Your job contains 1 sequence.
>001021
MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
VDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ
GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML
SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR
PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA
YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC
VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR
RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE
FLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVV
RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIE
YIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG
MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSET
GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI
TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM
RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG
GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN
KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001021
(1186 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 5605 0. 1
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 4148 0. 1
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 3982 0. 1
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 3982 0. 1
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 3982 0. 1
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 3976 0. 1
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 3976 0. 1
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 3976 0. 1
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 3972 0. 1
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 3965 0. 1
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 3956 0. 1
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 3891 0. 1
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 3826 0. 1
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 3780 0. 1
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 3700 0. 1
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 2245 0. 2
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 2245 0. 2
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 1955 0. 2
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 1930 0. 2
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 1898 0. 2
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 1898 0. 2
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 1858 0. 3
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 1758 3.6e-211 2
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 1703 4.4e-202 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 1615 4.8e-194 2
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 1589 2.7e-193 2
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 1610 1.7e-191 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 1810 1.2e-186 1
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 1707 9.6e-176 1
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 1167 1.3e-171 2
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 1620 1.6e-166 1
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 1616 4.2e-166 1
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 1616 4.2e-166 1
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 1616 4.2e-166 1
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 1613 8.7e-166 1
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 1613 8.7e-166 1
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 996 1.7e-165 2
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 1539 6.1e-158 1
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 750 1.5e-142 2
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 750 1.5e-142 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 799 2.1e-111 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 780 2.4e-106 3
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 830 4.0e-106 2
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 1044 1.7e-105 1
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 820 1.4e-103 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 802 4.0e-103 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 764 1.6e-102 3
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 775 6.8e-102 3
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 766 8.4e-102 3
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 804 4.4e-101 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 797 4.6e-101 3
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 797 4.6e-101 3
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 815 8.1e-101 2
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 815 4.1e-100 2
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 799 1.3e-99 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 802 8.7e-99 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 790 1.4e-98 3
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 815 1.8e-95 2
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 815 3.8e-93 2
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 746 4.1e-92 2
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 907 5.7e-91 1
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 738 3.8e-88 4
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 520 1.2e-86 5
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 520 1.2e-86 5
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 698 7.1e-71 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 486 3.6e-59 3
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 451 4.7e-56 5
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 280 4.1e-49 6
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 222 6.6e-47 7
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 192 9.5e-46 7
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 198 1.7e-45 7
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 195 7.3e-45 7
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 256 3.2e-44 6
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 191 4.2e-44 7
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 181 6.2e-44 7
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 189 8.6e-44 6
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 189 8.6e-44 6
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 249 1.8e-43 6
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 307 2.5e-43 2
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 197 1.2e-42 7
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 219 1.4e-42 6
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 198 1.8e-42 6
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 199 1.5e-40 6
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 388 1.0e-34 1
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 301 1.8e-30 4
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 301 1.8e-30 4
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 301 1.8e-30 4
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 301 1.8e-30 4
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 283 1.7e-23 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 251 1.9e-16 4
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 188 2.3e-13 1
UNIPROTKB|C9JZW8 - symbol:POLR2B "DNA-directed RNA polyme... 171 1.5e-11 1
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 151 2.1e-09 1
UNIPROTKB|C9JMN3 - symbol:POLR2B "DNA-directed RNA polyme... 141 2.4e-08 1
UNIPROTKB|F8VRS3 - symbol:POLR3B "DNA-directed RNA polyme... 115 1.4e-05 1
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 5605 (1978.1 bits), Expect = 0., P = 0.
Identities = 1074/1161 (92%), Positives = 1101/1161 (94%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAE-- 85
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAE
Sbjct: 26 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85
Query: 86 -------IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 138
IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT
Sbjct: 86 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145
Query: 139 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 198
ETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 146 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 205
Query: 199 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 258
MSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRML+R SAKGGSSGQYIR TL
Sbjct: 206 MSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTL 265
Query: 259 PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 318
PYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQ VALDY
Sbjct: 266 PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDY 325
Query: 319 IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 378
IGKRGATVGVT++KRIKYA++ILQKEMLPHVG G+ CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 326 IGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRR 385
Query: 379 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 438
EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 386 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 445
Query: 439 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 446 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 505
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP+VI
Sbjct: 506 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVI 565
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
PQATKIFVNG WVG+HRDP+MLVKT VDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 566 PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 625
Query: 619 RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXND 678
RPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKGF +D
Sbjct: 626 RPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISD 685
Query: 679 LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 738
LVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 686 LVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 745
Query: 739 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 798
TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMN
Sbjct: 746 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMN 805
Query: 799 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 858
QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPG
Sbjct: 806 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPG 865
Query: 859 TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 918
TRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV
Sbjct: 866 TRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 925
Query: 919 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 978
KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIG
Sbjct: 926 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIG 985
Query: 979 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1038
QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR LTAM
Sbjct: 986 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAM 1045
Query: 1039 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1098
IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+
Sbjct: 1046 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1105
Query: 1099 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1158
HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQ
Sbjct: 1106 HFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1165
Query: 1159 ELMAMAIAPRMLTKEDTKQSK 1179
ELM+MAIAPRMLTK K +K
Sbjct: 1166 ELMSMAIAPRMLTKH-LKSAK 1185
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 4148 (1465.2 bits), Expect = 0., P = 0.
Identities = 789/1158 (68%), Positives = 941/1158 (81%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ--SD---- 82
W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI+DES I +RPESQH+PGQ S+
Sbjct: 24 WTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNVST 83
Query: 83 ----FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD-GEEV 137
F +IYLSKP E DG + + P AR+RNLTYSAPL+VD+TK V+ G+E
Sbjct: 84 FSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDER 142
Query: 138 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 197
+ ++FIGKVPIMLRS YC L + ++DLT +GEC +DQGGYFIINGSEKVLIAQE
Sbjct: 143 RTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQE 202
Query: 198 KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 257
KM+ NHVYVFKK P+KY+YVAE+RS E+ +RP STM+++ML T+ G G I+AT
Sbjct: 203 KMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNK--GPVG--IKAT 258
Query: 258 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 317
+PYI+ ++P+IIVFRALGFVADKDILEHICYDF+D QMM+L+RPSLEE+FVIQ+Q+VALD
Sbjct: 259 VPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESFVIQSQEVALD 318
Query: 318 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 377
Y+GKRG+T+G TR++RIK+A+E+LQKEMLPHV +F ETKKA+YFGYI HRLLL +L R
Sbjct: 319 YLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLER 377
Query: 378 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 437
R DDRDH+ NKRLDLAGPLLG LFR LF+KLT+DVR Y+Q+C+D K+ A+K+KT
Sbjct: 378 RPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKT 437
Query: 438 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 497
ITSGLKYSLATGNWG + + GT++GV+QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQ
Sbjct: 438 ITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQ 497
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP-A 556
LHN+ WG++CP+ETPEGQACGLVKNLA+M YI+VGSA+ PILEFLEEW TEN EEIS +
Sbjct: 498 LHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDLS 557
Query: 557 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGR 616
I ATKIFVNG WVGIH P+ L+ T DV+ EV VVRDIR KELR+YTD GR
Sbjct: 558 SIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDPGR 617
Query: 617 CSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXX 676
C RPLF+V+ ++ IKK+ I L + + W DL+++G
Sbjct: 618 CCRPLFVVQDNKVQIKKQHINKLINNDEYK---WQDLLSEGIVEYIDAEEEETVLIAMTP 674
Query: 677 NDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 736
DLV P E TYTHCEIHPS+ILG+C SIIPFPDHNQSPRNTYQ+AMGKQAMG+
Sbjct: 675 EDLVPM---PNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGV 731
Query: 737 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 796
Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+LHFR+LPAG N VAIACYSGYNQEDSVI
Sbjct: 732 YITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVI 791
Query: 797 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 856
+NQS+IDRG FRS+F+R+Y+DE+KK +L++E F +P+R GMRHGSY+K+DDDGL
Sbjct: 792 LNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVA 851
Query: 857 PGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 914
PG RV+G+D+IIGKTTP+ S D+ + R+T+RD S +LR SETG+VDQV+LTT+ +G
Sbjct: 852 PGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEG 911
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
+F KVRVRS+R+PQIGDKFSSRHGQKGT GM Y QED+P+TVEGI PDIIVNPHAIPSR
Sbjct: 912 FKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSR 971
Query: 975 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
MTIGQLIEC++GKV+A G EGDATPFTDVTV+ IS+ALHK GYQM G E MYNGHTGRR
Sbjct: 972 MTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGRR 1031
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+
Sbjct: 1032 MDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMIS 1091
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FLKERLFDQSD+YRVH+C+ CGLIAIANLKKNSFECR CKNKT I Q+ +PYA K
Sbjct: 1092 HGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAK 1151
Query: 1155 LLFQELMAMAIAPRMLTK 1172
LLFQELM+M+IAPRM T+
Sbjct: 1152 LLFQELMSMSIAPRMFTQ 1169
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 3982 (1406.8 bits), Expect = 0., P = 0.
Identities = 771/1157 (66%), Positives = 913/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE +G RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 977 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1157 LLFQELMSMSIAPRMMS 1173
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 3982 (1406.8 bits), Expect = 0., P = 0.
Identities = 771/1157 (66%), Positives = 913/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE +G RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 977 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1157 LLFQELMSMSIAPRMMS 1173
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 3982 (1406.8 bits), Expect = 0., P = 0.
Identities = 771/1157 (66%), Positives = 913/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 79
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 80 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 136
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 137 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 195
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 196 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 254
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 255 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 314
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 315 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 374
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 375 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 434
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 435 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 494
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 495 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 554
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 555 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 614
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 615 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 674 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 729
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 730 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 789
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 790 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 849
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE +G RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 850 GVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 909
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 910 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 969
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 970 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1029
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1030 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1089
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1090 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1149
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1150 LLFQELMSMSIAPRMMS 1166
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 3976 (1404.7 bits), Expect = 0., P = 0.
Identities = 770/1157 (66%), Positives = 912/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 79
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 80 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 136
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 137 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 195
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 196 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 254
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 255 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 314
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 315 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 374
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 375 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 434
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 435 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 494
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 495 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 554
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 555 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 614
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 615 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 674 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 729
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 730 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 789
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 790 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 849
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 850 GVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 909
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 910 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 969
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 970 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1029
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1030 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1089
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1090 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1149
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1150 LLFQELMSMSIAPRMMS 1166
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 3976 (1404.7 bits), Expect = 0., P = 0.
Identities = 770/1157 (66%), Positives = 912/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 977 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1157 LLFQELMSMSIAPRMMS 1173
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 3976 (1404.7 bits), Expect = 0., P = 0.
Identities = 770/1157 (66%), Positives = 912/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 977 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1157 LLFQELMSMSIAPRMMS 1173
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 3972 (1403.3 bits), Expect = 0., P = 0.
Identities = 769/1157 (66%), Positives = 912/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH Y+KLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 977 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1157 LLFQELMSMSIAPRMMS 1173
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 3965 (1400.8 bits), Expect = 0., P = 0.
Identities = 767/1157 (66%), Positives = 912/1157 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GE+ +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEDQLQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + + AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DVIIGKT P ++DE + R+T+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR+
Sbjct: 977 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IA
Sbjct: 1037 ITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIA 1096
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACK
Sbjct: 1097 HGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACK 1156
Query: 1155 LLFQELMAMAIAPRMLT 1171
LLFQELM+M+IAPRM++
Sbjct: 1157 LLFQELMSMSIAPRMMS 1173
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 3956 (1397.6 bits), Expect = 0., P = 0.
Identities = 767/1158 (66%), Positives = 912/1158 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 28 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLL 87
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GE+ +TQ
Sbjct: 88 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEDQLQTQ 144
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 145 H-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 203
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLP
Sbjct: 204 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 262
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 263 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 322
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY-IIHRLLLCALGRR 378
G RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY ++HRLLL ALGRR
Sbjct: 323 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGRR 382
Query: 379 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 438
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I
Sbjct: 383 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 442
Query: 439 TSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 497
+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQ
Sbjct: 443 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 502
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 557
LHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 503 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 562
Query: 558 IPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGR 616
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 563 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 622
Query: 617 CSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXX 676
RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 623 ICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTP 681
Query: 677 NDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 736
+DL + + AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 682 DDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 737
Query: 737 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 796
Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVI
Sbjct: 738 YITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVI 797
Query: 797 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 856
MN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 798 MNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIA 857
Query: 857 PGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 914
PG RVSG+DVIIGKT P ++DE + R+T+RD S LR SETG+VDQV++T N +G
Sbjct: 858 PGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEG 917
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSR
Sbjct: 918 YKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSR 977
Query: 975 MTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGR 1033
MTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR
Sbjct: 978 MTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGR 1037
Query: 1034 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1093
++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC I
Sbjct: 1038 KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQI 1097
Query: 1094 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1153
AHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYAC
Sbjct: 1098 AHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYAC 1157
Query: 1154 KLLFQELMAMAIAPRMLT 1171
KLLFQELM+M+IAPRM++
Sbjct: 1158 KLLFQELMSMSIAPRMMS 1175
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 3891 (1374.8 bits), Expect = 0., P = 0.
Identities = 753/1156 (65%), Positives = 894/1156 (77%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S IE++ E+QH G+
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK K +G + ETQ
Sbjct: 88 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT---KNVEGLDPVETQ 144
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 145 H-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 203
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGGSSGQYIRATLP 259
N VYVF + KYA+ E+RS E +RP ST++V M++R S K + GQ I A LP
Sbjct: 204 NTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILP 262
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q Q VAL++I
Sbjct: 263 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFI 322
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT+DKRIKYAKEILQKEMLPHVG DFCETKKAY+ GY++HRLLL +LGRR
Sbjct: 323 GARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 382
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR LF+ L ++VR Y QK +D GKD NL+ AIK IT
Sbjct: 383 LDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIIT 442
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GL+YSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQL
Sbjct: 443 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 502
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEI+P+ I
Sbjct: 503 HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 562
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIHRDPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 563 ADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRI 622
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVE LL+KK + L++R+ + W LVA G
Sbjct: 623 CRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLEEETVMIAMSPY 681
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL Q + + AY TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 682 DLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 738
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+
Sbjct: 739 ITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 798
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N S+++RGFFRS+F+RSY+D E K +E+F +P R GMR+ YDKLDDDG+ P
Sbjct: 799 NASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAP 858
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSG+DV+IGKT P + DE R+++RD S LR+SETG+VDQV+LT N++G
Sbjct: 859 GIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGY 918
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDII+NPHAIPSRM
Sbjct: 919 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRM 978
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
TIG LIEC+ GK+ ++ G+ GDATPF D V V IS L + GY +RG E MYNGHTGR+
Sbjct: 979 TIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRK 1038
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
+ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+
Sbjct: 1039 INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS 1098
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1154
HGA+ FL+ERLF+ SD YRVH+C CGLIAIANL+ N+FEC+GCKNKT I QV +PYA K
Sbjct: 1099 HGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAK 1158
Query: 1155 LLFQELMAMAIAPRML 1170
LLFQELM+M IAPR++
Sbjct: 1159 LLFQELMSMNIAPRLM 1174
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 3826 (1351.9 bits), Expect = 0., P = 0.
Identities = 739/1096 (67%), Positives = 868/1096 (79%)
Query: 83 FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 142
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +TQ
Sbjct: 13 FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQH 69
Query: 143 FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 202
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN
Sbjct: 70 -QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATN 128
Query: 203 HVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPY 260
VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I ATLPY
Sbjct: 129 TVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPY 187
Query: 261 IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 320
I+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG
Sbjct: 188 IKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIG 247
Query: 321 KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAE 380
RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 248 SRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRREL 307
Query: 381 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 440
DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+
Sbjct: 308 DDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISD 367
Query: 441 GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 499
GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLH
Sbjct: 368 GLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLH 427
Query: 500 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 559
N+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 428 NTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIA 487
Query: 560 QATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRCS 618
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 488 DATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRIC 547
Query: 619 RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXND 678
RPL IVEKQ+LL+KKR I L++RE + W DLVA G +D
Sbjct: 548 RPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDD 606
Query: 679 LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 738
L + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+
Sbjct: 607 LQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 662
Query: 739 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 798
TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN
Sbjct: 663 TNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMN 722
Query: 799 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 858
+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL PG
Sbjct: 723 RSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPG 782
Query: 859 TRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 916
RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +G +
Sbjct: 783 VRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYK 842
Query: 917 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 976
F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMT
Sbjct: 843 FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMT 902
Query: 977 IGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
IG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TGR++
Sbjct: 903 IGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKI 962
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAH
Sbjct: 963 TSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAH 1022
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 1155
GA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYACKL
Sbjct: 1023 GAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKL 1082
Query: 1156 LFQELMAMAIAPRMLT 1171
LFQELM+M+IAPRM++
Sbjct: 1083 LFQELMSMSIAPRMMS 1098
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 3780 (1335.7 bits), Expect = 0., P = 0.
Identities = 736/1172 (62%), Positives = 883/1172 (75%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH------NPGQQS- 81
W VISAYF+EKGLVRQQLDSFDEF+Q +Q IV++S +E++ E+QH NP + S
Sbjct: 34 WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSL 93
Query: 82 DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + P ARLRNLTY++PLYVD+TK V + E+V
Sbjct: 94 KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKV---- 149
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
+ KVF+GKVP+MLRSSYC L +++DLTEL ECP D GGYF+INGSEKVLIAQEKM+T
Sbjct: 150 -YDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMAT 208
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS--GQYIRATLP 259
N VYVF + KYA+ E RS E+ +RP STM+V ML+R G + GQ I LP
Sbjct: 209 NTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILP 267
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YI+ EIPI+IVFRALGFV+D+DIL HI YDF D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 268 YIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFI 327
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVTR++RIKYA+EILQKE+LPHVG + CETKKA++ GY++HRLLL ALGRR
Sbjct: 328 GARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRE 387
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDH GNKRLDLAGPLL LFR LFR L +++R QK ++ D L +K TIT
Sbjct: 388 LDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTIT 447
Query: 440 SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GL YSLATGNWG Q A +RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQL
Sbjct: 448 RGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQL 507
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS PILEFLEEW EN EE+SP+ I
Sbjct: 508 HNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAI 567
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNG WVGIHR+P+ L+ T +D+ +EV +VRDIR +E+RIYTD GR
Sbjct: 568 ADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRV 627
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQR-ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXX 676
RPL IVE Q+L +KKR I L++ + W DLV G
Sbjct: 628 CRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMP 687
Query: 677 NDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 736
DL Y DT+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 688 EDLRSG------GYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 741
Query: 737 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 796
Y TN+ RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINAIVAI YSGYNQEDSVI
Sbjct: 742 YTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVI 801
Query: 797 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 856
MN S+IDRG FRS+F+RSYRD E + +E +P R GMRH YDKLD+DG+
Sbjct: 802 MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIIS 861
Query: 857 PGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 914
PG RVSG+DVIIGKT P D+ +Y +RD S LR SETG+VDQV+L+ N+DG
Sbjct: 862 PGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDG 921
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
+FVK+R+RSVR+PQIGDKF+SRHGQKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSR
Sbjct: 922 NKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSR 981
Query: 975 MTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGR 1033
MTIG LIEC+ GK++A+ G+ GDATPF D V V IS L + GY +RG E MYNGHTG+
Sbjct: 982 MTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGK 1041
Query: 1034 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1093
+LT IF GPTYYQRLKHMVDDKIHSR RGP+Q++ RQP EGR+RDGGLRFGEMERDC I
Sbjct: 1042 KLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQI 1101
Query: 1094 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1153
+HGA+ FL+ERLF+ SD Y V+VC +CGLI +ANL+ NSFEC+ C+NKT + V IPYAC
Sbjct: 1102 SHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYAC 1161
Query: 1154 KLLFQELMAMAIAPRMLTK-EDTKQSKDHKKK 1184
KLLFQELM+M+IAPR++ K +K+SK H+ +
Sbjct: 1162 KLLFQELMSMSIAPRLMVKPRQSKRSK-HQSE 1192
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 3700 (1307.5 bits), Expect = 0., P = 0.
Identities = 721/1101 (65%), Positives = 855/1101 (77%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLL 86
Query: 83 -FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK +IK DGEE +TQ
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK---DGEEQQQTQ 143
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLP 259
N VYVF K+ +KYAY E RS E+ +RP ST++V M++R K + GQ I +TLP
Sbjct: 203 NTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLP 261
Query: 260 YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
YIR E+PIIIVFRALGFV+D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++I
Sbjct: 262 YIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 320 GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
G RGA GVT+++RIKYAKE+LQKE+LPHVG DFCETKKAY+ GY++HRLLL ALGRR
Sbjct: 322 GSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
DDRDHYGNKRLDLAGPLL LFR +F+ L +++R Y QK +D GKD NL+ AIK + I+
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIIS 441
Query: 440 SGLKYSLATGNWGQANAAG-TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498
