Query 001021
Match_columns 1186
No_of_seqs 229 out of 1855
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 8E-305 3E-309 2854.7 49.6 1149 23-1174 12-1209(1210)
2 1twf_B DNA-directed RNA polyme 100.0 7E-296 2E-300 2807.4 86.0 1149 21-1174 23-1221(1224)
3 4ayb_B DNA-directed RNA polyme 100.0 2E-268 8E-273 2571.7 84.5 1109 19-1177 4-1124(1131)
4 2a6h_C DNA-directed RNA polyme 100.0 3E-225 1E-229 2106.8 48.2 940 26-1175 3-1107(1119)
5 3lu0_C DNA-directed RNA polyme 100.0 8E-211 3E-215 1948.1 41.6 939 26-1170 12-1340(1342)
6 3mlq_A DNA-directed RNA polyme 100.0 1.1E-29 3.6E-34 264.4 12.4 123 40-206 2-134 (188)
7 3qqc_A DNA-directed RNA polyme 99.2 1.3E-11 4.3E-16 144.9 6.5 63 1111-1173 2-64 (436)
8 3tbi_B DNA-directed RNA polyme 99.1 4.6E-11 1.6E-15 125.8 6.9 98 810-912 2-108 (228)
9 3lti_A DNA-directed RNA polyme 98.8 4E-08 1.4E-12 108.4 13.5 71 199-286 4-77 (296)
10 3mlq_A DNA-directed RNA polyme 96.1 0.0028 9.6E-08 66.1 3.7 61 386-448 121-181 (188)
11 1gh9_A 8.3 kDa protein (gene M 70.9 1.4 4.9E-05 38.4 1.4 48 1112-1161 2-55 (71)
12 1yuz_A Nigerythrin; rubrythrin 62.9 3.7 0.00013 43.2 2.9 29 1110-1141 167-195 (202)
13 3pwf_A Rubrerythrin; non heme 43.8 13 0.00045 37.8 3.3 26 1113-1141 137-162 (170)
14 1lko_A Rubrerythrin all-iron(I 42.5 12 0.0004 38.9 2.7 30 1110-1141 151-180 (191)
15 1vq8_Z 50S ribosomal protein L 41.6 12 0.00042 33.6 2.2 28 1113-1140 26-53 (83)
16 1dl6_A Transcription factor II 31.8 27 0.00094 29.0 2.7 33 1108-1140 5-38 (58)
17 2kn9_A Rubredoxin; metalloprot 30.3 29 0.00098 31.0 2.7 29 1113-1141 26-69 (81)
18 1pft_A TFIIB, PFTFIIBN; N-term 30.2 25 0.00085 28.0 2.2 27 1114-1140 5-32 (50)
19 2v3b_B Rubredoxin 2, rubredoxi 30.0 26 0.00088 28.9 2.2 29 1113-1141 2-45 (55)
20 6rxn_A Rubredoxin; electron tr 27.3 27 0.00093 27.8 1.8 29 1113-1141 3-39 (46)
21 3cc2_Z 50S ribosomal protein L 25.7 29 0.00097 33.0 2.0 29 1112-1140 58-86 (116)
22 1yk4_A Rubredoxin, RD; electro 25.6 33 0.0011 28.0 2.1 28 1114-1141 2-44 (52)
23 1dx8_A Rubredoxin; electron tr 25.5 30 0.001 30.0 1.9 30 1112-1141 5-49 (70)
24 3jyw_9 60S ribosomal protein L 25.2 30 0.001 30.2 1.8 29 1112-1140 24-52 (72)
25 3j21_i 50S ribosomal protein L 24.8 30 0.001 31.0 1.8 29 1112-1140 33-61 (83)
26 4a17_Y RPL37A, 60S ribosomal p 24.1 32 0.0011 31.9 1.9 29 1112-1140 34-62 (103)
27 1s24_A Rubredoxin 2; electron 23.8 35 0.0012 30.8 2.1 30 1112-1141 33-77 (87)
28 3j21_g 50S ribosomal protein L 23.4 31 0.0011 28.0 1.5 25 1113-1141 13-37 (51)
29 1e8j_A Rubredoxin; iron-sulfur 23.2 41 0.0014 27.4 2.2 28 1114-1141 3-45 (52)
30 3iz5_m 60S ribosomal protein L 22.9 32 0.0011 31.4 1.7 29 1112-1140 34-62 (92)
31 3izc_m 60S ribosomal protein R 20.8 35 0.0012 31.1 1.5 29 1112-1140 34-62 (92)
32 1ffk_W Ribosomal protein L37AE 20.6 33 0.0011 30.0 1.2 30 1111-1140 24-53 (73)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-305 Score=2854.72 Aligned_cols=1149 Identities=65% Similarity=1.096 Sum_probs=1051.3
Q ss_pred cchhhhhhhhhcccCccchHHHHHHHHHHHHHhhHHHHHhhcCCeeeCCCCCC-------CCCeEEEEeeEEEeCCcccC
Q 001021 23 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH-------NPGQQSDFAEIYLSKPMMTE 95 (1186)
Q Consensus 23 ~~~~~~~~~i~~~f~~~~Lv~~hi~SFN~Fl~~gL~~ii~~~~pI~~~~~~~~-------~~~~~l~f~~i~i~~P~~~~ 95 (1186)
++.+|+|.++++||+.++|++|||||||+|+++||++|++++++|+++.+.++ ..++.|+|++++|++|++.+
T Consensus 12 ~~~ed~w~li~aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~~e 91 (1210)
T 3h0g_B 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTMTE 91 (1210)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCCBC
T ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCceec
Confidence 78899999999999999999999999999999999999999999988754321 13578999999999999998
Q ss_pred CCCccCCCChHHHHhcCCCcceeEEEEEEEEEeccCCC------C-c-ccccceeeEEEEecccceeeccCCccCCCCCh
Q 001021 96 SDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD------G-E-EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 167 (1186)
Q Consensus 96 ~~~~~~~l~P~EcR~r~lTYsa~l~v~v~~~~~~~~~~------~-~-~~~~~~~~~~v~lG~IPIMvkS~~C~L~~~s~ 167 (1186)
+++..++|||+|||+|++||+|||+|+|++.+++...+ . + ...+.....++.||+|||||||++|||+++|+
T Consensus 92 ~d~~~~~l~P~EcRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~s~ 171 (1210)
T 3h0g_B 92 ADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSD 171 (1210)
T ss_dssp TTSCBCCCCTTTTTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSCCH
T ss_pred CCCcccccCHHHHHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCCCH
Confidence 88888999999999999999999999999988653210 0 0 00011234579999999999999999999999
Q ss_pred hhhhhcCCCCCCCCceEEEcCeeeEEEeeeeeccCeEEEEEecCCCcceEEEEEEEeecCCCCCCceEEEEEEecCCCCC
Q 001021 168 KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 247 (1186)
Q Consensus 168 ~eli~~gE~~~D~GGYFIING~ERVIi~Qe~~s~N~~~~~~~~~~~~~~~~~~irs~~~~g~~~~~~~~v~~~~~~~~~~ 247 (1186)
+||++.||||+||||||||||+|||||+||++|+|+++++++++++++.|.|+|||+++++++..+.+.++++.+...
T Consensus 172 ~eL~~~gEcp~D~GGYFIING~EKVII~qerla~N~~iv~~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~-- 249 (1210)
T 3h0g_B 172 SELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE-- 249 (1210)
T ss_dssp HHHHHTTCCTTCCCCCBCGGGSCBCCCBCBCCCCSCCCCCCCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTT--
T ss_pred HHHHhcCCCCCCCCCEEEEeCEEEEEEechhhccceEEEEeecCCCCceEEEEEEEEecCCccceeEEEEEEEecccc--
Confidence 999999999999999999999999999999999999999888877888999999999998877666666666543210
Q ss_pred CCCCcEEEEEeccccccchHHHHHHHhcCCCHHHHHHHhccccCchhhHhhhHhhHhhhhccccHHHHHHHHhhcCcccC
Q 001021 248 GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVG 327 (1186)
Q Consensus 248 ~~~~~~i~v~i~~~~~~IPl~ilLkALG~~sD~eI~~~i~~~~~~~~~~~~l~~~l~e~~~i~t~~~al~yIg~r~~~~~ 327 (1186)
..++.+++++++++.+||+++||||||.+||+||++.|+++..++++.++|+.+++++..++|+++||+|||+||+...
T Consensus 250 -~~~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~~~i~tq~~aL~yIG~r~~~~~ 328 (1210)
T 3h0g_B 250 -NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTTG 328 (1210)
T ss_dssp -SCSCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTTSSCCSSHHHHHTTCCCSSSCC
T ss_pred -CCCceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhccccC
Confidence 0256899999999989999999999999999999999998878889999999999998888999999999999998666
Q ss_pred CCchhhHHHHHHHHhhcccCCCCCCCccchhHHHHHHHHHHHHHHhccCCcCCCCCcccccceeccCchhhHHHHHHHHH
Q 001021 328 VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 407 (1186)
Q Consensus 328 ~~~~~~~e~~~~iL~~~ll~Hl~~~~~~~~~K~~~L~~Mv~kLl~l~~g~~~~DD~D~l~NkRv~l~G~Ll~~lfr~~l~ 407 (1186)
.++++++++|+++|++++|||++....++.+||.||++|+|||++++.|.+.+||+|||+||||+++|+||+.+||+.|+
T Consensus 329 ~~~~~~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~~lfr~~~~ 408 (1210)
T 3h0g_B 329 VTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFR 408 (1210)
T ss_dssp CCHHHHHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHHHHHHHHHH
Confidence 67788899999999999999999988778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCccchhhhccccchhhhhhhhcccCcccccc-ccccccceeeeccccChhhhhccccccCCCC
Q 001021 408 KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN-AAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 486 (1186)
Q Consensus 408 ~~~k~ik~~l~k~~~~~~~~~~~~~i~~~~It~~i~~~~sTGNw~~~~-~~~~~sGvsq~l~r~N~l~~lSh~Rrv~~~~ 486 (1186)
++++++++++++.+++.+.+++..+++++.||++|+||||||||+..+ +.++++||||+|+|+||+|+|||||||++|+
T Consensus 409 ~~~~~i~~~l~k~~~~~~~~~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n~~s~lShlRrv~~p~ 488 (1210)
T 3h0g_B 409 KMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPI 488 (1210)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSSHHHHHHHTTBBCCSC
T ss_pred HHHHHHHHHHHHHhhcCCccCHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCCHHHHHHHHHhccCch
Confidence 999999999999888878889999999999999999999999999766 7789999999999999999999999999999
Q ss_pred CcCCCcCcccccCCCCccccccCCCCCCcccccccccceeEEEccCCCchhHHHHHHHhCCccccccCCCCCCCceEEEE
Q 001021 487 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFV 566 (1186)
Q Consensus 487 ~~~~K~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~Is~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~V~l 566 (1186)
++++|+++||+||||||||+||+|||||++||||||||++|+||++.+.+||.++|.++||++++++.+...++.++|||
T Consensus 489 ~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le~~~~~~~~~~tkVfv 568 (1210)
T 3h0g_B 489 GRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFV 568 (1210)
T ss_dssp CSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCSCCCSSSSSSSCCCCS
T ss_pred hhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchhhcCcccCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred CCEEEEEEcChHHHHHHHHhhhhcCCCCCceEEEEeccCCeEEEEeCCCceeeeEEEEecc-------cchhhHHHHHHH
Q 001021 567 NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIAL 639 (1186)
Q Consensus 567 nG~~iG~~~~~~~l~~~lr~~rr~~~i~~~vsi~~~~~~~~i~I~td~gRl~RPl~~v~~~-------~~~~~~~~~~~l 639 (1186)
||+|||+|.+|..|++.||.|||+|.|+.+|||+++...+|++||||+||+|||||+|+|+ ++.++++|+++|
T Consensus 569 NG~wVGvh~dp~~Lv~~lR~lRR~g~Is~eVSIvrdir~rE~~IfTDaGRv~RPLfvVen~~~~~~~g~L~l~k~hi~~L 648 (1210)
T 3h0g_B 569 NGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQL 648 (1210)
T ss_dssp TTCCCCCCSCHHHHHHHHHHHHTTTSSCTTCCCCCCTTTCCCCCCCSSCCBCCEEEECCCSSCSSSSCCCSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcCCCCCceEEEecCCCCeEEEecCCCcccceEEEEccCCcccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 899999999999
Q ss_pred hcCCC------CCCCCccccccCCcEEEeccccccceeeeecccccccccCC-----------C----Cc---cccccce
Q 001021 640 QQRES------PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----------P----EE---AYADTYT 695 (1186)
Q Consensus 640 ~~~~~------~~~~~~~~l~~~g~iE~i~~~Ee~~~~Ia~~~~~~~~~~~~-----------~----k~---~~~~~~t 695 (1186)
.++.. ....+|++|+++|+||||||+||++++|||+++|+...+.. + +. .....||
T Consensus 649 ~~~~~~~~~~~~~~~~w~~Lv~~GvIEylDaeEEet~mIamtpeDL~~~r~~~~g~~~~~~~d~~~r~k~~~~~~~~~~T 728 (1210)
T 3h0g_B 649 IEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWT 728 (1210)
T ss_dssp HHHHTCCCSCTTCCCSSTTTTTTTSEEECCTTTGGGCCEESCHHHHHHHHHHTTCCCCCCSSCCSSCCCCCSCCSCCSCS
T ss_pred hcccccccccccccCCHHHHHhCCCEEEecHhhhhceeEEecHHHhhhhhhhhccccccccccchhhccccCCCcccccc
Confidence 74311 01258999999999999999999999999999999652100 0 00 0135799
Q ss_pred eeecCCCccccccccccCCCCCCCCccchhhhhcccccccccccceEEeecccceeeccCCcceeecccccccccccCCC
Q 001021 696 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 775 (1186)
Q Consensus 696 h~Ei~p~~ilsv~AslIPF~~HNqSpRn~yqc~M~KQaig~~~~n~~~r~D~~~~~L~ypQ~PlV~t~~~~~~~~~~~p~ 775 (1186)
||||||++|||||||+||||||||||||||||||+|||||++++|++.|+||++|+|+|||+|||+|+++++++++++|+
T Consensus 729 HcEIhPsmILGIcASiIPFpdHNQSPRNtYQ~aMgKQamG~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~~~~~elp~ 808 (1210)
T 3h0g_B 729 HCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPA 808 (1210)
T ss_dssp EECSCGGGSSCSSSTTSSSSTTSCSHHHHHHHHHHTTCCSCCCTTTTTSCCSSEEEESSCBCCSSBCTTSTTTTCTTSCS
T ss_pred cccccchhhhhheeecccCccccccchhhhhhhhhcccccccccccccccCccccEeecCcCccccchhHHHhCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCCcEEeeccccccCceEEEEEEEEEeeecccCCcceeeecCCCCCCCCCCCCCCcCCCCCCCcc
Q 001021 776 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 855 (1186)
