BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001021
(1186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 2338 bits (6059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1134/1194 (94%), Positives = 1162/1194 (97%), Gaps = 14/1194 (1%)
Query: 2 MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
MED+Y + Q +D+EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 MEDEY----EPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 62 DESADIEIRPESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFPKAARLRN 112
DESADIEIRPESQHNPG QSDFAE IYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 59 DESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRN 118
Query: 113 LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 172
LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE
Sbjct: 119 LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 178
Query: 173 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 232
LGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPP
Sbjct: 179 LGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPP 238
Query: 233 STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 292
STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF D
Sbjct: 239 STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFND 298
Query: 293 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 352
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G
Sbjct: 299 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG 358
Query: 353 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 412
++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
Sbjct: 359 EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 418
Query: 413 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 472
VR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
Sbjct: 419 VRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 478
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
Sbjct: 479 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 538
Query: 533 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 592
SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TLRRLRRRVD
Sbjct: 539 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVD 598
Query: 593 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 652
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKK+DI LQQRESP++GGWHD
Sbjct: 599 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHD 658
Query: 653 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 712
LVAKG+IEYIDTEEEETTMISMTINDLVQARL+P +AY+DTYTHCEIHPSLILGVCASII
Sbjct: 659 LVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASII 718
Query: 713 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 772
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 719 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 778
Query: 773 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 832
LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
Sbjct: 779 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 838
Query: 833 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 892
PDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQASRYTR+DHS
Sbjct: 839 PDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHS 898
Query: 893 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 952
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 899 TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 958
Query: 953 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1012
MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
Sbjct: 959 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1018
Query: 1013 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1072
LHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
Sbjct: 1019 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1078
Query: 1073 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1132
AEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNS
Sbjct: 1079 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 1138
Query: 1133 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1186
FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKKGA
Sbjct: 1139 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKLAKDQKKKGA 1191
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 2307 bits (5978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1109/1175 (94%), Positives = 1140/1175 (97%), Gaps = 9/1175 (0%)
Query: 7 DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
+YE + Q E+D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD
Sbjct: 5 EYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 64
Query: 67 IEIRPESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFPKAARLRNLTYSA 117
IEIRPESQHNPG QSDFAE IYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 65 IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 124
Query: 118 PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 177
PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 125 PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 184
Query: 178 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 237
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFV
Sbjct: 185 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFV 244
Query: 238 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 297
RML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMME
Sbjct: 245 RMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMME 304
Query: 298 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 357
LLRPSLEEAFVIQNQ VALDYIGKRGATVGVT++KRIKYA++ILQKEMLPHVG G+ CET
Sbjct: 305 LLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCET 364
Query: 358 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 417
KKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 365 KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 424
Query: 418 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 477
QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 425 QKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484
Query: 478 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 537
HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP
Sbjct: 485 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544
Query: 538 ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 597
ILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLRRRVDVNTEV
Sbjct: 545 ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEV 604
Query: 598 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 657
GVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKG
Sbjct: 605 GVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKG 664
Query: 658 FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 717
FIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665 FIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDH 724
Query: 718 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 777
NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784
Query: 778 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 837
NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +
Sbjct: 785 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844
Query: 838 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 897
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRH
Sbjct: 845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRH 904
Query: 898 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 957
SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 905 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 964
Query: 958 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1017
EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 965 EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1024
Query: 1018 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1077
YQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1025 YQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1084
Query: 1078 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1137
RDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRG
Sbjct: 1085 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRG 1144
Query: 1138 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1172
CKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1145 CKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 1696 bits (4391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 813/1186 (68%), Positives = 972/1186 (81%), Gaps = 35/1186 (2%)
Query: 1 MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
MM DD +++ +I+QED W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 5 MMNDD---------SQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEI 55
Query: 61 VDESADIEIRPESQHNPGQ----------QSDFAEIYLSKPMMTESDGETATLFPKAARL 110
+DES I +RPESQH+PGQ F +IYLSKP E DG + + P AR+
Sbjct: 56 IDESPPITLRPESQHHPGQAVVSNNVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARI 114
Query: 111 RNLTYSAPLYVDVTKRVIKKGHD-GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 169
RNLTYSAPL+VD+TK V+ G+E + ++FIGKVPIMLRS YC L + ++D
Sbjct: 115 RNLTYSAPLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRD 174
Query: 170 LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 229
LT +GEC +DQGGYFIINGSEKVLIAQEKM+ NHVYVFKK P+KY+YVAE+RS E+ +
Sbjct: 175 LTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGS 234
Query: 230 RPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYD 289
RP STM+++ML T+ G G I+AT+PYI+ ++P+IIVFRALGFVADKDILEHICYD
Sbjct: 235 RPTSTMYLKMLHNTNK--GPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYD 290
Query: 290 FQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 349
F+D QMM+L+RPSLEE+FVIQ+Q+VALDY+GKRG+T+G TR++RIK+A+E+LQKEMLPHV
Sbjct: 291 FKDAQMMDLMRPSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHV 349
Query: 350 GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 409
+F ETKKA+YFGYI HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR LF+KL
Sbjct: 350 SVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKL 409
Query: 410 TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR 469
T+DVR Y+Q+C+D K+ A+K+KTITSGLKYSLATGNWG + + GT++GV+QVLNR
Sbjct: 410 TKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNR 469
Query: 470 LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 529
LT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M YI
Sbjct: 470 LTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYI 529
Query: 530 TVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 588
+VGSA+ PILEFLEEW TEN EEIS + I ATKIFVNG WVGIH P+ L+ TLR LR
Sbjct: 530 SVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLR 589
Query: 589 RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG 648
R DV+ EV VVRDIR KELR+YTD GRC RPLF+V+ ++ IKK+ I L + +
Sbjct: 590 RCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND---EY 646
Query: 649 GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVC 708
W DL+++G +EYID EEEET +I+MT DLV P E TYTHCEIHPS+ILG+C
Sbjct: 647 KWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSMILGIC 703
Query: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 768
SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+L
Sbjct: 704 CSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYL 763
Query: 769 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 828
HFR+LPAG N VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK +L++E
Sbjct: 764 HFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEE 823
Query: 829 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRY 886
F +P+R GMRHGSY+K+DDDGL PG RV+G+D+IIGKTTP+ S D+ + R+
Sbjct: 824 VFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRH 883
Query: 887 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 946
T+RD S +LR SETG+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQKGT GM
Sbjct: 884 TKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGM 943
Query: 947 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1006
Y QED+P+TVEGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A G EGDATPFTDVTV
Sbjct: 944 AYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTV 1003
Query: 1007 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1066
+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQ
Sbjct: 1004 EAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQ 1063
Query: 1067 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1126
ILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CGLIAIA
Sbjct: 1064 ILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIA 1123
Query: 1127 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1172
NLKKNSFECR CKNKT I Q+ +PYA KLLFQELM+M+IAPRM T+
Sbjct: 1124 NLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 1642 bits (4252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1182 (67%), Positives = 949/1182 (80%), Gaps = 26/1182 (2%)
Query: 6 YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
YD +E Q +E+D+E ++ QE W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2 YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 64 SADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFPKAARLRNLTYS 116
+ I+++ E+QH G+ + F +IYLSKP E DG + + P ARLRNLTYS
Sbjct: 62 APPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYS 121
Query: 117 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 176
APLYVD+TK VIK +GEE +TQ K FIGK+PIMLRS+YC L +++DL EL EC
Sbjct: 122 APLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNEC 177
Query: 177 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 236
P D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E RS E+ +RP ST++
Sbjct: 178 PLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIW 236
Query: 237 VRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 294
V ML+R AK + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +
Sbjct: 237 VSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPE 296
Query: 295 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 354
MME+++PSL+EAFVIQ Q VAL++IG RGA GVT++KRIKYAKE+LQKEMLPHVG DF
Sbjct: 297 MMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDF 356
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
CETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR
Sbjct: 357 CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVR 416
Query: 415 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYA 473
Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+A
Sbjct: 417 IYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFA 476
Query: 474 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 533
STLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS
Sbjct: 477 STLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGS 536
Query: 534 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD- 592
PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D
Sbjct: 537 QPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDI 596
Query: 593 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 652
+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++RE + W D
Sbjct: 597 IVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQD 655
Query: 653 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 712
LVA G +EYIDT EEET M++MT +DL + E AY TYTHCEIHPS+ILGVCASII
Sbjct: 656 LVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASII 711
Query: 713 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 772
PFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+
Sbjct: 712 PFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRE 771
Query: 773 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 832
LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G +E F +
Sbjct: 772 LPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEK 831
Query: 833 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRD 890
P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE + RYT+RD
Sbjct: 832 PTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD 891
Query: 891 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 950
S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y Q
Sbjct: 892 CSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQ 951
Query: 951 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNI 1009
EDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V I
Sbjct: 952 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKI 1011
Query: 1010 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1069
S L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL
Sbjct: 1012 SNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILN 1071
Query: 1070 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLK 1129
RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN +
Sbjct: 1072 RQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTR 1131
Query: 1130 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1171
+++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1132 THTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 1640 bits (4248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 795/1182 (67%), Positives = 949/1182 (80%), Gaps = 26/1182 (2%)
Query: 6 YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
YD +E Q +E+D+E ++ QE W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2 YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 64 SADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFPKAARLRNLTYS 116
+ I+++ E+QH G+ + F +IYLSKP E DG + + P ARLRNLTYS
Sbjct: 62 APPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYS 121
Query: 117 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 176
APLYVD+TK VIK +GEE +TQ K FIGK+PIMLRS+YC L +++DL EL EC
Sbjct: 122 APLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNEC 177
Query: 177 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 236
P D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E RS E+ +RP ST++
Sbjct: 178 PLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIW 236
Query: 237 VRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 294
V ML+R AK + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +
Sbjct: 237 VSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPE 296
Query: 295 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 354
MME+++PSL+EAFVIQ Q VAL++IG RGA GVT++KRIKYAKE+LQKEMLPHVG DF
Sbjct: 297 MMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDF 356
Query: 355 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 414
CETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR
Sbjct: 357 CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVR 416
Query: 415 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYA 473
Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+A
Sbjct: 417 IYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFA 476
Query: 474 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 533
STLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS
Sbjct: 477 STLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGS 536
Query: 534 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD- 592
PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D
Sbjct: 537 QPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDI 596
Query: 593 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 652
+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++RE + W D
Sbjct: 597 IVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQD 655
Query: 653 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 712
LVA G +EYIDT EEET M++MT +DL + E AY TYTHCEIHPS+ILGVCASII
Sbjct: 656 LVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASII 711
Query: 713 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 772
PFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+
Sbjct: 712 PFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRE 771
Query: 773 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 832
LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G +E F +
Sbjct: 772 LPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEK 831
Query: 833 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRD 890
P R GMRH Y+KLDDDGL PG RVSG+DVIIGKT P ++DE + RYT+RD
Sbjct: 832 PTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD 891
Query: 891 HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 950
S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y Q
Sbjct: 892 CSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQ 951
Query: 951 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNI 1009
EDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V I
Sbjct: 952 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKI 1011
Query: 1010 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1069
S L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL
Sbjct: 1012 SNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILN 1071
Query: 1070 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLK 1129
RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN +
Sbjct: 1072 RQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTR 1131
Query: 1130 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1171
+++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1132 THTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 1603 bits (4152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1164 (66%), Positives = 920/1164 (79%), Gaps = 23/1164 (1%)
Query: 22 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ-- 79
E+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 80 -----QSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 134
F +IYLSKP E DG + + P ARLRNLTYSAPLYVD+TK K +G
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TKNVEG 137
Query: 135 EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 194
+ ETQ K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSEKVLI
Sbjct: 138 LDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLI 196
Query: 195 AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS--AKGGSSGQ 252
AQEKM+TN VYVF + KYA+ E+RS E +RP ST++V M++R S K + GQ
Sbjct: 197 AQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQ 255
Query: 253 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 312
I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q Q
Sbjct: 256 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQ 315
Query: 313 QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
VAL++IG RGA GVT+DKRIKYAKEILQKEMLPHVG DFCETKKAY+ GY++HRLLL
Sbjct: 316 NVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 375
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
+LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L ++VR Y QK +D GKD NL+ A
Sbjct: 376 ASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELA 435
Query: 433 IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 491
IK IT GL+YSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GK
Sbjct: 436 IKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGK 495
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 551
LAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN E
Sbjct: 496 LAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
Query: 552 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRI 610
EI+P+ I ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RI
Sbjct: 556 EIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRI 615
Query: 611 YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 670
YTD GR RPL IVE LL+KK + L++R+ + W LVA G +EYIDT EEET
Sbjct: 616 YTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLEEETV 674
Query: 671 MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 730
MI+M+ DL Q + + AY TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 675 MIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMG 731
Query: 731 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 790
KQAMG+Y+TN+ RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYN
Sbjct: 732 KQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYN 791
Query: 791 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 850
QEDSVI+N S+++RGFFRS+F+RSY+D E K +E+F +P R GMR+ YDKLD
Sbjct: 792 QEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLD 851
Query: 851 DDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 908
DDG+ PG RVSG+DV+IGKT P + DE R+++RD S LR+SETG+VDQV+L
Sbjct: 852 DDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVML 911
Query: 909 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 968
T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDII+NP
Sbjct: 912 TLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINP 971
Query: 969 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMY 1027
HAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V IS L + GY +RG E MY
Sbjct: 972 HAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMY 1031
Query: 1028 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1087
NGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEM
Sbjct: 1032 NGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEM 1091
Query: 1088 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1147
ERDC I+HGA+ FL+ERLF+ SD YRVH+C CGLIAIANL+ N+FEC+GCKNKT I QV
Sbjct: 1092 ERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQV 1151
Query: 1148 HIPYACKLLFQELMAMAIAPRMLT 1171
+PYA KLLFQELM+M IAPR++
Sbjct: 1152 RLPYAAKLLFQELMSMNIAPRLMV 1175