GLKYSLATGNWG A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQL
Sbjct: 442 DGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 558
HN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA I
Sbjct: 502 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 561
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYGRC 617
ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD GR
Sbjct: 562 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 621
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXN 677
RPL IVEKQ+LL+K+R I L++RE + W DLVA G +
Sbjct: 622 CRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
DL + + AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 681 DLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIM
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 798 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
N+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL P
Sbjct: 797 NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAP 856
Query: 858 GTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 915
G RVSGEDVIIGKT P + DE RYT+RD S LR SETG+VDQV++T N +G
Sbjct: 857 GVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE + +EGITPDII+NPHAIPSRM
Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVRVYIIEGITPDIIINPHAIPSRM 976
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
T+G LIEC+ GKV+A+ G+ GDATPF D V V +S L + GY +RG E +YNG TGR+
Sbjct: 977 TVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRK 1036
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR--DGGLRFGEMERDCM 1092
LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSR DGGLRFGEMERDC
Sbjct: 1037 LTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRRSDGGLRFGEMERDCQ 1096
Query: 1093 IAHGASHFLKERLFDQSDAYR 1113
IAHGA+ FLKERLF+ SD Y+
Sbjct: 1097 IAHGAAQFLKERLFEASDPYQ 1117
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 2245 (795.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 439/870 (50%), Positives = 601/870 (69%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ-QSD---- 82
+W VI ++F GLV QQ++S+++FI+ MQEI+DE IEIRP+ Q+ + ++D
Sbjct: 36 SWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDNIIY 95
Query: 83 ---FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKKGHDGEEV 137
F ++ L +P E + L+P+ ARLRNLTYS+ +Y+D+ + +I + +
Sbjct: 96 SLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVL 155
Query: 138 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 197
E + ++ +G++P+ML+S +C E ++ ++GEC YDQGGYFI+NG EKVL+AQE
Sbjct: 156 KEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQE 215
Query: 198 KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS-AKGGS--SGQYI 254
+M+ N +YVFKK+QP+K+ +VAE+RS E +++ S V+M +R+ ++ GS SG +
Sbjct: 216 RMANNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSGFSVKMKTRSGGSQYGSNKSGGQL 274
Query: 255 RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 314
ATLPYIRTEI + I+FRALG +D+DIL+ I YDF D M+ LR +LEE Q V
Sbjct: 275 VATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPTQDV 334
Query: 315 ALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 374
LD+IGKRG TVG +R+KRI YAKE+L+KE+LPH+GT E+KK+Y+ GY+I+RLLL
Sbjct: 335 CLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAE 394
Query: 375 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 434
LGR EDDRDH+G KRLD+AGPL+ F FRK+ +DVR +Q+ +DN K ++ AI+
Sbjct: 395 LGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAIR 454
Query: 435 A-KTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 492
+ IT G++Y LATGNWG+ + R GV+QVLNRLTY+S LSHLRRLN+P+GREGK+
Sbjct: 455 SCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKM 514
Query: 493 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 552
AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I+VG++ I EFL EWG E+ +E
Sbjct: 515 AKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLDE 574
Query: 553 ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYT 612
+ P ++ + K+F+NG WVG + L++T D++ E +VRD+ KE++I+T
Sbjct: 575 VPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIFT 634
Query: 613 DYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXX 668
D GR RPL++V+ + +L + K + +++ PE W L+ +G
Sbjct: 635 DSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKY--PETYNWDYLIQEGIIEYIDCEEEE 692
Query: 669 XXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 728
+DL Y + +THCEIHPSLILGVCASIIPF DHNQSPRNTYQSA
Sbjct: 693 TTMISMFIDDLKTGT-----GYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSA 747
Query: 729 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 788
MGKQAMGIYVTN+ R+DTLA++LYYPQKPLV T+ ME+L FR+LPAGINAIVAI CY+G
Sbjct: 748 MGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTG 807
Query: 789 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 848
YNQEDS+IMNQSSIDRG FRS+F+R+Y EEK+ G+L+ E F +P ++ G Y K
Sbjct: 808 YNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYTK 867
Query: 849 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 878
LDDDGL PG RV G+D+IIGK +P DE
Sbjct: 868 LDDDGLIAPGIRVLGDDIIIGKVSPNIDDE 897
Score = 1048 (374.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 186/286 (65%), Positives = 240/286 (83%)
Query: 888 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 947
++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 948 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1007
Y EDMP++ GI PDII+NPHA+PSRMTIG L+EC+ GKVAA G EGDATPF+ +TV
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173
Query: 1008 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1067
IS+ LH GY+ G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233
Query: 1068 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1127
+TRQP EGRSRDGGLRFGEMERDCMI+HG++ LKERLF++SDAYRVHVC++CGL IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293
Query: 1128 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
+ KN++EC C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 2245 (795.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 439/870 (50%), Positives = 601/870 (69%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ-QSD---- 82
+W VI ++F GLV QQ++S+++FI+ MQEI+DE IEIRP+ Q+ + ++D
Sbjct: 36 SWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDNIIY 95
Query: 83 ---FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKKGHDGEEV 137
F ++ L +P E + L+P+ ARLRNLTYS+ +Y+D+ + +I + +
Sbjct: 96 SLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVL 155
Query: 138 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 197
E + ++ +G++P+ML+S +C E ++ ++GEC YDQGGYFI+NG EKVL+AQE
Sbjct: 156 KEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQE 215
Query: 198 KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS-AKGGS--SGQYI 254
+M+ N +YVFKK+QP+K+ +VAE+RS E +++ S V+M +R+ ++ GS SG +
Sbjct: 216 RMANNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSGFSVKMKTRSGGSQYGSNKSGGQL 274
Query: 255 RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 314
ATLPYIRTEI + I+FRALG +D+DIL+ I YDF D M+ LR +LEE Q V
Sbjct: 275 VATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPTQDV 334
Query: 315 ALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 374
LD+IGKRG TVG +R+KRI YAKE+L+KE+LPH+GT E+KK+Y+ GY+I+RLLL
Sbjct: 335 CLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAE 394
Query: 375 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 434
LGR EDDRDH+G KRLD+AGPL+ F FRK+ +DVR +Q+ +DN K ++ AI+
Sbjct: 395 LGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAIR 454
Query: 435 A-KTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 492
+ IT G++Y LATGNWG+ + R GV+QVLNRLTY+S LSHLRRLN+P+GREGK+
Sbjct: 455 SCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKM 514
Query: 493 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 552
AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I+VG++ I EFL EWG E+ +E
Sbjct: 515 AKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLDE 574
Query: 553 ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYT 612
+ P ++ + K+F+NG WVG + L++T D++ E +VRD+ KE++I+T
Sbjct: 575 VPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIFT 634
Query: 613 DYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXX 668
D GR RPL++V+ + +L + K + +++ PE W L+ +G
Sbjct: 635 DSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKY--PETYNWDYLIQEGIIEYIDCEEEE 692
Query: 669 XXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 728
+DL Y + +THCEIHPSLILGVCASIIPF DHNQSPRNTYQSA
Sbjct: 693 TTMISMFIDDLKTGT-----GYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSA 747
Query: 729 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 788
MGKQAMGIYVTN+ R+DTLA++LYYPQKPLV T+ ME+L FR+LPAGINAIVAI CY+G
Sbjct: 748 MGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTG 807
Query: 789 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 848
YNQEDS+IMNQSSIDRG FRS+F+R+Y EEK+ G+L+ E F +P ++ G Y K
Sbjct: 808 YNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYTK 867
Query: 849 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 878
LDDDGL PG RV G+D+IIGK +P DE
Sbjct: 868 LDDDGLIAPGIRVLGDDIIIGKVSPNIDDE 897
Score = 1048 (374.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 186/286 (65%), Positives = 240/286 (83%)
Query: 888 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 947
++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 948 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1007
Y EDMP++ GI PDII+NPHA+PSRMTIG L+EC+ GKVAA G EGDATPF+ +TV
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173
Query: 1008 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1067
IS+ LH GY+ G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233
Query: 1068 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1127
+TRQP EGRSRDGGLRFGEMERDCMI+HG++ LKERLF++SDAYRVHVC++CGL IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293
Query: 1128 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
+ KN++EC C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 1955 (693.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 387/659 (58%), Positives = 492/659 (74%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD------ 82
W VIS++FEE L RQQL SFDEF+QNTMQEIVD+ + + + +QH G Q D
Sbjct: 18 WTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHT-GAQGDVTRRYE 76
Query: 83 --FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD----GEE 136
F +IYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K+V+ GEE
Sbjct: 77 INFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEE 136
Query: 137 --VTETQDF--TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 192
+ E +D +KVFIGK+PIMLRS++C L S+ +L +L ECPYDQGGYFIINGSEKV
Sbjct: 137 EWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV 196
Query: 193 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 252
+IAQE+ + N V VFKK P+ AYVAE+RS E +R S+M +++++R + +SGQ
Sbjct: 197 IIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE---NSGQ 253
Query: 253 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 312
IRATLPYIR++IPI+IVFRALG V D+DILEHICYD D QM+E+++P +EEAFVIQ++
Sbjct: 254 TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDK 313
Query: 313 QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
+ALDYIGKRG+T GVTR+KR++YA +ILQKE+LPH+ T + ET+KA++ GY+IHR+LL
Sbjct: 314 DIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLL 373
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
CAL RR DDRDH+G KRLDLAGPLL LFRMLFRK+TRDV Y+QKCV+ ++ NL A
Sbjct: 374 CALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLA 433
Query: 433 IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 491
+K+ IT+GL+YSLATGNWG Q + R GVSQVLNR T+ASTLSHLRR N+PIGR+GK
Sbjct: 434 VKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 493
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 551
LAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS + PI+EFLEEWG E E
Sbjct: 494 LAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLE 553
Query: 552 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIY 611
+ +P+ P ATK+FVNG W+G+HRDP L +T +D++ EV +VRDIR KELR++
Sbjct: 554 DYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLF 613
Query: 612 TDYGRCSRPLFIVEKQ-------RLLIKKRDIIAL-QQRE----SPEDG-GWHDLVAKG 657
TD GR RPLFIV+ L I+K I L + ++ PE GW LV+ G
Sbjct: 614 TDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSG 672
Score = 1877 (665.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 347/493 (70%), Positives = 415/493 (84%)
Query: 683 RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 741
R+ P + +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY
Sbjct: 715 RVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNY 774
Query: 742 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 801
Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+S
Sbjct: 775 QVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQAS 834
Query: 802 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 861
IDRG FRS+F+R+Y D+EKK+G V E+F RP RS T+ M+HG+YDKL+DDGL PGTRV
Sbjct: 835 IDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRV 894
Query: 862 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 919
SGED+IIGKT PI D E GQ ++ + +RD S LR +E+G+VDQV++TTN +GL+FVK
Sbjct: 895 SGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVK 954
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
VR+RS RIPQIGDKF+SRHGQKGT+GMTY EDMP++ +GI PDII+NPHAIPSRMT+
Sbjct: 955 VRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAH 1014
Query: 980 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1039
L+EC + KV+A G EGDATPFTDVTV+ +SK L G+Q RGFE MY+GHTGR+L A +
Sbjct: 1015 LVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQV 1074
Query: 1040 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1099
FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S
Sbjct: 1075 FLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSS 1134
Query: 1100 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1159
L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T QV++PYA KLLFQE
Sbjct: 1135 VLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194
Query: 1160 LMAMAIAPRMLTK 1172
LM+M IAPR+ TK
Sbjct: 1195 LMSMNIAPRLFTK 1207
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 1930 (684.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 357/485 (73%), Positives = 413/485 (85%)
Query: 690 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 749
+A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A
Sbjct: 734 HATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMA 793
Query: 750 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 809
+LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRS
Sbjct: 794 NILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRS 853
Query: 810 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 869
LFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL PG RVSGEDVIIG
Sbjct: 854 LFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIG 913
Query: 870 KTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 927
KTTPIS DE + GQ + Y ++RD S LR +E G+VDQVL+TTN DGL+FVKVRVR+ +I
Sbjct: 914 KTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKI 973
Query: 928 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 987
PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ K
Sbjct: 974 PQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK 1033
Query: 988 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1047
VAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQ
Sbjct: 1034 VAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQ 1093
Query: 1048 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 1107
RL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL +
Sbjct: 1094 RLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLME 1153
Query: 1108 QSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIA 1166
SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1154 ASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNIT 1213
Query: 1167 PRMLT 1171
PR+ T
Sbjct: 1214 PRLYT 1218
Score = 1770 (628.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 352/651 (54%), Positives = 468/651 (71%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS------ 81
+WAVISA+F EKGLV QQLDSF++F+ T+Q+I+ E + + + +QH +
Sbjct: 30 SWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYE 89
Query: 82 -DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----GHD--- 133
F +IY++KPM+ ESDG T L+P+ ARLRNLTYS+ L+VDV KR + G +
Sbjct: 90 ISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKY 149
Query: 134 ---GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 190
EE + + KVFIG++PIMLRS C L + +E DL +L ECP+D GGYFIINGSE
Sbjct: 150 ELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSE 209
Query: 191 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 250
KVLIAQE+ + N V VFKK P+ ++VAE+RS E +R ST+ V++ R GSS
Sbjct: 210 KVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRE----GSS 265
Query: 251 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 310
+ I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L+P +E+ FVIQ
Sbjct: 266 ARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQ 325
Query: 311 NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 370
+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E++KA++ GY+I+RL
Sbjct: 326 DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 385
Query: 371 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 430
LLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LF+KLT+D+ Y+Q+ V+ D N++
Sbjct: 386 LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMK 445
Query: 431 FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 489
AI AKTITSGLKY+LATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+PIGR+
Sbjct: 446 LAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 505
Query: 490 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 549
GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI+ FL EWG E
Sbjct: 506 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEP 565
Query: 550 FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELR 609
E+ P P AT++FVNG W G+HR+P L++T D+N EV ++RDIR KEL+
Sbjct: 566 LEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELK 625
Query: 610 IYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGGWHDL 653
I+TD GR RPLFIVE + L ++K I L E + +GG+ D+
Sbjct: 626 IFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDV 676
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1898 (673.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 351/483 (72%), Positives = 411/483 (85%)
Query: 693 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 752
TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 744 TYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 803
Query: 753 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 812
YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 804 YYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 863
Query: 813 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 872
RSY D EK+ G E F +P RS+T+ ++HG+Y+KLD+DGL PG RVSGED+IIGKTT
Sbjct: 864 RSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTT 923
Query: 873 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 930
PI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQI
Sbjct: 924 PIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQI 983
Query: 931 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 990
GDKF+SRHGQKGT+G+TY EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV++
Sbjct: 984 GDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSS 1043
Query: 991 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1050
G EGDA+PFTDVT + IS L GYQ RGFE MYNGHTG++L A +F GPTYYQRL+
Sbjct: 1044 LSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103
Query: 1051 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163
Query: 1111 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
A+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+
Sbjct: 1164 AFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223
Query: 1170 LTK 1172
T+
Sbjct: 1224 YTE 1226
Score = 1797 (637.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 349/614 (56%), Positives = 458/614 (74%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH-------NPGQQS 81
W VI+++F+EKGLV QQLDSFDEF++ ++QE+V E + + + +QH N +
Sbjct: 26 WTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRYEI 85
Query: 82 DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK------KGHDGE 135
F +IY+SKP TE DG T +FP+ ARLRNLTYS+PLYVD+T +V K K ++ E
Sbjct: 86 TFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNELE 145
Query: 136 EVTETQDF---TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 192
+ E D TKVF+GKVPIMLRS +C L +E + EL ECPYD GGYF+INGSEKV
Sbjct: 146 WIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV 205
Query: 193 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 252
LIAQE+ + N V VFKK P+ ++VAE+RS E +R S+M +++ R G SG+
Sbjct: 206 LIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVSGR 263
Query: 253 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 312
I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD D QM+E+L+P +EE FVIQ +
Sbjct: 264 TIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQER 323
Query: 313 QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
+VALD+IG+RG +G+ R+KRI+YAK+ILQKE+LP++ + ET+KA++ GY+++RLLL
Sbjct: 324 EVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLL 382
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
CAL R+ DDRDH+G KRLDLAGPLL LFR+LF+KLT+D+ Y+Q+CV+NG D N+ A
Sbjct: 383 CALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVTLA 442
Query: 433 IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 491
+K++TIT GL+YSLATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+PIGR+GK
Sbjct: 443 VKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 502
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 551
+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ + PIL FL ++G E E
Sbjct: 503 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLE 562
Query: 552 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIY 611
+ P+ P +T++FVNG WVG+HRDP LV D++ EV ++RDIR KE +I+
Sbjct: 563 DYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFKIF 622
Query: 612 TDYGRCSRPLFIVE 625
TD GR RPLFIV+
Sbjct: 623 TDAGRVYRPLFIVD 636
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1898 (673.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 351/483 (72%), Positives = 411/483 (85%)
Query: 693 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 752
TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 744 TYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 803
Query: 753 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 812
YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 804 YYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 863
Query: 813 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 872
RSY D EK+ G E F +P RS+T+ ++HG+Y+KLD+DGL PG RVSGED+IIGKTT
Sbjct: 864 RSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTT 923
Query: 873 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 930
PI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQI
Sbjct: 924 PIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQI 983
Query: 931 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 990
GDKF+SRHGQKGT+G+TY EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV++
Sbjct: 984 GDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSS 1043
Query: 991 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1050
G EGDA+PFTDVT + IS L GYQ RGFE MYNGHTG++L A +F GPTYYQRL+
Sbjct: 1044 LSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103
Query: 1051 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163
Query: 1111 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
A+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+
Sbjct: 1164 AFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223
Query: 1170 LTK 1172
T+
Sbjct: 1224 YTE 1226
Score = 1797 (637.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 349/614 (56%), Positives = 458/614 (74%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH-------NPGQQS 81
W VI+++F+EKGLV QQLDSFDEF++ ++QE+V E + + + +QH N +
Sbjct: 26 WTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRYEI 85
Query: 82 DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK------KGHDGE 135
F +IY+SKP TE DG T +FP+ ARLRNLTYS+PLYVD+T +V K K ++ E
Sbjct: 86 TFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNELE 145
Query: 136 EVTETQDF---TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 192
+ E D TKVF+GKVPIMLRS +C L +E + EL ECPYD GGYF+INGSEKV
Sbjct: 146 WIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV 205
Query: 193 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 252
LIAQE+ + N V VFKK P+ ++VAE+RS E +R S+M +++ R G SG+
Sbjct: 206 LIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVSGR 263
Query: 253 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 312
I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD D QM+E+L+P +EE FVIQ +
Sbjct: 264 TIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQER 323
Query: 313 QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
+VALD+IG+RG +G+ R+KRI+YAK+ILQKE+LP++ + ET+KA++ GY+++RLLL
Sbjct: 324 EVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLL 382
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
CAL R+ DDRDH+G KRLDLAGPLL LFR+LF+KLT+D+ Y+Q+CV+NG D N+ A
Sbjct: 383 CALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVTLA 442
Query: 433 IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 491
+K++TIT GL+YSLATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+PIGR+GK
Sbjct: 443 VKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 502
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 551
+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ + PIL FL ++G E E
Sbjct: 503 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLE 562
Query: 552 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIY 611
+ P+ P +T++FVNG WVG+HRDP LV D++ EV ++RDIR KE +I+
Sbjct: 563 DYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFKIF 622
Query: 612 TDYGRCSRPLFIVE 625
TD GR RPLFIV+
Sbjct: 623 TDAGRVYRPLFIVD 636
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 1858 (659.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 350/484 (72%), Positives = 405/484 (83%)
Query: 691 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 750
A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+ RM+T+A
Sbjct: 761 AHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMAN 820
Query: 751 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 810
+LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 821 ILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 880
Query: 811 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 870
F+R+Y D EK +G V E F +P RS+T+GMR G+YDKLD+DG+ PG RVSGED+IIGK
Sbjct: 881 FYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGK 940
Query: 871 TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 928
T P++ D E GQ ++ +T+ D S LR +E G+VDQVL+TT D LR VKVR+R ++P
Sbjct: 941 TAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVP 1000
Query: 929 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 988
QIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI LIEC + KV
Sbjct: 1001 QIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKV 1060
Query: 989 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1048
+A G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 1061 SALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 1120
Query: 1049 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1108
L+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD
Sbjct: 1121 LRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDV 1180
Query: 1109 SDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1167
SD +RVH+C+ CGL+ IA LKK FECR C NK I QVHIPYA KLLFQEL AM I+
Sbjct: 1181 SDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNISA 1240
Query: 1168 RMLT 1171
RM T
Sbjct: 1241 RMFT 1244
Score = 1511 (537.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 293/527 (55%), Positives = 386/527 (73%)
Query: 135 EEVTETQDFTK---VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 191
EE+ D K V IGK+PIML+S YC L E+ L + ECPYD GGYFIINGSEK
Sbjct: 164 EEMALPPDQAKEETVHIGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEK 223
Query: 192 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR-TSAKGGSS 250
VLIAQE+ + N V VFKK P+ YVAE+RS E +R S + +++ + SAKGG
Sbjct: 224 VLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGF- 282
Query: 251 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 310
G IR+TLPYI+ +IPI+IVFRALG V+D+DIL HICYD DT M+E+L+P +EE FVIQ
Sbjct: 283 GPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQ 342
Query: 311 NQQVALDYIGKRGATVG-VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 369
+++VALD+I KRG++ + ++R++YA+EI+QKE+LPH+ + ET+KA++ GY++HR
Sbjct: 343 DREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHR 402
Query: 370 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 429
LL CALGRR DDRDH+G KRLDLAGPLL LFR+LF ++TRD++ YVQ+CV++ +++ L
Sbjct: 403 LLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYL 462
Query: 430 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 488
+KA T+T GL+Y+LATGNWG Q AA +AGVSQVL+R TYASTLSHLRR N+PIGR
Sbjct: 463 NVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGR 522
Query: 489 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 548
+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ + E
Sbjct: 523 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNME 582
Query: 549 NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKEL 608
EE P V P ATK+FVNG WVG+HR P LV+T ++ EV ++RDIR +E
Sbjct: 583 VLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREF 642
Query: 609 RIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQ-RESPED 647
+I+TD GR RPLF+V+ L++ K I L++ +E P D
Sbjct: 643 KIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPD 689
Score = 235 (87.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 48/110 (43%), Positives = 71/110 (64%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE----IRP-ESQHNP----GQ 79
W VIS++F+ KGLV QQLDSFDEFI +T+QE+V+E + I P E + +P
Sbjct: 26 WTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDPVVVRRY 85
Query: 80 QSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 129
+ F + LS+PM E DG + P ARLRN+TY++PLY+ + K++++
Sbjct: 86 ELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIME 135
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 1758 (623.9 bits), Expect = 3.6e-211, Sum P(2) = 3.6e-211
Identities = 407/1048 (38%), Positives = 584/1048 (55%)
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 207
IG++P+MLRS+ C L +E ++ L ECP D GGYFI+ G+EKV++ QE++S N + V
Sbjct: 157 IGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV- 215
Query: 208 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 267
+ +P K + A V S + R T + K G Y++ + +IPI
Sbjct: 216 -EAEPKKGLWQASVTS--STHERKSKTYVI-------TKNGKL--YLKHNS--VADDIPI 261
Query: 268 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQVALDYIGKR--- 322
++V +A+G +D++I E + + +L PS+EE I Q AL+YIG R
Sbjct: 262 VVVLKAMGLQSDQEIFELVAG--AEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKV 319
Query: 323 GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 382
G R + A E+L +L H+ + KA Y G + R+L+ + DD
Sbjct: 320 NRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDD 379
Query: 383 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKT 437
RD+ GNKRL+LAG LL LF LF+K D++ + K + D Q + +
Sbjct: 380 RDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDH 439
Query: 438 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 497
IT G+ +L+TGNW RAGV+ VL+RL+Y S L + R+ S + K++ PR
Sbjct: 440 ITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRS 499
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 557
L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI++ +G E+ IS
Sbjct: 500 LQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRE 559
Query: 558 I-PQATK-IFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 615
+ T +++NG +GI R P + V + ++ +G+ + + + I TD G
Sbjct: 560 LHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGG 619
Query: 616 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 675
R RPL IV+ ++ + I L++ + G+ D + +G
Sbjct: 620 RICRPLIIVQNGLPKVESKHIRLLKEGK----WGFEDFLKQGLVEYVDVNEE-------- 667
Query: 676 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735
ND + + ++ + DT TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 668 -NDSLIS-VYERDITPDT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 724
Query: 736 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 795
N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VAI YSGY+ ED++
Sbjct: 725 AIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDAL 784
Query: 796 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 855
++N+SSIDRGF R F + +K + G P R G + ++DDGLA
Sbjct: 785 VLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLA 844
Query: 856 PPGTRVSGEDVIIGKTTP-------ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 908
G RV + + K TP I+ Q S Y + ++ + E G +D+V+L
Sbjct: 845 GVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGY--KATPMTYKAPEPGYIDKVML 902
Query: 909 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 968
TT +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NP
Sbjct: 903 TTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNP 962
Query: 969 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1028
H PSRMT+G++IE + GKV G T F V++ S+ L + GY G + + +
Sbjct: 963 HGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTS 1022
Query: 1029 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1088
G TG L A IF+GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEME
Sbjct: 1023 GITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1082
Query: 1089 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 1148
RDC+IA+GAS L ERL SDA V VC CGL+ C C++ ++V++
Sbjct: 1083 RDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGYKGW------CNSCQSTREVVKMT 1136
Query: 1149 IPYACKLLFQELMAMAIAPRMLTKEDTK 1176
IPYA KLLFQEL++M I PR+ +++ K
Sbjct: 1137 IPYAAKLLFQELLSMNIVPRLALEDEFK 1164
Score = 306 (112.8 bits), Expect = 3.6e-211, Sum P(2) = 3.6e-211
Identities = 68/195 (34%), Positives = 113/195 (57%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q LDS++ F+ +++IV + + S P + +I +
Sbjct: 51 WQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVT----SDVEPWFYLKYLDIRV 106
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P+ T++D A++ P RLR+LTY A +YVD+ G++V ++ V I
Sbjct: 107 GAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYT------RGKQVVRRRN---VPI 157
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++P+MLRS+ C L +E ++ L ECP D GGYFI+ G+EKV++ QE++S N + V
Sbjct: 158 GRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV-- 215
Query: 209 KRQPNKYAYVAEVRS 223
+ +P K + A V S
Sbjct: 216 EAEPKKGLWQASVTS 230
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 1703 (604.5 bits), Expect = 4.4e-202, Sum P(2) = 4.4e-202
Identities = 393/1041 (37%), Positives = 570/1041 (54%)
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 207
IG++P+MLRS+ C L SE + ++ ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 148 IGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV- 206
Query: 208 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 267
+ K A V S + R T + + K S I +IPI
Sbjct: 207 -EADEKKGIVQASVTS--STHERKSKTYVITKNDKIYLKHNS-----------ISEDIPI 252
Query: 268 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGAT 325
+I+ +A G V+D +IL+ +C D+ +L + EEA ++ QQ AL Y+GKR T
Sbjct: 253 VIILKAAGIVSDLEILQLVCGS--DSNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKT 310
Query: 326 V---GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 382
+ G + +++ E + ++ H+ D +KA Y + R+++ + DD
Sbjct: 311 IRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDD 370
Query: 383 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKT 437
RD+ GNKRL+LAG L+ LF LF+K D +A + K + D L I +
Sbjct: 371 RDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNN 430
Query: 438 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 497
IT GL +++TGNW RAGV+ VL+RL+Y S L + R++S + K++ PR
Sbjct: 431 ITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 490
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 557
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT P+ + G E + A
Sbjct: 491 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCEPIFALDSAT 550
Query: 558 IPQATK--IFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 615
+ +++NG +G R P V V+ + + + + + I TD G
Sbjct: 551 LHVDGNFGVYLNGTLIGTTRFPVKFVHDFRHLRRVGKVSAFISIYTNTHHQAVHIATDGG 610
Query: 616 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 675
R RPL IVE + + + L +E D D + G
Sbjct: 611 RICRPLIIVENGKSKVTAEHLAKLINQEWSFD----DFLTHGLVEYLDVNEENDSLIALY 666
Query: 676 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735
+D+ +P TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 667 EDDITA---NP----GAIVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 719
Query: 736 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 795
N R+DTL Y + YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED++
Sbjct: 720 AIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDAL 779
Query: 796 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDG 853
++N++S+DRGF R R + KK ++ R D +N +H + L DG
Sbjct: 780 VLNKASLDRGFGRCQVVRKNTVQLKKYPNHTQDILAGMRVDENNKPIFQHQA---LGPDG 836
Query: 854 LAPPGTRVSGEDVIIGKTTPISQDEA-----QGQASRYTRRDHSISLRHSETGMVDQVLL 908
L G+R+ V K P + ++ Q Q + + R+ + E +DQV++
Sbjct: 837 LGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMM 896
Query: 909 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 968
+ + + +KV +R R P++GDKFSSRHGQKG G+ QED+P+ GI+PDII+NP
Sbjct: 897 SVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNP 956
Query: 969 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1028
H PSRMT+G++IE I GK G T F ++++SK L + G+ G + +Y+
Sbjct: 957 HGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLEDMSKILIEKGFSYSGKDMLYS 1016
Query: 1029 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1088
G TG L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEME
Sbjct: 1017 GITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1076
Query: 1089 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 1148
RDC+IA+GAS L ERL SDA+ V VC CGL+ NS+ C CK+ +++++
Sbjct: 1077 RDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGY-----NSW-CTTCKSSENVIKMT 1130
Query: 1149 IPYACKLLFQELMAMAIAPRM 1169
IPYA KLLFQEL++M IAPR+
Sbjct: 1131 IPYAAKLLFQELLSMNIAPRL 1151
