RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 001021
(1186 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 1190 bits (3080), Expect = 0.0
Identities = 731/1208 (60%), Positives = 910/1208 (75%), Gaps = 53/1208 (4%)
Query: 17 EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
EDE IT ED+WAVISA+F EKGLV QQLDSF++F+ T+Q+I+ E + + + +QH
Sbjct: 2 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 61
Query: 77 PGQQSD-------FAEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV-- 127
+ F +IY++KPM+ ESDG T L+P+ ARLRNLTYS+ L+VDV KR
Sbjct: 62 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 121
Query: 128 --------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 179
+K EE + + KVFIG++PIMLRS C L + +E DL +L ECP+D
Sbjct: 122 AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFD 181
Query: 180 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 239
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+RS E +R ST+ V++
Sbjct: 182 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 241
Query: 240 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 299
+ GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L
Sbjct: 242 YG----REGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 297
Query: 300 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 359
+P +E+ FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E++K
Sbjct: 298 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 357
Query: 360 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 419
A++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LF+KLT+D+ Y+Q+
Sbjct: 358 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR 417
Query: 420 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQA-NAAGTRAGVSQVLNRLTYASTLSH 478
V+ D N++ AI AKTITSGLKY+LATGNWG+ A +RAGVSQVLNR TY+STLSH
Sbjct: 418 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 477
Query: 479 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 538
LRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI
Sbjct: 478 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 537
Query: 539 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 598
+ FL EWG E E+ P P AT++FVNG W G+HR+P L++TLR LRR+ D+N EV
Sbjct: 538 ITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVS 597
Query: 599 VVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRESPEDGG--- 649
++RDIR KEL+I+TD GR RPLFIVE + L ++K I L E + G
Sbjct: 598 MIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFE 657
Query: 650 ------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE-------------AY 690
W L+ +G +EYID EEEE+ +I+M DL A + E +
Sbjct: 658 DVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHH 717
Query: 691 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 750
A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A
Sbjct: 718 ATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMAN 777
Query: 751 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 810
+LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSL
Sbjct: 778 ILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSL 837
Query: 811 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 870
FFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL PG RVSGEDVIIGK
Sbjct: 838 FFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGK 897
Query: 871 TTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 928
TTPIS D E + + +++RD S LR +E G+VDQVL+TTN DGL+FVKVRVR+ +IP
Sbjct: 898 TTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIP 957
Query: 929 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 988
QIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV
Sbjct: 958 QIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKV 1017
Query: 989 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1048
AA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQR
Sbjct: 1018 AALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQR 1077
Query: 1049 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1108
L+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL +
Sbjct: 1078 LRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEA 1137
Query: 1109 SDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1167
SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA KLLFQELMAM I P
Sbjct: 1138 SDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITP 1197
Query: 1168 RMLTKEDT 1175
R+ T
Sbjct: 1198 RLYTDRSR 1205
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 713 bits (1842), Expect = 0.0
Identities = 246/1240 (19%), Positives = 445/1240 (35%), Gaps = 237/1240 (19%)
Query: 32 ISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI-----EIRPESQHNPGQQS---DF 83
I L Q++S+ +Q + E+ I E P + + G+ DF
Sbjct: 9 IREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDF 68
Query: 84 AEIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 143
E L +P R ++LTY APLY + ++I K D + E
Sbjct: 69 LEYRLGEPPFP----------QDECREKDLTYQAPLYARL--QLIHK--DTGLIKED--- 111
Query: 144 TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 203
+VF+G +P+M G FIING+++V+++Q S
Sbjct: 112 -EVFLGHIPLMTED------------------------GSFIINGADRVIVSQIHRSPGV 146
Query: 204 VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 263
+ +P +Y +A + + R P G ++ +
Sbjct: 147 YFTPDPARPGRY--IASIIPL---PKRGPWIDLE-----VEPNG-------VVSMKVNKR 189
