 670 ~~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i 746 (1187)
......+..++.+++|++|++++|. +..+|.. + ++++|++|++++ |.++.+|.. +
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~~~~ 177 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSY---------------------NQLQSLPEGVF 177 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---------------------SCCCCCCTTTT
T ss_pred cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCC---------------------CCcCccCHHHh
Confidence 5433333345667777777777664 3333332 2 355555555544 444444443 4
Q ss_pred hccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc-ccchhhhcC
Q 001020 747 ECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR-ELPSSIVQL 820 (1187)
Q Consensus 747 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~l~~l 820 (1187)
..+++|+.|+|++|......|..+..+++|+.|++++|... +.+++|+.|++..|.+. .+|.+++.+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 66677777777776655555555677777777777776533 33456777777766665 556555443
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=1.9e-17 Score=193.98 Aligned_cols=253 Identities=15% Similarity=0.091 Sum_probs=146.7
Q ss_pred eeEEEecCCCCCCCCCcc-cccccceEeCcCCCccc-----ccccccccCCccEEEcCCCCCC---cccCC--------C
Q 001020 593 LKYFHWNGYPLKAMPSYI-HQENLIALEMPHSSVEK-----LWGGAQQLVNLKYMDLSHSKQL---TEIPD--------L 655 (1187)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~~l---~~~p~--------l 655 (1187)
|++..+....+..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|... ..+|. +
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333333333444555554 67889999999998875 4455778999999999987432 23332 3
Q ss_pred CCCCCccEEecCCCCCcc----cccccccCCCcccEEEccCccCCcccCccc-----cc---------cccceeeccccC
Q 001020 656 SLASNIEKLNLDGCSSLL----EIHPSIKYLNKLAILSLRHCKCIKSLPTSI-----HL---------ESLKQLFLSGCS 717 (1187)
Q Consensus 656 ~~l~~L~~L~L~~c~~l~----~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-----~l---------~~L~~L~Ls~c~ 717 (1187)
..+++|++|+|++|.... .++..+..+++|++|+|++|......+..+ .+ ++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 688999999999986554 477788999999999999987532222212 12 566666666654
Q ss_pred CC-CcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCc-----ccccccCCCCCCCEEeccCCCCC----
Q 001020 718 NL-NTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLE-----CLSSSLCKLKSLQHLNLFGCTKV---- 787 (1187)
Q Consensus 718 ~l-~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~l---- 787 (1187)
.. ..++ .+...+..+++|+.|+|++|.... ..|..+..+++|+.|+|++|...
T Consensus 171 l~~~~~~-----------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 171 LENGSMK-----------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CTGGGHH-----------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCcHHHH-----------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 32 1111 111334455555555555554331 12224555556666666555432
Q ss_pred ccCCcccCCcccccEEEcccCcccc-----cchhhhc--CCCCCEEEccccCCCCcCCccCCC-C-CCCCCccEEeccCC
Q 001020 788 ERLPDEFGNLEALMEMKAVRSSIRE-----LPSSIVQ--LNNLYRLSFERYQGKSHMGLRLPT-M-SGLRILTNLNLSDC 858 (1187)
Q Consensus 788 ~~lp~~l~~l~~L~~L~l~~n~i~~-----lp~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~-l-~~l~~L~~L~Ls~~ 858 (1187)
..+|..+..+++|+.|++++|.|+. ++..+.. +++|+.|++++|.........++. + .++++|+.|+|++|
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 3445555555566666666665553 2444422 566666666665543310001111 2 34566777777777
Q ss_pred CCCC
Q 001020 859 GITE 862 (1187)
Q Consensus 859 ~l~~ 862 (1187)
.++.
T Consensus 314 ~l~~ 317 (386)
T 2ca6_A 314 RFSE 317 (386)
T ss_dssp BSCT
T ss_pred cCCc
Confidence 7664
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=175.04 Aligned_cols=176 Identities=19% Similarity=0.139 Sum_probs=86.5
Q ss_pred cCCccEEEcCCCCCCcccCC-C--CCCCCccEEecCCCCCccccc----ccccCCCcccEEEccCccCCcccCccc-ccc
Q 001020 635 LVNLKYMDLSHSKQLTEIPD-L--SLASNIEKLNLDGCSSLLEIH----PSIKYLNKLAILSLRHCKCIKSLPTSI-HLE 706 (1187)
Q Consensus 635 l~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~c~~l~~~~----~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~ 706 (1187)
+++|++|+|++|.+....|. + ..+++|++|+|++|......+ ..+..+++|++|+|++|......|..+ +++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34466666666655544443 3 555666666666554333222 223455566666666655433333333 455
Q ss_pred ccceeeccccCCCCc-------ccccccccceEeecCccccccchh----hhccCCCcEEeccCCCCCcccccccCCC--
Q 001020 707 SLKQLFLSGCSNLNT-------FPEIACTIEELFLDGTAIEELPLS----IECLSRLITLNLENCSRLECLSSSLCKL-- 773 (1187)
Q Consensus 707 ~L~~L~Ls~c~~l~~-------~~~~~~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~~~l~~lp~~l~~l-- 773 (1187)
+|++|+|++|..... ....+.+|++|+|++|.++.++.. +..+++|++|+|++|......|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 566666555543211 111233455555555555544432 3455666666666665544445444443
Q ss_pred -CCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc
Q 001020 774 -KSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL 813 (1187)
Q Consensus 774 -~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l 813 (1187)
++|++|+|++|.. ..+|..+. ++|+.|++++|.|+.+
T Consensus 250 ~~~L~~L~Ls~N~l-~~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 250 SSALNSLNLSFAGL-EQVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CTTCCCEECCSSCC-CSCCSCCC--SCCSCEECCSCCCCSC
T ss_pred cCcCCEEECCCCCC-Cchhhhhc--CCCCEEECCCCcCCCC
Confidence 4555555555432 24444332 4555555555555444
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.6e-15 Score=163.32 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=120.8
Q ss_pred cceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccC
Q 001020 729 IEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRS 808 (1187)
Q Consensus 729 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n 808 (1187)
.+.++++++.++.+|..+. ++|+.|+|++|......+..+.++++|++|+|++|......+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4455666666666666543 56777777776665555556777777777777776655555556677777777777777
Q ss_pred cccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-ccCCCCCCcEEECccCCCccc
Q 001020 809 SIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-SLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 809 ~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l 886 (1187)
.++.+|. .+..+++|+.|++++|..... ....+.++++|+.|+|++|.++.++. .++.+++|+.|+|++|.++.+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSL---PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCc---ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 7776664 446677777777777655432 11125677888888888888888775 577888888888888888877
Q ss_pred cc-cccCCCCCCEEeecCCC
Q 001020 887 PT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 887 p~-~l~~L~~L~~L~L~~c~ 905 (1187)
|. .+..+++|+.|+|++|+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHHhCCCCCCEEEeeCCc
Confidence 76 67788888888888865
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=3.8e-17 Score=189.52 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=31.1
Q ss_pred CccEEeccCCCCCCc-----ccccCCCCCCcEEECccCCC--------ccccccccCCCCCCEEeecCCC
Q 001020 849 ILTNLNLSDCGITEL-----PNSLGQLSSLHILFRDRNNF--------ERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~~l-----~~~l~~l~~L~~L~L~~n~l--------~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
+|+.|+|++|.+++. ...+..+++|+.|+|++|.+ ..++..+.++++|+.|++++|+
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 455555555555442 22234556666666666652 2334455666677777777654
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=9.6e-15 Score=177.31 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=87.6
Q ss_pred cccEEEccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCC
Q 001020 684 KLAILSLRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRL 763 (1187)
Q Consensus 684 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l 763 (1187)
+|+.|++++|. +..+|..+ +++|++|+|++|.. ..+|..+.+|+.|+|++|.++.+|. +.. +|+.|+|++|...
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l-~~~L~~L~Ls~N~l-~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL-PPQITVLEITQNAL-ISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC-CTTCSEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred CccEEEeCCCC-CCccCHhH-cCCCCEEECcCCCC-cccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence 67777777765 44466544 35566666666542 2444444455555555555555554 332 5555555554322
Q ss_pred cccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCC
Q 001020 764 ECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPT 843 (1187)
Q Consensus 764 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 843 (1187)
. +|. .+++|+.|+|++|.. ..+|. .+++|+.|++++|.|+.+|. +.
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~------------------------- 179 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTFLPE-LP------------------------- 179 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSCCCC-CC-------------------------
T ss_pred C-CCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCCcch-hh-------------------------
Confidence 2 443 344555555555432 22333 33445555555555444444 22
Q ss_pred CCCCCCccEEeccCCCCCCcccccCCCCCC-------cEEECccCCCccccccccCCCCCCEEeecCCC
Q 001020 844 MSGLRILTNLNLSDCGITELPNSLGQLSSL-------HILFRDRNNFERIPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 844 l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~L~~L~~L~L~~c~ 905 (1187)
++|+.|+|++|+++.+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|+
T Consensus 180 ----~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 180 ----ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ----TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ----CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 445555555555555554 322 44 55555555555555555555555555555544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.3e-14 Score=162.62 Aligned_cols=167 Identities=23% Similarity=0.336 Sum_probs=133.0
Q ss_pred ccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEc
Q 001020 726 ACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKA 805 (1187)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 805 (1187)
+.+|+.|++++|.++.++. +..+++|+.|+|++|.... ++. +..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 4456677777777777754 7888888888888876544 443 8888889999988875 34444 3888889999999
Q ss_pred ccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcc
Q 001020 806 VRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFER 885 (1187)
Q Consensus 806 ~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~ 885 (1187)
++|.++.++ .+..+++|+.|++++|.... ++.+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCCc-----chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 999888874 57788899999998887654 2457788899999999999988776 8889999999999999998
Q ss_pred ccccccCCCCCCEEeecCCC
Q 001020 886 IPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 886 lp~~l~~L~~L~~L~L~~c~ 905 (1187)
+|. +..+++|+.|++++|+
T Consensus 193 l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEE
T ss_pred Chh-hccCCCCCEEECcCCc
Confidence 874 8889999999999864
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3.4e-14 Score=155.59 Aligned_cols=175 Identities=23% Similarity=0.271 Sum_probs=139.2
Q ss_pred ccceeeccccCCCCcccc-cccccceEeecCccccccch-hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCC
Q 001020 707 SLKQLFLSGCSNLNTFPE-IACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGC 784 (1187)
Q Consensus 707 ~L~~L~Ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 784 (1187)
+.++++++++. +..+|. ...+++.|+|++|.+..++. .+..+++|+.|+|++|......+..+..+++|++|+|++|
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34555555433 333433 34467788888888887765 5888999999999998877777777899999999999998
Q ss_pred CCCccCCcccCCcccccEEEcccCcccccchh-hhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc
Q 001020 785 TKVERLPDEFGNLEALMEMKAVRSSIRELPSS-IVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL 863 (1187)
Q Consensus 785 ~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l 863 (1187)
......+..+..+++|++|++++|.|+.+|.. +..+++|+.|++++|..... ....+.++++|+.|+|++|.++.+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI---PAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc---CHHHcCcCcCCCEEECCCCcCCcc
Confidence 76655567788999999999999999988875 57899999999999976542 122478899999999999999997
Q ss_pred cc-ccCCCCCCcEEECccCCCcc
Q 001020 864 PN-SLGQLSSLHILFRDRNNFER 885 (1187)
Q Consensus 864 ~~-~l~~l~~L~~L~L~~n~l~~ 885 (1187)
+. .+..+++|+.|+|++|.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 75 67899999999999998864
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=3.2e-16 Score=181.71 Aligned_cols=252 Identities=13% Similarity=0.085 Sum_probs=125.1
Q ss_pred eEeCcCCCcccccccc-cccCCccEEEcCCCCCCcccC----C-CCCCC-CccEEecCCCCCcccccccccCC-----Cc
Q 001020 617 ALEMPHSSVEKLWGGA-QQLVNLKYMDLSHSKQLTEIP----D-LSLAS-NIEKLNLDGCSSLLEIHPSIKYL-----NK 684 (1187)
Q Consensus 617 ~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p----~-l~~l~-~L~~L~L~~c~~l~~~~~~i~~L-----~~ 684 (1187)
.+++++|.+......+ ...++|++|+|++|.+....+ . +..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3456666666443333 334446666666665433322 1 44455 56666666554333333333332 55
Q ss_pred ccEEEccCccCCcccCccc-cccccceeeccccCCCCcccccccccceEeecCccccccchh-----hhc-cCCCcEEec
Q 001020 685 LAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLS-----IEC-LSRLITLNL 757 (1187)
Q Consensus 685 L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-----i~~-l~~L~~L~L 757 (1187)
|++|+|++|......+..+ .. +.....+|+.|+|++|.++..+.. +.. .++|++|+|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~----------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT----------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH----------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred ccEEECcCCcCChHHHHHHHHH----------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 5555555544221111111 00 000002344445555555544331 223 257777777
Q ss_pred cCCCCCc----ccccccCCCC-CCCEEeccCCCCCccCCc----ccCCc-ccccEEEcccCcccc-----cchhhhcC-C
Q 001020 758 ENCSRLE----CLSSSLCKLK-SLQHLNLFGCTKVERLPD----EFGNL-EALMEMKAVRSSIRE-----LPSSIVQL-N 821 (1187)
Q Consensus 758 ~~~~~l~----~lp~~l~~l~-~L~~L~L~~~~~l~~lp~----~l~~l-~~L~~L~l~~n~i~~-----lp~~l~~l-~ 821 (1187)
++|.... .++..+..++ +|++|+|++|......+. .+..+ ++|+.|++++|.|.. ++..+..+ +
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 7765543 3334444554 777777777654333322 23333 467777777776665 55555553 4
Q ss_pred CCCEEEccccCCCCcCCccC-CCCCCCCCccEEeccCCCCCC--------cccccCCCCCCcEEECccCCCc
Q 001020 822 NLYRLSFERYQGKSHMGLRL-PTMSGLRILTNLNLSDCGITE--------LPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 822 ~L~~L~l~~~~~~~~~~~~l-~~l~~l~~L~~L~Ls~~~l~~--------l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
+|+.|++++|.........+ ..+..+++|+.|+|++|.+.. ++..+..+++|+.|+|++|.+.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 67777776665443211111 113556667777777766332 3344556666667777776665
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=7.3e-15 Score=178.38 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSK 647 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~ 647 (1187)
+|++|++++|.+..+| ..+++|++|+|++|+|..+|. +.. +|++|+|++|.
T Consensus 81 ~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 81 QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 3444444444444444 223444444444444444443 222 44444444443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=9.4e-15 Score=179.48 Aligned_cols=166 Identities=23% Similarity=0.349 Sum_probs=106.7
Q ss_pred cccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcc
Q 001020 727 CTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAV 806 (1187)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 806 (1187)
.+|+.|++++|.+..+| .+..+++|+.|+|++|.... ++. +..+++|+.|+|++|. +..+| .+..+++|+.|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEec
Confidence 34555555556666665 36666777777777664433 332 6667777777777654 33343 46667777777777
Q ss_pred cCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccc
Q 001020 807 RSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 807 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 886 (1187)
+|.+..++ .+..+++|+.|+|++|.... ++.+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.|+.+
T Consensus 118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-----l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 118 HNGISDIN-GLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TSCCCCCG-GGGGCTTCSEEECCSSCCCC-----CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCc-cccCCCccCEEECCCCccCC-----chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 77776653 46667777777777765543 2446667777777777777776655 66777777777777777766
Q ss_pred cccccCCCCCCEEeecCCC
Q 001020 887 PTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 887 p~~l~~L~~L~~L~L~~c~ 905 (1187)
| .+..|++|+.|+|++|+
T Consensus 191 ~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp G-GGTTCTTCSEEECCSEE
T ss_pred h-HHccCCCCCEEEccCCc
Confidence 5 46677777777777654
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=3.6e-14 Score=158.90 Aligned_cols=171 Identities=26% Similarity=0.324 Sum_probs=79.1
Q ss_pred cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEc
Q 001020 611 HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSL 690 (1187)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L 690 (1187)
.+++|++|++++|.+..++ ++..+++|++|+|++|.+....+ +..+++|++|+|++|. +..++ .++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 4455555555555555553 24555555555555554333222 5555555555555543 22222 2555555555555
Q ss_pred cCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCccccccc
Q 001020 691 RHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSL 770 (1187)
Q Consensus 691 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 770 (1187)
++|. +..++....+++|++|++++ |.++.+ ..+..+++|+.|+|++|.... ++. +
T Consensus 120 ~~n~-i~~~~~l~~l~~L~~L~l~~---------------------n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~-l 174 (291)
T 1h6t_A 120 EHNG-ISDINGLVHLPQLESLYLGN---------------------NKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-L 174 (291)
T ss_dssp TTSC-CCCCGGGGGCTTCCEEECCS---------------------SCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-G
T ss_pred CCCc-CCCChhhcCCCCCCEEEccC---------------------CcCCcc-hhhccCCCCCEEEccCCcccc-chh-h
Confidence 5543 22222222233333333333 333333 234555555555555553322 222 4
Q ss_pred CCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccc
Q 001020 771 CKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRE 812 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~ 812 (1187)
..+++|+.|++++|. +..++. +..+++|+.|++++|.+..
T Consensus 175 ~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCcccC
Confidence 555555555555543 223332 4555555555555555444
No 114
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.55 E-value=4.2e-14 Score=163.03 Aligned_cols=289 Identities=17% Similarity=0.186 Sum_probs=169.6
Q ss_pred ccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhc--ccCChHH
Q 001020 190 YRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESE--RTGGLSQ 267 (1187)
Q Consensus 190 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~l~~ 267 (1187)
++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. ...... .......
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREE 76 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHH
Confidence 3445678999999999999998653 6899999999999999999998751 55653 333210 0012233
Q ss_pred HHHHHhhcccc----------------CCCCC--Cccccch--hhcccC-CceEEEEEcCCCChH--------H-HHHHh
Q 001020 268 LRQKLFSEDES----------------LSVGI--PNVGLNF--RGKRLS-RKKIIIVFDDVTCSE--------Q-IKFLI 317 (1187)
Q Consensus 268 l~~~ll~~~~~----------------~~~~~--~~~~~~~--~~~~l~-~kr~LlVLDDv~~~~--------~-l~~l~ 317 (1187)
+.+.+...+.. ..... ....... ...... .++++|||||++... + +..+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 33333322110 00000 0000000 001111 138999999997632 2 33333
Q ss_pred ccCCCCCCCcEEEEEeCChhhhhh-----------c-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHH
Q 001020 318 GSLDWFTSGSRIIITTRDKQVLKN-----------C-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRII 385 (1187)
Q Consensus 318 ~~~~~~~~gsrIIiTTR~~~v~~~-----------~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~ 385 (1187)
..... .++.++|+|++...+... . .....+++.+|+.+|+.+++............ .+.+.+++
T Consensus 157 ~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~ 232 (350)
T 2qen_A 157 YAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAV 232 (350)
T ss_dssp HHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHH
T ss_pred HHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 22111 257889999987643221 1 11247999999999999999875422221111 35678999
Q ss_pred HHhccCchhhHHHhhhhcC-CCHHHHHHHHHHhhcCCCchHHHHHHHhcCCC---CHHHHHHHhhhhcccCCCCHHHHHH
Q 001020 386 KFAQGVPLALKVLGCFLFG-RKMEDWESAANKLKKVPHLDIQKVLKASYDGL---DDEEQNIFLDIACFFKGEDKDLVVE 461 (1187)
Q Consensus 386 ~~~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~f~~~~~~~~l~~ 461 (1187)
+.++|+|+++..++..+.. .+...+. ..+.. .+...+...+..+ ++..+.++..+|+ .......+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999876432 2222221 11110 1111111112222 7889999999998 2345566655
Q ss_pred HHHhc--CCc---cccchHhhhccccceeeCCEEEe-hHhhhhhhh
Q 001020 462 FLDAS--GFS---AEIGISVLVDKSLIIILKNKIIM-HDLLQGMGR 501 (1187)
Q Consensus 462 ~~~~~--g~~---~~~~l~~L~~~sLi~~~~~~~~m-Hdll~~~~~ 501 (1187)
.+... +.. ...+++.|.+.+||...++.|.+ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 54322 332 34668999999999887777765 677777654
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=3.2e-16 Score=191.45 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=117.8
Q ss_pred CCCCCccEEecCCCCCcccccccccCCCcccEEEccCccC-------------CcccCccc-cccccceee-ccccCCCC
Q 001020 656 SLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRHCKC-------------IKSLPTSI-HLESLKQLF-LSGCSNLN 720 (1187)
Q Consensus 656 ~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~c~~-------------l~~lp~~~-~l~~L~~L~-Ls~c~~l~ 720 (1187)
..+++|+.|+|++| .+..+|..|+++++|+.|++++|.. ....|..+ ++++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 44556666666663 3456666677777777666655432 22222222 344555554 22211
Q ss_pred cccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccc
Q 001020 721 TFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEAL 800 (1187)
Q Consensus 721 ~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 800 (1187)
+.+|+.+.+.+|.++.+|. ..|+.|+|++|. +..+|. ++.+++|
T Consensus 422 -----~~~L~~l~l~~n~i~~l~~-----------------------------~~L~~L~Ls~n~-l~~lp~-~~~l~~L 465 (567)
T 1dce_A 422 -----LDDLRSKFLLENSVLKMEY-----------------------------ADVRVLHLAHKD-LTVLCH-LEQLLLV 465 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH-----------------------------TTCSEEECTTSC-CSSCCC-GGGGTTC
T ss_pred -----cchhhhhhhhcccccccCc-----------------------------cCceEEEecCCC-CCCCcC-ccccccC
Confidence 1123333344444443332 124555555542 333454 5556666
Q ss_pred cEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc--ccccCCCCCCcEEEC
Q 001020 801 MEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL--PNSLGQLSSLHILFR 878 (1187)
Q Consensus 801 ~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l--~~~l~~l~~L~~L~L 878 (1187)
+.|++++|.|+.+|..++.+++|+.|++++|.... +|.+.++++|+.|+|++|.++.+ |..++.+++|+.|+|
T Consensus 466 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-----lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALEN-----VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-----CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cEeecCcccccccchhhhcCCCCCEEECCCCCCCC-----CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 66666666666666666666666666666655433 33566777888888888888876 788888888888888
Q ss_pred ccCCCccccccc----cCCCCCCEEee
Q 001020 879 DRNNFERIPTSI----IHLTNLFLLKL 901 (1187)
Q Consensus 879 ~~n~l~~lp~~l----~~L~~L~~L~L 901 (1187)
++|.++.+|..+ ..+++|+.|++
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888777643 34778888754
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.1e-14 Score=149.55 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=91.7
Q ss_pred ccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEc
Q 001020 726 ACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKA 805 (1187)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 805 (1187)
+.+|+.|++++|.++.+| .+..+++|+.|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 345666777777777777 5777788888888877 333333 5677777777777776655556666777777777777
Q ss_pred ccCcccc-cchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCc
Q 001020 806 VRSSIRE-LPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 806 ~~n~i~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
++|.++. .|..+..+++|+.|++++|.. ++++| .+..+++|+.|+|++|.++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~--------------------------i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGA--------------------------ITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTB--------------------------CCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCC--------------------------ccccH-hhcCCCCCCEEECCCCCCc
Confidence 7777764 444555555555555554441 44443 3445555555555555555
Q ss_pred cccccccCCCCCCEEeecCC
Q 001020 885 RIPTSIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 885 ~lp~~l~~L~~L~~L~L~~c 904 (1187)
.++ .+..+++|+.|++++|
T Consensus 173 ~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 173 DYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCT-TGGGCSSCCEEEECBC
T ss_pred ChH-HhccCCCCCEEEeeCc
Confidence 554 4555555555555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=2e-14 Score=158.35 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=120.7
Q ss_pred ccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEccc
Q 001020 728 TIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVR 807 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 807 (1187)
++..++++++.++.++ .+..+++|+.|++++|. +..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 3445555566677666 57778888888888764 44555 57778888888888764 444444 77788888888888
Q ss_pred CcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCcccc
Q 001020 808 SSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 808 n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~lp 887 (1187)
|.++.+|.... ++|+.|++++|.... ++.+..+++|+.|+|++|++++++ .+..+++|+.|+|++|.++.+
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~-----~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRD-----TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSB-----SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CccCCcCcccc--CcccEEEccCCccCC-----ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 88887765333 778888888776544 345777888888888888888876 577788888888888888877
Q ss_pred ccccCCCCCCEEeecCCC
Q 001020 888 TSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 888 ~~l~~L~~L~~L~L~~c~ 905 (1187)
..+..+++|+.|++++|+
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 567888888888888764
No 118
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=9.4e-14 Score=160.55 Aligned_cols=288 Identities=15% Similarity=0.113 Sum_probs=167.1
Q ss_pred ccCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhh-----hcccCC
Q 001020 190 YRTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREE-----SERTGG 264 (1187)
Q Consensus 190 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-----~~~~~~ 264 (1187)
+...+..||||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. .... ......
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDF 77 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHH
Confidence 34456789999999999999 753 599999999999999999999886532 45653 3321 000011
Q ss_pred hHHHHHHHhh-------------ccccC--CCCCCc-------ccc-chhhccc---CCceEEEEEcCCCChH-----H-
Q 001020 265 LSQLRQKLFS-------------EDESL--SVGIPN-------VGL-NFRGKRL---SRKKIIIVFDDVTCSE-----Q- 312 (1187)
Q Consensus 265 l~~l~~~ll~-------------~~~~~--~~~~~~-------~~~-~~~~~~l---~~kr~LlVLDDv~~~~-----~- 312 (1187)
+..+.+.+.. .+... +..... ... ......+ ..++++|||||++... +
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 2223322211 10000 000000 000 0000111 1149999999996532 2
Q ss_pred HHHHhccCCCCCCCcEEEEEeCChhhhhh-----------cCc-ceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHH
Q 001020 313 IKFLIGSLDWFTSGSRIIITTRDKQVLKN-----------CRV-DGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKEL 380 (1187)
Q Consensus 313 l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l 380 (1187)
+..+..... ..++.++|+|+|....... .+. ...+++.+|+.+|+.+++...+...... ...
T Consensus 158 ~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~---- 231 (357)
T 2fna_A 158 LPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD---- 231 (357)
T ss_dssp HHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----
T ss_pred HHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----
Confidence 222221111 1246899999998653221 111 3579999999999999998754211111 111
Q ss_pred HHHHHHHhccCchhhHHHhhhhcC-CCHHHHHHH-HHHhhcCCCchHHHHHH-HhcC--CCCHHHHHHHhhhhcccCCCC
Q 001020 381 SDRIIKFAQGVPLALKVLGCFLFG-RKMEDWESA-ANKLKKVPHLDIQKVLK-ASYD--GLDDEEQNIFLDIACFFKGED 455 (1187)
Q Consensus 381 ~~~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~la~f~~~~~ 455 (1187)
..++++.++|+|+++..++..+.. .+..+|... .+... ..+...+. ..++ .|++..+.++..+|+ . . +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 178999999999999999877642 233333221 11110 01122222 2221 688999999999998 2 2 5
Q ss_pred HHHHHHHHH-hcC--C---ccccchHhhhccccceeeCCEEE-ehHhhhhhh
Q 001020 456 KDLVVEFLD-ASG--F---SAEIGISVLVDKSLIIILKNKII-MHDLLQGMG 500 (1187)
Q Consensus 456 ~~~l~~~~~-~~g--~---~~~~~l~~L~~~sLi~~~~~~~~-mHdll~~~~ 500 (1187)
...+...+. ..| . ....+++.|.+++||...++.|. .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 566654432 233 2 23567899999999988766666 578888764
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=6.9e-14 Score=171.81 Aligned_cols=172 Identities=25% Similarity=0.293 Sum_probs=77.2
Q ss_pred cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEEc
Q 001020 611 HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSL 690 (1187)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L 690 (1187)
.+.+|+.|++++|.|..++ ++..|++|+.|+|++|.+.... .+..+++|+.|+|++|. +..++ .+..+++|+.|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 4455555555555555543 3455555555555555433222 24455555555555542 22222 3444555555555
Q ss_pred cCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCccccccc
Q 001020 691 RHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSL 770 (1187)
Q Consensus 691 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 770 (1187)
++|. +..++....+++|+.|+|++ |.+..+ ..+..+++|+.|+|++|......| +
T Consensus 117 s~N~-l~~l~~l~~l~~L~~L~Ls~---------------------N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 117 EHNG-ISDINGLVHLPQLESLYLGN---------------------NKITDI-TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp TTSC-CCCCGGGGGCTTCSEEECCS---------------------SCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred cCCC-CCCCccccCCCccCEEECCC---------------------CccCCc-hhhcccCCCCEEECcCCcCCCchh--h
Confidence 5443 22222222233333333333 333333 234455555555555544333222 4
Q ss_pred CCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc
Q 001020 771 CKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL 813 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l 813 (1187)
..+++|+.|+|++|.. ..+| .+..+++|+.|+|++|.+...