Score = 275 (101.9 bits), Expect = 4.4e-202, Sum P(2) = 4.4e-202
Identities = 61/178 (34%), Positives = 104/178 (58%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q LDS++ F+ +++I+ ++ ++ + S +P + +I +
Sbjct: 42 WNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKII-KANELVL---SDVDPEFYVKYLDIRV 97
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
++ + L P RLR+LTYSAP+YVDV G ++ D I
Sbjct: 98 GHKSTSKPGVKEVILPPHECRLRDLTYSAPIYVDVEYT------RGRKIIRHNDLE---I 148
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 206
G++P+MLRS+ C L SE + ++ ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 149 GRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV 206
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 1615 (573.6 bits), Expect = 4.8e-194, Sum P(2) = 4.8e-194
Identities = 385/992 (38%), Positives = 541/992 (54%)
Query: 146 VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 205
V IG++PIMLRS+ C LY E + +L ECP D GGYFI+NG+EKV++ QE++S N +
Sbjct: 147 VEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 206
Query: 206 VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 265
V + K A V S + R T + K G Y++ I EI
Sbjct: 207 V--EADEKKGIVQASVTS--STHERKSKTYVI-------TKNGKI--YLKHNS--IAEEI 251
Query: 266 PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRG 323
PI IV +A G ++D +I++ +C + D+ ++ +LEE+ I QQ AL+YIG +
Sbjct: 252 PIAIVLKACGILSDLEIMQLVCGN--DSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKV 309
Query: 324 ATVGVTRDKRIKYAKEILQKEMLPH--VGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 381
T+ + ++ E + ++ H V DF E KA Y + R+++ + D
Sbjct: 310 KTMRRQKLTILQEGIEAIATTVIAHLTVEALDFRE--KALYIAMMTRRVVMAMYNPKMID 367
Query: 382 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAK 436
DRD+ GNKRL+LAG L+ LF LF+K D + + K + D L + +
Sbjct: 368 DRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSN 427
Query: 437 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 496
ITSGL +++TGNW RAGV+ VL+RL+Y S L + R++S + K++ PR
Sbjct: 428 NITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPR 487
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 556
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+ I A
Sbjct: 488 ALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSA 547
Query: 557 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGR 616
+ +++NG +G R P V V+ + + + + I TD GR
Sbjct: 548 SLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGR 607
Query: 617 CSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXX 676
RPL IV + +K + L E D D + G
Sbjct: 608 ICRPLIIVSDGQSRVKDIHLRKLLDGELDFD----DFLKLGLVEYLDVNEENDSYIALYE 663
Query: 677 NDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 736
D+V P + TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 664 KDIV-----P------SMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGA 712
Query: 737 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 796
N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED+++
Sbjct: 713 IAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALV 772
Query: 797 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGL 854
+N+SSIDRGF R R K+ ++ G R D + +H S L DGL
Sbjct: 773 LNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS---LGPDGL 829
Query: 855 APPGTRVSGEDVIIGKTTPISQDEAQG--QASRYTR-RDHSISLRHSETGMVDQVLLTTN 911
G +V + I K+ P + +A + T+ R+ + R E +DQV+++ +
Sbjct: 830 GEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVS 889
Query: 912 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 971
+ +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH
Sbjct: 890 DNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGF 949
Query: 972 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1031
PSRMT+G++IE I GK G T F ++++SK L G+ G + +Y+G T
Sbjct: 950 PSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009
Query: 1032 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1091
G L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069
Query: 1092 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1123
+IA+GAS L ERL SDA+ V VC+ CGL+
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLM 1101
Score = 1076 (383.8 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 230/496 (46%), Positives = 308/496 (62%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
E+ + TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+D
Sbjct: 663 EKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRID 722
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
TL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED++++N+SSIDRGF
Sbjct: 723 TLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGF 782
Query: 807 FRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 864
R R K+ ++ G R D + +H S L DGL G +V
Sbjct: 783 GRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS---LGPDGLGEVGMKVQSG 839
Query: 865 DVIIGKTTPISQDEAQG--QASRYTR-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 921
+ I K+ P + +A + T+ R+ + R E +DQV+++ + + +KV
Sbjct: 840 QIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVL 899
Query: 922 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 981
+R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH PSRMT+G++I
Sbjct: 900 LRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMI 959
Query: 982 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1041
E I GK G T F ++++SK L G+ G + +Y+G TG L A IF
Sbjct: 960 ELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFF 1019
Query: 1042 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1101
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L
Sbjct: 1020 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1079
Query: 1102 KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1161
ERL SDA+ V VC+ CGL+ + C CK+ +I+++ IPYA KLLFQEL+
Sbjct: 1080 LERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPYAAKLLFQELL 1133
Query: 1162 AMAIAPRMLTKEDTKQ 1177
+M IAPR L ED Q
Sbjct: 1134 SMNIAPR-LRLEDIFQ 1148
Score = 287 (106.1 bits), Expect = 4.8e-194, Sum P(2) = 4.8e-194
Identities = 67/178 (37%), Positives = 103/178 (57%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q LDSF+ F+ +++I+ + I S +P + +I +
Sbjct: 45 WHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLIL----SDVDPEFYLKYVDIRV 100
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
K + S + T P RLR++TYSAP+YVD+ G + +D V I
Sbjct: 101 GKKS-SSSTKDYLTP-PHECRLRDMTYSAPIYVDIEYT------RGRNIIMHKD---VEI 149
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 206
G++PIMLRS+ C LY E + +L ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 150 GRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV 207
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 1589 (564.4 bits), Expect = 2.7e-193, Sum P(2) = 2.7e-193
Identities = 367/928 (39%), Positives = 532/928 (57%)
Query: 264 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGK 321
+ PI I+F+A+G +D++I++ I + +M PSLEE Q Q AL YIG
Sbjct: 233 DAPIAIIFKAMGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQTQALRYIGN 289
Query: 322 RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 381
+ + + ++ A+E+L +L HV +F K Y ++ R++L A G D
Sbjct: 290 KVRRQRMWGGQ-MEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVIL-AQGDNKVD 347
Query: 382 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTIT 439
DRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT
Sbjct: 348 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQIT 407
Query: 440 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 499
+G+ +++TGNW R GV+QVL+RL++ S L + R++S + K++ PR L
Sbjct: 408 NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQ 467
Query: 500 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEIS 554
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 468 PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELS 527
Query: 555 PAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDY 614
P +F+NG +G+ RD + LV T +N V + ++ + + I +D
Sbjct: 528 ---YPTVFLVFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDG 584
Query: 615 GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 674
GR RP IV+ + +K + I L Q + H+ + +
Sbjct: 585 GRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVE-------------YLDVN 631
Query: 675 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
ND A L+ DT TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 632 EENDCNIA-LYEHMISKDT-THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM 689
Query: 735 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 794
G N + R+DTL Y+L YPQ+P+V T+ +E + F +LPAG NA VA+ YSGY+ ED+
Sbjct: 690 GTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDA 749
Query: 795 VIMNQSSIDRGFFRSLFF-------RSYRDE--EKKMGTLVKEDFGRPDRSNTMGMRHGS 845
+++N++S+DRGF R L + R Y ++ +K MG ++ + +P RH
Sbjct: 750 LVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPI------WRHSI 803
Query: 846 YDKLDDDGLAPPGT-RVSGEDVIIGKTTP-ISQDEAQGQAS--RYTRRDHSISLRHSETG 901
LD DG+ PG+ +V + V++ K+ P ++Q +G A + R+ +S + +
Sbjct: 804 ---LDADGICSPGSEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDS 860
Query: 902 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 961
+++V++++NA+ VK+ +R R P+IGDKFSSRHGQKG G+ QEDMP+ GI
Sbjct: 861 YIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGIC 920
Query: 962 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1021
PDII+NPH PSRMT+G+LIE + GK G+ T F V ++ + L + GY +
Sbjct: 921 PDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYQ 980
Query: 1022 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1081
G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGG
Sbjct: 981 GKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 1040
Query: 1082 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1141
LR GEMERDC+I +GAS L ERL SDA+ V VC CGL+ + C CK+
Sbjct: 1041 LRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSS 1094
Query: 1142 TDIVQVHIPYACKLLFQELMAMAIAPRM 1169
+ + IPYACKLLFQEL +M I PR+
Sbjct: 1095 CHVSSLRIPYACKLLFQELQSMNIIPRL 1122
Score = 306 (112.8 bits), Expect = 2.7e-193, Sum P(2) = 2.7e-193
Identities = 84/258 (32%), Positives = 138/258 (53%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + I S +P + IY+
Sbjct: 27 WKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + ++L ECP D GGYFI+ G EKV++ QE++S N + V +
Sbjct: 134 GRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQ 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R+ A V S E ++R + M V K G Y++ + + PI
Sbjct: 194 DRKGTVGASVTS--STHEKKSR--TNMIV--------KQGRF--YLKHNT--LSEDAPIA 237
Query: 269 IVFRALGFVADKDILEHI 286
I+F+A+G +D++I++ I
Sbjct: 238 IIFKAMGVESDQEIVQMI 255
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 1610 (571.8 bits), Expect = 1.7e-191, Sum P(2) = 1.7e-191
Identities = 356/918 (38%), Positives = 527/918 (57%)
Query: 264 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGK 321
+IPI+++F+ALG V+D++I I D ++ SL +A+ ++ QQ AL+Y+G
Sbjct: 240 DIPIVVIFKALGVVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQRALEYMGS 296
Query: 322 RGATV---GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 378
+ T + A+E+L +L HV +F KA Y ++ R++ L +
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 379 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAK 436
DDRD+YGNKRL+LAG LL +F LF+++ +++ K + K ++A
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAA 416
Query: 437 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 496
IT+GL+ ++++GNW RAGV+QVL+RL+Y S L + R+NS + K++ PR
Sbjct: 417 QITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPR 476
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS-- 554
L SQWGM+CP++TPEG+ACGLVKNLALM +IT P++ G E+ E+S
Sbjct: 477 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGN 536
Query: 555 PAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDY 614
P P +F+NG +G+ + + LV+ + + V V + + I+TD
Sbjct: 537 PINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDG 596
Query: 615 GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 674
GR RP IVE +R L+K+ + L + D D + G
Sbjct: 597 GRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD----DFLLDGLIEYLDVNEE------- 645
Query: 675 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
ND A E+ D TH EI P +LGVCA ++P+P HNQSPRNTYQ AMGKQAM
Sbjct: 646 --NDSFIA--WNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 701
Query: 735 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 794
G+ N + R+D+L Y L YP P+V ++ +E +F +LPAG NA VA+ YSGY+ ED+
Sbjct: 702 GMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 761
Query: 795 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 854
+I+N++SIDRG+ R L +++ + K+ + P + +D LD DG+
Sbjct: 762 LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGI 821
Query: 855 APPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 912
PG +V + ++I K P S + QGQ+++ IS + E +++V+++ NA
Sbjct: 822 VAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANA 881
Query: 913 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 972
+ +K+ +R RIP+IGDKFSSRHGQKG G+ QEDMP+ GI PD+I+NPH P
Sbjct: 882 EEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFP 941
Query: 973 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1032
SRMT+G+ +E + GK GK T F V++I L + G+ G + Y+G TG
Sbjct: 942 SRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITG 1001
Query: 1033 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1092
L A I+ GP YYQ+LKHMV DK+H+R RGP +LTRQP +GRSR+GGLR GEMERDC+
Sbjct: 1002 TPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCL 1061
Query: 1093 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1152
I++GAS + ERL SDA+ V VC CG +A + C C++ ++ ++ +PYA
Sbjct: 1062 ISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYA 1115
Query: 1153 CKLLFQELMAMAIAPRML 1170
CKLLFQEL +M + P+M+
Sbjct: 1116 CKLLFQELTSMNVVPKMI 1133
Score = 268 (99.4 bits), Expect = 1.7e-191, Sum P(2) = 1.7e-191
Identities = 61/174 (35%), Positives = 98/174 (56%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++IV + + S +P + ++ +
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVT----SGADPLFYLKYLDVRV 90
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
KP + + T P RLR+ TYSAP+ VD+ +G T+ + I
Sbjct: 91 GKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIE---YTRG------TQRIKRNNLLI 141
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 202
G++P+MLR S C L SE +L++L ECP D GGYF++ G EKV++ QE++S N
Sbjct: 142 GRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN 195
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
Identities = 433/1172 (36%), Positives = 639/1172 (54%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + +GLV+Q L SFD F+Q ++ I+ + I S NP + +I +
Sbjct: 29 WLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKIT----SDANPNFYLKYLDIRI 84
Query: 89 SKPMMTESDGETAT-LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF 147
KP E T + P+ RLR++TYSAP+ VD+ +G+ + V + +D +
Sbjct: 85 GKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIE---YTRGN--QRVFK-KD---LI 135
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 207
IG++PIMLRSS C L +E++L + ECPYD GGYF++ GSEKV++ QE++S N + V
Sbjct: 136 IGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMV- 194
Query: 208 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 267
R +K + S +E +++ TM KG S ++ + T ++P+
Sbjct: 195 -GRNSSKELQCEVLSSTSERKSKTYVTM---------KKGKYSVRHNQLT-----DDVPV 239
Query: 268 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV--IQNQQVALDYIGKR--- 322
I+F+A+G +D DI+ I ++ + + +LEE+ + QQ AL Y+ +
Sbjct: 240 SIIFKAMGVESDFDIVSTIGHE---EKYVSAFAQTLEESINAGVYTQQQALAYVTSKVKA 296
Query: 323 ----------GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
G +V V + A + L M+ H+ D KA Y G + RL+
Sbjct: 297 RKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQ 356
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
LG DDRD YGNKRL+LAG LL LF +F++ +++ + L
Sbjct: 357 TELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPLDIV 416
Query: 433 --IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 490
++ IT+ + +++TGNW R GV+QVL+RL+Y S L + R+NS +
Sbjct: 417 KHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTR 476
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 550
K++ PR L SQWGM+CP++TPEG+ACGLVKNLAL+ +IT S P+L L G E+
Sbjct: 477 KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDL 536
Query: 551 EEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKEL 608
+ + + P+ T IF+NG +G DPE +VK ++ V V R + + +
Sbjct: 537 HNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSV 596
Query: 609 RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXX 668
I +D GR RP IV+ ++ + + L++ + + D V G
Sbjct: 597 FISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMI----FEDFVDDGIVEYLDVNEM- 651
Query: 669 XXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 728
ND + A ++ E +T TH EI P +LGVCA +IP+P HNQSPRNTYQ A
Sbjct: 652 --------NDALIA-VYGREIGPET-THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCA 701
Query: 729 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 788
MGKQAMG N Q R+D++ Y+L YPQ+PLV ++ +E +F +LPAG N I+A+ YSG
Sbjct: 702 MGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSG 761
Query: 789 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 848
Y+ ED++++N++S+DRG+ R L ++ + KK + P +
Sbjct: 762 YDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKN 821
Query: 849 LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ----------GQASRYTR-RDHSISLRH 897
LD +G+ G R+ + II K P+ E+ G A R +D SI+ +
Sbjct: 822 LDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKT 881
Query: 898 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 957
++VLLT N D KV +R R P++GDKFSSRHGQKG G+ QEDMP+
Sbjct: 882 PTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFND 941
Query: 958 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1017
G+ PD+I+NPH PSRMT+G+L+E + GK G T F V ++ + L CG
Sbjct: 942 LGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEELAACG 1001
Query: 1018 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1077
Y G + + +G TG+ L+A I+ GP YYQ+LKHMV DK+H+R RGP LTRQP EGRS
Sbjct: 1002 YNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRS 1061
Query: 1078 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1137
R+GGLR GEMERDC+IA+GAS L ERL SD ++V VC CG+I C+
Sbjct: 1062 REGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVIGSKGW------CQK 1115
Query: 1138 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
C++ + + IPYACKLLFQEL +M I PR+
Sbjct: 1116 CRSSKSMANIKIPYACKLLFQELQSMNIVPRL 1147
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 1707 (606.0 bits), Expect = 9.6e-176, P = 9.6e-176
Identities = 408/1125 (36%), Positives = 607/1125 (53%)
Query: 70 RPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 129
R S +P F ++ + +P + + + P RL ++TY+AP++V++ +
Sbjct: 70 RITSTVDPSIYLRFKKVRVGEPSIINVN-TVENINPHMCRLADMTYAAPIFVNI--EYVH 126
Query: 130 KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 189
H G + +D V IG++PIMLRS C L+ E++L LGECP D GGYFII G+
Sbjct: 127 GSH-GNKAKSAKD--NVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGT 183
Query: 190 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 249
EKVL+ QE++S N + + ++ N A V M +S+ ++M
Sbjct: 184 EKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKT------VIQM---------- 227
Query: 250 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV- 308
+ I L +IPIIIV +A+G +D++I++ + +D + L PS+EE
Sbjct: 228 EKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMVG---RDPRFSASLLPSIEECVSE 284
Query: 309 -IQNQQVALDYIGKRGATVGV-TRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 366
+ Q+ ALDY+ + + T ++ A IL+ L HV D +K +Y G +
Sbjct: 285 GVNTQKQALDYLEAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVM 344
Query: 367 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT----RDVRAYVQKCVD 422
+ R++ L + A DD+D+ GNKRL+L+G L+ LF LF+ + ++V + K +
Sbjct: 345 LRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIR 404
Query: 423 NGKDVNLQFAIKAK--TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 480
+ Q K +I+ GL+ +L+TGN+ R G++QVL RL++ ++ +
Sbjct: 405 ASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFIT 464
Query: 481 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 540
+++ + K++ PR L SQWGM+CP +TPEG++CGLVKNLALM ++T P++
Sbjct: 465 KISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVA 524
Query: 541 FLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVG 598
+ G + E +S + P + + +NG +G H P+ + + V
Sbjct: 525 MCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVS 584
Query: 599 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 658
V + + + + +D GR RPL I +K +K+ + LQ D D + G
Sbjct: 585 VFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFD----DFIRDGL 640
Query: 659 XXXXXXXXXXXXXXXXXXND-LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 717
+D + E A ADT TH EI P ILGV A +IP+P H
Sbjct: 641 IEYLDVNEENNALIALYESDGTTELDEGAEAAKADT-THIEIEPFTILGVVAGLIPYPHH 699
Query: 718 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 777
NQSPRNTYQ AMGKQAMG N RMDTL Y+L YPQ+PL+TTR +E + + +L AG
Sbjct: 700 NQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 759
Query: 778 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 837
NA VA+ +SGY+ ED+++MN+SS+DRGF R + + +K + P R+
Sbjct: 760 NATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRT- 818
Query: 838 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA---SRYTRRDHSIS 894
G LDDDGLA PG + D+ I K P+ A S+Y
Sbjct: 819 --GPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFK 876
Query: 895 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 954
ET +VD+V L ++ G +K +R R P++GDKFSSRHGQKG G+ QED P
Sbjct: 877 GPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFP 936
Query: 955 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA-----HMGKE-GDATPFTDVTVDN 1008
++ GI PD+I+NPH PSRMT+G++IE + K H G G+ + D V+
Sbjct: 937 FSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHAD-KVET 995
Query: 1009 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1068
IS L + G+ G + +Y+G +G + A IF+GP YYQ+LKHMV DK+H+RG GP ++
Sbjct: 996 ISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMM 1055
Query: 1069 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1128
TRQP EG+S++GGLR GEMERDC+IA+GAS + ERL SD + V VC CGL+ N
Sbjct: 1056 TRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNY 1115
Query: 1129 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1172
K C CKN +I + +PYACKLLFQEL +M + PR+ LT+
Sbjct: 1116 KLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLTE 1160
Score = 292 (107.8 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 67/198 (33%), Positives = 111/198 (56%)
Query: 31 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 90
++ + + +GLV+Q LDSF+ FI + +IV ++ I S +P F ++ + +
Sbjct: 35 LVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRIT----STVDPSIYLRFKKVRVGE 90
Query: 91 PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGK 150
P + + + P RL ++TY+AP++V++ + H G + +D V IG+
Sbjct: 91 PSIINVN-TVENINPHMCRLADMTYAAPIFVNI--EYVHGSH-GNKAKSAKD--NVIIGR 144
Query: 151 VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 210
+PIMLRS C L+ E++L LGECP D GGYFII G+EKVL+ QE++S N + + +
Sbjct: 145 MPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDK 204
Query: 211 QPNKYAYVAEVRSMAESQ 228
+ N A V M +S+
Sbjct: 205 KGNINASVTSSTEMTKSK 222
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 1167 (415.9 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 262/660 (39%), Positives = 365/660 (55%)
Query: 517 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ--ATKIFVNGCWVGIH 574
CGLVKN ALM ++T + P+L G ++ ++ + A + +NG +GIH
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029
Query: 575 RDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 634
P+ V T + V + ++ + + + D GR RP+ IV+ QR + +
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089
Query: 635 DIIALQQRESPEDG--GWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYAD 692
I E +DG + D + +G ND A E A
Sbjct: 1090 HI------EDLKDGLRTFDDFIREGIIEYLDVNEE---------NDSFLA--WREAAIQP 1132
Query: 693 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 752
TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y+L
Sbjct: 1133 WTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLL 1192
Query: 753 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 812
+ Q+PL TR ++ L++ +LPAG NA VA+ YSGY+ ED+++MN++S+DRGF R +
Sbjct: 1193 VHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVL 1252
Query: 813 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 872
+ KK G + P ++ +R Y LD DG+A PG +++ K +
Sbjct: 1253 KKQVTSIKKHGNDTSDRIFPPTPND---LRQPKYGLLDSDGIAKPGELAQKGQILVNKYS 1309
Query: 873 PISQDEAQGQASRYTRRDHSISL---RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 929
P++ +A + S ++ +D+VLLT+ D +K+ +RS R P+
Sbjct: 1310 PLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPE 1369
Query: 930 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 989
+GDKFSSRHGQKG G+ QEDMP++ GI PDII+NPH PSRMTIG++IE + GK
Sbjct: 1370 LGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAG 1429
Query: 990 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1049
GK G T F V+NISK L G+ G + + +G TG L IF GP +YQ+L
Sbjct: 1430 VLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKL 1489
Query: 1050 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1109
KHMV DK+H+R RGP LTRQP EGR+R GGLR GEMERDC+I +GAS + ERL S
Sbjct: 1490 KHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISS 1549
Query: 1110 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
D + V+ C++CG + C+ CK+ DI + IPYACKLLFQEL AM I PR+
Sbjct: 1550 DRFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRL 1603
Score = 523 (189.2 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 125/382 (32%), Positives = 203/382 (53%)
Query: 146 VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 205
V IG +PIMLRSS C L + + + + LGECP D GGYFI+ G EKV++ E++S N +
Sbjct: 144 VHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKNRII 203
Query: 206 VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 265
+ +K A V S + SRT + Y++ +I
Sbjct: 204 I---EMDSKGLPSASVTSSTHERK-----------SRTGVTLKNEKLYLKHNT--FGEDI 247
Query: 266 PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV--IQNQQVALDYIGKR- 322
P+ IV + +G D+++ + + D D + + PSLEE + ALDY+G R
Sbjct: 248 PVAIVLKGMGVETDQEMAQLVGSD--DV-FLNAITPSLEECQKCGVHTAAQALDYLGSRI 304
Query: 323 ---GATVGVTRDK-RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 378
GV K + + A++IL +L HV + K Y +I R+++ + +
Sbjct: 305 KVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKS 364
Query: 379 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV---DNGKDVNLQFAIKA 435
DD+D+YGNKR++L+G L+ LF F+K +++ V + + + ++++L I+
Sbjct: 365 CLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRT 424
Query: 436 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 495
TIT+G +++++G W R+GVSQVL+RL+Y S + + R+ S + K+A P
Sbjct: 425 DTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGP 484
Query: 496 RQLHNSQWGMMCPAETPEGQAC 517
R L SQWGM+CP++TPEG+AC
Sbjct: 485 RSLQPSQWGMLCPSDTPEGEAC 506
Score = 301 (111.0 bits), Expect = 3.6e-148, Sum P(2) = 3.6e-148
Identities = 64/178 (35%), Positives = 106/178 (59%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + +GLV+Q +DSF+ FI M++IV + R ++++P F +I +
Sbjct: 40 WKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANE----RLTAENDPSYFVRFTDINV 95
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P TE + ++ L P+ RLR++TYSAP++V++ K ++ +D V I
Sbjct: 96 GSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNK------QIISKRD---VHI 146
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 206
G +PIMLRSS C L + + + + LGECP D GGYFI+ G EKV++ E++S N + +
Sbjct: 147 GNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIII 204
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 1620 (575.3 bits), Expect = 1.6e-166, P = 1.6e-166
Identities = 372/968 (38%), Positives = 545/968 (56%)
Query: 222 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR-----TEIPIIIVFRALGF 276
R + E+ + T+ + S T K + ++ Y+R +IPI I+F+A+G
Sbjct: 188 RIIVEADRK--GTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGV 245
Query: 277 VADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIG---KRGATVGVTRD 331
+D++I++ I + +M PSLEE Q Q AL YIG +R G +
Sbjct: 246 ESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKK 302
Query: 332 KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 391
+++ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL
Sbjct: 303 TKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGNKRL 361
Query: 392 DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATG 449
+LAG LL LF LF+K +++ + + + ++ IT+G+ +++TG
Sbjct: 362 ELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTG 421
Query: 450 NWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 509
NW R GV+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP+
Sbjct: 422 NWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPS 481
Query: 510 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKI 564
+TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S P +
Sbjct: 482 DTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELS---YPNVFLV 538
Query: 565 FVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 624
F+NG +G+ RD + LV T +N V + ++ + + I +D GR RP IV
Sbjct: 539 FLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIV 598
Query: 625 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARL 684
+KQ+ + + + L Q + D + +G ND A L
Sbjct: 599 KKQKPAVTNKHMEELAQGYR----NFEDFLHEGLVEYLDVNEE---------NDCNIA-L 644
Query: 685 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 744
+ DT TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R
Sbjct: 645 YEHTINKDT-THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNR 703
Query: 745 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 804
+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DR
Sbjct: 704 IDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDR 763
Query: 805 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 864
GF R L +++ + K+ + P ++ LD DG+ PG +V +
Sbjct: 764 GFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENK 823
Query: 865 DVIIGKTTP-ISQDEAQGQA--SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 921
V++ K+ P ++Q +G + + +D ++ + + +++V++++NA+ +K+
Sbjct: 824 QVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKML 883
Query: 922 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 981
+R R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LI
Sbjct: 884 LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLI 943
Query: 982 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1041
E + GK G+ T F V ++ + L + GY G + + +G TG L A I+
Sbjct: 944 ELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYF 1003
Query: 1042 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1101
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L
Sbjct: 1004 GPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLL 1063
Query: 1102 KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1161
ERL SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL
Sbjct: 1064 LERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQ 1117
Query: 1162 AMAIAPRM 1169
+M I PR+
Sbjct: 1118 SMNIIPRL 1125
Score = 766 (274.7 bits), Expect = 1.3e-73, P = 1.3e-73
Identities = 202/622 (32%), Positives = 321/622 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R+ A V S E ++R + M V K G Y+R + +IPI
Sbjct: 194 DRKGTVGASVTS--STHEKKSR--TNMVV--------KQGRF--YLRHNT--LSEDIPIA 237
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK--RGATV 326
I+F+A+G +D++I++ I + ++A + Q K R
Sbjct: 238 IIFKAMGVESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 297
Query: 327 GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 386
G + +++ A+E+L +L HV +F K Y ++ R++L A G DDRD+Y
Sbjct: 298 GGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYY 356
Query: 387 GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKY 444
GNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 357 GNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVN 416
Query: 445 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 504
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQWG
Sbjct: 417 AISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWG 476
Query: 505 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIP 559
M+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S P
Sbjct: 477 MLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELS---YP 533
Query: 560 QATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSR 619
+F+NG +G+ RD + LV T +N V + ++ + + I +D GR R
Sbjct: 534 NVFLVFLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCR 593
Query: 620 PLFIVEKQRLLIKKRDIIALQQ 641
P IV+KQ+ + + + L Q
Sbjct: 594 PYIIVKKQKPAVTNKHMEELAQ 615
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
Identities = 373/951 (39%), Positives = 540/951 (56%)
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 300
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 301 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 354
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 415 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 533 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 587
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562
Query: 588 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 647
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 648 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 707
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 708 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 767
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 768 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 827
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 828 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 882
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 883 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 943 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1002
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1123 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1172
+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+K
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1130
Score = 769 (275.8 bits), Expect = 6.0e-74, P = 6.0e-74
Identities = 200/623 (32%), Positives = 321/623 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R K A A V S + SRT+ Y+R + +IPI+
Sbjct: 194 DR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT--LSEDIPIV 237
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL---DYIGKRGAT 325
I+F+A+G +D++I++ I + ++A + Q + + ++
Sbjct: 238 IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 297
Query: 326 VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
G + +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+
Sbjct: 298 GGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDY 356
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLK 443
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 444 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 503
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQW
Sbjct: 417 NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 476
Query: 504 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVI 558
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 477 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---Y 533
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
P +F+NG +G+ RD + LV T +N V + ++ + + I +D GR
Sbjct: 534 PNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 619 RPLFIVEKQRLLIKKRDIIALQQ 641
RP IV+KQ+ + + + L Q
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQ 616
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
Identities = 373/951 (39%), Positives = 540/951 (56%)
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 300
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 301 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 354
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 415 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 533 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 587
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562
Query: 588 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 647
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 648 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 707
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 708 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 767
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 768 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 827
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 828 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 882
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 883 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 943 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1002
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1123 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1172
+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+K
Sbjct: 1086 LGYSGW------CHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1130
Score = 766 (274.7 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 199/623 (31%), Positives = 323/623 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R+ A V S E ++R + + K G Y+R + +IPI+
Sbjct: 194 DRKGTVGASVTS--STHEKKSR----------TNMAVKQGRF--YLRHNT--LSEDIPIV 237
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL---DYIGKRGAT 325
I+F+A+G +D++I++ I + ++A + Q + + ++
Sbjct: 238 IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 297
Query: 326 VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
G + +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+
Sbjct: 298 GGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDY 356
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLK 443
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 444 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 503
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQW
Sbjct: 417 NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 476
Query: 504 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVI 558
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 477 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---Y 533
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
P +F+NG +G+ RD + LV T +N V + ++ + + I +D GR
Sbjct: 534 PNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 619 RPLFIVEKQRLLIKKRDIIALQQ 641
RP IV+KQ+ + + + L Q
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQ 616
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
Identities = 373/951 (39%), Positives = 540/951 (56%)
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 300