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 1575 bits (4079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/1207 (62%), Positives = 935/1207 (77%), Gaps = 52/1207 (4%)
Query: 15 EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
E+ E +TQED W VIS++FEE L RQQL SFDEF+QNTMQEIVD+ + + + +Q
Sbjct: 4 EDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQ 63
Query: 75 HNPGQ-------QSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 127
H Q + +F +IYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K+V
Sbjct: 64 HTGAQGDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKV 123
Query: 128 IKKGHDGEEVTETQDF--------TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 179
+ + E + +KVFIGK+PIMLRS++C L S+ +L +L ECPYD
Sbjct: 124 MVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYD 183
Query: 180 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 239
QGGYFIINGSEKV+IAQE+ + N V VFKK P+ AYVAE+RS E +R S+M +++
Sbjct: 184 QGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKL 243
Query: 240 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 299
++R + +SGQ IRATLPYIR++IPI+IVFRALG V D+DILEHICYD D QM+E++
Sbjct: 244 MARNTE---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMM 300
Query: 300 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 359
+P +EEAFVIQ++ +ALDYIGKRG+T GVTR+KR++YA +ILQKE+LPH+ T + ET+K
Sbjct: 301 KPCIEEAFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRK 360
Query: 360 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 419
A++ GY+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFRMLFRK+TRDV Y+QK
Sbjct: 361 AFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQK 420
Query: 420 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 478
CV+ ++ NL A+K+ IT+GL+YSLATGNWG Q + R GVSQVLNR T+ASTLSH
Sbjct: 421 CVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSH 480
Query: 479 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 538
LRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS + PI
Sbjct: 481 LRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPI 540
Query: 539 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 598
+EFLEEWG E E+ +P+ P ATK+FVNG W+G+HRDP L +TLR LRRR+D++ EV
Sbjct: 541 IEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVS 600
Query: 599 VVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRES-----PE 646
+VRDIR KELR++TD GR RPLFIV+ L I+K I L + + PE
Sbjct: 601 IVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPE 660
Query: 647 DG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQARLHPEE------ 688
GW LV+ G IEY+D EEEET MI+M+ DL V+ L P +
Sbjct: 661 QRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAP 720
Query: 689 -AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 747
+ +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDT
Sbjct: 721 NPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDT 780
Query: 748 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 807
+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+SIDRG F
Sbjct: 781 MANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLF 840
Query: 808 RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 867
RS+F+R+Y D+EKK+G V E+F RP RS T+ M+HG+YDKL+DDGL PGTRVSGED+I
Sbjct: 841 RSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDII 900
Query: 868 IGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 925
IGKT PI D E GQ ++ + +RD S LR +E+G+VDQV++TTN +GL+FVKVR+RS
Sbjct: 901 IGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRST 960
Query: 926 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 985
RIPQIGDKF+SRHGQKGT+GMTY EDMP++ +GI PDII+NPHAIPSRMT+ L+EC +
Sbjct: 961 RIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQL 1020
Query: 986 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1045
KV+A G EGDATPFTDVTV+ +SK L G+Q RGFE MY+GHTGR+L A +FLGPTY
Sbjct: 1021 SKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTY 1080
Query: 1046 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1105
YQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S L+ERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140
Query: 1106 FDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1165
FD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T QV++PYA KLLFQELM+M I
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Query: 1166 APRMLTK 1172
APR+ TK
Sbjct: 1201 APRLFTK 1207
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 1556 bits (4029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/1187 (63%), Positives = 908/1187 (76%), Gaps = 31/1187 (2%)
Query: 18 DEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 73
D+ +EI+ QE W VISAYF+EKGLVRQQLDSFDEF+Q +Q IV++S +E++ E+
Sbjct: 19 DDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSEN 78
Query: 74 QH------NPGQQS-DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 126
QH NP + S F +IYLSKP E DG + P ARLRNLTY++PLYVD+TK
Sbjct: 79 QHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKV 138
Query: 127 VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 186
V + E+V + KVF+GKVP+MLRSSYC L +++DLTEL ECP D GGYF+I
Sbjct: 139 VTRDDSATEKV-----YDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVI 193
Query: 187 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 246
NGSEKVLIAQEKM+TN VYVF + KYA+ E RS E+ +RP STM+V ML+R
Sbjct: 194 NGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGG 252
Query: 247 GGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE 304
G + GQ I LPYI+ EIPI+IVFRALGFV+D+DIL HI YDF D +MME+++PSL+
Sbjct: 253 GKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLD 312
Query: 305 EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 364
EAFVIQ Q VAL++IG RGA GVTR++RIKYA+EILQKE+LPHVG + CETKKA++ G
Sbjct: 313 EAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIG 372
Query: 365 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 424
Y++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LFR L +++R QK ++
Sbjct: 373 YMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN 432
Query: 425 KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
D L +K TIT GL YSLATGNWG Q A +RAGVSQVLNRLTY +TLSHLRR N
Sbjct: 433 DDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRAN 492
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 543
SPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS PILEFLE
Sbjct: 493 SPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLE 552
Query: 544 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRD 602
EW EN EE+SP+ I ATKIFVNG WVGIHR+P+ L+ TL++LRR++D+ +EV +VRD
Sbjct: 553 EWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRD 612
Query: 603 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEY 661
IR +E+RIYTD GR RPL IVE Q+L +KKR I L++ + W DLV G +E
Sbjct: 613 IRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVEL 672
Query: 662 IDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 721
ID+ EEET+MI+M DL Y DT+THCEIHP++ILGVCASIIPFPDHNQSP
Sbjct: 673 IDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHPAMILGVCASIIPFPDHNQSP 726
Query: 722 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 781
RNTYQSAMGKQAMG+Y TN+ RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINAIV
Sbjct: 727 RNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIV 786
Query: 782 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 841
AI YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E + +E +P R GM
Sbjct: 787 AILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGM 846
Query: 842 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSE 899
RH YDKLD+DG+ PG RVSG+DVIIGKT P D+ +Y +RD S LR SE
Sbjct: 847 RHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSE 906
Query: 900 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 959
TG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHGQKGT+G+ Y QEDMP+T EG
Sbjct: 907 TGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEG 966
Query: 960 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGY 1018
+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D V V IS L + GY
Sbjct: 967 LTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGY 1026
Query: 1019 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1078
+RG E MYNGHTG++LT IF GPTYYQRLKHMVDDKIHSR RGP+Q++ RQP EGR+R
Sbjct: 1027 HLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1086
Query: 1079 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 1138
DGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +CGLI +ANL+ NSFEC+ C
Sbjct: 1087 DGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKAC 1146
Query: 1139 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKG 1185
+NKT + V IPYACKLLFQELM+M+IAPR++ K + H+ +
Sbjct: 1147 RNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKRSKHQSEA 1193
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 1525 bits (3948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1220 (60%), Positives = 923/1220 (75%), Gaps = 67/1220 (5%)
Query: 17 EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
+D+ IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V E + + + +QH
Sbjct: 12 DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 71
Query: 77 PGQQSD-------FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 129
+ + F +IY+SKP TE DG T +FP+ ARLRNLTYS+PLYVD+TKRV+K
Sbjct: 72 SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 131
Query: 130 KGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 179
+ EE+ + + TKV++GKVPIMLRS +C L E + EL ECPYD
Sbjct: 132 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 191
Query: 180 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 239
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+RS E +R S+M +++
Sbjct: 192 MGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKL 251
Query: 240 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 299
R + +S + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD D QM+E+L
Sbjct: 252 YGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEML 309
Query: 300 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 359
+P +EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++ + ET+K
Sbjct: 310 KPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRK 368
Query: 360 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 419
A++ GY+++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR+LF+KLT+D+ Y+Q+
Sbjct: 369 AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 428
Query: 420 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 478
CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLNR TY+STLSH
Sbjct: 429 CVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 488
Query: 479 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 538
LRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ + PI
Sbjct: 489 LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPI 548
Query: 539 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 598
L FLEEWG E E+ P+ P +T++FVNG WVG HR+P LV T+R LRRR D++ EV
Sbjct: 549 LYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVS 608
Query: 599 VVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG--- 648
++RDIR KE +I+TD GR RPLFIV+ K L ++K I L E E+
Sbjct: 609 IIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATN 668
Query: 649 ---------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEA 689
GW LV G +EY+D EEEET MI+MT DL Q L EE
Sbjct: 669 EFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEEQ 728
Query: 690 YAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735
D T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 729 ELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 788
Query: 736 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 795
+++TNY RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 789 VFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 848
Query: 796 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 855
IMNQSSIDRG FRSLFFR+Y D EK+ G E F +P RS+T+ ++HG+Y+KLDDDGL
Sbjct: 849 IMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLI 908
Query: 856 PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 913
PG RVSGED+IIGKTTPI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN D
Sbjct: 909 APGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 968
Query: 914 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 973
G +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY EDMP+T +GI PD+I+NPHAIPS
Sbjct: 969 GAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPS 1028
Query: 974 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1033
RMT+ LIEC++ KV++ G EGDA+PFTDVT + +SK L + GYQ RGFE MY+GHTG+
Sbjct: 1029 RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHTGK 1088
Query: 1034 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1093
+L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1089 KLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMI 1148
Query: 1094 AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 1152
AHGA+ FLKERL + SDA+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA
Sbjct: 1149 AHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYA 1208
Query: 1153 CKLLFQELMAMAIAPRMLTK 1172
KLLFQELMAM I+PR+ T+
Sbjct: 1209 AKLLFQELMAMNISPRLYTE 1228
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 1524 bits (3947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/1221 (60%), Positives = 924/1221 (75%), Gaps = 54/1221 (4%)
Query: 1 MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
M D+ DY ++ E+E IT ED WAVISA+F EKGLV QQLDSF++F+ T+Q+I
Sbjct: 1 MSADNEDYYDEDPYGFEEENAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDI 60
Query: 61 VDESADIEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFPKAARLRNL 113
+ E + + + +QH Q + F +IY++KPM+ ESDG T L+P+ ARLRNL
Sbjct: 61 ISEDSTLILEQLAQHTTEQDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNL 120
Query: 114 TYSAPLYVDVTKRVIKK----GHD------GEEVTETQDFTKVFIGKVPIMLRSSYCTLY 163
TYS+ L+VDVTKR + G D EE E + KVFIG++PIMLRS C L
Sbjct: 121 TYSSGLFVDVTKRTYEAVDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLS 180
Query: 164 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 223
+E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+RS
Sbjct: 181 DATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRS 240
Query: 224 MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 283
E +R ST+ V++ R S SS + I+ATLPYI+ +IPI+I+FRALG + D +IL
Sbjct: 241 ALEKGSRFISTLQVKLYGRES----SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEIL 296
Query: 284 EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 343
EHICYD D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQK
Sbjct: 297 EHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQK 356
Query: 344 EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 403
E LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+
Sbjct: 357 EFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFK 416
Query: 404 MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 462
LFRKLT+D+ Y+Q+ V+ D N++ AI AKTITSGLKY+LATGNWG Q A +RAG
Sbjct: 417 TLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAG 476
Query: 463 VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 522
VSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 477 VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKN 536
Query: 523 LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 582
L+LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L++
Sbjct: 537 LSLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLME 596
Query: 583 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDI 636
TLR LRR+ D+N EV ++RDIR +EL+I+TD GR RPLFIVE ++ L ++K +
Sbjct: 597 TLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHV 656
Query: 637 IALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-- 685
L E ED W L+ +G +EYID EEEE+ +I+M DL +
Sbjct: 657 AKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQD 716
Query: 686 -PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 733
P+E +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 717 IPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 776
Query: 734 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 793
MG+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 777 MGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 836
Query: 794 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 853
S+IMNQSSIDRG FRSLFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLD+DG
Sbjct: 837 SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDG 896
Query: 854 LAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTN 911
L PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S LR +E G+VDQVL+TTN
Sbjct: 897 LIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTN 956
Query: 912 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 971
DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAI
Sbjct: 957 QDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI 1016
Query: 972 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1031
PSRMT+ LIEC++ KVAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHT
Sbjct: 1017 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHT 1076
Query: 1032 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1091
G++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1077 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1136
Query: 1092 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIP 1150
MIAHGA+ FLKERL + SDA+RVH+C CGL++ IA L N FEC+GC NK DI Q+HIP
Sbjct: 1137 MIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHIP 1196
Query: 1151 YACKLLFQELMAMAIAPRMLT 1171
YA KLLFQELMAM I PR+ T
Sbjct: 1197 YAAKLLFQELMAMNITPRLYT 1217
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 1524 bits (3945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/1204 (61%), Positives = 914/1204 (75%), Gaps = 53/1204 (4%)
Query: 17 EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
EDE IT ED+WAVISA+F EKGLV QQLDSF++F+ T+Q+I+ E + + + +QH
Sbjct: 19 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 77 PGQQS-------DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV-- 127
+ F +IY++KPM+ ESDG T L+P+ ARLRNLTYS+ L+VDV KR
Sbjct: 79 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 138
Query: 128 --------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 179
+K EE + + KVFIG++PIMLRS C L + +E DL +L ECP+D
Sbjct: 139 AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFD 198
Query: 180 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 239
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+RS E +R ST+ V++
Sbjct: 199 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 258
Query: 240 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 299
R GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L
Sbjct: 259 YGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 314
Query: 300 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 359
+P +E+ FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E++K
Sbjct: 315 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 374
Query: 360 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 419
A++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LF+KLT+D+ Y+Q+
Sbjct: 375 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR 434
Query: 420 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 478
V+ D N++ AI AKTITSGLKY+LATGNWG Q A +RAGVSQVLNR TY+STLSH
Sbjct: 435 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 479 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 538
LRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI
Sbjct: 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 554
Query: 539 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 598
+ FL EWG E E+ P P AT++FVNG W G+HR+P L++TLR LRR+ D+N EV
Sbjct: 555 ITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVS 614
Query: 599 VVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG-- 649
++RDIR KEL+I+TD GR RPLFIVE + L ++K I L E + +GG
Sbjct: 615 MIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFE 674
Query: 650 ------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE-------------AY 690
W L+ +G +EYID EEEE+ +I+M DL A + E +
Sbjct: 675 DVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHH 734
Query: 691 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 750
A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A
Sbjct: 735 ATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMAN 794
Query: 751 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 810
+LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSL
Sbjct: 795 ILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSL 854
Query: 811 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 870
FFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL PG RVSGEDVIIGK
Sbjct: 855 FFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGK 914
Query: 871 TTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 928
TTPIS DE + GQ + Y ++RD S LR +E G+VDQVL+TTN DGL+FVKVRVR+ +IP
Sbjct: 915 TTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIP 974
Query: 929 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 988
QIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV
Sbjct: 975 QIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKV 1034
Query: 989 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1048
AA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQR
Sbjct: 1035 AALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQR 1094
Query: 1049 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1108
L+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL +
Sbjct: 1095 LRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEA 1154
Query: 1109 SDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1167
SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA KLLFQELMAM I P
Sbjct: 1155 SDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITP 1214
Query: 1168 RMLT 1171
R+ T
Sbjct: 1215 RLYT 1218
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 1504 bits (3894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/1200 (60%), Positives = 912/1200 (76%), Gaps = 55/1200 (4%)
Query: 23 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS- 81
IT ED+W VISA+F EKGLV QQLDSF++FI T+Q+++ E + + + +QH +
Sbjct: 21 ITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNI 80
Query: 82 ------DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----G 131
F +IYL+KP MTESDG + ++P+ ARLRNLTY++ L+V++ KR + G
Sbjct: 81 SRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPG 140
Query: 132 HDG-----EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 186
D +E +E + K+FIG+VPIMLRS YC L SE DL L ECP+D GGYFII
Sbjct: 141 RDLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFII 200
Query: 187 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 246
NGSEKVLIAQE+ + N V VFKK P+ +++AE+RS E +R ST+ V++ R
Sbjct: 201 NGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE--- 257
Query: 247 GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 306
GS+ + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L+P +EE
Sbjct: 258 -GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEG 316
Query: 307 FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 366
FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E++KA++ GY+
Sbjct: 317 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 376
Query: 367 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 426
I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LFRKLTRD+ ++Q+ V+ KD
Sbjct: 377 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKD 436
Query: 427 VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 485
NL+ A+KA TIT+GLKY+LATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+P
Sbjct: 437 FNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 496
Query: 486 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 545
IGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI+ FL EW
Sbjct: 497 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEW 556
Query: 546 GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 605
G E E+ P P AT++FVNG W GIHR+P LV T+R+LRR+ D+ EV +VRDIR
Sbjct: 557 GMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDIRE 616
Query: 606 KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPE-DGG-------- 649
KEL+I+TD GR RPLF+V + L ++K I L E + +GG
Sbjct: 617 KELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINY 676
Query: 650 -WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEEA-----------YADTY 694
W L+ G +EYID EEEET +I+M DL V + P + +++T+
Sbjct: 677 TWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTF 736
Query: 695 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 754
THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +LYY
Sbjct: 737 THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 796
Query: 755 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 814
PQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSID G FRSLFFRS
Sbjct: 797 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRS 856
Query: 815 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 874
Y D+EK++G + E F +P R+NT+ M+HG+Y+KLDDDGL PG RVSG+D+IIGKTTPI
Sbjct: 857 YMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTPI 916