T Consensus 172 ~~l~~L~~L~Ls~N~i-~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCCEEECCSSCC-CBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEccCCcCcCC
Confidence 5555555555555432 2222 344555555555555554443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.4e-16 Score=194.50 Aligned_cols=196 Identities=19% Similarity=0.208 Sum_probs=138.8
Q ss_pred cccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCCCCCCCCccEEecCCCCCcccccccccCCCcccEEE-
Q 001020 611 HQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPDLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILS- 689 (1187)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~- 689 (1187)
..++|+.|+|++|.++.+|.++++|++|+.|++++|..+..+|. .+ ..+......|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----ll-----~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL-----LM-----RALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-----HH-----HHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH-----HH-----HhcccccCCHHHHHHHHhcccCcc
Confidence 46789999999999999999999999999999977643222221 01 11223445677788888888888
Q ss_pred ccCccCCcccCccccccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccc
Q 001020 690 LRHCKCIKSLPTSIHLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSS 769 (1187)
Q Consensus 690 L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 769 (1187)
++.+. +.+|+.+.+++|. +..++. ..|+.|+|++|.++.+|. ++.+++|+.|+|++|... .+|..
T Consensus 417 l~~n~----------~~~L~~l~l~~n~-i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 417 MRAAY----------LDDLRSKFLLENS-VLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp GGHHH----------HHHHHHHHHHHHH-HHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred hhhcc----------cchhhhhhhhccc-ccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchh
Confidence 54432 3455555565543 222221 247888888999998887 888999999999987654 77888
Q ss_pred cCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccccc--chhhhcCCCCCEEEccccCC
Q 001020 770 LCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIREL--PSSIVQLNNLYRLSFERYQG 833 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l--p~~l~~l~~L~~L~l~~~~~ 833 (1187)
++.+++|+.|+|++|.. ..+| .++.+++|+.|++++|.|+.+ |..+..+++|+.|++++|..
T Consensus 482 ~~~l~~L~~L~Ls~N~l-~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 482 LAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp GGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred hhcCCCCCEEECCCCCC-CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 88888888888888654 3466 788888888888888888877 66666666666665555543
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=2.6e-13 Score=146.10 Aligned_cols=149 Identities=22% Similarity=0.225 Sum_probs=101.6
Q ss_pred ccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCC-cccCCcccccEEEcc
Q 001020 728 TIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLP-DEFGNLEALMEMKAV 806 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~ 806 (1187)
.-+.++.+++.++.+|..+. ++|+.|+|++|......|..+..+++|++|+|++|.. ..+| ..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence 34566666777777776543 6667777766665555555566666666666666543 3333 334555666666666
Q ss_pred cCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCccc
Q 001020 807 RSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 807 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 886 (1187)
+|.|+.++.. .+..+++|+.|+|++|++..+|..+..+++|+.|+|++|.|+.+
T Consensus 97 ~N~l~~l~~~--------------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 97 TNQLTVLPSA--------------------------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp SSCCCCCCTT--------------------------TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCccChh--------------------------HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc
Confidence 5555544321 24567788888888888888888888888999999999988888
Q ss_pred cc-cccCCCCCCEEeecCCC
Q 001020 887 PT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 887 p~-~l~~L~~L~~L~L~~c~ 905 (1187)
|. .+..+++|+.|+|++|+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSC
T ss_pred CHHHHhCCCCCCEEEeeCCC
Confidence 75 57888888888888865
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=3.6e-13 Score=143.99 Aligned_cols=148 Identities=22% Similarity=0.304 Sum_probs=95.4
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCc
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSS 809 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~ 809 (1187)
+.++++++.++.+|..+. ++|+.|+|++|......+..+..+++|+.|+|++|......|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456667777777776553 577777777766554445567777777777777776555556777777777777777777
Q ss_pred ccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCccccc
Q 001020 810 IRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERIPT 888 (1187)
Q Consensus 810 i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~lp~ 888 (1187)
|+.+|..+ +.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.|+.++.
T Consensus 92 l~~l~~~~--------------------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 92 ITELPKSL--------------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCCCTTT--------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccCHhH--------------------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 77666432 33445555555556655554 3445566666666666666666554
Q ss_pred -cccCCCCCCEEeecCCC
Q 001020 889 -SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 889 -~l~~L~~L~~L~L~~c~ 905 (1187)
.+..+++|+.|+|++|+
T Consensus 146 ~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHHhCCCCCCEEEeCCCC
Confidence 35666666666666653
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=3.3e-13 Score=143.07 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=89.2
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCc
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSS 809 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~ 809 (1187)
+.++.+++.++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34555556666666443 3466666666665443333445666666666666654333333345666666666666666
Q ss_pred ccccchh-hhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccc-cCCCCCCcEEECccCCCcccc
Q 001020 810 IRELPSS-IVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNS-LGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 810 i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~lp 887 (1187)
++.+|.. +..+++|+.|++++|..... ....+..+++|+.|+|++|.++.++.. +..+++|+.|+|++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSL---PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCccc---CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 6655543 34455555555555443321 011144455555555555555554433 455555555555555432
Q ss_pred ccccCCCCCCEEeecCCCCCCcCC
Q 001020 888 TSIIHLTNLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 888 ~~l~~L~~L~~L~L~~c~~L~~lp 911 (1187)
..+++|+.|+++.|..-..+|
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBB
T ss_pred ---cCCCCHHHHHHHHHhCCceee
Confidence 233455555555544444444
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3e-13 Score=142.04 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=53.1
Q ss_pred CeeEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccC-CCCCCCCccEEecCCCC
Q 001020 592 ELKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIP-DLSLASNIEKLNLDGCS 670 (1187)
Q Consensus 592 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~ 670 (1187)
+|+.|+++++.+..+|....+++|++|++++|.+..++ .+..+++|++|+|++|.+....+ .++.+++|++|+|++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 34444444445555553334555555555555544443 34455555555555555443222 35555555555555544
Q ss_pred CcccccccccCCCcccEEEccCccCCcccC
Q 001020 671 SLLEIHPSIKYLNKLAILSLRHCKCIKSLP 700 (1187)
Q Consensus 671 ~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp 700 (1187)
.....+..++.+++|++|++++|..+..+|
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 433344445555555555555544333333
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=3.7e-13 Score=142.63 Aligned_cols=161 Identities=21% Similarity=0.160 Sum_probs=123.5
Q ss_pred ccccceEeecCccccccchh-hhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEE
Q 001020 726 ACTIEELFLDGTAIEELPLS-IECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMK 804 (1187)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1187)
..++++|++++|.++.++.. +..+++|+.|+|++|......+..+..+++|++|+|++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 44677777777888877764 57888999999988765544445568889999999988765544445578889999999
Q ss_pred cccCcccccchh-hhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCC
Q 001020 805 AVRSSIRELPSS-IVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNF 883 (1187)
Q Consensus 805 l~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l 883 (1187)
+++|.++.++.. +..+++|+.|++++|..... ....+..+++|+.|+|++|.+. +.+++|+.|+++.|++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV---PDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCcccee---CHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhC
Confidence 999999888764 67889999999988876542 1223678899999999999654 4567899999999988
Q ss_pred c-cccccccCCCC
Q 001020 884 E-RIPTSIIHLTN 895 (1187)
Q Consensus 884 ~-~lp~~l~~L~~ 895 (1187)
+ .+|.++..++.
T Consensus 178 ~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 178 SGVVRNSAGSVAP 190 (208)
T ss_dssp TTTBBCTTSSBCT
T ss_pred CceeeccCccccC
Confidence 8 78888776655
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.8e-13 Score=156.78 Aligned_cols=170 Identities=18% Similarity=0.138 Sum_probs=91.8
Q ss_pred eEeecCccccccchhhhccCCCcEEeccCCCCCcccccccC-CCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCc
Q 001020 731 ELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLC-KLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSS 809 (1187)
Q Consensus 731 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~ 809 (1187)
.++++++.++.+|..+. +.++.|+|++|......+..+. .+++|+.|+|++|......+..+..+++|++|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45555555555554432 3455666665544333333344 56666666666654433334456666666666666666
Q ss_pred ccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccccc----CCCCCCcEEECccCCCc
Q 001020 810 IRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNSL----GQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 810 i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~l----~~l~~L~~L~L~~n~l~ 884 (1187)
|+.++. .+..+++|+.|+|++|..... ....+.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|.|+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~---~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVV---DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEE---CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 665544 344555555555555543321 1122555666666666666666666543 45666677777766666
Q ss_pred cccc-cccCCCC--CCEEeecCCC
Q 001020 885 RIPT-SIIHLTN--LFLLKLSYCE 905 (1187)
Q Consensus 885 ~lp~-~l~~L~~--L~~L~L~~c~ 905 (1187)
.+|. .+..++. |+.|+|++|+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ccCHHHhhhccHhhcceEEecCCC
Confidence 6653 3455554 2556665543
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=140.10 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=80.1
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccc-cccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccC
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLS-SSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRS 808 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n 808 (1187)
+.++++++.++.+|..+ ...++.|+|++|......| ..+..+++|+.|+|++|......+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35566666666666544 2345566666654433322 23555666666666665443333345666666666666666
Q ss_pred cccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-ccccCCCCCCcEEECccCCCccc-
Q 001020 809 SIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PNSLGQLSSLHILFRDRNNFERI- 886 (1187)
Q Consensus 809 ~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l- 886 (1187)
.++.++.. .+.++++|++|+|++|.++.+ |..+..+++|+.|+|++|+++.+
T Consensus 92 ~l~~~~~~--------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 92 RLENVQHK--------------------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp CCCCCCGG--------------------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred ccCccCHh--------------------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 66555432 133444555555555555553 34455556666666666666555
Q ss_pred cccccCCCCCCEEeecCCC
Q 001020 887 PTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 887 p~~l~~L~~L~~L~L~~c~ 905 (1187)
|..+..+++|+.|+|++|+
T Consensus 146 ~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTTTTCTTCCEEECCSCC
T ss_pred HHHhcCCCCCCEEEecCcC
Confidence 4455556666666666543
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=5.1e-13 Score=147.05 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=132.5
Q ss_pred cccccceeeccccCCCCccc--ccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEec
Q 001020 704 HLESLKQLFLSGCSNLNTFP--EIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNL 781 (1187)
Q Consensus 704 ~l~~L~~L~Ls~c~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 781 (1187)
.+.++..++++++.. ..++ ..+.+|+.|++++|.++.+| .+..+++|+.|+|++|.. ..++. +..+++|+.|++
T Consensus 17 ~l~~l~~l~l~~~~i-~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV-TDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCT-TSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCc-ccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence 355555566655432 2222 23456777777778888887 688899999999998754 44444 888999999999
Q ss_pred cCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCC
Q 001020 782 FGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGIT 861 (1187)
Q Consensus 782 ~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~ 861 (1187)
++|. +..+|.... ++|+.|++++|.++.++ .+..+++|+.|++++|.... ++.+..+++|+.|+|++|.+.
T Consensus 93 ~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-----~~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-----IVMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSC-CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-----CGGGGGCTTCCEEECTTSCCC
T ss_pred CCCc-cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-----ChHHccCCCCCEEECCCCcCc
Confidence 9875 445554333 89999999999999876 58889999999999988654 346788999999999999999
Q ss_pred CcccccCCCCCCcEEECccCCCcccccc
Q 001020 862 ELPNSLGQLSSLHILFRDRNNFERIPTS 889 (1187)
Q Consensus 862 ~l~~~l~~l~~L~~L~L~~n~l~~lp~~ 889 (1187)
++ ..+..+++|+.|+|++|.+...|..
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred ch-HHhccCCCCCEEeCCCCcccCCccc
Confidence 88 6788999999999999998877643
No 129
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=2e-12 Score=152.55 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=159.1
Q ss_pred CCCCccchHHHHHHHHHhh-cc--CC--CCeEEEEE--EecCcchHHHHHHHHHHHhhcc-----CCc-eEEEEechhhh
Q 001020 193 DNKDLIGVESSIRQIESLL-ST--GS--KDVYTLGI--WGIGGIGKTTLAGAIFNRISNQ-----FEG-SYFLQNVREES 259 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~~ 259 (1187)
.+..++||+.+++++.+++ .. .. ...+.+.| +|++|+||||||++++++.... +.. .+|+. ....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AFNA- 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GGGC-
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CCCC-
Confidence 4478999999999999988 42 11 22345656 9999999999999999877553 232 34443 2221
Q ss_pred cccCChHHHHHHHhhccccCCC-CCCcccc--chhhccc--CCceEEEEEcCCCCh--------HHHHHHhccCCCC---
Q 001020 260 ERTGGLSQLRQKLFSEDESLSV-GIPNVGL--NFRGKRL--SRKKIIIVFDDVTCS--------EQIKFLIGSLDWF--- 323 (1187)
Q Consensus 260 ~~~~~l~~l~~~ll~~~~~~~~-~~~~~~~--~~~~~~l--~~kr~LlVLDDv~~~--------~~l~~l~~~~~~~--- 323 (1187)
.....+...++..+..... ....... ......+ .+++++|||||++.. +.+..+...+...
T Consensus 98 ---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 98 ---PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp ---CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred ---CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 3344555555544311100 0000000 0011122 367999999999663 3344433322111
Q ss_pred C--CCcEEEEEeCChhhhhhc---------CcceeEEecCCCHHHHHHHHHHhh---hCCCCCCCchHHHHHHHHHHHhc
Q 001020 324 T--SGSRIIITTRDKQVLKNC---------RVDGIYEVEALLDYYALQLFSRHA---FGQNQNADPSYKELSDRIIKFAQ 389 (1187)
Q Consensus 324 ~--~gsrIIiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~l~~~i~~~~~ 389 (1187)
+ ....||+||+...+.... .....+++++++.+++.++|...+ +..... . .+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~-~---~~~~~~i~~~~~ 250 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW-E---PRHLELISDVYG 250 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC-C---HHHHHHHHHHHC
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC-C---hHHHHHHHHHHH
Confidence 2 344578888765432111 112339999999999999997654 321111 2 356788999999
Q ss_pred ------cCchhhHHHhhhh------cCC---CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccC--
Q 001020 390 ------GVPLALKVLGCFL------FGR---KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFK-- 452 (1187)
Q Consensus 390 ------GlPLal~~~g~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-- 452 (1187)
|+|..+..+.... .+. +.+.+..++..... ...+..+++.||+.++.++..+|.+..
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 9997655544321 111 33444444433210 234556778999999999999997642
Q ss_pred --CCCHHHHHH----HH-HhcCCc------cccchHhhhccccceee
Q 001020 453 --GEDKDLVVE----FL-DASGFS------AEIGISVLVDKSLIIIL 486 (1187)
Q Consensus 453 --~~~~~~l~~----~~-~~~g~~------~~~~l~~L~~~sLi~~~ 486 (1187)
......+.. +. ...|.. ...+++.|.+.+||...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 223433322 22 333422 23568889999999765
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=1.2e-12 Score=151.47 Aligned_cols=158 Identities=20% Similarity=0.142 Sum_probs=112.5
Q ss_pred cccceEeecCccccccchh-hh-ccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEE
Q 001020 727 CTIEELFLDGTAIEELPLS-IE-CLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMK 804 (1187)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1187)
..++.|+|++|.|+.++.. +. .+++|+.|+|++|......+..|.++++|++|+|++|......+..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3466777777777777655 33 778888888888766555556677888888888888765444445677888888888
Q ss_pred cccCccccc-chhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc-cccCCCCC--CcEEECcc
Q 001020 805 AVRSSIREL-PSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP-NSLGQLSS--LHILFRDR 880 (1187)
Q Consensus 805 l~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~--L~~L~L~~ 880 (1187)
+++|.|..+ |..+..+++|+.|+|++|.........+..+..+++|+.|+|++|+++.+| ..+..+++ |+.|+|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 888888866 456777888888888887765532111222256899999999999999887 45566776 48899999
Q ss_pred CCCc
Q 001020 881 NNFE 884 (1187)
Q Consensus 881 n~l~ 884 (1187)
|.+.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 9876
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=3.7e-12 Score=136.15 Aligned_cols=148 Identities=23% Similarity=0.228 Sum_probs=113.1
Q ss_pred eeeccccCCCCcccc-cccccceEeecCccccccch--hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCC
Q 001020 710 QLFLSGCSNLNTFPE-IACTIEELFLDGTAIEELPL--SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTK 786 (1187)
Q Consensus 710 ~L~Ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 786 (1187)
.++++++. +..+|. ....++.|+|++|.++.++. .+..+++|+.|+|++|......+..+..+++|++|+|++|..
T Consensus 15 ~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 45555433 333443 23356788888888988843 378999999999999886666666899999999999999877
Q ss_pred CccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCc-cc
Q 001020 787 VERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITEL-PN 865 (1187)
Q Consensus 787 l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l-~~ 865 (1187)
....+..+..+++|++|++++|.|+.+++ ..+.++++|+.|+|++|.++.+ |.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGN--------------------------DSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCT--------------------------TSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECH--------------------------hHcCCCccCCEEECCCCcCCEECHH
Confidence 66666679999999999999999887643 1244566777788888888776 66
Q ss_pred ccCCCCCCcEEECccCCCc
Q 001020 866 SLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 866 ~l~~l~~L~~L~L~~n~l~ 884 (1187)
.+..+++|+.|+|++|.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 7788889999999988776
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=4.7e-12 Score=135.31 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=112.9
Q ss_pred eeeccccCCCCcccc-cccccceEeecCccccccch-hhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCC
Q 001020 710 QLFLSGCSNLNTFPE-IACTIEELFLDGTAIEELPL-SIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKV 787 (1187)
Q Consensus 710 ~L~Ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l 787 (1187)
.++++++ .+..+|. ...+++.|++++|.|+.++. .+..+++|+.|+|++|......|..|.++++|++|+|++|...
T Consensus 15 ~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 3444433 2334443 33468888888899998876 6889999999999999887777889999999999999997655
Q ss_pred ccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc-c
Q 001020 788 ERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN-S 866 (1187)
Q Consensus 788 ~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~-~ 866 (1187)
...+..+..+++|+.|++++|.|+.++.. .+.++++|+.|+|++|.++.++. .
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~--------------------------~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVD--------------------------AFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------TTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHH--------------------------HcCCCCCCCEEECCCCcCCEECHHH
Confidence 43344578999999999999998876531 24556677777888888877664 4
Q ss_pred cCCCCCCcEEECccCCCc
Q 001020 867 LGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 867 l~~l~~L~~L~L~~n~l~ 884 (1187)
+..+++|+.|+|++|.+.
T Consensus 148 ~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCEE
T ss_pred HhCCCCCCEEEeCCCCcC
Confidence 677888999999888775
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=9e-12 Score=145.53 Aligned_cols=274 Identities=17% Similarity=0.101 Sum_probs=160.9
Q ss_pred CCCccchHHHHHHHHHhhcc--CCCCeEEEEEEecCcchHHHHHHHHHHHhhcc------C-C-ceEEEEechhhhcccC
Q 001020 194 NKDLIGVESSIRQIESLLST--GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ------F-E-GSYFLQNVREESERTG 263 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F-~-~~~~~~~~~~~~~~~~ 263 (1187)
++.++||+.+++++..++.. .....+.+.|+|++|+||||||+++++..... + . ..+++ +..... .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~~---~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV-NCREVG---G 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE-EHHHHC---S
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE-ECccCC---C
Confidence 36899999999999987753 23345689999999999999999999976443 2 2 23444 333221 0
Q ss_pred ChHHHHHHHhhccccCCCCCCcc--cc--chhhcccCCceEEEEEcCCCChHH-------HHHHhccCCCCCCCcEEEEE
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNV--GL--NFRGKRLSRKKIIIVFDDVTCSEQ-------IKFLIGSLDWFTSGSRIIIT 332 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~--~~--~~~~~~l~~kr~LlVLDDv~~~~~-------l~~l~~~~~~~~~gsrIIiT 332 (1187)
....+...+...+.......... .. ......+..++.+|||||++.... +..+... . .+.+||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEE
Confidence 23333344433321011111011 00 111123444455999999976432 3333332 2 67889999
Q ss_pred eCChhhhh----hc--CcceeEEecCCCHHHHHHHHHHhhh---CCCCCCCchHHHHHHHHHHHhc---cCch-hhHHHh
Q 001020 333 TRDKQVLK----NC--RVDGIYEVEALLDYYALQLFSRHAF---GQNQNADPSYKELSDRIIKFAQ---GVPL-ALKVLG 399 (1187)
Q Consensus 333 TR~~~v~~----~~--~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~l~~~i~~~~~---GlPL-al~~~g 399 (1187)
|+...... .. .....+++++++.++..+++...+. ..... .+ +..+.++++++ |.|. |+..+-
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~---~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DD---EILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CS---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CH---HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 98753211 11 1223899999999999999998753 22211 22 45677888888 8887 433333
Q ss_pred hhh--c----CCCHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccCCCCH-HHHHHHHHhcCCc---
Q 001020 400 CFL--F----GRKMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFKGEDK-DLVVEFLDASGFS--- 469 (1187)
Q Consensus 400 ~~L--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~-~~l~~~~~~~g~~--- 469 (1187)
... + .-+.+.+..+++... ...+..+++.|++.++..+..++....+.+. +....+....|..
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 222 1 236677777776643 2456677789999999888878761110111 1333444443422
Q ss_pred ---cccchHhhhccccceee
Q 001020 470 ---AEIGISVLVDKSLIIIL 486 (1187)
Q Consensus 470 ---~~~~l~~L~~~sLi~~~ 486 (1187)
....+..|.++++|...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 23456778888888754
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.5e-12 Score=131.22 Aligned_cols=133 Identities=21% Similarity=0.275 Sum_probs=54.6
Q ss_pred CCcEEeccCCCCC-cccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccc-cchhhhcCCCCCEEEc
Q 001020 751 RLITLNLENCSRL-ECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRE-LPSSIVQLNNLYRLSF 828 (1187)
Q Consensus 751 ~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~L~l 828 (1187)
+|+.|++++|... ..+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444443322 2333333444444444444443 2222 344455555555555555554 3333333444443333
Q ss_pred cccCCCCcCCccCCCCCCCCCccEEeccCCCCCCccc----ccCCCCCCcEEECccCCCcccc
Q 001020 829 ERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPN----SLGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 829 ~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~----~l~~l~~L~~L~L~~n~l~~lp 887 (1187)
++|...... .+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+|
T Consensus 103 s~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 333222110 01123334444444444444444433 3444444444444444444444
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.5e-11 Score=132.39 Aligned_cols=148 Identities=22% Similarity=0.246 Sum_probs=103.0
Q ss_pred ceeeccccCCCCcccc-cccccceEeecCcccccc-chhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCC
Q 001020 709 KQLFLSGCSNLNTFPE-IACTIEELFLDGTAIEEL-PLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTK 786 (1187)
Q Consensus 709 ~~L~Ls~c~~l~~~~~-~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~ 786 (1187)
+.++.+++ .+..+|. ...+|+.|+|++|.++.+ |..+..+++|+.|+|++|......+..+..+++|+.|+|++|..
T Consensus 22 ~~v~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCC-CcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34444432 2333443 345677888888888877 55688999999999999876444445678999999999999865
Q ss_pred CccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc-c
Q 001020 787 VERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP-N 865 (1187)
Q Consensus 787 l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~-~ 865 (1187)
....+..+..+++|+.|++++|.|+.+|..+..+++|+.|++ ++|.+..++ .
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L---------------------------~~N~l~~~~~~ 153 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL---------------------------DQNQLKSIPHG 153 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEEC---------------------------CSSCCCCCCTT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEEC---------------------------CCCcCCccCHH
Confidence 544455678999999999999999988876665555555544 455555444 2
Q ss_pred ccCCCCCCcEEECccCCCc
Q 001020 866 SLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 866 ~l~~l~~L~~L~L~~n~l~ 884 (1187)
.+..+++|+.|+|++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 3556666777777766655
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=4.1e-11 Score=139.84 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=162.1
Q ss_pred CCCCccchHHHHHHHHHhhccC--CCCeEEEEEEecCcchHHHHHHHHHHHhhccCC---ceEEEEechhhhcccCChHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTG--SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE---GSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~l~~ 267 (1187)
.++.++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.....+. ..+|+. .... .....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~----~~~~~ 92 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQI----DTPYR 92 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHH----CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCC----CCHHH
Confidence 4578999999999999988642 334568999999999999999999998766542 234443 2222 23344
Q ss_pred HHHHHhhccccCCCC-CCccccch--hhc--ccCCceEEEEEcCCCCh------HHHHHHhccCCC-CCCCcEEEEEeCC
Q 001020 268 LRQKLFSEDESLSVG-IPNVGLNF--RGK--RLSRKKIIIVFDDVTCS------EQIKFLIGSLDW-FTSGSRIIITTRD 335 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~-~~~~~~~~--~~~--~l~~kr~LlVLDDv~~~------~~l~~l~~~~~~-~~~gsrIIiTTR~ 335 (1187)
+...+...+...... ........ ... ...+++.+||||+++.. +.+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 555555443111000 00000000 001 12355899999998653 334444333211 1345677888887
Q ss_pred hhhhhhc------C-cceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhc---cCchhhHHHhhh-h--
Q 001020 336 KQVLKNC------R-VDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQ---GVPLALKVLGCF-L-- 402 (1187)
Q Consensus 336 ~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~---GlPLal~~~g~~-L-- 402 (1187)
....... . ....+++++++.++..+++...+...... ..-..+..+.++++++ |.|..+..+... .
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP-GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS-SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5432221 1 12589999999999999998764311101 1112356677888888 999844333222 1
Q ss_pred c---C---CCHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccC-CC---CHHHH----HHHHHhcCC
Q 001020 403 F---G---RKMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFK-GE---DKDLV----VEFLDASGF 468 (1187)
Q Consensus 403 ~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~---~~~~l----~~~~~~~g~ 468 (1187)
+ + -+.+.++.++.... ...+.-.+.+|+..++.++..++...+ +. ....+ ..+....|.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 1 24556666655432 245666778899999998888886433 21 23222 333333332
Q ss_pred c------cccchHhhhccccceee
Q 001020 469 S------AEIGISVLVDKSLIIIL 486 (1187)
Q Consensus 469 ~------~~~~l~~L~~~sLi~~~ 486 (1187)
. ...+++.|.++++|...
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 24457788888888653
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=8.4e-12 Score=127.21 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=109.8
Q ss_pred CCCCCCCEEeccCCCCC-ccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCC-CCCCC
Q 001020 771 CKLKSLQHLNLFGCTKV-ERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPT-MSGLR 848 (1187)
Q Consensus 771 ~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~l~ 848 (1187)
...++|++|++++|... ..+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|..... +|. +.+++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG----LDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC----CCHHHHHCT
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH----HHHHHhhCC
Confidence 34588999999998754 47888889999999999999999888 7788889999999988876553 333 44588
Q ss_pred CccEEeccCCCCCCcc--cccCCCCCCcEEECccCCCccccc----cccCCCCCCEEeecCCCCCCcCC
Q 001020 849 ILTNLNLSDCGITELP--NSLGQLSSLHILFRDRNNFERIPT----SIIHLTNLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~~l~--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~L~~c~~L~~lp 911 (1187)
+|+.|+|++|.++.++ ..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|. +.++|
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 8999999999988876 678888999999999999888876 67888999999998864 44444
No 138
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=7.1e-11 Score=137.92 Aligned_cols=278 Identities=15% Similarity=0.093 Sum_probs=158.5
Q ss_pred CCCCccchHHHHHHHHHhhccC--CCCeEEEEEEecCcchHHHHHHHHHHHhhccC-----Cc-eEEEEechhhhcccCC
Q 001020 193 DNKDLIGVESSIRQIESLLSTG--SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-----EG-SYFLQNVREESERTGG 264 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~~~~~~~ 264 (1187)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ .. .+++ +.... ..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~----~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV-NARHR----ET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE-ETTTS----CS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE-ECCcC----CC
Confidence 4478999999999999988532 34456899999999999999999998764432 22 3334 32221 22
Q ss_pred hHHHHHHHhhccccC-CCCCCcccc--chhhc--ccCCceEEEEEcCCCChHH-------HHHHhccCCCC--CCCcEEE
Q 001020 265 LSQLRQKLFSEDESL-SVGIPNVGL--NFRGK--RLSRKKIIIVFDDVTCSEQ-------IKFLIGSLDWF--TSGSRII 330 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~-~~~~~~~~~--~~~~~--~l~~kr~LlVLDDv~~~~~-------l~~l~~~~~~~--~~gsrII 330 (1187)
...+...+...+... +........ ..... ...+++.+|||||++.... +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 233334443332110 100000100 00011 1246789999999976432 33333322211 4466788
Q ss_pred EEeCChhh--------hhhcCcceeEEecCCCHHHHHHHHHHhhhC--CCCCCCchHHHHHHHHHHHhc---cCch-hhH
Q 001020 331 ITTRDKQV--------LKNCRVDGIYEVEALLDYYALQLFSRHAFG--QNQNADPSYKELSDRIIKFAQ---GVPL-ALK 396 (1187)
Q Consensus 331 iTTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~--~~~~~~~~~~~l~~~i~~~~~---GlPL-al~ 396 (1187)
.||+.... ...++ ...+.+++++.++..+++...+.. ......+ +..+.++++++ |.|. ++.