Q Consensus 776 G~N~~VAv~sy~GYn~EDaiiink~sv~rG~~~s~~~~~~~~~~~~~~~~~~e~~~~p~~~~~~~~~~~~~~~ld~dGi~ 855 (1186)
|+||+||||||+||||||||||||+|+|||||||+||++|++++++.+.+..+.|++|+.+...+++...|++||+||||
T Consensus 809 G~NaiVAvmsy~GYn~EDAiIink~sv~rg~~~s~~~~~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~LD~dGi~ 888 (1210)
T 3h0g_B 809 GQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLI 888 (1210)
T ss_dssp CCEECBEECCCSSSSCSSCEEEEHHHHTTTTTCEEEEEEEEECCCCCSSSCCCCCCCCCTTSCCSCCSCCGGGCCTTSSC
T ss_pred ccceEEEEeccCCCChhhheeeehhheecCceEEEEEEEEEEEeeecCCCceeEEcCCCcchhcccchhhHhhcCCCCCc
Confidence 99999999999999999999999999999999999999999999887766788999998776666777789999999999
Q ss_pred CCCcEEcCCCEEEEEeCCCCcc--ccccccCccccceeeEEeecCCCcEEEEEEEEecCCCceEEEEEEEeecCCCCccc
Q 001021 856 PPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 933 (1186)
Q Consensus 856 ~~g~~v~~gd~l~~k~~p~~~~--~~~~~~~~~~~~~~s~~~~~~~~g~v~~v~~~~~~~~~~~vkv~~r~~R~p~iGDK 933 (1186)
.||++|++|||||||++|+..+ +++...+....+|+|++++++|.|+||+|.++++.+|.+.|||++|+.|+|++|||
T Consensus 889 ~~G~~v~~gDiligK~~p~~~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkv~~~~~R~~~~GDK 968 (1210)
T 3h0g_B 889 APGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDK 968 (1210)
T ss_dssp CTTCCCCTTCCCCCCCCCC-----------CCCCCCCCCCCCCTTCCCCCCEEEEEECSSSSEEEEEEECCCBCCCTTCE
T ss_pred CCCCEecCCCEEEEEecCCCCCchhhcccccccccceeeEEecCCCCeEEEEEEEEEecCCCeEEEEEEEEecCCCchhh
Confidence 9999999999999999998742 23333345568999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccEEEeeecCCCCCCCCCCCCCcEEeCCCCCCCCCchhhHHhhhhhHhhhhcCCccccCCCCCccHHHHHHHH
Q 001021 934 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1013 (1186)
Q Consensus 934 fssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tpF~~~~~~~~~~~l 1013 (1186)
||||||||||||+|||+|||||+++|++|||||||||||||||||||+|+++||||++.|.+.|+|||++.+++++++.|
T Consensus 969 ~a~RhGqKGvi~~i~~~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~~~~g~~~~~tpF~~~~~~~~~~~l 1048 (1210)
T 3h0g_B 969 FASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLL 1048 (1210)
T ss_dssp EECTTCCCEEEEEEECTTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHSSSSCCCCBCCSSCSCCHHHHHHHH
T ss_pred hhcccCCCceeeEEeccccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHHHhcCCceeeccCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCeEEEeeCCCCceEEeeEeEeeeehhccccccCCceEEeccCCccccccCCCCcccCCCcceeeehhhhHHH
Q 001021 1014 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1093 (1186)
Q Consensus 1014 ~~~g~~~~G~e~ly~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~Gr~~~GG~R~GEMErd~l~ 1093 (1186)
+++||+++|+|+||||+||++|+++||+|++|||||+|||+||+||||+|||+.|||||++||+|+|||||||||||||+
T Consensus 1049 ~~~g~~~~G~~~l~~g~tg~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~gp~~~~t~QP~~gr~~~GG~r~GEME~~~l~ 1128 (1210)
T 3h0g_B 1049 RSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQI 1128 (1210)
T ss_dssp HTTTSCTTSCBCCBCSSSCCBCSSCBEECCEECEECSCCSTTTCEECSSCCBCSSSCSBCCSSTTCCCCCCCHHHHHHHH
T ss_pred HHcCcCCCCCEEEEcCCCCCCccccEEEEehHhhcchhhcccCcEEeccCCCchhccCCcccccccCCeeeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHhhhcCCCcceeeeccccCcceeeccccCceeeccCCCCCCceeecccHhhHHHHHHHHhCCCceEEEecc
Q 001021 1094 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173 (1186)
Q Consensus 1094 a~Gas~~L~erL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPy~~k~l~~EL~sm~i~~~l~~~~ 1173 (1186)
|||||++|+|||+.+||++.++||+.||++++.+...+.++|+.|.++.+|.++.||||||||+|||+||||++||.+++
T Consensus 1129 a~Gaa~~l~e~l~~~SD~~~~~vC~~cg~~~~~~~~~~~~~c~~c~~~~~i~~~~~p~~~k~l~~El~~~~i~~rl~~~~ 1208 (1210)
T 3h0g_B 1129 SHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRLFTKN 1208 (1210)
T ss_dssp HHTBHHHHHHHHHTTTTCCEEEEESSSCCBCCCCSSSCCCCCTTTCCSSCEEEEECCHHHHHHHHHHHTTTCCEECCCST
T ss_pred hccHHHHHHHHhhcCCCcceeEeecCCCCeeeecccCCceEcCccCCCCccceecCCHHHHHHHHHHHhCCCceEEEecC
Confidence 99999999999999999999999999999998777777899999999999999999999999999999999999999865
Q ss_pred C
Q 001021 1174 D 1174 (1186)
Q Consensus 1174 ~ 1174 (1186)
+
T Consensus 1209 ~ 1209 (1210)
T 3h0g_B 1209 H 1209 (1210)
T ss_dssp T
T ss_pred C
Confidence 4
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=6.8e-296 Score=2807.41 Aligned_cols=1149 Identities=63% Similarity=1.066 Sum_probs=1004.2
Q ss_pred cccchhhhhhhhhcccCccchHHHHHHHHHHHHHhhHHHHHhhcCCeeeCCCCCCC-------CCeEEEEeeEEEeCCcc
Q 001021 21 EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN-------PGQQSDFAEIYLSKPMM 93 (1186)
Q Consensus 21 ~~~~~~~~~~~i~~~f~~~~Lv~~hi~SFN~Fl~~gL~~ii~~~~pI~~~~~~~~~-------~~~~l~f~~i~i~~P~~ 93 (1186)
++++.+|+|.++++||+.++|++|||+|||+|+++||++++++++||+++.+++++ .++.|+|++++|++|++
T Consensus 23 ~~~~~~d~w~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~ 102 (1224)
T 1twf_B 23 APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMV 102 (1224)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEE
T ss_pred CccCHHHHHHhHHHHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCce
Confidence 45789999999999999999999999999999999999999999999864322111 14789999999999999
Q ss_pred cCCCCccCCCChHHHHhcCCCcceeEEEEEEEEEeccCCC-Cc-c----cccc--ee--eEEEEecccceeeccCCccCC
Q 001021 94 TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD-GE-E----VTET--QD--FTKVFIGKVPIMLRSSYCTLY 163 (1186)
Q Consensus 94 ~~~~~~~~~l~P~EcR~r~lTYsa~l~v~v~~~~~~~~~~-~~-~----~~~~--~~--~~~v~lG~IPIMvkS~~C~L~ 163 (1186)
.+.++..++|||+|||+|++||+|||+|+|.+.+...... ++ . .+.+ .+ .++|++|+|||||||++|||+
T Consensus 103 ~e~~~~~~~l~P~EcRlR~lTYsapl~v~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~ 182 (1224)
T 1twf_B 103 NESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLS 182 (1224)
T ss_dssp CCSSSCCEECCHHHHHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGG
T ss_pred eccCCccccCCHHHHhhcCCccceeEEEEEEEEEEeCCcccccccccccccccccccccceeeEeCCCCeEeccCcccCC
Confidence 8888788899999999999999999999995443211110 00 0 0001 22 446999999999999999999
Q ss_pred CCChhhhhhcCCCCCCCCceEEEcCeeeEEEeeeeeccCeEEEEEecCCCcceEEEEEEEeecCCCCCCceEEEEEEecC
Q 001021 164 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 243 (1186)
Q Consensus 164 ~~s~~eli~~gE~~~D~GGYFIING~ERVIi~Qe~~s~N~~~~~~~~~~~~~~~~~~irs~~~~g~~~~~~~~v~~~~~~ 243 (1186)
|++++||+++||||+|+||||||||+|||||+||++|||+++++++++++++.|.+++||+.++++...+.+.+++..+.
T Consensus 183 ~~s~~el~~~gEcp~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~ 262 (1224)
T 1twf_B 183 EATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRE 262 (1224)
T ss_dssp TCCHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCS
T ss_pred CCCHHHHHhhccCccCCCCEEEEeCcEEEEEEeeeccCCeEEEEeccCCCcceEEEEEEEEeccCCcceeEEEEEEeccc
Confidence 99999999999999999999999999999999999999999998877777888999999998877555566777765421
Q ss_pred CCCCCCCCcEEEEEeccccccchHHHHHHHhcCCCHHHHHHHhccccCchhhHhhhHhhHhhhhccccHHHHHHHHhhc-
Q 001021 244 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR- 322 (1186)
Q Consensus 244 ~~~~~~~~~~i~v~i~~~~~~IPl~ilLkALG~~sD~eI~~~i~~~~~~~~~~~~l~~~l~e~~~i~t~~~al~yIg~r- 322 (1186)
+. .++.+++++++++++||+++||||||++||+||++.|+++..++.+.+++..+++++..+.|+++||+|||++
T Consensus 263 ~~----~~~~i~vr~~~~k~~IPi~illkALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~e~~~~~t~~~AL~yIg~r~ 338 (1224)
T 1twf_B 263 GS----SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRG 338 (1224)
T ss_dssp SC----SSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTTTCCSHHHHHHHHHHTT
T ss_pred cC----CCCEEEEEEecccccccHHHHHHHhcCCCHHHHHHHhcccCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Confidence 10 0468999999988899999999999999999999999887677889999999999877778999999999999
Q ss_pred CcccCCCchhhHHHHHHHHhhcccCCCCCCCccchhHHHHHHHHHHHHHHhccCCcCCCCCcccccceeccCchhhHHHH
Q 001021 323 GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 402 (1186)
Q Consensus 323 ~~~~~~~~~~~~e~~~~iL~~~ll~Hl~~~~~~~~~K~~~L~~Mv~kLl~l~~g~~~~DD~D~l~NkRv~l~G~Ll~~lf 402 (1186)
++. +.++..+++.|+++|++++|||+|....+...|++||++|++||+.+..|.+.+||+|||+||||+++|+||+.||
T Consensus 339 ~~~-g~~~~~~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~Ll~~lf 417 (1224)
T 1twf_B 339 TAL-GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF 417 (1224)
T ss_dssp SCT-TSCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHH
T ss_pred ccC-CCCCccHHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHHHHHHH
Confidence 543 4457788999999999999999998765557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCccchhhhccccchhhhhhhhcccCcccccc-ccccccceeeeccccChhhhhccccc
Q 001021 403 RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN-AAGTRAGVSQVLNRLTYASTLSHLRR 481 (1186)
Q Consensus 403 r~~l~~~~k~ik~~l~k~~~~~~~~~~~~~i~~~~It~~i~~~~sTGNw~~~~-~~~~~sGvsq~l~r~N~l~~lSh~Rr 481 (1186)
|+.|+++++++++++++.+++.+.+++..+++++.||++|++|||||||+.++ +.++++||||+|+|+||+|+||||||
T Consensus 418 r~~~~r~~~~i~~~l~~~~~~~~~~~~~~~i~~~~It~~lk~~~aTGNw~~~k~~~~~~sGvSQvldr~n~ls~LSH~RR 497 (1224)
T 1twf_B 418 KTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 497 (1224)
T ss_dssp HHHHHHHHHHHHHHHHSCCC--------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhhcccchhhcchhheeeccccccccccccccceeEeecccchhhhhhhhhc
Confidence 99999999999999998877777889999999999999999999999999887 77899999999999999999999999
Q ss_pred cCCCCCcCCCcCcccccCCCCccccccCCCCCCcccccccccceeEEEccCCCchhHHHHHHHhCCccccccCCCCCCCc
Q 001021 482 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 561 (1186)
Q Consensus 482 v~~~~~~~~K~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~Is~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~ 561 (1186)
+|+|+++++|+++||+||||||||+||+|||||++||||||||+||+|+++.+.+||.++|.++||.+++++++..+++.
T Consensus 498 i~~~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~pi~~~l~~~G~~~l~e~~~~~~~~~ 577 (1224)
T 1twf_B 498 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDA 577 (1224)
T ss_dssp EECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGGCCGGGCTTC
T ss_pred ccccccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHHHHHHHHHHcCCcceeecccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777889
Q ss_pred eEEEECCEEEEEEcChHHHHHHHHhhhhcCCCCCceEEEEeccCCeEEEEeCCCceeeeEEEEecc------cchhhHHH
Q 001021 562 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------RLLIKKRD 635 (1186)
Q Consensus 562 ~~V~lnG~~iG~~~~~~~l~~~lr~~rr~~~i~~~vsi~~~~~~~~i~I~td~gRl~RPl~~v~~~------~~~~~~~~ 635 (1186)
++|||||+|+|++.+|..|++.||.|||.|.|+.+|||+++...++++||||+||+|||||+|+++ ++.++++|
T Consensus 578 ~kVfvnG~~vG~~~~p~~lv~~lr~lRR~g~i~~evsiv~d~r~~ei~I~TD~GRv~RPl~vV~~~~~~~~~~l~l~k~h 657 (1224)
T 1twf_B 578 TRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGH 657 (1224)
T ss_dssp EEEEETTEEEEEESCHHHHHHHHHHHHHHTSSCTTCEEEEETTTTEEEEECCSCCEEEEEEEEECCCTTSSCEESCCHHH
T ss_pred eEEEECCEEEEEeCCHHHHHHHHHHHHhccCCCCeEEEEEecccCeEEEeccCceeeeeEEEecCCCccccccceecHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHhcCC-------CC--CCCCccccccCCcEEEeccccccceeeeecccccccccCC--------C----C-cccccc
Q 001021 636 IIALQQRE-------SP--EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--------P----E-EAYADT 693 (1186)
Q Consensus 636 ~~~l~~~~-------~~--~~~~~~~l~~~g~iE~i~~~Ee~~~~Ia~~~~~~~~~~~~--------~----k-~~~~~~ 693 (1186)
+++|..+. .. ...+|++|+++|+||||||+||++++||++++++.+.+.. . + ......