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 301 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 354
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 415 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 533 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 587
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562
Query: 588 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 647
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 648 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 707
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 708 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 767
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 768 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 827
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 828 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 882
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 883 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 943 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1002
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1123 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1172
+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+K
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1130
Score = 766 (274.7 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 199/623 (31%), Positives = 323/623 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R+ A V S E ++R + + K G Y+R + +IPI+
Sbjct: 194 DRKGTVGASVTS--STHEKKSR----------TNMAVKQGRF--YLRHNT--LSEDIPIV 237
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL---DYIGKRGAT 325
I+F+A+G +D++I++ I + ++A + Q + + ++
Sbjct: 238 IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 297
Query: 326 VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
G + +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+
Sbjct: 298 GGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDY 356
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLK 443
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 444 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 503
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQW
Sbjct: 417 NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 476
Query: 504 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVI 558
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 477 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---Y 533
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
P +F+NG +G+ RD + LV T +N V + ++ + + I +D GR
Sbjct: 534 PNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 619 RPLFIVEKQRLLIKKRDIIALQQ 641
RP IV+KQ+ + + + L Q
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQ 616
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
Identities = 371/947 (39%), Positives = 537/947 (56%)
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 300
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 301 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 354
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 415 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 533 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 587
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRLM 562
Query: 588 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 647
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 648 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 707
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 708 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 767
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 768 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 827
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 828 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 882
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 883 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 943 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1002
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1123 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 768 (275.4 bits), Expect = 7.8e-74, P = 7.8e-74
Identities = 200/623 (32%), Positives = 321/623 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R K A A V S + SRT+ Y+R + +IPI+
Sbjct: 194 DR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT--LSEDIPIV 237
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL---DYIGKRGAT 325
I+F+A+G +D++I++ I + ++A + Q + + ++
Sbjct: 238 IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 297
Query: 326 VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
G + +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+
Sbjct: 298 GGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDY 356
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLK 443
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 444 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 503
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQW
Sbjct: 417 NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 476
Query: 504 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVI 558
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 477 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELS---Y 533
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
P +F+NG +G+ RD + LV T +N V + ++ + + I +D GR
Sbjct: 534 PNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 619 RPLFIVEKQRLLIKKRDIIALQQ 641
RP IV+KQ+ + + + L Q
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQ 616
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
Identities = 371/947 (39%), Positives = 537/947 (56%)
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 300
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 301 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 354
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 415 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 533 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 587
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRLM 562
Query: 588 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 647
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 648 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 707
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 708 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 767
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 768 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 827
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 828 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 882
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 883 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 943 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1002
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1123 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 768 (275.4 bits), Expect = 7.8e-74, P = 7.8e-74
Identities = 200/623 (32%), Positives = 321/623 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R K A A V S + SRT+ Y+R + +IPI+
Sbjct: 194 DR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT--LSEDIPIV 237
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL---DYIGKRGAT 325
I+F+A+G +D++I++ I + ++A + Q + + ++
Sbjct: 238 IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 297
Query: 326 VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
G + +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+
Sbjct: 298 GGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDY 356
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLK 443
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 444 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 503
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQW
Sbjct: 417 NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 476
Query: 504 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVI 558
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 477 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELS---Y 533
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
P +F+NG +G+ RD + LV T +N V + ++ + + I +D GR
Sbjct: 534 PNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 619 RPLFIVEKQRLLIKKRDIIALQQ 641
RP IV+KQ+ + + + L Q
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQ 616
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 996 (355.7 bits), Expect = 1.7e-165, Sum P(2) = 1.7e-165
Identities = 219/501 (43%), Positives = 297/501 (59%)
Query: 694 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGIYVTNYQFRMDTLAYVL 752
YTHCE+ S +LGV +++PF +H+ R YQS +QA+G TN R DTL+ L
Sbjct: 686 YTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQL 745
Query: 753 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 812
+YPQKPL T A E L L G NAIVA+ + GYNQEDS++MN++S++RG FRS
Sbjct: 746 FYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQI 805
Query: 813 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH---GSYDKLDDDGLAPPGTRVSGEDVIIG 869
RSY+ E + E + D G H G D L+DDG G +S D++IG
Sbjct: 806 RSYKAEVDAKDS---EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIG 862
Query: 870 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 929
+ T + DHSI L+H+E G+V +V+L++N +G F V +R VR P
Sbjct: 863 RCTE-------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPC 909
Query: 930 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK-V 988
+GDKFSS HGQKG +G Q++ P+T++GI PDI++NPHA PSR T GQL+E + K +
Sbjct: 910 LGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGI 969
Query: 989 AAHMGKEGD----------ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1038
A + KEG ATPF+ V I++ LH+ G+ G E +YNG +G + +M
Sbjct: 970 ACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSM 1029
Query: 1039 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1098
IF+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++FGEMERDC+IAHGAS
Sbjct: 1030 IFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1089
Query: 1099 HFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE------CRGCKNKTDIVQVHIPY 1151
L ERLF SD+ ++H+C C A + +S CR C + +V+V++PY
Sbjct: 1090 ANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPY 1149
Query: 1152 ACKLLFQELMAMAIAPRMLTK 1172
KLL QEL +M I TK
Sbjct: 1150 GAKLLCQELFSMGITLNFDTK 1170
Score = 636 (228.9 bits), Expect = 1.7e-165, Sum P(2) = 1.7e-165
Identities = 188/629 (29%), Positives = 305/629 (48%)
Query: 33 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 85
+++F++ GL+ QL+S++ FI++ +Q + ++ + P + +D F E
Sbjct: 40 TSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGE 99
Query: 86 IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----------GHDGE 135
+ + KP D E L P ARL+N+TYSA + V+V V K G D
Sbjct: 100 VTVEKPTFFSDDKELEFL-PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNY 158
Query: 136 EVTETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
+ D K + IG +P+M++S C + +++ + G+C +DQGGYF+I G+EKV
Sbjct: 159 VEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEKVF 217
Query: 194 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 253
IAQE+M T +++ P + RS +NR VR+ A+ +
Sbjct: 218 IAQEQMCTKRLWI--SNSP----WTVSFRS-ENKRNR----FIVRLSENEKAEDYKRREK 266
Query: 254 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE------EAF 307
+ T+ ++ TEIP+ ++F ALG +DK+ ++ I +D D + L S+ EAF
Sbjct: 267 V-LTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAF 325
Query: 308 VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 367
N AL Y+ ++ + T+ + E L + P G KKA + GY++
Sbjct: 326 RCGNN--ALTYVEQQ---IKSTKFPPAESVDECLHLYLFP--GLQSL--KKKARFLGYMV 376
Query: 368 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 427
LL G+R ++RD + NKR++LAG LL R+ R + +QK + D+
Sbjct: 377 KCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDL 436
Query: 428 N-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSP 485
++ + A IT+GL + +TG W R +GV L R TL LRR
Sbjct: 437 KPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQ 496
Query: 486 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 545
+ GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ S ++E L
Sbjct: 497 VLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFAC 555
Query: 546 GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRL 605
G E + + + K+ +NG WVG+ D E V ++ E+ + RD
Sbjct: 556 GMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDD 615
Query: 606 KELRIYTDYGRCSRPLFIVEK-QRLLIKK 633
E+RI+TD GR RPL +VE Q+L +K
Sbjct: 616 NEVRIFTDAGRLLRPLLVVENLQKLKQEK 644
Score = 41 (19.5 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 591 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 637
+ VN +V V ++ +K + T G+ + VEK+ L +KK+DI+
Sbjct: 132 IKVNVQVEVFKNTVVKSDKFKT--GQDN----YVEKKILDVKKQDIL 172
Score = 41 (19.5 bits), Expect = 6.5e-58, Sum P(2) = 6.5e-58
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 1086 EMERDCMIAHGASHFLKE 1103
E E DC A G LKE
Sbjct: 665 EEEEDCNTAWGIKQLLKE 682
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 355/937 (37%), Positives = 517/937 (55%)
Query: 264 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGK 321
+IPI+I+ +A+G DK+++ + D E + EEA + QQ ALD+IG
Sbjct: 317 DIPIVILLKAMGIHTDKEMM--LLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGS 374
Query: 322 RGATVGVTRDKRIKY-------AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 374
R + + R K++ Y A E + ++ H+ D KA Y + R+L+
Sbjct: 375 R---IKINR-KQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAK 430
Query: 375 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA-- 432
DDRD+ GNKRL+LAG LL LF LF+K D++ + K ++ V A
Sbjct: 431 NDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWS 490
Query: 433 ---IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 489
+ + IT G+ +++TGNW RAGV+ VL+RL+Y + L + R++S +
Sbjct: 491 VIGMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKT 550
Query: 490 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 549
K++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 551 RKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAED 610
Query: 550 FEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKE 607
+ + I P + I +NG + + R P+ + ++ V + + +
Sbjct: 611 IQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRA 670
Query: 608 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXX 667
+ + TD GR RPL IVE + +KK + L+ D D +A+G
Sbjct: 671 VHVATDDGRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFD----DFLAQGLVEYVDVNEE 726
Query: 668 XXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 727
ND + A ++ E+ DT TH EI P ILG A +IP+P HNQSPRNTYQ
Sbjct: 727 ---------NDSLIA-IY-EKDITDTTTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 775
Query: 728 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 787
AMGKQA+G +N R+D++ Y++ YPQKP+V +R +E + QLPAG NA VA+ YS
Sbjct: 776 AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNATVAVMSYS 835
Query: 788 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 847
GY+ ED++++N+ S+DRGF R FR Y K K+ P N +R +
Sbjct: 836 GYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDILSPPTYENDAPIR--KHA 893
Query: 848 KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS-----ISLRHSETGM 902
L+ DGLA G +V+ +V I K+TP Q + G R S ++ + +
Sbjct: 894 LLESDGLAAVGEQVNAGEVYINKSTP-DQSMSSGMPGSDAGRPISYNPTPMTYKLPDPAY 952
Query: 903 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 962
+D+V+++ + + +KV R R P++GDKFSSRHGQKG G+ Q DMP+T +GI P
Sbjct: 953 IDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINP 1012
Query: 963 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1022
DII+NPH PSRMT+G+++E + GK G+ G T F+ V+ +++ L G+ G
Sbjct: 1013 DIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGG 1072
Query: 1023 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1082
+ + +G TG L +F GP YYQ+LKHMV DK+HSR RGP LTRQP EGRSRDGGL
Sbjct: 1073 KDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGL 1132
Query: 1083 RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1142
R GEMERDC+IA+G S L ERL SD + V VCE CG + N C+ CK+
Sbjct: 1133 RLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNW------CQRCKSSR 1186
Query: 1143 DIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSK 1179
+V++ IPYA KLL QELM+M + R+ +++ ++K
Sbjct: 1187 SVVKMVIPYAAKLLIQELMSMNVTARLKLEDEFPETK 1223
Score = 734 (263.4 bits), Expect = 1.2e-69, P = 1.2e-69
Identities = 207/678 (30%), Positives = 330/678 (48%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DS++ ++ +++IV+ S I R + HN F +IYL
Sbjct: 104 WNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTI--RSDVDHN--FYIKFTDIYL 159
Query: 89 S------KPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 142
+P ++ E +T+ P RLR+ TY+AP+ VD I+ G + +
Sbjct: 160 GFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDF--EYIR----GRQRVRRKG 213
Query: 143 FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 202
V IG++P+MLRSS C L + +T L ECP D GGYFI+NG+EKV++ QE++S N
Sbjct: 214 ---VSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKN 270
Query: 203 HVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR 262
+ V + P K A V S S N S ++ +L + Y++ + +
Sbjct: 271 RIIV--ETDPKKEIVQASVTS---SSNERKSKSYI-ILKKDRL-------YVKHNV--LS 315
Query: 263 TEIPIIIVFRALGFVADKDILEHIC-YD--FQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
+IPI+I+ +A+G DK+++ + D +Q+ + F QQ ALD+I
Sbjct: 316 EDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFT---QQQALDWI 372
Query: 320 GKR---GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 376
G R R ++ A E + ++ H+ D KA Y + R+L+
Sbjct: 373 GSRIKINRKQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKND 432
Query: 377 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---- 432
DDRD+ GNKRL+LAG LL LF LF+K D++ + K ++ V A
Sbjct: 433 AALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVI 492
Query: 433 -IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 491
+ + IT G+ +++TGNW RAGV+ VL+RL+Y + L + R++S + K
Sbjct: 493 GMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRK 552
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 551
++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+ +
Sbjct: 553 VSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQ 612
Query: 552 EISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELR 609
+ I P + I +NG + + R P+ + ++ V + + + +
Sbjct: 613 TVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVH 672
Query: 610 IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXX 669
+ TD GR RPL IVE + +KK + L+ D D +A+G
Sbjct: 673 VATDDGRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFD----DFLAQGLVEYVDVNEEND 728
Query: 670 XXXXXXXNDLVQARLHPE 687
D+ H E
Sbjct: 729 SLIAIYEKDITDTTTHME 746
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 750 (269.1 bits), Expect = 1.5e-142, Sum P(2) = 1.5e-142
Identities = 152/371 (40%), Positives = 221/371 (59%)
Query: 814 SYRDEEKKMGTLVKEDFGRPDRSNT-------MGMRH-GSYDKLDDDGLAPPGTRVSGED 865
SY + K+ + K+ +G + SN M + Y LD DG+A G +
Sbjct: 1085 SYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQ 1144
Query: 866 VIIGKTTPIS-QDEAQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 922
+ + K +P + +D + G+ + + I + +D+++ T N++GL+ K+ +
Sbjct: 1145 LYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIM 1204
Query: 923 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 982
R R+P++GDKFSSRHGQKG VG+ QEDMP+T GI PD+I+NPH PSRMT+G+L+E
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query: 983 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1042
+ K A G+ + F+ + I++ L + G+ E +Y+G TG L IF+G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 1043 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1102
P YYQ+LKHMV DKIH+R RGP Q+LTRQP EGRS++GGLR GEMERDC+IA+G S+ L
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLL 1384
Query: 1103 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1162
ERL SD V++CE CG++ C CK + + +PYACKLLFQEL
Sbjct: 1385 ERLMLSSDVCNVYICEDCGMMGY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQT 1438
Query: 1163 MAIAPRMLTKE 1173
M + P+++ KE
Sbjct: 1439 MNVFPKIIVKE 1449
Score = 725 (260.3 bits), Expect = 1.5e-142, Sum P(2) = 1.5e-142
Identities = 183/521 (35%), Positives = 285/521 (54%)
Query: 330 RDKRIKYAKEILQ-------KEMLPHVGTGDFCETK-KAYYFGYIIHRLLLCALGRRAED 381
++K++K K+I++ + +L H+ + + KA +I R+L A + D
Sbjct: 522 KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEID 581
Query: 382 DRDHYGNKRLDLAGPLLGGLFRMLFRK--------LTRDVRAYVQ-----KCVDNGKDVN 428
D+D+YGNKRL+LAG L+ LF L+++ + + + Y+Q K G ++N
Sbjct: 582 DKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMN 641
Query: 429 LQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
+ + IT G++ +++TGNW ++GVSQVL+RL++ + + + RLN
Sbjct: 642 DNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP-ILEFL 542
S + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T + ++E L
Sbjct: 702 SQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEIL 761
Query: 543 EEWGTENFEEISPAVIPQATKIFV--NGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVV 600
G E+ + ++ I + FV NG +G+H+ P+ ++ + V +
Sbjct: 762 YTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIY 821
Query: 601 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXX 660
+ + I TD GR RPL I+E + + + I AL+ + DL+
Sbjct: 822 DNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTI----NFFDLLKSSVIE 877
Query: 661 XXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 720
N+L+ A L+ + T TH EI P ILGV A +IP+P+HNQS
Sbjct: 878 WIDVNEQ---------NNLLIA-LNESDISLST-THLEIDPLTILGVVAGLIPYPNHNQS 926
Query: 721 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 780
PRNTYQ AMGKQA+G N R DTL Y+L YPQKPLV ++ +E ++F +LPAG NAI
Sbjct: 927 PRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAI 986
Query: 781 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 821
VA+ + GY+ ED+++MN+SSIDRGF R + R + E KK
Sbjct: 987 VAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKK 1027
Score = 616 (221.9 bits), Expect = 5.0e-131, Sum P(2) = 5.0e-131
Identities = 169/536 (31%), Positives = 295/536 (55%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ AY + KGLV+Q ++S++ FI+ ++ I++ + + I+ + + +F +I +
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEH--FYVEFLDITV 300
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + E+ ET L P+ R R+LTYSAP+YVDV +K G + T++ V I
Sbjct: 301 GTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDV--EYVK----GNSII-TKN--NVEI 350
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++P+MLRS C L SE++L +LGECPYD GGYFI+ G+E+VL+ QE++S N + V
Sbjct: 351 GRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEM 410
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
+ N A + + AES++R V ++ K S +I +I +
Sbjct: 411 DIKHNICATITS--TTAESKSR---CAIVYKNNKLYLKHNS----------FIE-DIGVC 454
Query: 269 IVFRALGFVADKDILEHICY--DFQD---TQMMELLRPSLE---EAFVIQNQQVALDYIG 320
I+ RA+G+ +D++I + I ++ + + EL +++ +A + +++ +
Sbjct: 455 IILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLA 514
Query: 321 KRGATVGVTRDKRIKYAKEILQ-------KEMLPHVGTGDFCETK-KAYYFGYIIHRLLL 372
K ++K++K K+I++ + +L H+ + + KA +I R+L
Sbjct: 515 K--GFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLD 572
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK--------LTRDVRAYVQ-----K 419
A + DD+D+YGNKRL+LAG L+ LF L+++ + + + Y+Q K
Sbjct: 573 SANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSK 632
Query: 420 CVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 474
G ++N + + IT G++ +++TGNW ++GVSQVL+RL++ +
Sbjct: 633 LRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIA 692
Query: 475 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 530
+ + RLNS + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T
Sbjct: 693 CIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVT 748
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 750 (269.1 bits), Expect = 1.5e-142, Sum P(2) = 1.5e-142
Identities = 152/371 (40%), Positives = 221/371 (59%)
Query: 814 SYRDEEKKMGTLVKEDFGRPDRSNT-------MGMRH-GSYDKLDDDGLAPPGTRVSGED 865
SY + K+ + K+ +G + SN M + Y LD DG+A G +
Sbjct: 1085 SYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQ 1144
Query: 866 VIIGKTTPIS-QDEAQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 922
+ + K +P + +D + G+ + + I + +D+++ T N++GL+ K+ +
Sbjct: 1145 LYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIM 1204
Query: 923 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 982
R R+P++GDKFSSRHGQKG VG+ QEDMP+T GI PD+I+NPH PSRMT+G+L+E
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query: 983 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1042
+ K A G+ + F+ + I++ L + G+ E +Y+G TG L IF+G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 1043 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1102
P YYQ+LKHMV DKIH+R RGP Q+LTRQP EGRS++GGLR GEMERDC+IA+G S+ L
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLL 1384
Query: 1103 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1162
ERL SD V++CE CG++ C CK + + +PYACKLLFQEL
Sbjct: 1385 ERLMLSSDVCNVYICEDCGMMGY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQT 1438
Query: 1163 MAIAPRMLTKE 1173
M + P+++ KE
Sbjct: 1439 MNVFPKIIVKE 1449
Score = 725 (260.3 bits), Expect = 1.5e-142, Sum P(2) = 1.5e-142
Identities = 183/521 (35%), Positives = 285/521 (54%)
Query: 330 RDKRIKYAKEILQ-------KEMLPHVGTGDFCETK-KAYYFGYIIHRLLLCALGRRAED 381
++K++K K+I++ + +L H+ + + KA +I R+L A + D
Sbjct: 522 KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEID 581
Query: 382 DRDHYGNKRLDLAGPLLGGLFRMLFRK--------LTRDVRAYVQ-----KCVDNGKDVN 428
D+D+YGNKRL+LAG L+ LF L+++ + + + Y+Q K G ++N
Sbjct: 582 DKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMN 641
Query: 429 LQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
+ + IT G++ +++TGNW ++GVSQVL+RL++ + + + RLN
Sbjct: 642 DNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP-ILEFL 542
S + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T + ++E L
Sbjct: 702 SQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEIL 761
Query: 543 EEWGTENFEEISPAVIPQATKIFV--NGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVV 600
G E+ + ++ I + FV NG +G+H+ P+ ++ + V +
Sbjct: 762 YTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIY 821
Query: 601 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXX 660
+ + I TD GR RPL I+E + + + I AL+ + DL+
Sbjct: 822 DNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTI----NFFDLLKSSVIE 877
Query: 661 XXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 720
N+L+ A L+ + T TH EI P ILGV A +IP+P+HNQS
Sbjct: 878 WIDVNEQ---------NNLLIA-LNESDISLST-THLEIDPLTILGVVAGLIPYPNHNQS 926
Query: 721 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 780
PRNTYQ AMGKQA+G N R DTL Y+L YPQKPLV ++ +E ++F +LPAG NAI
Sbjct: 927 PRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAI 986
Query: 781 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 821
VA+ + GY+ ED+++MN+SSIDRGF R + R + E KK
Sbjct: 987 VAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKK 1027
Score = 616 (221.9 bits), Expect = 5.0e-131, Sum P(2) = 5.0e-131
Identities = 169/536 (31%), Positives = 295/536 (55%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ AY + KGLV+Q ++S++ FI+ ++ I++ + + I+ + + +F +I +
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEH--FYVEFLDITV 300
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + E+ ET L P+ R R+LTYSAP+YVDV +K G + T++ V I
Sbjct: 301 GTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDV--EYVK----GNSII-TKN--NVEI 350
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++P+MLRS C L SE++L +LGECPYD GGYFI+ G+E+VL+ QE++S N + V
Sbjct: 351 GRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEM 410
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
+ N A + + AES++R V ++ K S +I +I +
Sbjct: 411 DIKHNICATITS--TTAESKSR---CAIVYKNNKLYLKHNS----------FIE-DIGVC 454
Query: 269 IVFRALGFVADKDILEHICY--DFQD---TQMMELLRPSLE---EAFVIQNQQVALDYIG 320
I+ RA+G+ +D++I + I ++ + + EL +++ +A + +++ +
Sbjct: 455 IILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLA 514
Query: 321 KRGATVGVTRDKRIKYAKEILQ-------KEMLPHVGTGDFCETK-KAYYFGYIIHRLLL 372
K ++K++K K+I++ + +L H+ + + KA +I R+L
Sbjct: 515 K--GFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLD 572
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK--------LTRDVRAYVQ-----K 419
A + DD+D+YGNKRL+LAG L+ LF L+++ + + + Y+Q K
Sbjct: 573 SANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSK 632
Query: 420 CVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 474
G ++N + + IT G++ +++TGNW ++GVSQVL+RL++ +
Sbjct: 633 LRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIA 692
Query: 475 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 530
+ + RLNS + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T
Sbjct: 693 CIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVT 748
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 799 (286.3 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 190/502 (37%), Positives = 268/502 (53%)
Query: 686 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 745
P E TH E P+ + + A++ PF D+NQSPRN YQ M KQ MG + +Y FR
Sbjct: 642 PHEVIKGVTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRT 701
Query: 746 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 805
D Y + QKP+V T+ P G NA++A+ +GY+ ED++I+N+S+ +RG
Sbjct: 702 DNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERG 761
Query: 806 FFR-SLFFRSYRDEEKKMGTLVKED--FGRPDRSNTMGMRHGSYDK-LDDDGLAPPGTRV 861
F S++ Y D ++ + ++ FGRP NT+ DK +D DGL G +
Sbjct: 762 FGHGSVYKNEYIDLDQGLSRFEQKKTFFGRP---NTVV---DELDKFIDTDGLPFVGRLI 815
Query: 862 S-GEDVIIGKTTPISQDEAQGQASRYTRRDHS----ISLRHSETGMVDQVLLTTNADGLR 916
GE T I + + Y ++ + + + G T + +
Sbjct: 816 KPGEPYY----TYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGA------TRDPSKIN 865
Query: 917 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 976
+ V++R R P IGDKFSSRHGQKG + + + +MP+T G+ PD+I+NP+A PSRMT
Sbjct: 866 NICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMT 925
Query: 977 IGQLIECIMGKVAAHMGKEGDATPF----TDVTVDNISKALHKCGYQMRGFETMYNGHTG 1032
IG L+E + GK A GK DAT F + +D + L K G+ G E MY+G TG
Sbjct: 926 IGMLVEILAGKAGAIHGKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTG 985
Query: 1033 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1092
+ IF G YYQRL+HMV DK R G V LTRQP +GR GG+RFGEMERD +
Sbjct: 986 KEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSL 1045
Query: 1093 IAHGASHFLKERLFDQSDAYRVHVCEHCG-LIAIANLKKNS----FECRGCKNKTDIVQV 1147
+AHGAS L +RL SD ++ VC+ CG + I + K S EC+ CK+ I +
Sbjct: 1046 LAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATI 1105
Query: 1148 HIPYACKLLFQELMAMAIAPRM 1169
IPY L EL A+ I ++
Sbjct: 1106 SIPYVFTYLVAELAAVNITMKL 1127
Score = 356 (130.4 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 140/534 (26%), Positives = 241/534 (45%)
Query: 37 EEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS-DFAEIYLSKPMMTE 95
E K L++ +DSFD F + + ++ +S + +HN Q F ++ LS+P
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYF----EHNSTQYKIRFTDLKLSRPTRNI 59
Query: 96 SDGETATLFPKAARLRNLTYSAP------LYVDVTKRVIKKGHDGEEVT-ETQDFTKVF- 147
+ E L+P +R TY+AP LY +V + + + DG EV Q+ T F
Sbjct: 60 VEKEIK-LYPNESRETGTTYNAPFKGAIGLY-EVNE--MDEMDDGTEVDYNKQEPTHTFE 115
Query: 148 --IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH-V 204
+G++PIM++S YC L S + L E E +QGGYFI+NG+EKV+ NH V
Sbjct: 116 VDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPV 175
Query: 205 YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 264
+ +K N+ + + RP + L + G ++ +++ Y R E
Sbjct: 176 ALHRKAWTNRGPGYTK-NGITIRCVRPDRSSITNNLHYIN-DGQTTLRFL-----YRRQE 228
Query: 265 --IPIIIVFRALGFVADKDILEHICY-DFQDTQMMELLRPSLEEAFV--IQNQQVALDYI 319
+P ++ +AL +K+I E+I D ++T + + + SL E + I Q+ LDYI
Sbjct: 229 FFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYI 288
Query: 320 GKR--GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 377
G R T IK + + + + H+ + K +I +L G+
Sbjct: 289 GSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMIQKLYAMVGGK 344
Query: 378 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN--LQFAIKA 435
D+ D + + LAG + G + + + +++V K ++ K L A+K
Sbjct: 345 CGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALK- 403
Query: 436 KTITSGLK------YSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPI 486
K + K Y LATGN ++ + +G + ++L + +SH R ++
Sbjct: 404 KVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAF 463
Query: 487 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 540
K R+L WG CP TP+G CGL+ +L+ +TV +A P ++
Sbjct: 464 FATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ 517
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 780 (279.6 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 182/469 (38%), Positives = 250/469 (53%)
Query: 686 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 745
PEE + ++H E P+ IL + A++ PF D NQSPRN YQ MGKQ MG T R
Sbjct: 653 PEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRS 712
Query: 746 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 805
D Y L Q P+V + P G+NAIVA+ Y+GY+ +D++I+N+S+ +RG
Sbjct: 713 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERG 772
Query: 806 FFRSLFFRSYR---DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 862
F +++ + + ++ G + + FG + +KLD DGL G +V
Sbjct: 773 FGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWK----EKLDADGLPLIGVKVE 828
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT---TNADGLRFVK 919
D I+ D+ G+ T HS SE +++V L +N + +
Sbjct: 829 EGDPIVAY-----YDDTLGKTKVKTY--HS-----SEPAYIEEVKLLGDDSNEQEGQQIT 876
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
++ R R P IGDKFSSRHGQKG + Q DMP+T G+ PD+I+NPHA PSRMTIG
Sbjct: 877 IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGM 936
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
+E + GK A G D+TP+ D D + L K GY G E MY+G TG L
Sbjct: 937 FVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEEL 996
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I H
Sbjct: 997 RCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGH 1056
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLI-----AIANL-KKNSFECRGC 1138
G S L++RL + SD + VC CG I ++ + S CR C
Sbjct: 1057 GTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRC 1105
Score = 327 (120.2 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 117/459 (25%), Positives = 215/459 (46%)
Query: 86 IYLSKPMMTESDGETAT--LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 143
+ L+KP + +D + FP R R +TY + L ++VT V +D EEV+E ++
Sbjct: 84 VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSV----NDEEEVSEVRE- 138
Query: 144 TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 203
G++PIML+S+ C L + S L E E + GGYFI+NG EK++ NH
Sbjct: 139 ----AGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNH 194
Query: 204 -VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR 262
+ + + N+ A + S RP T +L + G + ++ ++
Sbjct: 195 PMAIIRPSFGNRGASYTKFGIQIRSV-RPDQTSQTNVLHYLN-DGNVTFRFSWRKNEFL- 251
Query: 263 TEIPIIIVFRALGFVADKDILEHIC-YDFQD---TQMMELLRPSLEEAFVIQNQQVALDY 318
+P++++ +AL D++I + I D ++ T +ELL + + + + +QQ L Y
Sbjct: 252 --VPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYK-TYNLYSQQETLAY 308
Query: 319 IGKRGATV-GVTRDKR-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 376
+G + V G + D I+ KE+L++ +L H+ K ++I +L G
Sbjct: 309 LGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNN----ADKFRMLLFMIRKLYSLVAG 364
Query: 377 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ------ 430
A D+ D ++ + L G L G + + + ++++ +Q ++ G +N
Sbjct: 365 DCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMT 424
Query: 431 --FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SP 485
F+ + I L+Y L+TGN + + +G + V ++ + +SH R ++
Sbjct: 425 RVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGS 484
Query: 486 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
E K R+L WG +CP TP+G CGL+ +L+
Sbjct: 485 FFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLS 523
Score = 47 (21.6 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 1143 DIVQVHIPYACKLLFQELMAMAIAPR 1168
D V IP+ K L EL AM I R
Sbjct: 1135 DTTTVAIPFVLKYLDSELSAMGIKMR 1160
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 830 (297.2 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 200/495 (40%), Positives = 268/495 (54%)
Query: 695 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 754
TH E+ P IL V A++IPF DHNQSPRN YQ MGKQ MG V NY+ R D Y+L+
Sbjct: 542 THQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHT 601
Query: 755 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 814
PQ PLV R ++ P G N++VA+ YSGY+ ED++I+N+SS +RGF +
Sbjct: 602 PQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGF-------A 654
Query: 815 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 871
Y K + R + G+R G +KLD DGL G+ + D
Sbjct: 655 YGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGD------ 708
Query: 872 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVK--VRVRSVRIP 928
P + T ++ ++ E G+VD + L +N G +F K + VR R P
Sbjct: 709 -PF-----YSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKKACITVRVPRNP 762
Query: 929 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 988
+GDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK
Sbjct: 763 TVGDKFASRHGQKGILSQLWPVEDMPFTENGMVPDILFNPHGFPSRMTIGMLIESMAGKS 822
Query: 989 AAHMGKEGDATPFTDVTVDNISK----ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1044
AA G DATPFT ++ K L GY G E MY+G +G L A IF+G
Sbjct: 823 AALHGAYYDATPFTFTEKNSALKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVV 882
Query: 1045 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1104
YYQRL+HMV DK R GP +T QP +GR+ +GG+RFGEMERD ++AHG S L +R
Sbjct: 883 YYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGEMERDALLAHGTSFLLHDR 942
Query: 1105 LFDQSDAYRVHVCEHCGLIAIANLKK---------NSFECRGCKNKTDIVQV-HIPYACK 1154
LF SD +VC CG + L++ + C C + D +Q+ +P+ +
Sbjct: 943 LFSCSDGCEAYVCTSCGSMLSPLLQRPPPSSVASSRRYSCMLC-GRMDTIQIIPVPHVFR 1001
Query: 1155 LLFQELMAMAIAPRM 1169
EL AM I R+
Sbjct: 1002 YFLAELAAMNIKLRL 1016
Score = 240 (89.5 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 104/404 (25%), Positives = 172/404 (42%)
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEK----MS 200
+G VPIM++S C LY S ++L + E + GGYFIING EKV LI +
Sbjct: 19 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAM 78
Query: 201 TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 260
T H + K R P Y + + + + + M G +I +
Sbjct: 79 TRHKW--KNRGPGFTEYGVVMHCVKDEHSA------INMNLHYLENGCVMVNFIFQKELF 130
Query: 261 IRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMM----ELLRPSLEEAFVIQNQQVA 315
+P+ +AL D I E + D + DT + E+LR ++ EA Q V
Sbjct: 131 F---LPLGFALKALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLR-AVAEAGCYTQQNV- 185
Query: 316 LDYIGKR-GATVGVTRDKRIKYAKE-ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 373