Query: 875 SQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 932
D E GQ + + ++RD S LR +E G+VDQVL+TTN +GL+FVKVRVR+ ++PQIGD
Sbjct: 917 PPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGD 976
Query: 933 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 992
KF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIPSRMT+ LIEC++ KVAA
Sbjct: 977 KFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1036
Query: 993 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1052
G EGDA+PFTD+TVD ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQRL+HM
Sbjct: 1037 GNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHM 1096
Query: 1053 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1112
VDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SDA+
Sbjct: 1097 VDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAF 1156
Query: 1113 RVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1171
RVH+C CGL+ +A LK N FECRGCKNK DI QVHIPYA KLLFQELMAM IAPR+ T
Sbjct: 1157 RVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRLYT 1216
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 1445 bits (3741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/1163 (58%), Positives = 884/1163 (76%), Gaps = 32/1163 (2%)
Query: 20 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
E T+E +W++IS++FE+KGLVRQQLDSFD+F++ MQE+++ES I + +S G
Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV--QSAPTAGI 59
Query: 80 QSD------FAEIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 132
++ F +IY+SKP + TESDG T T+FP AR+R+LTY++PL++DVTK + +
Sbjct: 60 ETQKRIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSE-- 117
Query: 133 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 192
V + +++V G +P+MLRSSYC LY +KDL +LGECPYDQGGYFI+NGSEKV
Sbjct: 118 --LGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKV 175
Query: 193 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 252
++AQE+M++N VYVFKK QP Y + AE+RS+ E +R PST+ S K S
Sbjct: 176 IVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPG 227
Query: 253 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 312
IR +LP ++ ++P+ +++RALGF++DK+I++HI Y+ D +M ELL+ S+EE V+Q+Q
Sbjct: 228 VIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQ 286
Query: 313 QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
VALDYIGKR A +G ++KRI AK++L KE+LPH+GT +FCETKKAY+ GYI+ RLLL
Sbjct: 287 NVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLL 346
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
ALGRR DDRDHYG KR+DL+GPLL LFR LF+KL D ++QKC++NG++ N+
Sbjct: 347 VALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALG 406
Query: 433 IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 491
+KA IT G +Y+LATGNWG QA A TRAGV+QVLNR + STLSHLRR+N+PI +EGK
Sbjct: 407 LKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGK 466
Query: 492 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 551
LA PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E+ E
Sbjct: 467 LAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLE 526
Query: 552 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 611
EIS + + ATKIFVNG WVGIH DP L+K+L+ LRR ++++ EV +VRDIR KE+R+
Sbjct: 527 EISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQ 586
Query: 612 TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 671
+D GR RPL +V+ +L+I DI L++ E W +LV GFIE++D EEEE +M
Sbjct: 587 SDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIK----WDNLVTSGFIEFLDVEEEEMSM 642
Query: 672 ISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 731
I+M L + + +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSAMGK
Sbjct: 643 IAMNTKILADESRNSSDVSV-SYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGK 701
Query: 732 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 791
QAMGIY TN+ RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSGYNQ
Sbjct: 702 QAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQ 761
Query: 792 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 851
EDS+IMNQS+IDRG FRS F+R+Y D+E V E+F +P R + M++ +Y+KLDD
Sbjct: 762 EDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNKLDD 821
Query: 852 DGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVLLTT 910
DGL PGTRV+G+DV+IGK TPI E + +A Y +D S ++R +ETG+VD V++T
Sbjct: 822 DGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT- 880
Query: 911 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 970
N DG +F KV+VRS RIPQ+GDKF+SRH QKGT+G+T QEDMP+T EGI PDII+NPHA
Sbjct: 881 NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHA 940
Query: 971 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1030
IPSRMTIG LIEC++GKV+A G+EGDATPF+ VTVD IS L G+Q RG E MYNG
Sbjct: 941 IPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSYGFQQRGLEVMYNGM 1000
Query: 1031 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1090
TGR+L A +F GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERD
Sbjct: 1001 TGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERD 1060
Query: 1091 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1150
C+I+HGAS FLKERL D SDAY +VC+ CGL+A+ K N EC+GC N T++ V IP
Sbjct: 1061 CIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMVEIP 1118
Query: 1151 YACKLLFQELMAMAIAPRMLTKE 1173
YA KLL QELM M IAPR+ +E
Sbjct: 1119 YAFKLLIQELMGMNIAPRIRFEE 1141
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/1163 (42%), Positives = 698/1163 (60%), Gaps = 66/1163 (5%)
Query: 26 EDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 85
E WA+ ++F+ +GLVRQ LDSF++F++N +Q+++ E +I PG + +
Sbjct: 5 ESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI-----VTEVPGLKIKLGK 59
Query: 86 IYLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFT 144
I KP + E+D G + P ARLRNLTYS+P+++ + ++ +GE +
Sbjct: 60 IRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIP--VENNIEGEPI------- 110
Query: 145 KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 204
+++IG +PIML+S L E+GE P D GGYFI+NGSEKV+IAQE ++TN V
Sbjct: 111 EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRV 170
Query: 205 YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 264
V + + +VA+V S A M R+ T I+ + +
Sbjct: 171 LVDYGKSGSNITHVAKVTSSAAGYRV--QVMIERLKDST----------IQISFATVPGR 218
Query: 265 IPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 324
IP I+ RALGFV D+DI+ + D Q+ L PSLE+A I + + ALD+IG R A
Sbjct: 219 IPFAIIMRALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALDFIGNRVA 275
Query: 325 TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 384
+G R+ RI+ A++++ K LPH+GT KK YY ++++L LGRR DD+D
Sbjct: 276 -IGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKD 334
Query: 385 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 444
HY NKR+ LAG L LFR+ F+ +D+ ++K G+ ++L ++A IT +++
Sbjct: 335 HYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRH 394
Query: 445 SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 504
+LATGNW G R GVSQ+L+R + S LSHLRR+ S + R + R LH +QWG
Sbjct: 395 ALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWG 449
Query: 505 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA--- 561
MCP ETPEG GLVKNLAL+ ++VG + E G + E++ + Q
Sbjct: 450 RMCPFETPEGPNSGLVKNLALLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDV 509
Query: 562 ------TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV--VRDIRLKELRIYTD 613
+K+++NG +G + D + L K +R RR+ ++ EV V + L E+ I D
Sbjct: 510 EKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNEVHINCD 569
Query: 614 YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 673
GR RPL IV L+ DI L+ E D DLV +G IE+ID EEEE ++
Sbjct: 570 AGRVRRPLIIVNNGTPLVDTEDIKKLKNGEITFD----DLVKQGKIEFIDAEEEENAYVA 625
Query: 674 MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 733
L+P++ D +TH EI PS ILG+ ASIIP+P+HNQSPRNTYQSAM KQ+
Sbjct: 626 ----------LNPQDLTPD-HTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQS 674
Query: 734 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 793
+G+Y +NYQ R DT A++L+YPQ PLV TR + + + PAG NAI+AI Y+GYN ED
Sbjct: 675 LGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMED 734
Query: 794 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK-LDDD 852
S+IMN+SSI+RG +RS FFR Y EE K ++ P+ + G + Y + L+D+
Sbjct: 735 SIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTPE-AGVKGYKGKDYYRLLEDN 793
Query: 853 GLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTN 911
G+ P V G DV+IGK +P E + + +RD SI RH E G+VD VL+T
Sbjct: 794 GVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITET 853
Query: 912 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 971
+G + VKVRVR +RIP+IGDKF++RHGQKG VG+ Q DMP+T +GI PDII+NPHA+
Sbjct: 854 LEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHAL 913
Query: 972 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-TVDNISKALHKCGYQMRGFETMYNGH 1030
PSRMTIGQ++E I GK AA GK DATPF + + + K + K G+ E +Y+G
Sbjct: 914 PSRMTIGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGR 973
Query: 1031 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1090
TG++L + I G YYQ+L HMV DK+H+R RGPVQILTRQP EGR+R+GGLRFGEMERD
Sbjct: 974 TGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERD 1033
Query: 1091 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1150
C+I G + +K+RL D SD V++C+ CG + + KN + C +K+ + V +
Sbjct: 1034 CLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVS 1093
Query: 1151 YACKLLFQELMAMAIAPRMLTKE 1173
YA KLL QELM+M I+PR++ E
Sbjct: 1094 YAFKLLIQELMSMVISPRLILGE 1116
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1168 (41%), Positives = 711/1168 (60%), Gaps = 81/1168 (6%)
Query: 22 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
++T +D W V+ AY++EKGLVRQ LDS++ FI + MQE++DE + +P+ P +
Sbjct: 10 DVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGV--KPDI---PDFEV 64
Query: 82 DFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQ 141
F ++ L +P E+ G+ L+P AR+RNLTYSAP+Y+++ V +G +Q
Sbjct: 65 KFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVV-----NGV----SQ 115
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
+ +V IG++PIML+S C LY S+++L +LGE P D GGYFI+NGSE+V+++ E ++
Sbjct: 116 EAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAP 175
Query: 202 NHVYVFKKRQPNK-----YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 256
N V + + N+ ++Y R++ + R ++V+
Sbjct: 176 NKTLVERDERQNRIIAKCFSYRHGYRALITVERRKDGILYVK------------------ 217
Query: 257 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 316
LP + + + V RALG ++D++I+E + D ++ +L +LE+A + Q+ AL
Sbjct: 218 -LPNVPRPVKFVYVMRALGLLSDREIVEAVS---DDPRIQHVLFDNLEDASDVTTQEEAL 273
Query: 317 DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 376
DYIGK + G ++ R++ A+ I+ +LPH+G + KAYY G + R+L +LG
Sbjct: 274 DYIGKL-SLPGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLG 332
Query: 377 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD----VNLQ-- 430
R EDD+DHY NKRL LAG LL LFR+ F +L +D++ + K + N+Q
Sbjct: 333 LRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF 392
Query: 431 --FAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 488
+I+ ++ ++++LATG+W G R GVSQ+L+R Y STLSHLRR+ SP+ R
Sbjct: 393 VRNSIRPDVLSERIEHALATGSW-----PGGRTGVSQLLDRTNYISTLSHLRRVTSPLSR 447
Query: 489 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 548
E + R LH + WG +CP ETPEG CGLVKNLALM IT G + E+LE G
Sbjct: 448 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLERLGVV 507
Query: 549 NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN--TEVGVVRDIRLK 606
EE P P ++++NG VG D E V +R RR ++ V + +D +K
Sbjct: 508 PIEERRPN--PDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDVK 565
Query: 607 ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 666
E+ + +D GR RPL IVE R + + + A++ W DLV G IEY+D EE
Sbjct: 566 EIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLT----WSDLVKMGVIEYLDAEE 621
Query: 667 EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 726
EE +++ P E + +TH E+ P+ ILG+ AS++P+P+HN PRNTY
Sbjct: 622 EENALVAT----------WPWEV-TEEHTHLELMPAAILGIPASLVPYPEHNARPRNTYG 670
Query: 727 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 786
+ M KQ++G+ N++ R+DT ++++YPQ PLV +R M+ + F + PAG N +VA+ Y
Sbjct: 671 AGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSY 730
Query: 787 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS--NTMGMRHG 844
+GYN ED++IMN++SI+RG RS FFR+Y EEK+ + F PD + +G R+
Sbjct: 731 AGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERY- 789
Query: 845 SYDKLDDDGLAPPGTRVSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETG 901
Y LD+DG+ P ++V+G+DV++G+T+P + + G RR+ S+++R SETG
Sbjct: 790 -YRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVRPSETG 848
Query: 902 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 961
+VD+V++T DG + VKV R +RIP+ GDKF+SRHGQKG +G+ QEDMPWT GI
Sbjct: 849 VVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIV 908
Query: 962 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1021
PD+IVNPH IPSRMT+GQLIE I GKVA+ G+ D T F + + K L + G++
Sbjct: 909 PDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEELGFKHS 968
Query: 1022 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1081
G E MY+G TGRRL A +F+G YYQRL HMV DK+H+R RGPVQ+LT+QP EGR+R+GG
Sbjct: 969 GREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGG 1028
Query: 1082 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1141
LRFGEMERD +I HGA+ L ERL ++SD V VCE+CG IA+ + ++ C C +
Sbjct: 1029 LRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEE 1088
Query: 1142 TDIVQVHIPYACKLLFQELMAMAIAPRM 1169
I +V + YA KLL EL AM I P +
Sbjct: 1089 ERISKVEMSYAFKLLLDELKAMGIRPSL 1116
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1172 (38%), Positives = 658/1172 (56%), Gaps = 72/1172 (6%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T ED W ++ A+ + KGLV+Q LDS++ F+ +++IV + + S P +
Sbjct: 46 TIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVT----SDVEPWFYLKY 101
Query: 84 AEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 143
+I + P+ T++D A++ P RLR+LTY A +YVD+ G++V ++
Sbjct: 102 LDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYT------RGKQVVRRRN- 154
Query: 144 TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 203
V IG++P+MLRS+ C L +E ++ L ECP D GGYFI+ G+EKV++ QE++S N
Sbjct: 155 --VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNR 212
Query: 204 VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 263
+ V + +P K + A V S + R T + + K S +
Sbjct: 213 IIV--EAEPKKGLWQASVTS--STHERKSKTYVITKNGKLYLKHNS-----------VAD 257
Query: 264 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQVALDYIGK 321
+IPI++V +A+G +D++I E + + +L PS+EE I Q AL+YIG
Sbjct: 258 DIPIVVVLKAMGLQSDQEIFELVA--GAEASYQDLFAPSIEECAKLNIYTAQQALEYIGA 315
Query: 322 R---GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 378
R G R + A E+L +L H+ + KA Y G + R+L+ +
Sbjct: 316 RVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPL 375
Query: 379 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAI 433
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D Q +
Sbjct: 376 QVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTV 435
Query: 434 KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 493
+ IT G+ +L+TGNW RAGV+ VL+RL+Y S L + R+ S + K++
Sbjct: 436 HSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVS 495
Query: 494 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 553
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI++ +G E+ I
Sbjct: 496 GPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVI 555
Query: 554 SPAVIPQATK--IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 611
S + +++NG +GI R P + V + R+LRR ++ +G+ + + + I
Sbjct: 556 SGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFIS 615
Query: 612 TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 671
TD GR RPL IV+ ++ + I L++ + G+ D + +G +EY+D EE ++
Sbjct: 616 TDGGRICRPLIIVQNGLPKVESKHIRLLKEGK----WGFEDFLKQGLVEYVDVNEENDSL 671
Query: 672 ISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 731
IS+ D+ DT TH EI P ILG A +IP+P HNQSPRNTYQ AMGK
Sbjct: 672 ISVYERDIT----------PDT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 720
Query: 732 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 791
QA+G N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VAI YSGY+
Sbjct: 721 QAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDI 780
Query: 792 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 851
ED++++N+SSIDRGF R F + +K + G P R G + ++D
Sbjct: 781 EDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVED 840
Query: 852 DGLAPPGTRVSGEDVIIGKTTP-------ISQDEAQGQASRYTRRDHSISLRHSETGMVD 904
DGLA G RV + + K TP I+ Q S Y + ++ + E G +D
Sbjct: 841 DGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGY--KATPMTYKAPEPGYID 898
Query: 905 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 964
+V+LTT +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDI
Sbjct: 899 KVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDI 958
Query: 965 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1024
I+NPH PSRMT+G++IE + GKV G T F V++ S+ L + GY G +
Sbjct: 959 IMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKD 1018
Query: 1025 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1084
+ +G TG L A IF+GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRL 1078
Query: 1085 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDI 1144
GEMERDC+IA+GAS L ERL SDA V VC CGL+ C C++ ++
Sbjct: 1079 GEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGYKGW------CNSCQSTREV 1132
Query: 1145 VQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 1176
V++ IPYA KLLFQEL++M I PR+ +++ K
Sbjct: 1133 VKMTIPYAAKLLFQELLSMNIVPRLALEDEFK 1164
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1233 (37%), Positives = 697/1233 (56%), Gaps = 139/1233 (11%)
Query: 31 VISAYFEEKGLVRQQLDSFDEFI------QNTMQEIVDESA------------------- 65
++ AYF++ G+V QLDS + F + MQ+IVDE+
Sbjct: 4 IVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDETKVSDDADPGYFVLDPAKTGG 63
Query: 66 -DIEIR----PESQHNPGQQSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 120
DI I E+ H G+Q+ I++ KP + E+ G + + P ARLR+L Y AP
Sbjct: 64 HDIRIYYGRVRENGHYVGEQT----IFIGKPEIKEASGASNQITPNEARLRDLNYLAP-- 117
Query: 121 VDVTKRVIKKG-HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS-----EKD----- 169
V + R+++ G G E+ + +G +P+M+RS CTL + + EK+
Sbjct: 118 VTLKLRIVEDGIEKGSEIIK--------VGDLPVMVRSKICTLSEENLDQYIEKNNGPIG 169
Query: 170 ------LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 223
L +GE P D GGYFII GSE+V+++ E ++ N + V ++Y EV
Sbjct: 170 LSRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMV---EWEDRYESKVEVSK 226
Query: 224 MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI- 282
+ + R L TS + G+ G I ++P + +P++I+ +ALG D D+
Sbjct: 227 VFSQRGG------FRAL--TSMEKGTDGT-INVSIPSVAGTVPLVILMKALGLERDVDVH 277
Query: 283 --------LEHICY-DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKR 333
+E I Y + +D++ ++L P+ + + A+ Y+ KR A G ++ R
Sbjct: 278 DAIASVPEMEPIIYSNIEDSKNPKVLPPN-----GVNTTEDAISYLEKRFAA-GQAKEFR 331
Query: 334 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDL 393
K ++L +LPH+G +KA Y G + LL +LG R EDD+DH NKR+ L
Sbjct: 332 DKKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKL 391
Query: 394 AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQ 453
AG L+ LFR F+ + +D++ ++K + + + ++ A++ +T + ++++TGNW
Sbjct: 392 AGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQRVLHAMSTGNW-- 449
Query: 454 ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 513
G R GVSQ+L+R++ ST+SHLRR+ SP+ R + R LH +QWG +CP ETPE
Sbjct: 450 ---IGGRTGVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPE 506
Query: 514 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 573
GQ CGLVKN AL++ +T G ++E L+ E SP + ++++NG ++G
Sbjct: 507 GQNCGLVKNAALLINVTQGIDPDSVMEILKGMDVREVLEESP----KKGRVYLNGDFIGY 562
Query: 574 HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK 633
H DP LV +R RR ++ EV V D E+ + +D GR RPL I++ + ++ +
Sbjct: 563 HDDPRYLVSRIREERRSGRMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDGKTVLDR 622
Query: 634 RDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA----------- 682
I L+ E + DLV +G IE++D EEEE T +++ D+ +
Sbjct: 623 TMIERLKHGEI----SFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYRS 678
Query: 683 ---------------------RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 721
R + + TH EI P++ILGV ASIIP+P+HN SP
Sbjct: 679 MVDWVNPGESEITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHNSSP 738
Query: 722 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 781
R T SAM KQ++G +N + R DT ++L+YPQ PLV TR M+++H+ + PAG N +V
Sbjct: 739 RITIASAMAKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQNFVV 798
Query: 782 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 841
A+ Y GYN +D++++N+++I+RG RS FFR+Y EE++ ++ F P + +G
Sbjct: 799 AVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAEERRYPGGQEDKFEIPTH-DIIGA 857
Query: 842 RHGSYDK-LDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSE 899
R Y K LDD G+ P V G DV+IGKT+P +E + + RR+ S+++R +E
Sbjct: 858 RAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLEEGEERLGPQRRRESSVTMRPNE 917
Query: 900 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 959
+G VD V LT + R VK++VRS RIP++GDKF+SRHGQKG VG+ QEDMP+T +G
Sbjct: 918 SGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDG 977
Query: 960 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1019
I PD+I NPH+IPSRMT+G ++E I GK+A+ G+ D T F+ ++ AL K G++
Sbjct: 978 IIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGEPEKSLRDALVKYGFR 1037
Query: 1020 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1079
E MY+G TGRR A IF+G YYQ+L HMV K H+R RGPVQILTRQP EGRSR
Sbjct: 1038 KSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQ 1097
Query: 1080 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH--CGLIAIANLKKNSFECRG 1137
GGLRFGEMERD +IAHGA+ +K+RL DQSD ++VC + CG IAI + +K + C
Sbjct: 1098 GGLRFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPV 1157
Query: 1138 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1170
C N +I + YA KL+ EL+++ + R++
Sbjct: 1158 CGNTGNIYPIETSYAFKLMRDELISLGVVMRLM 1190
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/1181 (38%), Positives = 668/1181 (56%), Gaps = 111/1181 (9%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T E+ W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 84 AEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVT 138
IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNA------- 130
Query: 139 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 198
+ IG++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE+
Sbjct: 131 -------LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQ 183
Query: 199 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 258
+S N + V R K A A V S + SRT+ Y+R
Sbjct: 184 LSKNRIIVEADR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT 229
Query: 259 PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVAL 316
+ +IPI+I+F+A+G +D++I++ I + +M PSLEE Q Q AL
Sbjct: 230 --LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQAL 284
Query: 317 DYIG----KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
YIG ++ G + +I+ A+E+L +L HV +F K Y ++ R++L
Sbjct: 285 KYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL 344
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
A G DDRD+YGNKRL+LAG LL LF LF+K +++ + + +
Sbjct: 345 -AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVV 403
Query: 433 --IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 490
++ IT+G+ +++TGNW R GV+QVL+RL+Y S L + R++S +
Sbjct: 404 KHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTR 463
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 550
K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 464 KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDV 523
Query: 551 -----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 605
EE+S P +F+NG +G+ RD + LV T R +RR +N V + ++
Sbjct: 524 NLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTD 580
Query: 606 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 665
+ + I +D GR RP IV+KQ+ + + + L Q + D + + +EY+D
Sbjct: 581 RCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYR----NFEDFLHESLVEYLDVN 636
Query: 666 EEETTMISM---TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 722
EE I++ TIN DT TH EI P +LGVCA +IP+P HNQSPR
Sbjct: 637 EENDCNIALYEHTINK-------------DT-THLEIEPFTLLGVCAGLIPYPHHNQSPR 682
Query: 723 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 782
NTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA
Sbjct: 683 NTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVA 742
Query: 783 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-------YRDE--EKKMGTLVKEDFGRP 833
+ YSGY+ ED++++N++S+DRGF R L +++ Y ++ +K MG ++ +P
Sbjct: 743 VMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKP 802
Query: 834 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASRYTR 888
RH + LD DG+ PG +V + V++ K+ P ++Q +G Q +Y
Sbjct: 803 I------WRH---EILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY-- 851
Query: 889 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 948
+D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG G+
Sbjct: 852 KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIV 911
Query: 949 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1008
QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F V +
Sbjct: 912 PQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKD 971
Query: 1009 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1068
+ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R RGP +L
Sbjct: 972 VCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 1031
Query: 1069 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1128
TRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL+ +
Sbjct: 1032 TRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW 1091
Query: 1129 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1092 ------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/1181 (38%), Positives = 668/1181 (56%), Gaps = 111/1181 (9%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T E+ W ++ A+ + KGLV+Q +DSF+ FI +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 84 AEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVT 138
IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNA------- 130
Query: 139 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 198
+ IG++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE+
Sbjct: 131 -------LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQ 183
Query: 199 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 258
+S N + V R K A A V S + SRT+ Y+R
Sbjct: 184 LSKNRIIVEADR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT 229
Query: 259 PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVAL 316
+ +IPI+I+F+A+G +D++I++ I + +M PSLEE Q Q AL
Sbjct: 230 --LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQAL 284
Query: 317 DYIG----KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
YIG ++ G + +I+ A+E+L +L HV +F K Y ++ R++L
Sbjct: 285 KYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL 344
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 432
A G DDRD+YGNKRL+LAG LL LF LF+K +++ + + +
Sbjct: 345 -AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVV 403
Query: 433 --IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 490
++ IT+G+ +++TGNW R GV+QVL+RL+Y S L + R++S +
Sbjct: 404 KHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTR 463
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 550
K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 464 KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDV 523
Query: 551 -----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 605
EE+S P +F+NG +G+ RD + LV T R +RR +N V + ++
Sbjct: 524 NLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTD 580
Query: 606 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 665
+ + I +D GR RP IV+KQ+ + + + L Q + D + + +EY+D
Sbjct: 581 RCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYR----NFEDFLHESLVEYLDVN 636
Query: 666 EEETTMISM---TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 722
EE I++ TIN DT TH EI P +LGVCA +IP+P HNQSPR
Sbjct: 637 EENDCNIALYEHTINK-------------DT-THLEIEPFTLLGVCAGLIPYPHHNQSPR 682
Query: 723 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 782
NTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA
Sbjct: 683 NTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVA 742
Query: 783 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-------YRDE--EKKMGTLVKEDFGRP 833
+ YSGY+ ED++++N++S+DRGF R L +++ Y ++ +K MG ++ +P
Sbjct: 743 VMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKP 802
Query: 834 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASRYTR 888
RH + LD DG+ PG +V + V++ K+ P ++Q +G Q +Y
Sbjct: 803 I------WRH---EILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY-- 851
Query: 889 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 948
+D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG G+
Sbjct: 852 KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIV 911
Query: 949 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1008
QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F V +
Sbjct: 912 PQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKD 971
Query: 1009 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1068
+ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R RGP +L
Sbjct: 972 VCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 1031
Query: 1069 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1128
TRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL+ +
Sbjct: 1032 TRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW 1091
Query: 1129 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1092 ------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1157 (37%), Positives = 654/1157 (56%), Gaps = 69/1157 (5%)
Query: 27 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 86
+ W ++ A+ + KGLV+Q +DSF+ FI +++IV + + S +P + ++
Sbjct: 33 EKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVT----SGADPLFYLKYLDV 88
Query: 87 YLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTK- 145
+ KP + + T P RLR+ TYSAP+ VD+ E TQ +
Sbjct: 89 RVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDI-----------EYTRGTQRIKRN 137
Query: 146 -VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 204
+ IG++P+MLR S C L SE +L++L ECP D GGYF++ G EKV++ QE++S N
Sbjct: 138 NLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN-- 195
Query: 205 YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 264
K + V + + + + + T+ + + K S + +
Sbjct: 196 ----KMLTEDFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNS-----------MTDD 240
Query: 265 IPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKR 322
IPI+++F+ALG V+D++I I D ++ SL +A+ ++ QQ AL+Y+G +
Sbjct: 241 IPIVVIFKALGVVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297
Query: 323 GATV---GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 379
T + A+E+L +L HV +F KA Y ++ R++ L +
Sbjct: 298 LVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTL 357
Query: 380 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKT 437
DDRD+YGNKRL+LAG LL +F LF+++ +++ K + K ++A
Sbjct: 358 FDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQ 417
Query: 438 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 497
IT+GL+ ++++GNW RAGV+QVL+RL+Y S L + R+NS + K++ PR
Sbjct: 418 ITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRS 477
Query: 498 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS--P 555
L SQWGM+CP++TPEG+ACGLVKNLALM +IT P++ G E+ E+S P
Sbjct: 478 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNP 537
Query: 556 AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 615
P +F+NG +G+ + + LV+ LR +RR+ + + V V + + I+TD G
Sbjct: 538 INNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGG 597
Query: 616 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 675
R RP IVE +R L+K+ + L + D D + G IEY+D EE + I+
Sbjct: 598 RLCRPYVIVENRRPLVKQHHLDELNRGIRKFD----DFLLDGLIEYLDVNEENDSFIAWN 653
Query: 676 INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735
E+ D TH EI P +LGVCA ++P+P HNQSPRNTYQ AMGKQAMG
Sbjct: 654 -----------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMG 702
Query: 736 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 795
+ N + R+D+L Y L YP P+V ++ +E +F +LPAG NA VA+ YSGY+ ED++
Sbjct: 703 MIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDAL 762
Query: 796 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 855
I+N++SIDRG+ R L +++ + K+ + P + +D LD DG+
Sbjct: 763 ILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIV 822
Query: 856 PPGTRVSGEDVIIGKTTP--ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 913
PG +V + ++I K P S + QGQ+++ IS + E +++V+++ NA+
Sbjct: 823 APGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAE 882
Query: 914 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 973
+K+ +R RIP+IGDKFSSRHGQKG G+ QEDMP+ GI PD+I+NPH PS
Sbjct: 883 EDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPS 942
Query: 974 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1033
RMT+G+ +E + GK GK T F V++I L + G+ G + Y+G TG
Sbjct: 943 RMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGT 1002
Query: 1034 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1093
L A I+ GP YYQ+LKHMV DK+H+R RGP +LTRQP +GRSR+GGLR GEMERDC+I
Sbjct: 1003 PLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLI 1062
Query: 1094 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1153
++GAS + ERL SDA+ V VC CG +A + C C++ ++ ++ +PYAC
Sbjct: 1063 SYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYAC 1116
Query: 1154 KLLFQELMAMAIAPRML 1170
KLLFQEL +M + P+M+
Sbjct: 1117 KLLFQELTSMNVVPKMI 1133
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/1158 (37%), Positives = 641/1158 (55%), Gaps = 68/1158 (5%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T +D W ++ A+ + KGLV+Q LDSF+ F+ +++I+ + I S +P +
Sbjct: 40 TAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLIL----SDVDPEFYLKY 95
Query: 84 AEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 143
+I + K + S + P RLR++TYSAP+YVD+ + G + +D
Sbjct: 96 VDIRVGKK--SSSSTKDYLTPPHECRLRDMTYSAPIYVDI------EYTRGRNIIMHKD- 146
Query: 144 TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 203
V IG++PIMLRS+ C LY E + +L ECP D GGYFI+NG+EKV++ QE++S N
Sbjct: 147 --VEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNR 204
Query: 204 VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 263
+ V + ++ + + + + R T + + K S I
Sbjct: 205 IIV----EADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNS-----------IAE 249
Query: 264 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQVALDYIGK 321
EIPI IV +A G ++D +I++ +C + D+ ++ +LEE+ I QQ AL+YIG
Sbjct: 250 EIPIAIVLKACGILSDLEIMQLVCGN--DSSYQDIFAVNLEESSKLDIYTQQQALEYIGA 307
Query: 322 RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 381
+ T+ + ++ E + ++ H+ +KA Y + R+++ + D
Sbjct: 308 KVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMID 367
Query: 382 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAK 436
DRD+ GNKRL+LAG L+ LF LF+K D + + K + D L + +
Sbjct: 368 DRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSN 427
Query: 437 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 496
ITSGL +++TGNW RAGV+ VL+RL+Y S L + R++S + K++ PR
Sbjct: 428 NITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPR 487
Query: 497 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 556
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+ I A
Sbjct: 488 ALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSA 547
Query: 557 VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 616
+ +++NG +G R P V R LRR V+ + + + + I TD GR
Sbjct: 548 SLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGR 607
Query: 617 CSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTI 676
RPL IV + +K + L E D D + G +EY+D EE + I++
Sbjct: 608 ICRPLIIVSDGQSRVKDIHLRKLLDGELDFD----DFLKLGLVEYLDVNEENDSYIALYE 663
Query: 677 NDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 736
D+V + TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 664 KDIVP-----------SMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGA 712
Query: 737 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 796
N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED+++
Sbjct: 713 IAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALV 772
Query: 797 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGL 854
+N+SSIDRGF R R K+ ++ G R D + +H S L DGL
Sbjct: 773 LNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS---LGPDGL 829
Query: 855 APPGTRVSGEDVIIGKTTPISQDEAQGQASRYTR---RDHSISLRHSETGMVDQVLLTTN 911
G +V + I K+ P + +A + + R+ + R E +DQV+++ +
Sbjct: 830 GEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVS 889
Query: 912 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 971
+ +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH
Sbjct: 890 DNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGF 949
Query: 972 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1031
PSRMT+G++IE I GK G T F ++++SK L G+ G + +Y+G T
Sbjct: 950 PSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009
Query: 1032 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1091
G L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069
Query: 1092 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1151
+IA+GAS L ERL SDA+ V VC+ CGL+ + C CK+ +I+++ IPY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPY 1123
Query: 1152 ACKLLFQELMAMAIAPRM 1169
A KLLFQEL++M IAPR+
Sbjct: 1124 AAKLLFQELLSMNIAPRL 1141
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1224 (38%), Positives = 684/1224 (55%), Gaps = 106/1224 (8%)
Query: 15 EEEDEEEEITQEDAWAVISAYFEE--KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
E ED QE +A++ +FE+ + LV+ +DSF++FI+ + I+ + D I +
Sbjct: 7 EIEDVNNTYDQEAHFALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNIL-QGGDNVISEK 65
Query: 73 SQHNP--GQQSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 130
+ N + F ++ + P + + E L+P A + ++YSA VT+
Sbjct: 66 ATENKIIRYRLTFNDLGIKPPTL---ENEENLLYPLDAIRKQISYSAKYTATVTQWQDIV 122
Query: 131 GHDGEEVTETQDF----TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 186
D ++ TET+ V I K+PIM+ S YC L + C YD GGYFI+
Sbjct: 123 DIDTKK-TETRIIGSPEKDVPIAKIPIMVLSKYCNLTLRPD---IAGKHCKYDAGGYFIV 178
Query: 187 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 246
NGSEKV+++ E M VF +R N Y V+S+ SQ +F + R ++
Sbjct: 179 NGSEKVVLSVESMIPRKPVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNS- 237
Query: 247 GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR------ 300
I ++P+ + E+ I RALG D+DI++ I ++ ++ LL
Sbjct: 238 -------IILSIPHFK-EVSIFTFIRALGIETDEDIVDSILDVKKEKDLLNLLSICMNSS 289
Query: 301 --PSL--EEAFVIQNQQVALDYIGKRGATVG-----VTRDKRIKYAKEILQKEMLPHV-- 349
PS+ EEA I Q+ K T V ++R +Y +I+ + +LPH+
Sbjct: 290 NTPSVTKEEALEIMANQI------KSTKTFTDTNPEVKAEQRRRYLDKIMTQFVLPHITS 343
Query: 350 GTGD--FCETKKAYYFGYIIHRLLLCAL--GRRAE-----DDRDHYGNKRLDLAGPLLGG 400
GTGD + KA+Y Y+IH+LL C L R E DDRD NKR+DL G LLGG
Sbjct: 344 GTGDPEIDKIYKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGG 403
Query: 401 LFRMLFRKLTRDV-RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT 459
LF+ + K+ D + + K +D+ K N+ IK +I GL+ +L+TGN+G + +
Sbjct: 404 LFKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFG----SQS 459
Query: 460 RAGVSQVLNRLTYASTLSHLRRLNSPI--GREGKLAKPRQLHNSQWGMMCPAETPEGQA- 516
R G+SQ+LNR+ + +LS++RR+ +P K+ PR LHN+Q+G MCP E+PEG+
Sbjct: 460 RKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPK 519
Query: 517 CGLVKNLALMVYITVG-SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 575
GLVKN+A+M IT+ ++ PI+E E + + Q K+F+NG W+G+ R
Sbjct: 520 TGLVKNMAMMEGITINMNSQIPIIESYLIGKITTLESANKKRLHQYVKVFLNGNWLGVTR 579
Query: 576 DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 635
+ + LR +R R +++ VG+V + + E IYTD GR RP V +L K
Sbjct: 580 NIIKIHNDLRAMRFRGELSRMVGLVLNYKTAEFHIYTDGGRLIRPYLTVTDNKLNFKPEM 639
Query: 636 IIALQQRESPEDGGWHDLVAK--GFIEYIDTEEEETTMISM------------------- 674
+ E W + +AK IEY+D EEE+ M+++
Sbjct: 640 L--------DEVNSWEEFLAKFPEVIEYVDKEEEQNIMLAVFPQYIQDANRIMSKKPINS 691
Query: 675 --TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 732
+N + + + + Y YTHCEIHP +ILG+ +S IPFPDHNQSPR +Q +Q
Sbjct: 692 RDQLNKINRTNRYDDNVYV-RYTHCEIHPCMILGLISSNIPFPDHNQSPRGIFQYNQARQ 750
Query: 733 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY-NQ 791
AMG+Y+++Y+ R D ++Y+LY+PQ PLVT+RA ++ PAG N+IVAIA Y+G NQ
Sbjct: 751 AMGLYISDYRERTD-ISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIASYTGLMNQ 809
Query: 792 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED-FGRPDRSNTMGMRHGSYDKLD 850
EDS+++N S+I +G+ R+ + Y + KK + F +PDR+ +R +YDKL
Sbjct: 810 EDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDNLRDANYDKLS 869
Query: 851 DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 910
++G A T + DV+IG P + A+ +Y +D S + G VD+V+
Sbjct: 870 EEGYAKVETVIRDGDVVIGVVNP--KPTAREDEKQY--KDASSIYKSLIPGAVDKVITEV 925
Query: 911 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 970
N DG +K+R+RS RIP +GDKFSSR GQKGT+G + DM ++ G+ PDII+NP+
Sbjct: 926 NNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNC 985
Query: 971 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1030
+P RMTIGQLIEC++GK+ A G GDATPFT V ++ I+ L GY+ G ETMYNG
Sbjct: 986 MPKRMTIGQLIECLLGKLCAVKGVYGDATPFTSVDLNAINDELVAAGYEEWGNETMYNGM 1045
Query: 1031 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG-EMER 1089
G++L IF+GPTYYQRLK MV DK HSR RGP Q+LTRQ EGRSRDGGLR G EMER
Sbjct: 1046 NGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMER 1105
Query: 1090 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1149
D + AHG + FLKE+ D SD Y HVC+ CG A +K + C GC+N T I ++ I
Sbjct: 1106 DALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVI 1165
Query: 1150 PYACKLLFQELMAMAIAPRMLTKE 1173
PYA KLL QEL ++ I ++ T +
Sbjct: 1166 PYAFKLLLQELASINILGKIRTSK 1189
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1194 (35%), Positives = 627/1194 (52%), Gaps = 117/1194 (9%)
Query: 33 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 85
+++F++ GL+ QL+S++ FI++ +Q + ++ + P + +D F E
Sbjct: 40 TSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGE 99
Query: 86 IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----------GHDGE 135
+ + KP D E L P ARL+N+TYSA + V+V V K G D
Sbjct: 100 VTVEKPTFFSDDKELEFL-PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNY 158
Query: 136 EVTETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 193
+ D K + IG +P+M++S C + +++ + G+C +DQGGYF+I G+EKV
Sbjct: 159 VEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEKVF 217
Query: 194 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 253
IAQE+M T +++ P ++ +E +NR F+ LS +
Sbjct: 218 IAQEQMCTKRLWI--SNSPWTVSFRSE-----NKRNR-----FIVRLSENEKAEDYKRRE 265
Query: 254 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE------EAF 307
T+ ++ TEIP+ ++F ALG +DK+ ++ I +D D + L S+ EAF
Sbjct: 266 KVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAF 325
Query: 308 VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 367
N AL Y+ ++ + T+ + E L + P + + KKA + GY++
Sbjct: 326 RCGNN--ALTYVEQQ---IKSTKFPPAESVDECLHLYLFPGLQS----LKKKARFLGYMV 376
Query: 368 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 427
LL G+R ++RD + NKR++LAG LL R+ R + +QK + D+
Sbjct: 377 KCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDL 436
Query: 428 N-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSP 485
++ + A IT+GL + +TG W R +GV L R TL LRR
Sbjct: 437 KPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQ 496
Query: 486 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 545
+ GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ S ++E L
Sbjct: 497 VLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFAC 555
Query: 546 GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 605
G E + + + K+ +NG WVG+ D E V L+ RR+ ++ E+ + RD
Sbjct: 556 GMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDD 615
Query: 606 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 665
E+RI+TD GR RPL +VE + L ++E P + L+ G +E I E
Sbjct: 616 NEVRIFTDAGRLLRPLLVVENLQKL----------KQEKPSQYPFDHLLDHGILELIGIE 665
Query: 666 EEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 725
EEE + I L++ YTHCE+ S +LGV +++PF +H+ R Y
Sbjct: 666 EEEDCNTAWGIKQLLKE--------PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLY 717
Query: 726 QS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 784
QS +QA+G TN R DTL+ L+YPQKPL T A E L L G NAIVA+
Sbjct: 718 QSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVN 777
Query: 785 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--------EKKMGTLVKEDFGRPDRS 836
+ GYNQEDS++MN++S++RG FRS RSY+ E KKM LV+ FG+
Sbjct: 778 VHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQ--FGKTHS- 834
Query: 837 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 896
+ G D L+DDG G +S D++IG+ T + DHSI L+
Sbjct: 835 -----KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTE-------------SGADHSIKLK 876
Query: 897 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 956
H+E G+V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G Q++ P+T
Sbjct: 877 HTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFT 936
Query: 957 VEGITPDIIVNPHAIPSRMTIGQLIECIMGK-VAAHMGKEGD----------ATPFTDVT 1005
++GI PDI++NPHA PSR T GQL+E + K +A + KEG ATPF+
Sbjct: 937 IQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPG 996
Query: 1006 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1065
V I++ LH+ G+ G E +YNG +G + +MIF+GPT+YQRL HM +DK+ R GPV
Sbjct: 997 VTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPV 1056
Query: 1066 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA- 1124
LTRQP R R GG++FGEMERDC+IAHGAS L ERLF SD+ ++H+C C A
Sbjct: 1057 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYAN 1116
Query: 1125 ------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1172
+ K CR C + +V+V++PY KLL QEL +M I TK
Sbjct: 1117 VIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTK 1170
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1226 (34%), Positives = 645/1226 (52%), Gaps = 142/1226 (11%)
Query: 21 EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE----SQHN 76
+E+++E+ ++ YF+ GLV+ QL++FD FI + ++ I+D+ A I + SQ
Sbjct: 18 KEVSEENRLMLLKDYFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIK 77
Query: 77 PGQQSD-------------FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 123
G + F ++++KP +T D L+P AR + +TY + ++VDV
Sbjct: 78 NGAVEEGYNRKESEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDV 137
Query: 124 TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 183
+ V++ D EE+ + +V I K+PIMLRSS C LY + ++ ELGE D GGY
Sbjct: 138 LEYVLR---DEEEILVNKHL-RVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGY 193
Query: 184 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA--YVAEVRSMAESQ----------NRP 231
FIING+E+VLI Q + + N F+ NK++ ++RSM+E N
Sbjct: 194 FIINGNERVLIGQLRNAYNRSICFR----NKFSEPLTCDMRSMSEETGHSVLIQLRLNDS 249
Query: 232 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 291
P + R L + G I + +T IPI VFR L VA D L+ + D +
Sbjct: 250 PISQ-KRNLKKLDKNGT-----IDLIISQTKTPIPISFVFRVLK-VATIDKLKFLIGDEE 302
Query: 292 --DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 349
D +++++ + + + + ++ + + +K K + ++++M PH+
Sbjct: 303 ELDKYLIKIVEET-SDGGIFDDMEIEISQEDDFNEENEESTEK--KKITQFIEQDMFPHL 359
Query: 350 GTGDFCETKKAYYFGYIIHRLLLC--------ALGRRAED----------------DRDH 385
G E +KA G ++ +LLL +RA D DRD+
Sbjct: 360 GVSSTHE-EKAILLGKMVRKLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQEDRDN 418
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 445
Y NKR++ AG L LFRML+++ + ++K V + K IT+GL +S
Sbjct: 419 YSNKRVETAGVLCFELFRMLYKRFIKSNINQLEK----RNRVEMDVISKNAFITTGLHFS 474
Query: 446 LATGNWGQANAAGTRAGVSQV-LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 504
+TGNWG R GV+Q+ N++++ + S+LRR P+G+EGK K RQ+H S
Sbjct: 475 FSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIF 534
Query: 505 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE--EWGTENFEEIS----PAVI 558
CP+ETPEGQ G+ N +++ +++ +++ I E +E ++ EIS +
Sbjct: 535 FACPSETPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFL 594
Query: 559 PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 618
+ + IFVNG G+ P+ L+ +R L+ + + +V V LKE+ I +D GR
Sbjct: 595 SKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKEVHISSDAGRFI 654
Query: 619 RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH---DLVAKGFIEYIDTEEEETTMISMT 675
RP ++ LQ ++ + W+ + + G + Y D E E + I++
Sbjct: 655 RP---------------VLNLQSIKTNGNVMWNSFQNCLENGHVVYKDAYEIEQSQIAIN 699
Query: 676 INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735
+ DL + Y Y EIH S +LGV A+ IPF +H QSPR YQS+M KQA+G
Sbjct: 700 LQDLSR--------YPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMAKQAIG 751
Query: 736 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 795
+ ++ + D V+ Y Q+PLVTT+ E F P G+NA+VA+A Y+G+NQEDS+
Sbjct: 752 -NIPSHHVKSDNTTRVMDYVQRPLVTTQIAEMNRFNDFPNGLNAMVAVAIYTGFNQEDSI 810
Query: 796 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD--- 852
I+N++SIDRG F + +++ EE+K+G V E P S R +Y L+D+
Sbjct: 811 ILNKASIDRGMFHVVTYKTIIVEERKIG--VNEKICMPVAS---VRRMNNYSLLEDNPES 865
Query: 853 ---GLAPPGTRVSGEDVIIGKT-TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 908
G+ + V DV++GK T IS+D + + DHS + SE G VD+++
Sbjct: 866 PYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQET------DHSTIVSISEEGKVDRIIR 919
Query: 909 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 968
T+ G+ K+ + + P+IGDKF S QKGTVGM + DMP+ +G PD+I+NP
Sbjct: 920 TSKK-GILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINP 978
Query: 969 HAIPSRMTIGQLIECIMGKVAAHMGKE-GDATPFTDVTVDN-------ISKALHKCGYQM 1020
H +PSRMTI Q++ IMGK + GDA+PF + +++ + K L +CGY
Sbjct: 979 HCLPSRMTINQIMASIMGKTCCAKNETFGDASPFQESSLEKPQDKIHALCKELEECGYNY 1038
Query: 1021 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ--ILTRQPAEGRSR 1078
G ETM G G++L A IF GP YY RL HMV DKI SR + +TRQP GR+
Sbjct: 1039 NGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRAN 1098
Query: 1079 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 1138
+GGLR GEME+DCM+ HG S FL E++FDQSD + +++C C +N F C GC
Sbjct: 1099 EGGLRIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGC 1158
Query: 1139 KNKTDIVQVHIPYACKLLFQELMAMA 1164
N DIV+ + P+A KL FQEL AM
Sbjct: 1159 -NGIDIVKFNCPFAAKLFFQELTAMG 1183
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust.