T Consensus 658 i~~L~~~~~~~~~~~~~~~~~~~w~~Lv~~G~iEyldaeEEe~~~Ia~~~~dl~~~~~~~~~~~~~~~~~R~~~~~~~~~ 737 (1224)
T 1twf_B 658 IAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATT 737 (1224)
T ss_dssp HHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGGCC---------CCCTTSCCCCCCCCSC
T ss_pred HHHhhhccccccccccccccccchhHhccCCcEEEcChhhhcCcEEeccccccCcccccccccccccccccccCCcCchh
Confidence 99996431 00 0248999999999999999999999999999999763210 0 0 001236
Q ss_pred ceeeecCCCccccccccccCCCCCCCCccchhhhhcccccccccccceEEeecccceeeccCCcceeecccccccccccC
Q 001021 694 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 773 (1186)
Q Consensus 694 ~th~Ei~p~~ilsv~AslIPF~~HNqSpRn~yqc~M~KQaig~~~~n~~~r~D~~~~~L~ypQ~PlV~t~~~~~~~~~~~ 773 (1186)
+|||||||++|||||||+||||||||||||||||||||||||++.+|+..|+|++.|+|+|||+|||+|+.++.++++|+
T Consensus 738 ~Th~EI~Ps~ILgV~ASlIPF~dHNqSpRn~yqs~M~kQA~g~~~~n~~~r~dt~~~~l~ypQkPlV~t~~~~~~~~~el 817 (1224)
T 1twf_B 738 FTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFREL 817 (1224)
T ss_dssp CCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHHTTTTS
T ss_pred hcccccCCccccceeecccCCccccccchhhhcccccccccccccceeeeecccccceeecCcCCeEEcccccccccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEecCCCCCCCcEEeeccccccCceEEEEEEEEEeeecccCCcceeeecCCCCCCCCCCCCCCcCCCCCCC
Q 001021 774 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 853 (1186)
Q Consensus 774 p~G~N~~VAv~sy~GYn~EDaiiink~sv~rG~~~s~~~~~~~~~~~~~~~~~~e~~~~p~~~~~~~~~~~~~~~ld~dG 853 (1186)
|+|+||+||||||+||||||||||||+|+|||+|||+||++|++++++.+.+..|.|++|+.+...+++...|++||+||
T Consensus 818 p~G~N~iVAvm~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y~~~~~~~~~~~~e~~~~P~~~~~~~~~~~~~~~LD~dG 897 (1224)
T 1twf_B 818 PAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDG 897 (1224)
T ss_dssp CCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGGCCTTS
T ss_pred CCCeeEEEEEecccCcccchhhhhhhhHHhcCCeeEEEEEEEEEEeeeCCCCceeEecCCChhhccCccHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999988765456678999987556666777899999999
Q ss_pred ccCCCcEEcCCCEEEEEeCCCCcc--ccccccCccccceeeEEeecCCCcEEEEEEEEecCCCceEEEEEEEeecCCCCc
Q 001021 854 LAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 931 (1186)
Q Consensus 854 i~~~g~~v~~gd~l~~k~~p~~~~--~~~~~~~~~~~~~~s~~~~~~~~g~v~~v~~~~~~~~~~~vkv~~r~~R~p~iG 931 (1186)
||+||++|++|||||||++|+..+ +....++....+|+|++++++|.|+||+|.++++.+|.+.|||++|+.|+|+||
T Consensus 898 iv~~G~~V~~gDilvgK~~p~~~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkV~ir~~R~p~iG 977 (1224)
T 1twf_B 898 LIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIG 977 (1224)
T ss_dssp BCCTTCEECTTCEEECEECCCC-------------CCBBCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEECCCTT
T ss_pred ccCCccEecCCCEEEEEecCCCccccccccccccCccceeEEEeeCCCCeEEEEEEEEecCCCCEEEEEEEEecCCCCch
Confidence 999999999999999999998742 223334456789999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEeeecCCCCCCCCCCCCCcEEeCCCCCCCCCchhhHHhhhhhHhhhhcCCccccCCCCCccHHHHHH
Q 001021 932 DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1011 (1186)
Q Consensus 932 DKfssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tpF~~~~~~~~~~ 1011 (1186)
||||||||||||||+|||+||||||++|++|||||||||||||||||||+|+++||||++.|.+.|+|||++.+++++++
T Consensus 978 DKfasRHGqKGvis~i~p~eDMPf~~dG~~pDiIiNPhg~PSRMtiGqllE~~lgka~~~~G~~~datpF~~~~~~~i~~ 1057 (1224)
T 1twf_B 978 DKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISK 1057 (1224)
T ss_dssp CEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSCCHHHHHH
T ss_pred hhhhhhccCcceeeeecccccCCcCCCCCCccEEeCCCcCccccccchhHHHHhhHHHHhcCceeecCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCeEEEeeCCCCceEEeeEeEeeeehhccccccCCceEEeccCCccccccCCCCcccCCCcceeeehhhhH
Q 001021 1012 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1091 (1186)
Q Consensus 1012 ~l~~~g~~~~G~e~ly~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~Gr~~~GG~R~GEMErd~ 1091 (1186)
.|+++||+++|+|+||||+||++|+++||+||+|||||+|||+|||||||||||+.|||||++||+|+||||||||||||
T Consensus 1058 ~L~~~g~~~~G~e~ly~G~TG~~~~~~i~vG~~YyqkL~HmV~DKihaRs~GP~~~lT~QP~~Gr~r~GG~RfGEMErd~ 1137 (1224)
T 1twf_B 1058 LLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1137 (1224)
T ss_dssp HHHTTTSCTTSEECEECTTTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCCCCHHHHHH
T ss_pred HHHHcCCCCCCCEEeecCCCCCCccceEEEehhHhhcchhhcccCceEEeeCCCcccccCCCcccccCCceecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccHHHHHHhhhcCCCcceeeeccccCcc-eeeccccCceeeccCCCCCCceeecccHhhHHHHHHHHhCCCceEEE
Q 001021 1092 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1170 (1186)
Q Consensus 1092 l~a~Gas~~L~erL~~~SD~~~~~vC~~cG~~-~~~~~~~~~~~C~~C~~~~~i~~v~iPy~~k~l~~EL~sm~i~~~l~ 1170 (1186)
|+|||||++|||||+.+||.+.++||+.||++ ++.+..++.++|+.|+++.++.++.||||||||+|||+||||++||.
T Consensus 1138 L~a~Gaa~~L~ErL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~~c~~c~~~~~i~~~~iPysfklL~~EL~sm~i~~~l~ 1217 (1224)
T 1twf_B 1138 MIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLY 1217 (1224)
T ss_dssp HHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCCEEETTTTEEEBTTTTBSSSEEEEECCHHHHHHHHHHHHTTBCCEEE
T ss_pred HHhccHHHHHHHHHhcCCccceeEeeccCCCeeeecccccCceECCcCCCCCccccccCCHhHHHHHHHHHHCCCeeEEE
Confidence 99999999999999999999999999999999 77777778899999998889999999999999999999999999999
Q ss_pred eccC
Q 001021 1171 TKED 1174 (1186)
Q Consensus 1171 ~~~~ 1174 (1186)
+++.
T Consensus 1218 ~~~~ 1221 (1224)
T 1twf_B 1218 TDRS 1221 (1224)
T ss_dssp SCSS
T ss_pred eccc
Confidence 8753
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=2.2e-268 Score=2571.69 Aligned_cols=1109 Identities=44% Similarity=0.734 Sum_probs=1013.0
Q ss_pred cccccchhhhhhhhhcccCccchHHHHHHHHHHHHHhhHHHHHhhcCCeeeCCCCCCCCCeEEEEeeEEEeCCcccCCCC
Q 001021 19 EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDG 98 (1186)
Q Consensus 19 ~~~~~~~~~~~~~i~~~f~~~~Lv~~hi~SFN~Fl~~gL~~ii~~~~pI~~~~~~~~~~~~~l~f~~i~i~~P~~~~~~~ 98 (1186)
.+..++.+|+|.+|++||+.++||+|||||||||+++||++++++++||+... +++.|+|++++|++|++.+.++
T Consensus 4 ~~~~~~~~d~w~~i~~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~~-----~~~~l~f~~~~l~~P~~~e~d~ 78 (1131)
T 4ayb_B 4 LSSNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-----PGLKVRLGKIRIGKPRVRESDR 78 (1131)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCSS-----TTCEEEEEEEEECCSEEEETTT
T ss_pred ccccCChhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeecC-----CCEEEEEEEEEEeCCeeecCCC
Confidence 45788999999999999999999999999999999999999999999997542 4689999999999999988888
Q ss_pred ccCCCChHHHHhcCCCcceeEEEEEEEEEeccCCCCcccccceeeEEEEecccceeeccCCccCCCCChhhhhhcCCCCC
Q 001021 99 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 178 (1186)
Q Consensus 99 ~~~~l~P~EcR~r~lTYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C~L~~~s~~eli~~gE~~~ 178 (1186)
..+++||+|||+|++||+|||+|++.+..++. +.+.++|++|+|||||+|++|||++++++||++.||||+
T Consensus 79 ~~~~l~P~EcR~r~~TYsapl~v~v~~~~~~~---------~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~ 149 (1131)
T 4ayb_B 79 GEREISPMEARLRNLTYAAPLWLTMIPVENNI---------EAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPK 149 (1131)
T ss_dssp EEEECCHHHHHHHTCCCEEEEEEEEEEEETTE---------ECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTT
T ss_pred CcCccCHHHHHhcCCCccceEEEEEEEEECCc---------EEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcC
Confidence 88899999999999999999999998876543 235678999999999999999999999999999999999
Q ss_pred CCCceEEEcCeeeEEEeeeeeccCeEEEEEecCCCcceEEEEEEEeecCCCCCCceEEEEEEecCCCCCCCCCcEEEEEe
Q 001021 179 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 258 (1186)
Q Consensus 179 D~GGYFIING~ERVIi~Qe~~s~N~~~~~~~~~~~~~~~~~~irs~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~i~v~i 258 (1186)
||||||||||+|||||+|+++|||++|+.+.+..++..|.|.++| .++.|. ..+.+++.. ++.+++++
T Consensus 150 D~GGyFIING~ERVIv~Q~~~spn~~~~~~~~~~~~~~~~a~ii~--~~~~~~-~~~~i~~~~---------~~~~~v~~ 217 (1131)
T 4ayb_B 150 DPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIIS--STAGYR-VPVTIERLK---------DGTFHVSF 217 (1131)
T ss_dssp CCCCCEEETTEEEEECEEEEECCSSCEEEECCTTCSEEEEEECEE--ECSSCE-EECCEEEET---------TTCCEECC
T ss_pred CCCcEEEeCCEEEEEEEeeccCCCeEEEEeccCCCcEEEEEEEEE--CCCCce-eeEEEEEeC---------CCEEEEEE
Confidence 999999999999999999999999999977665556678888755 556662 122333321 56899999
Q ss_pred ccccccchHHHHHHHhcCCCHHHHHHHhccccCchhhHhhhHhhHhhhhccccHHHHHHHHhhcCcccCCCchhhHHHHH
Q 001021 259 PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 338 (1186)
Q Consensus 259 ~~~~~~IPl~ilLkALG~~sD~eI~~~i~~~~~~~~~~~~l~~~l~e~~~i~t~~~al~yIg~r~~~~~~~~~~~~e~~~ 338 (1186)
++.+++||+++||||||+.||+||++.+.. +.++.+.+..+++++..+.|+++||.||+++++. ........+.|+
T Consensus 218 ~~~~~~iPi~illrALG~~sD~eI~~~i~~---~~~~~~~l~~~~~~~~~i~~~~~al~~i~~r~~~-~~~~~~~~~~a~ 293 (1131)
T 4ayb_B 218 PAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANVDDALDFIGSRVAI-GQKRENRIEKAQ 293 (1131)
T ss_dssp SSSCCCEEHHHHHHHHTCCSHHHHHHHHCS---CHHHHTTTHHHHHHHTTTCCSSHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred cCcCceeeHHHHHHHhCCcchhhHHHHhcc---cHHHHHHHHHHHHHhcccccHHHHHHHHhhhhhc-CCCCchhHHHHH
Confidence 998889999999999999999999999964 4556667777788888889999999999999754 445566788999
Q ss_pred HHHhhcccCCCCCCCccchhHHHHHHHHHHHHHHhccCCcCCCCCcccccceeccCchhhHHHHHHHHHHHHHHHHHHHh
Q 001021 339 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 418 (1186)
Q Consensus 339 ~iL~~~ll~Hl~~~~~~~~~K~~~L~~Mv~kLl~l~~g~~~~DD~D~l~NkRv~l~G~Ll~~lfr~~l~~~~k~ik~~l~ 418 (1186)
++|++++|||++....++..|+.+|++|+++|+.+..|.+.+||+|||+||||+++|+||+++||.+|+++++.+++++.