L+Y+GK + + + A + I K + H+ T+K Y + +L
Sbjct: 186 LEYLGKSFRVKLNLPEWYSNEQAADFIFNKCICIHLTD----RTEKFYLLCMMTRKLCAF 241
Query: 374 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-DVNLQFA 432
A G ED+ D N+ + AG L + + V+ ++K + ++N
Sbjct: 242 AKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSL 301
Query: 433 IKA----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPI 486
+KA +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 302 MKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGS 361
Query: 487 G-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
+ + R+L WG +CP +TP+G+ CGL+ ++ + I
Sbjct: 362 AFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI 405
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 253/717 (35%), Positives = 391/717 (54%)
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 300
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 209 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 263
Query: 301 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 354
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 264 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 323
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 324 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 382
Query: 415 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 383 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 442
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 443 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 502
Query: 533 SAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXX 590
PI++ G E+ + + P +F+NG +G+ RD + LV T
Sbjct: 503 MEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA 562
Query: 591 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 GYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFL 622
Query: 651 HDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 710
H+ + + ND A L+ DT TH EI P +LGVCA
Sbjct: 623 HESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGVCAG 667
Query: 711 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 770
+IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F
Sbjct: 668 LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEF 727
Query: 771 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 830
+LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+ +
Sbjct: 728 EKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKV 787
Query: 831 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASR 885
P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q +
Sbjct: 788 MGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQ 847
Query: 886 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 Y--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 902
Score = 766 (274.7 bits), Expect = 7.0e-78, Sum P(2) = 7.0e-78
Identities = 199/623 (31%), Positives = 323/623 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 24 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 79
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 80 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 130
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 131 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 190
Query: 209 KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 268
R+ A V S E ++R + + K G Y+R + +IPI+
Sbjct: 191 DRKGTVGASVTS--STHEKKSR----------TNMAVKQGRF--YLRHNT--LSEDIPIV 234
Query: 269 IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL---DYIGKRGAT 325
I+F+A+G +D++I++ I + ++A + Q + + ++
Sbjct: 235 IIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMW 294
Query: 326 VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
G + +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+
Sbjct: 295 GGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDY 353
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLK 443
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT+G+
Sbjct: 354 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 413
Query: 444 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 503
+++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L SQW
Sbjct: 414 NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 473
Query: 504 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVI 558
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 474 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS---Y 530
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
P +F+NG +G+ RD + LV T +N V + ++ + + I +D GR
Sbjct: 531 PNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 590
Query: 619 RPLFIVEKQRLLIKKRDIIALQQ 641
RP IV+KQ+ + + + L Q
Sbjct: 591 RPYIIVKKQKPAVTNKHMEELAQ 613
Score = 45 (20.9 bits), Expect = 7.0e-78, Sum P(2) = 7.0e-78
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 954 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
P+T+ G+ +I PH S Q C MGK A MG G
Sbjct: 658 PFTLLGVCAGLIPYPHHNQSPRNTYQ---CAMGKQA--MGTIG 695
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 820 (293.7 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 200/504 (39%), Positives = 268/504 (53%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSD 708
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D +K +K+ D S G++ G KLDDDGL G R+
Sbjct: 769 AHGSVYKSEFIDLSEK----IKQG----DDSLVFGVKPGDPRILQKLDDDGLPFIGARLQ 820
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VK 919
D ++ + + + Y +++ I VD + + +N G RF V
Sbjct: 821 YGDPYYSY---LNLNTGESFVTYYKSKENCI---------VDNIKVCSNDTGNGRFKCVC 868
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGM 928
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPFT + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFTFSEENSALEYFGELLKAAGYNFYGTERLYSGISGIEL 988
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAH 1048
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCDRSDTID 1108
Query: 1146 QVHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 249 (92.7 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 126/527 (23%), Positives = 217/527 (41%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESD-GE 99
L R ++SF+ ++ + V E + + + +S PM+ + + +
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERI---SLTIVDAVISPPMVPKGNICK 94
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
++P R R TY L D++ V I KG K F+G +PIM++S
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGISKG-----------IIKQFLGYIPIMVKS 143
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQP 212
C L+ K L E E + GGYFIING EKV+ + + + + +K R P
Sbjct: 144 KLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGP 203
Query: 213 NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVF 271
Y + + E + V M G +I R L ++ P+
Sbjct: 204 GYTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFAL 253
Query: 272 RALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR-GAT 325
+AL +D I + + F + ++LR +EE Q Q L+Y+G+R
Sbjct: 254 KALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQ--VLNYLGERFRVK 311
Query: 326 VGVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 384
+ + + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 312 LSLPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEDNPD 367
Query: 385 HYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 438
N+ + G L + ++ K+ D R+ N +++ F + +
Sbjct: 368 SLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMRIFNL-GTDL 426
Query: 439 TSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKP 495
T +Y LATGN G +G+ V ++L + LSH R ++ + +
Sbjct: 427 TKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTV 486
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
R+L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 487 RRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQCVYTASVPTL 533
Score = 44 (20.5 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 901 GMVDQVLLTTNADGLRFVKVRVRSVRIP 928
G VD+ L + A+ LR KV ++ RIP
Sbjct: 564 GWVDKELAPSIAESLRHFKV-LKEKRIP 590
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 802 (287.4 bits), Expect = 4.0e-103, Sum P(2) = 4.0e-103
Identities = 190/471 (40%), Positives = 254/471 (53%)
Query: 686 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 745
P+E TH E P+ +L + A++ PF D NQSPRN YQ MGKQ MG T ++R
Sbjct: 663 PKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRT 722
Query: 746 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 805
D Y L Q P+V + P G NA+VA+ Y+GY+ ED++I+N+S+ +RG
Sbjct: 723 DNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERG 782
Query: 806 FFRSLFFR--SYR-DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 862
F ++ S+ ++++ G V FG S R KLD DGL G ++
Sbjct: 783 FGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTP---RREWLQKLDADGLPFIGIKLE 839
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 919
D I+ DE+ GQ + H +E G VD+V L N G + +
Sbjct: 840 DGDPIVAY-----YDESTGQ--NFIETYHG-----TEPGFVDEVRLLGNDVGDSECQQIH 887
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
V++R R P IGDKFSSRHGQKG + DMP+T G+ PDII+NPHA PSRMTIG
Sbjct: 888 VKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGM 947
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
IE + GK A G D+TPF D + L K GY G E MY+G TG+ +
Sbjct: 948 FIESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEM 1007
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A I++G YYQRL+HMV DK R GP+ LTRQP +GR R GG+RFGEMERD +I H
Sbjct: 1008 KADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGH 1067
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCG-LIAI-ANLKKNSF------ECRGC 1138
G S +++RL + SD + VC CG +I+I + + N CR C
Sbjct: 1068 GTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSC 1118
Score = 279 (103.3 bits), Expect = 4.0e-103, Sum P(2) = 4.0e-103
Identities = 118/465 (25%), Positives = 205/465 (44%)
Query: 85 EIYLSKPMMTESDGETAT--LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 142
E+ ++KPM++ + + ++P AR R TY + L + + V + G +E ++
Sbjct: 81 EVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSV----NGGPRQSEMRE 136
Query: 143 FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 202
+G +PIM+RS+ C L S +L E + GGYFI+NG EK++ N
Sbjct: 137 -----VGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRN 191
Query: 203 HVYV-----FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 257
H F R + Y +R + Q+ +T+ L+ G + ++
Sbjct: 192 HPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTL--HYLNN----GVTMFRFHWRK 245
Query: 258 LPYIRTEIPIIIVFRALGFVADKDILEHIC-YDFQDTQMMELLRPSLE--EAFVIQNQQV 314
Y+ IP +++ +AL +DK+I E I D +T + + + L +++ + +Q
Sbjct: 246 NEYL---IPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTE 302
Query: 315 ALDYIGKRGATV-GVTRDKR-IKYAKEILQKEMLPHVGTGDFCETKKAY-YFGYIIHRLL 371
L Y+G + V GV D ++ + +LQK +L H+ E K + ++I +L
Sbjct: 303 TLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLR-----EAKDKFRLLLFMIRKLY 357
Query: 372 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN---GKDVN 428
G D+ D ++ + L G L G + + +RA + V G D +
Sbjct: 358 ALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFS 417
Query: 429 LQ------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLR 480
+ F+ I + L+Y L+TGN + G + V +L + LSH R
Sbjct: 418 DRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFR 477
Query: 481 RLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
++ E K R+L WG MCP TP+G CGL+ +LA
Sbjct: 478 MVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLA 522
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 764 (274.0 bits), Expect = 1.6e-102, Sum P(3) = 1.6e-102
Identities = 173/450 (38%), Positives = 240/450 (53%)
Query: 686 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 745
P + TH E P+ IL + A++ PF D+NQSPRN YQ M KQ MG T +R
Sbjct: 687 PSDLVKGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRT 746
Query: 746 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 805
D Y L Q P+V P G NA+VAI Y+GY+ +D++I+N+SS +RG
Sbjct: 747 DNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERG 806
Query: 806 FFRSLFFRS--YRDEEK-----KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 858
F +++ + +EK K V++ FG S + LD+DG G
Sbjct: 807 FGYGTVYKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRAT---LDEDGFPHIG 863
Query: 859 TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT---TNADGL 915
+ E I+ + D H + + SE +D + + T +
Sbjct: 864 AEIK-EGSIVAAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPA 922
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+ + V+ R R P IGDKFSSRHGQKG + DMP++ GI PD+I+NPHA PSRM
Sbjct: 923 QAISVKYRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRM 982
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFT---DVTV-DNISKALHKCGYQMRGFETMYNGHT 1031
TI Q+IE + GK A G D TPF + T D + L + GY G E +Y+G T
Sbjct: 983 TIAQMIESMAGKAGALHGHPQDCTPFQFSEEYTATDYFGEQLRRAGYNYYGNEPLYSGIT 1042
Query: 1032 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1091
G+ A IF+G +YQRL+HMV+DK R GPV LT QP +GR++ GG+R GEMERD
Sbjct: 1043 GKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERDS 1102
Query: 1092 MIAHGASHFLKERLFDQSDAYRVHVCEHCG 1121
+IAHGA++ L++RL + SD+ R +C CG
Sbjct: 1103 LIAHGAAYILQDRLMNCSDSQRAWICRDCG 1132
Score = 234 (87.4 bits), Expect = 1.6e-102, Sum P(3) = 1.6e-102
Identities = 107/409 (26%), Positives = 189/409 (46%)
Query: 33 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR-PESQHNPGQQS---DFAEIYL 88
+A FE+ G++ L D + + E+V+ + + R E + P + E++L
Sbjct: 48 NALFEKGGIIEAGLK--DIGTRTFLDEVVETAEQKQQRLAEGRRAPRRNKLHVRIKEVFL 105
Query: 89 SKPMMTESDGETA---TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTK 145
KP + ++ TA ++P R R+ TY L + RV G E+V E
Sbjct: 106 EKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRV-NNGDWTEQVRE------ 158
Query: 146 VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH-V 204
+G+VPIMLR++ C L + + +L + E + GGYFI+NG+EK++ N+ +
Sbjct: 159 --LGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIVGRRNYPM 216
Query: 205 YVFKKRQPNK-YAYVA---EVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 260
+ + N+ +AY ++RS+ RP T +L + G + ++ Y
Sbjct: 217 AIVRNTFTNRGHAYSKFGIQIRSV-----RPDQTSQTNVLHYLN-DGNVTFRFSWRKNEY 270
Query: 261 IRTEIPIIIVFRALGFVADKDILEHICYDFQD--------TQMMELLRPSLEEAFVIQNQ 312
I IP++++ +AL D++I E I T +ELL + + A+ + ++
Sbjct: 271 I---IPVVMILKALVETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYK-AYKLHSR 326
Query: 313 QVALDYIGKRGATV-GVTRDKRIKYA-KEILQKEMLPHVGTGDFCETK---KAYYFGYII 367
+IG++ V GV D + A E L+K +LPH+G + ET+ K ++I
Sbjct: 327 SECRAFIGEKFKPVLGVPADTPNEEAGTEFLRKVVLPHLGNQNVTETQDYDKFKMLMFMI 386
Query: 368 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 416
+L G A D+ D N+ + L G L G L + +L VR++
Sbjct: 387 RKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLK---ERLDEWVRSF 432
Score = 130 (50.8 bits), Expect = 1.6e-102, Sum P(3) = 1.6e-102
Identities = 51/224 (22%), Positives = 94/224 (41%)
Query: 365 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR-------MLFRKLTRDV--RA 415
++I +L G A D+ D N+ + L G L G L + F + RD R
Sbjct: 384 FMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKERLDEWVRSFGPILRDWSNRN 443
Query: 416 YVQKCVDNG--KD-VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRL 470
+ + D +D V+ + I ++Y L+TGN + +G + + ++
Sbjct: 444 HGARFTDPAFERDFVSKVIRRSNENIGGAMEYFLSTGNLVSPTGLDLQQTSGYTVMAEKI 503
Query: 471 TYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
+ +SH R ++ + K R+L WG +CP TP+G CGL+ +LA +
Sbjct: 504 NFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLV 563
Query: 530 TVGSAAYPIL-EFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 572
L + L + G N +S + ++ + ++G +G
Sbjct: 564 ATSDTDVSHLPKLLVQLGVRNESSVS---LDESVTVQLDGRIIG 604
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 775 (277.9 bits), Expect = 6.8e-102, Sum P(3) = 6.8e-102
Identities = 180/449 (40%), Positives = 241/449 (53%)
Query: 686 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 745
P+E + +TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG R
Sbjct: 678 PQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRS 737
Query: 746 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 805
D Y L Q P+V + P G NA+VA+ Y+GY+ +D++I+N+S+ +RG
Sbjct: 738 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERG 797
Query: 806 FFRSLFFRSYRDE---EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 862
F +++ + + + G + + FG N + +KLD+DGL GT V
Sbjct: 798 FGYGTMYKTEKVDLALNRNRGDPITQHFGF---GNDEWPKEW-LEKLDEDGLPYIGTYVE 853
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFV 918
D I D+ + T HS SE +++V L + L+ V
Sbjct: 854 EGDPICAYF-----DDTLNKTKIKTY--HS-----SEPAYIEEVNLIGDESNKFQELQTV 901
Query: 919 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 978
++ R R PQIGDKFSSRHGQKG + DMP++ GI PDII+NPHA PSRMTIG
Sbjct: 902 SIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIG 961
Query: 979 QLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1034
+E + GK A G D+TP+ D D + L K GY G E MY+G TG
Sbjct: 962 MFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEE 1021
Query: 1035 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1094
L A I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I
Sbjct: 1022 LRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIG 1081
Query: 1095 HGASHFLKERLFDQSDAYRVHVCEHCGLI 1123
HG S L++RL + SD + VC CG I
Sbjct: 1082 HGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
Score = 300 (110.7 bits), Expect = 6.8e-102, Sum P(3) = 6.8e-102
Identities = 111/465 (23%), Positives = 219/465 (47%)
Query: 85 EIYLSKPMMTE--SDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 142
++ ++KPM + S ++P +R R +Y L + + K + G E + E +D
Sbjct: 101 QVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKL-KWSVNNGE--ENLFEVRD 157
Query: 143 FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 202
G +P+ML+S+ C L + S +L + E + GGYFI+NG EK++ N
Sbjct: 158 -----CGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRN 212
Query: 203 H-VYVFKKRQPNKYA----YVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 257
H + + + N+ A Y ++RS+ RP T +L + G + ++
Sbjct: 213 HPMAIIRPSFANRGASYSHYGIQIRSV-----RPDQTSQTNVLHYLN-DGQVTFRFSWRK 266
Query: 258 LPYIRTEIPIIIVFRALGFVADKDILEHIC-YDFQD---TQMMELLRPSLEEAFV-IQNQ 312
Y+ +P++++ +AL +D++I + I D +D T +ELL ++ + +QN+
Sbjct: 267 NEYL---VPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNR 323
Query: 313 QVALDYIGKRGATV-GVTRDKR-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 370
L Y+G + V + D+ ++ +E+L + +L H+G D + K ++I +L
Sbjct: 324 TQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGK-DGSQDKFRMLL-FMIRKL 381
Query: 371 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 430
G + D+ D ++ + L G L G + + + +++ A V+ ++ G +N +
Sbjct: 382 YSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFK 441
Query: 431 ---FAIKA-----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLR 480
+ + + I S ++Y L+TGN + + +G + V ++ + +SH R
Sbjct: 442 DKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR 501
Query: 481 RLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
++ + K R+L WG +CP TP+G CGL+ + A
Sbjct: 502 MVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 546
Score = 42 (19.8 bits), Expect = 6.8e-102, Sum P(3) = 6.8e-102
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 1147 VHIPYACKLLFQELMAMAIAPR 1168
V IP+ K L EL AM I R
Sbjct: 1176 VAIPFVLKYLDSELSAMGIRLR 1197
Score = 38 (18.4 bits), Expect = 2.2e-74, Sum P(3) = 2.2e-74
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 335 KYAKEILQKEMLPHVGT 351
K A +LQ+ + PH+G+
Sbjct: 32 KSAFPLLQEAVQPHIGS 48
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 766 (274.7 bits), Expect = 8.4e-102, Sum P(3) = 8.4e-102
Identities = 175/447 (39%), Positives = 239/447 (53%)
Query: 684 LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 743
L PEEA H E+HPS + ++IPFPDHNQSPRN YQ MGKQ MG V +
Sbjct: 625 LDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHS 684
Query: 744 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 803
R D Y L +PQ+P++ A E + P G NA VA+ Y+GY+ ED++ +N++S
Sbjct: 685 RADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQ 744
Query: 804 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 863
RGF + R LV E R ++ + DGL PG R
Sbjct: 745 RGFAHGTVIKVERIN------LVTE---RERKTIFYRNPREEIKTVGPDGLPIPGRRYFL 795
Query: 864 EDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 923
++V T + + + Y + +R E G D G + ++ R
Sbjct: 796 DEVYY-VTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDS--------GAKHALIQWR 846
Query: 924 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 983
R P IGDKF+SRHGQKG + E +P++ G+ PDII NPH PSRMTIG +IE
Sbjct: 847 IERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIES 906
Query: 984 IMGKVAAHMGKEGDATPFT---DVT-VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1039
+ GK AA G+ DA+PF D T +++ + L K GY G ET Y+G GR++ I
Sbjct: 907 MAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQI 966
Query: 1040 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1099
F G YYQRL+HM+ DK R GP+ +T QP +GR + GG+RFGEMERD +IAHG S
Sbjct: 967 FFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSF 1026
Query: 1100 FLKERLFDQSDAYRVHVCEHCG-LIAI 1125
L++RL + SD + C CG L+++
Sbjct: 1027 VLQDRLLNCSDRDVAYACRRCGSLLSV 1053
Score = 299 (110.3 bits), Expect = 8.4e-102, Sum P(3) = 8.4e-102
Identities = 141/559 (25%), Positives = 238/559 (42%)
Query: 46 LDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM---TESDGETAT 102
+DSFD + Q ++ E + ++ F L KP + + +T
Sbjct: 10 VDSFDFLVSKGCQ-FAAQAVPAE-KFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLP 67
Query: 103 LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL 162
L P R R LTY+ L V + V +G + D ++ +GKVPIMLRS C L
Sbjct: 68 LLPAECRQRGLTYAGNLKVGIDVHV-----NGSRL----DIIEIILGKVPIMLRSEGCHL 118
Query: 163 YQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEKMSTNHVYVFKKRQPNKYAYVA 219
S K+L GE P ++GGYFI+NGSEKV LIA + + + +K K +
Sbjct: 119 RGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFP--IAIIRKTFKEKGKLFS 176
Query: 220 EVRSMAES--QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFV 277
E M S +N M + L + + + Q+ R + Y+ P++ + +AL
Sbjct: 177 EFGVMMRSVKENHTAVMMTLHYLDTGTMQ--LALQF-RREIFYV----PLMYIVKALTDK 229
Query: 278 ADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR-- 330
D I F + ++ +L EE I NQ+ A+ IG R R
Sbjct: 230 NDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEE--ILNQEAAIRAIGSRFRVAVSDRVA 287
Query: 331 --DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGN 388
+ ++ + I+++ +L H+ + + +K + Y+ +L+ G A + D+
Sbjct: 288 PWEDDLEAGRFIIRECVLIHLDSDE----EKFHTLAYMTQKLIALVKGECAPETPDNPQF 343
Query: 389 KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAK------TITS 440
+ ++G +L + R + VR ++ + + KD L A +KA IT
Sbjct: 344 QEASVSGHILLLILRERMENIIGMVRRKLEY-MSSRKDFILTSAAILKALGNHTGGEITR 402
Query: 441 GLKYSLATGNWGQ--ANAAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQ 497
G+ Y LATGN A +G S + R+ +SH R ++ E + R+
Sbjct: 403 GMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRK 462
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG-SAAYPILEFLEEWGTENFEEISPA 556
L WG +CP TP+G CGL+ ++ I S + L E G + + A
Sbjct: 463 LRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTV--A 520
Query: 557 VIPQATKIF---VNGCWVG 572
+ P +++ +NG ++G
Sbjct: 521 LAPPGEELYPVLMNGRFLG 539
Score = 46 (21.3 bits), Expect = 8.4e-102, Sum P(3) = 8.4e-102
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 1135 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 1176
CR C + + +P + L EL AM + ++ + +K
Sbjct: 1082 CRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSK 1123
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 804 (288.1 bits), Expect = 4.4e-101, Sum P(2) = 4.4e-101
Identities = 199/505 (39%), Positives = 267/505 (52%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + ++ R D
Sbjct: 686 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSD 745
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 746 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGF 805
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D +K +K+ D S G+R G KLDDDGL G ++
Sbjct: 806 AHGSVYKSEFIDLSEK----IKQG----DDSLVFGVRPGDPRVAQKLDDDGLPFVGAQLQ 857
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VK 919
G D + T + + E +VD + + N G RF V
Sbjct: 858 -----YG-------DPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVC 905
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 906 ITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGM 965
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 966 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLEL 1025
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 1026 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1085
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD HVC CG + L+K + C C N++D +
Sbjct: 1086 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYSCSLC-NRSDTI 1144
Query: 1146 Q-VHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 1145 DTVSVPYVFRYFVAELAAMNIKVKL 1169
Score = 257 (95.5 bits), Expect = 4.4e-101, Sum P(2) = 4.4e-101
Identities = 136/526 (25%), Positives = 216/526 (41%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTE-SDGE 99
L R ++SF+ ++ + V E + + D A +S P + + S +
Sbjct: 74 LTRAHVESFNYAVREGLSHAVQAIPPFEFTFKDERISLTIVDAA---ISPPTVPKGSICK 130
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
++P R R TY L D++ V I KG K F+G VPIM++S
Sbjct: 131 ELNIYPAECRGRRSTYRGRLTADISWAVNGISKG-----------VIKQFLGYVPIMVKS 179
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQP 212
C LY S + L E E + GGYFIING EKV+ + + + V +K R P
Sbjct: 180 KLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGP 239
Query: 213 NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVF 271
YV V + M + L G +I R L ++ P+
Sbjct: 240 GYTQYVG-VSMHCVREEHSAVNMNLHYLEN----GTVMLNFIYRKELFFL----PLGFAL 290
Query: 272 RALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGKR-GAT 325
+AL +D I + + +D + ++LR +EE Q Q L+Y+G+R
Sbjct: 291 KALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCATQKQ--VLNYLGERFRVK 348
Query: 326 VGVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 384
V + + A E L E + H+ + T+K Y + +L A G E++ D
Sbjct: 349 VNLPDWYPNEQAAEFLFNECICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEENPD 404
Query: 385 HYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI----T 439
N+ + G L L L L L A +K +N + +K + T
Sbjct: 405 SLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSLNTENLMKILNLGIDLT 464
Query: 440 SGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKPR 496
+Y LATGN G +G+ V ++L + LSH R ++ + + R
Sbjct: 465 KPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 524
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
+L WG +CP TP+G+ CGL+ +L A +T V +A+ P L
Sbjct: 525 RLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQFVYTASIPAL 570
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 797 (285.6 bits), Expect = 4.6e-101, Sum P(3) = 4.6e-101
Identities = 194/490 (39%), Positives = 258/490 (52%)
Query: 701 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 760
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 761 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEE 819
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 820 KKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
+ E F + D S G++ G KLD+DGL G ++ D G ++
Sbjct: 781 ------LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNL 831
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDK 933
+ +G Y +++ + VD + + +N G + V V VR R P IGDK
Sbjct: 832 NTGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDK 882
Query: 934 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 993
F+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942
Query: 994 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1049
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL
Sbjct: 943 LCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRL 1002
Query: 1050 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1109
+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ S
Sbjct: 1003 RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062
Query: 1110 DAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQVHIPYACKLLFQE 1159
D HVC CG + L+K + C C I V +PY + E
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 1160 LMAMAIAPRM 1169
L AM I ++
Sbjct: 1123 LAAMNIKVKL 1132
Score = 166 (63.5 bits), Expect = 4.6e-101, Sum P(3) = 4.6e-101
Identities = 73/294 (24%), Positives = 126/294 (42%)
Query: 265 IPIIIVFRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
+P+ +AL +D I + + F + ++LR +EE Q Q LDY+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQ--VLDYL 304
Query: 320 GKRGATVGVTRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 377
G+R D + A+ + + + H+ + T K Y + +L A G
Sbjct: 305 GERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSN----TDKFYLLCLMTRKLFALARGE 360
Query: 378 RAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQF 431
ED+ D N+ + G L + +L K+ D RA N +++ F
Sbjct: 361 CMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIF 420
Query: 432 AIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-R 488
++ + +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 421 SMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 479
Query: 489 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
+ + R+L WG +CP TP+G CGL+ +L A+ +T V +A+ P L
Sbjct: 480 KMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
Score = 128 (50.1 bits), Expect = 4.6e-101, Sum P(3) = 4.6e-101
Identities = 46/156 (29%), Positives = 67/156 (42%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESD-GE 99
L R +DSF+ + + V E + + D A +S P + + +
Sbjct: 38 LTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAA---ISPPAVPKGTICK 94
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
++P R R TY L D++ V + KG K F+G VPIM++S
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKG-----------IIKQFLGXVPIMVKS 143
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
C LY + L E E + GGYFIING EKV+
Sbjct: 144 KLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 901 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 941
G VD+ L AD LR KV +R R + H +K
Sbjct: 564 GWVDKELAPEVADTLRRFKV-LRERRCSSLDGGGPDSHDRK 603
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 797 (285.6 bits), Expect = 4.6e-101, Sum P(3) = 4.6e-101
Identities = 194/490 (39%), Positives = 258/490 (52%)
Query: 701 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 760
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 761 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEE 819
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 820 KKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
+ E F + D S G++ G KLD+DGL G ++ D G ++
Sbjct: 781 ------LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNL 831
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDK 933
+ +G Y +++ + VD + + +N G + V V VR R P IGDK
Sbjct: 832 NTGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDK 882
Query: 934 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 993
F+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942
Query: 994 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1049
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL
Sbjct: 943 LCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRL 1002
Query: 1050 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1109
+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ S
Sbjct: 1003 RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062
Query: 1110 DAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQVHIPYACKLLFQE 1159
D HVC CG + L+K + C C I V +PY + E
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 1160 LMAMAIAPRM 1169
L AM I ++
Sbjct: 1123 LAAMNIKVKL 1132
Score = 166 (63.5 bits), Expect = 4.6e-101, Sum P(3) = 4.6e-101
Identities = 73/294 (24%), Positives = 126/294 (42%)
Query: 265 IPIIIVFRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYI 319
+P+ +AL +D I + + F + ++LR +EE Q Q LDY+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQ--VLDYL 304
Query: 320 GKRGATVGVTRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 377
G+R D + A+ + + + H+ + T K Y + +L A G
Sbjct: 305 GERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSN----TDKFYLLCLMTRKLFALARGE 360
Query: 378 RAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQF 431
ED+ D N+ + G L + +L K+ D RA N +++ F
Sbjct: 361 CMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIF 420
Query: 432 AIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-R 488
++ + +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 421 SMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 479
Query: 489 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
+ + R+L WG +CP TP+G CGL+ +L A+ +T V +A+ P L
Sbjct: 480 KMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
Score = 128 (50.1 bits), Expect = 4.6e-101, Sum P(3) = 4.6e-101
Identities = 46/156 (29%), Positives = 67/156 (42%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESD-GE 99
L R +DSF+ + + V E + + D A +S P + + +
Sbjct: 38 LTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAA---ISPPAVPKGTICK 94
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
++P R R TY L D++ V + KG K F+G VPIM++S
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKG-----------IIKQFLGXVPIMVKS 143
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
C LY + L E E + GGYFIING EKV+
Sbjct: 144 KLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 901 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 941
G VD+ L AD LR KV +R R + H +K
Sbjct: 564 GWVDKELAPEVADTLRRFKV-LRERRCSSLDGGGPDSHDRK 603
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 815 (292.0 bits), Expect = 8.1e-101, Sum P(2) = 8.1e-101
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 708
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 769 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 820
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 919
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 821 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 868
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 928
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 988
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1048
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 1108
Query: 1146 QVHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 232 (86.7 bits), Expect = 8.1e-101, Sum P(2) = 8.1e-101
Identities = 120/465 (25%), Positives = 191/465 (41%)
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 158
A ++P R R TY L D+ V I KG K F+G VPIM++S
Sbjct: 96 ANVYPAECRGRRSTYRGKLTADINWAVNGISKG-----------IIKQFLGYVPIMVKSK 144
Query: 159 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQPN 213
C L + L E E + GGYFIING EKV+ + + + + +K R P
Sbjct: 145 LCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPG 204
Query: 214 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 272
Y + + E + V M G +I R L ++ P+ +
Sbjct: 205 YTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 254
Query: 273 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGKR-GATV 326
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 255 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 312
Query: 327 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 313 NVPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEDNPDS 368
Query: 386 YGNKRLDLAGPL-LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT----ITS 440
N+ + G L L L L L A+ +K +N ++ T +T
Sbjct: 369 LVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTK 428
Query: 441 GLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKPRQ 497
+Y ATGN G +G+ V ++L + LSH R ++ + + R+
Sbjct: 429 PFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRR 488
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 489 LLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL 533
Score = 47 (21.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 901 GMVDQVLLTTNADGLRFVKVRVRSVRIP 928
G VD+ L AD LR KV +R RIP
Sbjct: 564 GWVDKDLAPGIADSLRHFKV-LREKRIP 590
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 815 (292.0 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 687 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 746
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 747 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 806
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 807 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 858
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 919
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 859 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 906
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 907 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 966
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 967 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 1026
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 1027 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1086
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1087 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 1146
Query: 1146 QVHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 1147 TVSVPYVFRYFVAELAAMNIKVKL 1170
Score = 232 (86.7 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 120/465 (25%), Positives = 191/465 (41%)
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 158
A ++P R R TY L D+ V I KG K F+G VPIM++S
Sbjct: 134 ANVYPAECRGRRSTYRGKLTADINWAVNGISKG-----------IIKQFLGYVPIMVKSK 182
Query: 159 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQPN 213
C L + L E E + GGYFIING EKV+ + + + + +K R P
Sbjct: 183 LCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPG 242
Query: 214 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 272
Y + + E + V M G +I R L ++ P+ +
Sbjct: 243 YTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 292
Query: 273 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGKR-GATV 326
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 293 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 350
Query: 327 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 351 NVPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEDNPDS 406
Query: 386 YGNKRLDLAGPL-LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT----ITS 440
N+ + G L L L L L A+ +K +N ++ T +T
Sbjct: 407 LVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTK 466
Query: 441 GLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKPRQ 497
+Y ATGN G +G+ V ++L + LSH R ++ + + R+
Sbjct: 467 PFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRR 526
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 527 LLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL 571
Score = 47 (21.6 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 901 GMVDQVLLTTNADGLRFVKVRVRSVRIP 928