Identities = 408/1190 (34%), Positives = 612/1190 (51%), Gaps = 129/1190 (10%)
Query: 21 EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
E Q +++FEE GL+ QL+S++ FI++ +Q + + DI + P
Sbjct: 19 ESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDILVEP--------- 69
Query: 81 SDFAEIYLSKPMMTESDGET--ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 138
S ++ + DG+ AT+F K + + K G D
Sbjct: 70 --------SFDVIKKKDGDWRYATVFKK--------------IVIKHDKFKTGQDEYVEK 107
Query: 139 ETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 196
E D K + IG +P+M++S C + +++ + G C +DQGGYF+I G+EKV IAQ
Sbjct: 108 EILDVKKQDILIGSIPVMVKSVLCKTSEKGKENCKK-GNCAFDQGGYFVIKGAEKVFIAQ 166
Query: 197 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 256
E+M T +++ P ++ +E + +NR VR+ A+ + +
Sbjct: 167 EQMCTKRLWI--SNSPWTVSFRSETK-----RNR----FIVRLSENEKAEDYKIMEKV-L 214
Query: 257 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI----QNQ 312
T+ ++ TEIP+ ++F ALG +DK+ ++ I +D D + L S+ EA + +
Sbjct: 215 TVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHEADAVCEAFRCG 274
Query: 313 QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 372
AL Y+ + + T+ + + L+ + P + KKA + GY++ LL
Sbjct: 275 NNALTYVEHQ---IKSTKFPPAESVDDCLRLYLFPCLQG----LKKKARFLGYMVKCLLS 327
Query: 373 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQF 431
G+R ++RD + NKR++LAG LL R+ R + +QK + D+ ++
Sbjct: 328 AYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDGDLKPIEH 387
Query: 432 AIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREG 490
+ A IT+GL + +TG W R +GV L R TL LRR + G
Sbjct: 388 YLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG 447
Query: 491 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 550
K+ R H S WG +C TP+G+ CGLVKN++L+ ++ ++E L G E
Sbjct: 448 KVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST-QGLESVVEMLFTCGMEEL 506
Query: 551 EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 610
+ + K+ +NG WVG+ D E V L+ RR+ ++ E+ + RD E+RI
Sbjct: 507 MNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRI 566
Query: 611 YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 670
+TD GR RPL +VE L +++ P + L+ +G +E I EEEE
Sbjct: 567 FTDAGRLLRPLLVVENLHKL----------KQDKPTQYPFKHLLDQGILELIGIEEEEDC 616
Query: 671 MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AM 729
+ I L++ YTHCE+ S +LGV +I+PF +H+ R YQS
Sbjct: 617 TTAWGIKQLLKE--------PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKH 668
Query: 730 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 789
+QA+G TN R DTL+ L+YPQKPL T A E L L G NAIVA+ + GY
Sbjct: 669 CQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGY 728
Query: 790 NQEDSVIMNQSSIDRGFFRSLFFRSYRDE--------EKKMGTLVKEDFGRPDRSNTMGM 841
NQEDS++MN++S++RG FRS RSY+ E KKM LV+ FG+
Sbjct: 729 NQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQ--FGKTYS------ 780
Query: 842 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETG 901
+ G D L+DDG G +S D++IG+ T + DHSI L+H+E G
Sbjct: 781 KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTE-------------SGADHSIKLKHTERG 827
Query: 902 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 961
+V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G Q++ P+T++GI
Sbjct: 828 IVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIV 887
Query: 962 PDIIVNPHAIPSRMTIGQLIECIM------------GKVAAHMGKEGDATPFTDVTVDNI 1009
PDI++NPHA PSR T GQL+E + G AA+ ATPF+ V I
Sbjct: 888 PDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEI 947
Query: 1010 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1069
++ LH+ G+ G E +YNG +G + ++IF+GPT+YQRL HM ++K+ R GPV LT
Sbjct: 948 TEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLT 1007
Query: 1070 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA----- 1124
RQP R R GG+RFGEMERDC+IAHGAS L ERLF SD+ ++H+C C A
Sbjct: 1008 RQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIER 1067
Query: 1125 --IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1172
+ K CR C + +V+V++PY KLL QEL +M I TK
Sbjct: 1068 TPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTK 1117
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 613 bits (1581), Expect = e-174, Method: Compositional matrix adjust.
Identities = 394/1200 (32%), Positives = 623/1200 (51%), Gaps = 122/1200 (10%)
Query: 20 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
++ ++ ++ +++ YF+ GLV+ Q+++F+ FI ++ I++ + I+ + ++
Sbjct: 11 DKHLSSDNRAKIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDNYS--- 67
Query: 80 QSDFAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 139
F IY+ P + + D L+P+ AR ++L+Y+ + V+V + V K +++E
Sbjct: 68 -LKFTNIYVEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISE 126
Query: 140 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL-GECPYDQGGYFIINGSEKVLIAQEK 198
+V I K+PIML S C L + + + ++ G DQGGYFIING E+VLI+Q +
Sbjct: 127 QY---RVPIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQVR 183
Query: 199 MSTNHVYVFKKRQPNKY-AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 257
+ N F K K + E+RSM E S V+M+ I +
Sbjct: 184 KAYNKPVCFVKSTSQKEDVLICEMRSMCEETFHSTSVQ-VKMIKNK----------IMVS 232
Query: 258 LPYIR--TEIPIIIVFRALGFVADK------------------------DILEHICY--- 288
L R +IP+ IVF+ LG+ D+ D LE Y
Sbjct: 233 LKLKRKLIDIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIKNDCLEEFAYGIA 292
Query: 289 ------DFQDTQMMELLRPSLEE----AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 338
D D+ ++ V +N ++D G AT G+T I+ +
Sbjct: 293 VSAADGDNSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAAT-GIT----IEDVQ 347
Query: 339 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 398
+ L ++ PH+G ++ +++ + LL + D+RD Y +KR++ AG L
Sbjct: 348 KSLDMDLFPHLGITS-TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELY 406
Query: 399 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 458
LFR+L++K + ++ + ++ ++ IT+G+ YS ++G WG
Sbjct: 407 SFLFRLLYKKFQKTCITQIRN-----RKPDISNFLRTSGITTGILYSFSSGYWGVQRNTY 461
Query: 459 TRAGVSQVLN-RLTYASTLSHLRRLNSPIGREGKLAKP---RQLHNSQWGMMCPAETPEG 514
R GVSQV+N +++ + S LRR+ P ++GK AK RQ+H S ++CP ETPEG
Sbjct: 462 IRTGVSQVVNPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEG 521
Query: 515 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 574
+ G V N+A+ +T G + I++ ++ +G + + + +NG G
Sbjct: 522 KGVGTVLNMAVFCQVTTGISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNG 581
Query: 575 RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 634
+ RL D N + V R + + E I++D GR RP+F ++K
Sbjct: 582 H-----ANVIHRLNFLNDTNISIVVNRALGVIE--IFSDAGRFIRPIFDLDK-------- 626
Query: 635 DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 694
I + E W + I YID E I++ + DL +P Y
Sbjct: 627 --ICNFEGEIVPSFKW--FLDNQLIRYIDINEAAANSIAIELRDL---STNPNTRY---- 675
Query: 695 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 754
E+ P + G+ A IIPFPD QS RN + S+M KQA+G +V + + +T+++ L Y
Sbjct: 676 NLMELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIG-FVPCHNLKTETVSHTLNY 734
Query: 755 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 814
PQKPLVTT E+ + P GINAIVAIACY+GYNQEDS+I+N+SSIDRG F ++ + +
Sbjct: 735 PQKPLVTTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNT 794
Query: 815 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 874
+ +EKK G +++E P SN + +R +Y + DG+ RV DV+I K T
Sbjct: 795 FTAQEKKNG-IIEERIEIP--SNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIK 851
Query: 875 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 934
++++ + D S+ ++H E G VD+++ DG R VKV + +R P+IGDKF
Sbjct: 852 NKNQDEKLV------DSSVIVQHGEEGYVDRIVDNV-IDGCRIVKVVIGQMRTPEIGDKF 904
Query: 935 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV--AAHM 992
S QKGT GM + QEDMP+T G+TPDII+NP+ IPSRMTI Q+I +MGK+
Sbjct: 905 CSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLYTVNPN 964
Query: 993 GKEGDATPF---TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1049
+ + F ++ + + L G+ G E MY+G TG R+ + IF+GPTYY RL
Sbjct: 965 PRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRL 1024
Query: 1050 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1109
KHMV DK+H+R G V L RQP GRS+ GGLRFGEME+DC++ HGA+ FL ER+F S
Sbjct: 1025 KHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLNS 1084
Query: 1110 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
D +++ VC+ CG+++ S +C C ++ + +IPY+CK L QEL M I ++
Sbjct: 1085 DPFQIDVCKDCGMMS-----STSKKCHHC-GSINVKRCNIPYSCKNLLQELNGMGIKTKI 1138
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/616 (45%), Positives = 399/616 (64%), Gaps = 22/616 (3%)
Query: 562 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 621
TKI++NG +G +PE V+ +R+ RR +V+ E+ + E+ I+TD GR RPL
Sbjct: 4 TKIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRPL 63
Query: 622 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 681
IVE L+ + + L+ E W DL+A G IEY+D EEEE I+M+ +++
Sbjct: 64 IIVEDGEPLLTEEHLEKLETGEM----SWDDLIAAGIIEYLDAEEEENAYIAMSPDEI-- 117
Query: 682 ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 741
D +TH EI PS +LG+CA IIPF +HN SPRNT ++ M KQA+G+Y +NY
Sbjct: 118 ---------NDEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNY 168
Query: 742 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 801
R DT A++L++PQ P+V TR ++ + + P+G N +VA+ Y GYN ED++I+N++S
Sbjct: 169 DLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKAS 228
Query: 802 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 861
++RG RS FFRSY E++ ++ F P++ Y LD+DG+ P V
Sbjct: 229 LERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEV 288
Query: 862 SGEDVIIGKTTPI----SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 917
S DV+IGKT+P DE A R RR+ S+++RH E G+VD VLLT +G R
Sbjct: 289 SSGDVLIGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEKGIVDAVLLTETVEGSRL 346
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
K+RVR R P++GDKF+SRHGQKG VG+ +QEDMP+T +GI PD+IVNPHAIPSRM++
Sbjct: 347 AKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSV 406
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1037
GQ++E + GK A G+ D TPFT D+I +AL G++ G E++YNG TG R+ A
Sbjct: 407 GQVLEMLAGKAACMEGRRVDGTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEA 466
Query: 1038 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1097
IF+G YYQ+L HM DK+++R RGPVQ+LTRQP EGR+R+GGLRFGEMERDC+IAHGA
Sbjct: 467 EIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGA 526
Query: 1098 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1157
+ LKERL D+SD Y VC CG+IA+ + ++ C C++ ++ V + YA KLL
Sbjct: 527 ALALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICED-SESFPVEVSYAFKLLL 585
Query: 1158 QELMAMAIAPRMLTKE 1173
EL ++ I P+++ ++
Sbjct: 586 DELKSLCIFPKLILED 601
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/617 (46%), Positives = 400/617 (64%), Gaps = 23/617 (3%)
Query: 562 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 621
TKI++NG +G +PE V+ +R RR +V+ E+ + E+ I+TD GR RPL
Sbjct: 4 TKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARRPL 63
Query: 622 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 681
IVE L+K+ + L E W DL+++G IEY+D EEEE T I+M+
Sbjct: 64 IIVEDGEPLLKEEHLEKLSSGEME----WDDLISQGIIEYLDAEEEENTYIAMS------ 113
Query: 682 ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 741
PEE + +TH EI PS +LG+CA IIPF +HN SPRNT ++ M KQA+G+Y +NY
Sbjct: 114 ----PEEV-TEEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNY 168
Query: 742 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 801
R DT A++L++PQ P+V TR ++ + + P+G N +VA+ Y GYN ED++I+N++S
Sbjct: 169 NLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKAS 228
Query: 802 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 861
++RG RS FFRSY E++ ++ F P++ Y LD+DG+ P T V
Sbjct: 229 LERGLARSSFFRSYEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEV 288
Query: 862 SGEDVIIGKTTPI----SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 917
S DV+IGKT+P DE A R RR+ S+++RH E G+VD VLLT +G R
Sbjct: 289 SSGDVLIGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEEGIVDAVLLTETVEGSRL 346
Query: 918 VKVRVRSVRIPQ-IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 976
K+RVR R P+ IGDKF+SRHGQKG VG+ +QEDMP+T +G+ PD+IVNPHAIPSRM+
Sbjct: 347 AKIRVREQRQPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMS 406
Query: 977 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1036
+GQ++E + GK A G+ D TPFT ++ +AL G++ G ET+YNG TG R+
Sbjct: 407 VGQVLEMLAGKAACMEGRRVDGTPFTGEEEKDLKEALKANGFESAGVETLYNGITGERIE 466
Query: 1037 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1096
A IF+G YYQ+L HM D+I++R RGPVQ+LTRQP EGR+R+GGLRFGEMERDC+IAHG
Sbjct: 467 AEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHG 526
Query: 1097 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1156
A+ LKERL D+SD Y VC CG+IAI + ++ C C++ ++ V I YA KLL
Sbjct: 527 AALALKERLLDESDKYEALVCAECGMIAIYDKIRDKKYCPICED-SESFPVEISYAFKLL 585
Query: 1157 FQELMAMAIAPRMLTKE 1173
EL ++ I P+++ ++
Sbjct: 586 LDELKSLCIFPKLVLED 602
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 379/616 (61%), Gaps = 20/616 (3%)
Query: 562 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRP 620
K++VNG VG H +PE L + +R RRR +V+ V V VRD R E+ + D GR RP
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRD-RTGEVIVNADAGRARRP 65
Query: 621 LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 680
L +VE ++ + ++ A++ D + DLV G +E+ID EEEE ++ +
Sbjct: 66 LLVVENGEPVVTQEEVEAVKNG----DIDFEDLVEAGKVEFIDAEEEEDILVGVE----- 116
Query: 681 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 740
EE +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ N
Sbjct: 117 ------EEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAAN 170
Query: 741 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 800
Y+ R DT ++L+YPQK +V T+ E + + PAG N +VA+ Y G+N ED+++MN+
Sbjct: 171 YRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKG 230
Query: 801 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 860
S++R RS FFR+Y EE++ ++ F P +Y LDDDGL P T+
Sbjct: 231 SVERALSRSHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETK 290
Query: 861 VSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 917
V V++GKT+P + + E G S RR+ S+++R E G+VD V L DG +
Sbjct: 291 VDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKL 350
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
KV VR RIP++GDKF+SRHGQKG VG QEDMP+T EG+ PD+++NPHA+PSRMT+
Sbjct: 351 AKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTV 410
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1037
G ++E + GK + G+ D TPFT D I L G++ G E MY+G +G ++ A
Sbjct: 411 GHVLEMLGGKAGSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEA 470
Query: 1038 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1097
IF+G +Y +L HMV +K+H+R +GPVQ+LTRQP EGR+R+GGLR GEMERD +I HGA
Sbjct: 471 EIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGA 530
Query: 1098 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1157
+ LKERL D SD +HVC +CG+ A+ N ++ C C+ +TD+ + + YA KLL
Sbjct: 531 AMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLL 590
Query: 1158 QELMAMAIAPRMLTKE 1173
E+ A+ IAPR+ +E
Sbjct: 591 DEMKALGIAPRLELEE 606
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 379/616 (61%), Gaps = 20/616 (3%)
Query: 562 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRP 620
K++VNG VG H +PE L + +R RRR +V+ V V VRD R E+ + D GR RP
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRD-RTGEVIVNADAGRARRP 65
Query: 621 LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 680
L +VE ++ + ++ A++ D + DLV G +E+ID EEEE ++ +
Sbjct: 66 LLVVENGEPVVTQEEVEAVKNG----DIDFEDLVEAGKVEFIDAEEEEDILVGVE----- 116
Query: 681 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 740
EE +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ N
Sbjct: 117 ------EEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAAN 170
Query: 741 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 800
Y+ R DT ++L+YPQK +V T+ E + + PAG N +VA+ Y G+N ED+++MN+
Sbjct: 171 YRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKG 230
Query: 801 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 860
S++R RS FFR+Y EE++ ++ F P +Y LDDDGL P T+
Sbjct: 231 SVERALSRSHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETK 290
Query: 861 VSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 917
V V++GKT+P + + E G S RR+ S+++R E G+VD V L DG +
Sbjct: 291 VDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKL 350
Query: 918 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 977
KV VR RIP++GDKF+SRHGQKG VG QEDMP+T EG+ PD+++NPHA+PSRMT+
Sbjct: 351 AKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTV 410
Query: 978 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1037
G ++E + GK + G+ D TPFT D I L G++ G E MY+G +G ++ A
Sbjct: 411 GHVLEMLGGKAGSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEA 470
Query: 1038 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1097
IF+G +Y +L HMV +K+H+R +GPVQ+LTRQP EGR+R+GGLR GEMERD +I HGA
Sbjct: 471 EIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGA 530
Query: 1098 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1157
+ LKERL D SD +HVC +CG+ A+ N ++ C C+ +TD+ + + YA KLL
Sbjct: 531 AMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLL 590
Query: 1158 QELMAMAIAPRMLTKE 1173
E+ A+ IAPR+ +E
Sbjct: 591 DEMKALGIAPRLELEE 606
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/619 (44%), Positives = 383/619 (61%), Gaps = 25/619 (4%)
Query: 564 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 623
I+VNG VG PE LV +R RR+ ++ V + ++ I TD GR RPL +
Sbjct: 11 IYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVRPLIV 70
Query: 624 VEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 683
VE + + K I L++ E + DLV +G IEY+D EEEE I+++
Sbjct: 71 VENGKPKLTKEHIEKLKKGEIT----FSDLVKEGVIEYLDAEEEENAYIALS-------- 118
Query: 684 LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 743
EE + +TH EI P ILG+ A + P+P+HN +PR T +AMGKQ++GI ++N ++
Sbjct: 119 ---EEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKW 175
Query: 744 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 803
R+DT + L+YPQ P+V T+ E L F + PAG N +VAI Y GYN ED+++ N+S+ID
Sbjct: 176 RLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAID 235
Query: 804 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 863
RG RS FFR+Y E++ + F PD+ Y L++DG+ + V G
Sbjct: 236 RGLGRSTFFRTYDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKG 295
Query: 864 EDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 920
DVI+GKT+P + + E Q + RRD S+ +RH E G +D+V+LT +G R VKV
Sbjct: 296 GDVIVGKTSPPRFLEEHEITIQV-KPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVKV 354
Query: 921 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 980
+VR +RIP++GDKF+SRHGQKG +G+T QED+P+T GI PDII+NPHAIPSRMT+GQL
Sbjct: 355 KVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQL 414
Query: 981 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1040
+E + GKV A G+ D T F+ ++ KAL G++ G E MY+G TG++ I+
Sbjct: 415 LEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIY 474
Query: 1041 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 1100