T Consensus 294 ~il~~~~l~hl~~~~~~~~~K~~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~~ 373 (1131)
T 4ayb_B 294 QIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLE 373 (1131)
T ss_dssp HHHHTTSSTTSCSSTTSHHHHHHHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccchhhhccccchhhhhhhhcccCccccccccccccceeeeccccChhhhhccccccCCCCCcCCCcCccccc
Q 001021 419 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 498 (1186)
Q Consensus 419 k~~~~~~~~~~~~~i~~~~It~~i~~~~sTGNw~~~~~~~~~sGvsq~l~r~N~l~~lSh~Rrv~~~~~~~~K~t~vR~L 498 (1186)
+...+.+.+++..+++++.||++|++|||||||.. +++||||+|||+||+|+|||+||+|+++++++|.++||+|
T Consensus 374 ~~~~~~~~~~~~~li~~~~it~~i~~~~aTGn~~~-----~~sglSQ~mdq~NpLs~lsH~RRlsagl~rera~~evRdl 448 (1131)
T 4ayb_B 374 KSKVRGRKLALKALVRPDIVTERIRHALATGNWVG-----GRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDL 448 (1131)
T ss_dssp HHSTTCSCCCHHHHCCTHHHHHHHHHHHHTTBCSS-----SCBCCEEECCCSSHHHHHHHHTEEEECSCSSSCCHHHHSC
T ss_pred cchhcccccchhhhcCCchhhhhhHHHHhhccccc-----CCCceEEEeccCCHHHHHHhhhhhcCCccccccccccccc
Confidence 87666677889999999999999999999999974 6899999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCcccccccccceeEEEccCCCchhHHHHHHHhCCcccccc----CC-----CCCCCceEEEECCE
Q 001021 499 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI----SP-----AVIPQATKIFVNGC 569 (1186)
Q Consensus 499 hps~wG~iCPveTPEG~~cGLvk~LA~~a~Is~~~~~~~i~~~l~~~g~~~~~~~----~~-----~~~~~~~~V~lnG~ 569 (1186)
||||||||||+|||||+|||||||||++|+|+.+.++.++.+++.++|+.++++. .. .......+||+||+
T Consensus 449 HpShyGriCPIETPEG~niGLI~sLA~~a~I~~g~~e~~i~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~v~lng~ 528 (1131)
T 4ayb_B 449 HGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGR 528 (1131)
T ss_dssp CGGGTTTBCSSCCCSSTTBTTEEEBBSSCEECCCCCHHHHHHHHHHTTCEEHHHHHHTTTTC-----CCCCCCEEEETTE
T ss_pred CHhhccccccccCCCCccccccccceeeEEEecCCCCcceeeehhhcCceeeeeeehhhcccccccchhhhhcceeecCc
Confidence 9999999999999999999999999999999999999999999999999876532 11 11234568999999
Q ss_pred EEEEEcChHHHHHHHHhhhhcCCCCCceEEEEec--cCCeEEEEeCCCceeeeEEEEecccchhhHHHHHHHhcCCCCCC
Q 001021 570 WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI--RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 647 (1186)
Q Consensus 570 ~iG~~~~~~~l~~~lr~~rr~~~i~~~vsi~~~~--~~~~i~I~td~gRl~RPl~~v~~~~~~~~~~~~~~l~~~~~~~~ 647 (1186)
|+|++.++..++..+|.+|+.+.++.++||.+.. ..++++|++|+||++|||++++++.+.+..++++.+..+..
T Consensus 529 ~vg~~~~~~~~~~~~~~~~~~~~i~~~vsi~~~~~~~~~~~~i~~d~~r~~rpv~~~~~~~p~v~~~~~~~~~~g~~--- 605 (1131)
T 4ayb_B 529 LVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSI--- 605 (1131)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTSSCTTCEEEEECTTTCCEEEEECCTTCEEEEEEEBSSSSBSCCHHHHHHHHTTTC---
T ss_pred eEEEeccchhhhhhhhhhhccCccCceEEEeeccccccceeeeecCCcccccceEEeecccccccHHHHHHHhcCCh---
Confidence 9999999999999999999999999999998764 34899999999999999999999999999999999887765
Q ss_pred CCccccccCCcEEEeccccccceeeeecccccccccCCCCccccccceeeecCCCccccccccccCCCCCCCCccchhhh
Q 001021 648 GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 727 (1186)
Q Consensus 648 ~~~~~l~~~g~iE~i~~~Ee~~~~Ia~~~~~~~~~~~~~k~~~~~~~th~Ei~p~~ilsv~AslIPF~~HNqSpRn~yqc 727 (1186)
.|.++++.|.|||+|++|+++++||+.+.++.. .+||+||+|+.|+|++|++|||++|||||||+|||
T Consensus 606 -~~~~~~~~g~veyvd~~e~~~~~ia~~~~~~~~-----------~~th~ei~p~~il~v~a~lipf~~~NqspRn~yq~ 673 (1131)
T 4ayb_B 606 -TFDDLVRQGKIEYLDAEEEENAYVALEPSDLTP-----------EHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQS 673 (1131)
T ss_dssp -CHHHHHHTTSEEEEEHHHHTTCCEESSGGGCCT-----------TCSEECSCGGGGSBTTGGGCSSGGGSCHHHHHHHH
T ss_pred -hHHHHhhCCceeeeeccccceeEEEeecccccc-----------cccceeeccccccccccceecccccCccchheecc
Confidence 799999999999999999999999999988754 58999999999999999999999999999999999
Q ss_pred hcccccccccccceEEeecccceeeccCCcceeecccccccccccCCCCceeEEEEEecCCCCCCCcEEeeccccccCce
Q 001021 728 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 807 (1186)
Q Consensus 728 ~M~KQaig~~~~n~~~r~D~~~~~L~ypQ~PlV~t~~~~~~~~~~~p~G~N~~VAv~sy~GYn~EDaiiink~sv~rG~~ 807 (1186)
||+|||||++.+|+..|+|+++|+|+|||+|||+|+.++.++++++|+|+||+||||||+||||||||||||++++||+|
T Consensus 674 ~m~KQa~G~~~~~~~~r~D~~~~~l~ypQ~PlV~t~~~~~~~~~e~p~G~N~lVA~m~w~GYN~EDAIIine~~v~rg~f 753 (1131)
T 4ayb_B 674 AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMY 753 (1131)
T ss_dssp HHGGGBCSCCCGGGGTCCCSEEEEESSCCCCSSBCHHHHHHTCTTSCCSEEEEEEECCCSSCCCTTCEEEEHHHHTTTTT
T ss_pred ccccccCCceeecceeeeccccceeecCCccccccchhhhhccCCCCCceeEEEEEEccCCccHHHhhhhhcchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeecccCCcceeeecCCCCCCCCCCCCCCcCCCCCCCccCCCcEEcCCCEEEEEeCCCCccc-cccccCcc
Q 001021 808 RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRY 886 (1186)
Q Consensus 808 ~s~~~~~~~~~~~~~~~~~~e~~~~p~~~~~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~k~~p~~~~~-~~~~~~~~ 886 (1186)
||+||++|+++++++..+..|.+..|.++.........|++||+||||++|+.|++|||||||++|+...+ ...-....
T Consensus 754 tSihi~~y~~e~r~~~~g~~e~it~~~p~v~~~~~~~~~~~LDe~Gii~iGa~V~~gDilvGKvtP~~~~~~~~~~~~~~ 833 (1131)
T 4ayb_B 754 RSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQ 833 (1131)
T ss_dssp CEEEEEEEEEECCCCTTSCCCCCCCCCSSCSSCCCGGGGTTCCTTSBCCTTCEECTTCEEECCCCCCC-----------C
T ss_pred eeeEEEEEEEEEEecCCCCceEEecCCccccccchHHHhhcCCccccccCCcEecCCCEEEEEecCCcchhhhhhcCcce
Confidence 99999999999998877667778766543322223346899999999999999999999999999976321 11111122
Q ss_pred ccceeeEEeecCCCcEEEEEEEEecCCCceEEEEEEEeecCCCCcccccccCCCccEEEeeecCCCCCCCCCCCCCcEEe
Q 001021 887 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 966 (1186)
Q Consensus 887 ~~~~~s~~~~~~~~g~v~~v~~~~~~~~~~~vkv~~r~~R~p~iGDKfssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~ 966 (1186)
..+|+|+++++++.|+||.|.++.+.+|.+.|||++|+.|+|+||||||||||||||||+|||+|||||++||++|||||
T Consensus 834 ~~~d~sl~~~~g~~g~Vd~v~~~~~~~~~~~vkV~i~~~R~~~vGDK~agRHGnKGvvs~i~p~eDMPf~~dG~~~Diil 913 (1131)
T 4ayb_B 834 AKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVIL 913 (1131)
T ss_dssp CCCCCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEECCCTTCEEEETTSCEEEEEEEECTTTSEEETTSCCCSEEC
T ss_pred eeeeeeEEccCCCceEEEEEEEeeccCCceEEEEEEeccccCcccccccccccccceeeeecccccCCcCCCCCCccEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhHHhhhhhHhhhhcCCccccCCCCCccHHHHHHHHHHcCCCCCCeEEEeeCCCCceEEeeEeEeeeeh
Q 001021 967 NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1046 (1186)
Q Consensus 967 NPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tpF~~~~~~~~~~~l~~~g~~~~G~e~ly~g~tG~~~~~~if~G~~yy 1046 (1186)
||||||||||||||+|+++||||+++|.+.|+|||.+...+++++.|.++||+++|+++||||+|||+|+++||||++||
T Consensus 914 NP~gvPSRMniGqilE~~~gk~~~~~g~~~~atpf~~~~~e~~~~~l~~~g~~~~g~~~lydG~TGe~~~~~i~vG~~Yy 993 (1131)
T 4ayb_B 914 NPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYY 993 (1131)
T ss_dssp CTTSSTTTTCHHHHHHHHHHHHHHHHCCCCBCCTTSSCCTHHHHHHHHHTTSCTTSEECEEETTTCCBCSSCEEEEEEEE
T ss_pred CCCCCcccCcHHHHHHHHHHHHHHhCCCceecCccCCCcHHHHHHHHHHcCCCCCCCEEEeCCCCCCEecCcEEEEhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCceEEeccCCccccccCCCCcccCCCcceeeehhhhHHHhhccHHHHHHhhhcCCCcceeeeccccCcceee
Q 001021 1047 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1126 (1186)
Q Consensus 1047 ~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~Gr~~~GG~R~GEMErd~l~a~Gas~~L~erL~~~SD~~~~~vC~~cG~~~~~ 1126 (1186)
|||+|||+|||||||||||++|||||++||+|+|||||||||||||+|||||++|||||+.+||++.++||+.||+++++
T Consensus 994 ~kL~HmV~DKihaRs~GP~s~~TqQPl~Gra~~GG~RfGEME~~aL~a~Gaa~~LqE~L~~~SD~~~~~vc~~cG~~~~~ 1073 (1131)
T 4ayb_B 994 QKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWY 1073 (1131)
T ss_dssp EEBSCCHHHHCEEESSCCBCTTTCCBCSSGGGTCCCEECHHHHHHHHHHTCHHHHHHHTTTTTCEEEEEECSSSCCBCEE
T ss_pred hccchhhccCCEeeccCCCCCcccCCCCCcccCCCcceeHHHHHHHHHHhHHHHHHHHhhccCCccceeeccCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCceeeccCCCCCCceeecccHhhHHHHHHHHhCCCceEEEeccCCcc
Q 001021 1127 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQ 1177 (1186)
Q Consensus 1127 ~~~~~~~~C~~C~~~~~i~~v~iPy~~k~l~~EL~sm~i~~~l~~~~~~~~ 1177 (1186)
+...+.+.|+.|+++.++.++.||||||||+|||+||||++||.++|....
T Consensus 1074 ~~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL~sm~i~~~l~~~d~~~~ 1124 (1131)
T 4ayb_B 1074 DKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILEDRVGL 1124 (1131)
T ss_dssp ETTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHHHTTTCEEEEEEEESSCC
T ss_pred eccCCceeCCccCCCCCccccCCCHHHHHHHHHHHHCCcceEEEecccccc
Confidence 766678899999999999999999999999999999999999999887654
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=3.3e-225 Score=2106.80 Aligned_cols=940 Identities=25% Similarity=0.400 Sum_probs=790.0
Q ss_pred hhhhhhhhcccCccchHHHHHHHHHHHH----------HhhHHHHHhhcCCeeeCCCCCCCCCeEEEEeeEEEeCCcccC
Q 001021 26 EDAWAVISAYFEEKGLVRQQLDSFDEFI----------QNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTE 95 (1186)
Q Consensus 26 ~~~~~~i~~~f~~~~Lv~~hi~SFN~Fl----------~~gL~~ii~~~~pI~~~~~~~~~~~~~l~f~~i~i~~P~~~~ 95 (1186)
...|+.++.+|+.++|+++|++|||||| ++||++++++++||+.+.. .++++.|+|.+++|++|++
T Consensus 3 r~~~~~~~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~~--~~~~~~l~f~~~~l~~P~~-- 78 (1119)
T 2a6h_C 3 IKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDK--GKGGLVLDFLEYRLGEPPF-- 78 (1119)
T ss_dssp EEECCCCCCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECCS--SSCCEEEEECCCCBCCCSS--
T ss_pred ceecccccccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccCC--CCCeEEEEEEEEEEcCCCC--
Confidence 3479999999999999999999999999 9999999999999987321 2356899999999999976
Q ss_pred CCCccCCCChHHHHhcCCCcceeEEEEEEEEEeccCCCCcccccceeeEEEEecccceeeccCCccCCCCChhhhhhcCC
Q 001021 96 SDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 175 (1186)
Q Consensus 96 ~~~~~~~l~P~EcR~r~lTYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C~L~~~s~~eli~~gE 175 (1186)
+|+|||+|++||+|||+|+++++.++.. .++.++|++|+||||+.