Query: 264 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR- 322
+ P++++ R LG+ + E Y EL++ ++E+ + AL +
Sbjct: 190 KFPLVLLLRVLGYDQETLARELGAYG-------ELVQGLMDESVFAMRPEEALIRLFTLL 242
Query: 323 GATVGVTRDKRIKYAKEILQKEMLPHVG---------------------TGDFCETKKAY 361
RDK + Y ++ +G + E K
Sbjct: 243 RPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEV 302
Query: 362 YFGYIIHRLLLCA-LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 420
+ + + L A + DD DH GN+R+ G L+ FR+ +L R VR +
Sbjct: 303 FLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMG 362
Query: 421 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 480
++ + + ++ + + ++ + SQ + S+L H R
Sbjct: 363 SED--SLTPAKLVNSRPLEAAIREFFSRSQL------------SQFKDETNPLSSLRHKR 408
Query: 481 RLNS----PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAA 535
R+++ + RE R +H + +G +CP ETPEG GL+ +LA + +G
Sbjct: 409 RISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIR 468
Query: 536 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 595
P + T+ ++ + T N G E +V RR V V+
Sbjct: 469 TPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVA--RRKGEPVIVSP 526
Query: 596 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 655
E D+ K ++++ L + R L+ S L+
Sbjct: 527 EEVEFMDVSPK--QVFSVNTNLIPFLEHDDANRALMG-----------SNMQTQAVPLIR 573
Query: 656 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 715
+ EE S+ + + ++ ++ +P
Sbjct: 574 AQAPVVMTGLEERVVRDSLA---------ALYAEEDGEVAKVDGNRIVVRYEDGRLVEYP 624
Query: 716 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 775
N T R + L A E+
Sbjct: 625 LRRFYRSNQG-------------TALDQRPRVVVGQRVRKGDLLADGPASENGFL---AL 668
Query: 776 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 835
G N +VAI + GYN ED++++++ + R F+ S+ Y E + +
Sbjct: 669 GQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERIT----- 723
Query: 836 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE---------AQGQASRY 886
+ + + LD++G+ G V D+++G+T+ + E +
Sbjct: 724 RDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKAR 783
Query: 887 TRRDHSISLRHSETGMVDQVL--------LTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 938
+D S+ + E G+V + + + V+V V R Q+GDK ++RH
Sbjct: 784 DVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRH 843
Query: 939 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 998
G KG V EDMP +G D+I+NP +PSRM +GQ++E +G +G+ +
Sbjct: 844 GNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYIS 903
Query: 999 TPFTDVTVDNISKALHKCGYQ--------------------------------------- 1019
F I + L +
Sbjct: 904 PIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQL 963
Query: 1020 ----MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1075
++G +Y+G TG + I +G + +L HMV+DK+H+R GP ++T+QP G
Sbjct: 964 KELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGG 1023
Query: 1076 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 1135
+++ GG RFGEME + A+GA+H L+E L +SD
Sbjct: 1024 KAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNA----------------AY 1067
Query: 1136 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 1175
D+ + +P + ++L +EL A+A+ + L ++D
Sbjct: 1068 EAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDN 1107
>d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase
{Bacillus circulans, different strains [TaxId: 1397]}
Length = 90
Score = 29.8 bits (67), Expect = 0.45
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 196 QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 229
QE+ N V +++++ + A VA R++ +
Sbjct: 4 QERWINNDVLIYERKFGSNVAVVAVNRNLNAPAS 37
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 29.2 bits (65), Expect = 0.64
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 1112 YRVHVCEHC-GLIAIANLKKNSFECRGCKNKTDIVQVHIPY-ACKLLFQELMAMAIAPRM 1169
Y CE C G + K + C+ + + + C+ ++ +A+ + P
Sbjct: 15 YNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECR--LKKCLAVGMRPEC 72
Query: 1170 LTKEDTKQSK 1179
+ E+ K
Sbjct: 73 VVPENQCAMK 82
>d1fc6a4 c.14.1.2 (A:78-156,A:249-463) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 294
Score = 29.7 bits (66), Expect = 1.9
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 921 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 973
R + Q S G TV T + G++PD+ ++P +P+
Sbjct: 224 RTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPT 276
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 26.5 bits (58), Expect = 4.2
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 1099 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN------KTDIVQVHIPYA 1152
L E + + + C C I ++ C C K + H +
Sbjct: 5 KKLTEGVLMRDPKFLW--CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRS 62
Query: 1153 CKLLFQELMAM 1163
C+ FQ M
Sbjct: 63 CE-DFQNWKRM 72
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH
{Salmonella typhimurium [TaxId: 90371]}
Length = 114
Score = 26.5 bits (58), Expect = 8.2
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 532 GSAAYPILEFLEEWGTENFEEI 553
G + L +W N ++
Sbjct: 88 GEQVSDKVAALADWIELNLPQV 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,472,492
Number of extensions: 220247
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 15
Length of query: 1186
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1091
Effective length of database: 1,103,246
Effective search space: 1203641386
Effective search space used: 1203641386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)