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHH
Confidence 88876532 11111 147899999999999999887532 1111122 45677888888 9994 333
Q ss_pred HHhhhh--c---C---CCHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccCCCC---HHH----HHH
Q 001020 397 VLGCFL--F---G---RKMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFKGED---KDL----VVE 461 (1187)
Q Consensus 397 ~~g~~L--~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~---~~~----l~~ 461 (1187)
++.... + + -+.+.++.++.... ...+.-++..|++.++..++.++....+.+ ... ...
T Consensus 248 ~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 248 LLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 322221 1 2 15666777666542 234566778999999998888885544432 222 223
Q ss_pred HHHhcCCc------cccchHhhhccccceee
Q 001020 462 FLDASGFS------AEIGISVLVDKSLIIIL 486 (1187)
Q Consensus 462 ~~~~~g~~------~~~~l~~L~~~sLi~~~ 486 (1187)
+....|.. ....++.|...+++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 33333322 23456777888887753
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=1.9e-12 Score=163.09 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=58.8
Q ss_pred cccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCC
Q 001020 766 LSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMS 845 (1187)
Q Consensus 766 lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 845 (1187)
.|..+..+++|+.|+|++|.. ..+|..+..+++|++|+|++|.|+.+|..+..+++|+.|+|++|..... ...+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l----p~~~~ 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL----PAELG 290 (727)
T ss_dssp ------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC----CSSGG
T ss_pred ChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc----Chhhc
Confidence 344455555555555555432 2445444455555555555555555555555555555555555554321 12245
Q ss_pred CCCCccEEeccCCCCCCcccccCCCCCCcEEECccCCCc
Q 001020 846 GLRILTNLNLSDCGITELPNSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 846 ~l~~L~~L~Ls~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 884 (1187)
++++|+.|+|++|.++.+|..++.+++|+.|+|++|.|+
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 555566666666666666655666666666666666665
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=9.1e-12 Score=124.14 Aligned_cols=125 Identities=20% Similarity=0.167 Sum_probs=74.5
Q ss_pred cCCCcEEeccCCCCC-cccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccc-cchhhhcCCCCCEE
Q 001020 749 LSRLITLNLENCSRL-ECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRE-LPSSIVQLNNLYRL 826 (1187)
Q Consensus 749 l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~-lp~~l~~l~~L~~L 826 (1187)
.++|+.|++++|... ..+|..+..+++|+.|++++|.. ..+ ..+..+++|++|++++|.++. +|..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-------- 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE-------- 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhh--------
Confidence 356666666666544 35555556666666666666533 222 445555555555555555554 333332
Q ss_pred EccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc--cccCCCCCCcEEECccCCCccccc----cccCCCCCCEEe
Q 001020 827 SFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP--NSLGQLSSLHILFRDRNNFERIPT----SIIHLTNLFLLK 900 (1187)
Q Consensus 827 ~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~ 900 (1187)
.+++|+.|++++|.++.++ ..++.+++|+.|++++|.++.+|. .+..+++|+.|+
T Consensus 86 -------------------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 86 -------------------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp -------------------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred -------------------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 2445566666666666543 566677777777777777776665 466777777777
Q ss_pred ec
Q 001020 901 LS 902 (1187)
Q Consensus 901 L~ 902 (1187)
++
T Consensus 147 l~ 148 (149)
T 2je0_A 147 GY 148 (149)
T ss_dssp TB
T ss_pred CC
Confidence 65
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=2.8e-12 Score=161.55 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=70.7
Q ss_pred ccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchh
Q 001020 737 TAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSS 816 (1187)
Q Consensus 737 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~ 816 (1187)
|.+...|..+..+++|+.|+|++|... .+|..+.++++|++|+|++|.. ..+|..++.+++|+.|+|++|.|+.+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 333334444555555555555554432 4454455555555555555432 25555555555666666666665555555
Q ss_pred hhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC-cccccCCCC-CCcEEECccCCCc-cccccccCC
Q 001020 817 IVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE-LPNSLGQLS-SLHILFRDRNNFE-RIPTSIIHL 893 (1187)
Q Consensus 817 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~-l~~~l~~l~-~L~~L~L~~n~l~-~lp~~l~~L 893 (1187)
+..+++|+.|+|++|..... ...+..+++|+.|+|++|.++. +|..+..+. .+..|+|++|.++ .+|
T Consensus 289 ~~~l~~L~~L~L~~N~l~~l----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------ 358 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTL----PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------ 358 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCC----CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------
T ss_pred hcCCCCCCEEECCCCCCCcc----ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------
Confidence 55566666666655544321 1125566666666666666664 333332221 1123456666654 222
Q ss_pred CCCCEEeecCC
Q 001020 894 TNLFLLKLSYC 904 (1187)
Q Consensus 894 ~~L~~L~L~~c 904 (1187)
..|+.|+++++
T Consensus 359 ~~l~~l~l~~n 369 (727)
T 4b8c_D 359 HERRFIEINTD 369 (727)
T ss_dssp CC---------
T ss_pred cccceeEeecc
Confidence 24455555554
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=3.6e-11 Score=123.56 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=36.1
Q ss_pred CCCCCccEEeccCCCCCCccc--ccCCCCCCcEEECccCCCcccccc----ccCCCCCCEEeecCC
Q 001020 845 SGLRILTNLNLSDCGITELPN--SLGQLSSLHILFRDRNNFERIPTS----IIHLTNLFLLKLSYC 904 (1187)
Q Consensus 845 ~~l~~L~~L~Ls~~~l~~l~~--~l~~l~~L~~L~L~~n~l~~lp~~----l~~L~~L~~L~L~~c 904 (1187)
..+++|+.|+|++|.+.++|. .+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 344555556666666655554 555666666666666666666653 556666666666654
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.15 E-value=2.2e-10 Score=124.19 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=120.0
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCce---------------------EE
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGS---------------------YF 251 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~---------------------~~ 251 (1187)
....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.....+... ..
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 34579999999999999987543 234788999999999999999998765433111 00
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCC--hHHHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTC--SEQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~--~~~l~~l~~~~~~~~~gsrI 329 (1187)
+ .... . .....+ +.+...+ . .....+++.+||+||++. ...++.+...+.....+.++
T Consensus 100 ~-~~~~---~-~~~~~~-~~~~~~~---~-----------~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~ 159 (250)
T 1njg_A 100 I-DAAS---R-TKVEDT-RDLLDNV---Q-----------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 159 (250)
T ss_dssp E-ETTC---G-GGHHHH-HHHHHSC---C-----------CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEE
T ss_pred e-cCcc---c-ccHHHH-HHHHHHh---h-----------hchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEE
Confidence 0 0000 0 001111 1111111 0 001345789999999965 44566666555444567889
Q ss_pred EEEeCChhhhh-h-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhh
Q 001020 330 IITTRDKQVLK-N-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFL 402 (1187)
Q Consensus 330 IiTTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L 402 (1187)
|+||+...... . ......+++++++.+|..+++...+........ .+..+.++++++|+|..+..+...+
T Consensus 160 i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 160 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99987653221 1 122358999999999999999988754332212 3567889999999999988776543
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1.5e-10 Score=120.60 Aligned_cols=123 Identities=22% Similarity=0.227 Sum_probs=91.4
Q ss_pred eEEEecCCCCCCCCCcccccccceEeCcCCCccccccc--ccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCC
Q 001020 594 KYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGG--AQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCS 670 (1187)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 670 (1187)
+.++++++.++.+|..+. .+|++|+|++|.+..++.. +..+++|++|+|++|.+....|. |.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 567778888888887653 3788888888888887753 77888888888888887766664 8888888888888876
Q ss_pred CcccccccccCCCcccEEEccCccCCcccCccc-cccccceeeccccC
Q 001020 671 SLLEIHPSIKYLNKLAILSLRHCKCIKSLPTSI-HLESLKQLFLSGCS 717 (1187)
Q Consensus 671 ~l~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~ 717 (1187)
.....+..+..+++|++|+|++|......|..+ .+++|++|+|++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 544445557888888888888877555556555 47777777777765
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=2.3e-10 Score=130.35 Aligned_cols=99 Identities=11% Similarity=0.188 Sum_probs=61.5
Q ss_pred cccccEEEcccCcccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCcc-EEeccCCCCCCcc-cccCCCCCC
Q 001020 797 LEALMEMKAVRSSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILT-NLNLSDCGITELP-NSLGQLSSL 873 (1187)
Q Consensus 797 l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~-~L~Ls~~~l~~l~-~~l~~l~~L 873 (1187)
+++|+.|++.+|.++.+|. .+..+.+|+.|.+.++ ... ..-..|.++++|+ .|+|.+ +++.++ ..+.++++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~--I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKT--IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCE--ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cce--ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 3455555555555555554 3445555555555543 111 1122366777777 777776 666654 566778888
Q ss_pred cEEECccCCCccccc-cccCCCCCCEEe
Q 001020 874 HILFRDRNNFERIPT-SIIHLTNLFLLK 900 (1187)
Q Consensus 874 ~~L~L~~n~l~~lp~-~l~~L~~L~~L~ 900 (1187)
+.|+|++|+++.++. .|.++++|+.|.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 888888888887776 677777887775
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.4e-10 Score=119.17 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=96.2
Q ss_pred eEEEecCCCCCCCCCcccccccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCCc
Q 001020 594 KYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSSL 672 (1187)
Q Consensus 594 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 672 (1187)
++++++++.+..+|..+ +.+|++|+|++|.|..+|..+..+++|+.|+|++|.+....+. |.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 46778888888888765 4689999999999999988888999999999999987666554 888999999999997655
Q ss_pred ccccccccCCCcccEEEccCccCCcccCcc-c-cccccceeeccccC
Q 001020 673 LEIHPSIKYLNKLAILSLRHCKCIKSLPTS-I-HLESLKQLFLSGCS 717 (1187)
Q Consensus 673 ~~~~~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~ 717 (1187)
...+..+..+++|++|+|++|. +..+|.. + .+++|+.|+|++|+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 4445578889999999999876 4455543 4 57788888877764
No 147
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=3.7e-11 Score=119.67 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=74.9
Q ss_pred cccceEeecCcccc--ccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEE
Q 001020 727 CTIEELFLDGTAIE--ELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMK 804 (1187)
Q Consensus 727 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1187)
.+++.|++++|.++ .+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45667777777777 777777888888888888875443 3 5678888888888888776665777777788888888
Q ss_pred cccCcccccc--hhhhcCCCCCEEEccccC
Q 001020 805 AVRSSIRELP--SSIVQLNNLYRLSFERYQ 832 (1187)
Q Consensus 805 l~~n~i~~lp--~~l~~l~~L~~L~l~~~~ 832 (1187)
+++|.++.++ ..+..+++|+.|++++|.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 8888888765 445555554444444443
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=2.5e-10 Score=130.07 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=111.4
Q ss_pred ccccceEeCcCCCccccccc-ccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCCC---ccc-ccccccCCCcc
Q 001020 612 QENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCSS---LLE-IHPSIKYLNKL 685 (1187)
Q Consensus 612 ~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~---l~~-~~~~i~~L~~L 685 (1187)
+.+|+.|+|++ .++.++.. |..|++|+.|+|++|......+. |.++.++..+.+..... ... -...+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777777 77776543 56777777777777765443333 66666666655544110 011 11123334444
Q ss_pred c-EEEccCccCCcccC--ccccccccceeeccccCCCCc---ccccccccceEeecCccccccchh-hhccCCCcEEecc
Q 001020 686 A-ILSLRHCKCIKSLP--TSIHLESLKQLFLSGCSNLNT---FPEIACTIEELFLDGTAIEELPLS-IECLSRLITLNLE 758 (1187)
Q Consensus 686 ~-~L~L~~c~~l~~lp--~~~~l~~L~~L~Ls~c~~l~~---~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 758 (1187)
+ .+.+.....+.... ..+...++..+.+.+.-.... +.....+|+.|+|.+|.++.+|.. +.++++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4 34443322111100 011345555555554311111 111234667777777777777654 5667777777776
Q ss_pred CCCCCcccc-cccCCCCCCC-EEeccCCCCCccC-CcccCCcccccEEEcccCcccccch-hhhcCCCCCEEE
Q 001020 759 NCSRLECLS-SSLCKLKSLQ-HLNLFGCTKVERL-PDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLYRLS 827 (1187)
Q Consensus 759 ~~~~l~~lp-~~l~~l~~L~-~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L~ 827 (1187)
++ +..++ ..|.++++|+ .|++.+ .+..+ +..|.++++|+.|++.+|.++.++. .+.++++|+.|.
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 64 44333 3566677777 777765 33333 3556666777777766666666654 444455555543
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=3.8e-10 Score=117.67 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=67.6
Q ss_pred cccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcc
Q 001020 727 CTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAV 806 (1187)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 806 (1187)
.+++.|++++|.++.+|..+..+++|+.|+|++|......+..|.++++|++|+|++|......|..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 45667777777777777777777777777777776655555567777777777777765544445566677777777777
Q ss_pred cCcccccchh-hhcCCCCCEEEcccc
Q 001020 807 RSSIRELPSS-IVQLNNLYRLSFERY 831 (1187)
Q Consensus 807 ~n~i~~lp~~-l~~l~~L~~L~l~~~ 831 (1187)
+|.|+.+|.. +..+++|+.|++.+|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCC
Confidence 7777666542 334444444444433
No 150
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=1.6e-10 Score=118.69 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred CCeeEEEecCCCCCCCCCccccc-ccceEeCcCCCcccccccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCC
Q 001020 591 SELKYFHWNGYPLKAMPSYIHQE-NLIALEMPHSSVEKLWGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDG 668 (1187)
Q Consensus 591 ~~Lr~L~l~~~~l~~lp~~~~~~-~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 668 (1187)
.+|+.|++++|.+..+|....+. +|++|++++|.+..+ ..+..+++|++|+|++|.+....+. +..+++|++|+|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 45677777777777776655554 888888888888877 6677888888888888876554444 47888888888888
Q ss_pred CCCcccccc--cccCCCcccEEEccCccCCcccCcc----c-cccccceeeccccC
Q 001020 669 CSSLLEIHP--SIKYLNKLAILSLRHCKCIKSLPTS----I-HLESLKQLFLSGCS 717 (1187)
Q Consensus 669 c~~l~~~~~--~i~~L~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~Ls~c~ 717 (1187)
|. +..+|. .++.+++|+.|++++|. +..+|.. + .+++|+.|++++|.
T Consensus 98 N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred Cc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 64 456665 67888888888888876 4455653 3 57777777777654
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=8.8e-10 Score=113.18 Aligned_cols=59 Identities=31% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCccEEeccCCCCCCcccc-cCCCCCCcEEECccCCCcccccc-ccCCCCCCEEeecCCC
Q 001020 847 LRILTNLNLSDCGITELPNS-LGQLSSLHILFRDRNNFERIPTS-IIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 847 l~~L~~L~Ls~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~L~~c~ 905 (1187)
+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 33444444444444444332 34555555555555555555543 3555666666666553
No 152
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=5.6e-10 Score=116.33 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=45.8
Q ss_pred ccceEeecCccccccchh--hhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEc
Q 001020 728 TIEELFLDGTAIEELPLS--IECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKA 805 (1187)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 805 (1187)
+++.|++++|.++.++.. +..+++|++|+|++|......|..+..+++|++|+|++|......+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555555542 555556666666555544444555555555555555555444434444555555555555
Q ss_pred ccCccccc
Q 001020 806 VRSSIREL 813 (1187)
Q Consensus 806 ~~n~i~~l 813 (1187)
++|.|+.+
T Consensus 110 ~~N~l~~~ 117 (192)
T 1w8a_A 110 YDNQISCV 117 (192)
T ss_dssp CSSCCCEE
T ss_pred CCCcCCee
Confidence 55555533
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.3e-09 Score=116.35 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=117.2
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEEechhhhcccCChHHHHH
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-EGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
.....++|++..++++..++.... .+.+.|+|++|+|||++|+++++.+.... ...+...+.... .....+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 87 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE----RGIDVVRH 87 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT----TCHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc----cChHHHHH
Confidence 344679999999999999997543 23489999999999999999998764432 222222122111 22333332
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChhhh-hh-cCcce
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQVL-KN-CRVDG 346 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~~~ 346 (1187)
.+.... ... .....++.+||+||++.. ...+.+...+.....+.++|+||+..... .. .....
T Consensus 88 ~~~~~~---~~~----------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 88 KIKEFA---RTA----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHH---TSC----------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHh---ccc----------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 222111 000 011357889999999764 33445554444345678899998875321 11 12234
Q ss_pred eEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhh
Q 001020 347 IYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGC 400 (1187)
Q Consensus 347 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~ 400 (1187)
.+++.+++.++..+++...+........ .+..+.+++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7999999999999999887653222212 25677888999999986655433
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1.7e-12 Score=136.41 Aligned_cols=111 Identities=24% Similarity=0.244 Sum_probs=56.9
Q ss_pred ccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCC
Q 001020 769 SLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLR 848 (1187)
Q Consensus 769 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 848 (1187)
.+..+++|++|++++|. +..+| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.... +|.+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-----l~~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-----LSGIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-----HHHHHHHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-----CCccccCC
Confidence 44444455555554433 22244 4445555555555555555555544444455555554443322 12234445
Q ss_pred CccEEeccCCCCCCccc--ccCCCCCCcEEECccCCCccc
Q 001020 849 ILTNLNLSDCGITELPN--SLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 849 ~L~~L~Ls~~~l~~l~~--~l~~l~~L~~L~L~~n~l~~l 886 (1187)
+|+.|+|++|.++.++. .+..+++|+.|++++|.+...
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 56666666666665443 456666666666666666533
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=5.1e-09 Score=122.22 Aligned_cols=281 Identities=13% Similarity=0.029 Sum_probs=158.7
Q ss_pred CCCCccchHHHHHHHHHhhcc----CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEEechhhhcccCChHH
Q 001020 193 DNKDLIGVESSIRQIESLLST----GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-EGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
.++.++||+.+++++..++.. .....+.+.|+|++|+||||||+++++...... ...+++. .... .....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~~~----~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-GFIY----RNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TTTC----CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-CccC----CCHHH
Confidence 347899999999999998864 222334899999999999999999999876542 2334443 2221 22334
Q ss_pred HHHHHhhccccCCC-CCCccccc--hhhc--ccCCceEEEEEcCCCCh--HHHHHHhccCCCCC----CCcEEEEEeCCh
Q 001020 268 LRQKLFSEDESLSV-GIPNVGLN--FRGK--RLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFT----SGSRIIITTRDK 336 (1187)
Q Consensus 268 l~~~ll~~~~~~~~-~~~~~~~~--~~~~--~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~----~gsrIIiTTR~~ 336 (1187)
+...+...+..... ........ .... ...+++.+||||+++.. ..+..|...+.... .+..||++|++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 44444433211100 00000000 0000 12366899999999763 44555555443222 467888888876
Q ss_pred hhhhhcC-------cceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHh---------ccCchhhHHHhh
Q 001020 337 QVLKNCR-------VDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFA---------QGVPLALKVLGC 400 (1187)
Q Consensus 337 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~---------~GlPLal~~~g~ 400 (1187)
.+..... ....+.+++++.++..+++...+...... ..-..+..+.+++++ +|.|..+..+..
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 4332221 11369999999999999998875421000 111235677888999 788755444332
Q ss_pred hhc------CC---CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhccc---CC--CCHHHHHH----H
Q 001020 401 FLF------GR---KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFF---KG--EDKDLVVE----F 462 (1187)
Q Consensus 401 ~L~------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~---~~--~~~~~l~~----~ 462 (1187)
... +. +.+....++..... ..+. -.+..|+..++.++..++.+. .+ .....+.. +
T Consensus 249 ~a~~~a~~~~~~~i~~~~v~~~~~~~~~---~~~~----~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 249 RSAYAAQQNGRKHIAPEDVRKSSKEVLF---GISE----EVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHSC---CCCH----HHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHhh---hhHH----HHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 211 21 33344444433321 1122 224567888888888777654 22 23333333 2
Q ss_pred HHhcCCc------cccchHhhhccccceee
Q 001020 463 LDASGFS------AEIGISVLVDKSLIIIL 486 (1187)
Q Consensus 463 ~~~~g~~------~~~~l~~L~~~sLi~~~ 486 (1187)
....|.. ....+..|.++++|...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 2233321 23457888899998774
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=2.9e-08 Score=115.68 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=73.8
Q ss_pred ccCCCCCCCEEeccCCCCCccCC-cccCCcccccEEEcccCcccccc-hhhhcCCCCCEEEccccCCCCcC--CccCCCC
Q 001020 769 SLCKLKSLQHLNLFGCTKVERLP-DEFGNLEALMEMKAVRSSIRELP-SSIVQLNNLYRLSFERYQGKSHM--GLRLPTM 844 (1187)
Q Consensus 769 ~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l 844 (1187)
.|.++++|+.+.+..+ +..++ ..|.+ .+|+.+.+ .+.++.++ ..+..+++|+.+.+.++...... ...-..|
T Consensus 221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred HhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 3445555555555431 22232 22333 45555555 33344443 34555666666666554332110 0112237
Q ss_pred CCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCC
Q 001020 845 SGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 845 ~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c 904 (1187)
.++++|+.+.|. +++..++ ..+.++++|+.|.|.. +++.++. .+.++ +|+.|.+.++
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS
T ss_pred hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC
Confidence 778888888887 4466665 4567788888888854 4777755 67777 8888888875
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=5.5e-09 Score=107.21 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=71.7
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCc
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSS 809 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~ 809 (1187)
+.++++++.++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34555555555555433 2456666666654433333345566666666666654333333345666666666666666
Q ss_pred ccccchh-hhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCC
Q 001020 810 IRELPSS-IVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITE 862 (1187)
Q Consensus 810 i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~ 862 (1187)
++.+|.. +..+++|+.|++++|..... ....+..+++|+.|+|++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSV---PDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEe---CHHHhcCCcccCEEEecCCCeec
Confidence 6666553 45666666666666654421 11125667778888888887664
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=4.2e-08 Score=114.30 Aligned_cols=57 Identities=9% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCC-CCCEEeec
Q 001020 844 MSGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLT-NLFLLKLS 902 (1187)
Q Consensus 844 l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~-~L~~L~L~ 902 (1187)
|.++++|+.|.|..+ ++.+. ..+.++ +|+.|.+.+|.+..++. .+.+++ +|+.|.+.
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 566667777777443 55543 445666 77777777777666554 344442 44455443
No 159
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=2.5e-11 Score=127.38 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=97.2
Q ss_pred cccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhh
Q 001020 738 AIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSI 817 (1187)
Q Consensus 738 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l 817 (1187)
.++.+|..+..+++|+.|+|++|.. ..+| .+..+++|+.|++++|. +..+|..+..+++|+.|++++|.++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 5666777788888888888887754 4466 77778888888888865 4467777777788888888888888876 57
Q ss_pred hcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccc-----------cCCCCCCcEEE
Q 001020 818 VQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNS-----------LGQLSSLHILF 877 (1187)
Q Consensus 818 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-----------l~~l~~L~~L~ 877 (1187)
..+++|+.|++++|...... .++.+..+++|+.|++++|.+...+.. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWG--EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHH--HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchh--HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 78888888888888765421 112367788899999999987653221 45566666665
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=7.1e-09 Score=117.59 Aligned_cols=184 Identities=17% Similarity=0.239 Sum_probs=113.5
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-CCc-eEEEEechhhhcccCChHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-FEG-SYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
...+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+++++.+... +.. .+.+ +... . .+...+.+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~---~-~~~~~i~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL-NASD---D-RGIDVVRN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE-CTTS---C-CSHHHHHT
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe-cCcc---c-cChHHHHH
Confidence 34679999999999999987543 2338899999999999999999976432 222 2222 2111 1 22333322
Q ss_pred HHhhccccCCCCCCccccchhhccc-CCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChhh-hhh-cCcc
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRL-SRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQV-LKN-CRVD 345 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~-~~~~ 345 (1187)
.+ ...... ...+ .+++.++|+||++.. ...+.|...+.....++++|+||+...- ... ....
T Consensus 92 ~~-~~~~~~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 92 QI-KHFAQK------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HH-HHHHHB------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HH-HHHHhc------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 11 111000 0012 346889999999763 3344444433333567888888876432 111 1223
Q ss_pred eeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh-hHHHh
Q 001020 346 GIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA-LKVLG 399 (1187)
Q Consensus 346 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa-l~~~g 399 (1187)
..+++.+++.++..+++...+........ .+....+++.++|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 48999999999999999887643222212 25677899999999954 44443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.90 E-value=7.7e-08 Score=112.34 Aligned_cols=164 Identities=14% Similarity=0.091 Sum_probs=99.8
Q ss_pred ccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCcccccchhhhcCCCCCEEE
Q 001020 748 CLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLS 827 (1187)
Q Consensus 748 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~ 827 (1187)
...+|+.+.+... ....-...+..+.+|+.+.+..+ ....-...+..+..|+.+....+.+.. ..+..+.+|+.+.
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVK 303 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEE
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccc
Confidence 3455666665432 11112234556667777777553 222233456666677766665543321 2455677777777
Q ss_pred ccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCC
Q 001020 828 FERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 828 l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
+... ... ..-..|.++.+|+.++|.++ ++.+. .++.++++|+.+.|..+ ++.++. .+.++++|+.++|...
T Consensus 304 l~~~--i~~--I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~- 376 (394)
T 4fs7_A 304 LLDS--VKF--IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR- 376 (394)
T ss_dssp ECTT--CCE--ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred cccc--cce--echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence 7543 111 11234778888998888643 66664 56778899999999766 777765 7889999999988642
Q ss_pred CCCcCCCCCCCCCeeecccccccccc
Q 001020 906 RLQSLPELPCNISDMDANCCTSLKEL 931 (1187)
Q Consensus 906 ~L~~lp~l~~sL~~L~i~~C~~L~~l 931 (1187)
++.+. -...+|++|+.+
T Consensus 377 -~~~~~--------~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 -LEQYR--------YDFEDTTKFKWI 393 (394)
T ss_dssp -GGGGG--------GGBCTTCEEEEE
T ss_pred -CEEhh--------heecCCCCCcEE
Confidence 33221 135688888875
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=3.6e-08 Score=111.96 Aligned_cols=188 Identities=18% Similarity=0.155 Sum_probs=116.0
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-Cc-eEEEEechhhhcccCChHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-EG-SYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~l~~l 268 (1187)
|....+++|++..++.+..++..+. .+.+.++|++|+||||+|+++++.+.... .. .+.+ +....... ..+...
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL-NASDERGI-NVIREK 96 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE-ETTCHHHH-HTTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe-eccccCch-HHHHHH
Confidence 3345679999999999999987653 33489999999999999999999764332 11 1222 21111000 111111
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChhh-hhhc-Cc
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQV-LKNC-RV 344 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~-~~ 344 (1187)
...+.... ....+++.++|+||++.. +..+.|...+.....+.++|+||....- .... ..
T Consensus 97 ~~~~~~~~----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 97 VKEFARTK----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHSC----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHhhC----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11111100 011256789999999754 4455555444444567889988876432 1111 12
Q ss_pred ceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhh
Q 001020 345 DGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCF 401 (1187)
Q Consensus 345 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~ 401 (1187)
...+++.+++.++..+++...+...... -..+....+++.++|.|..+..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 2478999999999999998876543322 12356778899999999866554433
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=2.2e-08 Score=102.29 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=64.1
Q ss_pred EEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcccc-cCCCCCCcEEECcc
Q 001020 802 EMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELPNS-LGQLSSLHILFRDR 880 (1187)
Q Consensus 802 ~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-l~~l~~L~~L~L~~ 880 (1187)
.+++++|.++.+|..+. ++|+.|++++|..... ....+.++++|+.|+|++|+++.+|.. +..+++|+.|+|++
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL---EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc---CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44444555555544332 4455555555443321 112356677788888888888877765 46788888888888
Q ss_pred CCCcccccc-ccCCCCCCEEeecCCC
Q 001020 881 NNFERIPTS-IIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 881 n~l~~lp~~-l~~L~~L~~L~L~~c~ 905 (1187)
|+|+.+|.. +..+++|+.|+|++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 888887764 7788888888888764
No 164
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=2.3e-08 Score=101.80 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=71.7
Q ss_pred eeEEEecCCCCCCCCCcccccccceEeCcCCCcccc-cccccccCCccEEEcCCCCCCcccCC-CCCCCCccEEecCCCC
Q 001020 593 LKYFHWNGYPLKAMPSYIHQENLIALEMPHSSVEKL-WGGAQQLVNLKYMDLSHSKQLTEIPD-LSLASNIEKLNLDGCS 670 (1187)
Q Consensus 593 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 670 (1187)
.+.++++++.+..+|..+ +.+|++|+|++|.|+.+ +..+..+++|++|+|++|++....+. |.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 356777777888887665 47788888888888877 44567788888888888876554444 6778888888888764
Q ss_pred Ccccccc-cccCCCcccEEEccCcc
Q 001020 671 SLLEIHP-SIKYLNKLAILSLRHCK 694 (1187)
Q Consensus 671 ~l~~~~~-~i~~L~~L~~L~L~~c~ 694 (1187)
+..++. .+..+++|++|+|++|.