T Consensus 79 --------~p~Ecr~r~lTYsapL~V~v~l~~~~~~--------~ik~~~V~iG~iPiMt~------------------- 123 (1119)
T 2a6h_C 79 --------PQDECREKDLTYQAPLYARLQLIHKDTG--------LIKEDEVFLGHIPLMTE------------------- 123 (1119)
T ss_dssp --------CHHHHHHTTCCCEEEBCCCEEECCSSSC--------CEECCCCCCCEEECCCT-------------------
T ss_pred --------CHHHHHhcCCcccceEEEEEEEEECCCc--------eeeeeEEEecCCCeECC-------------------
Confidence 7999999999999999999999764321 23445799999999995
Q ss_pred CCCCCCceEEEcCeeeEEEeeeeeccCeEEEEEecCCCcceEEEEEEEeecCCCCCCceEEEEEEecCCCCCCCCCcEEE
Q 001021 176 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 255 (1186)
Q Consensus 176 ~~~D~GGYFIING~ERVIi~Qe~~s~N~~~~~~~~~~~~~~~~~~irs~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~i~ 255 (1186)
||||||||+|||||+|+++|||++|....+..++..|++.+ ++.+|+|.... +. .++.+|
T Consensus 124 -----gGyFIING~ERVIVsQ~~rspgv~~~~~~~~~g~~~ysa~i--i~~rgs~l~~~----~d---------~~~~i~ 183 (1119)
T 2a6h_C 124 -----DGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIP--LPKRGPWIDLE----VE---------PNGVVS 183 (1119)
T ss_dssp -----TSCCCSSSSCEEECEEEEECSCEEEECCSSCSSCCEEEECC--CSSSSCCEEEE----EE---------TTTEEE
T ss_pred -----CcEEEEeCeEEEEEEEEecCCcEEEEeeccCCCceEEEEEE--EeccCceEEEE----Ec---------CCCEEE
Confidence 99999999999999999999999887543344456788877 67888884322 11 167999
Q ss_pred EEeccccccchHHHHHHHhcCCCHHHHHHHhccccCchhhHhhhHhhHhhh-hccccHHHHHHHHhhcCcccCCCchhhH
Q 001021 256 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA-FVIQNQQVALDYIGKRGATVGVTRDKRI 334 (1186)
Q Consensus 256 v~i~~~~~~IPl~ilLkALG~~sD~eI~~~i~~~~~~~~~~~~l~~~l~e~-~~i~t~~~al~yIg~r~~~~~~~~~~~~ 334 (1186)
+++++ ++||+++||||||+ ||+||++.|+. ++.+.+.| ++. ..+.|+++||.||+++++.- .....
T Consensus 184 vri~r--~kIPi~ilLrALG~-sD~eIl~~~~~---~~~~~~tl----~~d~~~~~~~~eAl~~i~~~lr~g---~~~~~ 250 (1119)
T 2a6h_C 184 MKVNK--RKFPLVLLLRVLGY-DQETLARELGA---YGELVQGL----MDESVFAMRPEEALIRLFTLLRPG---DPPKR 250 (1119)
T ss_dssp EESSS--SEECHHHHHHHHTC-CHHHHHHHHHS---SCTTHHHH----SSCHHHHTCHHHHHHHHHHHSSSC---CCSCC
T ss_pred EEEeC--cceeHHHHHHHHCC-CHHHHHHHHcc---CHHHHHHH----HhhhcccCCHHHHHHHHHHHhcCC---CCCcH
Confidence 99998 78999999999999 99999999974 23333333 221 12468999999999997642 22345
Q ss_pred HHHHHHHhhcc-------cCCCCCCCcc------------------chhHHHHHHHHHHHHHHhccCCc--CCCCCcccc
Q 001021 335 KYAKEILQKEM-------LPHVGTGDFC------------------ETKKAYYFGYIIHRLLLCALGRR--AEDDRDHYG 387 (1186)
Q Consensus 335 e~~~~iL~~~l-------l~Hl~~~~~~------------------~~~K~~~L~~Mv~kLl~l~~g~~--~~DD~D~l~ 387 (1186)
+.|+++|.+.| |+|+|....+ ...|. .+++|+++|+.+..|.+ .+||+|||+
T Consensus 251 e~a~~~l~~~ff~~~rydl~~vGr~~ln~kl~l~~~~~~~~~~~~~~l~~~-di~~mi~~Ll~l~~G~~~~~~DD~Dhlg 329 (1119)
T 2a6h_C 251 DKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDE-VFLPTLRYLFALTAGVPGHEVDDIDHLG 329 (1119)
T ss_dssp SSHHHHHTSSSSSSCCSCTTTSSHHHHHTTSCSCCSTTTTCCCSSSCCCCT-THHHHHHHHHHHHTSCSSCCCCCTTSTT
T ss_pred HHHHHHHHHhhCCcccccchhcchhhhhhhhccCCccccccccccccccHH-HHHHHHHHHHHhhcCCCCCCCcCcchhh
Confidence 67888999888 6787632100 11223 35689999999999999 999999999
Q ss_pred cceeccCchhhHHHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhccccchhhhhhhhcccCccccccccccccceeeec
Q 001021 388 NKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL 467 (1186)
Q Consensus 388 NkRv~l~G~Ll~~lfr~~l~~~~k~ik~~l~k~~~~~~~~~~~~~i~~~~It~~i~~~~sTGNw~~~~~~~~~sGvsq~l 467 (1186)
||||+++|+||+.+||..|.++.+.+++.+.+. ..+.+++..+++++.||++|++||+|| +|||+|
T Consensus 330 NkRv~~~GeLl~~~fr~~l~r~~~~i~~~~~~~--~~~~~~~~~~i~~~~It~~lk~ff~tg------------~lSQ~L 395 (1119)
T 2a6h_C 330 NRRIRTVGELMTDQFRVGLARLARGVRERMLMG--SEDSLTPAKLVNSRPLEAAIREFFSRS------------QLSQFK 395 (1119)
T ss_dssp TEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHS--CSSCCSSTTTCCSHHHHHHHHHHHHTC------------SSEEEC
T ss_pred ceEehhhhHHHHHHHHHHHHHHHHHHHHHhhhh--cccccchHHhhccchhHHHHHHHhhcc------------Cccccc
Confidence 999999999999999999999999999999764 335678888899999999999999986 478999
Q ss_pred cccChhhhhccccccCC--C--CCcCCCcCcccccCCCCccccccCCCCCCcccccccccceeEEEccCCCchhHHHHHH
Q 001021 468 NRLTYASTLSHLRRLNS--P--IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 543 (1186)
Q Consensus 468 ~r~N~l~~lSh~Rrv~~--~--~~~~~K~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~Is~~~~~~~i~~~l~ 543 (1186)
+|+||+|+||||||+++ | +++++|+++||+||||||||+||+|||||+|||||||||++|+|+..
T Consensus 396 dq~N~ls~LsH~RRisslgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~~~----------- 464 (1119)
T 2a6h_C 396 DETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDEL----------- 464 (1119)
T ss_dssp CCSSTHHHHHHHHEEESSSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEECSS-----------
T ss_pred cccchHhhhhhhheecccCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeeccc-----------
Confidence 99999999999999986 4 78999999999999999999999999999999999999999999841
Q ss_pred HhCCccccccCCCCCCCceEEEECCEEEEEEc--ChHHHHHHHHhhhhcCCCCCceEEEEeccCCeEEEEeCCCceeeeE
Q 001021 544 EWGTENFEEISPAVIPQATKIFVNGCWVGIHR--DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 621 (1186)
Q Consensus 544 ~~g~~~~~~~~~~~~~~~~~V~lnG~~iG~~~--~~~~l~~~lr~~rr~~~i~~~vsi~~~~~~~~i~I~td~gRl~RPl 621 (1186)
|+.. ..+.+| +||+|.+... +++. + .. .-|. ...+. .|.||++||+
T Consensus 465 --G~~e---------~p~~~V-~nG~v~~~i~yl~a~e--e-------~~-----~~i~----~~~~~--l~~gr~~r~~ 512 (1119)
T 2a6h_C 465 --GFIR---------TPYRRV-VGGVVTDEVVYMTATE--E-------DR-----YTIA----QANTP--LEGNRIAAER 512 (1119)
T ss_dssp --SCEE---------EEEEEE-ETTEEEEEEEEECHHH--H-------HH-----SCEE----CTTSC--BSSSBBCCSS
T ss_pred --Cccc---------CCcEEE-ECCEEeeeeEEeChhc--c-------cc-----eEEe----cCcee--ecCCccccCc
Confidence 3321 013455 6999865321 1100 0 00 0011 11122 2559999999
Q ss_pred EEEecccchhhHHHHHHHhcCCCCCCCCccccccCCcEEEeccccccceeeeecccccccccCCCCccccccceeeecCC
Q 001021 622 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 701 (1186)
Q Consensus 622 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g~iE~i~~~Ee~~~~Ia~~~~~~~~~~~~~k~~~~~~~th~Ei~p 701 (1186)
+++.++ + ||+ .+. ...+|||||||
T Consensus 513 i~~r~~-----------------------------~--e~~----------~~~---------------~~~~~~~ei~P 536 (1119)
T 2a6h_C 513 VVARRK-----------------------------G--EPV----------IVS---------------PEEVEFMDVSP 536 (1119)
T ss_dssp EEEESS-----------------------------S--SEE----------EEC---------------TTTCCEEECCT
T ss_pred eeEEec-----------------------------c--cee----------eec---------------hhHeEEEEecc
Confidence 887741 1 121 111 13589999999
Q ss_pred CccccccccccCCCCCCCCccchhhhhccccccccccc-----------------------------------ceEEeec
Q 001021 702 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT-----------------------------------NYQFRMD 746 (1186)
Q Consensus 702 ~~ilsv~AslIPF~~HNqSpRn~yqc~M~KQaig~~~~-----------------------------------n~~~r~D 746 (1186)
++||||+||||||+||||||||||||||||||||++.+ ++..|.|
T Consensus 537 ~~ilsv~aslIPF~ehn~s~R~lmgsnM~kQAv~l~~~~~p~vgTg~e~~~a~ds~~~~~a~~~G~v~~vd~~~i~ir~~ 616 (1119)
T 2a6h_C 537 KQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYE 616 (1119)
T ss_dssp TTTSCHHHHTCTTGGGBCHHHHHHHHHHHTTBCCBSSCCCCSEECSCHHHHHHHTTCSEECSSSEEEEEECSSBEEEEET
T ss_pred ccccccccccCCCcccCCCcccccccccccccccccccCCCeeeccccceeeeccCceeEeccCCEEEEecCceEEEEcc
Confidence 99999999999999999999999999999999998765 3567774
Q ss_pred ---ccceee----------ccCCcceeecccc----c------ccccccCCCCceeEEEEEecCCCCCCCcEEeeccccc
Q 001021 747 ---TLAYVL----------YYPQKPLVTTRAM----E------HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 803 (1186)
Q Consensus 747 ---~~~~~L----------~ypQ~PlV~t~~~----~------~~~~~~~p~G~N~~VAv~sy~GYn~EDaiiink~sv~ 803 (1186)
+..|.| +|||+|||+|+.. + .++++|+|+|+|++||||||+||||||||||||++++
T Consensus 617 ~~~~~~y~L~~~~rsnq~t~~~QkPiV~~g~~v~~g~~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~ 696 (1119)
T 2a6h_C 617 DGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLK 696 (1119)
T ss_dssp TTEEECCBCCCSEECTTSCEECCEECCCSSCCBCTTCEEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHH
T ss_pred CCcceeEEeeccccccccccccccceEeeCceeeccceeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHh
Confidence 457776 8999999999842 3 3578999999999999999999999999999999999
Q ss_pred cCceEEEEEEEEEeeecccCCcceeeec--CCCCCCCCCCCCCCcCCCCCCCccCCCcEEcCCCEEEEEeCCCCcccccc
Q 001021 804 RGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 881 (1186)
Q Consensus 804 rG~~~s~~~~~~~~~~~~~~~~~~e~~~--~p~~~~~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~k~~p~~~~~~~~ 881 (1186)
||+|||+|+++|+++.+++..+ .|.+. .|+. ....|++||+||||++|++|++|||||||++|+...+...
T Consensus 697 rg~~tSihi~~~e~~~r~~~~g-~eeit~~ip~~------~~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ 769 (1119)
T 2a6h_C 697 RDFYTSIHIERYEIEARDTKLG-PERITRDIPHL------SEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTP 769 (1119)
T ss_dssp TTCSEEEEEEEEEEEEECCTTC-CCBCCSCCSSS------CSGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCH
T ss_pred cCCceEEEEEEEEeeeeecCCC-ceeeeccCCCc------chhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCCh
Confidence 9999999999999998876433 35554 3432 2346899999999999999999999999999987433211
Q ss_pred ---------ccCccccceeeEEeecCCCcEEEEEEEEecCC-Cc-------eEEEEEEEeecCCCCcccccccCCCccEE
Q 001021 882 ---------QASRYTRRDHSISLRHSETGMVDQVLLTTNAD-GL-------RFVKVRVRSVRIPQIGDKFSSRHGQKGTV 944 (1186)
Q Consensus 882 ---------~~~~~~~~~~s~~~~~~~~g~v~~v~~~~~~~-~~-------~~vkv~~r~~R~p~iGDKfssRhGqKGvv 944 (1186)
+++....+|+|+++++++.|+|++|.++++++ |. +.|||++|+.|+|+|||||||||||||||
T Consensus 770 ee~ll~aifg~k~~~~rd~Sl~~~~~e~G~V~~V~~~~~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVi 849 (1119)
T 2a6h_C 770 EERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVV 849 (1119)
T ss_dssp HHHHHHHHHHSCCCCEEECCEECCSSCCCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEE
T ss_pred hhhhhhhhhcccccccceeeEEccCCccEEEEEEEEEccCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceE
Confidence 23445689999999999999999999998776 63 78999999999999999999999999999
Q ss_pred EeeecCCCCCCCCCCCCCcEEeCCCCCCCCCchhhHHhhhhhHhhhhcCCccccCC-CCCccHHHHHHHHHHc-------
Q 001021 945 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP-FTDVTVDNISKALHKC------- 1016 (1186)
Q Consensus 945 s~i~~~~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~g~~~d~tp-F~~~~~~~~~~~l~~~------- 1016 (1186)
|+|||+|||||++||++|||||||||||||||||||+|+++||||++.|... +|| |++.+.+++++.|+++
T Consensus 850 s~i~p~eDMPf~~dG~~pDiIlNPhgvPSRMtiGqllE~~lG~a~~~~g~~~-atp~F~~~~~~~i~~~L~~~~~~~~~~ 928 (1119)
T 2a6h_C 850 AKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRY-ISPIFDGAKEPEIKELLAQAFEVYFGK 928 (1119)
T ss_dssp EEEECTTTSCBCSSSCBCSEECCSTTTTTTTBTHHHHHHHHHHHHHHTTEEE-ECCTTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCCccccCCCCccEEeCCCcCccccchhhhhHHHhhhHHhhcCCce-EecccCCCCHHHHHHHHHHhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999976 999 9999999999999999
Q ss_pred ----------------------CC--------------CCCCeEEEeeCCCCceEEeeEeEeeeehhccccccCCceEEe
Q 001021 1017 ----------------------GY--------------QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1060 (1186)
Q Consensus 1017 ----------------------g~--------------~~~G~e~ly~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R 1060 (1186)
|| +++|+++||||+||++|+++||+|++|||||+|||+||+|||
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Gk~~lydG~TGe~~~~~I~vG~~Yy~kL~HmVdDKihaR 1008 (1119)
T 2a6h_C 929 RKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHAR 1008 (1119)
T ss_dssp HHHHTCCCBHHHHHHHHHHHTTTSSCTTSCHHHHHHHHHHTTEECCBCSSSCCBCSSCEEEEEEEEEEBCCCTTTSCEEE
T ss_pred ccccccccchhhhhhhhhhhcCCcccccccchhhhcccCCCCceEeecCCCCCCccceEEEEhHHhhcchhhcccCcEEe
Confidence 99 999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCcccCCCcceeeehhhhHHHhhccHHHHHHhhhcCCCcceeeeccccCcceeeccccCceeeccCCC
Q 001021 1061 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1061 ~~Gp~~~lT~QP~~Gr~~~GG~R~GEMErd~l~a~Gas~~L~erL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
|+|||+.|||||++||+|+|||||||||||||+|||||++|||||+.+||. .||+.. .+|..|+
T Consensus 1009 s~GP~s~lTqQP~~Gra~~GGqRfGEME~~aL~a~GAa~~L~E~L~~kSD~-------~~gr~~--------~~~~~~~- 1072 (1119)
T 2a6h_C 1009 STGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDD-------IEGRNA--------AYEAIIK- 1072 (1119)
T ss_dssp SSCCBCSSSCSBCCCSSSCCCEEECHHHHHHHHHTTCSHHHHHHHTTTTTC-------HHHHHH--------HHHHHHT-
T ss_pred eccccceeecCCCcccccCCCeeeehhehhhhhhccHHHHHHHHhccCCcc-------cccccc--------eEEEeec-
Confidence 999999999999999999999999999999999999999999999999995 456532 2466674
Q ss_pred CCCceeecccHhhHHHHHHHHhCCCceEEEeccCC
Q 001021 1141 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 1175 (1186)
Q Consensus 1141 ~~~i~~v~iPy~~k~l~~EL~sm~i~~~l~~~~~~ 1175 (1186)
+.++.++.+|||||||+|||+||||++++.+++..