+G YYQ+L H+V KIH+R RGPVQ+LTRQP EGR+R+GGLRFGEMERD +I HGA+
Sbjct: 475 IGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAML 534
Query: 1101 LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK------NKTDIVQVHIPYACK 1154
LKERL D+SD Y + +C CG AI + K+ C C + I V IPYA K
Sbjct: 535 LKERLMDESDPYDICICSKCGDFAILDYKRGLKYCPICGEIENLYSSKKIPFVRIPYAFK 594
Query: 1155 LLFQELMAMAIAPRMLTKE 1173
LL EL +M I PR+ ++
Sbjct: 595 LLLDELKSMCILPRIKVRD 613
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/611 (43%), Positives = 388/611 (63%), Gaps = 19/611 (3%)
Query: 563 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 622
++++NG VG H + E L +R LRR+ ++ +V VV E+RI TD GR RPL
Sbjct: 5 RVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLI 64
Query: 623 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 682
+V+ + L+ I +++ E DLV +G IEY+D EEEE +++ ++L
Sbjct: 65 VVKDGKPLVTPEHIEKIKKGELT----IEDLVRQGLIEYLDAEEEENAYVAVYEHELT-- 118
Query: 683 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 742
PE +TH E+ PSLI+G+C IP+ +HN SPRNT +AM KQ++GI +N
Sbjct: 119 ---PE------HTHLELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLA 169
Query: 743 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 802
+R DT +++ +PQ P+VTT + F + PAG N +VA+ Y GYN ED++IMN+ S+
Sbjct: 170 WRTDTRGHLMQHPQVPIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSV 229
Query: 803 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG-SYDKLDDDGLAPPGTRV 861
+RG RS F+R+Y EE + ++ F P ++ G R +Y LD+DGL P T V
Sbjct: 230 ERGLGRSFFYRTYESEEMRYPGGQEDKFEIPG-ADISGFRGAEAYAHLDEDGLIFPETEV 288
Query: 862 SGEDVIIGKTTP--ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 919
+DV+IG+T+P ++ + S RR+ S+++R +E G+VD V L + G + K
Sbjct: 289 GPDDVLIGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAK 348
Query: 920 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 979
VRVR +RIP++GDKF+SRHGQKG VG+ +EDMP+T GI PD+I+NPHAIPSRMT+G
Sbjct: 349 VRVRDLRIPELGDKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGH 408
Query: 980 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1039
++E I GKV + G+ D + F + +++ L K G+ G E MY+G TGRR I
Sbjct: 409 VLEMIGGKVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDI 468
Query: 1040 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1099
F+G YYQ+L HMV KIH+R RGPVQ+LTRQP EGR+R GGLRFGEMERD +I HGA+
Sbjct: 469 FVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAAL 528
Query: 1100 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1159
LK+RL ++SD V VC +CG +A + ++N+ C C ++++I +V + YA KLL E
Sbjct: 529 LLKDRLLEESDKVEVWVCGNCGHVATYDYRRNTAYCHICDDESNIHKVEMSYAFKLLLDE 588
Query: 1160 LMAMAIAPRML 1170
L +M IAPR++
Sbjct: 589 LKSMMIAPRII 599
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/623 (43%), Positives = 379/623 (60%), Gaps = 25/623 (4%)
Query: 560 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 619
+ ++VNG + +DPE LVK+LR RR ++ + + ++ I TD GR R
Sbjct: 3 KQANVYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVR 62
Query: 620 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 679
PL +VE + L ++ + + + LV G IE++D EEEE I+M +++
Sbjct: 63 PLVVVENGFSKLTNE----LLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEI 118
Query: 680 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 739
TH EI P +ILG+ A + P+P+HN +PR T +AMGKQ++GI +
Sbjct: 119 TFEN-----------THVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMA 167
Query: 740 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 799
N ++RMDT ++L+YPQ PLV T+ E L F + PAG N +VA+ Y GYN ED+ ++N+
Sbjct: 168 NIKWRMDTRGHLLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINK 227
Query: 800 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 859
+S++RG RS FFRSY EK+ + F P++ +Y L DDGL +
Sbjct: 228 ASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLES 287
Query: 860 RVSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 916
V DVI+GKT+P + + E Q ++ RRD S+++RH E G+VD V+L+ +G R
Sbjct: 288 EVRSGDVILGKTSPPRFLEEQEITLQ-TKSQRRDTSVTIRHGEEGVVDLVILSETKEGNR 346
Query: 917 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 976
KVRVR +R+P+ GDKF+SRHGQKG +G+ QED+P+T +G+ PD+I+NPHAIPSRMT
Sbjct: 347 LGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMT 406
Query: 977 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1036
IGQ++E I GKV + + D T F+ + AL G+ G ETMY+G TGR+L
Sbjct: 407 IGQVLEMIGGKVGSLECRRVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTGRKLE 466
Query: 1037 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1096
IF+G YYQ+L H+V KIH+R RGP+Q+LTRQP EGR+R+GGLRFGEMERD ++AHG
Sbjct: 467 CEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHG 526
Query: 1097 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ------VHIP 1150
A+ LKERL D+SD + +VC CG IAI + K+ C C DI V I
Sbjct: 527 AALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIA 586
Query: 1151 YACKLLFQELMAMAIAPRMLTKE 1173
YA KLL EL +M I P++ K+
Sbjct: 587 YAFKLLLDELKSMGIDPKLKLKD 609
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust.
Identities = 272/665 (40%), Positives = 381/665 (57%), Gaps = 43/665 (6%)
Query: 517 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWV 571
CGLVKN ALM ++T + P+L G ++ EE++ A + +NG +
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSR---NAYLVLLNGQII 1026
Query: 572 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 631
GIH P+ V TLR++RR + V + ++ + + + D GR RP+ IV+ QR +
Sbjct: 1027 GIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRL 1086
Query: 632 KKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 689
+ I E +DG + D + +G IEY+D EE + ++ E A
Sbjct: 1087 TQEHI------EDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWR-----------EAA 1129
Query: 690 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 749
TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL
Sbjct: 1130 IQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLL 1189
Query: 750 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 809
Y+L + Q+PL TR ++ L++ +LPAG NA VA+ YSGY+ ED+++MN++S+DRGF R
Sbjct: 1190 YLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRC 1249
Query: 810 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 869
+ + KK G + P ++ +R Y LD DG+A PG +++
Sbjct: 1250 IVLKKQVTSIKKHGNDTSDRIFPPTPND---LRQPKYGLLDSDGIAKPGELAQKGQILVN 1306
Query: 870 KTTPISQDEAQGQA-----SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 924
K +P++ +A S Y + + ++ +D+VLLT+ D +K+ +RS
Sbjct: 1307 KYSPLNTIDATPNPELIPDSAY--KSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRS 1364
Query: 925 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 984
R P++GDKFSSRHGQKG G+ QEDMP++ GI PDII+NPH PSRMTIG++IE +
Sbjct: 1365 TRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELL 1424
Query: 985 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1044
GK GK G T F V+NISK L G+ G + + +G TG L IF GP
Sbjct: 1425 AGKAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPI 1484
Query: 1045 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1104
+YQ+LKHMV DK+H+R RGP LTRQP EGR+R GGLR GEMERDC+I +GAS + ER
Sbjct: 1485 FYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMER 1544
Query: 1105 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1164
L SD + V+ C++CG + C+ CK+ DI + IPYACKLLFQEL AM
Sbjct: 1545 LMISSDRFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMN 1598
Query: 1165 IAPRM 1169
I PR+
Sbjct: 1599 IVPRL 1603
Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/511 (30%), Positives = 272/511 (53%), Gaps = 60/511 (11%)
Query: 26 EDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 85
E+ W ++ A+ + +GLV+Q +DSF+ FI M++IV + R ++++P F +
Sbjct: 37 EEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANE----RLTAENDPSYFVRFTD 92
Query: 86 IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV----TKRVIKKGHDGEEVTETQ 141
I + P TE + ++ L P+ RLR++TYSAP++V++ K++I K
Sbjct: 93 INVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISK----------- 141
Query: 142 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 201
V IG +PIMLRSS C L + + + + LGECP D GGYFI+ G EKV++ E++S
Sbjct: 142 --RDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSK 199
Query: 202 NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 261
N + + +S+ P +++ S T + +G ++ Y+
Sbjct: 200 NRIII-----------------EMDSKGLPSASV----TSSTHERKSRTGVTLKNEKLYL 238
Query: 262 R-----TEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQV 314
+ +IP+ IV + +G D+++ + + D + + PSLEE +
Sbjct: 239 KHNTFGEDIPVAIVLKGMGVETDQEMAQLVG---SDDVFLNAITPSLEECQKCGVHTAAQ 295
Query: 315 ALDYIGKRGATV----GVTRDK-RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 369
ALDY+G R GV K + + A++IL +L HV + K Y +I R
Sbjct: 296 ALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRR 355
Query: 370 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV---DNGKD 426
+++ + + DD+D+YGNKR++L+G L+ LF F+K +++ V + + + ++
Sbjct: 356 IIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAEN 415
Query: 427 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 486
++L I+ TIT+G +++++G W R+GVSQVL+RL+Y S + + R+ S
Sbjct: 416 LDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQF 475
Query: 487 GREGKLAKPRQLHNSQWGMMCPAETPEGQAC 517
+ K+A PR L SQWGM+CP++TPEG+AC
Sbjct: 476 EKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 372/1220 (30%), Positives = 570/1220 (46%), Gaps = 173/1220 (14%)
Query: 31 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 90
V SA VR ++SFD+ + N +V + ++ G + F +
Sbjct: 87 VSSANMHPSNFVRHHIESFDDMLWNEFPAMVAREKPVSVK-------GYRVKFGTVRYEP 139
Query: 91 PMMTESDGET-ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF-- 147
P DG+ L P AR + TY + D+T VT+ + V+
Sbjct: 140 PC---PDGKPWEKLTPAMARRTDATYHSAAVCDLT------------VTDPKGLETVYPR 184
Query: 148 --IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 205
+ K+P+M+ S+ C + +E GECP D GGYFII G E+V++ + + +
Sbjct: 185 LELCKIPVMVGSAVC--WTRTEGSPLP-GECPSDPGGYFIIKGKERVVVPHIRPAYDQPC 241
Query: 206 VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 265
V+K N ++ E RS+ + T+ V+ ++T + + + +LPYI+ +
Sbjct: 242 VYK----NGDGWLCEFRSVNRETRQ---TVLVQ--AKTDCR-----RKLEFSLPYIKQYV 287
Query: 266 PIIIVFRALG--------------FVADKDILEHICYDFQDTQMMELLRPSLEEAFV--- 308
P+ +VF+ALG F+ D+ + + +ME + E+
Sbjct: 288 PVGLVFKALGKTAREAVAMCGLGSFLGDEVSCRTVHHQSMAALLMEQHASAPEDPVADLA 347
Query: 309 --------IQNQQVALDYIGKRGATVGVTRDKRIK-----YAKEILQKEMLPHVGTGDFC 355
+ ++Q K V D+ K Y + +L E+ H G
Sbjct: 348 KHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNAKGSKEDYVRHVLAGEIFLHGGDA--- 404
Query: 356 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 415
A + G+++ R+ A G DRD NKR+D GPL+ L L ++ V+
Sbjct: 405 ----AEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLLKQY---VKL 457
Query: 416 YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG---QANAAGTRAGVSQVLNRLTY 472
+V+ + +T+ L ATGNW + R GVSQVL+ Y
Sbjct: 458 FVKSAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVRVGVSQVLSNNNY 517
Query: 473 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 532
+ +SHLRR+ + GK + RQLH+S +G +CP ETPEG+ G+V N+A ++
Sbjct: 518 GARVSHLRRIMHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNMAEGAGFSLE 577
Query: 533 SAAYPILEFLEEW-GTENFEEISPAVIPQA-----TKIFVNGCWVGIHRDPEMLVKTLRR 586
+ +L + G F E +PA + + + V+G G+ DP
Sbjct: 578 TPREVVLATVRLGKGLPGFFEGAPARLAWSGAAGSASVDVDGVLCGVTGDP--------- 628
Query: 587 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQRE 643
VG VR+ RL + + + R + ++ Q +++ + I +
Sbjct: 629 ----------VGFVREARLCLPGVSVVWKKVEREIHLLGCQGRFVRRVLDPEGIRGSGYD 678
Query: 644 SPEDGGWHDL-VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 702
SP D+ + + + +L L E YAD
Sbjct: 679 SPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCSLGDGE-YADPPAS-----E 732
Query: 703 LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 762
++ +S+IPF DH QSPRN YQS MGKQA+G N R D + L YPQK LV +
Sbjct: 733 ILTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVDS 792
Query: 763 RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 822
R+++ L F ++ G +VAI G+NQEDSV++N SS+DRG F + +R+ +K+
Sbjct: 793 RSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCADKRR 852
Query: 823 GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT------RVSGE------------ 864
E PD + R YD L DDG+ P RV G+
Sbjct: 853 TKYDSEVVCLPDWG--LRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRPAGQRT 910
Query: 865 ----------------DVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 908
V++GK + + G RRD S++++ SE G +D+V +
Sbjct: 911 GGGPAGLCDALWIPAGTVLVGKVS-----HSLGPGGNPMRRDVSLTVKQSEEGYLDRVTV 965
Query: 909 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 968
++DG + VKVR+R+ R P++GDKF+S QKGT G TQEDMP+ +G+ PD+I+NP
Sbjct: 966 DVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINP 1025
Query: 969 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVDNISKALHKCGYQMRGFETMY 1027
HA PSRMT+ L++ G A +GK DAT F + V +I++A + G ++
Sbjct: 1026 HAFPSRMTVNYLLQMCFGTAACKLGKTYDATAFEREDVVRDIAEAAKEAGIDCWD-SVLH 1084
Query: 1028 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1087
+G TGRRL IF+ P YQRLKHMV K+HSR GP LTRQP GRSR+GG++ GEM
Sbjct: 1085 SGSTGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEM 1144
Query: 1088 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE-CRGCKNKTDIVQ 1146
E+ C I+HGAS LKE ++D SD Y V VC+ CG I+ + FE CR C + TD+
Sbjct: 1145 EQWCKISHGASESLKESVYDMSDKYEVPVCKECGRIS------DHFEYCRMC-DATDMSL 1197
Query: 1147 VHIPYACKLLFQELMAMAIA 1166
V +PY K+LFQEL ++ I+
Sbjct: 1198 VKLPYTTKILFQELRSIGIS 1217
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 363/1262 (28%), Positives = 587/1262 (46%), Gaps = 143/1262 (11%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 EAVNNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 124
+ + Q +F ++ + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 125 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 182
VI H +G + + + PIM S+ C Y S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKEIGEDPNEPGG 191
Query: 183 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 240
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 295
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFM 305
Query: 296 MELLRPSLEEAFVI-------QNQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 339
+E+L S+ + I N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 340 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 398
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 399 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 455
F+ +F + + ++ K++ Q A + + I +L+ + N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDLN 479
Query: 456 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNSPIGREG-----KL 492
+ ++ +S Q L R +T+S LR +N+ +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERA 539
Query: 493 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 550
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 551 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 607
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 608 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 650
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTRFTS 716
Query: 651 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 697
DLVA+G E+I EE E +++ +I +L R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSITEL---RKHKHDV-TRRFTHV 772
Query: 698 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 757
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 758 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 817
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 818 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 936
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 937 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 997 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1055
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1056 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1115
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1116 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1168
+C +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 ICRNCGEPAIYNASHPIYKCMNCDVQADISMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1169 ML 1170
+
Sbjct: 1238 VF 1239
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust.
Identities = 362/1262 (28%), Positives = 586/1262 (46%), Gaps = 143/1262 (11%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 124
+ + Q +F ++ + +P S G L P ARL L+YS P V +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLSGLSYSGP--VKLA 131
Query: 125 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 182
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHDLSKTAKKEIGEDPNEPGG 191
Query: 183 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 240
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 295
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFM 305
Query: 296 MELLRPSLEEAFVI-------QNQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 339
+E+L S+ + I N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 340 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 398
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 399 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 455
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 456 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNSPIGREG-----KL 492
+ ++ +S Q L R +T+S LR +N+ +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERA 539
Query: 493 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 550
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 551 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 607
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 608 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG--W--------------- 650
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNEACYKAAEARKKGNKDWEKHKISFVQNTRFTS 716
Query: 651 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 697
DLVA+G E+I EE E +++ +I +L R H + +TH
Sbjct: 717 QMAKAILAGTLTLEDLVAQGICEFITPEEAENCLVAFSITEL---RKHKHDV-TRRFTHV 772
Query: 698 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 757
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQSILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 758 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 817
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 818 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 936
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 937 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 997 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1055
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1056 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1115
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1116 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1168
+C +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 ICRNCGEPAIYNASHPIYKCMNCDVQADISMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1169 ML 1170
+
Sbjct: 1238 VF 1239
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust.