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 444444 47777778888777765
No 165
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=2.5e-08 Score=101.44 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=58.9
Q ss_pred cceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccC
Q 001020 729 IEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRS 808 (1187)
Q Consensus 729 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n 808 (1187)
.+.|+++++.++.+|..+ .++|+.|+|++|......|..+..+++|++|+|++|......+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666777777777655 366777777776555555666666777777777765443333334566666666666666
Q ss_pred cccccchh-hhcCCCCCEEEccc
Q 001020 809 SIRELPSS-IVQLNNLYRLSFER 830 (1187)
Q Consensus 809 ~i~~lp~~-l~~l~~L~~L~l~~ 830 (1187)
.|+.+|.. +..+++|+.|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCC
Confidence 66665542 33333333333333
No 166
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=2.5e-08 Score=101.80 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=55.9
Q ss_pred ceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCccCCc-ccCCcccccEEEcccC
Q 001020 730 EELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVERLPD-EFGNLEALMEMKAVRS 808 (1187)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~n 808 (1187)
+.++++++.++.+|..+. ++|+.|+|++|......|..+.++++|++|+|++|.. ..+|. .+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCC
Confidence 456666677777776553 6677777777665555555666666666666666533 33333 3456666666666666
Q ss_pred cccccchh-hhcCCCCCEEEc
Q 001020 809 SIRELPSS-IVQLNNLYRLSF 828 (1187)
Q Consensus 809 ~i~~lp~~-l~~l~~L~~L~l 828 (1187)
.|+.+|.. +..+++|+.|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEEC
T ss_pred ccceeCHHHhccccCCCEEEe
Confidence 66655543 333333333333
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=5.7e-07 Score=104.96 Aligned_cols=290 Identities=16% Similarity=0.140 Sum_probs=163.1
Q ss_pred cccccceEeCcCCCcccccc-cccccCCccEEEcCCCCCCcccC--CCCCCCCccEEecCCCCCcccccccccCCCcccE
Q 001020 611 HQENLIALEMPHSSVEKLWG-GAQQLVNLKYMDLSHSKQLTEIP--DLSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAI 687 (1187)
Q Consensus 611 ~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~ 687 (1187)
++.+|+.++++.+ ++.++. .+..+.+|+.+.+..+ +..+. .|.++..++.....+...+ -...+..+.+|+.
T Consensus 92 ~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~ 166 (394)
T 4fs7_A 92 NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEY 166 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCE
T ss_pred CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccccccccCcccccc--chhhhcccCCCcE
Confidence 3455666666543 444443 2455666666555443 22222 2444443333333222111 1234566666666
Q ss_pred EEccCccCCcccCccc--cccccceeeccccCCCCcccccccccceEeecCccccccc-hhhhccCCCcEEeccCCCCCc
Q 001020 688 LSLRHCKCIKSLPTSI--HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELP-LSIECLSRLITLNLENCSRLE 764 (1187)
Q Consensus 688 L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~ 764 (1187)
+.+.++ +..++... ++.+|+.+.+.. + ++.++ ..+.++..|+.+.+.++ ..
T Consensus 167 i~l~~~--~~~I~~~~F~~c~~L~~i~l~~---------------------~-~~~I~~~~F~~~~~L~~i~~~~~--~~ 220 (394)
T 4fs7_A 167 VSLPDS--METLHNGLFSGCGKLKSIKLPR---------------------N-LKIIRDYCFAECILLENMEFPNS--LY 220 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCBCCCCT---------------------T-CCEECTTTTTTCTTCCBCCCCTT--CC
T ss_pred EecCCc--cceeccccccCCCCceEEEcCC---------------------C-ceEeCchhhccccccceeecCCC--ce
Confidence 666532 22333222 355555554433 1 22232 23556677777666543 22
Q ss_pred ccccccCCCCCCCEEeccCCCCCccC-CcccCCcccccEEEcccCcccccchhhhcCCCCCEEEccccCCCCcCCccCCC
Q 001020 765 CLSSSLCKLKSLQHLNLFGCTKVERL-PDEFGNLEALMEMKAVRSSIRELPSSIVQLNNLYRLSFERYQGKSHMGLRLPT 843 (1187)
Q Consensus 765 ~lp~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 843 (1187)
.+........+|+.+.+... ...+ ...+..+..|+.+.+..+...--...+..+..|+.+.+...... -..
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~------~~~ 292 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP------EKT 292 (394)
T ss_dssp EECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC------TTT
T ss_pred EeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec------ccc
Confidence 33334455678888888652 2233 34567788899998877654444456677888888877543311 123
Q ss_pred CCCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCCeee
Q 001020 844 MSGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCERLQSLPELPCNISDMD 921 (1187)
Q Consensus 844 l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~~L~~lp~l~~sL~~L~ 921 (1187)
+.++.+|+.+.+.++ +..+. ..+.++++|+.++|.. .++.++. .+.++.+|+.+.|..+ ++.++.- -
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------a 361 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------A 361 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT-------T
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH-------H
Confidence 778889999999764 66665 4567889999999974 4777865 7888999999988642 5555431 2
Q ss_pred cccccccccccCCccccCCCCCCCCceeeecCCCC
Q 001020 922 ANCCTSLKELSGLSILFTPTTWNSQGLNFINCFNL 956 (1187)
Q Consensus 922 i~~C~~L~~l~~~~~~~~~~~~~l~~L~~~~C~~L 956 (1187)
..+|++|+++. ++ ...... ...|.+|.+|
T Consensus 362 F~~C~~L~~i~-lp----~~~~~~-~~~F~~c~~L 390 (394)
T 4fs7_A 362 FQGCINLKKVE-LP----KRLEQY-RYDFEDTTKF 390 (394)
T ss_dssp BTTCTTCCEEE-EE----GGGGGG-GGGBCTTCEE
T ss_pred hhCCCCCCEEE-EC----CCCEEh-hheecCCCCC
Confidence 35677777664 11 011111 2347788776
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.70 E-value=3.6e-07 Score=103.56 Aligned_cols=258 Identities=17% Similarity=0.107 Sum_probs=147.8
Q ss_pred CCCCCccchHHHHHHHHHhhccC---CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHH
Q 001020 192 TDNKDLIGVESSIRQIESLLSTG---SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
...+++||++..++++..++... ....+.|.|+|++|+|||++|+++++.....| .++ +.... .....+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~~----~~~~~l 80 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPAI----EKPGDL 80 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTTC----CSHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ecccc----CChHHH
Confidence 35578999999999988887531 12235788999999999999999998774332 222 22111 112222
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCC------------------CCCcE
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWF------------------TSGSR 328 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~------------------~~gsr 328 (1187)
...+... ..+..+|+|||++... ..+.+...+... .++.+
T Consensus 81 ~~~l~~~--------------------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 81 AAILANS--------------------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp HHHHTTT--------------------CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred HHHHHHh--------------------ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 2221110 1245689999997643 233332211110 12456
Q ss_pred EEEEeCChhhhh-h--cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhhcC-
Q 001020 329 IIITTRDKQVLK-N--CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFLFG- 404 (1187)
Q Consensus 329 IIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L~~- 404 (1187)
+|.||....... . ......+++..++.+|..+++...+........ .+....++++++|.|-.+..+...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 777776532211 1 122357999999999999999887754332212 366788999999999887766554321
Q ss_pred -----C---CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccCC--CCHHHHHHHHHhcCCc---cc
Q 001020 405 -----R---KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFKG--EDKDLVVEFLDASGFS---AE 471 (1187)
Q Consensus 405 -----~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~g~~---~~ 471 (1187)
. +.+....++.. +...+..+++.++..+..+.....+ .....+.+.+ |.. ..
T Consensus 218 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHH
Confidence 1 23333333332 2234567788888888776644333 3455554443 322 11
Q ss_pred cchHh-hhccccceeeCCEEEehHh
Q 001020 472 IGISV-LVDKSLIIILKNKIIMHDL 495 (1187)
Q Consensus 472 ~~l~~-L~~~sLi~~~~~~~~mHdl 495 (1187)
..++. +++.++|........+-+.
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~ 307 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTEL 307 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHH
T ss_pred HHHhHHHHHhcchhcCCccceecHH
Confidence 22333 6777888766443444433
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=2.3e-09 Score=123.66 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCCCccEEeccCCCCCC-----cccccCCCCCCcEEECccCCCcc-----ccccccCCCCCCEEeecCC
Q 001020 846 GLRILTNLNLSDCGITE-----LPNSLGQLSSLHILFRDRNNFER-----IPTSIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 846 ~l~~L~~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~L~L~~c 904 (1187)
.+++|++|+|++|.+++ ++..+...++|+.|+|++|.|+. ++..+...++|++|+|++|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 34455555555555543 23444445556666666665552 2333444556666666655
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=4.1e-09 Score=121.65 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=76.1
Q ss_pred CCCcEEeccCCCCCccccccc-CCCCCCCEEeccCCCCCccCCcc----c-CCcccccEEEcccCcccc-----cchhhh
Q 001020 750 SRLITLNLENCSRLECLSSSL-CKLKSLQHLNLFGCTKVERLPDE----F-GNLEALMEMKAVRSSIRE-----LPSSIV 818 (1187)
Q Consensus 750 ~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~----l-~~l~~L~~L~l~~n~i~~-----lp~~l~ 818 (1187)
++|+.|+|++|.........+ ..+++|++|+|++|.....-... + ...++|++|++++|.|+. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555554322111111 12345556666655432211111 1 234556666666666652 444556
Q ss_pred cCCCCCEEEccccCCCCcCCccC-CCCCCCCCccEEeccCCCCCC-----cccccCCCCCCcEEECccCCCccc
Q 001020 819 QLNNLYRLSFERYQGKSHMGLRL-PTMSGLRILTNLNLSDCGITE-----LPNSLGQLSSLHILFRDRNNFERI 886 (1187)
Q Consensus 819 ~l~~L~~L~l~~~~~~~~~~~~l-~~l~~l~~L~~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l 886 (1187)
.+++|+.|+|++|.........+ ..+...++|+.|+|++|.+++ +...+...++|+.|+|++|.|+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 66677777777766433211111 114556688999999998885 445556678999999999988743
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=6.5e-07 Score=103.59 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=111.7
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCc---------------------eEE
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG---------------------SYF 251 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---------------------~~~ 251 (1187)
...+++|++..++.+...+..+. ....+.|+|++|+||||+|+++++.+...... ...
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE
Confidence 44679999999999999886543 23468899999999999999999876432210 000
Q ss_pred EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEE
Q 001020 252 LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRI 329 (1187)
Q Consensus 252 ~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrI 329 (1187)
+. ... ......+..+.+.+. .....+++.++|+||++.. ...+.+...+.....+..+
T Consensus 93 ~~-~~~-~~~~~~~~~l~~~~~------------------~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~ 152 (373)
T 1jr3_A 93 ID-AAS-RTKVEDTRDLLDNVQ------------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (373)
T ss_dssp EE-TTC-SCCSSCHHHHHHHTT------------------SCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEE
T ss_pred ec-ccc-cCCHHHHHHHHHHHh------------------hccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEE
Confidence 00 000 000001111111100 0012456789999999653 3455555544444556777
Q ss_pred EEEeCChh-hhhh-cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 330 IITTRDKQ-VLKN-CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 330 IiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
|++|.... +... ......+++.+++.++..+++...+-....... .+....+++.++|.|..+..+.
T Consensus 153 Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 87776542 2111 122367999999999999999876543222211 2557789999999998776654
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=6.4e-07 Score=101.10 Aligned_cols=183 Identities=11% Similarity=0.116 Sum_probs=114.2
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc-cCCc-eEEEEechhhhcccCChHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN-QFEG-SYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
..++++|++..++.+.+++..+. .+.+.++|++|+||||+|+++++.+.. .+.. .+.+ +....... ..+..+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 90 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-NASDERGI-DVVRHKIK 90 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE-ETTSTTCT-TTSSHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE-eCccccCh-HHHHHHHH
Confidence 34679999999999999887543 334889999999999999999987632 2221 1222 22111111 11122222
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-cCcce
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQ-VLKN-CRVDG 346 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~~~ 346 (1187)
.+.... + .-.+++.++|+|+++.. +..+.|...+.....+.++|+||.... +... .....
T Consensus 91 ~~~~~~---~-------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 91 EFARTA---P-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp HHHHSC---C-------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred HHHhcC---C-------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 221110 0 11256789999998754 345666666665567788888887643 2111 12234
Q ss_pred eEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 347 IYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 347 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.+++.+++.++..+++...+.......+ .+....+++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 7999999999999999887654332212 356678888899998765543
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=8.5e-08 Score=109.65 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=103.8
Q ss_pred ccchhhhccCCCcEEeccCCCC---------CcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccCccc
Q 001020 741 ELPLSIECLSRLITLNLENCSR---------LECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRSSIR 811 (1187)
Q Consensus 741 ~lp~~i~~l~~L~~L~L~~~~~---------l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~ 811 (1187)
.+..++..+++|+.|.+.+... ...++..+..+|+|+.|.|++|..+ .++. +. +++|+.|++..+.+.
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence 3445566778888888765321 1134455667889999999887433 3343 33 788999999888765
Q ss_pred c-cchhhh--cCCCCCEEEccccCCC--CcCCc-cC-CCC--CCCCCccEEeccCCCCCC-ccccc---CCCCCCcEEEC
Q 001020 812 E-LPSSIV--QLNNLYRLSFERYQGK--SHMGL-RL-PTM--SGLRILTNLNLSDCGITE-LPNSL---GQLSSLHILFR 878 (1187)
Q Consensus 812 ~-lp~~l~--~l~~L~~L~l~~~~~~--~~~~~-~l-~~l--~~l~~L~~L~Ls~~~l~~-l~~~l---~~l~~L~~L~L 878 (1187)
. ....+. .+++|+.|+|+.+... ...+. .+ +.+ ..+++|+.|+|++|.+.+ .+..+ ..+++|+.|+|
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 2 112333 6899999988642211 11000 01 112 357899999999988764 21111 35788999999
Q ss_pred ccCCCcc-----ccccccCCCCCCEEeecCCC
Q 001020 879 DRNNFER-----IPTSIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 879 ~~n~l~~-----lp~~l~~L~~L~~L~L~~c~ 905 (1187)
+.|.+.. ++..+.++++|+.|+|++|.
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 9888874 45556678888888888763
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=2.9e-06 Score=102.20 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=106.4
Q ss_pred CCCCCccchHHHHHHHHHhhccC---------------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEech
Q 001020 192 TDNKDLIGVESSIRQIESLLSTG---------------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVR 256 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 256 (1187)
....+++|++..++++.+++... .+..+.+.|+|++|+||||+|+++++... +. .+.+ +..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NAS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCC
Confidence 34467999999999999998641 01346899999999999999999998772 21 1222 221
Q ss_pred hhhcccCChHHHHHHHhhccccCCCCCCccccchh----hcccCCceEEEEEcCCCCh-----HHHHHHhccCCCCCCCc
Q 001020 257 EESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFR----GKRLSRKKIIIVFDDVTCS-----EQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 257 ~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~----~~~l~~kr~LlVLDDv~~~-----~~l~~l~~~~~~~~~gs 327 (1187)
.. ... .+.+...... ..... ...... .....+++.+||+|+++.. ..+..+...+. ..+.
T Consensus 112 ~~----~~~-~~~~~~i~~~--~~~~~--~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~ 180 (516)
T 1sxj_A 112 DV----RSK-TLLNAGVKNA--LDNMS--VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTST 180 (516)
T ss_dssp SC----CCH-HHHHHTGGGG--TTBCC--STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSS
T ss_pred Cc----chH-HHHHHHHHHH--hcccc--HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCC
Confidence 11 111 1222222211 11000 000000 0123467889999999643 11233322221 1244
Q ss_pred EEEEEeCChh---hhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch-hhHHH
Q 001020 328 RIIITTRDKQ---VLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL-ALKVL 398 (1187)
Q Consensus 328 rIIiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 398 (1187)
+||+++.+.. +.........+++++++.++..+.+...+........+ +....|++.++|.+- ++..+
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 5666665432 22222334579999999999999988776543322122 346778889999554 44444
No 175
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=4.4e-07 Score=103.92 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=72.0
Q ss_pred eEeecCc-cccccchhhhccCCCcEEeccC-CCCCcccccccCCCCCCCEEeccCCCCCccCCcccCCcccccEEEcccC
Q 001020 731 ELFLDGT-AIEELPLSIECLSRLITLNLEN-CSRLECLSSSLCKLKSLQHLNLFGCTKVERLPDEFGNLEALMEMKAVRS 808 (1187)
Q Consensus 731 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n 808 (1187)
.++++++ .++.+|. +..+++|+.|+|++ |......+..|.+|++|+.|+|++|......|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 7888888 88888888888886 4444444467888888888888887665556667888888888888888
Q ss_pred cccccchhhhcCCCCCEEEccccC
Q 001020 809 SIRELPSSIVQLNNLYRLSFERYQ 832 (1187)
Q Consensus 809 ~i~~lp~~l~~l~~L~~L~l~~~~ 832 (1187)
.|+.+|..+.....|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 888877654333235555554444
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=6.8e-07 Score=102.32 Aligned_cols=94 Identities=20% Similarity=0.134 Sum_probs=44.5
Q ss_pred CccCCcccCCcccccEEEccc-Ccccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEeccCCCCCCcc
Q 001020 787 VERLPDEFGNLEALMEMKAVR-SSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNLSDCGITELP 864 (1187)
Q Consensus 787 l~~lp~~l~~l~~L~~L~l~~-n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~ 864 (1187)
+..+|. +..+++|+.|+|++ |.|+.+|. .+..+++|+.|+|++|..... ....|.++++|+.|+|++|+|+.+|
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV---APDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE---CTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee---CHHHhcCCcCCCEEeCCCCccceeC
Confidence 344444 44444455555543 44444442 233334444443333332221 0112445556666666666666665
Q ss_pred cccCCCCCCcEEECccCCCc
Q 001020 865 NSLGQLSSLHILFRDRNNFE 884 (1187)
Q Consensus 865 ~~l~~l~~L~~L~L~~n~l~ 884 (1187)
..+....+|+.|+|.+|.|.
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp STTTCSCCCCEEECCSSCCC
T ss_pred HHHcccCCceEEEeeCCCcc
Confidence 44332223666666666665
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.37 E-value=5.3e-07 Score=97.19 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=100.8
Q ss_pred CCCCccchH---HHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHH
Q 001020 193 DNKDLIGVE---SSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLR 269 (1187)
Q Consensus 193 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 269 (1187)
..++++|.+ ..++.+..+...+ ..+.+.|+|++|+||||||+++++..........|+. ..+.... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI---S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---H----
Confidence 345688743 5556666666543 3467889999999999999999997765543445553 2221111 0
Q ss_pred HHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHH----HHHHhccCCCC-CCC-cEEEEEeCChh------
Q 001020 270 QKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQ----IKFLIGSLDWF-TSG-SRIIITTRDKQ------ 337 (1187)
Q Consensus 270 ~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~----l~~l~~~~~~~-~~g-srIIiTTR~~~------ 337 (1187)
... . .. ..++.+||+||++.... .+.+...+... ..+ .++|+||+...
T Consensus 96 ----~~~--~-------------~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 96 ----TAL--L-------------EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ----GGG--G-------------TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ----HHH--H-------------Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 000 0 01 13456899999864311 22222211100 122 25888887431
Q ss_pred ---hhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 338 ---VLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 338 ---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
+...+.....+++++++.++..+++...+........ .+....++++++|.+-.+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 1111122268999999999999999887653322212 3566788889999886665543
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=2.7e-05 Score=90.60 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=67.3
Q ss_pred cccCccccccCc-ccceEEEecCCCCCCCCceeccCCccccCCCeeEEEecCCC---CCCCCCc-c-cccccceEeCcCC
Q 001020 550 INLNPQTFIKMH-KLRFLKFYNSVDGEHKNKVHHFQGLDYVFSELKYFHWNGYP---LKAMPSY-I-HQENLIALEMPHS 623 (1187)
Q Consensus 550 ~~~~~~~f~~m~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~~~~L~~L~L~~~ 623 (1187)
..+...+|.+++ .|+.+.+-++. .......+.-..+|+.+.+..+. ++.++.. | .+.+|+.+.+..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~sv-------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~ 124 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDTV-------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS 124 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTTC-------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT
T ss_pred eEcCHhhccCCCCcCEEEEECCCe-------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc
Confidence 345677787774 47777664321 11222223334456666665432 3444332 2 4556666665543
Q ss_pred Ccccccc-cccccCCccEEEcCCCCCCcccCC--CCCCCCccEEecCCCCCcccccccccCCCcccEEEcc
Q 001020 624 SVEKLWG-GAQQLVNLKYMDLSHSKQLTEIPD--LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLR 691 (1187)
Q Consensus 624 ~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~ 691 (1187)
+..+.. .+..+.+|+.+.+..+ ...+++ |..+.+|+.+.+..+ +..+........+|+.+.+.
T Consensus 125 -~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 125 -VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp -CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEEC
T ss_pred -cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEEC
Confidence 444443 3466777777777543 233333 666777777777542 34444333333456666554
No 179
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.34 E-value=1.9e-06 Score=95.53 Aligned_cols=172 Identities=23% Similarity=0.283 Sum_probs=98.8
Q ss_pred CCCCccchHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcc
Q 001020 193 DNKDLIGVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESER 261 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 261 (1187)
..++++|++..+++|.+.+... ....+.+.|+|++|+|||+||+++++.....| +.+ ...+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v-~~~~~~~~ 90 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRV-VGSELVKK 90 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEE-EGGGGCCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-ehHHHHHh
Confidence 4467999999999998877431 12345688999999999999999998764432 111 22221111
Q ss_pred cCC-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCC--
Q 001020 262 TGG-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDW-- 322 (1187)
Q Consensus 262 ~~~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~-- 322 (1187)
..+ .......++.. ....++.+|+|||++.. ..+..+...+..
T Consensus 91 ~~~~~~~~~~~~~~~------------------~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 91 FIGEGASLVKDIFKL------------------AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp STTHHHHHHHHHHHH------------------HHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHH------------------HHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 011 11111111111 12234579999999643 123333322221
Q ss_pred CCCCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhcc
Q 001020 323 FTSGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQG 390 (1187)
Q Consensus 323 ~~~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~G 390 (1187)
...+..||.||....... ....+..+.++.++.++..+++..++.......... ...+++.+.|
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g 221 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEG 221 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTT
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCC
Confidence 234567778887543322 113446899999999999999988875433321222 2445555555
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=7.2e-06 Score=93.94 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=111.8
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc--cCCceEEEEechhhhcccCChHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN--QFEGSYFLQNVREESERTGGLSQL 268 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~l~~l 268 (1187)
|.....++|++..++.+..++..+.. ..+.|+|++|+||||+|+++++.+.. .+...+.-.+.... .+...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE----RGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC----CCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc----cchHHH
Confidence 34457799999999999999876532 23889999999999999999987642 12222211121110 222222
Q ss_pred HHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChh-hhhhc-Cc
Q 001020 269 RQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQ-VLKNC-RV 344 (1187)
Q Consensus 269 ~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~ 344 (1187)
.+.+............. ......-.+++-+|++|+++.. ...+.+...+.......++|++|.... +.... ..
T Consensus 107 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 107 REKVKNFARLTVSKPSK---HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp TTHHHHHHHSCCCCCCT---THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHhhhcccccch---hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22211100000000000 0001112245678999998653 233444433333345677887775532 21111 11
Q ss_pred ceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 345 DGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 345 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
...+++.+++.++..+.+...+.......+ .+..+.++++++|.|-.+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 247899999999999999887654332212 356788999999998765544
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.32 E-value=1.5e-06 Score=89.72 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
..+.++||+.+++++.+.+..+ ..+.+.|+|++|+||||+|+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999998653 2456789999999999999999987643
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.32 E-value=5.7e-06 Score=94.76 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHH
Q 001020 171 ESLLIEKIVGEILKRLNDMYRTDNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 171 e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
+..+++.+..++..+. .+...+.++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+++++
T Consensus 63 ~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4445555555543322 233446799999999999887642 112346788999999999999999998
Q ss_pred HhhccCCceEEEEechhhhcccCC-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh---------
Q 001020 241 RISNQFEGSYFLQNVREESERTGG-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--------- 310 (1187)
Q Consensus 241 ~~~~~F~~~~~~~~~~~~~~~~~~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--------- 310 (1187)
.....| +..+..+......+ .....+.++.. ....++.+|+||+++..
T Consensus 140 ~~~~~~----~~i~~~~l~~~~~g~~~~~~~~~~~~------------------a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 140 QSGATF----FSISASSLTSKWVGEGEKMVRALFAV------------------ARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HTTCEE----EEEEGGGGCCSSTTHHHHHHHHHHHH------------------HHHTCSEEEEEETHHHHTBC------
T ss_pred HcCCeE----EEEehHHhhccccchHHHHHHHHHHH------------------HHhcCCeEEEEeCchhhhccCCCCcc
Confidence 764322 22222221111011 11111111111 11245678999998432
Q ss_pred ----HHHHHHhccCC----CCCCCcEEEEEeCChhhhh-h--cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHH
Q 001020 311 ----EQIKFLIGSLD----WFTSGSRIIITTRDKQVLK-N--CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKE 379 (1187)
Q Consensus 311 ----~~l~~l~~~~~----~~~~gsrIIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~ 379 (1187)
..+..++..+. ....+..||.||.....+. . -.....+.+...+.++..+++...+........ .+
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~ 274 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EE 274 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HH
Confidence 11222322221 1123445666775532211 1 134457889999999999998877643322211 24
Q ss_pred HHHHHHHHhccC-chhhHHHhh
Q 001020 380 LSDRIIKFAQGV-PLALKVLGC 400 (1187)
Q Consensus 380 l~~~i~~~~~Gl-PLal~~~g~ 400 (1187)
....+++.+.|. +-.|..+..
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 567788888884 555555543
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.31 E-value=1.1e-05 Score=91.88 Aligned_cols=253 Identities=17% Similarity=0.124 Sum_probs=140.9
Q ss_pred CCCCccchHHHHHHHHHhhccC---CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTG---SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLR 269 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 269 (1187)
..++++|++..++++..++... ....+.|.|+|++|+|||++|++++++....| +.+ +.... .....+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~-~~~~~----~~~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTT-AAPMI----EKSGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEE-EGGGC----CSHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEe-cchhc----cchhHHH
Confidence 4567999999999999888642 23345688999999999999999988765443 112 11110 1112222
Q ss_pred HHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCC------------------CCCcEE
Q 001020 270 QKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWF------------------TSGSRI 329 (1187)
Q Consensus 270 ~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~------------------~~gsrI 329 (1187)
..+. . ..+..+|+||+++.. ...+.|...+... .++.++
T Consensus 99 ~~~~-~--------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 99 AILT-N--------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp HHHH-T--------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred HHHH-h--------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 2111 0 134568899999754 2233333222111 123566
Q ss_pred EEEeCChhhhh---hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhh----
Q 001020 330 IITTRDKQVLK---NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFL---- 402 (1187)
Q Consensus 330 IiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L---- 402 (1187)
|.+|....... ....+..+++..++.++..+++...+...... -..+..+.+++.+.|.|-.+..+...+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 66666532211 11234689999999999999998876543221 123566778888999986555443321
Q ss_pred --cCC---CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccCC--CCHHHHHHHHHhcCCccccchH
Q 001020 403 --FGR---KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFKG--EDKDLVVEFLDASGFSAEIGIS 475 (1187)
Q Consensus 403 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~g~~~~~~l~ 475 (1187)
.+. +.+....++.. +..+...++..+++.+..++-. .+ .....+.+.+....-.....++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 111 22333333222 2334455666666666666554 32 2355554443211111233344
Q ss_pred -hhhccccceee-CCEE
Q 001020 476 -VLVDKSLIIIL-KNKI 490 (1187)
Q Consensus 476 -~L~~~sLi~~~-~~~~ 490 (1187)
.|++.++|... .+++
T Consensus 302 ~~l~~~gli~~~~~g~~ 318 (338)
T 3pfi_A 302 PYLLANGYIERTAKGRI 318 (338)
T ss_dssp HHHHHTTSEEEETTEEE
T ss_pred HHHHHcCceecCCCccc
Confidence 67888888776 3443
No 184
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=1.9e-07 Score=106.71 Aligned_cols=186 Identities=13% Similarity=0.167 Sum_probs=107.7
Q ss_pred cccccceeeccccCCCCcccccccccceEeecCccccccchhhhccCCCcEEeccCCCCCcccccccCCCCCCCEEeccC
Q 001020 704 HLESLKQLFLSGCSNLNTFPEIACTIEELFLDGTAIEELPLSIECLSRLITLNLENCSRLECLSSSLCKLKSLQHLNLFG 783 (1187)
Q Consensus 704 ~l~~L~~L~Ls~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 783 (1187)
.+++|+.|.+.+... +...++......++..+..+++|+.|+|++|..+ .++. + .+++|++|+|..