T Consensus 1073 ~~~i~~~~iP~sfk~L~~EL~sl~i~~~l~~~~~~ 1107 (1119)
T 2a6h_C 1073 GEDVPEPSVPESFRVLVKELQALALDVQTLDEKDN 1107 (1119)
T ss_dssp TCCCCCCCCCHHHHHHHHHHHHSSCEECCBCSSSC
T ss_pred CCccCccCCCHHHHHHHHHHHhCCCceEEEecCCc
Confidence 56899999999999999999999999999987543
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=8.1e-211 Score=1948.14 Aligned_cols=939 Identities=25% Similarity=0.379 Sum_probs=789.1
Q ss_pred hhhhhhhhcccCccchHHHHHHHHHHHHH------hhHHHHHhhcCCeeeCCCCCCCCCeEEEEeeEEEeCCcccCCCCc
Q 001021 26 EDAWAVISAYFEEKGLVRQQLDSFDEFIQ------NTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 99 (1186)
Q Consensus 26 ~~~~~~i~~~f~~~~Lv~~hi~SFN~Fl~------~gL~~ii~~~~pI~~~~~~~~~~~~~l~f~~i~i~~P~~~~~~~~ 99 (1186)
..+|+.++..++.|+|+++|++||+|||+ +||++++++++||+.. ++.+.|+|.++++++|.+++
T Consensus 12 R~~f~k~~~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~d~-----~~~~~Lef~~y~l~~Pk~~~---- 82 (1342)
T 3lu0_C 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-----SGNSELQYVSYRLGEPVFDV---- 82 (1342)
T ss_dssp CCCSSCCCCSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCEET-----TTTEECCEEEECCCCCSCCS----
T ss_pred EeccccCCcCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEECC-----CCCEEEEEeeEEeCCCCCCH----
Confidence 55788899999999999999999999997 8999999999999853 35789999999999998854
Q ss_pred cCCCChHHHHhcCCCcceeEEEEEEEEEeccCCCCcccccceeeEEEEecccceeeccCCccCCCCChhhhhhcCCCCCC
Q 001021 100 TATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 179 (1186)
Q Consensus 100 ~~~l~P~EcR~r~lTYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C~L~~~s~~eli~~gE~~~D 179 (1186)
.|||+|++||+|||+|++++++.+.+.++ ..+++++.++|++|+||+|+.
T Consensus 83 ------~Ec~~r~lTYsapL~v~~rL~~~~~d~~~-~~~~eikeq~Vy~GdiPLMT~----------------------- 132 (1342)
T 3lu0_C 83 ------QECQIRGVTYSAPLRVKLRLVIYEREAPE-GTVKDIKEQEVYMGEIPLMTD----------------------- 132 (1342)
T ss_dssp ------STTTSSCCCCCCCCBEEECCEECCCSSCC-CCCCCCCBCCCBCCCCCCCCS-----------------------
T ss_pred ------HHHHhcCCCcccceEEEEEEEEecccccc-ccccceEEEEEEEecCceECC-----------------------
Confidence 69999999999999999999887543322 223456788999999999998
Q ss_pred CCceEEEcCeeeEEEeeeeeccCeEEEEEec---CCCcceEEEEEEEeecCCCCCCceEEEEEEecCCCCCCCCCcEEEE
Q 001021 180 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKR---QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 256 (1186)
Q Consensus 180 ~GGYFIING~ERVIi~Qe~~s~N~~~~~~~~---~~~~~~~~~~irs~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~i~v 256 (1186)
+|||||||+|||||+|++||||.+|..... ..++..|+|.| +|.+|+|...+++ .++.+|+
T Consensus 133 -~GtFIING~ERVIVsQl~RSPGVyf~~~~~k~~~~gk~lysa~I--IP~RGsWlefe~D-------------~kd~l~v 196 (1342)
T 3lu0_C 133 -NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI--IPYRGSWLDFEFD-------------PKDNLFV 196 (1342)
T ss_dssp -SSCEESSSSEEECCEEEECCSSCCCCSCCSCSSSCCCSCCEEEE--CCSSSCCEEEEEE-------------TTTEEEE
T ss_pred -CcEEEEcCceEEEEEeecccCceeEeccccccCCCCceEEEEEE--ecCCCccEEEEEc-------------CCCeEEE
Confidence 999999999999999999999966653211 13566788977 8899999654442 1679999
Q ss_pred EeccccccchHHHHHHHhcCCCHHHHHHHhccccC---------------------------------------------
Q 001021 257 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ--------------------------------------------- 291 (1186)
Q Consensus 257 ~i~~~~~~IPl~ilLkALG~~sD~eI~~~i~~~~~--------------------------------------------- 291 (1186)
++++ +++||+++||||||++ ++||++.++....
T Consensus 197 rIdr-~rKipvt~lLrALG~~-~~~Il~~f~~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~it~~~~ 274 (1342)
T 3lu0_C 197 RIDR-RRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 (1342)
T ss_dssp EESS-CSCEETTHHHHTTTCC-HHHHHTTTSCEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSEECSHHH
T ss_pred EecC-CCceeeehhHhHhCCC-HHHHHHHhcccceEEeccCceeeecchhhhcccccccchhccccceecccccccHHHH
Confidence 9998 7799999999999995 6899988742100
Q ss_pred ---------------------------------------chhhHhhhHhhHhhh-------------------------h
Q 001021 292 ---------------------------------------DTQMMELLRPSLEEA-------------------------F 307 (1186)
Q Consensus 292 ---------------------------------------~~~~~~~l~~~l~e~-------------------------~ 307 (1186)
++++.+.+...+.++ .
T Consensus 275 ~~l~~~g~~~i~v~~~~l~g~~la~divd~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~~tl~~d 354 (1342)
T 3lu0_C 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 (1342)
T ss_dssp HHHHHTTCCCEECCSHHHHTSEECSCEECTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGGGTTTTC
T ss_pred HHHHhccCcccccCHHHhhcchhhheeeecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHHHHHhhc
Confidence 000000000011100 1
Q ss_pred ccccHHHHHHHHhhcCcccCCCchhhHHHHHHHHhhccc-------CCCC---------CC--CccchhHHHHHHHHHHH
Q 001021 308 VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML-------PHVG---------TG--DFCETKKAYYFGYIIHR 369 (1186)
Q Consensus 308 ~i~t~~~al~yIg~r~~~~~~~~~~~~e~~~~iL~~~ll-------~Hl~---------~~--~~~~~~K~~~L~~Mv~k 369 (1186)
...|+++|+.+|+++++.- .....+.|+.++++.|| +|+| .+ ..+...+...+..++++
T Consensus 355 ~~~~~~eAl~~iyr~lrpg---ep~t~e~a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~i~~ 431 (1342)
T 3lu0_C 355 PTNDRLSALVEIYRMMRPG---EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 (1342)
T ss_dssp CCCSSHHHHHHHHHHHSCS---SCCCTTHHHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHHHHH
Confidence 1357999999999998743 22335678888776664 7776 11 12223344456689999
Q ss_pred HHHhccCCcCCCCCcccccceeccCchhhHHHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhccccchhhhhhhhcccC
Q 001021 370 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 449 (1186)
Q Consensus 370 Ll~l~~g~~~~DD~D~l~NkRv~l~G~Ll~~lfr~~l~~~~k~ik~~l~k~~~~~~~~~~~~~i~~~~It~~i~~~~sTG 449 (1186)
|+.+..|....||+|||+||||+++|+||+++||.+|.++.+.+++++.+. ..+.+++..+++++.++.++++||.
T Consensus 432 Li~l~~g~~~~DDiDHLgNrRvr~vGeLl~~qfr~~l~r~~r~i~~~~~~~--~~~~~~~~~lin~~~i~~~~k~ffg-- 507 (1342)
T 3lu0_C 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFG-- 507 (1342)
T ss_dssp HHHHHHTSSCCCCSSSTTTSEEECHHHHHHHTHHHHHHHHHHHHTTHHHHC--CSSCCSSTTTCCSSTTHHHHTTTTT--
T ss_pred HHHHhhCCCCCcchhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccCCHHHHhccchHHHHHHHHhC--
Confidence 999999999999999999999999999999999999999999999999763 3356778899999999999999874
Q ss_pred ccccccccccccceeeeccccChhhhhccccccCC--C--CCcCCCcCcccccCCCCccccccCCCCCCcccccccccce
Q 001021 450 NWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--P--IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 525 (1186)
Q Consensus 450 Nw~~~~~~~~~sGvsq~l~r~N~l~~lSh~Rrv~~--~--~~~~~K~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~ 525 (1186)
++||||+|||+||||+|||+||+++ | +.++++.+++|+|||||||+|||+|||||+|||||+|||+
T Consensus 508 ----------~s~lSQ~lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~ 577 (1342)
T 3lu0_C 508 ----------SSQLSQFMVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 (1342)
T ss_dssp ----------TCSSCEECCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCS
T ss_pred ----------ccccceeecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhh
Confidence 5899999999999999999999984 3 4688999999999999999999999999999999999999
Q ss_pred eEEEcc-CCCchhHHHHHHHhCCccccccCCCCCCCceEEEECCEEEEEEcChHHHHHHHHhhhhcCCCCCceEEEEecc
Q 001021 526 MVYITV-GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 604 (1186)
Q Consensus 526 ~a~Is~-~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~l~~~lr~~rr~~~i~~~vsi~~~~~ 604 (1186)
+|+|+. |+.++ .+.+..||++-
T Consensus 578 ~a~in~~Gfiet------------------------Pyr~V~~g~v~--------------------------------- 600 (1342)
T 3lu0_C 578 YAQTNEYGFLET------------------------PYRKVTDGVVT--------------------------------- 600 (1342)
T ss_dssp SCCBCSSSCBCE------------------------EEEEEETTEEE---------------------------------
T ss_pred eEEeccCCcccC------------------------CcEEEECCEEc---------------------------------
Confidence 999975 33221 13334455420
Q ss_pred CCeEEEEeCCCceeeeEEEEecccchhhHHHHHHHhcCCCCCCCCccccccCCcEEEeccccccceeeeecccccccccC
Q 001021 605 LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 684 (1186)
Q Consensus 605 ~~~i~I~td~gRl~RPl~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g~iE~i~~~Ee~~~~Ia~~~~~~~~~~~ 684 (1186)
+.|+|++|.||+...||.....+...+.
T Consensus 601 ----------------------------------------------------~~i~yLsA~eE~~~~IAqan~~l~~~g~ 628 (1342)
T 3lu0_C 601 ----------------------------------------------------DEIHYLSAIEEGNYVIAQANSNLDEEGH 628 (1342)
T ss_dssp ----------------------------------------------------EEEEEECTTTGGGSCBCCSSSCCSSSSC
T ss_pred ----------------------------------------------------CceeeCChHHhcCceEEecCcccCCCCc
Confidence 2479999999999999998777655432
Q ss_pred CCC-------c-----cccccceeeecCCCccccccccccCCCCCCCCccchhhhhccccccccc---------------
Q 001021 685 HPE-------E-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY--------------- 737 (1186)
Q Consensus 685 ~~k-------~-----~~~~~~th~Ei~p~~ilsv~AslIPF~~HNqSpRn~yqc~M~KQaig~~--------------- 737 (1186)
+.. . ..+.+++||+|+|.+|+||+||||||++||||||++|||||||||||+.