G VD+ L AD LR KV +R RIP
Sbjct: 602 GWVDKDLAPGIADSLRHFKV-LREKRIP 628
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 799 (286.3 bits), Expect = 1.3e-99, Sum P(2) = 1.3e-99
Identities = 195/504 (38%), Positives = 269/504 (53%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + +Q R D
Sbjct: 649 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSD 708
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 807 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSG 863
++S E + +K+ D S G++ G KLD+DGL G ++
Sbjct: 769 AHGSVYKS---EFIDLSERIKQG----DDSLVFGVKPGDPRVLQKLDNDGLPFIGAQLKY 821
Query: 864 EDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VKV 920
D ++ + +G Y +++ I VD + + +N G +F V +
Sbjct: 822 GDPYYSY---LNLNTGEGFVMYYKSKENCI---------VDNIKVCSNDTGTGKFKCVCI 869
Query: 921 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 980
+R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG L
Sbjct: 870 TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGML 929
Query: 981 IECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1036
IE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 930 IESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELE 989
Query: 1037 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1096
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG
Sbjct: 990 ADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHG 1049
Query: 1097 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQ 1146
S L +RLF+ SD HVC CG + L+K + C C N++D +
Sbjct: 1050 TSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYICALC-NRSDTID 1108
Query: 1147 -VHIPYACKLLFQELMAMAIAPRM 1169
+ +PY + EL AM I ++
Sbjct: 1109 TISLPYVFRYFVAELAAMNIKVKL 1132
Score = 245 (91.3 bits), Expect = 1.3e-99, Sum P(2) = 1.3e-99
Identities = 127/527 (24%), Positives = 218/527 (41%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTE-SDGE 99
L R ++SF+ ++ + V E + + + +S P + + S +
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQAVPPFEFAFKDERIC---LTIVDAVISPPAVPKGSICK 94
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
++P R R TY L D++ V I KG K F+G VPIM++S
Sbjct: 95 ELNVYPAECRGRRSTYRGKLTADISWSVNGISKG-----------VIKQFLGYVPIMVKS 143
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQP 212
C LY K L E E + GGYFIING EKV+ + + + V +K R P
Sbjct: 144 KLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGP 203
Query: 213 NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVF 271
Y + + E + V M G +I R L ++ P+
Sbjct: 204 GYTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFAL 253
Query: 272 RALGFVADKDILEHICYDFQD-----TQMMELLRPSLEEAFVIQNQQVALDYIGKR-GAT 325
+AL +D I + + +D + ++LR +EE Q Q L+Y+G+R
Sbjct: 254 KALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQ--VLNYLGERFRVK 311
Query: 326 VGVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 384
+ + + A E L + + H+ + T+K Y + +L A G E++ D
Sbjct: 312 LSLPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEENPD 367
Query: 385 HYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 438
N+ + G L + ++ K+ D ++ N +++ F++ +
Sbjct: 368 SLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGID-L 426
Query: 439 TSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKP 495
T +Y LATGN G +G+ V ++L + LSH R ++ + +
Sbjct: 427 TKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTV 486
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
R+L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 487 RRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQSVYTASIPAL 533
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 802 (287.4 bits), Expect = 8.7e-99, Sum P(2) = 8.7e-99
Identities = 192/504 (38%), Positives = 264/504 (52%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E + TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSD 708
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV + P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D + E F + + + G++ G KLDDDGL G ++
Sbjct: 769 AHGSVYKSEFID--------LSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLE 820
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 919
D ++ + +G Y +++ + VD + + +N G + +
Sbjct: 821 YGDPYYSY---LNLNTGEGFVVYYKSKENCV---------VDNIKVCSNDMGSGKFKCIC 868
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ VR R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGM 928
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMEL 988
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAH 1048
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD H+C CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTID 1108
Query: 1146 QVHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 233 (87.1 bits), Expect = 8.7e-99, Sum P(2) = 8.7e-99
Identities = 122/472 (25%), Positives = 204/472 (43%)
Query: 103 LFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 160
++P R R TY L D++ V + KG K F+G VPIM++S C
Sbjct: 98 VYPAECRGRKSTYRGRLTADISWAVNGVPKG-----------IIKQFLGYVPIMVKSKLC 146
Query: 161 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 220
LY + L E E + GGYFIING EKV+ +M + V ++ P +A
Sbjct: 147 NLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVI----RM----LIVPRRNFP-----IAM 193
Query: 221 VRSMAESQNRPPSTMF---VRMLSRTSAKGGSSGQYIR---ATLPYI-RTEI---PIIIV 270
VR +S+ T F +R + + + Y+ L +I R E+ P+
Sbjct: 194 VRPKWKSRGLG-YTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFA 252
Query: 271 FRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 325
+AL +D I + + F + ++LR +EE +Q+ L+Y+G+
Sbjct: 253 LKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEG--CHSQKQVLNYLGECFRV 310
Query: 326 VGVTRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDR 383
D ++ A+ +L + + H+ + T K Y + +L A G +D+
Sbjct: 311 KLSLPDWYPNVEAAEFLLNQCICIHLQSN----TDKFYLLCLMTRKLFALARGECMDDNP 366
Query: 384 DHYGNKRLDLAGPLLGGLFRMLFR----------KLTRDVRAYVQKCVDNGKDVNLQFAI 433
D N+ ++ P G LF M + K+ D RA N +++ F++
Sbjct: 367 DSLVNQ--EVLSP--GQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM 422
Query: 434 KAKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REG 490
+ +T +Y LATGN G +G+ V ++L + LSH R ++ +
Sbjct: 423 GTE-LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKM 481
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
+ R+L WG +CP TP+G CGL+ +L A+ +T V +A+ P L
Sbjct: 482 RTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 790 (283.2 bits), Expect = 1.4e-98, Sum P(3) = 1.4e-98
Identities = 200/497 (40%), Positives = 260/497 (52%)
Query: 695 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 754
TH E+ P +L V A IPF DHNQSPRN YQ M KQ MG + +YQ+R D Y L
Sbjct: 655 THQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQT 714
Query: 755 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 814
PQ PLV +H P G NAIVA+ Y+GY+ ED++I+N+SS +RGF
Sbjct: 715 PQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSV--- 771
Query: 815 YRDEEKKMGTLVKED----FG-RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 869
Y+ E + VK D FG +P MG KLD DGL G+ + D G
Sbjct: 772 YKTEIIDLSEKVKGDDSIVFGVKPGDPKVMG-------KLDADGLPFIGSVLKYGDPFYG 824
Query: 870 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 929
IS + Q Y ++ + + T + + V R R P
Sbjct: 825 Y---ISLNTGQSHVYFYKYQESCV------VDNIKVCSNETGTGRFKRICVTSRVPRNPT 875
Query: 930 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 989
IGDKF+SRHGQKG + + EDMP+T G++PDI+ NPH PSRMTIG LIE + GK A
Sbjct: 876 IGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSA 935
Query: 990 AHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1045
+ G DATPFT + +++ + L GY G E +Y+G +G L A IF+G Y
Sbjct: 936 SLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVY 995
Query: 1046 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1105
YQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RL
Sbjct: 996 YQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRL 1055
Query: 1106 FDQSDAYRVHVCEHCGLIAIANLKK---NSFECRGCK------NKTDIVQ-VHIPYACKL 1155
F+ SD VC CG + L+K N R K NK+D ++ V +PY K
Sbjct: 1056 FNCSDRSVAQVCMDCGSLLSTLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKY 1115
Query: 1156 LFQELMAMAIAPRMLTK 1172
EL AM I ++ K
Sbjct: 1116 FVAELAAMNIKIKLDVK 1132
Score = 153 (58.9 bits), Expect = 1.4e-98, Sum P(3) = 1.4e-98
Identities = 46/156 (29%), Positives = 74/156 (47%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESD-GE 99
LV+ ++SFD+ + + + +V+ +E + F E + P +++
Sbjct: 37 LVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRI---SLSFVEAIIHTPSVSKGGISR 93
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
+FP R R TY A L DV+ V + KG K +G++PIM++S
Sbjct: 94 DLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKG-----------IIKQSLGQMPIMVKS 142
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
C L+ S K+L E E + GGYFI+NG EKV+
Sbjct: 143 KLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVI 178
Score = 128 (50.1 bits), Expect = 1.4e-98, Sum P(3) = 1.4e-98
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 438 ITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAK 494
+T +Y LATGN G +G+ V ++L + LSH R ++ + +
Sbjct: 424 LTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483
Query: 495 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 537
R+L WG +CP TP+G+ CGL+ ++ + + + YP
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMT--AHCEIVAPVYP 524
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 815 (292.0 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 438 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 497
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 498 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 557
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 558 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 609
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 919
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 610 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 657
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 658 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 717
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 718 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 777
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 778 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 837
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 838 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 897
Query: 1146 QVHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 898 TVSVPYVFRYFVAELAAMNIKVKL 921
Score = 154 (59.3 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
Identities = 73/293 (24%), Positives = 125/293 (42%)
Query: 265 IPIIIVFRALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYI 319
+P+ +AL +D I + + +D + ++LR +EE Q Q L+Y+
Sbjct: 36 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYL 93
Query: 320 GKR-GATVGVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGR 377
G+ + V + A E L + + H+ + T+K Y + +L A G
Sbjct: 94 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGE 149
Query: 378 RAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 436
ED+ D N+ + G L L L L L A+ +K +N ++
Sbjct: 150 CMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIF 209
Query: 437 T----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-RE 489
T +T +Y ATGN G +G+ V ++L + LSH R ++ +
Sbjct: 210 TMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAK 269
Query: 490 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 539
+ R+L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 270 MRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL 322
Score = 47 (21.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 901 GMVDQVLLTTNADGLRFVKVRVRSVRIP 928
G VD+ L AD LR KV +R RIP
Sbjct: 353 GWVDKDLAPGIADSLRHFKV-LREKRIP 379
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 815 (292.0 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 687 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 746
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 466 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 525
Query: 747 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 806
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 526 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 585
Query: 807 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 862
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 586 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 637
Query: 863 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 919
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 638 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 685
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 686 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 745
Query: 980 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1035
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 746 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 805
Query: 1036 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1095
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 806 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 865
Query: 1096 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1145
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 866 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 925
Query: 1146 QVHIPYACKLLFQELMAMAIAPRM 1169
V +PY + EL AM I ++
Sbjct: 926 TVSVPYVFRYFVAELAAMNIKVKL 949
Score = 132 (51.5 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 79/312 (25%), Positives = 124/312 (39%)
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 158
A ++P R R TY L D+ V I KG K F+G VPIM++S
Sbjct: 96 ANVYPAECRGRRSTYRGKLTADINWAVNGISKG-----------IIKQFLGYVPIMVKSK 144
Query: 159 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQPN 213
C L + L E E + GGYFIING EKV+ + + + + +K R P
Sbjct: 145 LCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPG 204
Query: 214 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 272
Y + + E + V M G +I R L ++ P+ +
Sbjct: 205 YTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 254
Query: 273 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGKR-GATV 326
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 255 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 312
Query: 327 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 313 NVPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEDNPDS 368
Query: 386 YGNKRLDLAGPL 397
N+ + G L
Sbjct: 369 LVNQEVLTPGQL 380
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 746 (267.7 bits), Expect = 4.1e-92, Sum P(2) = 4.1e-92
Identities = 188/514 (36%), Positives = 267/514 (51%)
Query: 680 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 739
++ + +E Y D TH E+ + + A++IP PD+NQSPRN YQ MGKQ MG
Sbjct: 640 MEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCL 699
Query: 740 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 799
N+ + Y L P PL +++ G NAIVA+ Y+GY+ ED++I+N+
Sbjct: 700 NWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINK 759
Query: 800 SSIDRGFFRSLFFRSYRDEEKKMGTLVKED--FGRPDRSNTMGMRHGSYDKLDDDGLAPP 857
++ +RGF +++ K TL K+ F R + ++H LD DGL P
Sbjct: 760 AAYERGFAYGSIYKT------KFLTLDKKSSYFARHPHMPEL-IKH-----LDTDGLPHP 807
Query: 858 GTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV--LLTTNADGL 915
G+++S G D G+ + Y + + E +V+ + L + +
Sbjct: 808 GSKLS-----YGSPLYCYFD---GEVATYK----VVKMDEKEDCIVESIRQLGSFDLSPK 855
Query: 916 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 975
+ V + +R R IGDKF+SR GQKG Y ED+P+T G+ PDI+ NPH PSRM
Sbjct: 856 KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRM 915
Query: 976 TIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHT 1031
TI +IE + GK AA G DATPF + +D K L GY G E +Y+G
Sbjct: 916 TIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVD 975
Query: 1032 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1091
GR +TA IF G +YQRL+HMV DK R G V+ T QP +GR R GG+RFGEMERD
Sbjct: 976 GREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDA 1035
Query: 1092 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL----KKNSF--------ECRGCK 1139
+I+HGA+ L++RLF SD VC CG I +A L K+N CR C
Sbjct: 1036 LISHGAAFLLQDRLFHNSDKTHTLVCHKCGSI-LAPLQRIVKRNETGGLSSQPDTCRLCG 1094
Query: 1140 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
+ + + + IP++ K L EL ++ I R E
Sbjct: 1095 DNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128
Score = 241 (89.9 bits), Expect = 4.1e-92, Sum P(2) = 4.1e-92
Identities = 121/514 (23%), Positives = 226/514 (43%)
Query: 46 LDSFDEFIQNTMQEIVDESADIEIRPESQHNP-GQQSDFA--EIYLSKPMMTES--DGET 100
+DSFDE + T+ +D SA I P +P G++ I+++KP + + D T
Sbjct: 40 VDSFDEML--TVG--LDNSAKHMI-PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRT 94
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 160
++P +R +++YS V + G V +T + +G+VPIMLRS C
Sbjct: 95 REIYPTDSRQLHVSYSGMCSV-------RLGWSVNGVQKTP--INMDLGEVPIMLRSKAC 145
Query: 161 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ-PNKYAYVA 219
L Q + +++ + GE + GG F+I G+EK++ NH K+ ++ +
Sbjct: 146 NLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFS 205
Query: 220 EVRSMAESQNRPPSTM--FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFV 277
++ + ++ S++ V L+ +AK S +++ L Y+ P+ ++ + L
Sbjct: 206 DLGMLVQTVREDESSLSNVVHYLNNGTAKFMFS--HVKR-LSYV----PVCLILKCLMDY 258
Query: 278 ADKDILEHICYDFQDTQM-MELLRPSLEEAFVIQNQQV-----ALDYIGK--RGATVGVT 329
D++I + ++ Q + ++ L E +QN+ V +IG R V
Sbjct: 259 TDEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVP 315
Query: 330 RDKRIKYAKE-ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGN 388
+ + IL++ ++ H+ T + K ++I +L CA G+ ++ D
Sbjct: 316 EWQPDDDVTDFILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMM 371
Query: 389 KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG-----KDVNLQFAIKAKTITSGLK 443
+ + L G L VR +QK + + V Q +A + ++
Sbjct: 372 QEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIE 431
Query: 444 YSLATGNWGQANAAGT--RAGV---SQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQ 497
LATGN G +G+ ++ +NR+ Y +SH R ++ + + RQ
Sbjct: 432 SFLATGNIASRTGLGLMQNSGLVIMAENINRMRY---MSHFRAIHRGSYFTTMRTTEARQ 488
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 531
L WG +CP TP+G CGL+ +L L I++
Sbjct: 489 LLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISM 522
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 188/429 (43%), Positives = 267/429 (62%)
Query: 750 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 809
Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R
Sbjct: 2 YLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRC 61
Query: 810 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 869
L +++ + K+ + P ++ LD DG+ PG +V + V++
Sbjct: 62 LVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVN 121
Query: 870 KTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 924
K+ P ++Q +G Q +Y +D I+ + + +++V++++NA+ +K+ +R
Sbjct: 122 KSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQ 179
Query: 925 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 984
R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE +
Sbjct: 180 TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELL 239
Query: 985 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1044
GK G+ T F V ++ + L + GY G + + +G TG L A I+ GP
Sbjct: 240 AGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPV 299
Query: 1045 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1104
YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ER
Sbjct: 300 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLER 359
Query: 1105 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1164
L SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL +M
Sbjct: 360 LMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMN 413
Query: 1165 IAPRM-LTK 1172
I PR+ L+K
Sbjct: 414 IIPRLKLSK 422
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 738 (264.8 bits), Expect = 3.8e-88, Sum P(4) = 3.8e-88
Identities = 171/450 (38%), Positives = 244/450 (54%)
Query: 695 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 754
TH EIHP+ ++ V A++ P+ DHNQSPRN YQ M KQ M QFR D Y L
Sbjct: 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 734
Query: 755 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 814
PQ P+V T+ + P G NAIVA+ ++G++ ED++I+N+SS++RG +++
Sbjct: 735 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 794
Query: 815 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 874
+ + + D G +S + ++D DGL G ++ ++
Sbjct: 795 ENIDLSDQNS--RFDSG--SKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCS----- 845
Query: 875 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVKVRVRSVRIPQIGDK 933
DE + +R+ +R + ++ +VD V + + + +R R R P IGDK
Sbjct: 846 IYDEVTNK-TRHMKR------KGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDK 898
Query: 934 FSSRHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 992
FSSRHGQKG + DMP+ V G+ PD+I+NPHA PSRMTI L+E I K +
Sbjct: 899 FSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLH 958
Query: 993 GKEGDATPFTDVT--------------VDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1038
GK DATPF D VD++ L + G+ G ET+Y+G+ G L
Sbjct: 959 GKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCE 1018
Query: 1039 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1098
IF+GP YYQRL+HMV DK R G V LT QP +GR R GG+RFGEMERD ++AHGAS
Sbjct: 1019 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1078
Query: 1099 HFLKERLFDQSDAYRVHVCEHCGLIAIANL 1128
+ L +RL SD + VC CG + +++
Sbjct: 1079 YLLHDRLHTSSDHHIADVCSLCGSLLTSSV 1108
Score = 141 (54.7 bits), Expect = 3.8e-88, Sum P(4) = 3.8e-88
Identities = 70/268 (26%), Positives = 121/268 (45%)
Query: 36 FEE-KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM- 93
F+E LV ++SFD + + + I+P S ++P +++ + I+L P++
Sbjct: 16 FKELHNLVTHHIESFDYMTLKGLDVMFNR-----IKPVSVYDPNTENELS-IWLENPLVF 69
Query: 94 ---TESDGETAT---LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF 147
ES T+ L P R ++Y+ DV K +DG V + DF
Sbjct: 70 APQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCF----KYNDGVVVRDKFDF---- 121
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEKMSTNHV 204
G+ PIML S C+L + L + E + GGYFI+NG E+V +IA ++ +
Sbjct: 122 -GQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSM 180
Query: 205 Y--VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR 262
F+ R+ + R + + Q+ T+ + L SA+ G +I Y+
Sbjct: 181 IRNSFRDRKEGYSSKAVVTRCVRDDQSSV--TVKLYYLRNGSARVGF---WIVGR-EYL- 233
Query: 263 TEIPIIIVFRALGFVADKDILEHI--CY 288
+P+ +V +AL D++I E + CY
Sbjct: 234 --LPVGLVLKALTNSCDEEIYESLNCCY 259
Score = 101 (40.6 bits), Expect = 3.8e-88, Sum P(4) = 3.8e-88
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 460 RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACG 518
RAG + RL + LS R ++ G + R+L WG +CP TP+G CG
Sbjct: 452 RAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCG 511
Query: 519 LVKNLALMVYIT 530
L+ ++ IT
Sbjct: 512 LLNHMTRTSRIT 523
Score = 50 (22.7 bits), Expect = 3.8e-88, Sum P(4) = 3.8e-88
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1135 CRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1165
C CK + V +PY + L EL +M I
Sbjct: 1134 CYSCKTSKGMETVAMPYVFRYLAAELASMNI 1164
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 520 (188.1 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 134/345 (38%), Positives = 184/345 (53%)
Query: 688 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 747
E + + E+ + L AS+ PF DHNQSPRN YQ M KQ MGI N +
Sbjct: 924 EQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTN 983
Query: 748 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 807
Y + PQ PLV TR E P+G NA+VAI Y+GY+ ED++I+N++S DRG F
Sbjct: 984 KIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIF 1043
Query: 808 RSLFFRSYRDEEKKMGTLVKEDFGRPDR---SNTMGMRHGSYDK----LDDDGLAPPGTR 860
R+ +++ + +K+G FG R +N ++ +Y+ L+ DGL P +
Sbjct: 1044 RTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGL--PCVQ 1101
Query: 861 VSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 920
I + +P+ +G + T + S R+ VD V + N + V
Sbjct: 1102 QK-----ITEGSPLYSYINKG--NELTTYE---SFRNHGEYFVDFVSIGKNNSN-QVAVV 1150
Query: 921 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 980
++RS R PQ+GDKF+SRHGQKG V + QEDMP+ GI PDII NPH IPSRMTIG L
Sbjct: 1151 KLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGML 1210
Query: 981 IECIMGKVAAHMGKEGDATPFTDVTVDNI--SKALHKCGYQMRGF 1023
IE I GK A+ GK DATPF T + + CG ++GF
Sbjct: 1211 IESICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCG--IKGF 1253
Score = 285 (105.4 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 70/184 (38%), Positives = 97/184 (52%)
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
D +D +K L GY G E +Y+G G L A IF+G YYQRL+HM DK R
Sbjct: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GPV LT QP +G+ + GG+R GEMERD +I+HG S + ER SD + VC CGL
Sbjct: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
Query: 1123 IAIANLKKNS----FECR--GCKNKTDIVQ--------VHIPYACKLLFQELMAMAIAPR 1168
I ++ N+ + R G K+K + + + IPY + L EL+ + + R
Sbjct: 1445 ILSPIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIFIPYVIRYLLNELICLNVTIR 1504
Query: 1169 MLTK 1172
+ K
Sbjct: 1505 LNMK 1508
Score = 143 (55.4 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 41/165 (24%), Positives = 76/165 (46%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH--------NPGQQSDF--AEIYL 88
K LV+ +D F+ FI ++ I + +E P+ + N + F ++I +
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVSDIQI 128
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
PM+ GE +P +L TY L + + ++ +E+ T +
Sbjct: 129 KNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQY------KDEIASTT----ICA 178
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
G +PIM+ S+ C L ++K+L + GE GG+F+++G KV+
Sbjct: 179 GHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 116 (45.9 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 369 RLLLCALGRRAEDDRDH-Y--GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 425
RL +L + +ED D Y N + + L +F KL R V Y ++ N
Sbjct: 477 RLNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY-NDN 535
Query: 426 DVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLN- 483
+ L+ +S + + TGN N ++G + + +++ R ++
Sbjct: 536 YMFLENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR 595
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
++ K+ PR+L WG +CP TP+G CGL+ +LA +I
Sbjct: 596 GTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 42 (19.8 bits), Expect = 2.0e-35, Sum P(5) = 2.0e-35
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 790 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY-DK 848
+++ S + IDR + L + D + V D G S D
Sbjct: 827 SKDGSYKYEKHKIDRKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSDYDYGYDSNSDGDS 886
Query: 849 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 878
+ +SG D + TT I DE
Sbjct: 887 KSNSNFDSKSDNISGSDNNMSTTTYIDSDE 916
Score = 40 (19.1 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 335 KYAKEILQKEMLPHV 349
K AK+IL+ +LPH+
Sbjct: 361 KKAKDILKYCILPHI 375
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 520 (188.1 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 134/345 (38%), Positives = 184/345 (53%)
Query: 688 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 747
E + + E+ + L AS+ PF DHNQSPRN YQ M KQ MGI N +
Sbjct: 924 EQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTN 983
Query: 748 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 807
Y + PQ PLV TR E P+G NA+VAI Y+GY+ ED++I+N++S DRG F
Sbjct: 984 KIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIF 1043
Query: 808 RSLFFRSYRDEEKKMGTLVKEDFGRPDR---SNTMGMRHGSYDK----LDDDGLAPPGTR 860
R+ +++ + +K+G FG R +N ++ +Y+ L+ DGL P +
Sbjct: 1044 RTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGL--PCVQ 1101
Query: 861 VSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 920
I + +P+ +G + T + S R+ VD V + N + V
Sbjct: 1102 QK-----ITEGSPLYSYINKG--NELTTYE---SFRNHGEYFVDFVSIGKNNSN-QVAVV 1150
Query: 921 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 980
++RS R PQ+GDKF+SRHGQKG V + QEDMP+ GI PDII NPH IPSRMTIG L
Sbjct: 1151 KLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGML 1210
Query: 981 IECIMGKVAAHMGKEGDATPFTDVTVDNI--SKALHKCGYQMRGF 1023
IE I GK A+ GK DATPF T + + CG ++GF
Sbjct: 1211 IESICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCG--IKGF 1253
Score = 285 (105.4 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 70/184 (38%), Positives = 97/184 (52%)
Query: 1003 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1062
D +D +K L GY G E +Y+G G L A IF+G YYQRL+HM DK R
Sbjct: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query: 1063 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1122
GPV LT QP +G+ + GG+R GEMERD +I+HG S + ER SD + VC CGL
Sbjct: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
Query: 1123 IAIANLKKNS----FECR--GCKNKTDIVQ--------VHIPYACKLLFQELMAMAIAPR 1168
I ++ N+ + R G K+K + + + IPY + L EL+ + + R
Sbjct: 1445 ILSPIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIFIPYVIRYLLNELICLNVTIR 1504
Query: 1169 MLTK 1172
+ K
Sbjct: 1505 LNMK 1508
Score = 143 (55.4 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 41/165 (24%), Positives = 76/165 (46%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH--------NPGQQSDF--AEIYL 88
K LV+ +D F+ FI ++ I + +E P+ + N + F ++I +
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVSDIQI 128
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
PM+ GE +P +L TY L + + ++ +E+ T +
Sbjct: 129 KNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQY------KDEIASTT----ICA 178
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
G +PIM+ S+ C L ++K+L + GE GG+F+++G KV+
Sbjct: 179 GHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 116 (45.9 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 369 RLLLCALGRRAEDDRDH-Y--GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 425
RL +L + +ED D Y N + + L +F KL R V Y ++ N
Sbjct: 477 RLNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY-NDN 535
Query: 426 DVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLN- 483
+ L+ +S + + TGN N ++G + + +++ R ++
Sbjct: 536 YMFLENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR 595
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
++ K+ PR+L WG +CP TP+G CGL+ +LA +I
Sbjct: 596 GTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 42 (19.8 bits), Expect = 2.0e-35, Sum P(5) = 2.0e-35
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 790 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY-DK 848
+++ S + IDR + L + D + V D G S D
Sbjct: 827 SKDGSYKYEKHKIDRKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSDYDYGYDSNSDGDS 886
Query: 849 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 878
+ +SG D + TT I DE
Sbjct: 887 KSNSNFDSKSDNISGSDNNMSTTTYIDSDE 916
Score = 40 (19.1 bits), Expect = 1.2e-86, Sum P(5) = 1.2e-86
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 335 KYAKEILQKEMLPHV 349
K AK+IL+ +LPH+
Sbjct: 361 KKAKDILKYCILPHI 375
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 698 (250.8 bits), Expect = 7.1e-71, Sum P(2) = 7.1e-71
Identities = 178/507 (35%), Positives = 268/507 (52%)
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 207
IG++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 208 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 267
R K A A V S + SRT+ Y+R + +IPI
Sbjct: 193 ADR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT--LSEDIPI 236
Query: 268 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGAT 325
+I+F+A+G +D++I++ I + +M PSLEE Q Q AL YIG +
Sbjct: 237 VIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRR 293
Query: 326 V----GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 381
G + +I+ A+E+L +L HV +F K Y ++ R++L A G D
Sbjct: 294 QRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVD 352
Query: 382 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTIT 439
DRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT
Sbjct: 353 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQIT 412
Query: 440 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 499
+G+ +++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L
Sbjct: 413 NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 472
Query: 500 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEIS 554
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 473 PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS 532
Query: 555 PAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDY 614
P +F+NG +G+ RD + LV T +N V + ++ + + I +D
Sbjct: 533 ---YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDG 589
Query: 615 GRCSRPLFIVEKQRLLIKKRDIIALQQ 641
GR RP IV+KQ+ + + + L Q
Sbjct: 590 GRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 277 (102.6 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 71/203 (34%), Positives = 110/203 (54%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 88
W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 89 SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFI 148
P + ES T + P RLR++TYSAP+ VD+ +G + + + I
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIRNA----LPI 133
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 209 KRQPNKYAYVAEVRSMA-ESQNR 230
R K A A V S E ++R
Sbjct: 194 DR---KGAVGASVTSSTHEKKSR 213
Score = 52 (23.4 bits), Expect = 7.1e-71, Sum P(2) = 7.1e-71
Identities = 18/77 (23%), Positives = 40/77 (51%)
Query: 736 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH--FRQLPAGINAIVAIACYSGYNQED 793
+Y+++ R+ Y++ QKP VT + ME L +R ++ ++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 794 --SVIMNQSSIDRGFFR 808
++ + + +I++ F R
Sbjct: 640 DCNIALYEHTINKTFSR 656
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 486 (176.1 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 135/421 (32%), Positives = 217/421 (51%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 831
+L G N +VA + GYN ED++++++ + F S+ Y + + L E+
Sbjct: 679 ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECDARDT-KLGPEEIT 737
Query: 832 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE--AQ--------G 881
R D N +G + LD+ G+ G V D+++GK TP + E A+ G
Sbjct: 738 R-DIPN-VG--EDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFG 793
Query: 882 QASRYTRRDHSISLRHSETG-MVD-QVLLTTNADGLR-----FVKVRVRSVRIPQIGDKF 934
+ +R R D S+ + H E+G +VD +V N D L V+V + R +GDK
Sbjct: 794 EKAREVR-DTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGDKM 852
Query: 935 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 994
+ RHG KG V +EDMP+ +G +I++NP +PSRM IGQ++EC +G A +G
Sbjct: 853 AGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHLGWAAKALGI 912
Query: 995 EGDATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1053
ATP F T ++I +AL K G G + +G TG + + +G Y +L H+V
Sbjct: 913 NV-ATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLKLAHLV 971
Query: 1054 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1113
DDKIH+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 972 DDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDD-- 1029
Query: 1114 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
+ +K +G +I + +P + K+L +EL ++ + ++LT
Sbjct: 1030 ----------VVGRVKTYEAIVKG----ENIPEPGVPESFKVLIKELQSLGLDVKVLTDN 1075
Query: 1174 D 1174
D
Sbjct: 1076 D 1076
Score = 194 (73.4 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 118/436 (27%), Positives = 192/436 (44%)
Query: 129 KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY-DQGGYFIIN 187
K + EE E +DFT + + + +R + E+++ LG+ P + G FI N
Sbjct: 70 KPKYSVEECKE-RDFT--YSAPLRVKVRLLNKETGEIKEQEVF-LGDFPLMTEKGTFIFN 125
Query: 188 GSEKVLIAQEKMSTNHVYVFKKRQPN-KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 246
G+E+V+I+Q S VY ++ PN K Y+A + NR F T
Sbjct: 126 GAERVVISQMVRSPG-VYFSEQVDPNGKKMYLATI-----IPNRGAWLEF-----ETDV- 173
Query: 247 GGSSGQYIRATLPYIRTEIPIIIVFRALGF-----VA------DKDI--LEHICYDFQDT 293
+ Y+R + R ++P+ ++ +ALG+ +A DK I LE D ++
Sbjct: 174 --NDHIYVR--IDRTR-KLPVTVLLKALGYESKGRIAELFDHDDKIIATLERDNTDSREE 228
Query: 294 QMMEL---LRPSLEEAFVIQNQQVALD---YIGKRGATVGVTRDKRIK---------YAK 338
++E+ LRP E +++ + LD + KR V R K K Y +
Sbjct: 229 ALIEIYKKLRPG--EPPTVESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLE 286
Query: 339 EILQKEMLPHVGTGDFCETKKAYY-------FGYIIHRLLLCALGRRAEDDRDHYGNKRL 391
E +KE ++ D+ K+ + Y I LL G+ DD DH GN+RL
Sbjct: 287 EDGEKEYDKYLN--DYVPVKREFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRL 344
Query: 392 DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 451
G LL FR+ ++ R VR + + + + Q I + I + +K +
Sbjct: 345 RSVGELLQNQFRIGLARMERVVRE--RMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQ- 401
Query: 452 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPRQLHNSQWGMMC 507
+SQ +++ + L+H RRL++ P G RE + R +H+S +G MC
Sbjct: 402 -----------LSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMC 450
Query: 508 PAETPEGQACGLVKNL 523
P ETPEG GL+ NL
Sbjct: 451 PIETPEGPNIGLIGNL 466
Score = 75 (31.5 bits), Expect = 9.6e-47, Sum P(3) = 9.6e-47
Identities = 35/144 (24%), Positives = 62/144 (43%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGET 100
L+ Q S+ F+ ++E+ E I P + +F + YL KP + +
Sbjct: 26 LIEIQKKSYQWFLDEGLREVFRE-----ISPITDFTGNLSLEFLDYYLGKPKYSVEE--- 77
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 160
+ R+ TYSAPL V V R++ K + E+ E + VF+G P+M
Sbjct: 78 -------CKERDFTYSAPLRVKV--RLLNK--ETGEIKEQE----VFLGDFPLMTEKG-T 121
Query: 161 TLYQNSEKDLTELGECPYDQGGYF 184
++ +E+ + + + G YF
Sbjct: 122 FIFNGAERVV--ISQMVRSPGVYF 143
Score = 65 (27.9 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 677 NDLVQAR-----LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 731
+++V AR LH E + D ++ P + V S+IPF +H+ + R + M +
Sbjct: 524 DEMVNARHGSEILHVEPSKVD---FVDVSPKQVFSVATSLIPFLEHDDANRALMGANMQR 580
Query: 732 QAMGIYVT 739
QA+ + T
Sbjct: 581 QAVPLIRT 588
Score = 49 (22.3 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 197 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-R 255
E ++ H +P+K +V ++ Q +T + L A G + R
Sbjct: 525 EMVNARHGSEILHVEPSKVDFV----DVSPKQVFSVATSLIPFLEHDDANRALMGANMQR 580
Query: 256 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 315
+P IRTE P+ V + + A KD + ++ ++E R + +E VI+N Q
Sbjct: 581 QAVPLIRTEAPV--VGTGIEYKAAKD--SGVVVLAKNPGVVE--RVTADE-IVIRNDQGQ 633
Query: 316 LD 317
+D
Sbjct: 634 ID 635
Score = 42 (19.8 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
+E KG + + D D+ I ++ D + I + PG+
Sbjct: 198 YESKGRIAELFDHDDKIIATLERDNTDSREEALIEIYKKLRPGE 241
Score = 38 (18.4 bits), Expect = 6.9e-43, Sum P(3) = 6.9e-43
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 541 FLEEWGTENFEEISP 555
FL+E E F EISP
Sbjct: 37 FLDEGLREVFREISP 51
Score = 37 (18.1 bits), Expect = 8.8e-43, Sum P(3) = 8.8e-43