T Consensus 137 ~l~~L~~L~l~~~~~-----------e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~ 202 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDF-----------EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS 202 (362)
T ss_dssp HHTTCSEEEECCCCT-----------TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred hcchhhheeecCcch-----------hhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence 467888888765321 0001111111234455667778888888776333 2332 3 377888888877
Q ss_pred CCCCccCCccc--CCcccccEEEccc--Cc------ccccchhh--hcCCCCCEEEccccCCCCcCCccCCCCCCCCCcc
Q 001020 784 CTKVERLPDEF--GNLEALMEMKAVR--SS------IRELPSSI--VQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILT 851 (1187)
Q Consensus 784 ~~~l~~lp~~l--~~l~~L~~L~l~~--n~------i~~lp~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~ 851 (1187)
|.........+ ..+++|+.|+|+. +. +..+...+ ..+++|+.|.+.+|.........+.....+++|+
T Consensus 203 ~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~ 282 (362)
T 2ra8_A 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282 (362)
T ss_dssp SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS
T ss_pred CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC
Confidence 65432222222 2577888888752 11 22222222 3578999999988775432111111123578999
Q ss_pred EEeccCCCCCC-----cccccCCCCCCcEEECccCCCccc-cccccC-CCCCCEEeecCCC
Q 001020 852 NLNLSDCGITE-----LPNSLGQLSSLHILFRDRNNFERI-PTSIIH-LTNLFLLKLSYCE 905 (1187)
Q Consensus 852 ~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~-L~~L~~L~L~~c~ 905 (1187)
+|+|+.|.+.+ ++..+..+++|+.|+|++|.++.- -..+.. + ...+++++..
T Consensus 283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99999999886 455556789999999999987621 112221 2 4567777643
No 185
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.19 E-value=9.1e-05 Score=86.12 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=78.7
Q ss_pred cccCccccccCcccceEEEecCCCCCCCCce-eccCCccccCCCeeEEEecCCCCCCCCCc-c-cccccceEeCcCCCcc
Q 001020 550 INLNPQTFIKMHKLRFLKFYNSVDGEHKNKV-HHFQGLDYVFSELKYFHWNGYPLKAMPSY-I-HQENLIALEMPHSSVE 626 (1187)
Q Consensus 550 ~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~ 626 (1187)
..+...+|.++.+|+.+.+.++.. ..+ ......+....+|+.+.+.. .+..++.. | .+.+|+.+.++.+ +.
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p----~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~lp~~-~~ 149 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKP----SCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTVTIPEG-VT 149 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCC----CCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEEECCTT-CC
T ss_pred eEEhHHHhhCCccCceEeecCCCC----CeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcccccccccce-ee
Confidence 456789999999999999875421 111 11122222233444444332 23444433 2 6788999999754 45
Q ss_pred ccc-ccccccCCccEEEcCCCCCCcccCC--CCCCCCccEEecCCCCCcccccccccCCCcccEEEccC
Q 001020 627 KLW-GGAQQLVNLKYMDLSHSKQLTEIPD--LSLASNIEKLNLDGCSSLLEIHPSIKYLNKLAILSLRH 692 (1187)
Q Consensus 627 ~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~~~~i~~L~~L~~L~L~~ 692 (1187)
.+. ..+..+.+|+.+.+..+ +..+.. |. ..+|+.+.+... ........+..+.+|.......
T Consensus 150 ~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 150 SVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred eecccceecccccccccccce--eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecccc
Confidence 554 34678999999999865 444443 54 467888888652 2222233456666666665543
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.18 E-value=2.2e-05 Score=88.49 Aligned_cols=174 Identities=18% Similarity=0.159 Sum_probs=99.2
Q ss_pred CCCCccchHHHHHHHHHhhc----------cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLS----------TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
.-++++|.+..+++|.+.+. ......+-|.++|++|+|||+||+++++.....| +..+..+.....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 91 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 91 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHTTT
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhhcc
Confidence 34678999999999988772 1122245688999999999999999998864433 221222211110
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH-------------HHHHHhccCC---CCCC
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE-------------QIKFLIGSLD---WFTS 325 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~-------------~l~~l~~~~~---~~~~ 325 (1187)
.......+.++.. ....++.+|+||+++... ....+...+. ....
T Consensus 92 ~g~~~~~~~~~f~~------------------a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 92 MGESEKLVKQLFAM------------------ARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp GGGHHHHHHHHHHH------------------HHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred cchHHHHHHHHHHH------------------HHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1111222222211 112356789999996431 1222322221 2234
Q ss_pred CcEEEEEeCChhhhhh---cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 326 GSRIIITTRDKQVLKN---CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
+..||.||.....+.. -..+..+.++..+.++..+++..++........ ......+++.+.|.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGY 219 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTC
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCC
Confidence 5566667765432210 134567889999999999999988754332211 23455677777663
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.17 E-value=1.6e-05 Score=88.65 Aligned_cols=197 Identities=20% Similarity=0.188 Sum_probs=107.2
Q ss_pred HHHHHHHhhcccc-cCCCCCccchHHHHHHHHHhhccC----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 178 IVGEILKRLNDMY-RTDNKDLIGVESSIRQIESLLSTG----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 178 i~~~i~~~l~~~~-~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
+++.+.+.+.... +...++++|.+..++.+.+.+... ....+.+.|+|++|+||||+|++++......|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 4455555444332 334467999999999998876320 11245788999999999999999998764332
Q ss_pred CceEEEEechhhhccc-CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HH
Q 001020 247 EGSYFLQNVREESERT-GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQ 312 (1187)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~ 312 (1187)
+.+ +........ .......+.++.. ....++.+|++|+++.. ..
T Consensus 83 ---~~i-~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~ 140 (297)
T 3b9p_A 83 ---LNI-SAASLTSKYVGDGEKLVRALFAV------------------ARHMQPSIIFIDEVDSLLSERSSSEHEASRRL 140 (297)
T ss_dssp ---EEE-ESTTTSSSSCSCHHHHHHHHHHH------------------HHHTCSEEEEEETGGGTSBCC-----CCSHHH
T ss_pred ---EEe-eHHHHhhcccchHHHHHHHHHHH------------------HHHcCCcEEEeccHHHhccccccCcchHHHHH
Confidence 112 221111110 1111222222111 11235678899998543 11
Q ss_pred HHHHhc---cCCCC--CCCcEEEEEeCChhhhh-h--cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHH
Q 001020 313 IKFLIG---SLDWF--TSGSRIIITTRDKQVLK-N--CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRI 384 (1187)
Q Consensus 313 l~~l~~---~~~~~--~~gsrIIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i 384 (1187)
...+.. ..+.. +.+..||.||.....+. . -.....+.++..+.++..+++...+-....+.. .+....+
T Consensus 141 ~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~l 217 (297)
T 3b9p_A 141 KTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRL 217 (297)
T ss_dssp HHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHH
Confidence 112221 11111 23456666776542111 1 023467888888888888888876643322211 2456678
Q ss_pred HHHhccCch-hhHHHh
Q 001020 385 IKFAQGVPL-ALKVLG 399 (1187)
Q Consensus 385 ~~~~~GlPL-al~~~g 399 (1187)
++.+.|.+- ++..+.
T Consensus 218 a~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 218 AKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHTTTCCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHH
Confidence 888888775 554443
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.17 E-value=7.7e-06 Score=89.93 Aligned_cols=197 Identities=15% Similarity=0.048 Sum_probs=99.5
Q ss_pred CCccchHHHHHHHHH-------hhcc-CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChH
Q 001020 195 KDLIGVESSIRQIES-------LLST-GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLS 266 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~ 266 (1187)
..++|....++++.. .+.. +....+.+.|+|++|+|||++|+++++.....| +.+...... .. ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g-~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IG-FSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TT-CCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cC-CchH
Confidence 346666655555444 2221 234467889999999999999999998754322 122121110 00 0111
Q ss_pred HHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh------------HHHHHHhccCCC---CCCCcEEEE
Q 001020 267 QLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS------------EQIKFLIGSLDW---FTSGSRIII 331 (1187)
Q Consensus 267 ~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~------------~~l~~l~~~~~~---~~~gsrIIi 331 (1187)
.....+... .......+..+|+|||++.. ..++.+...+.. .+....||.
T Consensus 108 ~~~~~~~~~---------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 108 AKCQAMKKI---------------FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HHHHHHHHH---------------HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HHHHHHHHH---------------HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 000111000 00012345789999998542 223334333322 233445677
Q ss_pred EeCChhhhhhc----CcceeEEecCCCH-HHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC------chhhHHHhh
Q 001020 332 TTRDKQVLKNC----RVDGIYEVEALLD-YYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV------PLALKVLGC 400 (1187)
Q Consensus 332 TTR~~~v~~~~----~~~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl------PLal~~~g~ 400 (1187)
||.....+... .....+++++++. ++..+++.... .. . .+....+++.+.|. +-++.++-.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~--~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF--K---DKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS--C---HHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC--C---HHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 78776444321 2246789998888 55555555421 11 1 24567788888773 232333222
Q ss_pred hhcCCCHHHHHHHHHHhhc
Q 001020 401 FLFGRKMEDWESAANKLKK 419 (1187)
Q Consensus 401 ~L~~~~~~~w~~~l~~l~~ 419 (1187)
.........++.+++.+..
T Consensus 245 a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 245 SLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HTTSCGGGHHHHHHHHHHH
T ss_pred HhhhchHHHHHHHHHHHHH
Confidence 2222234455565555543
No 189
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.16 E-value=6.9e-06 Score=91.11 Aligned_cols=165 Identities=9% Similarity=0.041 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHhhcc--CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC-------ceEEEEechhhhcccCChHH
Q 001020 197 LIGVESSIRQIESLLST--GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE-------GSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~~~l~~ 267 (1187)
+.||++++++|...|.. ..+....+.|+|++|.|||++|+++++++..... ..+++.+..-.+.. ..+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~-~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD-ALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH-HHHHH
Confidence 89999999999987753 2344568899999999999999999998753221 23344322211111 23344
Q ss_pred HHHHHhhccccCCCCCCc--cccchhhc-ccCCceEEEEEcCCCChH---HHHHHhccCCCCCCCcE--EEEEeCChhh-
Q 001020 268 LRQKLFSEDESLSVGIPN--VGLNFRGK-RLSRKKIIIVFDDVTCSE---QIKFLIGSLDWFTSGSR--IIITTRDKQV- 338 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~--~~~~~~~~-~l~~kr~LlVLDDv~~~~---~l~~l~~~~~~~~~gsr--IIiTTR~~~v- 338 (1187)
|.+++.... ....... ........ ...++++++|||+++... .+-.+..... ...++ ||.++...+.
T Consensus 101 I~~~L~g~~--~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 101 IWFAISKEN--LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSCCC
T ss_pred HHHHhcCCC--CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCcccc
Confidence 555543221 1100000 00000000 124678999999997642 2333332110 12333 3333433211
Q ss_pred --------hhhcCcceeEEecCCCHHHHHHHHHHhhh
Q 001020 339 --------LKNCRVDGIYEVEALLDYYALQLFSRHAF 367 (1187)
Q Consensus 339 --------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 367 (1187)
...++ ...+.+++++.+|-.+++..++-
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11222 24789999999999999887753
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.4e-05 Score=91.64 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=105.7
Q ss_pred CCCCCccchHHHHHHHHHhh-ccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEe----------------
Q 001020 192 TDNKDLIGVESSIRQIESLL-STGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQN---------------- 254 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---------------- 254 (1187)
...++++|.+..++.+.+++ ..+.. .. +.|+|+.|+||||+|+.++..+...-.+.+++..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34467999999999999988 54332 23 8999999999999999999865322211111100
Q ss_pred -------chhhhcccCC---hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCC
Q 001020 255 -------VREESERTGG---LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDW 322 (1187)
Q Consensus 255 -------~~~~~~~~~~---l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~ 322 (1187)
+......... +..+.+.+.... +... .. .. ..+.+++-++|||+++... ..+.+...+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~-~~--~l--s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQME---QVDF-QD--SK--DGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTT---C-----------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhc---cccc-cc--cc--cccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0000000000 111111111100 0000 00 00 0023467799999997642 23334333322
Q ss_pred CCCCcEEEEEeCCh-hhhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 323 FTSGSRIIITTRDK-QVLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 323 ~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
...+.++|++|.+. .+.... .....+++++++.++..+.+...+.......+ ..+....|++.++|.+-.+..+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 34567888888763 222211 22367999999999999999887643322111 0256778889999988655443
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.11 E-value=3e-05 Score=84.53 Aligned_cols=176 Identities=22% Similarity=0.263 Sum_probs=95.9
Q ss_pred CCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 194 NKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
.++++|.+..++++.+++.. +....+.+.|+|++|+|||++|+++++.....| +.+ +.........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhcc
Confidence 45788998888887765431 112335688999999999999999998764332 122 2221111100
Q ss_pred Ch-HHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-----------------HHHHHHhccCCCC--
Q 001020 264 GL-SQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-----------------EQIKFLIGSLDWF-- 323 (1187)
Q Consensus 264 ~l-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-----------------~~l~~l~~~~~~~-- 323 (1187)
+. ....+.++.. .....+.+|+||+++.. ..+..+...+...
T Consensus 81 ~~~~~~~~~~~~~------------------a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 GLGAARVRSLFKE------------------ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp THHHHHHHHHHHH------------------HHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ChhHHHHHHHHHH------------------HHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 0111111111 11234679999999764 1133333322221
Q ss_pred CCCcEEEEEeCChhhhh-h----cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch
Q 001020 324 TSGSRIIITTRDKQVLK-N----CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL 393 (1187)
Q Consensus 324 ~~gsrIIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL 393 (1187)
..+..||.||.....+. . ...+..+.++.++.++..+++..++...... .........+++.+.|.+-
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCH
Confidence 23456666776543221 1 1345688899999999999998876543322 2222234667777777653
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=1.7e-05 Score=88.88 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=87.2
Q ss_pred CccchHHHHHHHHHhhcc-------------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC--c-eEEEEechhhh
Q 001020 196 DLIGVESSIRQIESLLST-------------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE--G-SYFLQNVREES 259 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~ 259 (1187)
.++|.+..++.+.+++.. .......+.|+|++|+|||++|+++++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 478888888888765531 0233457889999999999999999987643221 1 12111221111
Q ss_pred cccCC-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCC-----------ChHHHHHHhccCCCCCCCc
Q 001020 260 ERTGG-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVT-----------CSEQIKFLIGSLDWFTSGS 327 (1187)
Q Consensus 260 ~~~~~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~-----------~~~~l~~l~~~~~~~~~gs 327 (1187)
....+ ...-...++. .. +.-+|+||+++ ....+..|...+.....+.
T Consensus 112 ~~~~g~~~~~~~~~~~-------------------~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLK-------------------RA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp CSSTTCHHHHHHHHHH-------------------HH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hhcccccHHHHHHHHH-------------------hc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 00000 0000011110 01 23489999997 3344555555444345567
Q ss_pred EEEEEeCChh----------hhhhcCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 328 RIIITTRDKQ----------VLKNCRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 328 rIIiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
+||.||.... +.. .....+++++++.++..+++...+..
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888886432 222 23468999999999999999887654
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.09 E-value=4.1e-05 Score=87.41 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=99.9
Q ss_pred CCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
.-.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+..+.....
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~~~ 124 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 124 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHSCC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhhhh
Confidence 345789999999999886621 111234588999999999999999999874332 221222111110
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH-------------HHHHHhccCC---CCCC
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE-------------QIKFLIGSLD---WFTS 325 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~-------------~l~~l~~~~~---~~~~ 325 (1187)
.......+.++.. ....++.+|+||+++... ....+...+. ....
T Consensus 125 ~g~~~~~~~~~f~~------------------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 125 MGESEKLVKQLFAM------------------ARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ---CHHHHHHHHHH------------------HHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred cchHHHHHHHHHHH------------------HHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 0011111111111 112467899999997431 1222322221 1234
Q ss_pred CcEEEEEeCChhhhh---hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC-chhhHHH
Q 001020 326 GSRIIITTRDKQVLK---NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV-PLALKVL 398 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~~ 398 (1187)
+..||.||.....+. .-..+..+.+...+.++..+++..++........ ......|++.+.|. +-.|..+
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 555666675442111 1145567899999999999999887644322111 23456777777774 4334443
No 194
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.0005 Score=79.33 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=72.2
Q ss_pred cCCCCCCCEEeccCCCCCccC-CcccCCcccccEEEcccCcccccch-hhhcCCCCCEEEccccCCCCcCCccCCCCCCC
Q 001020 770 LCKLKSLQHLNLFGCTKVERL-PDEFGNLEALMEMKAVRSSIRELPS-SIVQLNNLYRLSFERYQGKSHMGLRLPTMSGL 847 (1187)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l 847 (1187)
+....+|+.+.+... +..+ ...+..+..|+.+.+..+ ++.+.. .+..+.+|+.+.+...- .. .....|.++
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i--~~--i~~~aF~~c 285 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV--KT--VPYLLCSGC 285 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC--SE--ECTTTTTTC
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc--ee--ccccccccc
Confidence 334445555554331 1222 223445555666655443 333332 44556666666664321 11 112237778
Q ss_pred CCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeec
Q 001020 848 RILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLS 902 (1187)
Q Consensus 848 ~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~ 902 (1187)
.+|+.+.+.++.+..++ ..+.++.+|+.+.|.. +++.|+. .+.++++|+.+.|.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 88888888888888765 4567888999998864 3777765 56777777766653
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.02 E-value=7.4e-05 Score=84.01 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=98.1
Q ss_pred CCCccchHHHHHHHHHhhcc---------C-CCCeEEEEEEecCcchHHHHHHHHHHHh-hccCCceEEEEechhhhcc-
Q 001020 194 NKDLIGVESSIRQIESLLST---------G-SKDVYTLGIWGIGGIGKTTLAGAIFNRI-SNQFEGSYFLQNVREESER- 261 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~~~~- 261 (1187)
-++++|.+..++.|.+.+.. + ....+-|.++|++|+|||+||+++++.. ...| +..+..+....
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~----~~i~~~~l~~~~ 86 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF----FSISSSDLVSKW 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE----EEEECCSSCCSS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE----EEEEhHHHHhhh
Confidence 35688888888888765521 1 1223678899999999999999999876 2222 11122111100
Q ss_pred cCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCC---CCC
Q 001020 262 TGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDW---FTS 325 (1187)
Q Consensus 262 ~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~---~~~ 325 (1187)
........+.++.. ....++.+|++|+++.. .....+...+.. ...
T Consensus 87 ~g~~~~~~~~lf~~------------------a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 87 LGESEKLVKNLFQL------------------ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp CCSCHHHHHHHHHH------------------HHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred hhHHHHHHHHHHHH------------------HHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 01111222222211 11245678999999754 112233322221 134
Q ss_pred CcEEEEEeCChhhhh-h--cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC-chhhHHH
Q 001020 326 GSRIIITTRDKQVLK-N--CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV-PLALKVL 398 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~~ 398 (1187)
+..||.||....... . -..+..+.++..+.++..+++..++...... . .......+++.+.|. +-.|..+
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l--~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-L--TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-C--CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-C--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 455565665432211 1 1445678999999999999998876433221 1 123456677777776 3334443
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.02 E-value=8.6e-06 Score=95.80 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=99.4
Q ss_pred CCcc-chHHHH--HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCc--eEEEEechhhhcccCChHHHH
Q 001020 195 KDLI-GVESSI--RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEG--SYFLQNVREESERTGGLSQLR 269 (1187)
Q Consensus 195 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~ 269 (1187)
+.|| |..... ..+..+..... ....+.|+|++|+||||||+++++.+...++. .+++ +.... ...+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v-~~~~~------~~~~~ 176 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI-TSEKF------LNDLV 176 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE-EHHHH------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHH------HHHHH
Confidence 4566 644333 33333333222 25678999999999999999999987666533 2333 22111 11222
Q ss_pred HHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH----HHHHHhccCCC-CCCCcEEEEEeCCh--------
Q 001020 270 QKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE----QIKFLIGSLDW-FTSGSRIIITTRDK-------- 336 (1187)
Q Consensus 270 ~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~-------- 336 (1187)
..+... . . ......+..+.-+|+|||++... ..+.+...+.. ...|..||+||...
T Consensus 177 ~~~~~~-------~--~--~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 177 DSMKEG-------K--L--NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHTT-------C--H--HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHcc-------c--H--HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 222110 0 0 00011222256789999995422 22223222111 13577899998763
Q ss_pred -hhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 337 -QVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 337 -~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
.+...+....++.+++++.++..+++...+.......++ +....|++.++|.+-.+.-
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 222223223578899999999999998876432221122 3456777888888765443
No 197
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.02 E-value=3.6e-05 Score=88.61 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=102.7
Q ss_pred CCCccchHHHHHHHH---HhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 194 NKDLIGVESSIRQIE---SLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+++++.+....... .+ ..............+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AI-AGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EE-EGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cc-cchhhhhcccchhHHHH
Confidence 467999999877754 44443332335889999999999999999999876433211 11 11111111111111111
Q ss_pred HHhhcccc-----------------------------CCCCCCccccchh-------h-cccCCc----eEEEEEcCCCC
Q 001020 271 KLFSEDES-----------------------------LSVGIPNVGLNFR-------G-KRLSRK----KIIIVFDDVTC 309 (1187)
Q Consensus 271 ~ll~~~~~-----------------------------~~~~~~~~~~~~~-------~-~~l~~k----r~LlVLDDv~~ 309 (1187)
+.+..... ............. . ....++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 11111000 0000000000000 0 011122 35999999976
Q ss_pred h--HHHHHHhccCCCCCCCcEEEEEeCC-----------------hhhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCC
Q 001020 310 S--EQIKFLIGSLDWFTSGSRIIITTRD-----------------KQVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQN 370 (1187)
Q Consensus 310 ~--~~l~~l~~~~~~~~~gsrIIiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 370 (1187)
. +....+...+..... ..++++|.. ..+.. ....+++++++.++..+++...+....
T Consensus 201 l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp SBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4 335555554443332 244445431 12222 223589999999999999988775433
Q ss_pred CCCCchHHHHHHHHHHHhc-cCchhhHHH
Q 001020 371 QNADPSYKELSDRIIKFAQ-GVPLALKVL 398 (1187)
Q Consensus 371 ~~~~~~~~~l~~~i~~~~~-GlPLal~~~ 398 (1187)
.. --.+....+++++. |.|-.+..+
T Consensus 277 ~~---~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 VE---MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp CC---BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC---CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 12356778888887 777655543
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.00 E-value=5.5e-05 Score=87.73 Aligned_cols=182 Identities=18% Similarity=0.136 Sum_probs=99.2
Q ss_pred CCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
..++++|.+..++.|..++.. .....+-|.|+|++|+|||+||++++++....| +..+........
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 188 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTSKY 188 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhccc
Confidence 346799999999999887721 011235788999999999999999988754332 221221110000
Q ss_pred -CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccC----CCCC
Q 001020 263 -GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSL----DWFT 324 (1187)
Q Consensus 263 -~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~----~~~~ 324 (1187)
.........++.. ....++.+|+||+++.. .....+...+ ....
T Consensus 189 ~g~~~~~~~~~~~~------------------a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 189 VGEGEKLVRALFAV------------------ARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---CHHHHHHHHHH------------------HHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cchHHHHHHHHHHH------------------HHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0011111111111 11224568899999643 1112222111 1112
Q ss_pred CCcEEEEEeCChhhhh---hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCch-hhHHHh
Q 001020 325 SGSRIIITTRDKQVLK---NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPL-ALKVLG 399 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~g 399 (1187)
...+||.||.....+. .......+.+...+.++..+++...+-....... .+....+++.+.|..- ++..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 3345566665532211 1133457889999999999999887644332212 2456778888888644 554443
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.99 E-value=4e-05 Score=86.53 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=104.5
Q ss_pred cCCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 191 RTDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
|...++++|.+..++.+..++..+. ...++.+.|++|+|||++|+++++.+... .+.+ +... .+...+.+
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i-~~~~-----~~~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFV-NGSD-----CKIDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEE-ETTT-----CCHHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEE-cccc-----cCHHHHHH
Confidence 3445789999999999999997543 23567788999999999999999877422 2222 2111 22333333
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH---HHHHHhccCCCCCCCcEEEEEeCChhhh-hhc-Ccc
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE---QIKFLIGSLDWFTSGSRIIITTRDKQVL-KNC-RVD 345 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~-~~~ 345 (1187)
.+..... .....+++-++|+||++... ..+.|...+.....+.++|+||....-. ... ...
T Consensus 92 ~~~~~~~--------------~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 92 PLTNFAS--------------AASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHH--------------BCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHHh--------------hcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 2221110 00123477899999998754 3444443333233567888888764311 100 112
Q ss_pred eeEEecCCCHHHHHHHH-------HHhhhCCCCCCCchHHHHHHHHHHHhccCchhhH
Q 001020 346 GIYEVEALLDYYALQLF-------SRHAFGQNQNADPSYKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 346 ~~~~l~~L~~~ea~~Lf-------~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 396 (1187)
..++++.++.++-.+++ ...+.......++ .+....++++++|.+-.+.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 47999999988843332 2222221111011 2566778888888765433
No 200
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=3.3e-05 Score=79.08 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=41.7
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
....++|++.+++++.+.+... ..+.+.|+|++|+||||+|+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467999999999999988653 2456789999999999999999987644
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=0.00011 Score=86.55 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=100.5
Q ss_pred CCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
..++++|.+..++.|.+.+.. .....+.|.++|++|+|||+||+++++.... ..++..+..+.
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l---- 204 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDL---- 204 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHH----
Confidence 346799999999998876621 1122467889999999999999999987621 11111111110
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCCC---CCC
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDWF---TSG 326 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~~---~~g 326 (1187)
..... +........... .....++.+|+||+++.. .....++..+... ..+
T Consensus 205 ------~~~~~------g~~~~~~~~~f~-~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 205 ------VSKWL------GESEKLVKNLFQ-LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -------------------CCCTHHHHHH-HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ------Hhhhc------chHHHHHHHHHH-HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 00000 000000000000 011245678999999754 1234455444432 345
Q ss_pred cEEEEEeCChhhhh---hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC-chhhHHH
Q 001020 327 SRIIITTRDKQVLK---NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV-PLALKVL 398 (1187)
Q Consensus 327 srIIiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~~ 398 (1187)
..||.||.....+. .-..+..+.++..+.++..++|..++...... . .......|++.+.|. +-.|..+
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-L--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-C--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-C--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 66676776542221 11345678899999999999998876433211 0 123455677777774 3344333
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=0.0006 Score=78.66 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=24.2
Q ss_pred CCCCCCccEEeccCCCCCCcc-cccCCCCCCcEEECccCCCcccc
Q 001020 844 MSGLRILTNLNLSDCGITELP-NSLGQLSSLHILFRDRNNFERIP 887 (1187)
Q Consensus 844 l~~l~~L~~L~Ls~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~lp 887 (1187)
|.++.+|+.+.|..+ ++.|. .++.++++|+.+.|..+ ++.+.
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 556666666666533 44444 34566777777766433 55444
No 203
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.93 E-value=2.9e-05 Score=91.17 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=105.6
Q ss_pred cCCCCCccchHHHH---HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH
Q 001020 191 RTDNKDLIGVESSI---RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 191 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
|...+++||.+..+ +.+...+..+. ...+.|+|++|+||||+|+.+++.....|.. +... ..+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a~------~~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---ISAV------TSGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EETT------TCCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEec------cCCHHH
Confidence 34557899999888 67777776543 4678999999999999999999887544321 1111 133333
Q ss_pred HHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCCCCCCcEEEE-EeCChh--hhh-h
Q 001020 268 LRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDWFTSGSRIII-TTRDKQ--VLK-N 341 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~~~~gsrIIi-TTR~~~--v~~-~ 341 (1187)
+...+.... .....+++.+|+||+++... +.+.|...+.. ....+|. ||.+.. +.. .
T Consensus 91 ir~~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 91 IREAIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHHHH---------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 333222110 00123567899999997643 23333333321 2234444 444432 111 1
Q ss_pred cCcceeEEecCCCHHHHHHHHHHhhhCCCC----CCCchHHHHHHHHHHHhccCchhhHHH
Q 001020 342 CRVDGIYEVEALLDYYALQLFSRHAFGQNQ----NADPSYKELSDRIIKFAQGVPLALKVL 398 (1187)
Q Consensus 342 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~----~~~~~~~~l~~~i~~~~~GlPLal~~~ 398 (1187)
.....++.+++++.++..+++...+-.... ....-..+..+.++++++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 122357899999999999999887654111 001122356778888899987655543
No 204
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.86 E-value=5.2e-05 Score=85.62 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCCcc-chHH--HHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHH
Q 001020 194 NKDLI-GVES--SIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQ 270 (1187)
Q Consensus 194 ~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 270 (1187)
.++|| |... ....+..+..........+.|+|++|+||||||+++++.....-...+++ +.... ...+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i-~~~~~------~~~~~~ 82 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SADDF------AQAMVE 82 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHHHH------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE-EHHHH------HHHHHH
Confidence 44565 5332 23344454443322345788999999999999999999775431223344 22211 112222
Q ss_pred HHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH----HHHHHhccCCC-CCCCcEEEEEeCCh---------
Q 001020 271 KLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE----QIKFLIGSLDW-FTSGSRIIITTRDK--------- 336 (1187)
Q Consensus 271 ~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~--------- 336 (1187)
.+.... . .... ... .+.-+|+|||++... ..+.+...+.. ...|.+||+||...