T Consensus 629 ~~~~~v~~R~~~e~~~~~~~~v~~~dvsP~qivSvaaslIPFLEhdDAnRaLMGsNMQRQAVPLl~~e~p~VgTG~E~~~ 708 (1342)
T 3lu0_C 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 (1342)
T ss_dssp CSCSSEEEECSSCEEEECTTTCCEEESCTTTTSCHHHHSCTTSTTBCHHHHHHHHHTTTTBCCCSSCCCCSSBCSCHHHH
T ss_pred ccCCeEEEEecCceEEeChHHCeeEecCHHHhcchhhccCCCcccCCccccchhhhccccccccccCCCCeEecccchhe
Confidence 210 0 0245789999999999999999999999999999999999999999998
Q ss_pred --------------------ccceEEeecc----------ccee----------eccCCcceeecc----ccccc-----
Q 001021 738 --------------------VTNYQFRMDT----------LAYV----------LYYPQKPLVTTR----AMEHL----- 768 (1186)
Q Consensus 738 --------------------~~n~~~r~D~----------~~~~----------L~ypQ~PlV~t~----~~~~~----- 768 (1186)
+.++.+|.|. ..|. .||+|+|+|+++ ..+++
T Consensus 709 a~dsg~~i~a~~~G~v~~vda~~I~Ir~~~~~~~~~~~~~~~y~L~kf~RSNq~Tc~~QrPiV~~G~~V~~GdilADG~s 788 (1342)
T 3lu0_C 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 (1342)
T ss_dssp HHHTTTSCBCSSCBEECCCCSSBCCEEECSSSSSSSCCEEECCBCCCSCBCSSSCBCCCCBCCCSSCCBCTTCBCBCCSS
T ss_pred eecCCceEEecCCCEEEEecCCeEEEEeCCCccccccCcceEEEecccccccccccccccceeecCCEEecCcEeccccc
Confidence 6677888775 2232 489999999997 44665
Q ss_pred -ccccCCCCceeEEEEEecCCCCCCCcEEeeccccccCceEEEEEEEEEeeecccCCcceeeec--CCCCCCCCCCCCCC
Q 001021 769 -HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGS 845 (1186)
Q Consensus 769 -~~~~~p~G~N~~VAv~sy~GYn~EDaiiink~sv~rG~~~s~~~~~~~~~~~~~~~~~~e~~~--~p~~~~~~~~~~~~ 845 (1186)
..+|+|+|+|++||||||.|||||||||||+++|++|+|||+|+++|+++.+++..| .|+++ +|+. ....
T Consensus 789 t~~GElaLG~N~lVAfMpW~GYNfEDAIlISErlV~eD~fTSIHIee~e~~aRdtklG-~EeiTrdIPnv------~e~a 861 (1342)
T 3lu0_C 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPNV------GEAA 861 (1342)
T ss_dssp CSSSSCCCSEECCEECCCCSSTTSSSEEEECTHHHHTTTSCEEEEEEEEEECCEETTE-ECCCCSCCSSC------CHHH
T ss_pred ccCCeeecccccEEEEecccCcccccchhhhhhhhhcCCceeEEEEEEeeeeeecCCC-CceecccCCCC------ChHH
Confidence 899999999999999999999999999999999999999999999999999987544 56664 5553 2335
Q ss_pred cCCCCCCCccCCCcEEcCCCEEEEEeCCCCccccc---------cccCccccceeeEEeecCCCcEEEEEEEEecC----
Q 001021 846 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ---------GQASRYTRRDHSISLRHSETGMVDQVLLTTNA---- 912 (1186)
Q Consensus 846 ~~~ld~dGi~~~g~~v~~gd~l~~k~~p~~~~~~~---------~~~~~~~~~~~s~~~~~~~~g~v~~v~~~~~~---- 912 (1186)
+++||++|||++|+.|++|||||||++|+...+.. .+++....+|+|+++++++.|+|..|.+++..
T Consensus 862 l~~LDe~GIv~iGa~V~~GDILVGKvtPkge~~~tpEekLLraIFGeka~~vkDtSL~vp~g~~G~Vidv~~f~r~~~~k 941 (1342)
T 3lu0_C 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 (1342)
T ss_dssp HHSBCSSSCBCTTCCCCTTCEEECCCCBCCTTTCCHHHHHGGGTSCSSSSSBCCCCEECCTTCCCEEEECCCCCCGGGCC
T ss_pred HhcCCCCCCeecCcEECCCCEEEeccCCCCCCcCChHHHHHHHHhcCcccccccCcEecCCCCcEEEEEEEEEecccccc
Confidence 88999999999999999999999999999743221 24566789999999999999999999766531
Q ss_pred --------------------------------------------------------------------------------
Q 001021 913 -------------------------------------------------------------------------------- 912 (1186)
Q Consensus 913 -------------------------------------------------------------------------------- 912 (1186)
T Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~g~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1021 (1342)
T 3lu0_C 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 (1342)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhCCHHHhhccccCcHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------CCceEEEEEEEeecCCCCcccccccCCCccEEEeeecCCCCCCCCCCCCCcEEeCCC
Q 001021 913 -----------------------DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 969 (1186)
Q Consensus 913 -----------------------~~~~~vkv~~r~~R~p~iGDKfssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~NPh 969 (1186)
+..+.|||++|+.|+|++|||||||||||||||+|||+|||||++||++||||||||
T Consensus 1022 ~~~~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~kRk~qvGDK~AgRHGnKGVis~I~p~EDMPf~~dG~~pDIIlNP~ 1101 (1342)
T 3lu0_C 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 (1342)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEEEECCCTTCEEECSSSCCEEECCCCCTTTSCEETTEEECSEECCGG
T ss_pred HHHHHHHHHHHHHhcccCcccCcCCceEEEEEEEEeccCCCCCCcccccCCCceEEEEecccCCCCCCCCCCCcEEeCCC
Confidence 135799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHHhhhhhHhhhhcCCc-----------------------------------------------------c
Q 001021 970 AIPSRMTIGQLIECIMGKVAAHMGKE-----------------------------------------------------G 996 (1186)
Q Consensus 970 ~~PSRMtiGql~E~~~gk~~~~~g~~-----------------------------------------------------~ 996 (1186)
||||||||||++|+++||||+..|.. .
T Consensus 1102 gvPSRMnIGqilE~~lG~aa~~~G~~i~~~~~~~~~~~~~r~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 1181 (1342)
T 3lu0_C 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 (1342)
T ss_dssp GTTSSCBTHHHHHHHHHHGGGTSSTHHHHTTTHHHHCTTTHHHHHHHTTTTCCCSSSCCTTTSCHHHHHHTTTTTSSCTT
T ss_pred CCCCccchhhhhHHhhhHHHHhcCchHHHHHHhhhhhHHHHHHHHHHhhcccccchhhhhcccchHHHHHHhhhhccCCc
Confidence 99999999999999999999988752 1
Q ss_pred ccCC-CCCccHHHHHHHHHHcCCCCCCeEEEeeCCCCceEEeeEeEeeeehhccccccCCceEEeccCCccccccCCCCc
Q 001021 997 DATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1075 (1186)
Q Consensus 997 d~tp-F~~~~~~~~~~~l~~~g~~~~G~e~ly~g~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~G 1075 (1186)
.||| |++.+.+++.+.|.++||+++|+++||||+||++|+++||||++|||||+|||+||+||||+|||+.+||||++|
T Consensus 1182 ~aTPvFdga~~~~i~~~L~~aG~~~~Gk~~LydGrTGe~f~~~V~vG~~YylKL~HmVdDKiHaRs~GPysllTqQPl~G 1261 (1342)
T 3lu0_C 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 (1342)
T ss_dssp CBCCSSSSCCHHHHHHHTSSSSSCSSSCBCCBCSSSCSBCSSCBCEECCEEEEBCCCGGGSCCCBSSCCBCSSSCCBCCC
T ss_pred ccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCCCCCCcccceeeeehhHhhhhhccccceEEeccCCCcccccCCCCc
Confidence 2888 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeehhhhHHHhhccHHHHHHhhhcCCCcceeeeccccCcceeeccccCceeeccCCCCCCceeecccHhhHH
Q 001021 1076 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 1155 (1186)
Q Consensus 1076 r~~~GG~R~GEMErd~l~a~Gas~~L~erL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPy~~k~ 1155 (1186)
|+++|||||||||||||+|||||++|||||+.+||. .||+.. .+|..|+ +.++..+.||||||+
T Consensus 1262 kaq~GGqRfGEMEvwaL~a~GAa~~LqE~Lt~kSDd-------v~gr~~--------~y~~i~~-g~~~~~~~iPesfkv 1325 (1342)
T 3lu0_C 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD-------VNGRTK--------MYKNIVD-GNHQMEPGMPESFNV 1325 (1342)
T ss_dssp SSSCCCCCCCHHHHHHHHHSSCSHHHHHHTTTSSSC-------HHHHHH--------HHHHHTT-TSCCCCCCCCHHHHH
T ss_pred cccCCCeeeehHHHHHHHhccHHHHHHHHhhcCCCc-------cccchh--------hhhhhcC-CCCCCcCCCCHHHHH
Confidence 999999999999999999999999999999999994 466543 2455564 468889999999999
Q ss_pred HHHHHHhCCCceEEE
Q 001021 1156 LFQELMAMAIAPRML 1170 (1186)
Q Consensus 1156 l~~EL~sm~i~~~l~ 1170 (1186)
|++||+||||++++.
T Consensus 1326 L~~EL~sl~l~v~l~ 1340 (1342)
T 3lu0_C 1326 LLKEIRSLGINIELE 1340 (1342)
T ss_dssp HHHHHHTSSCCEECC
T ss_pred HHHHHHhCCCCeEec
Confidence 999999999999874
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.96 E-value=1.1e-29 Score=264.37 Aligned_cols=123 Identities=28% Similarity=0.461 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHH----------HhhHHHHHhhcCCeeeCCCCCCCCCeEEEEeeEEEeCCcccCCCCccCCCChHHHH
Q 001021 40 GLVRQQLDSFDEFI----------QNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFPKAAR 109 (1186)
Q Consensus 40 ~Lv~~hi~SFN~Fl----------~~gL~~ii~~~~pI~~~~~~~~~~~~~l~f~~i~i~~P~~~~~~~~~~~l~P~EcR 109 (1186)
+|+++|++|||||+ ++||++++++++||+...+ .++++.|+|.++++++|.+ +|+|||
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~--~~~~~~L~f~~~~l~~P~~----------~p~Ecr 69 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDK--GKGGLVLDFLEYRIGDPPF----------SQDECR 69 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCS--SSCCEEEEEEEEEECCCSS----------CHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccC--CCCeEEEEEEEEEecCCCC----------CHHHHH
Confidence 69999999999999 8999999999999986532 1256899999999999964 899999
Q ss_pred hcCCCcceeEEEEEEEEEeccCCCCcccccceeeEEEEecccceeeccCCccCCCCChhhhhhcCCCCCCCCceEEEcCe
Q 001021 110 LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 189 (1186)
Q Consensus 110 ~r~lTYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C~L~~~s~~eli~~gE~~~D~GGYFIING~ 189 (1186)
+|++||+|||+|++++...+.. +++.++|++|+||||+. ||||||||+
T Consensus 70 ~r~lTYsapl~v~v~l~~~~~~--------~i~~~~v~iG~iPlMt~------------------------gGyFIING~ 117 (188)
T 3mlq_A 70 EKDLTYQAPLYARLQLIHKDTG--------LIKEDEVFLGHLPLMTE------------------------DGSFIINGA 117 (188)
T ss_dssp HTTCCCEEEEEEEEEEEETTTC--------CEEEEEEEEEEEECCCT------------------------TSCEEETTE
T ss_pred hcCCCcceeEEEEEEEEECCCc--------eEEEEEEEEcccCEECC------------------------CCEEEECCE
Confidence 9999999999999999754321 34678999999999994 999999999
Q ss_pred eeEEEeeeeeccCeEEE
Q 001021 190 EKVLIAQEKMSTNHVYV 206 (1186)
Q Consensus 190 ERVIi~Qe~~s~N~~~~ 206 (1186)
|||||+||++++|.++.
T Consensus 118 ERVIVsQe~r~~gell~ 134 (188)
T 3mlq_A 118 DRVIVSQGGRTVGELMA 134 (188)
T ss_dssp EEECCCCSSSCHHHHHH
T ss_pred EEEEEEeecccCCeeeE
Confidence 99999999999998765
No 7
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=99.18 E-value=1.3e-11 Score=144.88 Aligned_cols=63 Identities=38% Similarity=0.698 Sum_probs=58.9
Q ss_pred cceeeeccccCcceeeccccCceeeccCCCCCCceeecccHhhHHHHHHHHhCCCceEEEecc
Q 001021 1111 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1173 (1186)
Q Consensus 1111 ~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPy~~k~l~~EL~sm~i~~~l~~~~ 1173 (1186)
++.++||..||++++.+.+...++|+.|+++.++.+|.||||||||+|||+||||.+||.+++
T Consensus 2 k~~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL~smnI~~rl~~~d 64 (436)
T 3qqc_A 2 KTEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLSE 64 (436)
T ss_dssp CEEEEEETTTCCBCEEETTTTEEECTTTCCSSSEEEEEECHHHHHHHHHHHHTTBCCEEEEEC
T ss_pred ceEEEEeCCCCceeeeccccCccCCCCCCCCCeEEEEEcChHHHHHHHHHHhCCeeceeeccc
Confidence 578999999999998877777899999999999999999999999999999999999999974
No 8
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=99.12 E-value=4.6e-11 Score=125.75 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=77.3
Q ss_pred EEEEEEEeeecccCCcceeeecCCCCCCCCCCCCCCcCCCCCCCccCCCcEEcCCCEEEEEeCCCCccccc---------
Q 001021 810 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 880 (1186)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~e~~~~p~~~~~~~~~~~~~~~ld~dGi~~~g~~v~~gd~l~~k~~p~~~~~~~--------- 880 (1186)
+|+..|+++.+.+..| .|.|+.+-++ +....|++||++||+++|++|++|||||||++|+...++.
T Consensus 2 iHIeeyei~~r~tk~G-~EeIT~dIPn----v~e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~~tpEekLL~aI 76 (228)
T 3tbi_B 2 IHIQELACVSRDTKLG-PEEITADIPN----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 76 (228)
T ss_dssp CEEEEEEEEEEEETTE-ECEESSCCSS----CCHHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGGCCHHHHHHHHH
T ss_pred ccEEEEEEEEEEcCCC-CeEEecCCCC----ccHHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCCCChHHHHHHHH
Confidence 5899999999887554 5888643321 1234589999999999999999999999999998743211
Q ss_pred cccCccccceeeEEeecCCCcEEEEEEEEecC
Q 001021 881 GQASRYTRRDHSISLRHSETGMVDQVLLTTNA 912 (1186)
Q Consensus 881 ~~~~~~~~~~~s~~~~~~~~g~v~~v~~~~~~ 912 (1186)
.+.+....+|+|+++++++.|+|+.|.+++..