Identities = 364/1262 (28%), Positives = 590/1262 (46%), Gaps = 143/1262 (11%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 124
+ + Q +F ++ + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 125 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 182
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGG 191
Query: 183 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 240
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 295
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFM 305
Query: 296 MELLRPS---LEEAF-VIQ---NQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 339
+E+L S L+ F +Q N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 340 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 398
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 399 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 455
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 456 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKL 492
+ ++ +S Q L R +T+S LR +N+ + +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERA 539
Query: 493 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 550
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 551 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 607
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 608 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 650
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTS 716
Query: 651 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 697
DLVA+G E+I EE E +++ +I ++ R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHV 772
Query: 698 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 757
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 758 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 817
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 818 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 936
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 937 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 997 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1055
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1056 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1115
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1116 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1168
VC +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 VCRNCGEPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1169 ML 1170
+
Sbjct: 1238 VF 1239
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust.
Identities = 364/1262 (28%), Positives = 590/1262 (46%), Gaps = 143/1262 (11%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 124
+ + Q +F ++ + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 125 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 182
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGG 191
Query: 183 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 240
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 295
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFM 305
Query: 296 MELLRPS---LEEAF-VIQ---NQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 339
+E+L S L+ F +Q N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 340 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 398
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 399 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 455
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 456 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKL 492
+ ++ +S Q L R +T+S LR +N+ + +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERA 539
Query: 493 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 550
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 551 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 607
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 608 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 650
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTS 716
Query: 651 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 697
DLVA+G E+I EE E +++ +I ++ R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHV 772
Query: 698 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 757
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 758 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 817
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 818 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 936
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 937 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 997 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1055
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1056 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1115
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1116 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1168
VC +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 VCRNCGEPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1169 ML 1170
+
Sbjct: 1238 VF 1239
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 360/1262 (28%), Positives = 586/1262 (46%), Gaps = 143/1262 (11%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 124
+ + Q +F ++ + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 125 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 182
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGG 191
Query: 183 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 240
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 241 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 295
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFM 305
Query: 296 MELLRPSLEEAFVI-------QNQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 339
+E+L S+ I N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVLDPIFQPVQHEPNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 340 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 398
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 399 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 455
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 456 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKL 492
+ ++ +S Q L R +T+S LR +N+ + +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERA 539
Query: 493 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 550
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 551 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 607
++S I + ++F+NG W+G + L + R RR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDE 659
Query: 608 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 650
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTS 716
Query: 651 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 697
DLVA+G E+I EE E +++ +I ++ R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHV 772
Query: 698 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 757
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 758 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 817
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 818 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 936
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 937 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 996
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 997 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1055
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1056 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1115
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1116 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1168
+C +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 ICRNCGEPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1169 ML 1170
+
Sbjct: 1238 VF 1239
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 345/1193 (28%), Positives = 545/1193 (45%), Gaps = 129/1193 (10%)
Query: 37 EEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ-QSDFAEIYLSKPMMTE 95
E K L++ +DSFD F + + ++ +S + +HN Q + F ++ LS+P
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYF----EHNSTQYKIRFTDLKLSRPTRNI 59
Query: 96 SDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTET----QDFTKVF---I 148
+ E L+P +R TY+AP + + + + ++ TE Q+ T F +
Sbjct: 60 VEKEIK-LYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDL 118
Query: 149 GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 208
G++PIM++S YC L S + L E E +QGGYFI+NG+EKV+ NH
Sbjct: 119 GRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALH 178
Query: 209 K-----RQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 263
+ R P +R + RP + L + G ++ +++ Y R
Sbjct: 179 RKAWTNRGPGYTKNGITIRCV-----RPDRSSITNNLHYIN-DGQTTLRFL-----YRRQ 227
Query: 264 E--IPIIIVFRALGFVADKDILEHICY-DFQDTQMMELLRPSLEEAFV--IQNQQVALDY 318
E +P ++ +AL +K+I E+I D ++T + + + SL E + I Q+ LDY
Sbjct: 228 EFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDY 287
Query: 319 IGKR--GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 376
IG R T IK + + + + H+ + K +I +L G
Sbjct: 288 IGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMIQKLYAMVGG 343
Query: 377 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-------DVNL 429
+ D+ D + + LAG + G + + + +++V K ++ K D
Sbjct: 344 KCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALK 403
Query: 430 QFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPI 486
+ K I Y LATGN ++ + +G + ++L + +SH R ++
Sbjct: 404 KVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAF 463
Query: 487 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE------ 540
K R+L WG CP TP+G CGL+ +L+ +TV +A P ++
Sbjct: 464 FATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLL 523
Query: 541 --FLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTLRRLRRRVDVNTE 596
FL G + +S Q I ++G +G + E +VK LR LR + E
Sbjct: 524 PSFLAAHGMLPIDMVS-VYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLR---SMGNE 579
Query: 597 VGVVRDIRLKELR-IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 655
+ + + + + G+ S R + R ++ L ++
Sbjct: 580 PSIPKTMEISYAPPTNVENGQYSGISLFTTGARFM---RPVVNLTSGQN----------- 625
Query: 656 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 715
E I +E+ I++ P E TH E P+ + + A++ PF
Sbjct: 626 ----ELIGPQEQLYMEIAVV----------PHEVIKGVTTHIETSPTAMFSLLANLTPFS 671
Query: 716 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 775
D+NQSPRN YQ M KQ MG + +Y FR D Y + QKP+V T+ P
Sbjct: 672 DYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPH 731
Query: 776 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR-SLFFRSYRDEEKKMGTL--VKEDFGR 832
G NA++A+ +GY+ ED++I+N+S+ +RGF S++ Y D ++ + K FGR
Sbjct: 732 GCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGR 791
Query: 833 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 892
P NT+ + +D DGL G + + P R +D+
Sbjct: 792 P---NTVVDELDKF--IDTDGLPFVGRLIKPGEPYYTYIRP--------SDGRQVTKDY- 837
Query: 893 ISLRHSETGMVDQVLLTTNADG-------LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 945
+ E ++ V + +G + + V++R R P IGDKFSSRHGQKG +
Sbjct: 838 ---KGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLS 894
Query: 946 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF---- 1001
+ + +MP+T G+ PD+I+NP+A PSRMTIG L+E + GK A GK DAT F
Sbjct: 895 QLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDE 954
Query: 1002 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1061
+ +D + L K G+ G E MY+G TG+ IF G YYQRL+HMV DK R
Sbjct: 955 NNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRA 1014
Query: 1062 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 1121
G V LTRQP +GR GG+RFGEMERD ++AHGAS L +RL SD ++ VC+ CG
Sbjct: 1015 LGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCG 1074
Query: 1122 LIAIANLKKN-----SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
KK+ EC+ CK+ I + IPY L EL A+ I ++
Sbjct: 1075 STLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKL 1127
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 335/1095 (30%), Positives = 518/1095 (47%), Gaps = 140/1095 (12%)
Query: 84 AEIYLSKPMMTESDGETA----TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-T 138
++ L+KPM +DG TA +FP AR R TY L + + V +DGEE +
Sbjct: 94 TQVSLTKPM--SNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSV----NDGEETFS 147
Query: 139 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIA 195
E +D G +P+ML+S+ C L++ S ++L E E + GGYFI+NG EK+ LI
Sbjct: 148 EVRD-----CGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRMLIV 202
Query: 196 QEKMSTNHVYV-----FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 250
Q + NH F R + Y ++R + RP T +L +
Sbjct: 203 QRR---NHPMAIIRPSFANRGTSYSHYGVQIRCV-----RPDQTSQTNVLHYLN-----D 249
Query: 251 GQYIRATLPYIRTE--IPIIIVFRALGFVADKDILEHIC-YDFQD---TQMMELLRPSLE 304
GQ + + + E +P++++ +AL +D++I + I D + T +ELL +
Sbjct: 250 GQ-VTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFK 308
Query: 305 EAFV-IQNQQVALDYIGKRGATVGVTRDKRIKY--AKEILQKEMLPHVGTGDFCETKKAY 361
+ F + N++ L Y+G + V Y +E+L++ +L H+G + T K+
Sbjct: 309 KRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDEN---TDKSN 365
Query: 362 YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 421
++I +L G D+ D ++ + L G L G + + + ++++ +Q V
Sbjct: 366 MLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADV 425
Query: 422 DNGKDVNLQ---FAIKAKT-----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLT 471
+ G V+ + + + T I S L+Y L+TGN + + +G + V ++
Sbjct: 426 NRGMPVDFKDRKYMTRVLTRINENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKIN 485
Query: 472 YASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI- 529
+ +SH R ++ + K R+L WG +CP TP+G CGL+ + A I
Sbjct: 486 FYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIS 545
Query: 530 TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTLR-- 585
T S I L G ++ A P + ++G VG H ++ TLR
Sbjct: 546 TTQSDVSKIPTLLYSLGVSPAAHVT-AAGPSLCCVQLDGKIVGWCSHEQGRIVADTLRYW 604
Query: 586 RLRRRVD---VNTEVGVVRDIRLKE---LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL 639
++ + D ++ E+G V + + L ++ + R RP+ + L + K+DI+
Sbjct: 605 KVEGKTDGLPLDLEIGYVPASKRGQYPGLYLFGGHSRMMRPV-----RYLPLDKQDIVG- 658
Query: 640 QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEI 699
P + + D+ PEE + +TH E
Sbjct: 659 -----PFEQVYMDIAVT-----------------------------PEEIQNNVHTHVEF 684
Query: 700 HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 759
P+ IL + A++ PF D NQSPRN YQ MGKQ MG R D Y L Q P+
Sbjct: 685 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744
Query: 760 VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE- 818
V + P G NA+VA+ Y+GY+ +D++I+N+S+ +RGF +++ + +
Sbjct: 745 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804
Query: 819 --EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 876
+ G V + FG T +KLD+DGL G+ V D I
Sbjct: 805 SLSRGRGDPVTQHFG----FGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYF----- 855
Query: 877 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFVKVRVRSVRIPQIGD 932
D+ + T HS SE +++V L + L+++ ++ R R+PQIGD
Sbjct: 856 DDTLNKTKIKTY--HS-----SEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGD 908
Query: 933 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 992
KFSSRHGQKG + DMP++ GI PD+I+NPHA PSRMTIG +E + GK A
Sbjct: 909 KFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALH 968
Query: 993 GKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1048
G DATP+T D D L K GY G E MY+G TG L A I++G YYQR
Sbjct: 969 GIAQDATPWTFSEEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQR 1028
Query: 1049 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1108
L+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I HG S L++RL +
Sbjct: 1029 LRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNS 1088
Query: 1109 SDAYRVHVCEHCGLI 1123
SD + VC CG I
Sbjct: 1089 SDYTQSAVCRECGSI 1103
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust.
Identities = 346/1208 (28%), Positives = 546/1208 (45%), Gaps = 133/1208 (11%)
Query: 5 DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
D+D E + E+ + T A+ + A V ++SF+ ++ + + +
Sbjct: 12 DWDVEFNQVRREKLFRDPPTDRTAYPALQA------AVDPHIESFNALFRDDGKPSLLDH 65
Query: 65 ADIEIRPESQHNPGQQSD----------FAEIYLSKPMMTESD--GETATLFPKAARLRN 112
A EI ++ + +++D + I L K + ++ + +FP R R+
Sbjct: 66 ALAEIGTKTFLDGDERADPQGKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERH 125
Query: 113 LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 172
++Y L R+ +DGE +F + +G++PIM++S+ C L NS L
Sbjct: 126 VSYRGKLSATFEYRI----NDGEP----HEFVRE-LGQMPIMVKSNKCHLQNNSPAQLVA 176
Query: 173 LGECPYDQGGYFIINGSEKV----LIAQEKMSTNHVY-VFKKRQPNKYAYVAEVRSMAES 227
E + GGYFI+NG EK+ L+ + V F+ R + Y +RS+
Sbjct: 177 RKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSV--- 233
Query: 228 QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 287
RP T +L S G + ++ Y+ IP++++ +AL D++I E +
Sbjct: 234 --RPDETSQTNVLHYLS-DGNVTFRFSWRKNEYL---IPVMMIMKALVETNDREIFEGLV 287
Query: 288 YDFQD--------TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKY--A 337
Q T +ELL + ++ + Q Y+G++ V D Y
Sbjct: 288 GPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRA-YLGQKFRVVLGVPDTMSDYEVG 346
Query: 338 KEILQKEMLPHVGTGDFCETKKAYYFG---YIIHRLLLCALGRRAEDDRDHYGNKRLDLA 394
E L+K +L H+G+ D E + A F ++ +L G A D+ D N+ + L
Sbjct: 347 TEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLG 406
Query: 395 GPLLGGLFR-MLFRKLTRDVRAYVQKCVDNGKDVNLQ------------FAIKAKTITSG 441
G L G + + L LT RA ++ + V+ Q F + I
Sbjct: 407 GFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTFLKDFPIAIFRRANENIGQS 466
Query: 442 LKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQL 498
L+Y L+TGN + + +G + V +L + +SH R ++ + K R+L
Sbjct: 467 LEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKL 526
Query: 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA-AYPILEFLEEWGTENFEEISPAV 557
WG +CP TP+G CGL+ +LA I S A I E G N IS A
Sbjct: 527 LPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVN---ISSAA 583
Query: 558 IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 617
++ + ++G VG E K++ R VN E GV ++L+ + G
Sbjct: 584 TSESVVVMLDGRIVGWCTPEE--CKSIAETLRYWKVNGENGV--PLQLEIGYVPPSNGGS 639
Query: 618 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 677
L++ + +++ + LQ+ + ++ +E+ I+ T
Sbjct: 640 YPGLYMSSQPARMVRPVKYLPLQKED-----------------FVGPQEQPYMSIACTEQ 682
Query: 678 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 737
+++ P ++ TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG
Sbjct: 683 EVI-----PGDS-----THVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTP 732
Query: 738 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 797
T R D Y L Q P+V F P G+NA+VA+ Y+GY+ +D++I+
Sbjct: 733 ATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIL 792
Query: 798 NQSSIDRGFFRSLFFRSYR-----DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 852
N+S+ +RGF +++ + D + + + FG S +R + D LD+D
Sbjct: 793 NKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNST---IRESTRDMLDND 849
Query: 853 GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 912
GL G + DVI T +S D GQ H + SE V++V +
Sbjct: 850 GLPRVGRLLREGDVICAWHT-VSAD-YNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGAD 907
Query: 913 DG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 969
+G L+ V +++R R P IGDKFSSRHGQKG + + DMP++ GI PD+I+NPH
Sbjct: 908 NGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPH 967
Query: 970 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFET 1025
A PSRMTIG +E + GK A G D+TPF + D L K GY G E
Sbjct: 968 AFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEP 1027
Query: 1026 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1085
+Y+G TG A I++G YYQRL+HMV+DK R GPV T QP +GR + GG+R G
Sbjct: 1028 LYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVG 1087
Query: 1086 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF----------EC 1135
EMERD ++AHG S L++RL + SD + +C CG + F C
Sbjct: 1088 EMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLSTQPTVSPFIGKRKAVSTVRC 1147
Query: 1136 RGCKNKTD 1143
R C + D
Sbjct: 1148 RNCAVRLD 1155
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 338/1131 (29%), Positives = 501/1131 (44%), Gaps = 155/1131 (13%)
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 158
+++P R R TY L D++ V I KG K F+G VPIM++S
Sbjct: 96 VSVYPAECRGRRCTYRGKLTADISWAVNGISKG-----------IIKQFLGYVPIMVKSK 144
Query: 159 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV--LIAQEKMSTNHVYV---FKKRQPN 213
C LY + L E E + GGYFIING EKV ++ + + V +K R P
Sbjct: 145 LCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPG 204
Query: 214 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 272
Y + + E + V M G +I R L ++ P+ +
Sbjct: 205 YTHYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 254
Query: 273 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGK-RGATV 326
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 255 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 312
Query: 327 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 313 NVPDWYPNEQAAEFLFNQCICIHLKS----NTEKFYMLCLMTRKLFALAKGECMEDNPDS 368
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVR-AYVQKCVDNGKDVNLQFAIKAKT----ITS 440
N+ + G L + ++ A+ +K +N ++ T +T
Sbjct: 369 LVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTK 428
Query: 441 GLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK---- 494
+Y ATGN G +G+ V ++L + LSH R ++ R AK
Sbjct: 429 PFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVH----RGADFAKMRTT 484
Query: 495 -PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGSAAYPILEFLEEWGTENF 550
R+L WG +CP TP+G+ CGL+ +L + + V +A+ P L L G
Sbjct: 485 TVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL--LCNLGVTPI 542
Query: 551 EEISPAVIPQATKIFVNGCWVGIHRDPEM---LVKTLRRLR----RRVDVNTEVGVV--- 600
+ + + ++G VG D E+ + +LR + +R+ TEV ++
Sbjct: 543 DGAPHRSYSECYPVLLDGVMVG-WVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMT 601
Query: 601 -RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 659
+ L ++T R RP+ Q L + K ++I G +
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRPV-----QNLELGKEELI-------------------GTM 637