T Consensus 83 ~~~~~~---------~-~~~~-~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 83 HLKKGT---------I-NEFR-NMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHTC---------H-HHHH-HHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHcCc---------H-HHHH-HHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 221100 0 0000 011 235689999985532 12222222110 13466888888643
Q ss_pred hhhhhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchh
Q 001020 337 QVLKNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLA 394 (1187)
Q Consensus 337 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLa 394 (1187)
.+...+....++++++ +.++..+++...+.......+ .+....+++++ |..-.
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 1222223335799999 999999999888754333212 35566777777 76543
No 205
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.79 E-value=0.00016 Score=81.83 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=101.8
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC---------------------ceEEEEechhhh
Q 001020 201 ESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE---------------------GSYFLQNVREES 259 (1187)
Q Consensus 201 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~~~~~~ 259 (1187)
+...+.+...+..+. -...+.++|++|+||||+|+.+++.+..... ...++. ..+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKG- 84 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTT-
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-cccc-
Confidence 444556666665432 2346889999999999999999987643321 111221 1000
Q ss_pred cccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChh
Q 001020 260 ERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQ 337 (1187)
Q Consensus 260 ~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 337 (1187)
....++..+++ +.... .. ....+++-++|+|+++.. +..+.|...+....++..+|++|.+..
T Consensus 85 ~~~~~i~~ir~-l~~~~---~~-----------~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 85 KNTLGVDAVRE-VTEKL---NE-----------HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp CSSBCHHHHHH-HHHHT---TS-----------CCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCCCHHHHHH-HHHHH---hh-----------ccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 00022222221 21111 00 012356778899999764 345566655554456778777776642
Q ss_pred -hhhhc-CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHh
Q 001020 338 -VLKNC-RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLG 399 (1187)
Q Consensus 338 -v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g 399 (1187)
+.... .....+++++++.++..+.+...+ .. + .+.+..+++.++|.|..+..+.
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~--~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM--S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC--C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC--C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 33221 234579999999999999988775 11 1 2455778899999997655443
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=4.8e-06 Score=85.67 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred cccCCCCCCCEEeccCC-CCCc----cCCcccCCcccccEEEcccCcccc-----cchhhhcCCCCCEEEccccCCCCcC
Q 001020 768 SSLCKLKSLQHLNLFGC-TKVE----RLPDEFGNLEALMEMKAVRSSIRE-----LPSSIVQLNNLYRLSFERYQGKSHM 837 (1187)
Q Consensus 768 ~~l~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~l~~n~i~~-----lp~~l~~l~~L~~L~l~~~~~~~~~ 837 (1187)
..+...++|++|+|++| .... .+...+...++|++|++++|.|.. +...+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~------------------ 91 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV------------------ 91 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH------------------
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh------------------
Confidence 34566677777777776 3221 123344455566666666665542 2222222
Q ss_pred CccCCCCCCCCCccEEeccCCCCCC-----cccccCCCCCCcEEEC--ccCCCcc-----ccccccCCCCCCEEeecCC
Q 001020 838 GLRLPTMSGLRILTNLNLSDCGITE-----LPNSLGQLSSLHILFR--DRNNFER-----IPTSIIHLTNLFLLKLSYC 904 (1187)
Q Consensus 838 ~~~l~~l~~l~~L~~L~Ls~~~l~~-----l~~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~L~~L~~L~L~~c 904 (1187)
.++|++|+|++|.+.+ +...+...++|+.|+| ++|.|.. +...+...++|+.|+|++|
T Consensus 92 ---------n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 ---------NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp ---------CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred ---------CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3345555555555553 3444455556666666 5565542 3334444555666666554
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.77 E-value=0.00018 Score=80.07 Aligned_cols=153 Identities=22% Similarity=0.264 Sum_probs=86.9
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
++++|.+..+++|.+.+.. +-...+.|.|+|++|+|||+||+++++.....| +.+ +..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v-~~~------- 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI-KGP------- 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE-CHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE-EhH-------
Confidence 5688888888888776542 122345789999999999999999998764322 112 111
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH----------------HHHHHhccCCC--CCC
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE----------------QIKFLIGSLDW--FTS 325 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~----------------~l~~l~~~~~~--~~~ 325 (1187)
.+....... .......... ......+.+|++|+++... ....++..+.. ...
T Consensus 84 ---~l~~~~~g~------~~~~~~~~f~-~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ---ELLTMWFGE------SEANVREIFD-KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp ---HHHHHHHTT------CTTHHHHHHH-HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred ---HHHhhhcCc------hHHHHHHHHH-HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 121222111 0000100000 0112456899999997421 12233322211 123
Q ss_pred CcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 326 GSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
+..||.||.....+. ....+..+.++..+.++-.+++..+.-.
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 556777776543221 1134568999999999999988776643
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00037 Score=79.07 Aligned_cols=182 Identities=13% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEechhhhcccCChHHHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFLQNVREESERTGGLSQLRQK 271 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ 271 (1187)
....++|.+..++.+...+..+. ...+.++|++|+||||+|+.++..+... +...+.-.+... . .+...+++.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~---~-~~~~~ir~~ 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD---D-RGIDVVRNQ 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS---C-CSHHHHHTH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc---c-ccHHHHHHH
Confidence 34567899988898988887543 3338899999999999999999876432 211111111111 1 233333322
Q ss_pred HhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCChh-hhhh-cCccee
Q 001020 272 LFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDKQ-VLKN-CRVDGI 347 (1187)
Q Consensus 272 ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~-~~~~~~ 347 (1187)
+. .. ... .....+.+-++|+|+++.. ...+.|...+.......++|++|.... +... ......
T Consensus 97 i~-~~---~~~---------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 97 IK-DF---AST---------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HH-HH---HHB---------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HH-HH---Hhh---------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 21 11 000 0011234678899998643 333444433332345667777775532 2111 122347
Q ss_pred EEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhH
Q 001020 348 YEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALK 396 (1187)
Q Consensus 348 ~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 396 (1187)
+++.+++.++..+.+...+-....... .+..+.+++.++|.+--+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 899999999998888776633222212 2566788899999876433
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00022 Score=81.02 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||+++++.....| +.....+......
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 5678888888888775432 223346688999999999999999999876554 2222322222211
Q ss_pred C-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCCC--
Q 001020 264 G-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWFT-- 324 (1187)
Q Consensus 264 ~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~~-- 324 (1187)
+ -....+.++... -...+.+|++|+++.. ..+..++..++.+.
T Consensus 224 Gese~~vr~lF~~A------------------r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 224 GEGSRMVRELFVMA------------------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp THHHHHHHHHHHHH------------------HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred chHHHHHHHHHHHH------------------HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 1 112222333221 1245788999998642 01333443333222
Q ss_pred CCcEEEEEeCChhhh-----hhcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 325 SGSRIIITTRDKQVL-----KNCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.+..||.||...+.+ ..-..+..++++..+.++..++|..+.-+.......++ ..+++.+.|.
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~ 353 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGC 353 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCC
Confidence 333456666554322 12246778999999999999999887644332212333 3455556554
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=7.9e-06 Score=84.05 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=79.6
Q ss_pred cchhhhccCCCcEEeccCC-CCCc----ccccccCCCCCCCEEeccCCCCCc----cCCcccCCcccccEEEcccCcccc
Q 001020 742 LPLSIECLSRLITLNLENC-SRLE----CLSSSLCKLKSLQHLNLFGCTKVE----RLPDEFGNLEALMEMKAVRSSIRE 812 (1187)
Q Consensus 742 lp~~i~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~~ 812 (1187)
+...+...++|+.|+|++| .... .+...+...++|++|+|++|.... .+...+...++|++|++++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4445677899999999998 5432 355667888999999999987543 234455666889999999999873
Q ss_pred -----cchhhhcCCCCCEEEccccCCCCcCCccCCCCCCCCCccEEec--cCCCCCC-----cccccCCCCCCcEEECcc
Q 001020 813 -----LPSSIVQLNNLYRLSFERYQGKSHMGLRLPTMSGLRILTNLNL--SDCGITE-----LPNSLGQLSSLHILFRDR 880 (1187)
Q Consensus 813 -----lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~~L~~L~L--s~~~l~~-----l~~~l~~l~~L~~L~L~~ 880 (1187)
+...+... ++|++|+| ++|.+++ +...+...++|+.|+|++
T Consensus 108 ~g~~~l~~~L~~n---------------------------~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 108 SGILALVEALQSN---------------------------TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHGGGGC---------------------------SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhC---------------------------CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 33344333 34555566 5565553 344455567788888877
Q ss_pred CCCc
Q 001020 881 NNFE 884 (1187)
Q Consensus 881 n~l~ 884 (1187)
|.+.
T Consensus 161 n~i~ 164 (185)
T 1io0_A 161 TQQG 164 (185)
T ss_dssp SSHH
T ss_pred CCCC
Confidence 7664
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00046 Score=79.76 Aligned_cols=172 Identities=21% Similarity=0.339 Sum_probs=99.2
Q ss_pred CCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
-+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 35688999999888875532 223356788999999999999999999876543 222332222221
Q ss_pred CCh-HHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC--
Q 001020 263 GGL-SQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF-- 323 (1187)
Q Consensus 263 ~~l-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~-- 323 (1187)
.+- ....+.++.. .-...+.+|++|+++.. ..+..++..++.+
T Consensus 256 ~Gese~~ir~~F~~------------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 256 IGESARIIREMFAY------------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp SSHHHHHHHHHHHH------------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred chHHHHHHHHHHHH------------------HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 111 1222222221 11246788999998531 0133344333222
Q ss_pred CCCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 324 TSGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 324 ~~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
..+..||.||-..+.+. ....+..++++..+.++..++|..+.-+.......++ ..+++.+.|.
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 23456677776543332 1135678999999999999999877654332213333 3444555554
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.60 E-value=0.00021 Score=84.67 Aligned_cols=153 Identities=21% Similarity=0.229 Sum_probs=87.5
Q ss_pred CCCccchHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
...++|.+..+++|.+++... ....+-|.|+|++|+|||++|+++++.....| +..+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhh
Confidence 356899999999998877531 22345688999999999999999998763322 222322221110
Q ss_pred CCh-HHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCC--CCCC
Q 001020 263 GGL-SQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDW--FTSG 326 (1187)
Q Consensus 263 ~~l-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~--~~~g 326 (1187)
.+- ..-.+.++.. ...+++.+|+||+++.. .....|...+.. ...+
T Consensus 279 ~g~~~~~~~~~f~~------------------A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 AGESESNLRKAFEE------------------AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp TTHHHHHHHHHHHH------------------HHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred cchhHHHHHHHHHH------------------HHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 110 0111111111 12345678999998311 112223222211 1234
Q ss_pred cEEEEEeCChhh-----hhhcCcceeEEecCCCHHHHHHHHHHhhhC
Q 001020 327 SRIIITTRDKQV-----LKNCRVDGIYEVEALLDYYALQLFSRHAFG 368 (1187)
Q Consensus 327 srIIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 368 (1187)
.+||.||..... .........+.+...+.++-.+++..++..
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 566667765422 111234567999999999999999887643
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.58 E-value=0.00089 Score=75.64 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=132.0
Q ss_pred CCCCccchHHHHHHHHHhhccC---CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHH
Q 001020 193 DNKDLIGVESSIRQIESLLSTG---SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLR 269 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 269 (1187)
....++|.+..++.+...+..+ ......++++|++|.||||||+.++..+...|. ... .... .....+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~~---~~~~~l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPVL---VKQGDMA 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTTC---CSHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chHh---cCHHHHH
Confidence 3456788888778777766432 122357899999999999999999997754321 111 1100 1111111
Q ss_pred HHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCC--------C----------CCcEE
Q 001020 270 QKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWF--------T----------SGSRI 329 (1187)
Q Consensus 270 ~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~--------~----------~gsrI 329 (1187)
. +.. .+. ++-++++|++... ...+.+....... + +...+
T Consensus 95 ~-~~~-------------------~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 95 A-ILT-------------------SLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp H-HHH-------------------HCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred H-HHH-------------------Hcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1 110 011 2336677877542 2233332111100 0 11122
Q ss_pred E-EEeCChhhhhhc--CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCchhhHHHhhhh----
Q 001020 330 I-ITTRDKQVLKNC--RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVPLALKVLGCFL---- 402 (1187)
Q Consensus 330 I-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~g~~L---- 402 (1187)
+ .|++...+.... ...-...+++.+.++-.+++.+.+-..... ...+.+..|++.++|.|-.+..+...+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2 344433222111 223458899999999999998876432222 223668889999999996543332211
Q ss_pred --cCC---CHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCHHHHHHHhhhhcccCC--CCHHHHHHHHHhcCCccccchH
Q 001020 403 --FGR---KMEDWESAANKLKKVPHLDIQKVLKASYDGLDDEEQNIFLDIACFFKG--EDKDLVVEFLDASGFSAEIGIS 475 (1187)
Q Consensus 403 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~g~~~~~~l~ 475 (1187)
.+. +.+.-+.+++.+. ....+|+...+..+..++-.+.+ ...+.+...........+...+
T Consensus 231 ~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 111 3333333333322 11235566655555544433233 2344444333221101111122
Q ss_pred -hhhccccceee-CCEEEehHhhhhhh
Q 001020 476 -VLVDKSLIIIL-KNKIIMHDLLQGMG 500 (1187)
Q Consensus 476 -~L~~~sLi~~~-~~~~~mHdll~~~~ 500 (1187)
.|.+.++|+.. .+++....-.+.++
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~~~~~~~~ 325 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTEKAYKHLK 325 (334)
T ss_dssp HHHHHTTSEEEETTEEEECHHHHHHTT
T ss_pred HHHHHcCCeecccccHHhhHHHHHHhC
Confidence 67888998887 55554444444443
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00021 Score=82.47 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=98.1
Q ss_pred CCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
-+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||+++++.....| +.....+.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 35789999999888875421 223356788999999999999999999875543 222332222221
Q ss_pred CC-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------H---HHHHHhccCCCCC-
Q 001020 263 GG-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------E---QIKFLIGSLDWFT- 324 (1187)
Q Consensus 263 ~~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~---~l~~l~~~~~~~~- 324 (1187)
.+ -....+.++... -...+.+|++|+++.. . .+..++..++.+.
T Consensus 256 vGese~~ir~lF~~A------------------~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 256 IGEGAKLVRDAFALA------------------KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp SSHHHHHHHHHHHHH------------------HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred cchHHHHHHHHHHHH------------------HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 11 112223333221 1234688999998421 0 1233444444333
Q ss_pred -CCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 325 -SGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 325 -~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.+.-||.||...+.+. ....+..++++..+.++..++|..+.-+.......++ ..+++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 2334555765543322 1245678999999999999999877644332212233 3445555553
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.56 E-value=7.9e-05 Score=73.10 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=35.1
Q ss_pred CccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 196 DLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+++|+...++++.+.+..-...-.-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999998888774322222357799999999999999999754
No 216
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=3.1e-05 Score=77.67 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=16.4
Q ss_pred cccceEeCcCCCcccc-cccccccCCccEEEcCCCC
Q 001020 613 ENLIALEMPHSSVEKL-WGGAQQLVNLKYMDLSHSK 647 (1187)
Q Consensus 613 ~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~ 647 (1187)
.+|++|+++++.|... ...+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 3455666665554432 1122344455555555544
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0011 Score=76.47 Aligned_cols=171 Identities=21% Similarity=0.280 Sum_probs=97.6
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+......
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 5689999999998875421 223456788999999999999999999876544 2222222221111
Q ss_pred Ch-HHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCCC--
Q 001020 264 GL-SQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWFT-- 324 (1187)
Q Consensus 264 ~l-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~~-- 324 (1187)
+- ....+.++... -...+.+|++|+++.. ..+..++..+..+.
T Consensus 285 Gesek~ir~lF~~A------------------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 285 GEGARMVRELFEMA------------------RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp SHHHHHHHHHHHHH------------------HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred CHHHHHHHHHHHHH------------------HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 12222222221 1245788999988532 01222333332222
Q ss_pred CCcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 325 SGSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.+..||.||-....+. .-..+..++++..+.++-.++|..+.-+.......++ ..+++.+.|.
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 2334455664432221 1246788999999999999999887644332212233 3455566654
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.00067 Score=73.54 Aligned_cols=151 Identities=23% Similarity=0.272 Sum_probs=80.7
Q ss_pred CCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
..++++|.+..++++.+++.. +....+-+.|+|++|+||||||+++++.....| +.+ +........
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHHh
Confidence 345688988888777665421 011133588999999999999999998764332 222 111110000
Q ss_pred --CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC-
Q 001020 263 --GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF- 323 (1187)
Q Consensus 263 --~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~- 323 (1187)
.....+. .++.. .....+.++++|+++.. ..+..+...+...
T Consensus 86 ~~~~~~~~~-~~~~~------------------a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 86 VGVGASRVR-DMFEQ------------------AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp CCCCHHHHH-HHHHH------------------HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred hhhhHHHHH-HHHHH------------------HHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 0111111 11110 11234578899998321 1223333222211
Q ss_pred -CCCcEEEEEeCChhhh-hhc----CcceeEEecCCCHHHHHHHHHHhh
Q 001020 324 -TSGSRIIITTRDKQVL-KNC----RVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 324 -~~gsrIIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
..+..||.||...... ... ..+..+.++..+.++-.+++..+.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2345666677654322 111 235678888888888888887765
No 219
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.48 E-value=0.00069 Score=80.26 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------CceEEEEechhhhcc--cCC
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------EGSYFLQNVREESER--TGG 264 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~--~~~ 264 (1187)
..+.+|||+.+++++...|.... ..-+.++|++|+|||++|+.+++.+...+ ...++..+....... ...
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~ 255 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDR 255 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTT
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHH
Confidence 44679999999999999986533 23567999999999999999999874432 111221111100000 000
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhh----
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLK---- 340 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~---- 340 (1187)
+.. ++.. ....++.+|++| ...+....|...+. ....++|.+|.......
T Consensus 256 ~~~----~~~~------------------~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 256 LKK----VMDE------------------IRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp HHH----HHHH------------------HHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred HHH----HHHH------------------HHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 011 1111 112456788899 22222333443332 22356666555443111
Q ss_pred --h-cCcceeEEecCCCHHHHHHHHHHhh
Q 001020 341 --N-CRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 341 --~-~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
. ......+.++.++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 0112369999999999999998765
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00077 Score=76.82 Aligned_cols=171 Identities=22% Similarity=0.278 Sum_probs=96.3
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||+++++.....| +..+..+......
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccC
Confidence 5678899988888875431 223346788999999999999999999876544 2222322222211
Q ss_pred C-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCCC--
Q 001020 264 G-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWFT-- 324 (1187)
Q Consensus 264 ~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~~-- 324 (1187)
+ -....+.++... -...+.+|++|+++.. ..+..++..++.+.
T Consensus 258 Gesek~ir~lF~~A------------------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 258 GDGPRLCRQIFKVA------------------GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SHHHHHHHHHHHHH------------------HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred chHHHHHHHHHHHH------------------HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 1 122233333221 1235678888887531 11223333222222
Q ss_pred CCcEEEEEeCChhhhh-hc----CcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 325 SGSRIIITTRDKQVLK-NC----RVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.+..||.||-..+.+. .. ..+..++++..+.++..++|..+.-+.......++. .+++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~----~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLE----TLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHH----HHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCC
Confidence 3345566665544332 11 346678899999999999998876443322123333 444555554
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.42 E-value=0.00037 Score=89.21 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=42.0
Q ss_pred CCCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 192 TDNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 192 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
...+.+|||+.+++++...|.... .+.+.++|.+|+||||+|+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999886533 335789999999999999999998743
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0017 Score=82.27 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc------CCceEEEEechhhhc---ccC
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ------FEGSYFLQNVREESE---RTG 263 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~---~~~ 263 (1187)
..+.++||+.+++++.+.|.... ..-+.|+|.+|+||||+|+.+++++... ....+|..+...... ...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 44679999999999999987543 3456899999999999999999876332 123333222211100 001
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------HHHHHHhccCCCCCCCcEEEEEe
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------EQIKFLIGSLDWFTSGSRIIITT 333 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------~~l~~l~~~~~~~~~gsrIIiTT 333 (1187)
......+.++..+ ...++.+|++|+++.. .+...++..+.. ..+.++|.+|
T Consensus 262 ~~e~~l~~~~~~~------------------~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 262 DFEKRFKALLKQL------------------EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp CHHHHHHHHHHHH------------------SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred hHHHHHHHHHHHH------------------HhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 1111112222111 1234688999999754 222233322221 2345666666
Q ss_pred CChhhhhhc-------CcceeEEecCCCHHHHHHHHHHhh
Q 001020 334 RDKQVLKNC-------RVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 334 R~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
......... ..-..+.++.++.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 543321111 112368999999999988887543
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.33 E-value=0.00023 Score=77.81 Aligned_cols=54 Identities=28% Similarity=0.323 Sum_probs=39.2
Q ss_pred CCCCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 193 DNKDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
..+.++|.+..++++.+.+.. +....+-+.|+|++|+|||+||+++++.....|
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 346789998888888776541 111123477999999999999999999765443
No 224
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00054 Score=75.97 Aligned_cols=146 Identities=9% Similarity=0.069 Sum_probs=89.0
Q ss_pred chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh---ccCCceEEEEechhhhcccCChHHHHHHHhhc
Q 001020 199 GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS---NQFEGSYFLQNVREESERTGGLSQLRQKLFSE 275 (1187)
Q Consensus 199 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 275 (1187)
|-+..++.+...+..+. .....++|++|.||||+|+++++... ........+... ....++.++++ +...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~ir~-li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIRT-IKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHHHH-HHHH
Confidence 33455667777776554 67888999999999999999987531 122333344211 11134444443 2222
Q ss_pred cccCCCCCCccccchhhcccCCceEEEEEcCCCCh--HHHHHHhccCCCCCCCcEEEEEeCCh-hhhhhcCcceeEEecC
Q 001020 276 DESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS--EQIKFLIGSLDWFTSGSRIIITTRDK-QVLKNCRVDGIYEVEA 352 (1187)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~l~~ 352 (1187)
.... -..+++-++|+|+++.. ...+.|+..+....+.+++|++|.+. .+....... .+++++
T Consensus 74 ~~~~--------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 74 LNYS--------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp HTSC--------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred Hhhc--------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 2101 11245678889999753 34566665555445677888777553 444443333 899999
Q ss_pred CCHHHHHHHHHHhh
Q 001020 353 LLDYYALQLFSRHA 366 (1187)
Q Consensus 353 L~~~ea~~Lf~~~a 366 (1187)
++.++..+.+...+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999888775
No 225
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.30 E-value=0.00018 Score=72.20 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCCcEEeccCCCCCcccccccCCCCCCCEEeccCCCCCc
Q 001020 750 SRLITLNLENCSRLECLSSSLCKLKSLQHLNLFGCTKVE 788 (1187)
Q Consensus 750 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 788 (1187)
.+|+.|++++|.....--..+..+++|++|+|++|..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 356666666665333333345667777777777776543
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.30 E-value=0.0004 Score=75.76 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=33.9
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+.++|.+..++++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999888887766543111224677999999999999999998653
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.28 E-value=0.0022 Score=75.32 Aligned_cols=172 Identities=20% Similarity=0.275 Sum_probs=93.6
Q ss_pred CCccchHHHHHHHHHhhcc----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCC
Q 001020 195 KDLIGVESSIRQIESLLST----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGG 264 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 264 (1187)
++++|.+..++++.++... +..-.+-|.|+|++|.||||||++++.+....| +.+ +..+......+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~i-s~~~~~~~~~g 91 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHI-SGSDFVELFVG 91 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEE-EGGGTTTCCTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeC-CHHHHHHHHhc
Confidence 4688888877777665421 111123488999999999999999998764333 122 22222111011
Q ss_pred hH-HHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC--CC
Q 001020 265 LS-QLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF--TS 325 (1187)
Q Consensus 265 l~-~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~--~~ 325 (1187)
.. .-.+.++.. .....+.+|+||+++.. ..+..+...+..+ ..
T Consensus 92 ~~~~~~r~lf~~------------------A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 92 VGAARVRDLFAQ------------------AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp HHHHHHHHHHHH------------------HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ccHHHHHHHHHH------------------HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 10 001111111 12345789999998542 1233444322211 23
Q ss_pred CcEEEEEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccCc
Q 001020 326 GSRIIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGVP 392 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~GlP 392 (1187)
+..||.||.....+.. ...+..+.++..+.++-.+++..++-........+ ...+++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 5567777766543321 13455889999998888888877764332221122 233566667765
No 228
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0016 Score=75.03 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=91.3
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
+++.|.+...++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+......
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcccc
Confidence 5678999988888775532 223356788999999999999999999875443 2223322221111
Q ss_pred C-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC--C
Q 001020 264 G-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF--T 324 (1187)
Q Consensus 264 ~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~--~ 324 (1187)
+ .....+.++... -...+.++++|+++.. ..+..++..++.+ .
T Consensus 248 Ge~e~~ir~lF~~A------------------~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 248 GEGPRMVRDVFRLA------------------RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp SHHHHHHHHHHHHH------------------HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred chhHHHHHHHHHHH------------------HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 1 112222222221 1235688888987321 1133333322211 2
Q ss_pred CCcEEEEEeCChhhh-----hhcCcceeEEecCC-CHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 325 SGSRIIITTRDKQVL-----KNCRVDGIYEVEAL-LDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~-----~~~~~~~~~~l~~L-~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.+..||.||...+.+ .....+..++++.+ +.++-.++|..+.-+.......++ ..+++.+.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 344566677554322 12234567888755 555556677666544332212333 3445555554
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.24 E-value=0.00086 Score=74.84 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=36.9
Q ss_pred CccchHHHHHHHHHhhcc------------CCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 196 DLIGVESSIRQIESLLST------------GSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.++|.+..++.+...+.. .......+.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999888888776643 011234678999999999999999998774
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.23 E-value=0.00071 Score=75.64 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=37.9
Q ss_pred CccchHHHHHHHHHhhccC------C-CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 196 DLIGVESSIRQIESLLSTG------S-KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.++|.+..++.+...+... . .....+.++|++|+||||+|+.++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 5788888888887766532 1 11357899999999999999999987644
No 231
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.00023 Score=72.60 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhccCC-CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 200 VESSIRQIESLLSTGS-KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 200 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
....++.+.+++..-. ...+.++|+|++|.||||||++++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444444443211 2246899999999999999999999775
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.12 E-value=0.0011 Score=73.70 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+.++|....++++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358899999988887765422222357799999999999999999854
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.09 E-value=0.0041 Score=78.61 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=80.6
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC------CceEEEEechhhhcc--cCC
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF------EGSYFLQNVREESER--TGG 264 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~--~~~ 264 (1187)
..+.+||++.+++++...|.... ..-+.++|++|+|||++|+.+++.+.... ...++..+....... ...
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~ 255 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDR 255 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTT
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHH
Confidence 44679999999999999986533 23477999999999999999999863321 122221111000000 001
Q ss_pred hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhhh----
Q 001020 265 LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVLK---- 340 (1187)
Q Consensus 265 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~---- 340 (1187)
+..+. . .....++.+|++| ...+....+...+. ....++|.||.......
T Consensus 256 l~~~~----~------------------~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 256 LKKVM----D------------------EIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp HHHHH----H------------------HHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred HHHHH----H------------------HHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 11111 1 1122467788999 22233333444433 23456666665543110
Q ss_pred --hc-CcceeEEecCCCHHHHHHHHHHhh
Q 001020 341 --NC-RVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 341 --~~-~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
.. ..-..+.++.++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 112469999999999999998654
No 234
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.03 E-value=0.00047 Score=74.48 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=35.7
Q ss_pred CCCccEEeccCCCCCCcc---cccCCCCCCcEEECccCCCccccccccCCC--CCCEEeecCCCCCCcCC
Q 001020 847 LRILTNLNLSDCGITELP---NSLGQLSSLHILFRDRNNFERIPTSIIHLT--NLFLLKLSYCERLQSLP 911 (1187)
Q Consensus 847 l~~L~~L~Ls~~~l~~l~---~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~--~L~~L~L~~c~~L~~lp 911 (1187)
+++|+.|+|++|+++.++ ..+..+++|+.|+|++|.|+.+. .+..+. +|+.|+|++|+--..+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 445556666666655432 34445667777777776666552 222222 67777777766444443
No 235
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.99 E-value=0.00038 Score=75.20 Aligned_cols=14 Identities=29% Similarity=0.090 Sum_probs=7.0
Q ss_pred cccEEEccCccCCc
Q 001020 684 KLAILSLRHCKCIK 697 (1187)
Q Consensus 684 ~L~~L~L~~c~~l~ 697 (1187)
+|+.|+|++|....