T Consensus 77 fg~k~~~vkDtSL~vp~G~~G~VidV~if~r~ 108 (228)
T 3tbi_B 77 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 108 (228)
T ss_dssp HCTTSSCEEECCEECCSSCBEEEEEEEEEEBT
T ss_pred hCCccccceeCcEecCCCCcEEEEEEEEEecC
Confidence 23455678999999999999999999998654
No 9
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.77 E-value=4e-08 Score=108.43 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=53.9
Q ss_pred eccCeEEEEEec---CCCcceEEEEEEEeecCCCCCCceEEEEEEecCCCCCCCCCcEEEEEeccccccchHHHHHHHhc
Q 001021 199 MSTNHVYVFKKR---QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 275 (1186)
Q Consensus 199 ~s~N~~~~~~~~---~~~~~~~~~~irs~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~i~v~i~~~~~~IPl~ilLkALG 275 (1186)
|||+.+|..... ..++..|+|.| +|.+|+|...+++ .++.+|+++++ ++++|+++||||||
T Consensus 4 ~SPGv~f~~~~~~ths~g~~~y~~~i--IP~RGsWlefe~d-------------~~d~~~vrIdr-~rK~p~t~lLrAlG 67 (296)
T 3lti_A 4 MSPGVFFDSDKGKTHSSGKVLYNARI--IPYRGSWLDFEFD-------------PKDNLFVRIDR-RRKLPATIILRALN 67 (296)
T ss_dssp CCCEEEEEEC---------CCEEEEE--ECSBSCCEEEEEC-------------TTSCEEEEETT-CCCEETHHHHHHTT
T ss_pred CCCEEEEecccCCcCCCCcEEEEEEE--ecCCCceEEEEEc-------------CCCeEEEEEcC-cccchHHHHHHHcC
Confidence 789988875421 23556788888 8999999654431 25689999998 67999999999999
Q ss_pred CCCHHHHHHHh
Q 001021 276 FVADKDILEHI 286 (1186)
Q Consensus 276 ~~sD~eI~~~i 286 (1186)
+ +++||++.+
T Consensus 68 ~-~~edIL~~F 77 (296)
T 3lti_A 68 Y-TTEQILDLF 77 (296)
T ss_dssp C-CHHHHHHHH
T ss_pred C-ChHHHHHhc
Confidence 9 578999988
No 10
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=96.12 E-value=0.0028 Score=66.06 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=54.3
Q ss_pred cccceeccCchhhHHHHHHHHHHHHHHHHHHHhhhhcCCCccchhhhccccchhhhhhhhccc
Q 001021 386 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 448 (1186)
Q Consensus 386 l~NkRv~l~G~Ll~~lfr~~l~~~~k~ik~~l~k~~~~~~~~~~~~~i~~~~It~~i~~~~sT 448 (1186)
+-+|+.+++|+||+..++.+|.+++|.+|+++.-. ....+++.+++|.++++.+++.||.|
T Consensus 121 IVsQe~r~~gell~~q~r~gl~r~ek~~~e~~~~~--~~~~~~~~~l~n~kp~~~~ik~ff~s 181 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFRVGLARLARGVRERMVMG--SPDTLTPAKLVNSRPLEAALREFFSR 181 (188)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHS--CGGGCCHHHHCCCHHHHHHHHHHHHT
T ss_pred EEEeecccCCeeeEEehhhHHHHHHHHHHhhhccc--cccccCcccchhhHHHHHHHHHhhcc
Confidence 56799999999999999999999999999988743 23567899999999999999999976
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=70.92 E-value=1.4 Score=38.42 Aligned_cols=48 Identities=17% Similarity=0.375 Sum_probs=31.6
Q ss_pred ceeeeccccCcceeeccccCceeeccCCCCCCcee------ecccHhhHHHHHHHH
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ------VHIPYACKLLFQELM 1161 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~~~~i~~------v~iPy~~k~l~~EL~ 1161 (1186)
|.+..|+ ||...+......+..|+ |+..-++.+ +.-.....-+...|+
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lq 55 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQ 55 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHS
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHH
Confidence 6788999 99998876666677898 997544433 333444444444444
No 12
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=62.85 E-value=3.7 Score=43.16 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=22.2
Q ss_pred CcceeeeccccCcceeeccccCceeeccCCCC
Q 001021 1110 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1141 (1186)
Q Consensus 1110 D~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~~ 1141 (1186)
|....|+|.+||-+... ...+.|+.|+..
T Consensus 167 ~~~~~~~C~~CG~i~~g---~~p~~CP~C~~~ 195 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKG---EDFEKCPICFRP 195 (202)
T ss_dssp CSCCEEECSSSCCEEES---SCCSBCTTTCCB
T ss_pred CCCcEEEECCCCCEEcC---cCCCCCCCCCCC
Confidence 55679999999988543 234799999874
No 13
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=43.76 E-value=13 Score=37.84 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=19.2
Q ss_pred eeeeccccCcceeeccccCceeeccCCCC
Q 001021 1113 RVHVCEHCGLIAIANLKKNSFECRGCKNK 1141 (1186)
Q Consensus 1113 ~~~vC~~cG~~~~~~~~~~~~~C~~C~~~ 1141 (1186)
..|+|.+||-+.... -...|+.|+.+
T Consensus 137 ~~~~C~~CG~i~~~~---~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVDE---APEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEESC---CCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCCC---CCCCCCCCCCC
Confidence 589999999887522 12389999864
No 14
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=42.53 E-value=12 Score=38.89 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=20.5
Q ss_pred CcceeeeccccCcceeeccccCceeeccCCCC
Q 001021 1110 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1141 (1186)
Q Consensus 1110 D~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~~ 1141 (1186)
|....|+|.+||-+...... .-.|+.|+..
T Consensus 151 ~~~~~~~C~~CG~~~~g~~~--p~~CP~C~~~ 180 (191)
T 1lko_A 151 EQATKWRCRNCGYVHEGTGA--PELCPACAHP 180 (191)
T ss_dssp EEEEEEEETTTCCEEEEEEC--CSBCTTTCCB
T ss_pred CCCceEEECCCCCEeeCCCC--CCCCCCCcCC
Confidence 34458999999988643211 1289999874
No 15
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=41.65 E-value=12 Score=33.58 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=22.7
Q ss_pred eeeeccccCcceeeccccCceeeccCCC
Q 001021 1113 RVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1113 ~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
.-+.|+.||.........+.|.|..|+.
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCC
Confidence 4578999998776656667899999987
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.75 E-value=27 Score=29.01 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=23.3
Q ss_pred CCCcceeeeccccCc-ceeeccccCceeeccCCC
Q 001021 1108 QSDAYRVHVCEHCGL-IAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1108 ~SD~~~~~vC~~cG~-~~~~~~~~~~~~C~~C~~ 1140 (1186)
.|+.-.+..|..||. -...+...+..+|..|+-
T Consensus 5 ~~~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 5 RLDALPRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred hhhccccccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 466667778999987 333444556789999974
No 17
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.31 E-value=29 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.503 Sum_probs=19.9
Q ss_pred eeeeccccCcceeec---------------cccCceeeccCCCC
Q 001021 1113 RVHVCEHCGLIAIAN---------------LKKNSFECRGCKNK 1141 (1186)
Q Consensus 1113 ~~~vC~~cG~~~~~~---------------~~~~~~~C~~C~~~ 1141 (1186)
..|+|..||-+.... .--..|.|+.|+..
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 468999999775311 11235799999875
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.18 E-value=25 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=20.0
Q ss_pred eeeccccCc-ceeeccccCceeeccCCC
Q 001021 1114 VHVCEHCGL-IAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1114 ~~vC~~cG~-~~~~~~~~~~~~C~~C~~ 1140 (1186)
..+|..||. -+..+...+..+|..|+-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 457999998 555555556789999975
No 19
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=29.95 E-value=26 Score=28.94 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=19.7
Q ss_pred eeeeccccCcceeecc---------------ccCceeeccCCCC
Q 001021 1113 RVHVCEHCGLIAIANL---------------KKNSFECRGCKNK 1141 (1186)
Q Consensus 1113 ~~~vC~~cG~~~~~~~---------------~~~~~~C~~C~~~ 1141 (1186)
..++|..||-+..... --..|.|+.|+..
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 3589999997753210 1235799999875
No 20
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.28 E-value=27 Score=27.76 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=19.6
Q ss_pred eeeeccccCcceee---c-----cccCceeeccCCCC
Q 001021 1113 RVHVCEHCGLIAIA---N-----LKKNSFECRGCKNK 1141 (1186)
Q Consensus 1113 ~~~vC~~cG~~~~~---~-----~~~~~~~C~~C~~~ 1141 (1186)
..++|..||-+... . ..-..|.|+.|+..
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 46899999977631 1 11235799999864
No 21
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=25.74 E-value=29 Score=33.01 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=22.3
Q ss_pred ceeeeccccCcceeeccccCceeeccCCC
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
+.-+.|+.||.....-...+.|.|+.|+.
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDY 86 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCC
Confidence 45688999998665444457899999986
No 22
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.63 E-value=33 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=19.1
Q ss_pred eeeccccCcceeec---------------cccCceeeccCCCC
Q 001021 1114 VHVCEHCGLIAIAN---------------LKKNSFECRGCKNK 1141 (1186)
Q Consensus 1114 ~~vC~~cG~~~~~~---------------~~~~~~~C~~C~~~ 1141 (1186)
.++|..||-+-... .--..|.|+.|+..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 58999999775221 12335799999874
No 23
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=25.48 E-value=30 Score=30.03 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=20.3
Q ss_pred ceeeeccccCcceeec---------------cccCceeeccCCCC
Q 001021 1112 YRVHVCEHCGLIAIAN---------------LKKNSFECRGCKNK 1141 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~---------------~~~~~~~C~~C~~~ 1141 (1186)
...++|..||-+.... .--..|.|+.|+..
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 3468999999775211 11235799999874
No 24
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=25.16 E-value=30 Score=30.21 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=22.8
Q ss_pred ceeeeccccCcceeeccccCceeeccCCC
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
+.-+.|+-||.....-...+.|.|..|+.
T Consensus 24 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp HSCBCCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred ccCccCCCCCCceeEecCCCeEECCCCCC
Confidence 34578999998876655567899999975
No 25
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.84 E-value=30 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.702 Sum_probs=22.8
Q ss_pred ceeeeccccCcceeeccccCceeeccCCC
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
+.-+.|+.||.....-...+.|.|..|+.
T Consensus 33 ~~ky~CpfCGk~~vkR~a~GIW~C~kCg~ 61 (83)
T 3j21_i 33 RQKHTCPVCGRKAVKRISTGIWQCQKCGA 61 (83)
T ss_dssp HSCBCCSSSCSSCEEEEETTEEEETTTCC
T ss_pred hcccCCCCCCCceeEecCcCeEEcCCCCC
Confidence 34578999999876555567899999975
No 26
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=24.08 E-value=32 Score=31.95 Aligned_cols=29 Identities=24% Similarity=0.616 Sum_probs=23.1
Q ss_pred ceeeeccccCcceeeccccCceeeccCCC
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
+.-+.|+-||.....-...+.|.|..|+.
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~kCg~ 62 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCKPCKK 62 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEETTTTE
T ss_pred hcCCCCCCCCCceeeecCcceEEcCCCCC
Confidence 45578999999886655567899999975
No 27
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.83 E-value=35 Score=30.84 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=20.2
Q ss_pred ceeeeccccCcceeec---------------cccCceeeccCCCC
Q 001021 1112 YRVHVCEHCGLIAIAN---------------LKKNSFECRGCKNK 1141 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~---------------~~~~~~~C~~C~~~ 1141 (1186)
...|+|..||-+.... .--..|.|+.|+..
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 3579999999775211 11235789999875
No 28
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.42 E-value=31 Score=28.03 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=19.3
Q ss_pred eeeeccccCcceeeccccCceeeccCCCC
Q 001021 1113 RVHVCEHCGLIAIANLKKNSFECRGCKNK 1141 (1186)
Q Consensus 1113 ~~~vC~~cG~~~~~~~~~~~~~C~~C~~~ 1141 (1186)
..+||..||.... .+.+.|+.|+..
T Consensus 13 ~k~iCpkC~a~~~----~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNP----WGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEEC----TTCSSCSSSSSC
T ss_pred CCccCCCCCCcCC----CCceecCCCCCc
Confidence 4689999998742 357889999865
No 29
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.23 E-value=41 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=18.9
Q ss_pred eeeccccCcceeecc---------------ccCceeeccCCCC
Q 001021 1114 VHVCEHCGLIAIANL---------------KKNSFECRGCKNK 1141 (1186)
Q Consensus 1114 ~~vC~~cG~~~~~~~---------------~~~~~~C~~C~~~ 1141 (1186)
.++|..||-+-.... .-..|.|+.|+..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 589999997752110 1235789999875
No 30
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=22.91 E-value=32 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=22.8
Q ss_pred ceeeeccccCcceeeccccCceeeccCCC
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
+.-+.|+-||.....-...+.|.|..|+.
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKRKAVGIWGCKDCGK 62 (92)
T ss_dssp HSCBCCTTTCSSCBEEEETTEEECSSSCC
T ss_pred hccccCcccCCCeeEecCcceEEcCCCCC
Confidence 44568999999876555567899999976
No 31
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.80 E-value=35 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=22.6
Q ss_pred ceeeeccccCcceeeccccCceeeccCCC
Q 001021 1112 YRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1112 ~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
+.-+.|+-||.....-...+.|.|..|+.
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~C~~ 62 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCSCCKK 62 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECTTTCC
T ss_pred hcCCcCCCCCCceeeecccceEEcCCCCC
Confidence 44578999998876555567899999975
No 32
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.63 E-value=33 Score=30.04 Aligned_cols=30 Identities=17% Similarity=0.455 Sum_probs=22.3
Q ss_pred cceeeeccccCcceeeccccCceeeccCCC
Q 001021 1111 AYRVHVCEHCGLIAIANLKKNSFECRGCKN 1140 (1186)
Q Consensus 1111 ~~~~~vC~~cG~~~~~~~~~~~~~C~~C~~ 1140 (1186)
-+.-+.|+-||.....-...+.|.|+.|+.
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~ 53 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCGHCGY 53 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECCCCCc
Confidence 345678999998765444456799999985
Done!