Query: 660 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 719
E I + + +E +A TH E+ P +L V A+ IPF DHNQ
Sbjct: 638 EQI----------------FMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQ 681
Query: 720 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 779
SPRN YQ MGKQ MG + YQ R D Y L PQ PLV ++ P G NA
Sbjct: 682 SPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNA 741
Query: 780 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 839
IVA+ Y+GY+ ED++I+N++S +RGF Y+ E + +K+ D S
Sbjct: 742 IVAVISYTGYDMEDAMIVNKASWERGFAHG---SVYKSEFIDLSEKIKQG----DSSLVF 794
Query: 840 GMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 896
GM+ G KLDDDGL G ++ D + T + +
Sbjct: 795 GMKPGDPRILQKLDDDGLPFIGAKLQ------------YGDPYYSYLNLNTGESFVMYYK 842
Query: 897 HSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 953
E +VD + + +N G + V + +R R P IGDKF+SRHGQKG + + EDM
Sbjct: 843 SKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDM 902
Query: 954 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNI 1009
P+T G+ PDI+ NPH PSRMTIG LIE + GK AA G DATPF + ++
Sbjct: 903 PFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYF 962
Query: 1010 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1069
+ L GY G E +Y+G +G L A IF+G YYQRL+HMV DK R G +T
Sbjct: 963 GEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022
Query: 1070 RQPAEGRSRDGGLRFGEMERDCMIAHGASHF-LKERLFDQSDAYRVHVCEHCGLI----- 1123
QP GR+ GG+RFGEMERD ++AHG S F L +RLF+ SD HVC CG +
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLL 1082
Query: 1124 -----AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
+ + ++ + C C I V +PY + EL AM I ++
Sbjct: 1083 EKPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1133
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 335/1135 (29%), Positives = 509/1135 (44%), Gaps = 166/1135 (14%)
Query: 102 TLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 159
++P R R TY L D++ V + KG K F+G VPIM++S
Sbjct: 97 NVYPAECRGRKSTYRGRLTADISWAVNGVPKG-----------IIKQFLGYVPIMVKSKL 145
Query: 160 CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL----IAQEKMSTNHVYV-FKKRQPNK 214
C LY + L E E + GGYFIING EKV+ + + V +K R
Sbjct: 146 CNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGY 205
Query: 215 YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFRA 273
+ +R + E + V M G +I R L ++ P+ +A
Sbjct: 206 TQFGVSMRCVREEHSA------VNMNLHYVENGTVMLNFIYRKELFFL----PLGFALKA 255
Query: 274 LGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGV 328
L +D I + + F + ++LR +EE +Q+ L+Y+G+
Sbjct: 256 LVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEG--CHSQKQVLNYLGECFRVKLS 313
Query: 329 TRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 386
D ++ A+ +L + + H+ + T K Y + +L A G +D+ D
Sbjct: 314 LPDWYPNVEAAEFLLNQCICIHLQS----NTDKFYLLCLMTRKLFALARGECMDDNPDSL 369
Query: 387 GNKRLDLAGPLLGGLFRMLFR----------KLTRDVRAYVQKCVDNGKDVNLQFAIKAK 436
N+ ++ P G LF M + K+ D RA N +++ F++ +
Sbjct: 370 VNQ--EVLSP--GQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE 425
Query: 437 TITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 494
+T +Y LATGN G +G+ V ++L + LSH R ++ R AK
Sbjct: 426 -LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVH----RGAAFAK 480
Query: 495 -----PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGSAAYPILEFLEEWG 546
R+L WG +CP TP+G CGL+ +L + + V +A+ P L L G
Sbjct: 481 MRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL--LCGLG 538
Query: 547 TENFEEISPAVIPQATKIFVNGCWVG-IHRD--PEMLVKTLRRLR----RRVDVNTEVGV 599
+ + ++G VG + +D PE + TLRR + +R+ EV +
Sbjct: 539 VTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPE-VADTLRRFKVLREKRIPPWMEVAL 597
Query: 600 V----RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 655
+ + L ++T R RP+ Q L + + ++I
Sbjct: 598 IPMTGKPSLYPGLFLFTTPCRLVRPV-----QNLELGREELIG----------------- 635
Query: 656 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 715
TM + +N + +E + TH E+ P +L V A+ IPF
Sbjct: 636 --------------TMEQLFMN----VAIFEDEVFGGISTHQELFPHSLLSVIANFIPFS 677
Query: 716 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 775
DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV + P
Sbjct: 678 DHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPI 737
Query: 776 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEEKKMGTLVKEDFGRPD 834
G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D + E F + +
Sbjct: 738 GTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID--------LSEKFKQGE 789
Query: 835 RSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDH 891
+ G++ G KLDDDGL G ++ D ++ + +G Y +++
Sbjct: 790 DNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSY---LNLNTGEGFVVYYKSKEN 846
Query: 892 SISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 948
+ VD + + +N G + + + VR R P IGDKF+SRHGQKG + +
Sbjct: 847 CV---------VDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLW 897
Query: 949 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DV 1004
EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G DATPF +
Sbjct: 898 PAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENS 957
Query: 1005 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1064
++ + L GY G E +Y+G +G L A IF+G YYQRL+HMV DK R G
Sbjct: 958 ALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGA 1017
Query: 1065 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI- 1123
+T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ SD H+C CG +
Sbjct: 1018 RDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLL 1077
Query: 1124 ---------AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
+ + ++ + C C I V +PY + EL AM I ++
Sbjct: 1078 SPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 338/1134 (29%), Positives = 497/1134 (43%), Gaps = 162/1134 (14%)
Query: 101 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 158
A ++P R R TY L D+ V I KG K F+G VPIM++S
Sbjct: 96 ANVYPAECRGRRSTYRGKLTADINWAVNGISKG-----------IIKQFLGYVPIMVKSK 144
Query: 159 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV-----FKKRQPN 213
C L + L E E + GGYFIING EKV+ N +K R P
Sbjct: 145 LCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPG 204
Query: 214 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 272
Y + + E + V M G +I R L ++ P+ +
Sbjct: 205 YTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 254
Query: 273 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGK-RGATV 326
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 255 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 312
Query: 327 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 313 NVPDWYPNEQAAEFLFNQCICIHLKS----NTEKFYMLCLMTRKLFALAKGECMEDNPDS 368
Query: 386 YGNKRLDLAGPLLGGLFRMLFR----------KLTRDVRAYVQKCVDNGKDVNLQFAIKA 435
N+ ++ P G LF M + K+ D +A + V D ++
Sbjct: 369 LVNQ--EVLTP--GQLFLMFLKEKLEGWLVSIKIAFDKKAQ-KTSVSMNTDNLMRIFTMG 423
Query: 436 KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 493
+T +Y ATGN G +G+ V ++L + LSH R ++ R A
Sbjct: 424 IDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVH----RGADFA 479
Query: 494 K-----PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGSAAYPILEFLEEW 545
K R+L WG +CP TP+G+ CGL+ +L + + V +A+ P L L
Sbjct: 480 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL--LCNL 537
Query: 546 GTENFEEISPAVIPQATKIFVNGCWVG-IHRD-PEMLVKTLRRLR----RRVDVNTEVGV 599
G + + + ++G VG + +D + +LR + +R+ EV +
Sbjct: 538 GVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVL 597
Query: 600 V----RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 655
+ + L ++T R RP+ Q L + K ++I
Sbjct: 598 IPMTGKPSLYPGLFLFTTPCRLVRPV-----QNLALGKEELI------------------ 634
Query: 656 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 715
G +E I + + +E +A TH E+ P +L V A+ IPF
Sbjct: 635 -GTMEQI----------------FMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFS 677
Query: 716 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 775
DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV ++ P
Sbjct: 678 DHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPI 737
Query: 776 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 835
G NAIVA+ Y+GY+ ED++I+N++S +RGF Y+ E + +K+ D
Sbjct: 738 GTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG---SVYKSEFIDLSEKIKQG----DS 790
Query: 836 SNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 892
S G++ G KLDDDGL G ++ D + T
Sbjct: 791 SLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ------------YGDPYYSYLNLNTGESFV 838
Query: 893 ISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 949
+ + E +VD + + +N G + V + +R R P IGDKF+SRHGQKG + +
Sbjct: 839 MYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 950 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVT 1005
EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G DATPF +
Sbjct: 899 AEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSA 958
Query: 1006 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1065
++ + L GY G E +Y+G +G L A IF+G YYQRL+HMV DK R G
Sbjct: 959 LEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGAR 1018
Query: 1066 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-- 1123
+T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ SD HVC CG +
Sbjct: 1019 DRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLS 1078
Query: 1124 --------AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1169
+ + ++ + C C I V +PY + EL AM I ++
Sbjct: 1079 PLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 322/1094 (29%), Positives = 510/1094 (46%), Gaps = 139/1094 (12%)
Query: 85 EIYLSKPMMTESDGETATL----FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE-VTE 139
++ ++KPM +DG ++ + +P +R R +Y L + + V ++GEE + E
Sbjct: 101 QVSIAKPM--SNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSV----NNGEENLFE 154
Query: 140 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQ 196
+D G +P+ML+S+ C L + S +L + E + GGYFI+NG EK+ LI Q
Sbjct: 155 VRD-----CGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQ 209
Query: 197 EKMSTNHVYV-----FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 251
+ NH F R + Y ++RS+ RP T +L + G
Sbjct: 210 RR---NHPMAIIRPSFANRGASYSHYGIQIRSV-----RPDQTSQTNVLHYLN-----DG 256
Query: 252 QYIRATLPYIRTE--IPIIIVFRALGFVADKDILEHIC-YDFQD---TQMMELLRPSLEE 305
Q + + + E +P++++ +AL +D++I + I D +D T +ELL ++
Sbjct: 257 Q-VTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKK 315
Query: 306 AFV-IQNQQVALDYIGKRGATV--GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 362
+ +QN+ L Y+G + V ++ +E+L + +L H+G + +
Sbjct: 316 RYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLL 375
Query: 363 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 422
F +I +L G + D+ D ++ + L G L G + + + +++ A V+ ++
Sbjct: 376 F--MIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDIN 433
Query: 423 NGKDVNLQ--------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTY 472
G +N + + I S ++Y L+TGN + + +G + V ++ +
Sbjct: 434 RGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 493
Query: 473 ASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-T 530
+SH R ++ + K R+L WG +CP TP+G CGL+ + A I T
Sbjct: 494 YRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST 553
Query: 531 VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTLRRLR 588
S I L G + A P + ++G +G H +++ TLR +
Sbjct: 554 QQSDVSRIPSILYSLGVAPASH-TFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWK 612
Query: 589 RR-----VDVNTEVGVVRDI---RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 640
+ ++ E+G V + L ++ + R RP+ + L + K DI+
Sbjct: 613 VEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPV-----RYLPLDKEDIVG-- 665
Query: 641 QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 700
E+ I++T P+E + +TH E
Sbjct: 666 -----------------------PFEQVYMNIAVT----------PQEIQNNVHTHVEFT 692
Query: 701 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 760
P+ IL + A++ PF D NQSPRN YQ MGKQ MG R D Y L Q P+V
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 761 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE-- 818
+ P G NA+VA+ Y+GY+ +D++I+N+S+ +RGF +++ + +
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 819 -EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 877
+ G + + FG + +KLD+DGL GT V D I D
Sbjct: 813 LNRNRGDPITQHFGFGNDE----WPKEWLEKLDEDGLPYIGTYVEEGDPICAYF-----D 863
Query: 878 EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFVKVRVRSVRIPQIGDK 933
+ + T HS SE +++V L + L+ V ++ R R PQIGDK
Sbjct: 864 DTLNKTKIKTY--HS-----SEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDK 916
Query: 934 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 993
FSSRHGQKG + DMP++ GI PDII+NPHA PSRMTIG +E + GK A G
Sbjct: 917 FSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHG 976
Query: 994 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1049
D+TP+ D D + L K GY G E MY+G TG L A I++G YYQRL
Sbjct: 977 IAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRL 1036
Query: 1050 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1109
+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I HG S L++RL + S
Sbjct: 1037 RHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSS 1096
Query: 1110 DAYRVHVCEHCGLI 1123
D + VC CG I
Sbjct: 1097 DYTQASVCRECGSI 1110
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 328/1196 (27%), Positives = 534/1196 (44%), Gaps = 173/1196 (14%)
Query: 45 QLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS---DFAEIYLSKPMMTES--DGE 99
+DSFDE + + D SA I P +P + I+++KP + + D
Sbjct: 39 HVDSFDEMLTVGL----DNSAKHMI-PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVR 93
Query: 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 159
T ++P +R +++YS V + V +G + T + +G+VPIMLRS
Sbjct: 94 TREIYPTDSRQLHVSYSGMCSVRLGWSV-----NGVQKTPIN----MDLGEVPIMLRSKA 144
Query: 160 CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH-VYVFKKRQPNKYAYV 218
C L Q + +++ + GE + GG F+I G+EK++ NH + V + ++
Sbjct: 145 CNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNF 204
Query: 219 AEVRSMAESQNRPPSTM--FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 276
+++ + ++ S++ V L+ +AK S +++ L Y+ P+ ++ + L
Sbjct: 205 SDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFS--HVK-RLSYV----PVCLILKCLMD 257
Query: 277 VADKDILEHICYDFQDTQM-MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 335
D++I + ++ Q + ++ L E +QN+ V K + +G R
Sbjct: 258 YTDEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTHAQCK--SFIGNLFRARFP 312
Query: 336 YAKE----------ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 385
E IL++ ++ H+ T + K ++I +L CA G+ ++ D
Sbjct: 313 EVPEWQPDDDVTDFILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDS 368
Query: 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN-----GKDVNLQFAIKAKTITS 440
+ + L G L VR +QK + + V Q +A +
Sbjct: 369 AMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGR 428
Query: 441 GLKYSLATGNWGQANAAGTRAG-----VSQVLNRLTYASTLSHLRRLN-SPIGREGKLAK 494
++ LATGN G +++ +NR+ Y +SH R ++ + +
Sbjct: 429 AIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY---MSHFRAIHRGSYFTTMRTTE 485
Query: 495 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 554
RQL WG +CP TP+G CGL+ +L L I++ + + I
Sbjct: 486 ARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHL-------ID 538
Query: 555 PAVIPQATK---------IFVNGCWVG-IHR-DPEMLVKTLR--RLRRRVDVNTEVGVV- 600
++P + + +F++G +G IH+ + E +V LR ++ + E+G +
Sbjct: 539 MGMMPLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIP 598
Query: 601 --RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 658
++ + L I T R RP++ ++ +R
Sbjct: 599 FKKNGQFPGLYIATGPARMMRPVWNLKWKR------------------------------ 628
Query: 659 IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 718
+EYI T E+ I+ + +E Y D TH E+ + + A++IP PD+N
Sbjct: 629 VEYIGTLEQLYMEIA----------IDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYN 678
Query: 719 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 778
QSPRN YQ MGKQ MG N+ + Y L P PL +++ G N
Sbjct: 679 QSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTN 738
Query: 779 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 838
AIVA+ Y+GY+ ED++I+N+++ +RGF G++ K F D+ ++
Sbjct: 739 AIVAVISYTGYDMEDAMIINKAAYERGF--------------AYGSIYKTKFLTLDKKSS 784
Query: 839 MGMRHGSYDKL----DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSIS 894
RH +L D DGL PG+++S G D G+ + Y +
Sbjct: 785 YFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFD---GEVATYK----VVK 832
Query: 895 LRHSETGMVDQV--LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 952
+ E +V+ + L + + + V + +R R IGDKF+SR GQKG Y ED
Sbjct: 833 MDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAED 892
Query: 953 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF----TDVTVDN 1008
+P+T G+ PDI+ NPH PSRMTI +IE + GK AA G DATPF + +D
Sbjct: 893 LPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDY 952
Query: 1009 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1068
K L GY G E +Y+G GR +TA IF G +YQRL+HMV DK R G V+
Sbjct: 953 FGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEAR 1012
Query: 1069 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA---- 1124
T QP +GR R GG+RFGEMERD +I+HGA+ L++RLF SD VC CG I
Sbjct: 1013 THQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQ 1072
Query: 1125 -------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173
L CR C + + + + IP++ K L EL ++ I R E
Sbjct: 1073 RIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128
>sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB2 PE=3 SV=1
Length = 519
Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/540 (35%), Positives = 315/540 (58%), Gaps = 54/540 (10%)
Query: 25 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFA 84
++ AW ++ A+F++ LV + S+++F+ N +QEI+D S IE+ + +
Sbjct: 8 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL-----EQGKYRVETG 62
Query: 85 EIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFT 144
++ + KP + E+DG + ++P ARLRNLTYSA + +++ R++K+G G E +F
Sbjct: 63 KVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEG--GPET----EFE 114
Query: 145 KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 204
KV+IG++P+ML+S C L+ S K+L E GE P D GGYFI+NGSE+ ++ E+++ N +
Sbjct: 115 KVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEIAPNKI 174
Query: 205 Y---VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 261
+ ++ + A V +RS F +S K +G ++R + PY+
Sbjct: 175 ILERIGEEDENRARAIVTSIRSG-----------FRARISLEYRKPRKTGVFLRISFPYV 223
Query: 262 RTEIPIIIVFRALGFVADKDILEHICYDFQ-------DTQM----MELLRPSLEE----- 305
EIP++I+ RALG D++I+ I DF D Q+ + L + ++E
Sbjct: 224 PGEIPLVILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEED 283
Query: 306 --AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 363
++I++ A+ YIG R A G+T D RIK A++++ + +LPH+GT +KA Y
Sbjct: 284 RREYLIRS---AIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPEKRLEKATYL 339
Query: 364 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 423
+ LL G R D+DHY NKRL ++G L+ L R+ F L+RD+ +++ +
Sbjct: 340 AEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLAR 399
Query: 424 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
GK+ +++ A+++ +T LK+++ATGNW G RAGVSQ+L+R +Y TLSH+RR+
Sbjct: 400 GKEPSVKQAVRSDVLTENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHMRRVV 454
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 543
SP+ R + R LH +Q+G +CP ETPEG CGLVKNLAL+ I+ GS A + E ++
Sbjct: 455 SPLSRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISEGSDASEVEEVIK 514
>sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB2 PE=3 SV=1
Length = 515
Score = 333 bits (853), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 193/546 (35%), Positives = 316/546 (57%), Gaps = 53/546 (9%)
Query: 25 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS-DF 83
++ AW ++ A+F++ LV + S+++F+ N +QEI+D S IE+ GQ + +
Sbjct: 2 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL------EQGQYTVET 55
Query: 84 AEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 143
++ + KP + E+DG + ++P ARLRNLTYSA + +++ R++K+G G E +F
Sbjct: 56 GKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEG--GSET----EF 107
Query: 144 TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 203
KV IG++P+ML+S C L+ +L E GE P D GGYFI+N SE+ ++ E+++ N
Sbjct: 108 EKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVNASERSIVTMEEIAPNK 167
Query: 204 VY---VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 260
+ + ++ + A V +RS F +S K +G ++R + PY
Sbjct: 168 IILERIGEEDEKRARAIVTSIRSG-----------FRARISLEYRKPRKTGVFLRISFPY 216
Query: 261 IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM--ELLRPSLEEAFVIQNQ------ 312
+ E+P++I+ RALG D++I+ I DF + QM+ + ++ SL++ + ++
Sbjct: 217 VPGELPLVILLRALGLATDQEIITSISDDF-NYQMIAADDIQVSLDKLKLDSDKMEEEMD 275
Query: 313 ---------QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 363
+ A+ YIG R A G+T D RIK A++++ + +LPH+GT +KA Y
Sbjct: 276 EEERREYLIRSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPDKRLEKAVYL 334
Query: 364 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 423
+ LL G R D+DHY NKRL ++G L+ LFR+ F LTRD+ +++ +
Sbjct: 335 AEMTEMLLQVISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYRLERSLAR 394
Query: 424 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 483
GK+ +++ A+++ ++ LK+++ATGNW G RAGVSQ+L+R +Y TLSH+RR+
Sbjct: 395 GKEPSVKQAVRSDVLSENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHMRRVV 449
Query: 484 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 543
SP+ R + R LH +Q+G +CP ETPE CGLVKNLALM I+ GS I E ++
Sbjct: 450 SPLSRSQPHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGSDPDEIEEVIK 509
Query: 544 EWGTEN 549
+ G N
Sbjct: 510 KMGVIN 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,155,916
Number of Sequences: 539616
Number of extensions: 19465218
Number of successful extensions: 74534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 65192
Number of HSP's gapped (non-prelim): 5814
length of query: 1186
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1057
effective length of database: 121,958,995
effective search space: 128910657715
effective search space used: 128910657715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)