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 316 LDY-IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 356
LDY +GK +V +++ Y+ + K L + TG+ E
Sbjct: 64 LDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKE 105
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 451 (163.8 bits), Expect = 4.7e-56, Sum P(5) = 4.7e-56
Identities = 127/423 (30%), Positives = 214/423 (50%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 831
+L G N +V + GYN ED++IM++ + + S+ Y E + L E+
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDT-KLGPEEIT 809
Query: 832 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQ--------G 881
R D N +G + LD+ G+ G V D+++GK TP +++ A+ G
Sbjct: 810 R-DIPN-VG--EDALRNLDERGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFG 865
Query: 882 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF---VKVRVRS--VRIPQI--GDKF 934
+ +R R D S+ + H G++ V + DG V VR+ V+ +I GDK
Sbjct: 866 EKAREVR-DTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKM 924
Query: 935 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 994
+ RHG KG + +EDMP+ +G DI++NP +PSRM IGQ++E +G A ++G
Sbjct: 925 AGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGI 984
Query: 995 EGDATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1053
ATP F +++ + + G +Y+G TG + +G Y +L HMV
Sbjct: 985 H-IATPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMV 1043
Query: 1054 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1113
DDK+H+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1044 DDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDD-- 1101
Query: 1114 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
I +K +G ++ + +P + K+L +EL ++ + +M++ +
Sbjct: 1102 ----------VIGRVKTYEAIVKG----ENVPEPGVPESFKVLIKELQSLGMDVKMMSSD 1147
Query: 1174 DTK 1176
DT+
Sbjct: 1148 DTE 1150
Score = 149 (57.5 bits), Expect = 4.7e-56, Sum P(5) = 4.7e-56
Identities = 59/212 (27%), Positives = 95/212 (44%)
Query: 323 GATVGVTRDKRIK-YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL-----LLCALG 376
G G + IK YA E + ++ +G + K G I+ + LL +G
Sbjct: 336 GVVEGDVELQSIKIYAPESEGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVG 395
Query: 377 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 436
DD DH GN+RL G LL FR+ ++ R VR + + + + Q I +
Sbjct: 396 DT--DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMS--IQDTNAITPQALINIR 451
Query: 437 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKL 492
+ + +K + +SQ +++ + L+H RRL++ P G RE
Sbjct: 452 PVIAAIKEFFGSSQ------------LSQFMDQTNPLAELTHKRRLSALGPGGLTRERAG 499
Query: 493 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
+ R +H S +G MCP ETPEG GL+ +L+
Sbjct: 500 FEVRDVHYSHYGRMCPIETPEGPNIGLINSLS 531
Score = 85 (35.0 bits), Expect = 4.7e-56, Sum P(5) = 4.7e-56
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 167 EKDLTELGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 225
E+D+ +G+ P + G F+ING+E+V+++Q S + Y K + K + A V
Sbjct: 108 EQDVF-MGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATV---- 162
Query: 226 ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 284
NR + T AK Y+R + R ++P+ ++ RALGF +D++I E
Sbjct: 163 -IPNRGAWLEY-----ETDAK---DVVYVR--IDRTR-KLPVTVLLRALGFGSDQEITE 209
Score = 73 (30.8 bits), Expect = 4.7e-56, Sum P(5) = 4.7e-56
Identities = 35/127 (27%), Positives = 58/127 (45%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY 87
++A IS E L+ Q S+ F+ ++E+ + + IE +F +
Sbjct: 16 SYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIE-----DFTGNLSLEFIDYS 70
Query: 88 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF 147
L +P + + + R++TY+APL V V R+I K + EV E QD VF
Sbjct: 71 LGEPKYSVDE----------CKERDVTYAAPLRVKV--RLINK--ETGEVKE-QD---VF 112
Query: 148 IGKVPIM 154
+G P+M
Sbjct: 113 MGDFPLM 119
Score = 48 (22.0 bits), Expect = 4.7e-56, Sum P(5) = 4.7e-56
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 678 DLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
D+V AR E + + ++ P ++ + IPF +++ S R + M +QA+
Sbjct: 590 DIV-ARFRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAV 647
Score = 38 (18.4 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 541 FLEEWGTENFEEISP 555
FL+E E F++ISP
Sbjct: 40 FLDEGLREMFQDISP 54
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 280 (103.6 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 83/262 (31%), Positives = 132/262 (50%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKED 829
+L G N +VA + G+N ED++I+++ + F S+ + E + K+G E+
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEAHDTKLGG---EE 777
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 880
R D N +G S +LD+DG+ G V +D+++GK TP + E
Sbjct: 778 ITR-DIPN-VGEE--SLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAI 833
Query: 881 -GQASRYTRRDHSISLRHSETGMVDQVLLTT--NADGL-----RFVKVRVRSVRIPQIGD 932
G+ +R + D S+ + H E G V V + + N D L ++V+V V R +GD
Sbjct: 834 FGEKAREVK-DTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVGD 892
Query: 933 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 992
K + RHG KG + + EDMP+ +G D+++NP +PSRM +GQ++E +G A H+
Sbjct: 893 KLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGW-AGHL 951
Query: 993 GKEGDATPFTDVTVDN-ISKAL 1013
ATP D D I AL
Sbjct: 952 LGFRVATPVFDGADDTAIEDAL 973
Score = 194 (73.4 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 49/152 (32%), Positives = 84/152 (55%)
Query: 1022 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1081
G + +G TG + +G Y +L H+V+DK+H+R GP ++++QP G+++ GG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 1082 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1141
RFGEME M A+G +H L+E L +SD IA K ++E K +
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSDD-------------IAGRAK-AYESI-VKGE 1171
Query: 1142 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
D++Q +P + K+L +EL ++ +A ++ +E
Sbjct: 1172 -DVIQPGVPESFKVLVKELQSLGLAVEVINEE 1202
Score = 140 (54.3 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 47/163 (28%), Positives = 80/163 (49%)
Query: 366 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 425
II R+++ G+ DD DH GN+R+ G L+ FR+ +L R R + + N +
Sbjct: 312 IIKRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVARERMS--IVNLE 369
Query: 426 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS- 484
V + + + S +K G++ +SQ +++ + +++ RRL++
Sbjct: 370 VVTPSALVNIRPVVSAVKEFFG----------GSQ--LSQFMDQTNPLAEITNKRRLSAM 417
Query: 485 -PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
P G RE R +H S +G +CP ETPEG GL+ +LA
Sbjct: 418 GPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLA 460
Score = 67 (28.6 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 677 NDLVQARLHPEEAYA----DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 732
++ ++ARL E Y + + ++ P I V AS+IPF +H+ + R + M +Q
Sbjct: 566 DERIEARL--AERYVIEPPEKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQ 623
Query: 733 AM 734
A+
Sbjct: 624 AV 625
Score = 66 (28.3 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 32/114 (28%), Positives = 54/114 (47%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGET 100
L+ QL SF F + ++E+++E + I+ + N + +F +P ++E +
Sbjct: 31 LIEMQLQSFVWFQEEGLRELIEEISPIK---DFVGNR-LELEFIGYEFREPRLSEYE--- 83
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
R+ TYS PLYV R+I K GE + E D +F G +P+M
Sbjct: 84 -------CTQRDQTYSVPLYVKA--RLIVKT-TGE-IKEPFD---LFFGDIPLM 123
Score = 51 (23.0 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 262 RTEIPIIIVFRALGFVADKDIL 283
R +IP+ + RA+G+ D DIL
Sbjct: 192 RRKIPVSTLLRAIGYSDDLDIL 213
Score = 39 (18.8 bits), Expect = 1.8e-45, Sum P(5) = 1.8e-45
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 276 FVADKDILEHICYDFQDTQMME 297
FV ++ LE I Y+F++ ++ E
Sbjct: 60 FVGNRLELEFIGYEFREPRLSE 81
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 222 (83.2 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 998 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
+TP F V ++ SK M G +Y+G TG ++ + +G Y +L H+VD+K
Sbjct: 1214 STPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEK 1273
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
+H+R GP ++T+QP G++ GG RFGEME + A+GA+H L+E L +SD
Sbjct: 1274 VHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSD 1327
Score = 167 (63.8 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
++ VKV + + R ++GDK + RHG KG V + DMP+ G + DI +NP +PSR
Sbjct: 1076 IKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSR 1135
Query: 975 MTIGQLIECIMGKVAAHMGKE 995
M IGQ++E +G V +G +
Sbjct: 1136 MNIGQILESHLGLVGLRLGDQ 1156
Score = 149 (57.5 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 51/156 (32%), Positives = 75/156 (48%)
Query: 376 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR-AYVQKCVDNGKDVNLQFAIK 434
G+ DDRDH GN+R+ G LL + K+ + +R + D K + I
Sbjct: 451 GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDL-IN 509
Query: 435 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 494
K IT+ + TG GQ +SQ +++ S ++H RRL S +G EG L K
Sbjct: 510 PKMITTTI-IEFFTG--GQ---------LSQFMDQTNPLSEVTHKRRL-SALG-EGGLVK 555
Query: 495 PR------QLHNSQWGMMCPAETPEGQACGLVKNLA 524
R +H + +G +CP ETPEGQ GL+ L+
Sbjct: 556 ERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLS 591
Score = 104 (41.7 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 26/102 (25%), Positives = 52/102 (50%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 831
+L G NA++A ++GYN ED++++++ I F S+ E +++ ++E
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEI-- 861
Query: 832 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
D N ++ LD+ G+A GT + +++GK +P
Sbjct: 862 TKDIPN---VKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP 900
Score = 68 (29.0 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 678 DLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
+ V+AR E A + ++ +++GV AS+IPF +H+ + R S M +QA+
Sbjct: 647 EFVEARQDGETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAV 705
Score = 62 (26.9 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 184 FIINGSEKVLIAQEKMSTNHVYVFKKRQP----NKYAYVAEVRSMAESQNRPPSTMFVRM 239
FIING E+V++ Q S +FK+ + NK Y A++ +R F
Sbjct: 140 FIINGVERVVVNQLHRSPG--VIFKEEESSTVANKLVYTAQI-----IPDRGSWLYF--- 189
Query: 240 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 291
AK Y+R R ++P+ ++FRALG+ +DI++ + Y Q
Sbjct: 190 --EYDAK---DVLYVRINK---RRKVPVTMLFRALGY-KKQDIIK-LFYPIQ 231
Score = 53 (23.7 bits), Expect = 6.6e-47, Sum P(7) = 6.6e-47
Identities = 32/125 (25%), Positives = 53/125 (42%)
Query: 32 ISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKP 91
IS E L++ Q SFD F+ E E I P H+P Q+ + Y+S
Sbjct: 20 ISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFPI--HDP--QNRLSLEYVS-- 73
Query: 92 MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTK--VFIG 149
+E T+ + R LTYS L + + + +K E +D + ++I
Sbjct: 74 --SEIGKPKYTI--RECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEIYIR 129
Query: 150 KVPIM 154
++P+M
Sbjct: 130 EIPLM 134
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 192 (72.6 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 44/114 (38%), Positives = 66/114 (57%)
Query: 998 ATPFTDVTVDNISKALHKCG-YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
ATP D + K L K G G +Y+G TG + + +G Y +L H+VDDK
Sbjct: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 169 (64.5 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 44/133 (33%), Positives = 67/133 (50%)
Query: 868 IGKTTPISQDEAQGQASRYTRRDHSISLR-HSETGMVDQVLLTTNADG-LRFVKVRVRSV 925
+G T Q++ + A +Y H + ++ + Q A G L+ VKV +
Sbjct: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG--DDLAPGVLKIVKVYLAVK 1057
Query: 926 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 985
R Q GDK + RHG KG + EDMP+ G DI++NP +PSRM IGQ++E +
Sbjct: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117
Query: 986 GKVAAHMGKEGDA 998
G A +G + +A
Sbjct: 1118 GMAAKGIGDKINA 1130
Score = 133 (51.9 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 366 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 425
++ +L+ G+ DD DH GN+R+ G + FR+ L R RA ++
Sbjct: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV---GLVRVERAVKERLSLGDL 484
Query: 426 DVNL-QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 484
D + Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 485 DTLMPQDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISA 532
Query: 485 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 525
P G RE + R +H + +G +CP ETPEG GL+ +L++
Sbjct: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577
Score = 109 (43.4 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 829
+L G N VA ++GYN EDS+++++ + F ++ + + K+G E+
Sbjct: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP---EE 849
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
D N +G + KLD+ G+ G V+G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVTGGDILVGKVTP 889
Score = 79 (32.9 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 41 LVRQQLDSFDEFIQNTMQ-EIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 99
L+ QLDSF +FI+ + + E+A + P ++ + + L +P+ +
Sbjct: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQE-- 84
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
++R +TYSAPL V + + VI + E + +V++G++P+M
Sbjct: 85 --------CQIRGVTYSAPLRVKL-RLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130
Score = 70 (29.7 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 37/152 (24%), Positives = 69/152 (45%)
Query: 164 QNSEKDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KY 215
+ + KD+ E +GE P G F+ING+E+V+++Q S + K + + K
Sbjct: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170
Query: 216 AYVAEV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 271
Y A + S + + P +FVR + R R ++P I+
Sbjct: 171 LYNARIIPYRGSWLDFEFDPKDNLFVR-IDR-------------------RRKLPATIIL 210
Query: 272 RALGFVADK--DIL-EHICYDFQDTQM-MELL 299
RAL + ++ D+ E + ++ +D ++ MEL+
Sbjct: 211 RALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242
Score = 63 (27.2 bits), Expect = 9.5e-46, Sum P(7) = 9.5e-46
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 678 DLVQARLHPEEAY--ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
DLV R E + D + ++ ++ V AS+IPF +H+ + R + M +QA+
Sbjct: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690
Score = 48 (22.0 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
FE+ LV +++ D F +QE+ S D ++ PE
Sbjct: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848
Score = 38 (18.4 bits), Expect = 1.0e-38, Sum P(6) = 1.0e-38
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 50 DEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF---AEIYLSK 90
D F + + EI D +E+ PE D ++Y+ K
Sbjct: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265
Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 1051 HMVDDKIHSRGRGPVQILTRQPAE 1074
H V+D + R +G + +R +
Sbjct: 628 HFVEDLVTCRSKGESSLFSRDQVD 651
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 198 (74.8 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 40/110 (36%), Positives = 64/110 (58%)
Query: 1001 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1060
F T + I + L G +Y+G TG++ + +G Y +L H+VDDK+H+R
Sbjct: 1220 FDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHLVDDKMHAR 1279
Query: 1061 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1280 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329
Score = 169 (64.5 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
++ VKV + R Q GDK + RHG KG + EDMP+ +G DI++NP +PSR
Sbjct: 1082 IKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSR 1141
Query: 975 MTIGQLIECIMGKVAAHMGKE 995
M IGQ++E +G A +GK+
Sbjct: 1142 MNIGQVLETHLGWAAKGLGKK 1162
Score = 132 (51.5 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 48/185 (25%), Positives = 87/185 (47%)
Query: 376 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNGKDVNLQFAIK 434
G+ DD DH GN+R+ G + FR+ ++ R V+ + V+N +L +
Sbjct: 459 GKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKDRLSLADVENLMPQDL---VN 515
Query: 435 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REG 490
AK +++ +K + +SQ +++ S ++H RR+++ P G RE
Sbjct: 516 AKPVSAAIKEFFGSSQ------------LSQFMDQNNPLSEITHKRRVSALGPGGLTRER 563
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-VGSAAYPILEFLEEWGTEN 549
+ R +H + +G +CP ETPEG GL+ +LA+ G P + ++ T+
Sbjct: 564 AGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFLETPYRKVVDRVVTDE 623
Query: 550 FEEIS 554
E +S
Sbjct: 624 TEYLS 628
Score = 112 (44.5 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 27/104 (25%), Positives = 54/104 (51%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 829
+L G N +VA ++GYN EDS+++++ ++ F ++ + + + K+G E+
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGP---EE 871
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
S+ + + KLD+ G+ G V+ D+++GK TP
Sbjct: 872 I----TSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGKVTP 911
Score = 86 (35.3 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 34/141 (24%), Positives = 68/141 (48%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI-YLSKPMMTESDGE 99
L+ Q++S+ +F+Q + E + +S S +A + Y+ + ES
Sbjct: 39 LLETQIESYRKFLQKDIAAEKREDNGLHAAFKSVFPITSYSGYAVLEYVGYSLGGES--- 95
Query: 100 TATLFP-KAARLRNLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDFTKVFIGKVPIMLR 156
TLF + +LR LTY+APL V++ + VI K+ G++ + +V++G++P+M
Sbjct: 96 --TLFDVEECKLRGLTYAAPLKVNM-RLVIYDKEAPAGKKAIKDIKEQEVYMGEIPLMTE 152
Query: 157 SSYCTLYQNSEKDLTELGECP 177
+ + +++L P
Sbjct: 153 TGSLVINGTERVVVSQLHRSP 173
Score = 74 (31.1 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 677 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
+DL+ R E D + ++ P I+ V A++IPF +H+ + R S M +QA+
Sbjct: 652 DDLISCRYKGEFTLTTPDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAV 711
Score = 60 (26.2 bits), Expect = 7.1e-43, Sum P(7) = 7.1e-43
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 168 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 219
KD+ E +GE P + G +ING+E+V+++Q S + K + + K Y A
Sbjct: 135 KDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLYSA 194
Query: 220 EV----RSMAESQNRPPSTMFVRM 239
V S + + P +FVR+
Sbjct: 195 RVIPYRGSWLDFEFDPKDCLFVRI 218
Score = 49 (22.3 bits), Expect = 6.2e-34, Sum P(5) = 6.2e-34
Identities = 21/95 (22%), Positives = 38/95 (40%)
Query: 179 DQGGYFII----NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 234
++G Y+I N EK + + +S + F P+K Y+ ++ Q +
Sbjct: 631 EEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTPDKINYM----DVSPRQIVSVAA 686
Query: 235 MFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPII 268
+ L A G + R +P IR E P++
Sbjct: 687 ALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLV 721
Score = 45 (20.9 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
FE+ L+ ++L D F +QE + D ++ PE
Sbjct: 834 FEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGPE 870
Score = 44 (20.5 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH- 767
++ I +P+ ++ N +GK+ + I T Y +Y + QK + + ++
Sbjct: 11 SATISYPEKRRARVN-----LGKREVEILKTPYLLETQIESYRKFL-QKDIAAEKREDNG 64
Query: 768 LHFRQLPAGINAIVAIACYSGY 789
LH A ++ I YSGY
Sbjct: 65 LH-----AAFKSVFPITSYSGY 81
Score = 42 (19.8 bits), Expect = 1.7e-45, Sum P(7) = 1.7e-45
Identities = 27/119 (22%), Positives = 51/119 (42%)
Query: 262 RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 321
R ++P ++ RALG YD + Q++++ + F + + V LD I +
Sbjct: 221 RRKLPATVILRALG------------YDTE--QILDMFYKT--NHFHLNQETVTLDLIPQ 264
Query: 322 R--GATVGVT-RDKRIKYAKEILQKEMLPHVGTGDFCETKKA-----YYFGYIIHRLLL 372
R G V +DK+ K E ++ H+ + E K Y +G +I + ++
Sbjct: 265 RLRGELAVVEIKDKKGKVIVEANRRISARHIRLIEKAEINKLELPDDYLYGKVIGKTII 323
Score = 41 (19.5 bits), Expect = 2.1e-45, Sum P(7) = 2.1e-45
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 191 KVLI-AQEKMSTNHVYVFKKRQPNK 214
KV++ A ++S H+ + +K + NK
Sbjct: 281 KVIVEANRRISARHIRLIEKAEINK 305
Score = 41 (19.5 bits), Expect = 2.6e-13, Sum P(4) = 2.6e-13
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+M R KG S +PY+ P+ IV LG
Sbjct: 1100 KMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLG 1137
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 195 (73.7 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 998 ATPFTDVTVDN-ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
A P + D+ IS L + G +Y+G G + + +G Y +L H+VDDK
Sbjct: 1211 AAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLHHLVDDK 1270
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
IH+R GP ++T+QP G+S GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1271 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324
Score = 161 (61.7 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 38/103 (36%), Positives = 57/103 (55%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
L VKV V Q GDK + RHG KG + EDMP+ +G DII+N +PSR
Sbjct: 1076 LCIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSR 1135
Query: 975 MTIGQLIECIMGKVAAHMGKE-GDATPFTD-VTVDNISKALHK 1015
M +GQ++E +G + ++GK+ G D +TV ++ L++
Sbjct: 1136 MNVGQILETHLGWASVNLGKKIGHILDNLDELTVSHLRNFLYQ 1178
Score = 159 (61.0 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 365 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDN 423
++I +L+L G + DD DH GN+R+ G + FR+ +L R + Y+ DN
Sbjct: 451 HVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGILRLERMIMDYMSSVNFDN 510
Query: 424 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
+ + K + + LK ++ +SQ +++ S ++H RRL+
Sbjct: 511 AMPCDF---VNPKVLATVLKDFFSSSQ------------LSQFMDQTNPLSEVTHKRRLS 555
Query: 484 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
+ P G RE + R +H + +G +CP ETPEGQ GL+ +LA+ I
Sbjct: 556 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARI 605
Score = 121 (47.7 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 831
+L G N +VA + GYN EDS++++ + + F S+ + + TL E
Sbjct: 816 ELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFTSIHIEEFECVVRDT-TLGPEKIM 874
Query: 832 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
R + + S LDD G+ G VS D+++GK TP
Sbjct: 875 R----SVPDINEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 912
Score = 67 (28.6 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 696 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
+ ++ P I+ V AS+IPF ++N + R S M +QA+
Sbjct: 676 YIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 714
Score = 58 (25.5 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 111 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 170
R +T+S P+ + V + ++ K +EV+ F +V K + +S ++ E+++
Sbjct: 97 RGITFSVPIRI-VLRFIVWKV---QEVS----FKEV---KYVVDEETSEKSIKYIKEQEV 145
Query: 171 TELGECP-YDQGGYFIINGSEKVLIAQ 196
+ +G+ P G FIING E+V+++Q
Sbjct: 146 S-IGDLPTMTSHGTFIINGIERVIVSQ 171
Score = 47 (21.6 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 888 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 934
+R +SL G+ + +L T D +R+VK V +P + D+F
Sbjct: 224 KRKLPVSLLLRALGLSNNDILDTFYDKIRYVKSEKGWV-VPFVADRF 269
Score = 46 (21.3 bits), Expect = 7.3e-45, Sum P(7) = 7.3e-45
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 262 RTEIPIIIVFRALGFVADKDILEHICYD 289
+ ++P+ ++ RALG +++ DIL+ YD
Sbjct: 224 KRKLPVSLLLRALG-LSNNDILDTF-YD 249
Score = 42 (19.8 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+M R KG S +PY+ P+ I+ +LG
Sbjct: 1094 KMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLG 1131
Score = 40 (19.1 bits), Expect = 7.0e-33, Sum P(7) = 7.0e-33
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 331 DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH--RLLLCALGRRAEDDRDHYG 387
DK + Y + + + G +T KA++ G R L +GR +D H G
Sbjct: 378 DKNVSYEDALFEIYKVLRSGESPSLDTIKAFFDGLFFEKERYDLSTVGRIKLND--HLG 434
Score = 37 (18.1 bits), Expect = 4.6e-22, Sum P(5) = 4.6e-22
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 801 SID--RGFFRSLFFRSYRDEEKKMGTLVKED 829
S+D + FF LFF R + +G + D
Sbjct: 401 SLDTIKAFFDGLFFEKERYDLSTVGRIKLND 431
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 256 (95.2 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 75/246 (30%), Positives = 119/246 (48%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK--KMGTLVKED 829
++ G N +VAI + G+N ED++I++ ++ S+ + + + K+G E+
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGA---EE 768
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 880
R D N + LD+ G+ G V D+++GK TP + E
Sbjct: 769 ITR-DIPN---ISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAI 824
Query: 881 -GQASRYTRRDHSISLRHSETGMVDQVLLTTNAD------GLR-FVKVRVRSVRIPQIGD 932
G+ +R R D S+ + H E+G V + + + D G+ V+V V R GD
Sbjct: 825 FGEKAREVR-DTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGD 883
Query: 933 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 992
K + RHG KG +G EDMP+ +G DII+N H +P RM IGQ++E +G AH
Sbjct: 884 KLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGW-CAHS 942
Query: 993 GKEGDA 998
G + DA
Sbjct: 943 GWKVDA 948
Score = 186 (70.5 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 1022 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1081
G +++G +G + +G Y +L H+VDDKIH+R GP ++T+QP G+++ GG
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065
Query: 1082 LRFGEMERDCMIAHGASHFLKERLFDQSD--AYRVHVCE 1118
RFGEME M A+GA++ L+E L +SD RV V E
Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1104
Score = 148 (57.2 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 381 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 440
DD DH+GN+RL G L+ R+ ++ R VR + + + + Q I + + +
Sbjct: 368 DDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 425
Query: 441 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 496
+K T +SQ +++ S L+H RRL++ P G RE + R
Sbjct: 426 AIKEFFGTSQ------------LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVR 473
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 531
+H S +G MCP ETPEG GL+ +L+ VY V
Sbjct: 474 DVHPSHYGRMCPIETPEGPNIGLIGSLS--VYARV 506
Score = 58 (25.5 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 29/125 (23%), Positives = 49/125 (39%)
Query: 80 QSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---- 135
Q+D E + P ES E + P L + Y D + + D
Sbjct: 57 QTDSFEWLIGSPRWRESAAERGDVNPVGG-LEEVLYELSPIEDFSGSMSLSFSDPRFDDV 115
Query: 136 --EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE-LGECPY-DQGGYFIINGSEK 191
V E +D + P+ + + + K T +G+ P + G FIING+E+
Sbjct: 116 KAPVDECKDKDMTYAA--PLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTER 173
Query: 192 VLIAQ 196
V+++Q
Sbjct: 174 VVVSQ 178
Score = 54 (24.1 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 696 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
+ ++ P ++ V ++IPF +H+ + R + M +QA+
Sbjct: 578 YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Score = 47 (21.6 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 266 PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 321
P+ ++ +ALG+ +++ I+E + F E++R +LE+ + + LD K
Sbjct: 233 PVTVLLKALGWTSEQ-IVER--FGFS-----EIMRSTLEKDNTVGTDEALLDIYRK 280
Score = 47 (21.6 bits), Expect = 1.1e-32, Sum P(5) = 1.1e-32
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 463 VSQVLNRLTYASTLSHL-RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 521
VS + LT H+ + NSPI +G+ +PR L + G + P + +
Sbjct: 524 VSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEV--EYVPSSEVDYMDV 581
Query: 522 NLALMVYITVGSAAYPILE 540
+ MV +V +A P LE
Sbjct: 582 SPRQMV--SVATAMIPFLE 598
Score = 46 (21.3 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 206 VFKKRQPNKYAYV--AEVRSMAESQNRPPS--TMFVRMLSRTSAKGGSSGQYI-RATLPY 260
V +R+ + YV +EV M S + S T + L A G + R +P
Sbjct: 559 VLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPL 618
Query: 261 IRTEIPII 268
+R+E P++
Sbjct: 619 VRSEAPLV 626
Score = 38 (18.4 bits), Expect = 2.6e-43, Sum P(6) = 2.6e-43
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 302 SLEEAFVIQNQQVALDY-IGKRGATVGVTRDKRIKYAKEILQKEM 345
+L VI ++ L++ + KR TVGV D++ + +L K +
Sbjct: 198 TLHSVKVIPSRGAWLEFDVDKRD-TVGVRIDRKRRQPVTVLLKAL 241
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 191 (72.3 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 42/114 (36%), Positives = 64/114 (56%)
Query: 998 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
ATP F I + L G G +++G TG + +G Y +L H+VDDK
Sbjct: 1186 ATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDK 1245
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1246 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1299
Score = 165 (63.1 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
L+ VKV + R Q GDK + RHG KG + EDMP+ +G DI++NP +PSR
Sbjct: 1048 LKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSR 1107
Query: 975 MTIGQLIECIMGKVAAHMG 993
M IGQ++E +G A +G
Sbjct: 1108 MNIGQVLEVHLGAAAKGIG 1126
Score = 134 (52.2 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 43/148 (29%), Positives = 74/148 (50%)
Query: 381 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 440
DD DH GN+R+ G + FR+ ++ R VR + + + ++ Q I AK I++
Sbjct: 444 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLNELMPQDLINAKPISA 501
Query: 441 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 496
+K + +SQ +++ S ++H RR+++ P G RE + R
Sbjct: 502 AVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVR 549
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLA 524
+H + +G +CP ETPEG GL+ +LA
Sbjct: 550 DVHPTHYGRLCPIETPEGPNIGLINSLA 577
Score = 103 (41.3 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 45/179 (25%), Positives = 85/179 (47%)
Query: 773 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKEDF 830
L G N +A ++GYN EDS+++++ F ++ + S + K+G+ E+
Sbjct: 795 LALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGS---EEI 851
Query: 831 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQASR 885
D N +G + KLD+ G+ G V G D+++GK TP ++ +E +A
Sbjct: 852 -TADIPN-VG--ESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIF 907
Query: 886 YTR----RDHSISLRHSETGMVDQVLLTTNADGLRFVK--VRVRSVRIPQ----IGDKF 934
+ +D S+ + +S G + V + T DG+ K + + + I Q +G++F
Sbjct: 908 GEKASDVKDSSLRVPNSVKGTIIDVQVFTR-DGVEKDKRAIEIEEMHIAQARKDLGEEF 965
Score = 69 (29.3 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 28/115 (24%), Positives = 52/115 (45%)
Query: 41 LVRQQLDSFDEFI-QNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 99
L+ QLDSF +F Q+ E E+A + P + + + L +P+
Sbjct: 27 LLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIKSFSGNSELQYVSYKLGEPVFDV---- 82
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
K ++R +TYSAPL V + + + V + ++ +V++G +P+M
Sbjct: 83 ------KECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKE-QEVYMGDIPLM 130
Score = 69 (29.3 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 35/128 (27%), Positives = 54/128 (42%)
Query: 168 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYVA 219
KD+ E +G+ P G F+ING+E+V+++Q S + K K Y A
Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174
Query: 220 EV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+ S + + P +FVR+ R +RA L Y EI + + F +
Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATI---ILRA-LEYSTQEI-LDLFFERVE 229
Query: 276 FVADKDIL 283
F KD L
Sbjct: 230 FKIKKDTL 237
Score = 68 (29.0 bits), Expect = 4.2e-44, Sum P(7) = 4.2e-44
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 691 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
A + ++ P I+ V AS+IPF +H+ + R + M +QA+
Sbjct: 648 ASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAV 691
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 181 (68.8 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 998 ATPFTDVTVDNISKALHKCG-YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
ATP D + K L G + +G TGR + +G Y +L H+VDDK
Sbjct: 1183 ATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLNHLVDDK 1242
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 165 (63.1 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
L+ VKV + R Q GDK + RHG KG + EDMP+ G+ DI++NP +PSR
Sbjct: 1048 LKIVKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGVPSR 1107
Query: 975 MTIGQLIECIMGKVAAHMGKE 995
M IGQ++E +G +G++
Sbjct: 1108 MNIGQILETHLGMACRGIGEK 1128
Score = 130 (50.8 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 43/153 (28%), Positives = 75/153 (49%)
Query: 376 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 435
G+ DD DH GN+R+ G + FR+ ++ R VR + + + + Q I A
Sbjct: 439 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLDAIMPQDLINA 496
Query: 436 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGK 491
K I++ +K + +SQ +++ S ++H RR+++ P G RE
Sbjct: 497 KPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISALGPGGLTRERA 544
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
+ R +H + +G +CP ETPEG GL+ +L+
Sbjct: 545 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 577
Score = 100 (40.3 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 44/170 (25%), Positives = 82/170 (48%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 829
+L G N +A ++GYN EDS+++++ F ++ + + K+G+ E+
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHIQELTCIARDTKLGS---EE 850
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQAS 884
D N +G + KLD+ G+ G V+G D+++GK TP ++ +E +A
Sbjct: 851 I-TADIPN-VG--ESALSKLDEAGVVYIGAEVNGGDILVGKVTPKGETQLTPEEKLLRAI 906
Query: 885 RYTR----RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 930
+ +D S+ + +S G + V + T DG V+ R+V I Q+
Sbjct: 907 FGEKAADVKDSSLRVPNSVKGTIIDVQIFTR-DG---VEKDARAVEIEQM 952
Score = 81 (33.6 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 41 LVRQQLDSFDEFIQ-NTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 99
L+ QLDSF +FI + E E+A I P ++ + + L +P+
Sbjct: 27 LLSIQLDSFRKFIDTDPTGETGLEAAFRSIFPIKAYSGSSELQYVSYRLGEPLFDV---- 82
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
K ++R +TYSAPL V + V K V + ++ +V++G++P+M
Sbjct: 83 ------KECQIRGVTYSAPLRVKLRLVVYDKEAAAGTVKDIKE-QEVYMGEIPLM 130
Score = 75 (31.5 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 678 DLVQARLHPE---EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
DLV R E +A A+ + ++ P I+ V AS+IPF +H+ + R S M +QA+
Sbjct: 633 DLVNCRHRNEFILKASAEVQ-YMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAV 691
Score = 66 (28.3 bits), Expect = 6.2e-44, Sum P(7) = 6.2e-44
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 168 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 219
KD+ E +GE P G F+ING+E+V+++Q S + K + + K Y A
Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174
Query: 220 EV----RSMAESQNRPPSTMFVRM 239
V S + + P +FVR+
Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRI 198
Score = 43 (20.2 bits), Expect = 8.8e-14, Sum P(4) = 8.8e-14
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+M R KG S +PY + +P+ IV LG
Sbjct: 1066 KMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLG 1103
Score = 37 (18.1 bits), Expect = 2.2e-25, Sum P(5) = 2.2e-25
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 422 DNGK-DVNLQFAIKAKTITSG 441
DN K D + +F +K + IT G
Sbjct: 1020 DNIKEDFDKKFEVKRRKITQG 1040
Score = 37 (18.1 bits), Expect = 2.2e-25, Sum P(5) = 2.2e-25
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 805 GFFRSLFFRSYRDEEKKMGTL 825
G F +LFF S R + +G +
Sbjct: 384 GLFSNLFFASERYDLSTVGRM 404
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 189 (71.6 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 998 ATPFTDVTVDNISKA-LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
ATP D ++ KA L G T+++G TG + +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 162 (62.1 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
L+ VKV + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR
Sbjct: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
Query: 975 MTIGQLIECIMGKVAAHMG 993
M IGQ++E +G A +G
Sbjct: 1107 MNIGQILEVHLGLAAKGIG 1125
Score = 135 (52.6 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 366 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNG 424
++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 425 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 484
V Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISA 532
Query: 485 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 533 LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 105 (42.0 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKED 829
+L G N +A ++GYN EDS+++++ + F ++ + S + K+G E+
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGA---EE 849
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
D N +G + KLD+ G+ G V G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 96 (38.9 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 43/209 (20%), Positives = 90/209 (43%)
Query: 41 LVRQQLDSFDEFIQNTMQ-EIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 99
L+ QLDSF++FI+ + + E+A + P +N + + L +P+
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDV---- 82
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 159
K ++R +TYS PL V + + K V + ++ +V++G++P+M +
Sbjct: 83 ------KECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKE-QEVYMGEIPLMTENGT 135
Query: 160 CTLYQNSEKDLTELGECP--YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 217
+ +++L P + + S KVL + ++ + P Y
Sbjct: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLY 195
Query: 218 VAEVRSMAESQNRPPSTMFVRMLSRTSAK 246
V + + + P+++ +R L +TSA+
Sbjct: 196 VR-----IDRRRKLPASIILRALGKTSAE 219
Score = 68 (29.0 bits), Expect = 6.1e-41, Sum P(6) = 6.1e-41
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 168 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 219
KD+ E +GE P + G F+ING+E+V+++Q S + K + + K Y A
Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
Query: 220 EV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+ S + + P ++VR + R R ++P I+ RALG
Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVR-IDR-------------------RRKLPASIILRALG 214
Query: 276 FVADK--DIL-EHICYDFQD-TQMMELL 299
+ + DI E + ++ +D T MMEL+
Sbjct: 215 KTSAEILDIFFEKVNFEVKDQTLMMELV 242
Score = 67 (28.6 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 681 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
++ LHP E + D + ++ + ++ + AS+IPF +H+ + R + M +QA+
Sbjct: 641 ESGLHPRE-HVD---YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 38 (18.4 bits), Expect = 6.8e-38, Sum P(6) = 6.8e-38
Identities = 37/190 (19%), Positives = 74/190 (38%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDG 98
+ L + + D F + E+ D++ +E+ PE G+ + F +I + E G
Sbjct: 211 RALGKTSAEILDIFFEKVNFEVKDQTLMMELVPERLR--GETATF-DIEADGKVYVEK-G 266
Query: 99 ETATLFPKAARLRNLTYSAPLYVDV-TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
T A +R L +++V + ++ K + V E + I L +
Sbjct: 267 RRVT----ARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNEATG-ELIITANQEISLEA 321
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 217
L Q K L L D G + ++ + +V +++S V +++ +P +
Sbjct: 322 -LANLSQAGYKKLEVLFTNDLDHGPF--MSETLRVDSTTDRISAL-VEIYRMMRPGEPPT 377