T Consensus 221 ~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 221 KLEELWLDGNSLCD 234 (267)
T ss_dssp CCSEEECTTSTTGG
T ss_pred CcceEEccCCcCcc
Confidence 55555555555333
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.95 E-value=0.0036 Score=69.12 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=24.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..+.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34678899999999999999999988543
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.005 Score=66.45 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCccchHHHHHHHHHhhcc--C--------CCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 195 KDLIGVESSIRQIESLLST--G--------SKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++++|.+....++.++... . -.-.+-+.|+|++|.||||||++++....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577777666555543321 0 00012389999999999999999998764
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.88 E-value=0.0021 Score=79.80 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=94.7
Q ss_pred CCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 195 KDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++..... ++..+..+......
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4578888888888776431 11235678999999999999999999876433 33333333222211
Q ss_pred C-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh-------------HHHHHHhccCCCCC--CCc
Q 001020 264 G-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS-------------EQIKFLIGSLDWFT--SGS 327 (1187)
Q Consensus 264 ~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~-------------~~l~~l~~~~~~~~--~gs 327 (1187)
+ -....+.++.. .....+.+|++|+++.. ..+..|+..+.... .+.
T Consensus 280 gese~~lr~lF~~------------------A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 280 GESESNLRKAFEE------------------AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp THHHHHHHHHHHH------------------HTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred hHHHHHHHHHHHH------------------HHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1 11222222222 12345788999988532 11233332222111 233
Q ss_pred EEEEEeCChhhhh-h----cCcceeEEecCCCHHHHHHHHHHhhhCCCCCCCchHHHHHHHHHHHhccC
Q 001020 328 RIIITTRDKQVLK-N----CRVDGIYEVEALLDYYALQLFSRHAFGQNQNADPSYKELSDRIIKFAQGV 391 (1187)
Q Consensus 328 rIIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~l~~~i~~~~~Gl 391 (1187)
.||-||...+.+. . ...+..++++..+.++-.+++..+.-+.......++ ..+++.+.|.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gf 406 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCC
Confidence 4455655432221 1 135678999999999999999877643322212222 3455556555
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.86 E-value=0.0011 Score=65.16 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
-..++|+|..|.|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999999987654
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.0071 Score=66.21 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=77.9
Q ss_pred CCCccchHHHHHHHHHhhcc--C--------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccC
Q 001020 194 NKDLIGVESSIRQIESLLST--G--------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTG 263 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 263 (1187)
.++++|.+...+++.++... . -.-.+-+.|+|++|.||||||++++..... ..+.+. .........
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~ 114 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV 114 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHHh
Confidence 35678877776666554321 0 001123899999999999999999987642 223332 111111100
Q ss_pred ChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCCC--C
Q 001020 264 GLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWFT--S 325 (1187)
Q Consensus 264 ~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~~--~ 325 (1187)
+ ...+.+..- .. ........++|+|+++.. ..+..+...+.... .
T Consensus 115 ~--~~~~~i~~~--------------~~-~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 115 G--VGAARVRDL--------------FE-TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp T--HHHHHHHHH--------------HH-HHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred h--HHHHHHHHH--------------HH-HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 0 001111000 00 001123568899998421 11233333332211 1
Q ss_pred CcEEEEEeCChhhhh-----hcCcceeEEecCCCHHHHHHHHHHhh
Q 001020 326 GSRIIITTRDKQVLK-----NCRVDGIYEVEALLDYYALQLFSRHA 366 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 366 (1187)
...++.||...+++. ....+..++++..+.++-.+++..++
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 223444665544332 12355688999999988888887665
No 241
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.81 E-value=0.0084 Score=70.76 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=83.0
Q ss_pred CCCCccchHHHHHHHHHhhcc--CC--------CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 193 DNKDLIGVESSIRQIESLLST--GS--------KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
..++++|.+..++++.++... .. .-.+-|.|+|++|.||||||++++...... .+.+ +........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i-~g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITA-SGSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEE-EGGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEE-ehhHHHHhh
Confidence 346788988877777665421 10 112238999999999999999999876422 2223 222211110
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCC--C
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWF--T 324 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~--~ 324 (1187)
.+ .....+.. + +.. .....+.++++|+++.. ..+..+...+..+ .
T Consensus 105 ~g--~~~~~v~~-l--fq~------------a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 105 VG--VGAARVRD-L--FET------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TT--HHHHHHHH-H--TTT------------SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hh--hHHHHHHH-H--HHH------------HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 11 11111110 0 000 00123468899988421 1233444333322 2
Q ss_pred CCcEEEEEeCChhhhhh-----cCcceeEEecCCCHHHHHHHHHHhhh
Q 001020 325 SGSRIIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQLFSRHAF 367 (1187)
Q Consensus 325 ~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af 367 (1187)
.+..|+.||....++.. ...+..+.++..+.++-.+++..++-
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 23455556666544321 13456889999999998998887753
No 242
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.72 E-value=0.0023 Score=58.50 Aligned_cols=66 Identities=8% Similarity=0.006 Sum_probs=50.2
Q ss_pred CcccEEEcccccccccchHHHHHHHHhhCCCcEEEeCCCCCCCcchHHHHHhhccccEEEEEecCCcccchhHHHHHHHH
Q 001020 18 AKYDVFLSFRGEDTRDNFTSHLYAALCRKNIETFIDNQLIRGDEISPALLDAIGGSKISVIIFSEGYASSRWCLEEIVKI 97 (1187)
Q Consensus 18 ~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~ 97 (1187)
.+|.+||||+.+|.++.|+ ..|.+.|+.. .| +.|+.|...||+.++..+.|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~~~~L~----~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFL----ERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHHHHHHH----HHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhHHHHHH----HHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4699999999999333344 4444556643 23 789999999999999999999999999877
Q ss_pred HHhcc
Q 001020 98 LECKN 102 (1187)
Q Consensus 98 ~~~~~ 102 (1187)
.+..+
T Consensus 64 ~~~gk 68 (111)
T 1eiw_A 64 RKSSK 68 (111)
T ss_dssp TTTTC
T ss_pred HHcCC
Confidence 65444
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.71 E-value=0.0033 Score=79.43 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=80.9
Q ss_pred CCccchHHHHHHHHHhhccCC-------CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHH
Q 001020 195 KDLIGVESSIRQIESLLSTGS-------KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQ 267 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 267 (1187)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+.... ....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~-~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEK-HSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSS-CCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccc-cccc-
Confidence 458999998888887664311 1123689999999999999999998764332333333 33332222 1000
Q ss_pred HHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCChH--HHHHHhccCCC-----------CCCCcEEEEEeC
Q 001020 268 LRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCSE--QIKFLIGSLDW-----------FTSGSRIIITTR 334 (1187)
Q Consensus 268 l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~~--~l~~l~~~~~~-----------~~~gsrIIiTTR 334 (1187)
...+ ....-....-+|+||+++... ....|...+.. .....+||+||.
T Consensus 568 -~~~l------------------~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 -GGQL------------------TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----C------------------HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -cchh------------------hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0000 000001123388999996532 23333322211 123568888887
Q ss_pred Ch-----hh----hhh------cCcceeEEecCCCHHHHHHHHHHh
Q 001020 335 DK-----QV----LKN------CRVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 335 ~~-----~v----~~~------~~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
.. .+ ... ...+.++.+.+++.++..+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 31 00 000 133458889999988877776654
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.66 E-value=0.01 Score=71.39 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHhhcc----CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 197 LIGVESSIRQIESLLST----GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.+|.+...+.+.+.+.. .......+.++|++|+||||||+.++......|
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 68888777776554321 111345899999999999999999998775443
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.61 E-value=0.02 Score=62.43 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=66.4
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCceE
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKI 300 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~ 300 (1187)
++++|++|.||||||++++...... .+.+. ..+.... ......+.+..-. . ......+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~--~~~~~~~~i~~vf--------------~-~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM--YVGESERAVRQVF--------------Q-RAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS--TTHHHHHHHHHHH--------------H-HHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh--hhhHHHHHHHHHH--------------H-HHHhcCCC
Confidence 9999999999999999999875432 23332 1111111 1111111111000 0 00012356
Q ss_pred EEEEcCCCCh-------------HHHHHHhccCCCC--CCCcEEEEEeCChhhhhh-----cCcceeEEecCCCHHHHHH
Q 001020 301 IIVFDDVTCS-------------EQIKFLIGSLDWF--TSGSRIIITTRDKQVLKN-----CRVDGIYEVEALLDYYALQ 360 (1187)
Q Consensus 301 LlVLDDv~~~-------------~~l~~l~~~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~ 360 (1187)
++++|+++.. .....+...+... ....-++.+|...+++.. ...+..+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 7777877542 1122222222211 123345566766554432 1456788999999999999
Q ss_pred HHHHhh
Q 001020 361 LFSRHA 366 (1187)
Q Consensus 361 Lf~~~a 366 (1187)
++..+.
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.50 E-value=0.0059 Score=77.12 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCCccchHHHHHHHHHhhcc-----------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc
Q 001020 194 NKDLIGVESSIRQIESLLST-----------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT 262 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 262 (1187)
.++++|.+..+++|.+++.. +-.....|.|+|++|.||||||++++......| +.+ +..+.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhhh
Confidence 35689999999998887643 122345789999999999999999998764433 222 222211110
Q ss_pred CC-hHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCCCC
Q 001020 263 GG-LSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWFTS 325 (1187)
Q Consensus 263 ~~-l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~~~ 325 (1187)
.+ .......++.. .......++++|+++.. .++-.+..... ...
T Consensus 279 ~g~~~~~l~~vf~~------------------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 279 AGESESNLRKAFEE------------------AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp TTHHHHHHHHHHHH------------------HHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred hhhHHHHHHHHHHH------------------HHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 11 01111111111 11234578999998321 11222222221 123
Q ss_pred CcEEEEEeCChhhhh-hc----CcceeEEecCCCHHHHHHHHHHhhh
Q 001020 326 GSRIIITTRDKQVLK-NC----RVDGIYEVEALLDYYALQLFSRHAF 367 (1187)
Q Consensus 326 gsrIIiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~af 367 (1187)
+..+|.||....-+. .. ..+..+.+...+.++-.+++..++-
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 445666665532221 11 2345678888888888888887653
No 247
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.76 E-value=0.011 Score=61.13 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=38.8
Q ss_pred CCCccchH----HHHHHHHHhhccCCCC--eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 194 NKDLIGVE----SSIRQIESLLSTGSKD--VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 194 ~~~~vGr~----~~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.++|++.. ..++.+..++...... .+.+.|+|++|+||||||+++++....+...++|+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34566543 2334455555433221 26788999999999999999999876655455555
No 248
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.61 E-value=0.019 Score=67.59 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHhh---ccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 194 NKDLIGVESSIRQIESLL---STGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 194 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.+.++|.+..++.+..++ ..+....+-+.++|++|+|||++|+++++.....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 367999999888765544 2332223568899999999999999999987543
No 249
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.55 E-value=0.036 Score=61.62 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=60.8
Q ss_pred ccchhhHHHHHHHH-hcCChHHHHHHHHHHHhcccccCccccccchhhHHHHHHHHHHHHhhcccccCCCCCccchHHHH
Q 001020 126 TGIFGDGFLKLEER-FMEWPEKLESWRIALREAANLSGFASHAIRPESLLIEKIVGEILKRLNDMYRTDNKDLIGVESSI 204 (1187)
Q Consensus 126 ~g~~~~~~~~~~~~-~~~~~~~v~~wr~aL~~~a~~~g~~~~~~~~e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~ 204 (1187)
+.++...+.+.... -..+.+.++..+.+|-++- -..+.++++++.+.++........ . =++.-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~d-----------v~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 79 (320)
T 1zu4_A 15 AFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTD-----------MGMKMVLKVSNLVRKKTKRDTSFE---N-IKDALV 79 (320)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHCCTTCCHH---H-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhhchhHH---H-HHHHHH
Confidence 34555555555443 1223455566666665421 123456666666665543221100 0 112222
Q ss_pred HHHHHhhccC------------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 205 RQIESLLSTG------------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 205 ~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
++|.++|... ....++|+|+|.+|+||||++..++..+... ...+.+
T Consensus 80 ~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVll 138 (320)
T 1zu4_A 80 ESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLI 138 (320)
T ss_dssp HHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred HHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEE
Confidence 4455555322 1346799999999999999999999876544 334444
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.50 E-value=0.016 Score=73.30 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=37.3
Q ss_pred CCccchHHHHHHHHHhhccC------C-CCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 195 KDLIGVESSIRQIESLLSTG------S-KDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..++|.+..++.+...+... . .....+.++|++|+|||++|+++++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45889999888887766421 1 123478899999999999999999877
No 251
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.47 E-value=0.0044 Score=63.24 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=5.2
Q ss_pred CCCCCEEeccC
Q 001020 773 LKSLQHLNLFG 783 (1187)
Q Consensus 773 l~~L~~L~L~~ 783 (1187)
-+.|++|+|++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34455555544
No 252
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.24 E-value=0.0034 Score=61.05 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=33.1
Q ss_pred CccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 196 DLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57899888888887764311112347799999999999999988654
No 253
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.07 E-value=0.028 Score=53.46 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=42.9
Q ss_pred cEEeccCCCCC--CcccccCCCCCCcEEECccCCCccccc-cccCCCCCCEEeecCCC
Q 001020 851 TNLNLSDCGIT--ELPNSLGQLSSLHILFRDRNNFERIPT-SIIHLTNLFLLKLSYCE 905 (1187)
Q Consensus 851 ~~L~Ls~~~l~--~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~L~~c~ 905 (1187)
..++.++++++ .+|..+ .++|+.|+|++|+|+.||. .+..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36778888888 788643 4579999999999999987 46888999999999875
No 254
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.05 E-value=0.016 Score=65.18 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.9
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+.++|++..++.+...+..+ .-+.++|++|+|||+||+++++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 57899999999888777643 258899999999999999999876543
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.87 E-value=0.085 Score=58.11 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhccC------CCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 201 ESSIRQIESLLSTG------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 201 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..-.++|.+.|... .....+++|+|.+|.||||++..++..+...
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34445566666432 1345799999999999999999999877544
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.85 E-value=0.023 Score=72.58 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=37.6
Q ss_pred CccchHHHHHHHHHhhccC------C-CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 196 DLIGVESSIRQIESLLSTG------S-KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.++|.+..++.+...+... + .....+.|+|++|+|||++|+++++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999888887766431 1 12357889999999999999999987643
No 257
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.82 E-value=0.088 Score=51.55 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=76.1
Q ss_pred ccEEEcc--------------cccccccchHHHHHHHHhhCCCcEEEeC-CCC----C----CCcchHHHHHhhccccEE
Q 001020 20 YDVFLSF--------------RGEDTRDNFTSHLYAALCRKNIETFIDN-QLI----R----GDEISPALLDAIGGSKIS 76 (1187)
Q Consensus 20 ~dvFis~--------------~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~----~----g~~~~~~~~~~i~~s~~~ 76 (1187)
--+||.| +.+| .....-|.+.-....+..|.|. +.. - -+.|-+.|.+.|..|+..
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~v 83 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNI 83 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEE
T ss_pred cCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcE
Confidence 3478888 4566 3456777777777677778886 542 2 245888999999999999
Q ss_pred EEEecCCcccchhHHHHHHHHH-HhccccCCCceEEeEEEEec-cccccccccchhhHHH
Q 001020 77 VIIFSEGYASSRWCLEEIVKIL-ECKNDKNIGQIVVPVFYRVD-PSDVRNQTGIFGDGFL 134 (1187)
Q Consensus 77 i~v~S~~y~~s~~c~~el~~~~-~~~~~~~~~~~v~pvfy~vd-p~~vr~q~g~~~~~~~ 134 (1187)
|+++|++...|.|-..|+..++ ++.. .|+-|.-+-+ .++++...|+|.....
T Consensus 84 IllIs~~T~~s~~v~wEIe~Ai~~~~~------PII~Vy~~~~~~~~i~~~~g~~~~~~~ 137 (189)
T 3hyn_A 84 ILFLSSITANSRALREEMNYGIGTKGL------PVIVIYPDYDKKSDIVDSNGNFKKQIK 137 (189)
T ss_dssp EEECCTTCCCCHHHHHHHHHHTTTTCC------CEEEEETTCCSGGGTBCTTSCBCHHHH
T ss_pred EEEEecCccccchhHHHHHHHHHhcCC------cEEEEECCccccchhhhccccchhhHh
Confidence 9999999999999999999998 5444 5666642222 3355555566544433
No 258
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.63 E-value=0.039 Score=68.61 Aligned_cols=151 Identities=19% Similarity=0.252 Sum_probs=77.6
Q ss_pred CCccchHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhccc-
Q 001020 195 KDLIGVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERT- 262 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~- 262 (1187)
..+.|.+...++|.+.+... ....+-|.++|++|.|||.+|+++++.....| +.....+.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~~l~s~~v 552 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGPELLTMWF 552 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccchhhcccc
Confidence 45678888888888765321 12234578999999999999999998765433 211111111110
Q ss_pred CChHHHHHHHhhccccCCCCCCccccchhhcccCCceEEEEEcCCCCh----------------HHHHHHhccCCCCCCC
Q 001020 263 GGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRKKIIIVFDDVTCS----------------EQIKFLIGSLDWFTSG 326 (1187)
Q Consensus 263 ~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVLDDv~~~----------------~~l~~l~~~~~~~~~g 326 (1187)
..-++..++++.. .-+..+.+|++|+++.. ..+..|+..++.....
T Consensus 553 Gese~~vr~lF~~------------------Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 553 GESEANVREIFDK------------------ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp SSCHHHHHHHHHH------------------HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred chHHHHHHHHHHH------------------HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 0111222222221 11345788889988531 1133444433322222
Q ss_pred c-EEEE-EeCChhh-----hhhcCcceeEEecCCCHHHHHHHHHHhhh
Q 001020 327 S-RIII-TTRDKQV-----LKNCRVDGIYEVEALLDYYALQLFSRHAF 367 (1187)
Q Consensus 327 s-rIIi-TTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 367 (1187)
. .+|| ||-..+. +..-..+..+.++..+.++-.++|..+.-
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 2 2333 4433222 21124567888988888888888876653
No 259
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.62 E-value=0.027 Score=61.80 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
+++.|+|++|+||||||.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56789999999999999999876
No 260
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.61 E-value=0.29 Score=55.02 Aligned_cols=154 Identities=8% Similarity=-0.040 Sum_probs=97.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh-ccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS-NQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLS 296 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~ 296 (1187)
.++..++|..|.||++.|+++...+. ..|+....+ .+.. . ..+.++.+.+... -+.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~-~~~~~l~~~~~~~------------------plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SIDP---N-TDWNAIFSLCQAM------------------SLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-ECCT---T-CCHHHHHHHHHHH------------------HHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-EecC---C-CCHHHHHHHhcCc------------------CCc
Confidence 45888999999999999999988654 345432112 1211 1 4555555443221 133
Q ss_pred CceEEEEEcCCCC---hHHHHHHhccCCCCCCCcEEEEEeCC-------hhhhhh-cCcceeEEecCCCHHHHHHHHHHh
Q 001020 297 RKKIIIVFDDVTC---SEQIKFLIGSLDWFTSGSRIIITTRD-------KQVLKN-CRVDGIYEVEALLDYYALQLFSRH 365 (1187)
Q Consensus 297 ~kr~LlVLDDv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 365 (1187)
+++-++|+|+++. .+..+.|...+....+++.+|++|.. ..+... ......++..+++.++..+.+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4566788899865 34566666655545577888777643 233333 233468999999999998888776
Q ss_pred hhCCCCCCCchHHHHHHHHHHHhccCchhhHH
Q 001020 366 AFGQNQNADPSYKELSDRIIKFAQGVPLALKV 397 (1187)
Q Consensus 366 af~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 397 (1187)
+-..... -..+.+..+++.++|...++..
T Consensus 155 ~~~~g~~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLE---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCE---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCC---CCHHHHHHHHHHhchHHHHHHH
Confidence 6433321 1235677888889998876655
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.45 E-value=0.096 Score=57.51 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..+++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999876544
No 262
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.40 E-value=0.013 Score=59.76 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=23.3
Q ss_pred hhccCCCcEEeccCCCCCc-----ccccccCCCCCCCEEeccCCC
Q 001020 746 IECLSRLITLNLENCSRLE-----CLSSSLCKLKSLQHLNLFGCT 785 (1187)
Q Consensus 746 i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~L~~~~ 785 (1187)
+.+-+.|+.|+|++|+.+. .+...+..-+.|+.|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 3455678888887753332 234445555666666666654
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.29 E-value=0.018 Score=57.98 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=22.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|.|.|++|.||||+|+++.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 264
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.21 E-value=0.031 Score=63.66 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHhhc-------------cCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 197 LIGVESSIRQIESLLS-------------TGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 197 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6777777777776662 1111235688999999999999999998774
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.12 E-value=0.047 Score=56.63 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
....+|+|.|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988664
No 266
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.12 E-value=0.22 Score=55.36 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=26.9
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
...+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l 162 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVI 162 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEE
Confidence 45799999999999999999999865443 333444
No 267
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.00 E-value=0.13 Score=59.77 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=28.1
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
...+++|+|..|.|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35699999999999999999999866533 4555553
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.97 E-value=0.026 Score=56.44 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|.|+.|.||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.97 E-value=0.056 Score=55.76 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcc-CCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 200 VESSIRQIESLLST-GSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 200 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
|++.++++.+.+.. ......+|+|.|..|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455555554432 223457999999999999999999988653
No 270
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.90 E-value=0.029 Score=62.76 Aligned_cols=52 Identities=19% Similarity=0.079 Sum_probs=33.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCC-ceEEEEechh
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFE-GSYFLQNVRE 257 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~ 257 (1187)
++.|.-.+..+. -..++|+|.+|.|||||++.+++.+..+.. ..+.+..+.+
T Consensus 162 iraID~~~pi~r--GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 162 ARVLDLASPIGR--GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp HHHHHHHSCCBT--TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred ceeeeeeeeecC--CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 344444443333 248999999999999999999887654433 2233334543
No 271
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.89 E-value=0.04 Score=61.38 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHhhc--cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 198 IGVESSIRQIESLLS--TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
|+.+.-++++.+.+. ...+....|.|+|++|.||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 344444455544442 1234566799999999999999999998765544
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.87 E-value=0.035 Score=56.34 Aligned_cols=25 Identities=24% Similarity=-0.081 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+++.|+|+.|.||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999977776653
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.69 E-value=0.031 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|+|++|.||||+|+.++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998773
No 274
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.67 E-value=0.31 Score=56.17 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=25.2
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
...+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876654
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.66 E-value=0.031 Score=56.70 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+.|.|+|++|.||||+|+.++.++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998763
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.54 E-value=0.073 Score=58.23 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=25.3
Q ss_pred CCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 215 SKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 215 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.....+|+|.|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999999886643
No 277
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.49 E-value=0.58 Score=54.10 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhccccc----CCCCCccchHHHHHHHHHhhccC-------CCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 173 LLIEKIVGEILKRLNDMYR----TDNKDLIGVESSIRQIESLLSTG-------SKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 173 ~~i~~i~~~i~~~l~~~~~----~~~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
+.++++++.+.++...... .....+ +..-.+++.++|... ....++|.++|.+|+||||+|..++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 46 PVVREFINRVKEKAVGHEVNKSLTPGQEF--VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHHHHHHSSSCCCSSSCTTTTT--HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCChHHHH--HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666666655432211 011111 223345566666432 134689999999999999999999987
Q ss_pred hhcc
Q 001020 242 ISNQ 245 (1187)
Q Consensus 242 ~~~~ 245 (1187)
++.+
T Consensus 124 l~~~ 127 (433)
T 2xxa_A 124 LREK 127 (433)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7654
No 278
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.32 E-value=0.11 Score=49.37 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred EEEecCCCCC--CCCCcccccccceEeCcCCCccccccc-ccccCCccEEEcCCCCC
Q 001020 595 YFHWNGYPLK--AMPSYIHQENLIALEMPHSSVEKLWGG-AQQLVNLKYMDLSHSKQ 648 (1187)
Q Consensus 595 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~ 648 (1187)
.++.++..++ .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4556666666 676543 34577777777777777654 36667777777776643
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.29 E-value=0.036 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|+|.|++|.||||+|+.+ .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 443
No 280
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.26 E-value=0.068 Score=63.10 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+.+||.+..++.+...+..+. -|.++|++|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHH
Confidence 468999999998887775443 68899999999999999999865
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.25 E-value=0.31 Score=56.14 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|.++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999876554
No 282
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.25 E-value=0.19 Score=55.29 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=27.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 4699999999999999999999866543 4455553
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.22 E-value=0.14 Score=56.95 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=39.6
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhh
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFS 274 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 274 (1187)
+..|..++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+..- ....++.+.+..
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-------~s~~~l~~R~~~ 117 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-------MGKKENIKRLIV 117 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-------SCHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-------CCHHHHHHHHHH
Confidence 34455555 2222335899999999999999999987665443566666321 334455555543
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.10 E-value=0.076 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.+|.|.|++|.||||+|+.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 285
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.10 E-value=0.22 Score=54.73 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=27.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 34699999999999999999999866533 3445543
No 286
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.07 E-value=0.045 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 287
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.96 E-value=0.17 Score=51.23 Aligned_cols=115 Identities=19% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCcccc----------
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGL---------- 288 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~---------- 288 (1187)
..|-|++-.|-||||.|-.++-+...+=-.+.++.-+... .. .+-..+.+.+.-+....+... .+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf-~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGF-TWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTC-CCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEccccc-ccCCCCcHHHHHHH
Confidence 4566777777999999999988765554344454322211 11 233344444421111111110 0000
Q ss_pred ----chhhcccC-CceEEEEEcCCCCh-----HHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 289 ----NFRGKRLS-RKKIIIVFDDVTCS-----EQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 289 ----~~~~~~l~-~kr~LlVLDDv~~~-----~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
......+. ++-=|||||++... -..+.+...+........||||+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 00011333 44569999998322 11222222222234677899999995
No 288
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.95 E-value=0.1 Score=57.73 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHHHHHHhhccCCC-CeEEEEEEecCcchHHHHHHHHHHHhh-ccCCceEEE
Q 001020 203 SIRQIESLLSTGSK-DVYTLGIWGIGGIGKTTLAGAIFNRIS-NQFEGSYFL 252 (1187)
Q Consensus 203 ~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~ 252 (1187)
.++.+.+++..... ..+.+.|+|++|+|||+||+++++... ..-..+.|+
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34445555543221 245788999999999999999999776 443344444
No 289
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.92 E-value=0.17 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.++++|+|.+|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998765
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.88 E-value=0.052 Score=54.61 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 291
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.86 E-value=0.034 Score=56.39 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=24.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFE 247 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 247 (1187)
|.|.|+|+.|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 46889999999999999999877655443
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.83 E-value=0.34 Score=54.45 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=28.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
...+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 34699999999999999999999876543 3455553
No 293
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.79 E-value=0.052 Score=55.29 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
-.+++|+|+.|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999864
No 294
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.78 E-value=0.067 Score=61.22 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+.++|++|+|||++|+++++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998774
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.75 E-value=0.04 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|.|+.|.||||+|+.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998754
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.72 E-value=0.088 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|+.|.||||+|+.++..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998775
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.69 E-value=0.042 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+.|.|.|++|.||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.69 E-value=0.064 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|.|.|++|.||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.68 E-value=0.12 Score=59.76 Aligned_cols=37 Identities=35% Similarity=0.671 Sum_probs=27.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccCCc-eEEEEechh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQFEG-SYFLQNVRE 257 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~~~~~~ 257 (1187)
.++|+|.+|+||||||..+......++.. +++. .+.+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~-~iGe 190 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA-GVGE 190 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE-EESS
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe-eecc
Confidence 58899999999999999999876655443 3443 4443
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.64 E-value=0.083 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.014 Sum_probs=23.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
....|+|.|++|.||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.58 E-value=0.061 Score=57.71 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++|.|.|++|.||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998763
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.45 E-value=0.058 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=22.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|+|.|+.|.||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.43 E-value=0.054 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987654
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.43 E-value=0.058 Score=54.11 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 305
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.40 E-value=0.11 Score=52.92 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 199 GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 199 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
....-+..+..++..- +..+.+.|+|++|.||||+|.++++.+..