Query: 218 VAEVRSMAES 227
S+ ES
Sbjct: 378 KEAAESLFES 387
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 189 (71.6 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 998 ATPFTDVTVDNISKA-LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
ATP D ++ KA L G T+++G TG + +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 162 (62.1 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
L+ VKV + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR
Sbjct: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
Query: 975 MTIGQLIECIMGKVAAHMG 993
M IGQ++E +G A +G
Sbjct: 1107 MNIGQILEVHLGLAAKGIG 1125
Score = 135 (52.6 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 366 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNG 424
++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 425 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 484
V Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISA 532
Query: 485 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 533 LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 105 (42.0 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKED 829
+L G N +A ++GYN EDS+++++ + F ++ + S + K+G E+
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGA---EE 849
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
D N +G + KLD+ G+ G V G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 96 (38.9 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 43/209 (20%), Positives = 90/209 (43%)
Query: 41 LVRQQLDSFDEFIQNTMQ-EIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 99
L+ QLDSF++FI+ + + E+A + P +N + + L +P+
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFDV---- 82
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 159
K ++R +TYS PL V + + K V + ++ +V++G++P+M +
Sbjct: 83 ------KECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKE-QEVYMGEIPLMTENGT 135
Query: 160 CTLYQNSEKDLTELGECP--YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 217
+ +++L P + + S KVL + ++ + P Y
Sbjct: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLY 195
Query: 218 VAEVRSMAESQNRPPSTMFVRMLSRTSAK 246
V + + + P+++ +R L +TSA+
Sbjct: 196 VR-----IDRRRKLPASIILRALGKTSAE 219
Score = 68 (29.0 bits), Expect = 6.1e-41, Sum P(6) = 6.1e-41
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 168 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 219
KD+ E +GE P + G F+ING+E+V+++Q S + K + + K Y A
Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
Query: 220 EV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+ S + + P ++VR + R R ++P I+ RALG
Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVR-IDR-------------------RRKLPASIILRALG 214
Query: 276 FVADK--DIL-EHICYDFQD-TQMMELL 299
+ + DI E + ++ +D T MMEL+
Sbjct: 215 KTSAEILDIFFEKVNFEVKDQTLMMELV 242
Score = 67 (28.6 bits), Expect = 8.6e-44, Sum P(6) = 8.6e-44
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 681 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
++ LHP E + D + ++ + ++ + AS+IPF +H+ + R + M +QA+
Sbjct: 641 ESGLHPRE-HVD---YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 38 (18.4 bits), Expect = 6.8e-38, Sum P(6) = 6.8e-38
Identities = 37/190 (19%), Positives = 74/190 (38%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDG 98
+ L + + D F + E+ D++ +E+ PE G+ + F +I + E G
Sbjct: 211 RALGKTSAEILDIFFEKVNFEVKDQTLMMELVPERLR--GETATF-DIEADGKVYVEK-G 266
Query: 99 ETATLFPKAARLRNLTYSAPLYVDV-TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRS 157
T A +R L +++V + ++ K + V E + I L +
Sbjct: 267 RRVT----ARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNEATG-ELIITANQEISLEA 321
Query: 158 SYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 217
L Q K L L D G + ++ + +V +++S V +++ +P +
Sbjct: 322 -LANLSQAGYKKLEVLFTNDLDHGPF--MSETLRVDSTTDRISAL-VEIYRMMRPGEPPT 377
Query: 218 VAEVRSMAES 227
S+ ES
Sbjct: 378 KEAAESLFES 387
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 249 (92.7 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 72/237 (30%), Positives = 115/237 (48%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK--KMGTLVKED 829
++ G N +VAI + G+N ED++I++ ++ S+ + + + K+G E+
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGA---EE 759
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 880
R D N + LD+ G+ G V D+++GK TP + E
Sbjct: 760 ITR-DIPN---VSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAI 815
Query: 881 -GQASRYTRRDHSISLRHSETGMVDQVLLTTNAD------GLR-FVKVRVRSVRIPQIGD 932
G+ +R R D S+ + H E+G V + + + D G+ V+V V R GD
Sbjct: 816 FGEKAREVR-DTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGD 874
Query: 933 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 989
K + RHG KG +G EDMP+ +G DII+N H +P RM IGQ++E +G VA
Sbjct: 875 KLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVA 931
Score = 191 (72.3 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 42/99 (42%), Positives = 62/99 (62%)
Query: 1022 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1081
G T+++G +G + +G Y +L H+VDDKIH+R GP ++T+QP G+++ GG
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1056
Query: 1082 LRFGEMERDCMIAHGASHFLKERLFDQSD--AYRVHVCE 1118
RFGEME M A+GA++ L+E L +SD RV V E
Sbjct: 1057 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1095
Score = 148 (57.2 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 381 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 440
DD DH+GN+RL G L+ R+ ++ R VR + + + + Q I + + +
Sbjct: 359 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 416
Query: 441 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 496
+K T +SQ +++ S L+H RRL++ P G RE + R
Sbjct: 417 AIKEFFGTSQ------------LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVR 464
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 531
+H S +G MCP ETPEG GL+ +L+ VY V
Sbjct: 465 DVHPSHYGRMCPIETPEGPNIGLIGSLS--VYARV 497
Score = 61 (26.5 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 691 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
AD + ++ P ++ V ++IPF +H+ + R + M +QA+
Sbjct: 564 ADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Score = 56 (24.8 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 173 LGECPY-DQGGYFIINGSEKVLIAQ 196
+G+ P + G FIING+E+V+++Q
Sbjct: 145 MGDFPMMTEKGTFIINGTERVVVSQ 169
Score = 56 (24.8 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 111 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 170
+++TY+APL+V T I + GE ++T VF+G P+M + +
Sbjct: 116 KDMTYAAPLFV--TAEFINN-NTGEIKSQT-----VFMGDFPMMTEKGTFIINGTERVVV 167
Query: 171 TELGECPYDQGGYF---IINGSEKVL 193
++L P G YF I +EK L
Sbjct: 168 SQLVRSP---GVYFDETIDKSTEKTL 190
Score = 47 (21.6 bits), Expect = 6.8e-32, Sum P(4) = 6.8e-32
Identities = 32/132 (24%), Positives = 54/132 (40%)
Query: 179 DQGGYFIINGSEKVLIAQEKMSTNH--------VYVFKKRQPNKYAYVAEVRSMAESQNR 230
DQ Y + ++ ++AQ T+ V V KK ++ +V M S +
Sbjct: 517 DQIDYLTADEEDRHVVAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQ 576
Query: 231 PPS--TMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPII---IVFRAL---G--FVAD 279
S T + L A G + R +P +R+E P++ + RA G VAD
Sbjct: 577 MVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAD 636
Query: 280 KD-ILEHICYDF 290
K ++E + D+
Sbjct: 637 KTGVIEEVSADY 648
Score = 37 (18.1 bits), Expect = 1.8e-43, Sum P(6) = 1.8e-43
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 302 SLEEAFVIQNQQVALDY-IGKRGATVGVTRDKRIKYAKEILQKEM 345
+L VI + L++ + KR TVGV D++ + +L K +
Sbjct: 189 TLHSVKVIPGRGAWLEFDVDKRD-TVGVRIDRKRRQPVTVLLKAL 232
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 307 (113.1 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 83/229 (36%), Positives = 116/229 (50%)
Query: 695 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 754
TH E+ P IL V A++IPF DHNQSPRN YQ MGKQ MG V NY+ R D Y+L+
Sbjct: 547 THQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHT 606
Query: 755 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 814
PQ PLV R ++ P G N++VA+ YSGY+ ED++I+N+SS +RGF +
Sbjct: 607 PQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGF-------A 659
Query: 815 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 871
Y K + R + G+R G +KLD DGL G+ + D
Sbjct: 660 YGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGD------ 713
Query: 872 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVK 919
P + T ++ ++ E G+VD + L +N G +F K
Sbjct: 714 -PF-----YSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKK 756
Score = 240 (89.5 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 104/404 (25%), Positives = 172/404 (42%)
Query: 148 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEK----MS 200
+G VPIM++S C LY S ++L + E + GGYFIING EKV LI +
Sbjct: 22 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAM 81
Query: 201 TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 260
T H + K R P Y + + + + + M G +I +
Sbjct: 82 TRHKW--KNRGPGFTEYGVVMHCVKDEHSA------INMNLHYLENGCVMVNFIFQKELF 133
Query: 261 IRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMM----ELLRPSLEEAFVIQNQQVA 315
+P+ +AL D I E + D + DT + E+LR ++ EA Q V
Sbjct: 134 F---LPLGFALKALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLR-AVAEAGCYTQQNV- 188
Query: 316 LDYIGKR-GATVGVTRDKRIKYAKE-ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 373
L+Y+GK + + + A + I K + H+ T+K Y + +L
Sbjct: 189 LEYLGKSFRVKLNLPEWYSNEQAADFIFNKCICIHLTD----RTEKFYLLCMMTRKLCAF 244
Query: 374 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-DVNLQFA 432
A G ED+ D N+ + AG L + + V+ ++K + ++N
Sbjct: 245 AKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSL 304
Query: 433 IKA----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPI 486
+KA +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 305 MKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGS 364
Query: 487 G-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
+ + R+L WG +CP +TP+G+ CGL+ ++ + I
Sbjct: 365 AFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI 408
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 197 (74.4 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 47/124 (37%), Positives = 70/124 (56%)
Query: 998 ATPFTDVTVD-NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
A P + D IS+ L G +Y+G +G++ + +G Y +L H+VDDK
Sbjct: 1215 AAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDK 1274
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY--RV 1114
IH+R GP ++T+QP G+S GG RFGEME + A+GA++ L+E L +SD RV
Sbjct: 1275 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDIVGRV 1334
Query: 1115 HVCE 1118
+ E
Sbjct: 1335 RIYE 1338
Score = 161 (61.7 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 55/193 (28%), Positives = 92/193 (47%)
Query: 365 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDN 423
++I +L+L G DD DH GN+R+ G + FR+ +L R + Y+ DN
Sbjct: 452 HVIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFIENQFRVGILRLERMIMDYMSSVNFDN 511
Query: 424 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
V F + K + + LK ++ +SQ +++ S ++H RRL+
Sbjct: 512 A--VPCDF-VNPKILATVLKDFFSSSQ------------LSQFMDQTNPLSEVTHKRRLS 556
Query: 484 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-VGSAAYPI 538
+ P G RE + R +H + +G +CP ETPEGQ GL+ +LA+ I G P
Sbjct: 557 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIESPY 616
Query: 539 LEFLEEWGTENFE 551
+ ++ T++ E
Sbjct: 617 RKVIDGVVTDSVE 629
Score = 154 (59.3 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
L VKV V Q GDK + RHG KG + EDMP +G DII+N +PSR
Sbjct: 1078 LTIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSR 1137
Query: 975 MTIGQLIECIMGKVAAHMG 993
M IGQ++E +G A ++G
Sbjct: 1138 MNIGQILETHLGWAAVNLG 1156
Score = 113 (44.8 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 831
+L G N +VA + GYN EDS++++ + R F S+ + + L E
Sbjct: 817 ELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHIEEFECVVRDT-PLGPEKIM 875
Query: 832 R--PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
R PD N + H LDD G+ G VS V++GK TP
Sbjct: 876 RSVPD-VNEESLSH-----LDDVGIVNIGAEVSAGSVLVGKVTP 913
Score = 67 (28.6 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 696 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
+ ++ P I+ V AS+IPF ++N + R S M +QA+
Sbjct: 677 YIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 715
Score = 53 (23.7 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 167 EKDLTELGECPYDQG-GYFIINGSEKVLIAQ 196
E++++ +G+ P G FIING E+V+++Q
Sbjct: 143 EQEVS-IGDLPMMTSYGTFIINGIERVIVSQ 172
Score = 40 (19.1 bits), Expect = 1.2e-42, Sum P(7) = 1.2e-42
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 41 LVRQQLDSFDEFI 53
L+R Q DS+D FI
Sbjct: 37 LIRIQRDSYDAFI 49
Score = 40 (19.1 bits), Expect = 2.8e-29, Sum P(6) = 2.8e-29
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 600 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 631
V+++ KE++ D G R + +++Q + I
Sbjct: 117 VQEVSFKEVKYVVDEGTLERSVKYMKEQEVSI 148
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+M R KG S +P++ P+ I+ +LG
Sbjct: 1096 KMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLG 1133
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 219 (82.2 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 998 ATPFTDVTVD-NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
ATP D + +++ AL + G+ G +++G TG + + +G Y +L H+VDDK
Sbjct: 1215 ATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDK 1274
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD--AYRV 1114
IH+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD A R
Sbjct: 1275 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT 1334
Query: 1115 HVCE 1118
V E
Sbjct: 1335 KVYE 1338
Score = 165 (63.1 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
++ VKV + R Q GDK + RHG KG + EDMP+ +G D +NP +PSR
Sbjct: 1079 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSR 1138
Query: 975 MTIGQLIECIMGKVAAHMGKEGD 997
M +GQ++E MG A +G D
Sbjct: 1139 MNVGQILETHMGWAARGLGLNVD 1161
Score = 133 (51.9 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 44/154 (28%), Positives = 74/154 (48%)
Query: 376 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNGKDVNLQFAIK 434
G+ DD DH GN+R+ G L+ +R+ ++ R ++ + +D V Q I
Sbjct: 458 GKGDIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDT---VMPQDLIN 514
Query: 435 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REG 490
AK + ++ + +SQ +++ S ++H RRL++ P G RE
Sbjct: 515 AKPAAAAVREFFGSSQ------------LSQFMDQTNPLSEVTHKRRLSALGPGGLTRER 562
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
+ R +H + +G MCP ETPEG GL+ +LA
Sbjct: 563 AGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLA 596
Score = 101 (40.6 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 30/104 (28%), Positives = 51/104 (49%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 829
+L G N +VA ++GYN EDS+++++ F S+ + + K+G E+
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEFEVAARDTKLGP---EE 868
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
R D N +G + LD+ G+ G V D+++GK TP
Sbjct: 869 ITR-DIPN-VGEE--ALRNLDEAGIVYIGAEVQPGDILVGKITP 908
Score = 63 (27.2 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 677 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
N+LV R + A ++ ++ P ++ V AS+IPF +++ + R S M +QA+
Sbjct: 651 NELVNTRQAGDYTLAPMESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAV 710
Score = 60 (26.2 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 166 SEKDLTE----LGECPY-DQGGYFIINGSEKVLIAQ 196
S KD+ E +G+ P G FI+NG+E+V+++Q
Sbjct: 119 SVKDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQ 154
Score = 58 (25.5 bits), Expect = 2.2e-42, Sum P(6) = 2.2e-42
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 111 RNLTYSAPLYVDVTKRVIKKGHD-GEEVTETQDFTKVFIGKVPIM 154
R++TYSAPL V + V D G + + VF+G +P+M
Sbjct: 92 RDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVFMGDMPLM 136
Score = 40 (19.1 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 704 ILGVCASIIPFPDHNQS 720
I+GV S+ P D N++
Sbjct: 53 IMGVFQSVFPIKDFNET 69
Score = 37 (18.1 bits), Expect = 3.0e-40, Sum P(6) = 3.0e-40
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 289 DFQDTQMMELLRPSLEE 305
DF +T ++E ++ LE+
Sbjct: 65 DFNETSVLEFVKYELEK 81
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 198 (74.8 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 43/114 (37%), Positives = 67/114 (58%)
Query: 998 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1056
A+P F + + I L K G+ ++Y+G +G + +G Y +L H+VDDK
Sbjct: 1208 ASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDK 1267
Query: 1057 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
IH+R GP ++T+QP G+++ GG R GEME M A+GA++ L+E L +SD
Sbjct: 1268 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1321
Score = 170 (64.9 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 915 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
++ VKV + R Q+GDK + RHG KG V +EDMP+ +G +I++NP +PSR
Sbjct: 1075 IKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSR 1134
Query: 975 MTIGQLIECIMGKVAAHMG 993
M +GQ++E +G A +G
Sbjct: 1135 MNVGQILETHLGWAAKGIG 1153
Score = 130 (50.8 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 46/165 (27%), Positives = 83/165 (50%)
Query: 366 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV--RAYVQKCVDN 423
++ L+ G+ DD DH GN+R+ G LL +R+ ++ R + R +Q+ V+N
Sbjct: 436 VVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQE-VEN 494
Query: 424 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
+L I +K +++ +K + +SQ +++ S ++H RRL+
Sbjct: 495 LMPHDL---INSKPVSAVVKEFFGSSQ------------LSQFMDQTNPLSEVTHKRRLS 539
Query: 484 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 524
+ P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLS 584
Score = 104 (41.7 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 829
+L G N +VA + GYN EDS+++++ + + S+ + + K+G KE+
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLG---KEE 857
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 873
S+ + + LD+ G+ G V D+++GK TP
Sbjct: 858 I----TSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITP 897
Score = 76 (31.8 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 67/296 (22%), Positives = 121/296 (40%)
Query: 67 IEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE--TATL-FPK----AARLRNLTYSAPL 119
I+ PE++ N G ++ F ++ K + E T TL PK R +T++AP+
Sbjct: 41 IDTPPEARKNSGLEAVFKSVFPIKDFSDTASLEYVTYTLGAPKYDVEECHQRGMTFAAPM 100
Query: 120 YVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 177
V V V + K + + ++ +V+ G++P+M TE
Sbjct: 101 KVKVRLVVWDVNKDTGVRSIRDIKE-QEVYFGEIPLM----------------TE----- 138
Query: 178 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVAEV---R-SMAESQNR 230
G FIING+E+V+++Q S Y K + + K Y A V R S + +
Sbjct: 139 ---NGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWLDFEFD 195
Query: 231 PPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 286
+FVR+ R + G A L Y I++ + AD ++L
Sbjct: 196 HKDILFVRIDRRRKMPATVLLKALGYSAEALLNYFYKSEEILVAAEGMWKKADPELLA-- 253
Query: 287 CYDFQDTQMMELLRPSLEEAFVIQNQQ---VALDYIGKRGAT-VGVTRDKRI-KYA 337
++++ P E + N++ A+ + + G T + +T ++ + KYA
Sbjct: 254 ----SQKASVDIVAPKTGEVLLKANRKFTKAAIRKMTEHGITQIPITMEEVLGKYA 305
Score = 63 (27.2 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 677 NDLVQARLHPEE--AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
N+ V AR E + D ++ P ++ V AS+IPF +++ + R S M +QA+
Sbjct: 639 NEYVSARKSGEFLLVHRDELELMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAV 698
Score = 50 (22.7 bits), Expect = 5.5e-31, Sum P(5) = 5.5e-31
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 592 DVNTEVGVVRDIR-LKELRIYTDYGRCSRPLFIVEKQRLLIKKRD-IIALQQRESPEDGG 649
DVN + GV R IR +KE +Y +G PL + E +I + +I Q SP G
Sbjct: 110 DVNKDTGV-RSIRDIKEQEVY--FGEI--PL-MTENGTFIINGTERVIVSQLHRSP--GV 161
Query: 650 WHD 652
++D
Sbjct: 162 FYD 164
Score = 41 (19.5 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+M R KG S +PY+ P+ IV LG
Sbjct: 1093 KMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLG 1130
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 199 (75.1 bits), Expect = 1.5e-40, Sum P(6) = 1.5e-40
Identities = 44/113 (38%), Positives = 64/113 (56%)
Query: 998 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1057
A+ F D I + L G G E +Y+G TG + + +G Y +L H+V+DKI
Sbjct: 1183 ASVFEGPKTDEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKI 1242
Query: 1058 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1110
H+R G ++T+QP G+S GG RFGEME + A+GA+ L+E L +SD
Sbjct: 1243 HARSIGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSD 1295
Score = 177 (67.4 bits), Expect = 1.5e-40, Sum P(6) = 1.5e-40
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 912 ADG-LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 970
A G L VKV V Q GDK S RHG KG + EDMP+ +G DII+NP
Sbjct: 1045 AQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLG 1104
Query: 971 IPSRMTIGQLIECIMGKVAAHMGKE 995
+PSRM +GQ++E +G A ++GK+
Sbjct: 1105 VPSRMNVGQILETHLGWAAYNLGKK 1129
Score = 119 (46.9 bits), Expect = 1.5e-40, Sum P(6) = 1.5e-40
Identities = 38/153 (24%), Positives = 74/153 (48%)
Query: 381 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 440
DD DH GN+R+ G + FR+ ++ + + V+N + + + I S
Sbjct: 439 DDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVI-------VENMATADFDTVMPCEMINS 491
Query: 441 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG-REGKLA-KPR 496
+ ++ + ++A +SQ +++ S ++H RR+++ P G G+ + R
Sbjct: 492 KILGAVIR-EFFMSSA------LSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGFEVR 544
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
+H + +G +C ETPEG GL+ +LA+ I
Sbjct: 545 DVHTTHYGRICATETPEGATIGLINSLAIYAKI 577
Score = 109 (43.4 bits), Expect = 1.5e-40, Sum P(6) = 1.5e-40
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 831
+L G N +VA + GYN EDSV+++ + + F S+ + + L E+
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDT-RLGPEEIT 843
Query: 832 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 875
R D S G+ LD+ G+A G V DV++GK TP S
Sbjct: 844 R-DVS---GVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKS 883
Score = 60 (26.2 bits), Expect = 1.5e-40, Sum P(6) = 1.5e-40
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 677 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
+DLV R + E + ++ I+ V AS+IPF +++ + R S M +QA+
Sbjct: 627 DDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVAASLIPFLENDDANRALMGSNMQRQAV 686
Score = 58 (25.5 bits), Expect = 1.5e-40, Sum P(6) = 1.5e-40
Identities = 32/125 (25%), Positives = 53/125 (42%)
Query: 168 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 222
KD+ E +G+ P + G FIING E+V+++Q H R P + + R
Sbjct: 115 KDVREQEIYMGDIPIMSKNGTFIINGVERVVVSQM-----H------RAPGVFFDNDKAR 163
Query: 223 SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 282
S++ N + R Y R + ++P+ + RALG +++KDI
Sbjct: 164 SISGKLNYIARIIPYRGSWLDFEFDAKDVLYFRIDK---KRKLPVTFLLRALG-LSNKDI 219
Query: 283 LEHIC 287
C
Sbjct: 220 FAQFC 224
Score = 54 (24.1 bits), Expect = 5.7e-34, Sum P(6) = 5.7e-34
Identities = 33/138 (23%), Positives = 54/138 (39%)
Query: 316 LDYIGKRGA-TVGVTRDKRIKYAKEILQKEMLPHVGTGDF-----CETKKAYYFGYIIHR 369
+D++G R +VG D + + + K ++ ++ T DF CE + G +I
Sbjct: 441 IDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADFDTVMPCEMINSKILGAVIRE 500
Query: 370 LLLCALGRRAEDDRDHYGN----KRLDLAGPLLGGLFRMLFRKLTRDVRA--YVQKCVDN 423
+ + + D + +R+ GP GGL R RDV Y + C
Sbjct: 501 FFMSSALSQFMDQTNPLSEITHKRRISALGP--GGLNRGRAGFEVRDVHTTHYGRICATE 558
Query: 424 ---GKDVNL--QFAIKAK 436
G + L AI AK
Sbjct: 559 TPEGATIGLINSLAIYAK 576
Score = 53 (23.7 bits), Expect = 4.7e-40, Sum P(6) = 4.7e-40
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 111 RNLTYSAPLYVDVTKRVI---KKGHDGEEVTETQDFTK------VFIGKVPIMLRS 157
R +TYSAPL + + V+ + +G E T+ K +++G +PIM ++
Sbjct: 79 RGITYSAPLRA-ILRLVVFGDETSGEGSEGVSTEPAVKDVREQEIYMGDIPIMSKN 133
Score = 44 (20.5 bits), Expect = 6.2e-39, Sum P(6) = 6.2e-39
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 633 KRDIIALQQRESPEDG-GWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYA 691
+R + L E+P G G VA+G N +V A ++ +
Sbjct: 682 QRQAVPLIMPEAPLVGTGMEGYVARGSGAVIVAKRAGVVQYIDARN-IVVASESKDDFWI 740
Query: 692 DTYTHCEIHPS 702
D+YT C+ S
Sbjct: 741 DSYTLCKFRKS 751
Score = 40 (19.1 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275
+M R KG S +PY+ P+ I+ LG
Sbjct: 1067 KMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLG 1104
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 388 (141.6 bits), Expect = 1.0e-34, P = 1.0e-34
Identities = 83/219 (37%), Positives = 134/219 (61%)
Query: 729 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 788
MGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSG
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 789 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 848
Y+ ED++++N++S+DRGF R L +++ + K+ + P ++
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEI 120
Query: 849 LDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMV 903
LD DG+ PG +V + V++ K+ P ++Q +G Q +Y +D I+ + + +
Sbjct: 121 LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYI 178
Query: 904 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 942
++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 179 EKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 301 (111.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1027
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1028 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1082
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1083 RFGEMERDCMIAHGASHFLKERLFDQSD 1110
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 1.7e-21, Sum P(4) = 1.7e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 829
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 885
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 886 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 937
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 938 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 997
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 998 ATPFTDVTVDNISKAL 1013
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 440 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 495
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 544
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 699 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 55 (24.4 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 40 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY-LSKPMMTESDG 98
G + Q + F FI + E +++ I+ + H Q FA+ Y L +P + E D
Sbjct: 14 GFSQIQFEGFCRFINQGLAEELEKFPTIK---DPDHEISFQL-FAKGYQLLEPSIKERD- 68
Query: 99 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
A +LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 69 ---------AVYESLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 48 (22.0 bits), Expect = 9.4e-30, Sum P(4) = 9.4e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 167 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 205
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 301 (111.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1027
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1028 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1082
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1083 RFGEMERDCMIAHGASHFLKERLFDQSD 1110
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 1.7e-21, Sum P(4) = 1.7e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 829
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 885
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 886 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 937
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 938 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 997
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 998 ATPFTDVTVDNISKAL 1013
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 440 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 495
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 544
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 699 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 55 (24.4 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 40 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY-LSKPMMTESDG 98
G + Q + F FI + E +++ I+ + H Q FA+ Y L +P + E D
Sbjct: 14 GFSQIQFEGFCRFINQGLAEELEKFPTIK---DPDHEISFQL-FAKGYQLLEPSIKERD- 68
Query: 99 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
A +LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 69 ---------AVYESLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 48 (22.0 bits), Expect = 9.4e-30, Sum P(4) = 9.4e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 167 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 205
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 301 (111.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1027
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1028 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1082
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1083 RFGEMERDCMIAHGASHFLKERLFDQSD 1110
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 1.7e-21, Sum P(4) = 1.7e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 829
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 885
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 886 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 937
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 938 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 997
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 998 ATPFTDVTVDNISKAL 1013
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 440 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 495
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 544
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 699 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 55 (24.4 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 40 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY-LSKPMMTESDG 98
G + Q + F FI + E +++ I+ + H Q FA+ Y L +P + E D
Sbjct: 14 GFSQIQFEGFCRFINQGLAEELEKFPTIK---DPDHEISFQL-FAKGYQLLEPSIKERD- 68
Query: 99 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
A +LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 69 ---------AVYESLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 48 (22.0 bits), Expect = 9.4e-30, Sum P(4) = 9.4e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 167 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 205
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 301 (111.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1027
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1028 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1082
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1083 RFGEMERDCMIAHGASHFLKERLFDQSD 1110
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 1.7e-21, Sum P(4) = 1.7e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 772 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 829
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 885
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 886 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 937
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 938 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 997
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 998 ATPFTDVTVDNISKAL 1013
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 439
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 440 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 495
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 544
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 699 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 734
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 55 (24.4 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 40 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY-LSKPMMTESDG 98
G + Q + F FI + E +++ I+ + H Q FA+ Y L +P + E D
Sbjct: 14 GFSQIQFEGFCRFINQGLAEELEKFPTIK---DPDHEISFQL-FAKGYQLLEPSIKERD- 68
Query: 99 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 154
A +LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 69 ---------AVYESLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 48 (22.0 bits), Expect = 9.4e-30, Sum P(4) = 9.4e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 167 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 205
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 283 (104.7 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 75/226 (33%), Positives = 116/226 (51%)
Query: 756 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS- 814
Q PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S
Sbjct: 103 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 162
Query: 815 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 871
+ D +K +K+ D S G++ G KLDDDGL G ++ D
Sbjct: 163 FIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSY- 213
Query: 872 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIP 928
++ + + Y +++ + VD + + +N G + V + +R R P
Sbjct: 214 --LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCITMRVPRNP 262
Query: 929 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 974
IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSR
Sbjct: 263 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSR 308
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 251 (93.4 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 109/423 (25%), Positives = 175/423 (41%)
Query: 776 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 835
G N +V Y GY ED++I+++ + + SL Y E + + +
Sbjct: 600 GNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIY---EISLNII--NNIPEICS 654
Query: 836 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--P-ISQDEAQ--------GQAS 884
N M + + LD G+ GT + +++I K P I +++ G
Sbjct: 655 INLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFLFGSKL 714
Query: 885 RYTRRDHSISLRHSETGMVDQVLLTTN------ADGLRFVKVRVRS--VRIPQIGDKFSS 936
R + IS H + G V ++ + N ++K R+ + Q+GDK +
Sbjct: 715 RIFKNKPIISTIH-DIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICN 773
Query: 937 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
RHG KG + D+P+ I PDI ++ +IPSR+ IGQ+ E I G + ++
Sbjct: 774 RHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRY 833
Query: 997 ------DATPFTDVT-VDNISKALHKCGYQMRG-----FETMY--NGHTGRRLTAMIFLG 1042
+ + + + N K + + + + Y N TG + I L
Sbjct: 834 IISNNLNKNYYNNYNHIFNYYKYNYNNNFNINSKMSYNYNKYYLKNPFTGNMINNSICLN 893
Query: 1043 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1102
YY +L HM+ DK R G LT+QP +G ++ GG RFGEME + A GAS+ K
Sbjct: 894 NIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGASYLFK 953
Query: 1103 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1162
E +SD + LK F N I I KL+ +EL +
Sbjct: 954 EFFTYKSDDIKSRKI----------LKNYLF------NNYKIKNTFISETFKLILKELQS 997
Query: 1163 MAI 1165
+AI
Sbjct: 998 LAI 1000
Score = 50 (22.7 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 704 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI-Y------VTNYQFRMDT-LAYVLYYP 755
+L ++IPF +N S RN M Q + I Y +TNY F ++ L +++
Sbjct: 470 LLSFIENLIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISY 529
Query: 756 QKPLV 760
Q+ +V
Sbjct: 530 QEGIV 534
Score = 49 (22.3 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 496 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 531
R+L + G + T EG CGLV L +++ +
Sbjct: 360 RELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNL 395
Score = 38 (18.4 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 397 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 427
+L GL++ + ++ + ++ K +N K++
Sbjct: 110 ILNGLYKTCIQLFKKNNKIFIIKFKNNNKNI 140
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 188 (71.2 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 52/154 (33%), Positives = 80/154 (51%)
Query: 274 LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGATV----G 327
+G +D++I++ I + +M PSLEE Q Q AL YIG + G
Sbjct: 1 MGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG 57
Query: 328 VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 387
+ +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YG
Sbjct: 58 GPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYG 116
Query: 388 NKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 421
NKRL+LAG LL LF LF+K +++ + +
Sbjct: 117 NKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVI 150
>UNIPROTKB|C9JZW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007644 InterPro:IPR015712 Pfam:PF04563
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 HGNC:HGNC:9188 IPI:IPI00894524
ProteinModelPortal:C9JZW8 SMR:C9JZW8 STRING:C9JZW8
Ensembl:ENST00000433463 ArrayExpress:C9JZW8 Bgee:C9JZW8
Uniprot:C9JZW8
Length = 76
Score = 171 (65.3 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 31/51 (60%), Positives = 43/51 (84%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE 70
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 151 (58.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 953 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1012
MP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F V ++ +
Sbjct: 1 MPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCED 60
Query: 1013 LHKCGYQMRGFETMYNGHTG 1032
L + GY G + + +G TG
Sbjct: 61 LVRHGYNYLGKDYVTSGITG 80
>UNIPROTKB|C9JMN3 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] InterPro:IPR007644
InterPro:IPR015712 Pfam:PF04563 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:AC069307 GO:GO:0032549
HGNC:HGNC:9188 IPI:IPI00894248 ProteinModelPortal:C9JMN3 SMR:C9JMN3
STRING:C9JMN3 Ensembl:ENST00000450656 ArrayExpress:C9JMN3
Bgee:C9JMN3 Uniprot:C9JMN3
Length = 64
Score = 141 (54.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62
>UNIPROTKB|F8VRS3 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR015712 PANTHER:PTHR20856 GO:GO:0006351
GO:GO:0003899 EMBL:AC009721 GO:GO:0032549 EMBL:AC078992
EMBL:AC080012 HGNC:HGNC:30348 IPI:IPI01021275
ProteinModelPortal:F8VRS3 SMR:F8VRS3 Ensembl:ENST00000549195
ArrayExpress:F8VRS3 Bgee:F8VRS3 Uniprot:F8VRS3
Length = 54
Score = 115 (45.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 366 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 1 MVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 48
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1186 1136 0.00091 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 95
No. of states in DFA: 625 (66 KB)
Total size of DFA: 498 KB (2232 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 90.11u 0.09s 90.20t Elapsed: 00:00:05
Total cpu time: 90.17u 0.09s 90.26t Elapsed: 00:00:05
Start: Thu May 9 22:28:17 2013 End: Thu May 9 22:28:22 2013