T Consensus 40 ~~~~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 40 EFITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CHHHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444466666666532 23346899999999999999999987643
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.36 E-value=0.11 Score=52.76 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
..+|.|.|++|.||||+|+.++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987654
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.34 E-value=0.067 Score=54.38 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.+|.|.|++|.||||+|+.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987753
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.25 E-value=0.053 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|+|.|++|.||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 309
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.24 E-value=0.065 Score=60.55 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 193 DNKDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 193 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+.++|.+..++.+...+.... ..-|.|+|.+|+|||++|+++++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886655443332211 12388999999999999999998654
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.22 E-value=0.06 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|+|.|+.|.||||+|+.++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 311
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.16 E-value=0.079 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
-.+|+|+|+.|.||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998765
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.06 E-value=0.11 Score=51.48 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++++|.|..|.|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999877654
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.93 E-value=0.075 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|+|.|+.|.||||||+.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.93 E-value=0.073 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|+|.|++|.||||+|+.++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.90 E-value=0.083 Score=56.65 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.90 E-value=0.087 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|+|.|++|.||||+|+.++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.90 E-value=0.065 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=18.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|.|.|++|.||||+|+.+..++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987654
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.87 E-value=0.21 Score=55.54 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhc
Q 001020 198 IGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSE 275 (1187)
Q Consensus 198 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 275 (1187)
.|...-...|.+++. +-..-.++.|.|.+|+||||+|..++.....+=..++|+. . + ....++...++..
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-E-----ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L-E-----MSAEQLALRALSD 96 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S-S-----SCHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C-C-----CCHHHHHHHHHHH
Confidence 333333445555553 2222348899999999999999999887654323455553 2 1 3445666666543
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.87 E-value=0.13 Score=53.26 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.+|+|.|++|.||||+|+.++.++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999998775443
No 320
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.85 E-value=0.078 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|.|++|.||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998764
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.81 E-value=0.065 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++|+|.|++|.||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998763
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.79 E-value=0.092 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
....+|+|.|+.|.||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 323
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.77 E-value=0.13 Score=56.80 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.8
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
++.++|+|.|-|||||||.|..++.-+...=..+.-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3579999999999999999998887665443334434
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.77 E-value=0.085 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++|.|+.|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
No 325
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.77 E-value=0.089 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..|+|.|++|.||||+|+.+++++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999866
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.74 E-value=0.08 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
...|+|+|+.|.||||+|+.++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999986
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.73 E-value=0.065 Score=54.47 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=24.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFE 247 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 247 (1187)
++++|.|+.|.|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.70 E-value=0.09 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.|+|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.66 E-value=0.2 Score=56.37 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=60.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEE-EEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYF-LQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
.+++|.|+.|.||||+.+.+...+.......++ +.+..+.... .. .....+.. ........ .......+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~-~~-----~~~v~q~~-~~~~~~~~-~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE-SK-----KCLVNQRE-VHRDTLGF-SEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CS-----SSEEEEEE-BTTTBSCH-HHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh-cc-----ccceeeee-eccccCCH-HHHHHHHhhh
Confidence 489999999999999999998866544333332 2221111000 00 00000000 00000000 1122235677
Q ss_pred ceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhhh
Q 001020 298 KKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQVL 339 (1187)
Q Consensus 298 kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 339 (1187)
.+=+|++|.+.+.+.++.+.... ..|..||+||-+...+
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 78889999999888776655432 2466788888876544
No 330
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.66 E-value=0.077 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
-++|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999987643
No 331
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.65 E-value=0.29 Score=53.41 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=26.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhccC--CceEEEE
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQF--EGSYFLQ 253 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 253 (1187)
++-|.|.+|+||||||.+++.....++ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999999887665543 3466764
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.56 E-value=0.1 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|++|.||||+|+.++.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988753
No 333
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.44 E-value=0.14 Score=59.00 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=35.1
Q ss_pred CccchHHHHHHHHHhhcc------------CCCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 196 DLIGVESSIRQIESLLST------------GSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 196 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
+++|.+...+.+...+.. .....+-|.++|++|+||||+|++++......|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 467777766666554411 011234688999999999999999998775433
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.43 E-value=0.1 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|++|.||||+|+.+..++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999998763
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.38 E-value=0.14 Score=53.14 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=24.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.+|+|.|+.|.||||+|+.+..++...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887544
No 336
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.33 E-value=0.27 Score=55.53 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=29.6
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.++...+........+|+|+|.+|+|||||+..+...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33444443333457899999999999999999998766443
No 337
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.32 E-value=0.072 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.++|+|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35899999999999999999988763
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.30 E-value=0.097 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 001020 220 TLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
+|+|.|+.|.||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 339
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.25 E-value=0.12 Score=53.70 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+.++|.|.|++|.||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.16 E-value=0.12 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
....+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999875
No 341
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.16 E-value=0.11 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|+|+|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 342
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.11 E-value=0.31 Score=54.65 Aligned_cols=51 Identities=22% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHHHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 203 SIRQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 203 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
-...|..+|. .+-..-+++.|.|++|+||||||.+++......=..++|+.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3456777775 33233469999999999999999999987654333456763
No 343
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.04 E-value=0.1 Score=53.34 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.4
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.-++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999997654
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.03 E-value=0.11 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|+|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.98 E-value=0.11 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876543
No 346
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.98 E-value=0.1 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..|.|.|++|.||||+|+.++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
No 347
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.96 E-value=0.11 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+++|.|+.|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998754
No 348
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.96 E-value=0.18 Score=55.70 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHh-hccC-CCCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 198 IGVESSIRQIESL-LSTG-SKDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 198 vGr~~~~~~l~~~-L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|-...+..+... +... .....+|||.|..|.||||+|+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555555554443 3332 34567999999999999999999887654
No 349
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.87 E-value=0.12 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|+|+|+.|.|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999776
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.86 E-value=0.12 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|.|.|++|.||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998754
No 351
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.85 E-value=0.12 Score=51.91 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.++|+|+.|.|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.78 E-value=0.13 Score=53.19 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHH
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
...+|+|.|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998864
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.77 E-value=0.24 Score=51.87 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+..+|..+-..-.+++|+|+.|.|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222234699999999999999999998744
No 354
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.75 E-value=0.38 Score=55.51 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=34.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc-CCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ-FEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|.+|+|||+|+..+.+.+... -+.++|+ .+.+.. .....+.+.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER~---rEv~e~~~~~~ 205 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERT---REGNDLYHEMI 205 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCCH---HHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCcc---hHHHHHHHHhh
Confidence 478999999999999999999876433 3445554 454432 22344555553
No 355
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.71 E-value=0.29 Score=57.67 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|+|+|.+|+||||++..++..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999876554
No 356
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.64 E-value=0.12 Score=53.35 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 357
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.60 E-value=0.15 Score=52.70 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|+.|.|||||++.+...+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988654
No 358
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.59 E-value=0.098 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+|+|.|+.|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 359
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.58 E-value=0.12 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|+|.|+.|.||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998765
No 360
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.55 E-value=0.14 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...+|+|.|+.|.||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.40 E-value=0.1 Score=55.59 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3799999999999999999998764
No 362
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.38 E-value=0.21 Score=52.80 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc------cCCceEEEE
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN------QFEGSYFLQ 253 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 253 (1187)
.|..+|..+-..-.+++|+|.+|.||||||+.++..... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 444555322222358999999999999999999875322 124566764
No 363
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.37 E-value=0.11 Score=51.97 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=18.3
Q ss_pred EEEEEEecCcchHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAI 238 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v 238 (1187)
.+++|+|+.|.|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999964
No 364
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.33 E-value=0.072 Score=59.47 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=28.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCC-ceEEEEechh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFE-GSYFLQNVRE 257 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~ 257 (1187)
+.++|+|.+|+|||+|+..+++.+..+.. ..+.+..+.+
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 47899999999999999999987654332 2333345544
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.33 E-value=0.23 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.5
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
...+|.|.|++|.||||+|+.+..++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998753
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.32 E-value=0.14 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.29 E-value=0.24 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...+|.|.|++|.||||+|+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.28 E-value=0.13 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..|+|.|++|.||||+|+.++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999765
No 369
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.28 E-value=0.2 Score=52.62 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=25.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|.|.+|.|||||++.++......=..+.|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4899999999999999999997554332334454
No 370
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.28 E-value=0.22 Score=51.74 Aligned_cols=45 Identities=24% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
.|..++..+-..-.+++|.|.+|+||||||+.++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444432222234899999999999999999987 2 223556664
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.27 E-value=0.26 Score=51.28 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 199 GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 199 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+.+...+++...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444555554432 246799999999999999999998876444
No 372
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.25 E-value=0.2 Score=53.07 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=27.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
.++.|.|.+|+||||||.+++......=..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 48999999999999999988776544334566663
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.20 E-value=0.15 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.|+|.|+.|.||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 374
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.12 E-value=0.49 Score=54.82 Aligned_cols=51 Identities=27% Similarity=0.337 Sum_probs=34.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc-cCCceEEEEechhhhcccCChHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN-QFEGSYFLQNVREESERTGGLSQLRQKLF 273 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 273 (1187)
+.++|.|.+|+|||+|+..+.+.+.. +-+.++|+ .+.+.. .....+.+.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~---rEv~e~~~~~~ 217 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMK 217 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCS---HHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCc---HHHHHHHHhhh
Confidence 46899999999999999999987644 33555665 554432 23445555554
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.12 E-value=0.17 Score=50.79 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35889999999999999999998764
No 376
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.08 E-value=0.41 Score=49.89 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.+.+...+.. .....|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444432 246789999999999999999998765443
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.07 E-value=0.14 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|.|+.|.||||+++.++.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998764
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.91 E-value=0.15 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.86 E-value=0.18 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998764
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.83 E-value=0.15 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..|.|.|++|.||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.80 E-value=0.16 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998763
No 382
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.76 E-value=0.12 Score=52.95 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++++|+|+.|.|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999987653
No 383
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.67 E-value=0.25 Score=60.28 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCccchHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 195 KDLIGVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 46899999888888887654 378999999999999999999865443
No 384
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.66 E-value=0.3 Score=56.88 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=32.2
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
+..|.+++. +-..-.++.|.|.+|+||||+|..++.....+=..++|+
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 334444442 222335899999999999999999998765542345555
No 385
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.54 E-value=0.18 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 386
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.50 E-value=0.41 Score=53.86 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 201 ESSIRQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 201 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
..-...|..+|. .+-..-+++.|.|.+|+||||||.+++......=..++|+.
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 333455666664 22223458999999999999999999886654434567774
No 387
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.49 E-value=0.14 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=22.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..|+|.|+.|.||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999876
No 388
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.40 E-value=1.9 Score=46.75 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=25.3
Q ss_pred chHHHHHhhccccEEEEEecCCcccchhHHHHHHHHH
Q 001020 62 ISPALLDAIGGSKISVIIFSEGYASSRWCLEEIVKIL 98 (1187)
Q Consensus 62 ~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~el~~~~ 98 (1187)
....+.+.++++++.|.|+.-.-..+..+ .++.+.+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 34678899999999999998765555554 2344443
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.33 E-value=0.19 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 390
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.19 E-value=0.28 Score=55.13 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=34.8
Q ss_pred HHHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 204 IRQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 204 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
...|..+|. .+-..-+++.|.|.+|+||||||.+++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445566665 33233458999999999999999999876654434566664
No 391
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.17 E-value=0.2 Score=54.52 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=21.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHH
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
...+|+|.|+.|.||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 392
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.14 E-value=0.18 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+++|+|+.|.|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998755
No 393
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.11 E-value=0.22 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..+|+|.|..|.||||||+.+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.09 E-value=0.2 Score=52.67 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=22.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|+|.|++|.||||+|+.++.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
No 395
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.09 E-value=1 Score=51.77 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=24.9
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++++|+|.+|.||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877654
No 396
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.08 E-value=0.2 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
-.+++|.|+.|.|||||++.++.-+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999865
No 397
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.08 E-value=0.19 Score=55.48 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
....+|+|.|..|.|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3457999999999999999999987654
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.08 E-value=0.21 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.02 E-value=0.2 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..|.|.|++|.||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 400
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.02 E-value=0.17 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=22.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999865
No 401
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.96 E-value=0.14 Score=56.69 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999999765
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.93 E-value=1.2 Score=51.59 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.++|+|+|.+|+||||+|..++...+.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999998866543
No 403
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.92 E-value=0.7 Score=53.90 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=40.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEEechhhhcccCChHHHHHHHhhc
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF-EGSYFLQNVREESERTGGLSQLRQKLFSE 275 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 275 (1187)
...|..++ .+-..-.++.|.|.+|+||||+|..++..+.... ..++|+..- ....++...+...
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-------~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-------MPAAQLTLRMMCS 251 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-------SCHHHHHHHHHHH
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-------CCHHHHHHHHHHH
Confidence 34454555 2222335899999999999999999998765432 345665321 3445666666543
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.87 E-value=0.21 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 405
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.84 E-value=0.3 Score=55.33 Aligned_cols=27 Identities=30% Similarity=0.140 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...++++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344699999999999999999999754
No 406
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.77 E-value=0.28 Score=52.09 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=25.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh-ccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS-NQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~ 252 (1187)
.+++|.|+.|.|||||++.++.... ..-...+++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4899999999999999999885322 223344554
No 407
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.73 E-value=0.71 Score=54.04 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=27.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccC-CceEEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQF-EGSYFLQ 253 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~ 253 (1187)
.++.|.|.+|+||||||..++..+...- ..++|+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4899999999999999999998765432 2455653
No 408
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.68 E-value=0.39 Score=53.56 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=54.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCCc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSRK 298 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~k 298 (1187)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+.... ... ..+.-..+ ............+..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-----~~~----~~i~~~~g-gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-----HHK----NYTQLFFG-GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-----SCS----SEEEEECB-TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-----cch----hEEEEEeC-CChhHHHHHHHHhhhC
Confidence 37999999999999999999875533 3456666543221000 000 00000000 0000011112245667
Q ss_pred eEEEEEcCCCChHHHHHHhccCCCCCCCc-EEEEEeCCh
Q 001020 299 KIIIVFDDVTCSEQIKFLIGSLDWFTSGS-RIIITTRDK 336 (1187)
Q Consensus 299 r~LlVLDDv~~~~~l~~l~~~~~~~~~gs-rIIiTTR~~ 336 (1187)
+=++++|.+...+.++.+... . .|. -+|+||...
T Consensus 241 p~ilildE~~~~e~~~~l~~~-~---~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFYNVL-C---SGHKGTLTTLHAG 275 (330)
T ss_dssp CSEEEECCCCSTHHHHHHHHH-H---TTCCCEEEEEECS
T ss_pred CCEEEEcCCChHHHHHHHHHH-h---cCCCEEEEEEccc
Confidence 778899999886655544432 1 232 366666554
No 409
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.68 E-value=0.21 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999876543
No 410
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.56 E-value=0.16 Score=53.01 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+++|+|+.|.|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998754
No 411
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.55 E-value=0.62 Score=52.58 Aligned_cols=54 Identities=26% Similarity=0.227 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhc-cCCCCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEE
Q 001020 200 VESSIRQIESLLS-TGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQ 253 (1187)
Q Consensus 200 r~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 253 (1187)
...-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 55 i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3334456666665 22223358889999999999999999876654434567774
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.48 E-value=0.23 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+|+|.|+.|.||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 413
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.32 E-value=0.25 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+|.|.|++|.||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999865
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.29 E-value=0.22 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 588999999999999999998765
No 415
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.21 E-value=0.22 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988653
No 416
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.17 E-value=0.33 Score=52.12 Aligned_cols=111 Identities=11% Similarity=0.068 Sum_probs=57.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
-.+++|+|+.|.|||||++.+...+...+.+.+++....-.... .... .+..+. ..+...... .......+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-~~~~----~~v~q~-~~gl~~~~l-~~~la~aL~~ 97 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK----SIVNQR-EVGEDTKSF-ADALRAALRE 97 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSS----SEEEEE-EBTTTBSCH-HHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-CCcc----eeeeHH-HhCCCHHHH-HHHHHHHHhh
Confidence 35899999999999999999988665444555554321100000 0000 000000 000000001 0111123334
Q ss_pred ceEEEEEcCCCChHHHHHHhccCCCCCCCcEEEEEeCChhh
Q 001020 298 KKIIIVFDDVTCSEQIKFLIGSLDWFTSGSRIIITTRDKQV 338 (1187)
Q Consensus 298 kr~LlVLDDv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 338 (1187)
++=++++|...+.+....+.... ..|.-|++||-+...
T Consensus 98 ~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 98 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 56688889997766655444321 246678888877543
No 417
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.15 E-value=0.39 Score=47.97 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.++++|.|..|.|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987643
No 418
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.08 E-value=0.39 Score=51.24 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 204 IRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 204 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
..-+..+|.........|.++|++|.|||++|.++++.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344677776542334579999999999999999999753
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.00 E-value=0.18 Score=55.26 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=20.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..+|+|.|..|.||||+|+.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999988653
No 420
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.91 E-value=0.22 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999988664
No 421
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.89 E-value=0.49 Score=53.10 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
....+|+|+|.+|.|||||+..+......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999876543
No 422
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.86 E-value=0.47 Score=51.06 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=26.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
++|+|.|-||+||||+|..++..+..+=..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998776543334444
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.73 E-value=0.46 Score=50.88 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999998766
No 424
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.69 E-value=0.4 Score=52.59 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=26.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCC-ceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFE-GSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~ 252 (1187)
.+++|.|.+|+|||||++.++..+...-. .+.|+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 48999999999999999999987654422 34454
No 425
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.64 E-value=0.44 Score=52.52 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
...++|+|+|-||+||||+|..++..+...=..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3467899999999999999999998776542234434
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.60 E-value=0.28 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.++|.|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999764
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.52 E-value=0.51 Score=52.05 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
...+|||.|..|.|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446999999999999999999987664
No 428
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.49 E-value=0.18 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=15.9
Q ss_pred EEEEEEecCcchHHHHHHHHH-HHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIF-NRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~-~~~ 242 (1187)
.+++|+|+.|.|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 429
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.28 E-value=0.43 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=21.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47789999999999999998876544
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.19 E-value=0.32 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.1
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...+|+|.|+.|.||||+|+.++.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 431
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.13 E-value=1.6 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
+++.|.|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 588899999999999999998866543
No 432
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.87 E-value=0.75 Score=51.56 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc------cCCceEEEE
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN------QFEGSYFLQ 253 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 253 (1187)
.|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 455555433344569999999999999999999876432 123566764
No 433
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.83 E-value=1.9 Score=44.29 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=52.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEEEechhhhcccCChHHHHHHHhhccccCCCCCCccccchhhcccCC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFLQNVREESERTGGLSQLRQKLFSEDESLSVGIPNVGLNFRGKRLSR 297 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 297 (1187)
-.+..++|..|.||||.|...+.+...+-..++.+..... .+ ++...+...+............ ........+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R-~ge~~i~s~~g~~~~a~~~~~~----~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NR-YSEEDVVSHNGLKVKAVPVSAS----KDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------CCEEECSSG----GGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Cc-chHHHHHhhcCCeeEEeecCCH----HHHHHHHhc
Confidence 4688899999999999999888876554333443321111 11 2222333333222111111111 011112223
Q ss_pred ceEEEEEcCCCC--hHHHHHHhccCCCCCCCcEEEEEeCCh
Q 001020 298 KKIIIVFDDVTC--SEQIKFLIGSLDWFTSGSRIIITTRDK 336 (1187)
Q Consensus 298 kr~LlVLDDv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~ 336 (1187)
+--+|++|.+.- .++++.+.... ..|-.||+|-++.
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSB
T ss_pred CCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccc
Confidence 334999998732 34554443321 2377999999964
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.82 E-value=0.32 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.305 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 435
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.80 E-value=0.27 Score=50.85 Aligned_cols=22 Identities=36% Similarity=0.164 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
+++|+|+.|.|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998864
No 436
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.66 E-value=0.57 Score=51.13 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=23.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
.++|+|.|-||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999877644
No 437
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.52 E-value=0.56 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.+++|+|.+|.||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999875543
No 438
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.52 E-value=0.53 Score=52.35 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=32.4
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhcc------CCceEEEE
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISNQ------FEGSYFLQ 253 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 253 (1187)
..|..+|..+-..-.++.|+|.+|+||||||.+++...... -..++|+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34445553222223589999999999999999998765322 23566664
No 439
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.51 E-value=0.31 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||.+.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998853
No 440
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.51 E-value=0.55 Score=51.39 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=27.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
..++++|+|.+|+||||++..++..+... ...+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l 131 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLL 131 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 34689999999999999999999876543 334444
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.46 E-value=0.3 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998754
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.42 E-value=0.39 Score=50.43 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
-.+|+|.|+.|.||||+++.+...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999998765
No 443
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.35 E-value=0.4 Score=54.32 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998764
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.20 E-value=0.29 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||.+.++--
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 445
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.91 E-value=0.44 Score=53.62 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=27.7
Q ss_pred HHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 206 QIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 206 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.|..+|..+-..-.++.|+|.+|.|||||++.++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554332345799999999999999999998765
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.83 E-value=0.31 Score=51.49 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=24.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||++.++--+. ...+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEE
Confidence 4899999999999999998875332 22344544
No 447
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.76 E-value=0.62 Score=47.89 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=25.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCC
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFE 247 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 247 (1187)
+.|+|-|.-|.||||+++.+++++...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999998876554
No 448
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.69 E-value=0.43 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.091 Sum_probs=23.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
.+|.|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999874
No 449
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.61 E-value=0.45 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.58 E-value=0.43 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
..|+|.|..|.||||+|+.++.++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998764
No 451
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.53 E-value=0.58 Score=55.07 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 199 GVESSIRQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 199 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
.|.+-.+.+.+..........+|.+.|+.|.||||+|++++.++..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3444444455544211123468899999999999999999998863
No 452
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.30 E-value=0.46 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998863
No 453
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.08 E-value=0.35 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++|+|+.|.|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3899999999999999999875
No 454
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.07 E-value=0.35 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.04 E-value=0.41 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.91 E-value=0.78 Score=54.73 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
-.+++|+|+.|.|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 368999999999999999999988754
No 457
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.88 E-value=0.36 Score=51.89 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||++.++.-.. ...+.+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEE
Confidence 4899999999999999999875332 22344444
No 458
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.87 E-value=0.41 Score=51.54 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 459
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.81 E-value=0.46 Score=49.58 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+||.|++|.||||+|+.++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 460
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=84.69 E-value=0.72 Score=54.82 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=24.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
..+|.++|++|.||||+|++++..+...|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46899999999999999999998775444
No 461
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.67 E-value=0.37 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||.+.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998753
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.65 E-value=0.49 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 463
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.61 E-value=0.37 Score=51.88 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=25.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||++.++.-+. ...+.+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEE
Confidence 4899999999999999999885432 23455555
No 464
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.56 E-value=0.43 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999863
No 465
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.52 E-value=0.76 Score=47.84 Aligned_cols=35 Identities=17% Similarity=-0.087 Sum_probs=27.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
-.++.|+|..|.||||+|..++.+...+-..+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 36889999999999999999998876554444444
No 466
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.51 E-value=0.38 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||++.++--
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 48999999999999999998753
No 467
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.48 E-value=0.38 Score=51.53 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=24.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||.+.++.-+. ...+.+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEE
Confidence 4899999999999999999875332 12344444
No 468
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.45 E-value=0.33 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998753
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.44 E-value=0.35 Score=55.89 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.9
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHHh
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
...+|.|+|++|.||||+|++++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988754
No 470
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.42 E-value=0.39 Score=51.15 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=25.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||.+.++.-+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 389999999999999999988655443 66665
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.41 E-value=0.34 Score=61.07 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHhhccC-----------CCCeEEEEEEecCcchHHHHHHHHHHHhhccC
Q 001020 195 KDLIGVESSIRQIESLLSTG-----------SKDVYTLGIWGIGGIGKTTLAGAIFNRISNQF 246 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 246 (1187)
.+++|.+...+++.+.+... -...+.+.++|++|.||||||++++......|
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 56788888888888776421 11234688999999999999999999875544
No 472
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.27 E-value=0.4 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 473
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.25 E-value=1.1 Score=49.88 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHHhh
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFNRIS 243 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 243 (1187)
....+++|+|.+|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3457999999999999999999987554
No 474
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.13 E-value=0.41 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++|.|+.|.|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.12 E-value=0.43 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++|+|+.|.|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 476
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=84.07 E-value=0.87 Score=48.20 Aligned_cols=32 Identities=31% Similarity=0.673 Sum_probs=24.4
Q ss_pred EEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 221 LGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 221 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
|+|.|-||+||||+|..++..+...=..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999998776553334444
No 477
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.05 E-value=0.41 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 478
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.94 E-value=0.76 Score=46.96 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=25.4
Q ss_pred EEEEEE-ecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIW-GIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
++|+|+ +-||+||||+|..++..+..+=..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 578888 5799999999999998776543334444
No 479
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=83.87 E-value=0.52 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHHh
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
-.+++|+|+.|.|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999998755
No 480
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=83.68 E-value=0.5 Score=54.16 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHHHhhc
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFNRISN 244 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 244 (1187)
+.|..++..+.+ +.++|.|.+|+|||+|+.++++....
T Consensus 140 raID~l~pigrG--Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 140 SAIDHLNTLVRG--QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp HHHHTTSCCBTT--CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred eEEecccccccC--CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 344444433322 35789999999999999999887654
No 481
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=83.67 E-value=1 Score=47.48 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred CeEEEEEEe-cCcchHHHHHHHHHHHhhcc
Q 001020 217 DVYTLGIWG-IGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 217 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..++|+|+| -||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 357888886 59999999999999988765
No 482
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.63 E-value=0.47 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHH
Q 001020 217 DVYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 217 ~~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999986
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.62 E-value=0.97 Score=46.75 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhcc
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQ 245 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 245 (1187)
..|.|.|+.|.||||+++.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 588999999999999999999987654
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=83.59 E-value=0.46 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.+|+|.|+.|.||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998765
No 485
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.59 E-value=0.44 Score=51.12 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=24.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||++.++.-+. . .+.+++
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i 78 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKI 78 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEE
Confidence 4899999999999999999986433 1 344544
No 486
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.41 E-value=0.56 Score=45.63 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
No 487
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.38 E-value=0.46 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.+++|+|+.|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999998753
No 488
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.37 E-value=0.45 Score=51.57 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=24.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
.+++|+|+.|.|||||++.++.-+. ...+.+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEE
Confidence 3899999999999999999875432 22344544
No 489
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=83.35 E-value=0.45 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++|+|+.|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 490
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.26 E-value=0.46 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHH
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.+++|+|+.|.|||||++.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999875
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.25 E-value=0.48 Score=47.57 Aligned_cols=21 Identities=43% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 001020 220 TLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 492
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.08 E-value=0.6 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 493
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=83.04 E-value=0.88 Score=45.50 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.0
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHH
Q 001020 216 KDVYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 216 ~~~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
.....|+|+|.+|+|||||...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999988764
No 494
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.97 E-value=0.52 Score=49.93 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=25.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHHh-hccCCceEEE
Q 001020 219 YTLGIWGIGGIGKTTLAGAIFNRI-SNQFEGSYFL 252 (1187)
Q Consensus 219 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~ 252 (1187)
.++.|.|.+|+||||+|.+++... ...-..++|+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 488999999999999999877543 3333445555
No 495
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.87 E-value=0.74 Score=44.99 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
.-.|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998863
No 496
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.82 E-value=1 Score=51.21 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCeEEEEEEe-cCcchHHHHHHHHHHHhhccCCceEEE
Q 001020 215 SKDVYTLGIWG-IGGIGKTTLAGAIFNRISNQFEGSYFL 252 (1187)
Q Consensus 215 ~~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~F~~~~~~ 252 (1187)
....++|+|+| -||+||||+|..++..++..=..+..+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 34578999986 899999999999998776553344444
No 497
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.67 E-value=0.59 Score=53.43 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=25.9
Q ss_pred HHHHHhhccCCCCeEEEEEEecCcchHHHHHHHHHH
Q 001020 205 RQIESLLSTGSKDVYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 205 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
..|..+|..+-..-.++.|+|.+|+|||||+..++-
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 445555543322335899999999999999998764
No 498
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.56 E-value=0.71 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHH
Q 001020 218 VYTLGIWGIGGIGKTTLAGAIFN 240 (1187)
Q Consensus 218 ~~vv~I~G~gGiGKTtLA~~v~~ 240 (1187)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999876
No 499
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=82.48 E-value=1.5 Score=49.89 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCccchHHHHHHHHHhhcc-CCCCeEEEEEEecCcchHHHHHHHHHHH
Q 001020 195 KDLIGVESSIRQIESLLST-GSKDVYTLGIWGIGGIGKTTLAGAIFNR 241 (1187)
Q Consensus 195 ~~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 241 (1187)
..++|....++++.+.+.. ...+. .|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~-~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAEC-PVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCS-CEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCC-CeEEecCCCcCHHHHHHHHHHh
Confidence 3577777777777665543 22233 3589999999999999998864
No 500
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.45 E-value=0.64 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHh
Q 001020 220 TLGIWGIGGIGKTTLAGAIFNRI 242 (1187)
Q Consensus 220 vv~I~G~gGiGKTtLA~~v~~~~ 242 (1187)
+.+|+|..|.|||||+++++--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998644
Done!